variantaccession chr start end varianttype variantsubtype reference pubmedid method platform mergedvariants supportingvariants mergedorsample frequency samplesize observedgains observedlosses cohortdescription genes samples nsv7879 1 1 117193 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14782,nssv14763,nssv14776,nssv14775,nssv14777,nssv14770,nssv14780,nssv18103,nssv14789,nssv14781,nssv14790,nssv14772,nssv14788,nssv21423,nssv14784,nssv14771,nssv14786,nssv18093,nssv18117,nssv14787,nssv14766,nssv14783,nssv18113,nssv14791,nssv14785,nssv14762,nssv14773,nssv14768,nssv14764,nssv14774 M 31 25 1 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10863,NA12155,NA12802,NA12872,NA18502,NA18504,NA18517,NA18537,NA18552,NA18563,NA18853,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19144,NA19173,NA19221,NA19240 dgv1e1 1 377 167280 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv15821,essv15097,essv10172,essv14783,essv9162,essv11114,essv3863 M 271 0 0 "" NA18860,NA18994,NA19129,NA19130,NA19159,NA19211,NA19223 dgv2e1 1 377 682895 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv171,essv4750,essv1421 M 271 0 0 "" NA18620,NA18944,NA18968 dgv3e1 1 377 1058627 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv6524,essv12864,essv7224,essv6104,essv606,esv595 M 271 0 0 "" NA18502,NA18547,NA18572,NA18573,NA18947 nsv469759 1 17843 167209 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649780 M 265 14 0 Samples from several populations that are part of the HapMap project. "" nsv471591 1 17844 167209 CNV Loss Sharp et al 2005 15918152 BAC_aCGH,FISH Eichler Segmental Duplication BAC array nssv550437,nssv550435,nssv550438,nssv550436 M 48 0 4 "" NA10492,NA10970,NA10971,NA17051 nsv437198 1 45257 76166 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467079 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19208 nsv437859 1 55871 68941 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv471423,nssv469962,nssv471090,nssv468851,nssv471312,nssv471201,nssv467740,nssv470979 M 269 0 8 Samples from several populations that are part of the HapMap project. "" NA10831,NA10857,NA12044,NA12155,NA18912,NA18914,NA19207,NA19208 nsv161172 1 78053 79016 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv179750 M 24 "" nsv8990 1 166125 167223 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14779 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18572 dgv4e1 1 357583 511231 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv19438,essv19171,essv6302,essv2061 M 271 0 0 "" NA11840,NA12865,NA18609,NA18949 dgv5e1 1 357583 682895 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv6152,essv21228,essv16896,essv14749,essv275,essv3049,essv1788,essv18422,essv479,essv7529,essv7127,essv6021,essv21797,essv6730,essv5344,essv563,essv22870,essv42,essv5822,essv15391,essv6816,essv13070,essv5209,essv4859,essv2576,essv6604,essv4965,essv20585,essv5049,essv8373,essv21138,essv14061,essv15368,essv18731,essv5240,essv4432,essv22385,essv16293,essv13159,essv18928,essv3078,essv398 M 271 0 0 "" NA07056,NA11830,NA12005,NA12239,NA12249,NA12760,NA12815,NA12874,NA12875,NA18532,NA18537,NA18540,NA18545,NA18562,NA18563,NA18566,NA18571,NA18573,NA18576,NA18579,NA18611,NA18621,NA18624,NA18637,NA18852,NA18858,NA18861,NA18862,NA18952,NA18969,NA18971,NA18978,NA18981,NA18990,NA18991,NA18997,NA18998,NA19102,NA19159,NA19161,NA19203,NA19205 nsv829647 1 357737 465038 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441629,nssv1441517,nssv1444850,nssv1447072,nssv1450405,nssv1442628,nssv1448183,nssv1443739,nssv1441518,nssv1445961,nssv1449294 M 95 1 10 "" nsv471518 1 358002 510787 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv547890,nssv547887,nssv547888 M 3 "" dgv1n14 1 361662 506464 CNV Gain Cooper et al 2008 18776910 SNP_array nsv433342,nsv433345,nsv433344 M 9 3 0 "" NA12156,NA18555,NA19240 nsv10050 1 387955 681462 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18107,nssv18114,nssv18121,nssv18095,nssv24597,nssv14769,nssv21446,nssv18100,nssv18111,nssv18098,nssv18096,nssv24606,nssv21441,nssv21443,nssv18109,nssv26896,nssv24594,nssv18118,nssv18105,nssv21439,nssv24614,nssv18116,nssv18112,nssv18120,nssv28054,nssv18101,nssv26902,nssv24604,nssv18099,nssv21433,nssv24618,nssv18119,nssv21426,nssv14765,nssv21424,nssv21450,nssv14767,nssv24612,nssv18106,nssv18110,nssv18104,nssv14778,nssv18094,nssv24595,nssv18092,nssv18115,nssv18102,nssv24620,nssv26886,nssv21447,nssv21435,nssv21449 M 31 8 30 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10847,NA10863,NA11830,NA12155,NA12740,NA12802,NA12872,NA18502,NA18504,NA18517,NA18537,NA18552,NA18563,NA18564,NA18572,NA18853,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19144,NA19173,NA19221,NA19240 dgv6e1 1 561232 682895 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv24485,essv18129,essv7831,essv680,essv1893,essv15885,essv8788,essv11817,essv24873,essv3867,essv4690,essv10773,essv1234,essv11842,essv3975,essv5438,essv1405,essv16081,essv852,essv20202,essv12580,essv9198,essv23137,essv18284,essv2348,essv16119,essv12160,essv8274,essv13656,essv11047,essv15246,essv12783,essv13620,essv18181,essv1953,essv9445,essv23929,essv23690,essv15724,essv24808,essv9009,essv15555,essv12294,essv11117,essv11947,essv24729,essv12450,essv15488,essv15621,essv8925,essv10404,essv1195,essv14290,essv6689,essv17510,essv11286,essv13768,essv22644,essv14424,essv21244,essv11537,essv20899,essv14172,essv4036,essv6244,essv16677,essv19212,essv24509,essv9346,essv13871,essv10692,essv12660,essv21964,essv19976,essv23021,essv20297,essv13036,essv3219,essv21709,essv9122,essv19771,essv14380,essv17097,essv18354,essv9811,essv5713,essv10930,essv10859,essv19599,essv8230,essv17122,essv22335,essv7384,essv9715,essv12764,essv23485,essv22778,essv14521,essv21382,essv15140,essv18622,essv22837,essv4875,essv8485,essv13540,essv5112,essv799,essv22228,essv7731,essv2208,essv5926,essv3733,essv16405,essv4148,essv22119,essv2295,essv2682,essv10308,essv4291 M 271 0 0 "" NA06985,NA07000,NA07019,NA07034,NA10835,NA10838,NA10846,NA10855,NA10857,NA10860,NA10863,NA11829,NA11832,NA11993,NA11994,NA11995,NA12004,NA12044,NA12056,NA12057,NA12144,NA12155,NA12234,NA12248,NA12740,NA12752,NA12762,NA12801,NA12802,NA12812,NA12813,NA12814,NA12891,NA18500,NA18501,NA18502,NA18505,NA18506,NA18507,NA18508,NA18516,NA18521,NA18523,NA18550,NA18555,NA18558,NA18561,NA18577,NA18593,NA18603,NA18608,NA18622,NA18623,NA18632,NA18633,NA18635,NA18636,NA18853,NA18854,NA18855,NA18859,NA18860,NA18863,NA18871,NA18912,NA18913,NA18914,NA18940,NA18951,NA18956,NA18959,NA18960,NA18961,NA18966,NA18967,NA18970,NA18974,NA18975,NA18976,NA18994,NA18995,NA19000,NA19007,NA19094,NA19098,NA19100,NA19101,NA19103,NA19116,NA19119,NA19120,NA19127,NA19128,NA19129,NA19131,NA19132,NA19137,NA19138,NA19139,NA19140,NA19142,NA19143,NA19153,NA19160,NA19171,NA19172,NA19173,NA19194,NA19200,NA19201,NA19202,NA19204,NA19207,NA19208,NA19209,NA19211,NA19221,NA19222,NA19223 nsv471522 1 562002 796646 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv547897,nssv547898,nssv547899 M 3 "" nsv830758 1 579118 696613 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442184,nssv1441962,nssv1441851,nssv1442073,nssv1442295,nssv1441740,nssv1442517,nssv1442406 M 95 0 8 "" dgv1e24 1 604297 689610 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH esv2750735,esv2750553,esv2750575,esv2750643,esv2750488,esv2750552,esv2750566,esv2750642,esv2750655,esv2750702,esv2750723,esv2750730,esv2750751 M 51 0 13 "" 21634,21837,21847,21863,21872,21911,21938,21972,22007,22170,22231,22278,22371 dgv2n14 1 604340 746231 CNV Gain Cooper et al 2008 18776910 SNP_array nsv433346,nsv433347 M 9 2 0 "" NA12156,NA19240 nsv831869 1 619355 783174 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443406,nssv1443073,nssv1443517,nssv1442740,nssv1442629,nssv1443628,nssv1443184,nssv1443295,nssv1442851,nssv1442962 M 95 8 2 "" dgv7e1 1 672781 852347 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv4575,essv5520,essv8112,essv19551,essv21546 M 271 0 0 "" NA12864,NA12873,NA18524,NA18529,NA19206 essv4734 1 672781 1038212 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18620 nsv10161 1 751974 1740811 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28552,nssv28048,nssv28533,nssv26892,nssv21431,nssv26879,nssv24610,nssv28031,nssv21429,nssv18108,nssv21448,nssv28940,nssv26876,nssv26882,nssv28921,nssv26877,nssv21436,nssv28558,nssv26888,nssv28038,nssv24621,nssv24602,nssv28029,nssv28542,nssv24600,nssv28946 M 31 11 7 Samples from several populations that are part of the HapMap project. "" NA07048,NA10839,NA10863,NA12740,NA12872,NA18504,NA18537,NA18552,NA18564,NA18572,NA18972,NA19144,NA19173,NA19221 nsv508722 1 757782 783936 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619756 S 4 1 0 "" NA10860 nsv510950 1 757782 787205 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621648,nssv624357 M 4 0 0 "" NA15510,NA18994 dgv1e55 1 792429 839326 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv34681,esv34886 M 771 2 0 "" NA18620,NA18947 essv2408 1 792429 1058627 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18976 nsv517709 1 792429 1251215 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv662132,nssv677805,nssv658652,nssv669544,nssv670683,nssv677935,nssv700902,nssv662754,nssv691743,nssv654371,nssv652918,nssv668090,nssv660727,nssv680332,nssv657472,nssv681209,nssv688100,nssv667239,nssv683576 M 2026 18 1 "" esv33946 1 794068 819619 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101171,essv96332 M 51 2 0 "" 21618,22371 nsv442837 1 805964 849636 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv298 1 812262 832522 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3151 S 9 1 0 "" NA12878 nsv832980 1 823522 982484 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443740 S 95 1 0 "" nsv508924 1 829622 860192 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619757 S 4 1 0 "" NA10860 nsv509035 1 866649 961171 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621079,nssv619758 M 4 2 0 "" NA10860,NA15510 nsv482036 1 936110 941162 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558397 S 1 1 0 "" KB1 nsv159315 1 940216 940291 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv177893 M 24 "" nsv159328 1 971732 971797 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv177906 M 24 "" nsv159419 1 972048 972178 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv177997 M 24 "" nsv509146 1 985957 1086491 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619759,nssv621080 M 4 2 0 "" NA10860,NA15510 nsv1409 1 1070774 1099988 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4677 S 9 1 0 "" NA19129 nsv160439 1 1084138 1084448 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv179017 M 24 "" esv32594 1 1091611 1091749 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv92767,essv96399 M 51 0 2 "" 21944,22371 nsv160193 1 1098837 1098916 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178771 M 24 "" nsv161017 1 1115830 1116012 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv179595 M 24 "" nsv469848 1 1121385 1297538 CNV Gain Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649869 M 265 12 0 Samples from several populations that are part of the HapMap project. "" nsv509257 1 1127258 1164773 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619760 S 4 1 0 "" NA10860 nsv455661 1 1192554 1251215 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533179 S 1557 0 1 "" 1782681247_A nsv159887 1 1193016 1197883 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178465 M 24 "" esv33767 1 1208039 1208999 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv95205,essv92753,essv96403 M 51 0 3 "" 21721,21944,22371 nsv817616 1 1232438 1282007 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417737 S 112 0 1 "" NA19003 dgv8e1 1 1239243 1359795 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv64,esv462 M 271 0 0 "" NA18991 nsv160950 1 1269035 1269035 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv179528 M 24 "" essv5472 1 1409796 1601817 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18632 dgv9e1 1 1409796 2056500 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv532,essv3870 M 271 0 0 "" NA18994 nsv482135 1 1470336 1490805 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558496 S 1 1 0 "" KB1 nsv482146 1 1492431 1516848 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558507 S 1 1 0 "" KB1 nsv482157 1 1532822 1555331 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558518 S 1 1 0 "" KB1 essv18821 1 1548033 1725888 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12248 dgv10e1 1 1651818 1762425 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv17575,essv1830,essv20259,essv10795,essv11783,essv16833,essv21660,essv11223,essv5454,essv16942,essv4042,essv13898,essv23336,essv20567,essv24958,essv17964,essv21384,essv7086,essv23590 M 271 0 0 "" NA07056,NA10839,NA12003,NA12006,NA12144,NA12248,NA12740,NA12750,NA12762,NA18504,NA18523,NA18537,NA18632,NA18635,NA18854,NA18976,NA19144,NA19204,NA19205 nsv442858 1 1660080 1704765 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv834091 1 1664960 1844239 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443851 S 95 0 1 "" nsv482168 1 1666332 1687953 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558529 S 1 1 0 "" KB1 essv725 1 1678951 1720354 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18940 nsv509368 1 1680493 1680493 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623768 S 4 1 0 "" NA18994 nsv159838 1 1681188 1681238 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178416 M 24 "" nsv160496 1 1681256 1681306 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv179074 M 24 "" nsv160062 1 1681878 1682839 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178640 M 24 "" nsv160158 1 1682765 1682765 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178736 M 24 "" nsv834335 1 1777072 1965567 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443962 S 95 0 1 "" nsv10272 1 1852616 1855474 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28034,nssv26884,nssv21432,nssv18097,nssv29276,nssv24607,nssv24619,nssv21440,nssv28028,nssv21425,nssv28044,nssv24617,nssv21422,nssv21437,nssv28535,nssv21434,nssv28930 M 31 17 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10847,NA10863,NA11830,NA12740,NA12872,NA18502,NA18504,NA18517,NA18552,NA18563,NA18572,NA18853,NA19007,NA19144,NA19173 nsv10383 1 1878777 1892043 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24603 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18502 nsv834446 1 1924205 2120036 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444073 S 95 0 1 "" nsv2520 1 2026895 2053222 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1058 S 9 1 0 "" NA19240 nsv509479 1 2035912 2140599 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619762,nssv619761 M 4 1 0 "" NA10860 nsv3631 1 2054906 2089114 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7778 S 9 1 0 "" NA12156 nsv160060 1 2070473 2070473 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178638 M 24 "" nsv460616 1 2073098 2121688 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537157 S 1557 0 1 "" NINDS_69 nsv834557 1 2081232 2274705 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445073,nssv1444851,nssv1444962,nssv1445295,nssv1444184,nssv1444628,nssv1444517,nssv1444406,nssv1444739,nssv1445184,nssv1444295 M 95 0 11 "" nsv461727 1 2114651 2214632 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538084 S 1557 0 1 "" 1780862101_A nsv818111 1 2172423 2188524 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417805 S 112 0 1 "" NA18853 nsv463949 1 2172423 2227279 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv539962 S 1557 0 1 "" 1780862414_A nsv834668 1 2187928 2356539 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447628,nssv1450517,nssv1448072,nssv1447073,nssv1445517,nssv1448961,nssv1450406,nssv1446406,nssv1445739,nssv1450628,nssv1450294,nssv1448406,nssv1448628,nssv1445406,nssv1447517,nssv1446184,nssv1448184,nssv1449072,nssv1449517,nssv1446850,nssv1448850,nssv1448739,nssv1450072,nssv1445962,nssv1446073,nssv1446961,nssv1445628,nssv1447184,nssv1447295,nssv1450183,nssv1447961,nssv1448295,nssv1449406,nssv1447739,nssv1449183,nssv1448517,nssv1446295,nssv1449628,nssv1449739,nssv1449850,nssv1447406,nssv1445850,nssv1447850,nssv1446739,nssv1446628,nssv1449961,nssv1449295,nssv1446517 M 95 0 48 "" nsv465060 1 2212686 2252811 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540916 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01351 nsv528621 1 2231219 2244011 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705251 S 2026 0 1 "" nsv4742 1 2268326 2314364 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3953,nssv10842,nssv8452,nssv5660,nssv1955 M 9 5 0 "" NA12156,NA12878,NA18555,NA18956,NA19129 nsv520511 1 2339643 2341244 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697462 S 2026 0 1 "" dgv1n27 1 2365193 2482556 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv467282,nsv466171 M 1557 0 2 "" HGDP00607,HGDP00614 dgv11e1 1 2408416 2412411 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv8862,esv312 M 271 0 0 "" NA18508 nsv818222 1 2456284 2522390 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417806,nssv1417514 M 112 0 2 "" NA18853,NA18968 nsv7171 1 2476160 2570233 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2141,nssv4052,nssv5821,nssv9849,nssv1153,nssv10864,nssv10880,nssv9802,nssv6533,nssv9287,nssv10990,nssv1241,nssv5743,nssv2047,nssv4140,nssv6621 M 9 0 0 "" NA12156,NA12878,NA15510,NA18507,NA18517,NA18555,NA18956,NA19129,NA19240 nsv1 1 2488752 2521167 OTHER Inversion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv1 S 1 0 0 "" NA15510 nsv829648 1 2519742 2604502 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450739 S 95 0 1 "" nsv161117 1 2615191 2615757 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv179695 M 24 "" dgv1n6 1 2615721 2623251 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv160392,nsv160178 M 24 "" nsv160953 1 2615862 2616462 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv179531 M 24 "" nsv160689 1 2616094 2616695 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv179267 M 24 "" nsv159794 1 2616808 2618494 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178372 M 24 "" nsv159997 1 2617037 2617197 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178575 M 24 "" nsv160053 1 2617469 2617469 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178631 M 24 "" nsv5853 1 2621432 2646595 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5901,nssv9998 M 9 2 0 "" NA18956,NA19129 nsv160294 1 2636643 2641218 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178872 M 24 "" nsv159383 1 2642730 2648431 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv177961 M 24 "" nsv159584 1 2648617 2648977 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178162 M 24 "" nsv6964 1 2648927 2650346 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6711 S 9 1 0 "" NA12156 nsv160877 1 2650139 2655801 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv179455 M 24 "" nsv7534 1 2650682 2653461 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4235 S 9 1 0 "" NA12878 nsv160247 1 2652469 2654837 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178825 M 24 "" nsv160029 1 2654977 2660999 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178607 M 24 "" nsv160879 1 2655279 2658044 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv179457 M 24 "" nsv159137 1 2655425 2655545 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv177715 M 24 "" nsv160272 1 2656091 2665166 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178850 M 24 "" nsv160341 1 2658452 2659335 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178919 M 24 "" nsv160000 1 2664953 2665152 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178578 M 24 "" nsv159461 1 2665426 2666268 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178039 M 24 "" nsv469835 1 2763858 2945708 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649856 M 265 0 1 Samples from several populations that are part of the HapMap project. "" nsv455662 1 2792699 2852708 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533180 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00515 nsv521946 1 2810250 2812265 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694715 S 2026 0 1 "" nsv159525 1 2860993 2861060 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178103 M 24 "" nsv829759 1 2946306 3034294 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450961,nssv1450850 M 95 0 2 "" nsv160478 1 2982424 2982424 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv179056 M 24 "" nsv457884 1 3085518 3127787 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534983 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01234 nsv458995 1 3106869 3136837 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535843 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00814 nsv160334 1 3121172 3121172 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178912 M 24 "" nsv829870 1 3149962 3279245 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451072,nssv1451183,nssv1451405,nssv1451294 M 95 0 4 "" nsv527875 1 3167902 3231987 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704374 S 2026 0 1 "" nsv829981 1 3175749 3356973 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441607,nssv1441530,nssv1441641,nssv1441519,nssv1441618,nssv1441563,nssv1441652,nssv1441663,nssv1441574,nssv1441541,nssv1441630,nssv1441585,nssv1441674,nssv1441685,nssv1441596,nssv1441552 M 95 0 16 "" nsv7645 1 3237264 3272344 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4419 S 9 1 0 "" NA12878 nsv161030 1 3237722 3237722 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv179608 M 24 "" nsv830092 1 3241103 3406530 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441785,nssv1441696,nssv1441818,nssv1441718,nssv1441729,nssv1441707,nssv1441741,nssv1441796,nssv1441829,nssv1441752,nssv1441840,nssv1441763,nssv1441807,nssv1441774 M 95 1 13 "" nsv522146 1 3250345 3252072 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694919 S 2026 0 1 "" nsv526836 1 3282270 3282340 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703193 S 2026 0 1 "" dgv12e1 1 3312095 3572010 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv386,essv3804 M 271 0 0 "" NA18943 nsv459950 1 3312886 3324287 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536592 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00788 nsv522900 1 3316822 3318129 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698558 S 2026 0 1 "" nsv524467 1 3331191 3331655 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700403 S 2026 0 1 "" dgv1n21 1 3331191 3337753 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv521921,nsv527139 M 2026 2 0 "" nsv830203 1 3386095 3547473 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441852,nssv1441863 M 95 0 2 "" nsv160351 1 3390176 3390176 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178929 M 24 "" nsv299 1 3416649 3452426 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9111,nssv4678,nssv4519 M 9 3 0 "" NA12156,NA12878,NA19129 nsv818333 1 3464421 3480028 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417807 S 112 0 1 "" NA18853 nsv10494 1 3469291 3475113 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21444,nssv21442 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18942,NA18975 nsv519082 1 3478914 3479749 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696553 S 2026 1 0 "" nsv818444 1 3510283 3533790 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417551 S 112 0 1 "" NA18971 nsv160325 1 3527604 3527604 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178903 M 24 "" nsv160986 1 3531346 3531411 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv179564 M 24 "" nsv160621 1 3531368 3531433 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv179199 M 24 "" nsv410 1 3574808 3606801 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10069 S 9 1 0 "" NA18956 nsv830314 1 3600497 3743996 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441974,nssv1441951,nssv1441963,nssv1441985,nssv1441907,nssv1441940,nssv1441874,nssv1441929,nssv1441896,nssv1441885,nssv1441918,nssv1441996 M 95 1 11 "" dgv13e1 1 3608198 3678693 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1254,essv20812 M 271 0 0 "" NA10855 nsv460061 1 3620174 3694948 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536686 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00787 nsv830425 1 3680610 3781546 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442007 S 95 1 0 "" nsv509590 1 3766178 3842213 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623769 S 4 1 0 "" NA18994 nsv159844 1 3783062 3784419 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178422 M 24 "" nsv460172 1 3924464 3991153 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536774 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00586 nsv521 1 3954237 3958406 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1327 S 9 1 0 "" NA19240 nsv159163 1 3970209 3970326 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv177741 M 24 "" nsv460283 1 4027927 4210100 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536884 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00817 nsv520675 1 4030684 4033472 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697551 S 2026 0 1 "" nsv509701 1 4053263 4130273 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619763 S 4 1 0 "" NA10860 nsv527177 1 4127235 4137467 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703573 S 2026 0 1 "" nsv830536 1 4150383 4295554 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442018 S 95 1 0 "" nsv830647 1 4187680 4357953 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442029 S 95 1 0 "" nsv159648 1 4273417 4273417 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178226 M 24 "" nsv830759 1 4357954 4579734 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442051,nssv1442040 M 95 0 2 "" nsv460394 1 4484362 4502489 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536980 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01098 nsv460505 1 4647904 4664430 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537066 S 1557 0 1 "" 1780862093_A nsv520031 1 4658110 4661403 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701964,nssv660165,nssv683157 M 2026 0 3 "" nsv521535 1 4658110 4683090 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694458 S 2026 0 1 "" nsv460617 1 4661403 4697492 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537158 S 1557 0 1 "" NINDS_66 nsv830870 1 4705759 4891672 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442062 S 95 0 1 "" nsv830981 1 4732638 4908624 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442074 S 95 1 0 "" nsv521327 1 4782944 4784878 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697933 S 2026 0 1 "" nsv632 1 4819786 4823945 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2960 S 9 1 0 "" NA18555 nsv521101 1 4941752 4964723 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv687649,nssv682279 M 2026 0 2 "" nsv525603 1 4978583 4979328 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701747 S 2026 0 1 "" nsv523740 1 5024284 5081085 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699556 S 2026 1 0 "" nsv460839 1 5024284 5084177 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537339 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00529 esv32797 1 5037643 5079218 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101012 S 51 0 1 "" 21693 nsv520723 1 5061618 5074797 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697576 S 2026 1 0 "" nsv521242 1 5194315 5197481 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697864 S 2026 0 1 "" dgv14e1 1 5200140 5470944 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2534,esv329 M 271 0 0 "" NA19003 nsv460950 1 5241130 5258643 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537425 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00998 nsv10605 1 5303963 5305386 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28532,nssv29260,nssv21430,nssv24593 M 31 4 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA12802,NA18504 nsv160607 1 5408434 5408507 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv179185 M 24 "" nsv10716 1 5409296 5411076 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26903 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19221 nsv831092 1 5427634 5578010 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442085 S 95 1 0 "" nsv527712 1 5557949 5559832 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704192 S 2026 0 1 "" dgv2n21 1 5558795 5559832 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv519513,nsv526005 M 2026 0 4 "" nsv523099 1 5693038 5699619 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698792 S 2026 1 0 "" nsv521706 1 5724764 5724921 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698329 S 2026 1 0 "" nsv508723 1 5771541 5966274 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623770,nssv619765,nssv619764 M 4 2 0 "" NA10860,NA18994 nsv831203 1 5824356 5962228 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442118,nssv1442096,nssv1442107 M 95 0 3 "" nsv518390 1 5840603 5847887 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695820 S 2026 1 0 "" nsv831314 1 5883735 6057323 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442151,nssv1442162,nssv1442129,nssv1442140 M 95 0 4 "" nsv743 1 5896395 5941653 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9178 S 9 0 1 "" NA12156 nsv506919 1 5969872 5975872 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623262 S 4 1 0 "" NA18994 esv33437 1 5971835 5972303 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101160,essv101040,essv94798,essv94307,essv97813,essv95744,essv93021,essv94480,essv92840,essv97100,essv93510,essv92517,essv99200,essv100607 M 51 14 0 "" 21618,21693,21791,21808,21837,21841,21863,21932,21939,22075,22128,22233,22275,22298 nsv520207 1 5977200 5980530 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697281 S 2026 0 1 "" nsv159264 1 5999559 5999756 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv177842 M 24 "" nsv461283 1 6042643 6118358 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537694 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00491 nsv831425 1 6123617 6258744 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442196,nssv1442185,nssv1442173 M 95 0 3 "" nsv818555 1 6124481 6147136 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417552 S 112 0 1 "" NA18971 nsv854 1 6125531 6170409 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7151 S 9 0 1 "" NA12156 nsv508825 1 6215601 6280875 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623771 S 4 1 0 "" NA18994 nsv526371 1 6241521 6301485 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702667 S 2026 0 1 "" nsv965 1 6247446 6292148 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7223 S 9 0 1 "" NA12156 nsv519253 1 6257202 6264281 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696748 S 2026 0 1 "" nsv522013 1 6301485 6390738 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694782 S 2026 0 1 "" nsv521525 1 6313873 6322050 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698142 S 2026 0 1 "" nsv1076 1 6319616 6363848 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2226 S 9 0 1 "" NA18555 nsv523989 1 6345480 6390738 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699845 S 2026 0 1 "" dgv2n27 1 6390738 6506441 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv461839,nsv461950,nsv461616,nsv461728 M 1557 0 4 "" 1780862021_A,HGDP00814,NINDS_66,NINDS_98 nsv508836 1 6401222 6495355 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619766 S 4 1 0 "" NA10860 nsv7880 1 6412294 6606240 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21438,nssv11789,nssv24605 M 31 1 2 Samples from several populations that are part of the HapMap project. "" NA18517,NA18564,NA19173 nsv482179 1 6419114 6455269 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558540 S 1 1 0 "" KB1 nsv831536 1 6423652 6599669 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442307,nssv1442340,nssv1442273,nssv1442362,nssv1442240,nssv1442318,nssv1442218,nssv1442351,nssv1442251,nssv1442373,nssv1442207,nssv1442229,nssv1442284,nssv1442262,nssv1442296,nssv1442329 M 95 0 16 "" nsv462061 1 6457696 6515162 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538332 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00614 nsv1187 1 6482110 6501731 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3152 S 9 1 0 "" NA12878 nsv831647 1 6520135 6581856 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442451,nssv1442518,nssv1442418,nssv1442429,nssv1442462,nssv1442529,nssv1442473,nssv1442395,nssv1442484,nssv1442540,nssv1442495,nssv1442384,nssv1442407,nssv1442506,nssv1442440 M 95 0 15 "" nsv437199 1 6636417 6738013 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467080 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19205 nsv1298 1 6672474 6692718 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4861 S 9 1 0 "" NA19129 nsv525013 1 6690700 6695527 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701050 S 2026 0 1 "" nsv519205 1 7024482 7033926 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696693 S 2026 0 1 "" nsv462394 1 7120591 7165750 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538567 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00797 nsv1410 1 7349892 7374254 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1411 S 9 1 0 "" NA19240 nsv527338 1 7417312 7420583 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703764 S 2026 0 1 "" nsv831758 1 7425623 7605939 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442584,nssv1442562,nssv1442551,nssv1442573 M 95 1 3 "" nsv522589 1 7441908 7453530 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705976 S 2026 0 1 "" nsv518903 1 7447291 7452964 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696361 S 2026 0 1 "" nsv526782 1 7481478 7483754 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703134 S 2026 0 1 "" nsv527595 1 7491418 7501678 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704056 S 2026 0 1 "" nsv7991 1 7502751 7506019 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26894 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18860 dgv15e1 1 7505729 7622325 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1390,essv12439 M 271 0 0 "" NA19152 nsv520077 1 7572245 7579068 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697212 S 2026 0 1 "" nsv161033 1 7790663 7799206 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv179611 M 24 "" nsv160721 1 7859203 7859650 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv179299 M 24 "" nsv1521 1 7948505 7981759 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2406 S 9 1 0 "" NA18555 nsv528132 1 8079560 8081423 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704677 S 2026 0 1 "" nsv442907 1 8116850 8123551 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv831870 1 8137673 8288423 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442652,nssv1442617,nssv1442630,nssv1442641,nssv1442606,nssv1442595 M 95 0 6 "" nsv441679 1 8140396 8143587 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv1632 1 8172675 8217840 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7290 S 9 0 1 "" NA12156 nsv1743 1 8312019 8345982 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3033 S 9 1 0 "" NA18555 nsv516827 1 8325154 8357776 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv684816,nssv685632,nssv693483,nssv671511,nssv656941,nssv679037,nssv657128,nssv654276,nssv693424 M 2026 0 9 "" nsv524946 1 8389978 8406430 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700963 S 2026 0 1 "" nsv159615 1 8511882 8515501 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178193 M 24 "" nsv1854 1 8760421 8793956 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7349 S 9 1 0 "" NA12156 dgv16e1 1 8822507 8850906 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv482,essv9828 M 271 0 0 "" NA18863 nsv527110 1 8925407 8926139 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703492 S 2026 0 1 "" nsv1965 1 8938004 8941923 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3239 S 9 1 0 "" NA12878 nsv516097 1 8943672 8945988 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv671111,nssv692368,nssv669183,nssv660728,nssv671439,nssv666175,nssv660321,nssv671923,nssv660579 M 2026 0 9 "" nsv526389 1 8973288 8984138 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702688 S 2026 0 1 "" nsv462616 1 8992812 9015232 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538732 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00806 nsv525092 1 8992812 9015232 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701151 S 2026 1 0 "" nsv462727 1 9014677 9067322 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538823 S 1557 0 1 "" 1780854205_A nsv831981 1 9025983 9181833 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442663 S 95 0 1 "" esv2422210 1 9100842 9208898 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161558 S 181 1 0 "" ND01701 nsv832092 1 9120834 9298868 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442674 S 95 0 1 "" dgv2e55 1 9250113 9338959 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv2750846,esv2750843,esv2750844 M 771 3 0 "" BEC_287,BEC_670,SPC_192 dgv3n27 1 9252667 9346674 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv463172,nsv462950,nsv463950,nsv462839,nsv463061 M 1557 5 0 "" 1780854392_A,1780854556_A,1780862066_A,1780862577_A,HGDP00136 nsv520191 1 9255507 9330926 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv661584,nssv696393,nssv688630,nssv662674,nssv687341 M 2026 5 0 "" esv2750845 1 9261679 9323484 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6980777,essv6985406 M 771 1 0 "" BEC_149 nsv464172 1 9312130 9347912 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540129 S 1557 0 1 "" 1780854065_A nsv517755 1 9449112 9473959 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv674995,nssv653129,nssv661666,nssv658552,nssv693425,nssv670279,nssv692200 M 2026 0 7 "" nsv2076 1 9531484 9565699 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3078 S 9 1 0 "" NA18555 nsv2187 1 9601562 9628016 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3334,nssv9906,nssv10282,nssv4948,nssv3119,nssv6883,nssv1500 M 9 7 0 "" NA12156,NA12878,NA18507,NA18555,NA18956,NA19129,NA19240 nsv508847 1 9606461 9673155 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619767,nssv623772,nssv621081 M 4 3 0 "" NA10860,NA15510,NA18994 nsv832203 1 9660898 9794475 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442685 S 95 0 1 "" nsv160151 1 9696862 9700374 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178729 M 24 "" nsv2298 1 9760552 9791753 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10302 S 9 0 1 "" NA18956 nsv527217 1 10027723 10191433 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703617 S 2026 1 0 "" nsv522629 1 10060031 10173463 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv706027 S 2026 1 0 "" nsv525216 1 10130206 10134840 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701302 S 2026 1 0 "" dgv17e1 1 10172336 10516820 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv10115,esv397,essv15694 M 271 0 0 "" NA18912,NA19130 nsv2409 1 10300356 10322502 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3425 S 9 1 0 "" NA12878 dgv1n17 1 10300753 10321970 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437201,nsv437200 M 60 0 2 "" NA18500,NA18914 nsv8102 1 10303236 10313112 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26900,nssv26885,nssv24611 M 31 0 3 Samples from several populations that are part of the HapMap project. "" NA18502,NA18853,NA19132 nsv515546 1 10304578 10307769 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv660763,nssv690059,nssv690144,nssv671141,nssv656381,nssv680299,nssv676915,nssv686246,nssv691095,nssv663872,nssv654559,nssv695737,nssv657555,nssv682975,nssv658813,nssv679262,nssv658241,nssv656820,nssv666539,nssv687648,nssv680418,nssv667908,nssv667133 M 2026 0 23 "" nsv818666 1 10304578 10307769 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417808,nssv1416820,nssv1417809,nssv1418422 M 112 0 4 "" NA18853,NA18854,NA19192,NA19238 nsv441678 1 10304807 10312249 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv437970 1 10309445 10312682 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv467963,nssv471534,nssv467852,nssv468074,nssv468185,nssv467741 M 269 0 6 Samples from several populations that are part of the HapMap project. "" NA18500,NA18502,NA18912,NA18914,NA19130,NA19132 essv3548 1 10383709 10516820 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18965 nsv8213 1 10385180 10394705 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28055 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19221 nsv8324 1 10415863 10418911 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26893,nssv28046,nssv24601,nssv24615,nssv24609,nssv24596,nssv12119,nssv24608,nssv26889,nssv28538,nssv11773,nssv21445,nssv28037,nssv28052,nssv21428,nssv26875,nssv28548,nssv29270,nssv26887,nssv29251 M 31 0 20 Samples from several populations that are part of the HapMap project. "" NA07029,NA10839,NA10847,NA12155,NA12740,NA12802,NA18502,NA18504,NA18517,NA18552,NA18563,NA18564,NA18572,NA18853,NA18860,NA18972,NA18975,NA18980,NA19132,NA19173 nsv160262 1 10416747 10418045 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178840 M 24 "" nsv2521 1 10487796 10532437 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7460 S 9 0 1 "" NA12156 nsv8435 1 10502450 10506640 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24613 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18942 nsv517464 1 10572870 10577463 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv679135,nssv652091,nssv685750,nssv693755,nssv683372,nssv681545 M 2026 0 6 "" nsv818777 1 10572870 10577463 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417173 S 112 0 1 "" NA18550 dgv4n27 1 10607460 10731132 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv464505,nsv465061 M 1557 0 2 "" 1780862093_A,1780862573_A nsv464949 1 10625214 10691465 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540805 S 1557 0 1 "" 1780862345_A nsv525693 1 10628391 10775171 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701852 S 2026 0 1 "" nsv436924 1 10638954 10666535 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv466805 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA10847 nsv832314 1 10639077 10794185 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442696,nssv1442718,nssv1442707 M 95 0 3 "" nsv438081 1 10640357 10651863 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv468407,nssv468296 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA10847,NA12146 nsv508858 1 10644890 10747476 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619768 S 4 1 0 "" NA10860 nsv818888 1 10653911 10684698 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417515 S 112 0 1 "" NA18968 dgv18e1 1 10676768 10855421 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv7352,essv21666,essv22143,essv18597,essv11014,essv5362,essv2783,essv13846,essv18290,essv3996 M 271 0 0 "" NA10846,NA10857,NA12234,NA12248,NA18563,NA18570,NA18854,NA18970,NA18987,NA19143 dgv19e1 1 10676768 10989413 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv7839,esv239 M 271 0 0 "" NA18558 nsv8546 1 10687193 10691033 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28027,nssv28926 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA12740 nsv465172 1 10691465 10731132 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541028 S 1557 0 1 "" 1780862416_A nsv465283 1 10702168 10749687 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541114 S 1557 0 1 "" NINDS_198 essv11784 1 10738084 10855421 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18504 nsv159406 1 10779492 10779492 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv177984 M 24 "" nsv832425 1 10838111 11057241 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442741,nssv1442729 M 95 0 2 "" nsv516264 1 10918217 10918828 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv667169,nssv688415,nssv655703,nssv662101,nssv683701,nssv680546,nssv693249,nssv676652 M 2026 0 8 "" nsv508869 1 10950523 11002782 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621082 S 4 1 0 "" NA15510 nsv516050 1 11306904 11332631 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700989,nssv665889,nssv683456,nssv701963 M 2026 0 4 "" nsv832536 1 11323043 11496607 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442752 S 95 0 1 "" nsv465394 1 11428098 11454919 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541193 S 1557 0 1 "" 1780854097_A nsv528438 1 11431260 11435697 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705033 S 2026 0 1 "" nsv2632 1 11471343 11502118 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv298 S 9 1 0 "" NA19240 nsv832647 1 11496613 11603862 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442763 S 95 0 1 "" nsv465505 1 11496756 11535385 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541299 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00857 nsv465727 1 11496756 11561124 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541477 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00787 nsv521736 1 11512097 11529597 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694500 S 2026 0 1 "" nsv520251 1 11548534 11561124 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697308 S 2026 0 1 "" nsv832758 1 11631349 11771410 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442774 S 95 0 1 "" nsv515826 1 11644827 11647829 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv666865,nssv664907,nssv693798,nssv682473,nssv685412,nssv681520,nssv679392,nssv673329,nssv660113,nssv683681,nssv674188,nssv682277,nssv655395 M 2026 0 13 "" nsv521468 1 11647829 11651566 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694449 S 2026 0 1 "" nsv508880 1 11715706 11765586 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619769 S 4 1 0 "" NA10860 nsv518652 1 11791977 11797044 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696101 S 2026 0 1 "" nsv527521 1 11835091 11843780 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703975 S 2026 0 1 "" nsv517385 1 11863096 11863161 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv669294,nssv681416,nssv656721,nssv673526,nssv653897,nssv652751,nssv690321 M 2026 0 7 "" nsv469830 1 12033992 12194181 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649851 M 265 0 0 Samples from several populations that are part of the HapMap project. "" nsv466060 1 12064317 12075727 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541698 S 1557 0 1 "" 1780862021_A nsv525898 1 12075727 12102789 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702102 S 2026 0 1 "" nsv508891 1 12092243 12229368 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619770 S 4 1 0 "" NA10860 nsv471622 1 12149530 12365909 CNV Gain+Loss Sharp et al 2005 15918152 BAC_aCGH,FISH Eichler Segmental Duplication BAC array nssv550319,nssv550325,nssv550330,nssv550326,nssv550318,nssv550343,nssv550324,nssv550321,nssv550322,nssv550327,nssv550323,nssv550336,nssv550338,nssv550328,nssv550332,nssv550341,nssv550337,nssv550342,nssv550339,nssv550333,nssv550335,nssv550334,nssv550340,nssv550329,nssv550331,nssv550320 M 48 1 25 "" NA10492,NA10494,NA10967,NA10969,NA10970,NA10971,NA10976,NA10979,NA11776,NA15724,NA15725,NA15726,NA15727,NA15728,NA15730,NA15732,NA15733,NA16688,NA17014,NA17015,NA17017,NA17020,NA17051,NA17052,NA17059,P86GA nsv527024 1 12158505 12201531 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703399 S 2026 0 1 "" nsv517848 1 12308014 12576509 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695253 S 2026 1 0 "" nsv2743 1 12326872 12371766 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7522 S 9 0 1 "" NA12156 nsv2854 1 12404958 12450375 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6975 S 9 0 1 "" NA12156 nsv528439 1 12436693 12441226 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705034 S 2026 0 1 "" nsv817617 1 12443209 12467734 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417810 S 112 0 1 "" NA18853 essv17144 1 12533434 12765362 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19171 dgv20e1 1 12533434 13622361 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv17525,essv1738,essv4439,essv21792,essv3141,essv19269,esv631,essv15250,essv4720,essv24139 M 271 0 0 "" NA10838,NA10847,NA12239,NA12762,NA18552,NA18622,NA18969,NA18997,NA19094 nsv521737 1 12533688 12619103 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694501 S 2026 0 1 "" nsv466172 1 12559367 12604662 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541787 S 1557 0 1 "" NINDS_71 nsv466283 1 12559367 12619103 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541870 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00259 dgv21e1 1 12608657 12954117 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2582,essv13601,essv22216 M 271 0 0 "" NA12044,NA18990,NA19127 nsv515525 1 12653477 12657450 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv691346,nssv687835,nssv663825,nssv655876 M 2026 0 4 "" nsv8657 1 12677413 12682226 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12449,nssv28045 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18853,NA19173 nsv466394 1 12709265 12848162 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541946 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00153 essv3598 1 12722672 12858228 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18969 dgv22e1 1 12722672 13622361 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv21921,essv21630,essv22720,essv12911,essv18416,essv22442,essv1381,essv8779,essv6526,essv6322,essv15030,essv2742,essv23457,essv24831,essv6145,essv22789,essv2050,essv10475,essv11698,essv12773,essv18517,essv21902,essv17868,essv4342,essv9820,essv18896,essv17159,essv22676,essv20489,essv16214,essv22849,essv22686,essv938,essv2428,essv18563,essv19111,essv2697,essv23267,essv4016 M 271 0 0 "" NA07000,NA07345,NA07348,NA10838,NA10851,NA10854,NA10857,NA12004,NA12044,NA12057,NA12239,NA12249,NA12717,NA12752,NA12753,NA12761,NA12763,NA12874,NA18515,NA18532,NA18609,NA18611,NA18622,NA18863,NA18949,NA18951,NA18965,NA18967,NA18970,NA19007,NA19092,NA19094,NA19120,NA19129,NA19154,NA19161,NA19171 nsv832869 1 12741739 12953456 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442796,nssv1442785 M 95 1 1 "" dgv23e1 1 12753329 12858228 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv3668,essv8035,essv19818 M 271 0 0 "" NA10847,NA18991,NA19103 nsv528703 1 12755136 12848162 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705350 S 2026 0 1 "" dgv24e1 1 12757377 12954117 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv17827,essv3731,essv5244,essv14768,essv11557,essv13702,essv14054,essv2857 M 271 0 0 "" NA10831,NA18624,NA18861,NA18953,NA18961,NA19119,NA19159,NA19173 dgv5n27 1 12768519 12848162 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv466505,nsv466727 M 1557 2 0 "" 1798860570_A,HGDP00007 dgv6n27 1 12770134 12848162 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv466949,nsv466616,nsv466838 M 1557 0 3 "" 1780862077_A,HGDP00952,HGDP01366 nsv517190 1 12770134 13521136 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv685626,nssv655601,nssv675460,nssv655298,nssv677999,nssv688922,nssv664467,nssv689950,nssv670301,nssv676168,nssv685508,nssv668984,nssv674582,nssv662916,nssv651901,nssv670769,nssv662340,nssv674765,nssv659765,nssv654351,nssv662505,nssv669367,nssv658961,nssv659462,nssv660425,nssv682789,nssv656069,nssv664297,nssv680385,nssv690595,nssv652682,nssv683316,nssv678527,nssv669316,nssv688196,nssv658218,nssv684041,nssv681069,nssv659030,nssv675328,nssv687198,nssv671841,nssv680570,nssv652055,nssv675204,nssv690145,nssv692088,nssv666273,nssv660265,nssv678613,nssv664702,nssv702090,nssv705370,nssv691789,nssv692526,nssv670277,nssv680870,nssv676529,nssv660049,nssv663203,nssv688182,nssv665485,nssv678933,nssv681241,nssv688036,nssv662290,nssv659477,nssv680419,nssv654248,nssv677586,nssv668625,nssv653971,nssv676136,nssv672363,nssv652446,nssv676530,nssv688711,nssv661007,nssv660725,nssv658040,nssv663875,nssv655162,nssv683850,nssv681352,nssv687685,nssv672026,nssv674814,nssv684928,nssv680445,nssv687277,nssv658370 M 2026 21 70 "" nsv471539 1 12774525 12799637 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv547949,nssv547950,nssv547951 M 3 "" nsv442270 1 12780129 12817362 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv8768 1 12780421 13262894 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28033,nssv28927,nssv12763,nssv26890,nssv13763,nssv13429,nssv12429,nssv11777,nssv11770,nssv12765,nssv28032,nssv28560,nssv11763,nssv28539,nssv14093,nssv14083,nssv26901,nssv11769,nssv28546,nssv29259,nssv29274,nssv28944,nssv29262,nssv28043,nssv12113,nssv12754,nssv28933,nssv29268,nssv12093,nssv28945,nssv14099,nssv11771,nssv11774,nssv28056,nssv28543,nssv28938,nssv13769,nssv13099,nssv15113,nssv12099,nssv28047,nssv29264,nssv12108,nssv11780,nssv28554,nssv26891,nssv14429,nssv29258,nssv28941,nssv28040,nssv13423,nssv28923,nssv12109,nssv11772,nssv12773,nssv28553,nssv28559,nssv29275,nssv12438,nssv12435,nssv12433,nssv13098,nssv28929,nssv21451,nssv28557,nssv12779,nssv28039,nssv29256,nssv26880,nssv12437,nssv12101,nssv26898,nssv12426,nssv26895,nssv28934,nssv13428,nssv12424,nssv26878,nssv26883,nssv29250,nssv28937,nssv28041,nssv13109,nssv11776,nssv28544,nssv29269,nssv28931,nssv11766,nssv28550,nssv13744,nssv28051,nssv12112,nssv28549,nssv11791,nssv13433,nssv28556,nssv28948,nssv28042,nssv29266,nssv21427,nssv11778,nssv28936,nssv12450,nssv12443,nssv28555,nssv24616,nssv12120,nssv28551,nssv12121,nssv29257,nssv26899,nssv28947,nssv12105,nssv28541,nssv28036,nssv28035,nssv11782,nssv28920,nssv12096,nssv29278,nssv28547,nssv13084,nssv14074,nssv11775,nssv12439,nssv11762,nssv24599,nssv29265,nssv29267,nssv28531,nssv12767,nssv28545,nssv12092,nssv28928,nssv28943,nssv29249,nssv13103,nssv28935,nssv24598,nssv13093,nssv28919,nssv28049,nssv13753,nssv12107,nssv12094,nssv28053,nssv29277,nssv28939,nssv14423,nssv11779,nssv13439,nssv11781,nssv12111,nssv12769,nssv29271,nssv11764,nssv11783,nssv12422,nssv24622,nssv13414,nssv29263,nssv11790,nssv12768,nssv29253,nssv14753,nssv12752,nssv26881,nssv26904,nssv26897,nssv28540,nssv12103,nssv28932,nssv12780,nssv12441,nssv28050,nssv29261 M 31 30 19 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10847,NA10863,NA11830,NA12155,NA12740,NA12802,NA12872,NA18502,NA18504,NA18517,NA18537,NA18552,NA18563,NA18564,NA18572,NA18853,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19144,NA19173,NA19221,NA19240 esv32750 1 12781210 12966551 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101537,essv97562,essv101177,essv96818,essv100986,essv95060,essv98305,essv94766,essv101326,essv94423,essv96954,essv97952,essv95661,essv95436,essv93105,essv95313,essv97426,essv95868,essv94614,essv99068,essv92841,essv92784,essv96187,essv96690,essv97209,essv95999,essv93282,essv99649,essv92594,essv96441,essv99314,essv97675,essv100225,essv100556,essv100377,essv98419,essv96257 M 51 37 0 "" 21603,21616,21618,21659,21693,21721,21772,21791,21805,21808,21817,21837,21841,21847,21863,21872,21879,21911,21932,21938,21939,21944,22007,22011,22075,22127,22170,22217,22233,22261,22275,22278,22286,22298,22300,22352,22371 dgv25e1 1 12790412 12858228 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv6560,essv2359,essv1080,essv973,essv9557,essv5619,essv1569 M 271 0 0 "" NA18593,NA18624,NA18861,NA18981,NA18990,NA18995,NA18997 nsv438192 1 12795015 12802503 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv468518,nssv468629 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA19101,NA19103 dgv7n27 1 12795015 12814622 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv467505,nsv467283,nsv467394,nsv467171 M 1557 0 4 "" HGDP00702,HGDP00999,HGDP01254,HGDP01269 dgv8n27 1 12795015 12848162 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv460339,nsv456440,nsv460039,nsv460006,nsv455885,nsv459662,nsv468505,nsv460317,nsv458996,nsv459440,nsv460195,nsv456551,nsv458773,nsv456218,nsv460150,nsv467616,nsv460328,nsv460173,nsv458329,nsv460250,nsv456107,nsv460084,nsv460028,nsv459329,nsv459107,nsv460073,nsv460206,nsv459218,nsv460217,nsv460128,nsv460261,nsv460117,nsv460228,nsv456329,nsv469171,nsv468616,nsv460095,nsv456996,nsv460139,nsv457662,nsv460295,nsv467727,nsv460306,nsv458440,nsv460184,nsv460017,nsv468838,nsv459551,nsv457440,nsv456885,nsv455774,nsv458551,nsv457996,nsv460284,nsv455996,nsv457773,nsv457218,nsv460050,nsv458107,nsv460239,nsv460161,nsv457885,nsv457551,nsv460062,nsv468727,nsv456774,nsv458884,nsv469393,nsv458662,nsv456662,nsv457329 M 1557 0 71 "" 1780854095_A,1780854216_A,1780854341_A,1780854357_A,1780854384_A,1780862015_A,1780862229_A,1780862250_A,1780862263_A,1780862346_A,1780862390_A,1780862574_A,1782681236_A,1782681287_A,1787431167_A,1798860277_A,HGDP00106,HGDP00169,HGDP00251,HGDP00267,HGDP00279,HGDP00285,HGDP00351,HGDP00364,HGDP00423,HGDP00694,HGDP00732,HGDP00748,HGDP00751,HGDP00780,HGDP00781,HGDP00791,HGDP00813,HGDP00856,HGDP00869,HGDP00896,HGDP00945,HGDP00950,HGDP00964,HGDP01003,HGDP01010,HGDP01191,HGDP01296,HGDP01306,HGDP01321,HGDP01330,HGDP01338,HGDP01352,HGDP01360,HGDP01361,HGDP01363,HGDP01368,HGDP01369,HGDP01372,HGDP01375,HGDP01400,NINDS_109,NINDS_117,NINDS_134,NINDS_182,NINDS_198,NINDS_219,NINDS_240,NINDS_253,NINDS_258,NINDS_266,NINDS_27,NINDS_50,NINDS_70,NINDS_83,NINDS_90 dgv9n27 1 12795015 12848162 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv459939,nsv467949,nsv459995,nsv468171,nsv455663,nsv469060,nsv459973,nsv459951,nsv458218,nsv457107,nsv460272,nsv459962,nsv459773,nsv468282,nsv459884,nsv468949,nsv459984,nsv468060,nsv460106,nsv468394,nsv469282,nsv467838 M 1557 22 0 "" 1780846321_A,1780854128_A,1780854260_A,1780854261_A,1780854362_A,1780862085_A,1780862294_A,1780862487_A,1782681216_A,1798860565_A,HGDP00021,HGDP00072,HGDP00262,HGDP00560,HGDP00572,HGDP00714,HGDP01033,HGDP01103,HGDP01251,HGDP01317,HGDP01399,NINDS_208 nsv817728 1 12795015 12848162 CNV Gain+Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417408,nssv1418336,nssv1418245,nssv1418338,nssv1418244,nssv1417095 M 112 4 2 "" NA10847,NA12239,NA18529,NA18951,NA19092,NA19094 dgv1n64 1 12800186 12848162 CNV Loss Wang_et_al_2007 17921354 SNP_array nsv817839,nsv818045,nsv817950 M 112 0 6 "" NA10857,NA12044,NA12865,NA12874,NA18593,NA18965 nsv2965 1 12804807 13009889 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5045,nssv10340,nssv3620,nssv9308 M 9 0 4 "" NA12878,NA18517,NA18956,NA19129 nsv7172 1 12813960 13122448 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9625,nssv5133,nssv5286,nssv6080,nssv3714,nssv10379,nssv7060,nssv7150,nssv9329,nssv10403,nssv11101,nssv11168,nssv5213,nssv382,nssv2496,nssv9624 M 9 0 0 "" NA12156,NA12878,NA15510,NA18507,NA18517,NA18555,NA18956,NA19129,NA19240 nsv460350 1 12814419 12848162 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536942 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00662 nsv433182 1 12814622 12895293 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463063 S 9 0 1 "" NA15510 nsv821616 1 12838572 13456521 CNV Gain Sebat_et_al_2004 15273396 ROMA Custom Nimblegen photoprint 85000 probe ROMA oligo array nssv1421290,nssv1421363,nssv1421352,nssv1421179,nssv1421374,nssv1421341 M 31 6 0 "" nsv442514 1 12843503 12861373 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" essv24011 1 12845362 12858228 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12873 dgv10n27 1 12845466 12848162 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv460406,nsv460439,nsv460461,nsv460428,nsv460472,nsv460361,nsv460372,nsv460383,nsv460450,nsv460417,nsv460395 M 1557 0 11 "" HGDP00467,HGDP00541,HGDP00702,HGDP00832,HGDP00837,HGDP00846,HGDP00849,HGDP00876,HGDP00984,HGDP00995,HGDP00999 nsv508902 1 12932305 12959929 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619771,nssv623773 M 4 2 0 "" NA10860,NA18994 nsv510936 1 12932305 13394436 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621649,nssv624358 M 4 0 0 "" NA15510,NA18994 nsv433183 1 12949150 13013807 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463064 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA19129 nsv441680 1 12983066 13122353 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv112 1 12983754 12986285 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv112 S 1 1 0 "" NA15510 esv33065 1 13002481 13098771 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93868,essv94661,essv97940,essv92785,essv99725 M 51 5 0 "" 21634,21791,21837,21944,22217 nsv832981 1 13075472 13262718 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442807 S 95 0 1 "" nsv442562 1 13190214 13213328 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv8879 1 13265344 13277705 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28030 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA10847 nsv8991 1 13292111 13495092 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13757,nssv28924,nssv14087,nssv12444,nssv29272,nssv14419,nssv14418,nssv11784,nssv13095,nssv12106,nssv14748,nssv13425,nssv14759,nssv12423,nssv12756,nssv12431,nssv12100,nssv16433,nssv28536,nssv11788,nssv15108,nssv13097,nssv13755,nssv12114,nssv12432,nssv12434,nssv12102,nssv12436,nssv12442,nssv13759,nssv12771,nssv28534,nssv12764,nssv13094,nssv15773,nssv12104,nssv13111,nssv13101,nssv13758,nssv11787,nssv12451,nssv12430,nssv12781,nssv14413,nssv14404,nssv15443,nssv14089,nssv12759,nssv14088,nssv28942,nssv13082,nssv13412,nssv12110,nssv14743,nssv15094,nssv13110,nssv13440,nssv13427,nssv28537,nssv16103,nssv14734,nssv12760,nssv15119,nssv12774,nssv29273,nssv11786,nssv28925 M 31 30 7 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10847,NA10863,NA11830,NA12155,NA12740,NA12802,NA12872,NA18502,NA18504,NA18517,NA18537,NA18552,NA18563,NA18564,NA18572,NA18853,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19144,NA19173,NA19221,NA19240 nsv508137 1 13296597 13517456 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618967 S 4 0 1 "" NA10860 nsv9102 1 13507788 13527501 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13441,nssv12762,nssv15449,nssv13770,nssv13431 M 31 1 4 Samples from several populations that are part of the HapMap project. "" NA18502,NA18860,NA19173,NA19221,NA19240 nsv833092 1 13550225 13709230 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442829,nssv1442818 M 95 0 2 "" nsv518971 1 13551345 13561427 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696439 S 2026 0 1 "" nsv460483 1 13649021 13662303 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537046 S 1557 0 1 "" 1780854159_A nsv3076 1 13699499 13729840 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv474 S 9 1 0 "" NA19240 nsv528139 1 13718556 13734533 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704685 S 2026 0 1 "" nsv523568 1 13737375 13749929 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699350 S 2026 0 1 "" nsv3187 1 13737645 13782952 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7852 S 9 0 1 "" NA12156 nsv508007 1 13930227 13936227 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618491,nssv621465 M 4 0 2 "" CHM,NA15510 nsv516549 1 13953794 13954642 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv690011,nssv669085 M 2026 0 2 "" nsv516435 1 14029766 14031770 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv681150,nssv683301,nssv668340 M 2026 0 3 "" esv35099 1 14039911 14115674 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6979949,essv6986978 M 771 1 0 "" NA18863 dgv26e1 1 14050388 14117706 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1095,essv9545,essv11300 M 271 0 0 "" NA18861,NA18863 nsv524444 1 14058786 14116481 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700376 S 2026 1 0 "" nsv517840 1 14077246 14083150 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695245 S 2026 0 1 "" nsv528033 1 14286618 14291315 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704564 S 2026 0 1 "" nsv460494 1 14422215 14449160 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537055 S 1557 0 1 "" 1780862466_A nsv520614 1 14423035 14424032 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697519 S 2026 0 1 "" nsv518697 1 14423035 14434013 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696148 S 2026 0 1 "" nsv833203 1 14424506 14466245 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442885,nssv1442840,nssv1442852,nssv1442929,nssv1442896,nssv1442940,nssv1442863,nssv1442918,nssv1442907,nssv1442874 M 95 5 5 "" nsv833314 1 14644461 14814182 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442951 S 95 0 1 "" nsv460506 1 14652520 14727226 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537067 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00554 nsv3298 1 14657613 14684792 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7914 S 9 1 0 "" NA12156 nsv441681 1 15021790 15024602 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv520075 1 15086361 15086719 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697211 S 2026 0 1 "" nsv527648 1 15086361 15088400 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704119 S 2026 0 1 "" nsv517844 1 15086361 15089709 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695248 S 2026 0 1 "" nsv521566 1 15088400 15092669 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698183 S 2026 1 0 "" nsv833425 1 15155132 15363530 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442963 S 95 1 0 "" nsv508913 1 15164192 15237263 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619772 S 4 1 0 "" NA10860 nsv437203 1 15232750 15235630 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467084 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19103 nsv441682 1 15234491 15235592 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv519926 1 15235123 15235190 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv690383,nssv689561,nssv687857,nssv659518 M 2026 0 4 "" nsv159446 1 15246185 15255968 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178024 M 24 "" nsv460550 1 15264098 15295831 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537098 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00863 esv2750811 1 15275566 15295831 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6981606,essv6981605,essv6985613 M 771 1 0 "" BEC_304 nsv517234 1 15330919 15338972 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv654089,nssv691051,nssv669267,nssv678288 M 2026 4 0 "" nsv833536 1 15395307 15600631 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442974,nssv1442985 M 95 0 2 "" nsv460561 1 15432365 15495523 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537108 S 1557 0 1 "" NINDS_60 nsv441683 1 15537730 15556527 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv818056 1 15542114 15554178 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415732,nssv1415731 M 112 0 2 "" NA12865,NA12875 nsv471769 1 15678279 15683728 CNV Loss Hinds et al 2006 16327809 Oligo_aCGH,PCR Custom Perlegen arrays nssv646050 M 0.128 95 "" nsv524044 1 15746894 15907142 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699908 S 2026 0 1 "" dgv11n27 1 15761292 15840622 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv460583,nsv460572 M 1557 2 0 "" HGDP00130,HGDP00160 nsv508925 1 15788897 15875374 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619773 S 4 1 0 "" NA10860 nsv460594 1 15821212 15871513 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537135 S 1557 0 1 "" NINDS_70 nsv527046 1 15832566 15856121 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703422 S 2026 0 1 "" nsv833647 1 15865843 16024135 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442996 S 95 0 1 "" dgv27e1 1 15872786 15900413 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv939,essv22007,essv19370 M 271 0 0 "" NA07019,NA12815 nsv3409 1 15881789 15924495 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8042 S 9 0 1 "" NA12156 nsv508936 1 15987653 16252826 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619774,nssv619775 M 4 1 0 "" NA10860 nsv833758 1 16040829 16212320 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443007,nssv1443018 M 95 1 1 "" nsv517651 1 16077215 16125888 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv674672,nssv674154,nssv673550,nssv698988,nssv673015,nssv683426,nssv666809,nssv680689,nssv655929,nssv654197,nssv688461,nssv683268,nssv692238,nssv674326,nssv701339,nssv687387,nssv692440,nssv653845,nssv672518,nssv667590,nssv653562,nssv661818,nssv678289,nssv680788,nssv664299,nssv669916,nssv670058,nssv700288,nssv663351,nssv664812,nssv685627,nssv659185,nssv669108,nssv673768,nssv701973,nssv687919,nssv656190,nssv675618,nssv668525,nssv669004,nssv656487 M 2026 5 36 "" nsv520148 1 16077215 16211309 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697249 S 2026 0 1 "" nsv524045 1 16077215 16298078 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699909 S 2026 0 1 "" dgv12n27 1 16085766 16113709 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv460618,nsv460605 M 1557 0 2 "" HGDP00525,HGDP00971 nsv460629 1 16085766 16125888 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537170 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01090 dgv13n27 1 16091763 16122137 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv460651,nsv460640 M 1557 2 0 "" HGDP00906,HGDP00941 dgv2n64 1 16093718 16113630 CNV Gain Wang_et_al_2007 17921354 SNP_array nsv818078,nsv818067 M 112 5 0 "" NA19143,NA19172,NA19173,NA19193,NA19194 esv32650 1 16109333 16135098 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93058,essv95958,essv97715 M 51 3 0 "" 21863,22127,22278 nsv441684 1 16113437 16124637 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv833869 1 16182059 16350435 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443029 S 95 0 1 "" nsv3520 1 16293114 16327552 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2762 S 9 1 0 "" NA18555 dgv28e1 1 16509639 16870964 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2595,essv16154,essv4125,essv16669,essv15101,essv18376,essv3387,essv6723,essv4977,essv404,essv9940 M 271 0 0 "" NA12249,NA18555,NA18608,NA18637,NA18945,NA18971,NA18990,NA19100,NA19129,NA19142,NA19145 dgv29e1 1 16509639 17229287 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv20767,essv1374,essv10302,essv2981,essv14148,essv16876,essv17478,essv11274,esv697,essv11570,essv10234,essv19098,essv20074,essv9815,essv8109,essv17163,essv7338,essv22395,essv11946,essv11626,essv2165 M 271 0 0 "" NA07048,NA07055,NA12146,NA12762,NA12875,NA18502,NA18506,NA18570,NA18863,NA18960,NA18981,NA19007,NA19140,NA19152,NA19154,NA19171,NA19173,NA19204,NA19205,NA19206 dgv1n68 1 16511077 16681998 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH nsv833980,nsv834092 M 95 0 8 "" nsv9213 1 16522323 16524839 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13424,nssv12118,nssv15103 M 31 0 3 Samples from several populations that are part of the HapMap project. "" NA18504,NA18517,NA19144 nsv9324 1 16542453 17026530 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14414,nssv14744,nssv13420,nssv13750,nssv16414,nssv16763,nssv12440,nssv13426,nssv14091,nssv14740,nssv17093,nssv15779,nssv13761,nssv12766,nssv13092,nssv28922,nssv13422,nssv12753,nssv13752,nssv13089,nssv14421,nssv12098,nssv16098,nssv13754,nssv15104,nssv11767,nssv13756,nssv14082,nssv13742,nssv13096,nssv14084,nssv13104,nssv29254,nssv13419,nssv12116,nssv14410,nssv15438,nssv11785,nssv14430,nssv15754,nssv14085,nssv17423,nssv29255,nssv12778,nssv12448,nssv13749,nssv13090,nssv14080,nssv12758,nssv14760,nssv14100,nssv15768,nssv11768,nssv15424,nssv12428,nssv14415,nssv16084,nssv12097 M 31 11 17 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10847,NA11830,NA12155,NA12740,NA12802,NA18502,NA18517,NA18537,NA18552,NA18564,NA18853,NA18860,NA18972,NA18975,NA18980,NA19007,NA19144,NA19173,NA19221 esv2750816 1 16554000 16775020 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6981188,essv6985510 M 771 1 0 "" BEC_362 dgv30e1 1 16554000 17088074 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv9970,essv949,essv10181,essv12895,essv10959,essv7936,essv15194,essv7990,essv21574,essv8050,essv8586,essv13308,essv11038,essv14673,essv14235,essv8266,essv13252,essv8718,essv12447,essv9267,essv8984,essv15917,essv6477,essv6464,essv7960,essv16559,essv4644,essv12117,essv19900,essv12088,essv14574,essv13338,essv18898,essv9441,essv10442,essv12873,essv8565,essv23321 M 271 0 0 "" NA12146,NA12264,NA12717,NA12813,NA18500,NA18502,NA18503,NA18504,NA18515,NA18516,NA18522,NA18594,NA18636,NA18637,NA18981,NA19092,NA19099,NA19100,NA19103,NA19130,NA19137,NA19139,NA19143,NA19145,NA19152,NA19153,NA19173,NA19193,NA19200,NA19201,NA19202,NA19203,NA19204,NA19205,NA19208,NA19209,NA19221 nsv159668 1 16555172 16556902 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178246 M 24 "" esv33046 1 16566864 16757830 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101566,essv101021,essv98327,essv94690,essv97938,essv95236,essv97341,essv101730,essv95920,essv96456,essv96254 M 51 0 11 "" 21603,21693,21772,21791,21837,21872,21879,21909,21911,22261,22371 essv25036 1 16573097 16690664 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12801 dgv31e1 1 16602533 16801212 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv16398,essv9511,essv8527,essv18478,essv24736,essv15397,essv15729,essv19470,essv12804,essv17392,essv22522,essv14216,essv9681,essv16000,essv19114 M 271 0 0 "" NA11829,NA11882,NA12044,NA12156,NA12750,NA18501,NA18521,NA18523,NA18855,NA18913,NA19120,NA19131,NA19139,NA19203 dgv32e1 1 16602533 16870964 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv23488,essv20254,essv1741,essv2334,essv6017,essv22908,essv23350,essv15858,essv5156,essv21549,essv5730,essv14729,essv447,essv17268,essv7145 M 271 0 0 "" NA07034,NA12144,NA12750,NA12760,NA12873,NA18503,NA18547,NA18564,NA18571,NA18593,NA18940,NA18952,NA18997,NA19159,NA19223 dgv33e1 1 16609393 16714401 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv9844,essv19066 M 271 0 0 "" NA11830,NA19144 nsv834203 1 16611450 16655427 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443251,nssv1443218,nssv1443129,nssv1443140,nssv1443151,nssv1443162,nssv1443196,nssv1443229,nssv1443185,nssv1443207,nssv1443173,nssv1443240 M 95 0 12 "" essv17368 1 16616622 16676312 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18517 nsv7173 1 16630880 17009620 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1910,nssv5314,nssv5331,nssv3885,nssv929,nssv9691,nssv747,nssv11237,nssv9949,nssv10485,nssv10890,nssv9682,nssv10507,nssv5304,nssv10523,nssv3861,nssv657,nssv10882,nssv9405,nssv1777,nssv3851,nssv9355,nssv1903,nssv6334,nssv1893,nssv1863 M 9 0 0 "" NA12156,NA12878,NA15510,NA18507,NA18517,NA18555,NA18956,NA19129,NA19240 nsv3632 1 16631152 16665730 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5295,nssv2682,nssv3801,nssv9681,nssv11241,nssv564,nssv6260 M 9 7 0 "" NA12156,NA12878,NA15510,NA18507,NA18555,NA19129,NA19240 nsv834247 1 16631869 16742477 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443296,nssv1443273,nssv1443373,nssv1443362,nssv1443340,nssv1443307,nssv1443262,nssv1443318,nssv1443329,nssv1443351,nssv1443284,nssv1443384 M 95 1 11 "" nsv221 1 16633602 16636994 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv221 S 1 1 0 "" NA15510 nsv471343 1 16635718 16663995 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548026,nssv548025,nssv548027 M 3 "" nsv471344 1 16635718 16685288 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548029,nssv548028,nssv548030 M 3 "" nsv482190 1 16635718 16685288 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558551 S 1 1 0 "" KB1 nsv159149 1 16637799 16639336 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv177727 M 24 "" esv34697 1 16640582 16790952 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6979544,essv6986884,essv6990378 M 771 1 0 "" NA18570 nsv3743 1 16644805 16690927 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3842,nssv835 M 9 0 2 "" NA12878,NA19240 nsv160674 1 16656061 16662364 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv179252 M 24 "" dgv34e1 1 16665577 17045289 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1312,essv2566,essv7452,essv2391,essv5863,essv1654,essv1297,essv4527,essv9483,essv1070,essv3658,essv635,essv3575,essv2922,essv1545,essv7886,essv14835,essv19315,essv11327,essv14917,essv22714,essv98,essv18806,essv4106,essv9528,essv8675,essv3489,essv4325,essv3943,essv20473,essv18690,essv1669,essv2946,essv12074,essv5077,essv507,essv3913,essv21893,essv10512,essv7246,essv7670,essv13813,essv8492,essv22267,essv23764,essv20753,essv21960,essv11309,essv5427,essv23713,essv14801,essv19814,essv24438,essv24019,essv5680,essv5953,essv24605,essv2,essv13968,essv14021,essv24180,essv613,essv22697,essv7649,essv21496,essv23097,essv8061,essv192,essv20981,essv2727,essv3252,essv13992,essv1573,essv1690,essv5646,essv2702,essv20819,essv1807,essv2144 M 271 0 0 "" NA06991,NA07000,NA07357,NA10855,NA10863,NA11992,NA11994,NA12003,NA12004,NA12043,NA12056,NA12239,NA12248,NA12249,NA12740,NA12751,NA12864,NA12865,NA12872,NA12873,NA12875,NA18529,NA18542,NA18555,NA18564,NA18570,NA18577,NA18579,NA18582,NA18605,NA18620,NA18623,NA18632,NA18635,NA18853,NA18854,NA18863,NA18870,NA18944,NA18945,NA18947,NA18952,NA18960,NA18961,NA18965,NA18967,NA18968,NA18970,NA18971,NA18972,NA18973,NA18974,NA18976,NA18978,NA18980,NA18987,NA18990,NA18991,NA18992,NA18994,NA18997,NA18998,NA18999,NA19005,NA19007,NA19012,NA19098,NA19101,NA19119,NA19128,NA19129,NA19140,NA19143,NA19154,NA19160,NA19161,NA19222,NA19223,NA19238 dgv35e1 1 16668122 16714401 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv19889,essv6793 M 271 0 0 "" NA11881,NA18594 dgv36e1 1 16668122 16801212 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv6935,essv25159,essv12038,essv21752,essv24554,essv15449,essv23162,essv15972,essv8991,essv11603,essv5622,essv19145,essv15156,essv22785,essv10595,essv6079 M 271 0 0 "" NA10831,NA10861,NA11831,NA11839,NA12753,NA12812,NA18593,NA18608,NA18621,NA19116,NA19142,NA19194,NA19206,NA19207,NA19210,NA19211 nsv469795 1 16668546 16755399 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649816 M 265 45 1 Samples from several populations that are part of the HapMap project. "" nsv471655 1 16668547 16755399 CNV Gain+Loss Sharp et al 2005 15918152 BAC_aCGH,FISH Eichler Segmental Duplication BAC array nssv550580,nssv550572,nssv550599,nssv550575,nssv550596,nssv550585,nssv550574,nssv550579,nssv550590,nssv550595,nssv550598,nssv550581,nssv550577,nssv550592,nssv550589,nssv550571,nssv550591,nssv550573,nssv550597,nssv550576,nssv550593,nssv550586,nssv550583,nssv550582,nssv550594,nssv550584,nssv550588,nssv550587,nssv550578 M 48 2 27 "" JK1051,JK1058,JK776,NA10469,NA10494,NA10495,NA10496,NA10967,NA10969,NA10976,NA10979,NA11521,NA11523,NA15724,NA15725,NA15726,NA15728,NA15730,NA15731,NA15732,NA15733,NA17014,NA17015,NA17016,NA17020,NA17051,NA17052,NA17059,P86GA essv11467 1 16668554 16676312 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18856 nsv3854 1 16690447 16709877 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3870 S 9 1 0 "" NA12878 dgv37e1 1 16704768 16801212 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv6418,essv2364,essv19296,essv19712,essv18520,essv20548,essv7638,essv14928,essv19372,essv995 M 271 0 0 "" NA07019,NA07022,NA11995,NA12236,NA12763,NA18545,NA18547,NA18964,NA18995,NA19132 dgv38e1 1 16704768 16961637 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv747,essv18043,essv722,essv13406,essv19835 M 271 0 0 "" NA06993,NA10847,NA18872,NA18940,NA19003 nsv160333 1 16746233 16746543 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178911 M 24 "" dgv39e1 1 16752898 16870964 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv3203,essv21290,essv6578,essv15527,essv15232,essv18131,essv12558,essv12264,essv3462,essv4752,essv21756,essv6329,essv24418,essv8651,essv24798,essv4243,essv14389,essv5796,essv5201,essv6909,essv20425,essv5576,essv3706,essv14604,essv24578,essv20210,essv529,essv16393,essv9749,essv17956,essv21315,essv11094,essv9084,essv1465,essv4715,essv7828,essv23121,essv1164,essv7560,essv1152,essv22983,essv2656 M 271 0 0 "" NA07357,NA10830,NA10855,NA10860,NA11832,NA11992,NA11993,NA12003,NA12239,NA12707,NA12878,NA12891,NA18505,NA18507,NA18529,NA18545,NA18558,NA18566,NA18603,NA18605,NA18609,NA18611,NA18620,NA18621,NA18622,NA18913,NA18944,NA18947,NA18951,NA18964,NA18967,NA18974,NA18992,NA18998,NA19093,NA19094,NA19098,NA19101,NA19132,NA19139,NA19211,NA19239 dgv40e1 1 16752898 17229287 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1499,essv9388 M 271 0 0 "" NA18853,NA18980 dgv2n6 1 16754863 16758067 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv159352,nsv159492 M 24 "" nsv438303 1 16756961 16769606 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv469074,nssv468852,nssv468963,nssv468740 M 269 0 4 Samples from several populations that are part of the HapMap project. "" NA12802,NA12815,NA19138,NA19139 esv33965 1 16757426 17025281 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101508,essv97457,essv101115,essv93832,essv101061,essv95128,essv98340,essv98164,essv94416,essv96937,essv97929,essv95690,essv95548,essv93056,essv95397,essv97342,essv97317,essv101652,essv101691,essv95885,essv95797,essv94631,essv94591,essv99013,essv92701,essv96578,essv97172,essv93586,essv93568,essv93286,essv94915,essv92596,essv96504,essv99198,essv97738,essv100280,essv100508,essv100427,essv96287 M 51 31 7 "" 21603,21616,21618,21634,21693,21721,21772,21808,21817,21837,21841,21847,21863,21872,21879,21909,21911,21932,21938,21944,22011,22075,22128,22170,22231,22233,22261,22275,22278,22286,22298,22300,22371 nsv437204 1 16760000 16769606 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467085 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18506 nsv437205 1 16764426 16781537 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467086 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19139 dgv41e1 1 16768709 17016443 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1047,essv5657,essv5761,essv18576,essv7481,essv6198,essv5003,essv4337,essv17409,essv3327,essv7051,essv25180,essv8890,essv1975,essv3684,essv6855,essv934,essv2412,essv3853,essv3440,essv2114 M 271 0 0 "" NA10851,NA11840,NA12760,NA18526,NA18540,NA18558,NA18561,NA18563,NA18571,NA18612,NA18622,NA18942,NA18943,NA18948,NA18949,NA18951,NA18953,NA18956,NA18959,NA18975,NA19171 nsv437206 1 16769606 16828567 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467087 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18863 essv15944 1 16770411 16801212 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18515 essv19867 1 16780906 16801212 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12234 nsv3965 1 16797817 16830348 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5340,nssv3893 M 9 2 0 "" NA12878,NA19129 nsv834258 1 16922665 17026255 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443395,nssv1443407,nssv1443418 M 95 0 3 "" nsv834269 1 16927084 17110332 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443551,nssv1443562,nssv1443606,nssv1443495,nssv1443429,nssv1443462,nssv1443518,nssv1443617,nssv1443440,nssv1443529,nssv1443629,nssv1443473,nssv1443573,nssv1443595,nssv1443640,nssv1443651,nssv1443506,nssv1443540,nssv1443484,nssv1443451,nssv1443662,nssv1443584 M 95 0 22 "" nsv442727 1 16940461 17007553 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv433184 1 16953757 17008683 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463065 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA12156 nsv834280 1 16960019 17194807 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443684,nssv1443673,nssv1443728,nssv1443741,nssv1443717,nssv1443695,nssv1443706,nssv1443752 M 95 0 8 "" essv24221 1 16962375 17016443 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12144 nsv437207 1 16962571 17002608 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467088 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19208 nsv508947 1 16981618 17082916 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619776,nssv623774 M 4 2 0 "" NA10860,NA18994 nsv482201 1 16993751 17044780 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558562 S 1 1 0 "" KB1 nsv437208 1 16994191 17013635 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467089 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19240 nsv438355 1 16999134 17010672 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv469518,nssv469407,nssv469296,nssv469185 M 269 0 4 Samples from several populations that are part of the HapMap project. "" NA19207,NA19208,NA19238,NA19240 nsv471438 1 17000001 17026544 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548289,nssv548311,nssv548300 M 3 "" esv2422314 1 17152699 17288428 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161240 S 181 1 0 "" ND01703 nsv460662 1 17157807 17230857 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537201 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00896 esv2422211 1 17198228 17229805 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161296 S 181 1 0 "" ND03833 nsv834291 1 17276123 17422018 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443763,nssv1443774 M 95 2 0 "" nsv508958 1 17316648 17368438 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623775,nssv619777,nssv621083 M 4 3 0 "" NA10860,NA15510,NA18994 nsv521814 1 17331959 17337630 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694586 S 2026 0 1 "" nsv516116 1 17337630 17359115 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv669330,nssv668375,nssv691565,nssv654821,nssv666311 M 2026 5 0 "" nsv4076 1 17355039 17366718 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv955 S 9 1 0 "" NA19240 esv33950 1 17420821 17422420 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101586,essv101249,essv95154,essv95433,essv93123,essv95861,essv92812,essv96134,essv96650,essv95937,essv94943,essv96455,essv100231,essv100601,essv96384 M 51 12 3 "" 21603,21618,21721,21847,21863,21911,21944,22007,22011,22127,22231,22261,22286,22298,22371 nsv4187 1 17575250 17609299 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2861 S 9 1 0 "" NA18555 nsv834302 1 17603237 17785253 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443785,nssv1443796 M 95 0 2 "" nsv818089 1 17633269 17648604 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417309 S 112 0 1 "" NA18608 nsv460673 1 17638122 17663906 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537212 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00553 nsv4298 1 17686972 17707975 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8255 S 9 0 1 "" NA12156 nsv518693 1 17744083 17745933 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696144 S 2026 0 1 "" nsv508248 1 17809711 17885611 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622757 S 4 0 1 "" NA18994 nsv518590 1 17818811 17820008 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696036 S 2026 0 1 "" nsv161140 1 17969437 17969437 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv179718 M 24 "" nsv834313 1 18027221 18234407 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443818,nssv1443829,nssv1443807 M 95 0 3 "" nsv508969 1 18057973 18123937 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623776,nssv619778 M 4 2 0 "" NA10860,NA18994 nsv521926 1 18094090 18157687 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694696 S 2026 0 1 "" nsv526833 1 18120246 18123096 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703190 S 2026 0 1 "" nsv834324 1 18246213 18426640 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443840 S 95 1 0 "" nsv4409 1 18252303 18285672 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8323 S 9 1 0 "" NA12156 nsv460684 1 18289090 18303051 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537223 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00554 nsv4520 1 18307225 18342383 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3912 S 9 1 0 "" NA12878 nsv528445 1 18324344 18346130 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705040 S 2026 0 1 "" nsv834336 1 18372159 18558506 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443852 S 95 0 1 "" nsv4631 1 18374807 18407566 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6396 S 9 1 0 "" NA12156 nsv4743 1 18447901 18493116 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8453 S 9 0 1 "" NA12156 nsv160887 1 18537846 18537846 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv179465 M 24 "" nsv159998 1 18537915 18537915 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178576 M 24 "" nsv518311 1 18558332 18558751 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695742 S 2026 0 1 "" nsv4854 1 18618237 18663887 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6404 S 9 0 1 "" NA12156 nsv460706 1 18638898 18654171 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537241 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01278 nsv4965 1 18677118 18710692 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5358 S 9 1 0 "" NA19129 nsv5076 1 18730908 18775580 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8574 S 9 0 1 "" NA12156 nsv506920 1 18740784 18746784 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619225 S 4 1 0 "" NA10860 nsv5187 1 18827384 18872290 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8645 S 9 0 1 "" NA12156 nsv834347 1 18988077 19214228 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443863 S 95 1 0 "" nsv5298 1 19110681 19147914 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2867,nssv5363,nssv3923 M 9 3 0 "" NA12878,NA18555,NA19129 nsv508980 1 19114148 19169557 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621084 S 4 1 0 "" NA15510 nsv834358 1 19473171 19651333 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443874 S 95 0 1 "" nsv5409 1 19476604 19481180 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1934 S 9 1 0 "" NA18555 nsv471771 1 19506696 19506917 CNV Loss Hinds et al 2006 16327809 Oligo_aCGH,PCR Custom Perlegen arrays nssv646052 M 1.068 95 "" nsv508991 1 19639374 19777710 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621085 S 4 1 0 "" NA15510 nsv159533 1 19700184 19700249 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178111 M 24 "" nsv460717 1 19982037 19996105 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537249 S 1557 0 1 "" NINDS_168 nsv527818 1 20051193 20125451 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704313 S 2026 1 0 "" nsv5520 1 20142852 20187777 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5380 S 9 0 1 "" NA19129 nsv519515 1 20153487 20154680 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv674889,nssv693891,nssv656533,nssv689562 M 2026 0 4 "" nsv818100 1 20346318 20350265 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417739 S 112 0 1 "" NA19003 nsv5631 1 20410138 20452932 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5386,nssv3933 M 9 2 0 "" NA12878,NA19129 nsv460729 1 20639271 20664218 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537251 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00552 esv2750602 1 20659598 20660423 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv95034 S 51 0 1 "" 22231 nsv528156 1 20661007 20680102 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704704 S 2026 0 1 "" nsv834369 1 20681569 20851636 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443896,nssv1443885 M 95 0 2 "" nsv522796 1 20740258 20748032 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698440 S 2026 0 1 "" nsv520013 1 20756488 20800032 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697177 S 2026 0 1 "" nsv5742 1 20830193 20865317 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3942 S 9 1 0 "" NA12878 nsv834380 1 21144576 21319747 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443907 S 95 1 0 "" nsv160811 1 21173375 21176679 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv179389 M 24 "" nsv515620 1 21402468 21402545 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv656270,nssv664134 M 2026 0 2 "" dgv42e1 1 21481490 21687720 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv11654,esv191,essv11511 M 271 0 0 "" NA19154,NA19173 nsv9435 1 21483049 21545501 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15120,nssv16109,nssv14412 M 31 2 1 Samples from several populations that are part of the HapMap project. "" NA18502,NA19173,NA19221 nsv160214 1 21533052 21533115 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178792 M 24 "" nsv527108 1 21568598 21571872 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703488 S 2026 0 1 "" nsv834391 1 21595239 21795788 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443918,nssv1443951,nssv1443940,nssv1443929,nssv1443963 M 95 0 5 "" nsv517096 1 21608997 21742154 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv678465,nssv657650,nssv676837,nssv667702,nssv699191,nssv678892,nssv705217,nssv671036,nssv682311,nssv682220,nssv652854,nssv674071,nssv651804,nssv679211,nssv658962,nssv695226,nssv674624,nssv683155,nssv653597,nssv661510,nssv667278 M 2026 0 21 "" nsv460740 1 21634812 21644797 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537258 S 1557 0 1 "" NINDS_181 nsv508359 1 21650180 21725997 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622758 S 4 0 1 "" NA18994 nsv509002 1 21650180 21725997 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619779 S 4 1 0 "" NA10860 nsv460751 1 21703842 21733928 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537263 S 1557 0 1 "" 1780854065_A nsv5854 1 21748455 21783415 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3954 S 9 1 0 "" NA12878 nsv5965 1 21786264 21816788 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6413 S 9 1 0 "" NA12156 nsv508470 1 21787971 21876415 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622759 S 4 0 1 "" NA18994 nsv515659 1 21871635 22010599 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv687314,nssv705427,nssv705759,nssv704109,nssv663807,nssv695098,nssv669540,nssv664272,nssv669785 M 2026 0 9 "" nsv9546 1 21873884 21883277 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17753 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18972 nsv509013 1 21876415 22046907 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621086 S 4 1 0 "" NA15510 esv33753 1 21877250 21882650 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93649 S 51 0 1 "" 21972 nsv834402 1 21880538 22068428 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443985,nssv1443996,nssv1443974 M 95 0 3 "" esv33407 1 21884404 21884524 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv95073,essv94051,essv94306,essv97064,essv97380,essv95849,essv97131,essv99600,essv94942,essv99343,essv100572 M 51 11 0 "" 21721,21802,21808,21817,21879,21911,22075,22217,22231,22275,22298 nsv460762 1 21887289 21929858 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537273 S 1557 0 1 "" NINDS_70 nsv469549 1 21887371 22091809 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649660 M 265 0 3 Samples from several populations that are part of the HapMap project. "" nsv460784 1 21929858 21961585 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537294 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00857 dgv43e1 1 21967827 22158163 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv18229,esv180 M 271 0 0 "" NA12057 nsv834413 1 21980519 22165480 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444007,nssv1444018,nssv1444040,nssv1444029 M 95 0 4 "" nsv460795 1 21994895 22029801 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537305 S 1557 0 1 "" NINDS_74 nsv9657 1 22054832 22088637 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12446,nssv18083 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18972,NA19007 nsv441686 1 22065817 22082549 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv528664 1 22073585 22134633 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705302 S 2026 1 0 "" nsv6076 1 22161605 22195710 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2871 S 9 1 0 "" NA18555 nsv460806 1 22197151 22258153 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537310 S 1557 0 1 "" 1780862415_A nsv517086 1 22244836 22258153 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv653762,nssv664021,nssv663458,nssv676101,nssv682668,nssv677352,nssv682790,nssv661058,nssv656347,nssv665257,nssv669739,nssv684635,nssv683851,nssv663876,nssv687280,nssv653181,nssv679575,nssv671842,nssv671692,nssv666144,nssv664643 M 2026 0 21 "" nsv522370 1 22301299 22336762 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695150 S 2026 0 1 "" nsv516575 1 22334299 22343363 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv674738,nssv669268 M 2026 0 2 "" nsv522775 1 22345379 22345473 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698416 S 2026 0 1 "" nsv159512 1 22345386 22353969 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178090 M 24 "" nsv528939 1 22345473 22352863 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705630 S 2026 0 1 "" nsv520015 1 22420527 22428336 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697178 S 2026 0 1 "" nsv159392 1 22424863 22425001 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv177970 M 24 "" nsv6187 1 22460870 22481227 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3965 S 9 0 1 "" NA12878 nsv6298 1 22577814 22622870 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8765 S 9 0 1 "" NA12156 nsv506921 1 22579855 22585855 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619226,nssv620646,nssv623263 M 4 3 0 "" NA10860,NA15510,NA18994 nsv509024 1 22608789 22653542 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619780 S 4 1 0 "" NA10860 nsv160591 1 22649794 22650891 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv179169 M 24 "" nsv469829 1 22827328 23008716 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649850 M 265 0 4 Samples from several populations that are part of the HapMap project. "" nsv509036 1 22851938 22931297 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619781 S 4 1 0 "" NA10860 nsv528926 1 22934429 22951990 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705616 S 2026 0 1 "" nsv6409 1 22970104 23001957 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1954 S 9 1 0 "" NA18555 nsv6520 1 23149675 23168352 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5396 S 9 1 0 "" NA19129 nsv834424 1 23204710 23348008 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444051 S 95 0 1 "" nsv6631 1 23339200 23358079 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3974,nssv9804,nssv6423,nssv10760,nssv5405,nssv964,nssv1966 M 9 7 0 "" NA12156,NA12878,NA18507,NA18555,NA18956,NA19129,NA19240 nsv509047 1 23343271 23361877 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621087,nssv617990,nssv619782,nssv623777 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv525446 1 23441458 23446618 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701574 S 2026 1 0 "" nsv521882 1 23455781 23459971 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694653 S 2026 0 1 "" nsv834435 1 23544768 23723237 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444062,nssv1444074 M 95 0 2 "" nsv160295 1 23636366 23640557 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178873 M 24 "" nsv460840 1 23682567 23733667 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537340 S 1557 0 1 "" 1780862162_A nsv160080 1 23748784 23752212 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178658 M 24 "" nsv6742 1 23999219 24032687 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2882 S 9 1 0 "" NA18555 nsv506922 1 24219874 24225874 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619227,nssv623264,nssv617526,nssv620647 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv506923 1 24236952 24242952 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619228,nssv620649,nssv623265,nssv617527 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv6853 1 24237419 24271527 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8821 S 9 1 0 "" NA12156 nsv469575 1 24325003 24521702 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649688 M 265 0 0 Samples from several populations that are part of the HapMap project. "" nsv834447 1 24394889 24550514 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444085 S 95 0 1 "" nsv6965 1 24540302 24560448 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1967 S 9 0 1 "" NA18555 nsv834458 1 24649625 24741441 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444096 S 95 0 1 "" nsv160922 1 24704050 24712316 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv179500 M 24 "" nsv460862 1 24732183 24785173 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537354 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00974 nsv522437 1 24825828 24932022 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705795 S 2026 1 0 "" nsv7076 1 24861624 24941934 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv973,nssv1983,nssv3984 M 9 0 3 "" NA12878,NA18555,NA19240 nsv160319 1 24904010 24906831 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178897 M 24 "" nsv508581 1 24956285 25040025 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622760 S 4 0 1 "" NA18994 nsv526082 1 25154913 25164748 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702326 S 2026 0 1 "" nsv471772 1 25156193 25156364 CNV Loss Hinds et al 2006 16327809 Oligo_aCGH,PCR Custom Perlegen arrays nssv646053 M 0.021 95 "" dgv44e1 1 25190816 25209157 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv5839,esv1221 M 271 0 0 "" NA18524 nsv523480 1 25204738 25205954 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699245 S 2026 0 1 "" nsv818112 1 25264929 25271187 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417310 S 112 0 1 "" NA18608 nsv7187 1 25268924 25301303 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6432 S 9 1 0 "" NA12156 nsv7298 1 25316374 25417454 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3995,nssv9806,nssv6442,nssv10899 M 9 0 4 "" NA12156,NA12878,NA15510,NA18507 nsv232 1 25318324 25417454 CNV Loss Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv232 S 1 0 1 "" NA15510 nsv834469 1 25327725 25507851 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444218,nssv1444107,nssv1444162,nssv1444173,nssv1444118,nssv1444229,nssv1444129,nssv1444240,nssv1444185,nssv1444140,nssv1444196,nssv1444151,nssv1444207 M 95 2 11 "" nsv9768 1 25328634 25512932 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13764,nssv14749,nssv13088,nssv14417,nssv13438,nssv13743,nssv13083,nssv15105,nssv15111,nssv14101,nssv15433,nssv15435,nssv15434,nssv14742,nssv15450,nssv15764,nssv13413,nssv12115,nssv16744,nssv13100,nssv13771,nssv13416,nssv15763,nssv12770,nssv13106,nssv14747,nssv29252,nssv12772,nssv12776,nssv13108,nssv14745,nssv13434,nssv17074,nssv15102,nssv13418,nssv16428,nssv14751,nssv16094,nssv13086,nssv18443,nssv17404 M 31 21 1 Samples from several populations that are part of the HapMap project. "" NA07048,NA10839,NA10847,NA10863,NA12155,NA18502,NA18504,NA18517,NA18537,NA18563,NA18564,NA18572,NA18853,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19144,NA19221,NA19240 esv32921 1 25330663 25410174 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv96835,essv101286,essv101732,essv93733,essv95026,essv100169 M 51 3 3 "" 21659,21805,21909,21972,22231,22286 nsv433185 1 25334936 25409982 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463066 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA12156 nsv7174 1 25337102 25463540 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9251,nssv9262 M 9 0 0 "" NA18517 nsv442830 1 25338444 25407321 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv7409 1 25340648 25373503 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4006 S 9 1 0 "" NA12878 nsv482212 1 25344297 25402252 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558573 S 1 1 0 "" KB1 nsv821617 1 25383121 25432220 CNV Loss Sebat_et_al_2004 15273396 ROMA Custom Nimblegen photoprint 85000 probe ROMA oligo array nssv1421385,nssv1421396 M 31 0 2 "" nsv834480 1 25383914 25514614 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444251 S 95 1 0 "" nsv482037 1 25434057 25492679 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558398 S 1 1 0 "" KB1 nsv7479 1 25457053 25489734 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6452 S 9 1 0 "" NA12156 nsv834491 1 25737048 25924750 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444273,nssv1444262 M 95 0 2 "" nsv460884 1 25789119 25902226 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537367 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01023 nsv7490 1 25808494 25854174 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6462 S 9 0 1 "" NA12156 nsv834502 1 25844918 25998061 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444284 S 95 1 0 "" nsv834513 1 25933613 26098018 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444296 S 95 1 0 "" nsv7501 1 25997615 26031056 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4016 S 9 1 0 "" NA12878 nsv508678 1 26061699 26116769 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622761 S 4 0 1 "" NA18994 nsv7512 1 26138566 26167475 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv983,nssv6471 M 9 0 2 "" NA12156,NA19240 nsv160685 1 26173955 26174280 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv179263 M 24 "" nsv526179 1 26545423 26589709 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702441 S 2026 1 0 "" nsv7175 1 26608616 26697584 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5431,nssv10774,nssv6489,nssv9811,nssv994,nssv6480,nssv1994,nssv4025,nssv5440 M 9 0 0 "" NA12156,NA12878,NA18507,NA18555,NA18956,NA19129,NA19240 nsv7523 1 26752331 26797173 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8873 S 9 0 1 "" NA12156 nsv834524 1 26840817 27005135 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444340,nssv1444318,nssv1444307,nssv1444373,nssv1444351,nssv1444362,nssv1444329 M 95 2 5 "" nsv7535 1 26867726 26888456 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9264 S 9 1 0 "" NA18517 nsv508689 1 26923095 26970139 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620126 S 4 0 1 "" NA15510 nsv834535 1 27017218 27190559 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444384,nssv1444395 M 95 1 1 "" nsv509058 1 27079481 27119998 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623778 S 4 1 0 "" NA18994 nsv526051 1 27294888 27456151 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702288 S 2026 1 0 "" nsv516766 1 27346377 27415793 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv654983,nssv670705 M 2026 0 2 "" dgv14n27 1 27456151 27629501 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv460895,nsv460906 M 1557 0 2 "" 1780854103_A,HGDP00861 nsv159932 1 27500045 27500127 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178510 M 24 "" nsv460917 1 27533442 27621598 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537395 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00890 nsv522842 1 27533442 27695996 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698494 S 2026 1 0 "" nsv520790 1 27543178 27560624 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697612 S 2026 0 1 "" nsv508700 1 27567296 27664338 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620127 S 4 0 1 "" NA15510 nsv160061 1 27663578 27663578 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178639 M 24 "" nsv509069 1 27828113 27916609 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621088 S 4 1 0 "" NA15510 nsv160741 1 27884704 27885638 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv179319 M 24 "" nsv7546 1 28176354 28194108 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8875 S 9 0 1 "" NA12156 nsv7557 1 28347775 28379652 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4043,nssv1003,nssv2893,nssv6496 M 9 4 0 "" NA12156,NA12878,NA18555,NA19240 nsv7568 1 28391945 28422774 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2004 S 9 1 0 "" NA18555 nsv506924 1 28755208 28761208 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619229 S 4 1 0 "" NA10860 nsv509080 1 28873667 28902543 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621089 S 4 1 0 "" NA15510 nsv160265 1 28898228 28900486 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178843 M 24 "" dgv3n21 1 28928511 28965804 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv525553,nsv517547 M 2026 0 3 "" nsv460928 1 28928511 28986754 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537404 S 1557 0 1 "" 1782681216_A nsv519203 1 28928511 28995989 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696691 S 2026 1 0 "" nsv525310 1 28959591 28965804 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701417 S 2026 0 1 "" nsv7579 1 29168077 29212721 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4053 S 9 0 1 "" NA12878 nsv509091 1 29250348 29311027 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619783 S 4 1 0 "" NA10860 nsv834546 1 29392898 29580917 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444407,nssv1444418 M 95 0 2 "" nsv7590 1 29656932 29688509 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5449 S 9 1 0 "" NA19129 dgv4n21 1 29802595 29803764 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv526370,nsv521489 M 2026 2 0 "" nsv7601 1 29827162 29854041 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2014 S 9 1 0 "" NA18555 nsv509102 1 29841999 29906820 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619784 S 4 1 0 "" NA10860 nsv460951 1 30037976 30072061 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537426 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00976 nsv7612 1 30049683 30094618 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8893 S 9 0 1 "" NA12156 nsv7623 1 30095536 30128045 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6516 S 9 1 0 "" NA12156 nsv515814 1 30155221 30157433 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv667788,nssv664863,nssv683554,nssv658372,nssv668377,nssv657229 M 2026 0 6 "" nsv7634 1 30201199 30222177 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8909 S 9 0 1 "" NA12156 nsv834558 1 30257576 30437505 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444429 S 95 1 0 "" dgv45e1 1 30375428 30410749 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv20474,essv24093,essv20991,esv1036,essv17690 M 271 0 0 "" NA07048,NA10835,NA10863,NA12249 essv23694 1 30406466 30408889 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12740 essv23632 1 30407525 30410589 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA07055 nsv9879 1 30407563 30409572 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14079,nssv13746 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA10863,NA12740 nsv7646 1 30441339 30475485 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1013 S 9 1 0 "" NA19240 nsv834569 1 30447156 30601449 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444440 S 95 1 0 "" nsv509113 1 30533084 30551362 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621090,nssv623779,nssv619785,nssv617991 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv7657 1 30540669 30552122 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4077,nssv1022 M 9 2 0 "" NA12878,NA19240 nsv7668 1 30557439 30602726 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8924 S 9 0 1 "" NA12156 nsv834580 1 30561730 30723852 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444451 S 95 0 1 "" nsv520401 1 30649879 30654744 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697394 S 2026 0 1 "" nsv7679 1 30777017 30810649 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10785,nssv1031 M 9 2 0 "" NA18956,NA19240 nsv460995 1 30782816 30941144 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537451 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01203 nsv509124 1 30852550 30901646 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619786 S 4 1 0 "" NA10860 nsv7690 1 30901443 30932449 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5460 S 9 1 0 "" NA19129 nsv160695 1 30913664 30913755 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv179273 M 24 "" nsv159749 1 30913755 30913848 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178327 M 24 "" nsv159205 1 30915100 30915100 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv177783 M 24 "" nsv519204 1 31006510 31071241 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696692 S 2026 1 0 "" nsv461006 1 31016413 31044662 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537462 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01077 nsv160596 1 31036474 31036538 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv179174 M 24 "" nsv160199 1 31036599 31036665 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178777 M 24 "" nsv7701 1 31107951 31138017 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10787 S 9 1 0 "" NA18956 nsv506925 1 31140516 31146516 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617528,nssv623266,nssv619230 M 4 3 0 "" CHM,NA10860,NA18994 nsv508711 1 31227347 31334488 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618969 S 4 0 1 "" NA10860 nsv160707 1 31345543 31347262 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv179285 M 24 "" dgv46e1 1 31351473 32135424 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv19201,esv639,essv24452 M 271 0 0 "" NA12865 nsv9990 1 31389069 31392550 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15765 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18537 nsv161067 1 31401067 31410235 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv179645 M 24 "" nsv10051 1 31403378 31406262 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16093 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18504 nsv520589 1 31524567 31527091 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697507 S 2026 0 1 "" nsv7712 1 31556501 31584791 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6532,nssv4085,nssv1039,nssv5468 M 9 4 0 "" NA12156,NA12878,NA19129,NA19240 nsv509135 1 31562511 31614164 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619787,nssv621091 M 4 2 0 "" NA10860,NA15510 nsv509147 1 31629716 31661768 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623780,nssv617992,nssv621092,nssv619788 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv7723 1 31631305 31662442 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2021,nssv5475,nssv1048,nssv6542,nssv10798,nssv4095 M 9 6 0 "" NA12156,NA12878,NA18555,NA18956,NA19129,NA19240 nsv7734 1 31669832 31699486 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6550 S 9 1 0 "" NA12156 nsv10062 1 31705994 31758075 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14086,nssv15780 M 31 1 1 Samples from several populations that are part of the HapMap project. "" NA18552,NA19221 nsv818123 1 31802830 31815857 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415933 S 112 0 1 "" NA12750 nsv528364 1 31815857 31826102 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704951 S 2026 0 1 "" nsv461028 1 31834588 31884271 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537481 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00433 nsv160616 1 31950470 31950470 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv179194 M 24 "" esv33582 1 32032043 32081219 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98660 S 51 0 1 "" 21606 nsv834591 1 32040547 32194558 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444462 S 95 0 1 "" nsv10073 1 32117378 32121515 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16758 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18564 nsv7745 1 32318564 32326763 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10803 S 9 1 0 "" NA18956 nsv300 1 32341606 32376383 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1059 S 9 1 0 "" NA19240 nsv521689 1 32535810 32544373 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698309 S 2026 0 1 "" nsv517673 1 32544049 32544373 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv656688,nssv658183,nssv652612,nssv665622,nssv660765,nssv683040,nssv658815,nssv654560,nssv654219,nssv693089,nssv671459,nssv664022 M 2026 0 12 "" nsv461039 1 32701505 32820044 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537491 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00017 nsv519188 1 32754337 32915533 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696672 S 2026 0 1 "" nsv160489 1 32788354 32793244 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv179067 M 24 "" nsv509158 1 32826407 32918514 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619789 S 4 1 0 "" NA10860 nsv311 1 32845552 32865438 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8951 S 9 1 0 "" NA12156 nsv322 1 32893053 32916689 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8957 S 9 0 1 "" NA12156 nsv516302 1 32989694 33049201 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699367,nssv670847,nssv667416,nssv696432,nssv687923,nssv672465,nssv668935,nssv661821,nssv668150 M 2026 0 9 "" nsv509169 1 33078331 33166599 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619790 S 4 1 0 "" NA10860 nsv834602 1 33082385 33250915 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444473 S 95 0 1 "" nsv520532 1 33359791 33365250 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697472 S 2026 0 1 "" nsv524709 1 33401285 33406519 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700693 S 2026 0 1 "" nsv522364 1 33401285 33502026 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695144 S 2026 0 1 "" nsv516693 1 33453720 33489227 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv689909,nssv670196,nssv657897,nssv687609 M 2026 0 4 "" nsv834613 1 33469299 33630881 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444484 S 95 1 0 "" nsv333 1 33526451 33571601 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8973 S 9 0 1 "" NA12156 nsv161059 1 33539893 33546153 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv179637 M 24 "" nsv344 1 33602908 33624101 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9819,nssv1070 M 9 2 0 "" NA18507,NA19240 nsv355 1 33670687 33704342 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5476 S 9 1 0 "" NA19129 nsv518591 1 33698163 33701510 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696037 S 2026 0 1 "" nsv366 1 33763660 33796048 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4102 S 9 1 0 "" NA12878 nsv524359 1 33879625 33882493 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700270 S 2026 1 0 "" nsv509180 1 33899417 33985116 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621093 S 4 1 0 "" NA15510 nsv834624 1 33974766 34140925 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444495 S 95 0 1 "" nsv834635 1 34088431 34281068 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444506 S 95 1 0 "" nsv834646 1 34183259 34357799 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444518 S 95 1 0 "" nsv461062 1 34213223 34215787 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537511 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01317 nsv834657 1 34237179 34413559 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444529 S 95 1 0 "" nsv158970 1 34237297 34237391 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv177548 M 24 "" nsv506926 1 34266773 34272773 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623267,nssv620650,nssv619231,nssv617529 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv834669 1 34318110 34495934 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444540 S 95 1 0 "" nsv377 1 34425063 34455316 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2038 S 9 1 0 "" NA18555 nsv521016 1 34434067 34452777 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697737 S 2026 0 1 "" nsv524723 1 34459388 34523721 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700709 S 2026 1 0 "" nsv528365 1 34490924 34504051 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704952 S 2026 0 1 "" nsv388 1 34532640 34577764 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8984 S 9 0 1 "" NA12156 nsv521683 1 34535749 34536461 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698303 S 2026 0 1 "" nsv10084 1 34743552 34750152 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13436 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19007 nsv243 1 34758633 34783684 CNV Loss Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv243 S 1 0 1 "" NA15510 nsv399 1 34758633 34790253 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6567,nssv4111,nssv10904 M 9 0 3 "" NA12156,NA12878,NA15510 esv32563 1 34764080 34779910 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101290,essv96198,essv94955 M 51 3 0 "" 21805,22007,22231 nsv10095 1 34766123 34781383 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12761,nssv14416,nssv14076 M 31 0 3 Samples from several populations that are part of the HapMap project. "" NA10863,NA12872,NA18552 dgv2n17 1 34766613 34782277 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437257,nsv437146,nsv437035,nsv437368 M 60 0 4 "" NA10830,NA10854,NA12753,NA12878 nsv442849 1 34771747 34773584 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv438366 1 34773415 34777369 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470407,nssv470074,nssv469740,nssv469629,nssv470296,nssv470185,nssv469963,nssv469851 M 269 0 8 Samples from several populations that are part of the HapMap project. "" NA10830,NA10854,NA11839,NA12154,NA12753,NA12763,NA12878,NA12892 nsv516954 1 34776362 34777369 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv690846,nssv676247,nssv686521,nssv664843,nssv658164,nssv653496,nssv657679,nssv653936,nssv676478,nssv660609,nssv663637,nssv689139,nssv662596,nssv692397,nssv688198,nssv684981,nssv680832,nssv662263,nssv667647,nssv692641,nssv674550,nssv657434,nssv657451,nssv657127,nssv684742,nssv678549 M 2026 0 26 "" nsv411 1 35077509 35110020 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2058 S 9 1 0 "" NA18555 nsv511093 1 35125479 35151367 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624359 S 4 0 0 "" NA18994 nsv508138 1 35131621 35151367 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620128 S 4 0 1 "" NA15510 nsv422 1 35248854 35252559 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2066 S 9 1 0 "" NA18555 nsv509191 1 35258232 35305789 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617993 S 4 1 0 "" CHM nsv508149 1 35321881 35420363 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618971 S 4 0 1 "" NA10860 nsv818134 1 35378870 35410756 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417263 S 112 0 1 "" NA18593 esv32554 1 35553398 35562647 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100050 S 51 0 1 "" 22086 esv33735 1 35568213 35569189 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99911 S 51 1 0 "" 22086 nsv433 1 35717151 35762106 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9000 S 9 0 1 "" NA12156 nsv834680 1 35795315 36026910 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444551 S 95 1 0 "" nsv525430 1 35911121 35995289 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701556 S 2026 0 1 "" nsv524683 1 35963725 35995289 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700654 S 2026 0 1 "" nsv526837 1 36036873 36049226 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703194 S 2026 0 1 "" nsv159158 1 36143788 36143788 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv177736 M 24 "" nsv518844 1 36166442 36201409 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694280 S 2026 0 1 "" nsv834691 1 36193831 36373234 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444573,nssv1444562 M 95 0 2 "" nsv10106 1 36269520 36286400 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13748 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA12155 dgv47e1 1 36289232 36556181 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv129,essv24512 M 271 0 0 "" NA12802 nsv834702 1 36325324 36526425 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444584 S 95 0 1 "" nsv159975 1 36339444 36343660 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178553 M 24 "" nsv160040 1 36418363 36418414 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178618 M 24 "" nsv444 1 36420268 36464673 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2067 S 9 0 1 "" NA18555 nsv524394 1 36458639 36516859 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700312 S 2026 0 1 "" nsv509202 1 36567980 36624862 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619791 S 4 1 0 "" NA10860 nsv461073 1 36593769 36629719 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537522 S 1557 0 1 "" 1780862529_A nsv520839 1 36596826 36645346 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697643 S 2026 0 1 "" nsv509213 1 36693586 36767335 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619792 S 4 1 0 "" NA10860 nsv455 1 36796801 36830101 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9005 S 9 1 0 "" NA12156 nsv834713 1 37013625 37178046 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444595 S 95 1 0 "" nsv522473 1 37072505 37085362 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705838 S 2026 0 1 "" nsv466 1 37121111 37165744 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9013 S 9 0 1 "" NA12156 nsv834724 1 37178105 37339280 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444606 S 95 1 0 "" nsv509224 1 37203300 37324321 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619793 S 4 1 0 "" NA10860 nsv521436 1 37304597 37353012 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698046 S 2026 0 1 "" nsv477 1 37325531 37370650 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9019 S 9 0 1 "" NA12156 nsv488 1 37362445 37396097 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1081 S 9 1 0 "" NA19240 nsv834735 1 37415751 37577879 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444629,nssv1444617 M 95 0 2 "" nsv499 1 37475216 37485566 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4120 S 9 1 0 "" NA12878 nsv160102 1 37485567 37485805 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178680 M 24 "" nsv519697 1 37534004 37535436 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696998 S 2026 0 1 "" nsv519551 1 37626469 37644372 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv684557,nssv656832 M 2026 2 0 "" nsv524834 1 37630706 37720678 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700835 S 2026 1 0 "" nsv834746 1 37672045 37836419 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444640 S 95 0 1 "" nsv160858 1 37746443 37746513 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv179436 M 24 "" nsv527629 1 37791027 37796247 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704097 S 2026 0 1 "" nsv519553 1 37857934 37861630 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv658587,nssv678161,nssv676228,nssv694242,nssv656833 M 2026 0 5 "" nsv525226 1 37857934 37897309 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701315 S 2026 0 1 "" nsv510 1 37949142 38014697 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5491,nssv1091 M 9 2 0 "" NA19129,NA19240 nsv506927 1 37951838 37957838 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623268,nssv620652,nssv619232 M 4 3 0 "" NA10860,NA15510,NA18994 nsv522 1 38161745 38196291 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2925 S 9 1 0 "" NA18555 nsv521856 1 38161997 38168736 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694630 S 2026 0 1 "" nsv441687 1 38311130 38313958 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv519358 1 38340499 38342336 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694325 S 2026 0 1 "" nsv834757 1 38346243 38539985 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444651 S 95 1 0 "" nsv533 1 38357621 38372178 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9028 S 9 0 1 "" NA12156 nsv544 1 38374840 38381444 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5499 S 9 1 0 "" NA19129 nsv834768 1 38430837 38622055 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444662 S 95 1 0 "" nsv517641 1 38519432 38522117 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv688984,nssv693048,nssv694835,nssv684558,nssv652648,nssv685154 M 2026 6 0 "" nsv521479 1 38591146 38597585 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694450 S 2026 1 0 "" nsv555 1 38651951 38686942 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4141 S 9 1 0 "" NA12878 nsv508008 1 38751703 38757703 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618492 S 4 0 1 "" CHM nsv10117 1 38797429 38807439 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18773 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18972 dgv48e1 1 38797694 38806748 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2944,essv3576,esv1377,essv1696 M 271 0 0 "" NA18968,NA18972,NA18987 nsv441688 1 38797697 38805298 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv818145 1 38803735 38806165 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417575 S 112 0 1 "" NA18972 nsv461095 1 38803973 38841381 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537543 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00157 nsv526972 1 38917806 38920057 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703344 S 2026 1 0 "" nsv518731 1 39064976 39065517 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696181 S 2026 0 1 "" nsv515793 1 39240304 39247625 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv693049,nssv657487,nssv694005,nssv678265,nssv692912,nssv664813 M 2026 0 6 "" esv32941 1 39272930 39273815 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99758 S 51 0 1 "" 22086 nsv506928 1 39480985 39486985 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620653 S 4 1 0 "" NA15510 nsv7177 1 39614847 39936383 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10825,nssv6576,nssv5516 M 9 0 0 "" NA12156,NA18956,NA19129 nsv508160 1 39637823 39699639 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617344 S 4 0 1 "" CHM nsv829649 1 39640048 39773607 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444673,nssv1444684 M 95 0 2 "" nsv566 1 39725551 39758832 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9038 S 9 1 0 "" NA12156 nsv160826 1 39741824 39742179 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv179404 M 24 "" nsv518544 1 39775188 39781703 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695987 S 2026 0 1 "" nsv577 1 39779114 39811605 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2085 S 9 1 0 "" NA18555 dgv15n27 1 39853826 39975991 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv461117,nsv461106 M 1557 2 0 "" 1780854592_A,1780862460_A dgv49e1 1 39894236 40329525 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv416,essv10251 M 271 0 0 "" NA19152 nsv159700 1 40057668 40064635 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178278 M 24 "" nsv523913 1 40145894 40168395 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699756 S 2026 0 1 "" esv2750836 1 40172872 40228341 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6981953,essv6988472 M 771 1 0 "" BEC_508 nsv517028 1 40185489 40204160 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv671364,nssv651735,nssv663352,nssv653640 M 2026 4 0 "" nsv588 1 40201136 40206643 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10831 S 9 1 0 "" NA18956 nsv829660 1 40207797 40401173 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444762,nssv1444695,nssv1444985,nssv1444974,nssv1444963,nssv1444706,nssv1444852,nssv1445074,nssv1444951,nssv1444773,nssv1444839,nssv1445085,nssv1444996,nssv1444728,nssv1444784,nssv1445007,nssv1445018,nssv1445096,nssv1444795,nssv1444863,nssv1444828,nssv1444885,nssv1444918,nssv1444740,nssv1445107,nssv1445062,nssv1445029,nssv1444907,nssv1445040,nssv1445118,nssv1444874,nssv1444806,nssv1444751,nssv1445051,nssv1444717,nssv1444896,nssv1444940,nssv1444817,nssv1445129,nssv1444929 M 95 3 37 "" nsv10128 1 40217103 40222832 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14094 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18975 nsv521874 1 40305480 40357272 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694106 S 2026 0 1 "" nsv441689 1 40635272 40638757 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv160971 1 40690778 40697716 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv179549 M 24 "" nsv516619 1 40691069 40695842 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv672519,nssv666888,nssv671657,nssv680334,nssv667789,nssv653231,nssv690948,nssv690433,nssv662673,nssv672295,nssv673153,nssv691007,nssv689534,nssv654770,nssv664864,nssv684450,nssv689850,nssv666582,nssv663616 M 2026 0 19 "" nsv599 1 40749661 40783026 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9047 S 9 0 1 "" NA12156 nsv610 1 40892964 40924643 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9053 S 9 1 0 "" NA12156 dgv16n27 1 41012701 41052931 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv461150,nsv461206,nsv461272,nsv461228,nsv461195,nsv461161,nsv461261,nsv461295,nsv461173,nsv461217,nsv461284,nsv461239,nsv461250,nsv461184,nsv461328,nsv461139,nsv461306 M 1557 17 0 "" 1780854436_A,1780862125_A,1780862346_A,1780862443_A,1780862551_A,1798860192_A,1798860336_A,HGDP00082,HGDP00319,HGDP00513,HGDP00614,HGDP00624,HGDP00628,HGDP01153,NINDS_18,NINDS_238,NINDS_98 nsv441690 1 41016300 41045593 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv516272 1 41016321 41043536 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv667238,nssv654797,nssv689447,nssv679939 M 2026 4 0 "" nsv818156 1 41016321 41043536 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417960,nssv1417961 M 112 2 0 "" NA07348,NA07357 nsv461339 1 41023774 41043243 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537738 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00615 nsv522723 1 41061311 41064791 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698354 S 2026 0 1 "" nsv159614 1 41067854 41069062 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178192 M 24 "" nsv621 1 41133115 41146630 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9060 S 9 0 1 "" NA12156 nsv519146 1 41251099 41262091 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696623 S 2026 1 0 "" nsv508171 1 41473976 41643773 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622762 S 4 0 1 "" NA18994 nsv524868 1 41530476 41531218 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700873 S 2026 0 1 "" nsv633 1 41614591 41659711 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9065 S 9 0 1 "" NA12156 nsv525172 1 41616837 41622001 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701248 S 2026 0 1 "" nsv461350 1 41616837 41640305 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537744 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00433 nsv644 1 41676248 41709751 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9073 S 9 1 0 "" NA12156 nsv518313 1 41740531 41744360 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695744 S 2026 0 1 "" nsv655 1 41763065 41795558 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2095 S 9 1 0 "" NA18555 nsv461361 1 41834224 41867669 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537752 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00553 nsv517842 1 41930982 41940256 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695246 S 2026 0 1 "" nsv666 1 41959743 41971049 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9081 S 9 0 1 "" NA12156 nsv677 1 42046158 42079733 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5517 S 9 1 0 "" NA19129 nsv829671 1 42090138 42249691 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445140 S 95 0 1 "" nsv519479 1 42185863 42259196 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv671865,nssv656348 M 2026 2 0 "" nsv527531 1 42286125 42304598 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703990 S 2026 0 1 "" nsv688 1 42302961 42337564 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2935 S 9 1 0 "" NA18555 nsv829682 1 42724193 42908332 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445151 S 95 0 1 "" nsv461372 1 43025304 43029593 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537763 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01029 nsv699 1 43041557 43075603 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4150 S 9 1 0 "" NA12878 nsv710 1 43204213 43249014 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9088 S 9 0 1 "" NA12156 nsv522391 1 43215913 43245414 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695171 S 2026 1 0 "" nsv518211 1 43228030 43265477 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695634 S 2026 0 1 "" nsv519062 1 43257991 43275824 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696534 S 2026 0 1 "" nsv829693 1 43264221 43447741 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445162 S 95 0 1 "" nsv461383 1 43333212 43364801 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537771 S 1557 0 1 "" 1780854205_A nsv523115 1 43369063 43375054 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698814 S 2026 0 1 "" nsv508009 1 43400352 43406352 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624209 S 4 0 1 "" NA18994 nsv508010 1 43508261 43514261 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624210,nssv618493,nssv621466 M 4 0 3 "" CHM,NA15510,NA18994 nsv159253 1 43526564 43526899 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv177831 M 24 "" nsv527798 1 43581683 43586502 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704290 S 2026 0 1 "" nsv438377 1 43586502 43602782 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470629,nssv470518 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA18853,NA18854 nsv519570 1 43674373 43741159 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705110,nssv656910,nssv675620,nssv703017,nssv673331,nssv657034,nssv682477,nssv686669,nssv660985,nssv674625,nssv662069 M 2026 0 11 "" nsv159510 1 43760946 43763302 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178088 M 24 "" nsv441691 1 43764793 43774741 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv721 1 43973559 44007469 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1100 S 9 1 0 "" NA19240 nsv732 1 44111455 44127564 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10840 S 9 1 0 "" NA18956 nsv519538 1 44137328 44138124 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv661267,nssv656769,nssv681965 M 2026 0 3 "" nsv829704 1 44156492 44322197 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445429,nssv1445362,nssv1445296,nssv1445407,nssv1445351,nssv1445207,nssv1445240,nssv1445273,nssv1445395,nssv1445196,nssv1445384,nssv1445329,nssv1445284,nssv1445218,nssv1445251,nssv1445318,nssv1445173,nssv1445418,nssv1445262,nssv1445307,nssv1445340,nssv1445373,nssv1445440,nssv1445185,nssv1445229 M 95 0 25 "" nsv158965 1 44335830 44335830 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv177543 M 24 "" nsv508011 1 44369168 44375168 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618494 S 4 0 1 "" CHM nsv829715 1 44441402 44616883 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445484,nssv1445506,nssv1445518,nssv1445529,nssv1445584,nssv1445562,nssv1445551,nssv1445462,nssv1445573,nssv1445595,nssv1445451,nssv1445606,nssv1445617,nssv1445629,nssv1445640,nssv1445651,nssv1445495,nssv1445662,nssv1445540,nssv1445473 M 95 20 0 "" nsv461395 1 44568091 44789058 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537782 S 1557 1 0 "" 1780854105_A nsv744 1 44648873 44682342 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4160 S 9 1 0 "" NA12878 nsv461406 1 44887635 44962611 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537793 S 1557 0 1 "" 1780854339_A nsv524385 1 45157684 45160597 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700302 S 2026 0 1 "" esv2750837 1 45465208 45577356 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6984095,essv6984094 M 771 0 1 "" BEC_774 nsv829726 1 45566674 45772279 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445673 S 95 0 1 "" nsv159558 1 45919316 45919627 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178136 M 24 "" nsv461417 1 45935106 46128368 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537804 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01189 nsv524147 1 45948118 46150096 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700026 S 2026 1 0 "" nsv437479 1 45984899 46123166 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467360 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA07029 nsv10139 1 46064481 46089791 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19103 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18972 nsv829737 1 46064920 46218444 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445884,nssv1445717,nssv1445728,nssv1445740,nssv1445817,nssv1445917,nssv1445751,nssv1445862,nssv1445828,nssv1445762,nssv1445895,nssv1445773,nssv1445851,nssv1445839,nssv1445784,nssv1445906,nssv1445706,nssv1445928,nssv1445795,nssv1445873,nssv1445684,nssv1445806,nssv1445695 M 95 23 0 "" nsv522438 1 46174901 46213013 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705796 S 2026 0 1 "" nsv515934 1 46205480 46214856 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv661378,nssv700228,nssv702190,nssv689962,nssv665376,nssv676725 M 2026 0 6 "" nsv508012 1 46252129 46258129 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621467 S 4 0 1 "" NA15510 nsv527878 1 46361066 46372315 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704379 S 2026 1 0 "" nsv829748 1 46436528 46588142 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445939 S 95 0 1 "" nsv159955 1 46525563 46532347 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178533 M 24 "" nsv755 1 46721337 46753050 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10857 S 9 1 0 "" NA18956 nsv522319 1 46792761 46806287 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695099 S 2026 0 1 "" nsv525401 1 47030420 47041667 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701524 S 2026 0 1 "" nsv461428 1 47199605 47236284 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537815 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00674 nsv441692 1 47425681 47441108 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" esv33183 1 47488251 47489374 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv95098 S 51 1 0 "" 21721 nsv160603 1 47770301 47770301 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv179181 M 24 "" nsv515678 1 47775370 47777039 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv664347,nssv672560,nssv682478 M 2026 0 3 "" nsv829760 1 47823146 48020208 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445950 S 95 0 1 "" nsv161055 1 47886120 47886203 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv179633 M 24 "" nsv515794 1 47886887 47889947 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694006,nssv662898,nssv690119,nssv680790,nssv664814,nssv673299,nssv662482,nssv660050,nssv661894,nssv691966,nssv691214 M 2026 0 11 "" nsv518055 1 47928649 47928906 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695466 S 2026 0 1 "" nsv461450 1 47948983 47994604 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537836 S 1557 0 1 "" 1780862021_A nsv766 1 48083240 48117444 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9101 S 9 1 0 "" NA12156 nsv522413 1 48186013 48195217 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695196 S 2026 1 0 "" nsv508182 1 48441951 48531487 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618972 S 4 0 1 "" NA10860 nsv461461 1 48629036 48689604 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537847 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00899 nsv777 1 48813495 48847154 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1118 S 9 1 0 "" NA19240 nsv829771 1 48890878 49072881 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445963 S 95 1 0 "" nsv521306 1 49040887 49041724 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697912 S 2026 0 1 "" nsv829782 1 49118762 49296259 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445974 S 95 0 1 "" nsv527526 1 49119315 49119417 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703981 S 2026 0 1 "" nsv509235 1 49133440 49141667 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621094 S 4 1 0 "" NA15510 nsv788 1 49133444 49143065 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4179 S 9 1 0 "" NA12878 nsv799 1 49167916 49200431 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5553 S 9 1 0 "" NA19129 nsv829793 1 49220295 49372739 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445985,nssv1445996 M 95 2 0 "" nsv525248 1 49292307 49293026 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701341 S 2026 0 1 "" nsv516709 1 49640509 49661026 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv681185,nssv678041,nssv670303,nssv661313 M 2026 0 4 "" nsv518328 1 49640509 49714185 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695758 S 2026 0 1 "" nsv829804 1 49758135 49944084 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446007 S 95 0 1 "" nsv829815 1 49841200 50034029 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446018,nssv1446029 M 95 2 0 "" nsv521615 1 50005441 50168857 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698233 S 2026 0 1 "" nsv160710 1 50197029 50200306 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv179288 M 24 "" nsv810 1 50212281 50261244 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2121 S 9 0 1 "" NA18555 nsv829826 1 50271832 50453162 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446051,nssv1446040 M 95 2 0 "" nsv528957 1 50478002 50534934 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705653 S 2026 0 1 "" nsv821 1 50811092 50844471 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9112 S 9 1 0 "" NA12156 nsv832 1 50881243 50926132 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9118 S 9 0 1 "" NA12156 nsv526838 1 51182263 51187509 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703195 S 2026 0 1 "" nsv518552 1 51720174 51728734 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695995 S 2026 0 1 "" nsv159730 1 51737565 51741745 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178308 M 24 "" nsv508193 1 51912181 51915815 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622763 S 4 0 1 "" NA18994 nsv519495 1 52005591 52010172 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696883 S 2026 0 1 "" nsv829837 1 52017856 52126759 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446129,nssv1446284,nssv1446162,nssv1446273,nssv1446340,nssv1446240,nssv1446207,nssv1446173,nssv1446185,nssv1446329,nssv1446151,nssv1446218,nssv1446062,nssv1446351,nssv1446118,nssv1446307,nssv1446074,nssv1446318,nssv1446085,nssv1446229,nssv1446096,nssv1446296,nssv1446251,nssv1446262,nssv1446362,nssv1446196,nssv1446107,nssv1446140 M 95 0 28 "" nsv843 1 52063816 52104707 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9125,nssv1136,nssv5554,nssv2131,nssv4189 M 9 5 0 "" NA12156,NA12878,NA18555,NA19129,NA19240 nsv829848 1 52080632 52253720 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446518,nssv1446384,nssv1446373,nssv1446440,nssv1446451,nssv1446407,nssv1446429,nssv1446462,nssv1446484,nssv1446495,nssv1446506,nssv1446540,nssv1446395,nssv1446418,nssv1446473,nssv1446529 M 95 0 16 "" nsv509246 1 52080675 52116971 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617994,nssv619794,nssv621095 M 4 3 0 "" CHM,NA10860,NA15510 nsv855 1 52333212 52365567 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5571 S 9 1 0 "" NA19129 nsv527810 1 52768618 52771127 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704304 S 2026 0 1 "" dgv50e1 1 52838036 53001202 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv335,essv1203 M 271 0 0 "" NA18951 nsv829859 1 52901163 53102966 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446573,nssv1446562,nssv1446584,nssv1446551 M 95 0 4 "" nsv866 1 52984988 53023129 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9134 S 9 0 1 "" NA12156 nsv10150 1 53195495 53200583 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19433 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18972 nsv441693 1 53200471 53201761 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv51e1 1 53200585 53244138 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv11349,esv1097 M 271 0 0 "" NA19128 nsv522862 1 53216432 53279742 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698517 S 2026 0 1 "" essv13816 1 53226518 53242389 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18853 nsv516780 1 53232147 53279742 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv670772,nssv660861,nssv686801,nssv687629,nssv703091,nssv701768,nssv660166,nssv672612,nssv700439,nssv692841,nssv675520 M 2026 1 10 "" nsv818167 1 53247499 53254814 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417740 S 112 0 1 "" NA19003 nsv160120 1 53276957 53276957 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178698 M 24 "" nsv526458 1 53340583 53340836 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702761 S 2026 1 0 "" nsv520450 1 53340836 53342552 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv680733,nssv684433,nssv671581 M 2026 3 0 "" esv2422213 1 53357584 53436460 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161539 S 181 1 0 "" ND01562 nsv829871 1 53378564 53560741 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446595 S 95 0 1 "" nsv509258 1 53437532 53463648 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619795 S 4 1 0 "" NA10860 nsv461483 1 53471093 53554120 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537868 S 1557 1 0 "" NINDS_15 nsv509269 1 53474329 53760790 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619797,nssv619799,nssv619800,nssv619798 M 4 1 0 "" NA10860 nsv159942 1 53530954 53532294 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178520 M 24 "" nsv877 1 53627599 53660925 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9140 S 9 1 0 "" NA12156 nsv829882 1 53627686 53807634 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446606,nssv1446617 M 95 0 2 "" dgv52e1 1 53630573 53741257 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv6044,essv1281,essv20362,essv18625,essv21735,essv16908,essv22593,essv12656,essv19216,essv6235,essv13482,esv443,essv9327,essv13901,essv16791,essv15670,essv3947,essv7858,essv1994,essv23892,essv7523 M 271 0 0 "" NA07348,NA10830,NA10838,NA12234,NA12248,NA12814,NA18500,NA18545,NA18558,NA18571,NA18636,NA18853,NA18854,NA18872,NA18912,NA18949,NA18970,NA18995,NA19192,NA19205 nsv888 1 53649226 53686315 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6602 S 9 0 1 "" NA12156 nsv527806 1 53677087 53688209 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704300 S 2026 0 1 "" nsv522165 1 53684070 53717081 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694938 S 2026 0 1 "" nsv10162 1 53712284 53714709 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13430 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18853 nsv899 1 53752177 53787509 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4208 S 9 1 0 "" NA12878 nsv509280 1 53817689 53886974 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619801 S 4 1 0 "" NA10860 nsv461494 1 53838725 53873566 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537879 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01290 nsv461506 1 53864724 53901689 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537890 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00515 nsv516392 1 54080274 54081751 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv663460,nssv686306,nssv679576,nssv677077,nssv671284,nssv662307,nssv668000,nssv691801 M 2026 0 8 "" dgv17n27 1 54290422 54303343 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv461528,nsv461517 M 1557 2 0 "" 1780854105_A,1780854558_A nsv461539 1 54296299 54310296 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537919 S 1557 0 1 "" 1780862412_A dgv5n21 1 54325390 54327620 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv524287,nsv520256 M 2026 0 7 "" nsv829893 1 54460877 54654714 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446629 S 95 0 1 "" nsv509291 1 54474163 54588688 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619802 S 4 1 0 "" NA10860 nsv461550 1 54481350 54499430 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537929 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00857 nsv461561 1 54581837 55065391 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537939 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00764 nsv461572 1 54696128 54782007 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537947 S 1557 1 0 "" 1780854017_A nsv829904 1 54726307 54899078 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446640 S 95 0 1 "" nsv461583 1 54736949 54761827 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537958 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01195 nsv516654 1 54758060 54790067 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv684126,nssv680692,nssv669917,nssv682791 M 2026 0 4 "" nsv461594 1 54771316 54935211 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537968 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01101 nsv910 1 54783480 54841016 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6611,nssv2142 M 9 0 2 "" NA12156,NA18555 esv33550 1 54800919 54818646 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100678,essv94059,essv94047,essv97050,essv97032,essv93059,essv101671,essv97113,essv100011,essv99560 M 51 4 4 "" 21656,21802,21817,21863,21909,22075,22086,22335 nsv461605 1 54831536 54862485 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537979 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00031 dgv53e1 1 54981672 55020630 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1261,essv8508 M 271 0 0 "" NA18854 nsv160901 1 54986685 54986685 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv179479 M 24 "" nsv829915 1 55006634 55170384 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446651 S 95 1 0 "" essv12120 1 55006743 55016857 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19173 dgv54e1 1 55006743 55020630 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv8408,essv8896 M 271 0 0 "" NA19093,NA19171 nsv10173 1 55012686 55018634 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13760,nssv16439 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18853,NA19173 nsv441694 1 55013844 55017437 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv523732 1 55091960 55097748 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699548 S 2026 1 0 "" nsv515980 1 55097607 55097748 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv656770,nssv682312,nssv691742,nssv665573 M 2026 4 0 "" nsv527361 1 55097607 55109427 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703791 S 2026 1 0 "" nsv506929 1 55198597 55204597 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620654 S 4 1 0 "" NA15510 nsv523036 1 55208016 55208152 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698719 S 2026 0 1 "" nsv527129 1 55212450 55236005 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703514 S 2026 0 1 "" nsv518539 1 55212450 55265575 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695983 S 2026 0 1 "" nsv518638 1 55221893 55238317 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696087 S 2026 0 1 "" nsv527707 1 55228025 55238317 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704186 S 2026 0 1 "" nsv517995 1 55236005 55238317 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv678581,nssv655142 M 2026 0 2 "" nsv525879 1 55269088 55343671 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702079 S 2026 0 1 "" nsv921 1 55355543 55388968 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5572 S 9 1 0 "" NA19129 nsv437209 1 55431032 55443754 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467090 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19094 nsv10184 1 55440776 55796854 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14073,nssv16769 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA07048,NA19173 nsv517685 1 55565008 55572582 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv666200,nssv667056,nssv679069,nssv690335,nssv684636,nssv691008,nssv666543,nssv672297,nssv653812,nssv655580,nssv664077,nssv656318,nssv672800,nssv678181,nssv693159,nssv668001,nssv654230,nssv664967,nssv652613 M 2026 0 19 "" nsv160526 1 55686744 55686797 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv179104 M 24 "" nsv523489 1 55750428 55778524 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699256 S 2026 1 0 "" nsv461617 1 55767211 55835531 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537991 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00279 nsv522334 1 55780197 55780415 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695114 S 2026 0 1 "" nsv528352 1 55780197 55780415 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704937 S 2026 1 0 "" nsv526148 1 55813618 55858471 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702406 S 2026 1 0 "" nsv829926 1 55900513 56072766 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446662 S 95 1 0 "" nsv527396 1 55981842 55992930 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703831 S 2026 0 1 "" nsv161096 1 56113315 56113635 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv179674 M 24 "" nsv528440 1 56124102 56132214 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705035 S 2026 0 1 "" nsv516750 1 56440267 56443701 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv670628,nssv689111 M 2026 0 2 "" nsv524251 1 56502794 56503630 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700147 S 2026 1 0 "" nsv932 1 56528753 56554282 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4216 S 9 0 1 "" NA12878 nsv508204 1 56542865 56552878 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617438 S 4 0 1 "" CHM nsv528673 1 56760982 56771592 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705311 S 2026 0 1 "" nsv523032 1 56828930 56961579 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698715 S 2026 1 0 "" nsv520726 1 56856007 56917687 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv674816,nssv677255 M 2026 0 2 "" nsv160326 1 56954647 56954985 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178904 M 24 "" nsv508215 1 57031481 57063171 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617461 S 4 0 1 "" CHM nsv10195 1 57259022 57262721 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14090 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18853 nsv10206 1 57264976 57271131 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14403,nssv12117,nssv11765,nssv17734 M 31 3 1 Samples from several populations that are part of the HapMap project. "" NA07048,NA10839,NA10847,NA19132 nsv526087 1 57288459 57291631 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702333 S 2026 0 1 "" nsv943 1 57410174 57437079 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4224 S 9 1 0 "" NA12878 nsv954 1 57535161 57577820 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9167 S 9 0 1 "" NA12156 nsv966 1 57598016 57627778 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5589 S 9 1 0 "" NA19129 nsv508013 1 57601944 57607944 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618495 S 4 0 1 "" CHM nsv523574 1 57730124 57799810 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699357 S 2026 0 1 "" nsv829937 1 57970309 58118527 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446673 S 95 1 0 "" nsv977 1 58047757 58079943 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4236,nssv9983 M 9 2 0 "" NA12878,NA18956 nsv527673 1 58238256 58243648 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704148 S 2026 0 1 "" nsv525581 1 58295000 58310247 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701720 S 2026 0 1 "" nsv516742 1 58434331 58445071 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv693252,nssv694369,nssv670576 M 2026 3 0 "" nsv159018 1 58455931 58456843 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv177596 M 24 "" nsv988 1 58484644 58496032 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9172 S 9 1 0 "" NA12156 nsv818178 1 58507854 58514629 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415560 S 112 0 1 "" NA06993 nsv829948 1 58515702 58683401 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446684 S 95 1 0 "" nsv999 1 58531035 58561791 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9989 S 9 1 0 "" NA18956 nsv517087 1 58545779 58545932 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv653763,nssv686889 M 2026 0 2 "" nsv1010 1 58785346 58819244 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2955 S 9 1 0 "" NA18555 nsv1021 1 58903528 58937198 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5590 S 9 1 0 "" NA19129 nsv829959 1 59052351 59215106 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446795,nssv1446751,nssv1446762,nssv1446695,nssv1446784,nssv1446728,nssv1446717,nssv1446706,nssv1446740,nssv1446773 M 95 10 0 "" nsv829970 1 59259123 59423182 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446806 S 95 1 0 "" nsv1032 1 59423122 59468206 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9179 S 9 0 1 "" NA12156 nsv829982 1 59424869 59544813 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446817 S 95 0 1 "" nsv461639 1 59687391 59783410 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538007 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01171 nsv523577 1 59705007 59783410 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699363 S 2026 0 1 "" nsv1043 1 59739138 59784013 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9187 S 9 0 1 "" NA12156 nsv441695 1 59755943 59770300 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv829993 1 59841047 59863997 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446839,nssv1446851,nssv1446828,nssv1446862 M 95 0 4 "" nsv520494 1 60323050 60340467 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694080 S 2026 0 1 "" nsv524844 1 60381997 60389469 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700846 S 2026 0 1 "" nsv524288 1 60389469 60393894 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700188 S 2026 0 1 "" nsv506930 1 60531949 60537949 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617530 S 4 1 0 "" CHM nsv1054 1 60717190 60750626 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9195 S 9 1 0 "" NA12156 nsv521131 1 61048550 61049311 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697805 S 2026 0 1 "" nsv1065 1 61359552 61386704 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5607 S 9 1 0 "" NA19129 nsv1077 1 61509898 61543738 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2961 S 9 1 0 "" NA18555 nsv161106 1 61671526 61675390 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv179684 M 24 "" nsv1088 1 61765587 61798449 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5608 S 9 1 0 "" NA19129 nsv160205 1 61794879 61795722 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178783 M 24 "" nsv508226 1 61803114 61852625 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620129 S 4 0 1 "" NA15510 esv33569 1 61825811 61831251 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101554,essv98900,essv93876,essv100819,essv101009,essv95067,essv98249,essv94787,essv101360,essv94333,essv96959,essv97907,essv95593,essv95336,essv101746,essv95902,essv94548,essv99054,essv92690,essv96119,essv98576,essv93538,essv93198,essv99713,essv94975,essv99183,essv98465,essv94265 M 51 25 3 "" 21603,21606,21634,21656,21693,21721,21772,21791,21805,21808,21817,21837,21841,21872,21909,21911,21932,21938,21944,22007,22085,22128,22170,22217,22231,22275,22352,22394 nsv442877 1 61826027 61830208 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv830004 1 61954965 62094249 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446873 S 95 1 0 "" nsv1099 1 61987338 62027964 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9211 S 9 0 1 "" NA12156 dgv6n21 1 61991615 62229968 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv522020,nsv518627 M 2026 0 2 "" nsv159038 1 62102608 62102956 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv177616 M 24 "" nsv1110 1 62107744 62166456 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9296 S 9 0 1 "" NA18517 nsv437210 1 62131748 62160266 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467091 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19205 nsv10217 1 62145925 62165225 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12447,nssv16110,nssv16424 M 31 0 3 Samples from several populations that are part of the HapMap project. "" NA18517,NA19132,NA19221 nsv517696 1 62148950 62153809 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv675663,nssv665354,nssv673772,nssv664719,nssv664968,nssv671365,nssv676169,nssv661867,nssv654435,nssv660368,nssv662958,nssv694621,nssv665406,nssv681293,nssv654241,nssv689496,nssv682090,nssv666544,nssv685685 M 2026 0 19 "" nsv437211 1 62148950 62160266 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467092 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19221 nsv818189 1 62149893 62153809 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418426 S 112 0 1 "" NA19192 nsv438388 1 62153809 62155267 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470851,nssv470962,nssv470991,nssv470740,nssv470980,nssv471002 M 269 0 6 Samples from several populations that are part of the HapMap project. "" NA19098,NA19100,NA19203,NA19205,NA19221,NA19222 nsv520333 1 62478548 62481908 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv672010,nssv662976,nssv676248 M 2026 0 3 "" nsv525191 1 62485724 62516740 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701270 S 2026 0 1 "" nsv159028 1 62863857 62864195 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv177606 M 24 "" nsv830015 1 62973164 63167317 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446895,nssv1446884 M 95 2 0 "" nsv1121 1 63086239 63120758 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4256 S 9 1 0 "" NA12878 nsv522407 1 63104686 63108137 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695188 S 2026 1 0 "" nsv461661 1 63153782 63321408 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538022 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00901 nsv160360 1 63173972 63173972 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178938 M 24 "" nsv159348 1 63194063 63198368 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv177926 M 24 "" nsv160331 1 63223702 63223702 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178909 M 24 "" nsv461672 1 63465757 63714877 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538033 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00935 nsv1132 1 63546396 63564792 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6639 S 9 0 1 "" NA12156 nsv830026 1 63654683 63672708 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446917,nssv1446928,nssv1446939,nssv1446906 M 95 1 3 "" nsv510935 1 63697231 63717512 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621650 S 4 0 0 "" NA15510 nsv1143 1 63748722 63779246 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5623 S 9 1 0 "" NA19129 nsv461683 1 63877566 63905218 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538043 S 1557 0 1 "" NINDS_172 nsv830037 1 64057394 64273389 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446950 S 95 1 0 "" nsv1154 1 64106348 64140746 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9224 S 9 0 1 "" NA12156 dgv55e1 1 64389169 64488417 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2543,esv492 M 271 0 0 "" NA19003 nsv830048 1 64545227 64722942 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446962 S 95 1 0 "" nsv442886 1 64554748 64563566 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv522029 1 64715490 64715799 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694120 S 2026 0 1 "" nsv508237 1 64834725 64856654 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620130 S 4 0 1 "" NA15510 nsv508249 1 64872984 64876099 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622764 S 4 0 1 "" NA18994 nsv159344 1 64899530 64904606 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv177922 M 24 "" nsv158935 1 64912353 64912449 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv177513 M 24 "" nsv525227 1 65021408 65080063 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701316 S 2026 0 1 "" nsv830059 1 65095751 65252182 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446973 S 95 0 1 "" nsv1165 1 65174922 65219387 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4638 S 9 0 1 "" NA19129 nsv522027 1 65337773 65345518 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694797 S 2026 0 1 "" nsv830070 1 65511942 65694675 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446984 S 95 1 0 "" nsv528808 1 65563780 65690938 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705482 S 2026 1 0 "" nsv830081 1 65598101 65774821 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446995 S 95 1 0 "" nsv160318 1 65621660 65621929 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178896 M 24 "" nsv1176 1 65624723 65669591 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9232 S 9 0 1 "" NA12156 nsv461705 1 65647515 65712055 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538062 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00972 nsv508260 1 65695333 65714319 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620131 S 4 0 1 "" NA15510 nsv1188 1 65708647 65759947 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9242,nssv4273 M 9 0 2 "" NA12156,NA12878 nsv437212 1 65881700 65897424 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467093 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19142 nsv516036 1 65882383 65884027 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv687281,nssv665855,nssv660026,nssv689389,nssv670460,nssv671693 M 2026 0 6 "" nsv159449 1 65886407 65889705 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178027 M 24 "" dgv3n17 1 65933777 65984157 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437214,nsv437215 M 60 0 2 "" NA18860,NA19173 nsv437216 1 65969437 65984157 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467097 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18857 nsv160460 1 65975931 65976263 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv179038 M 24 "" nsv506931 1 66277357 66283357 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619233 S 4 1 0 "" NA10860 nsv1199 1 66414001 66436641 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4283 S 9 1 0 "" NA12878 nsv461716 1 66447622 66478762 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538073 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01099 nsv159464 1 66540972 66541111 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178042 M 24 "" nsv159040 1 66541277 66543371 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv177618 M 24 "" nsv518353 1 66563168 66574513 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694063 S 2026 0 1 "" nsv521150 1 66563168 66617162 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694421 S 2026 0 1 "" nsv520534 1 66569045 66578062 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697473 S 2026 1 0 "" nsv461729 1 66657379 66674927 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538086 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00643 nsv461740 1 66667899 66681105 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538097 S 1557 0 1 "" 1798860592_A nsv524963 1 66672736 66673143 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700984 S 2026 0 1 "" nsv518465 1 66698398 66700607 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694064 S 2026 1 0 "" nsv1210 1 66729316 66745224 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9249 S 9 0 1 "" NA12156 nsv1221 1 66759929 66804717 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7152 S 9 0 1 "" NA12156 nsv1232 1 66784931 66800466 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2965 S 9 1 0 "" NA18555 nsv160302 1 66791038 66792830 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178880 M 24 "" nsv830093 1 66885615 67060285 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447006 S 95 1 0 "" nsv818200 1 66980663 66994210 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417530 S 112 1 0 "" NA18968 nsv519580 1 66994210 67006164 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv656960,nssv705456,nssv662308,nssv662919,nssv676630,nssv677440,nssv698683 M 2026 0 7 "" nsv461751 1 67191619 67401057 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538108 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01099 nsv506932 1 67207178 67213178 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619234 S 4 1 0 "" NA10860 nsv461762 1 67263230 67360481 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538118 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01368 nsv1243 1 67412310 67457358 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7157 S 9 0 1 "" NA12156 nsv10228 1 67504414 67508192 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19763 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18972 nsv461773 1 67534398 67620665 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538129 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00047 nsv1254 1 67572185 67606050 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1162 S 9 1 0 "" NA19240 nsv524576 1 67649772 67658423 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700532 S 2026 1 0 "" nsv1265 1 67747281 67771053 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2160 S 9 1 0 "" NA18555 esv33021 1 67753363 67753553 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99498 S 51 0 1 "" 22335 esv32529 1 67782435 67783243 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99297 S 51 1 0 "" 22275 esv33652 1 67783126 67783430 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100924,essv97866,essv92756 M 51 3 0 "" 21693,21837,21944 nsv517964 1 67783403 67785662 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695376 S 2026 0 1 "" nsv516001 1 67784948 67785662 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv692601,nssv678642,nssv665657 M 2026 0 3 "" nsv521648 1 67817207 67818526 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698266 S 2026 0 1 "" nsv1276 1 67861657 67875689 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7165 S 9 0 1 "" NA12156 nsv830104 1 67977354 68147767 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447017 S 95 1 0 "" nsv517355 1 68289420 68294020 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv673300,nssv701730,nssv666740,nssv684789,nssv678466,nssv669270,nssv687389,nssv675437,nssv688322,nssv677762,nssv682691,nssv654685,nssv654659,nssv695869,nssv653232,nssv672344,nssv673553,nssv676840,nssv651805,nssv651879,nssv678266,nssv670773,nssv679887,nssv679212,nssv690120,nssv669543,nssv672613,nssv667280,nssv658667,nssv681325,nssv652333,nssv685631,nssv701342,nssv658487,nssv677716,nssv658373,nssv669618 M 2026 2 35 "" nsv522414 1 68293861 68294603 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695197 S 2026 0 1 "" nsv522557 1 68352374 68355112 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705939 S 2026 0 1 "" nsv518820 1 68366297 68379704 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696273 S 2026 0 1 "" nsv508014 1 68448225 68454225 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621468,nssv624211,nssv622289 M 4 0 3 "" NA10860,NA15510,NA18994 nsv506933 1 68493009 68499009 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619235,nssv617531,nssv620656,nssv623269 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv522218 1 68782473 68799338 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694145 S 2026 0 1 "" nsv527722 1 68924074 69035243 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704203 S 2026 0 1 "" nsv508271 1 69234743 69259390 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620132 S 4 0 1 "" NA15510 nsv508015 1 69252341 69258341 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624212 S 4 0 1 "" NA18994 nsv830115 1 69305515 69449016 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447028 S 95 1 0 "" nsv1287 1 69360736 69395648 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4293 S 9 1 0 "" NA12878 nsv1299 1 69399248 69444246 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7173 S 9 0 1 "" NA12156 nsv1310 1 69465557 69510654 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7182 S 9 0 1 "" NA12156 nsv1321 1 69513059 69558875 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6648 S 9 0 1 "" NA12156 nsv160388 1 69519014 69519332 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178966 M 24 "" nsv1332 1 69606376 69617239 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7197 S 9 0 1 "" NA12156 nsv830126 1 69726900 69880000 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447039 S 95 1 0 "" nsv461784 1 69943556 70018266 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538136 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01285 nsv521307 1 69994896 70000668 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697913 S 2026 0 1 "" nsv525370 1 70073854 70079108 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701490 S 2026 0 1 "" nsv526839 1 70171907 70187815 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703196 S 2026 1 0 "" dgv18n27 1 70187815 70279002 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv461806,nsv461795 M 1557 0 2 "" 1780862003_A,1780862459_A nsv1343 1 70377190 70409021 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10021 S 9 1 0 "" NA18956 nsv830137 1 70477942 70670739 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447050 S 95 0 1 "" nsv461828 1 70592738 70634381 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538174 S 1557 0 1 "" 1782681216_A nsv522935 1 70599204 70600122 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698598 S 2026 0 1 "" esv33887 1 70833840 70836579 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99773 S 51 0 1 "" 22086 nsv517877 1 70849957 70854223 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695284 S 2026 1 0 "" nsv526237 1 70854189 70857843 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702505 S 2026 0 1 "" nsv516651 1 71017099 71018770 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv669897,nssv656299 M 2026 0 2 "" nsv830148 1 71022387 71195953 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447061 S 95 1 0 "" nsv516212 1 71133585 71180514 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv655781,nssv666846,nssv680621 M 2026 0 3 "" nsv461851 1 71154647 71219562 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538190 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01303 nsv521769 1 71290463 71345740 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694536 S 2026 0 1 "" nsv818211 1 71315724 71345740 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417325 S 112 1 0 "" NA18608 nsv830159 1 71484329 71621881 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447074 S 95 1 0 "" dgv19n27 1 71561058 71649715 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv461862,nsv461873 M 1557 2 0 "" HGDP01234,HGDP01242 nsv830170 1 71568468 71720779 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447085 S 95 1 0 "" nsv526840 1 71624933 71630140 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703197 S 2026 1 0 "" nsv461895 1 71791919 71918820 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538221 S 1557 0 1 "" NINDS_130 nsv830181 1 71868004 72008599 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447096 S 95 1 0 "" nsv508016 1 72138350 72144350 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621469 S 4 0 1 "" NA15510 nsv1354 1 72143185 72187543 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2161 S 9 0 1 "" NA18555 nsv818223 1 72189242 72194666 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417531 S 112 1 0 "" NA18968 nsv528210 1 72318439 72371901 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704771 S 2026 0 1 "" nsv1365 1 72323056 72341953 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7205 S 9 0 1 "" NA12156 nsv830192 1 72328583 72518139 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447118,nssv1447129,nssv1447107 M 95 3 0 "" nsv516389 1 72333484 72369079 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv691817,nssv667959 M 2026 0 2 "" nsv461951 1 72346933 72419247 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538258 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01337 nsv508017 1 72424750 72430750 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622290 S 4 0 1 "" NA10860 nsv1376 1 72446599 72535407 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6658,nssv10026,nssv9515,nssv2178,nssv10935,nssv9301,nssv5633,nssv4300 M 9 0 8 "" NA12156,NA12878,NA15510,NA18507,NA18517,NA18555,NA18956,NA19129 nsv254 1 72447012 72535215 CNV Loss Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv254 S 1 0 1 "" NA15510 dgv56e1 1 72454417 72598834 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv18231,essv6573,essv5187,essv9974,essv15083,essv9072,essv20098,essv19971,essv8162,essv23019,esv340,essv13838,essv19534,essv7142,essv21429,essv18931,essv6180,essv20234 M 271 0 0 "" NA07048,NA12005,NA12057,NA12144,NA12717,NA12812,NA12813,NA12864,NA18532,NA18547,NA18611,NA18621,NA18854,NA19099,NA19129,NA19132,NA19206 esv33679 1 72458600 72462648 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98657,essv93634,essv99853 M 51 3 0 "" 21606,21972,22086 nsv830204 1 72461872 72650592 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447140 S 95 1 0 "" esv33344 1 72467192 72475693 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101491,essv97530,essv96756,essv95074,essv98257,essv94836,essv94014,essv101341,essv94402,essv96979,essv97870,essv95702,essv93101,essv95333,essv101618,essv95831,essv98939,essv92867,essv93632,essv96169,essv97186,essv98619,essv99981,essv93462,essv99643,essv94946,essv98037,essv100290,essv99539,essv94221 M 51 29 1 "" 21603,21616,21659,21721,21772,21791,21802,21805,21808,21817,21837,21841,21863,21872,21909,21911,21938,21939,21972,22007,22075,22085,22086,22128,22217,22231,22259,22300,22335,22394 nsv10239 1 72467220 72477025 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15100,nssv16440,nssv13768,nssv12427,nssv16754 M 31 0 5 Samples from several populations that are part of the HapMap project. "" NA11830,NA12802,NA18517,NA19144,NA19221 nsv510891 1 72467606 72531619 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618632 S 4 0 0 "" CHM nsv442903 1 72468134 72475391 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv508282 1 72475113 72531619 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622766 S 4 0 1 "" NA18994 nsv437222 1 72477137 72489594 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467103 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19154 dgv4n17 1 72477137 72500711 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437220,nsv437225 M 60 0 2 "" NA19129,NA19202 dgv5n17 1 72477137 72524461 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437218,nsv437217,nsv437221,nsv437223,nsv437219 M 60 0 5 "" NA18500,NA18506,NA18515,NA19145,NA19161 nsv10250 1 72478140 72524700 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14078,nssv14733,nssv13091,nssv13766,nssv12777,nssv15109,nssv17088,nssv13102,nssv15432,nssv14098,nssv17084,nssv12445,nssv14746,nssv14431,nssv15441,nssv20093,nssv14420,nssv14072,nssv15107,nssv14409,nssv17099,nssv18064,nssv14406,nssv12095 M 31 6 18 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10847,NA10863,NA12155,NA12740,NA12872,NA18502,NA18517,NA18552,NA18563,NA18564,NA18572,NA18853,NA18860,NA18942,NA18972,NA18980,NA19007,NA19132,NA19144,NA19173,NA19240 esv33765 1 72478515 72523662 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101535,essv101502,essv97459,essv96863,essv96793,essv96805,essv95163,essv95162,essv95155,essv95122,essv98333,essv98332,essv98320,essv94680,essv94652,essv94060,essv94053,essv93990,essv93973,essv101421,essv101418,essv101386,essv101311,essv96976,essv97063,essv97048,essv97044,essv97906,essv97814,essv95735,essv95578,essv95669,essv93164,essv93119,essv95308,essv95339,essv101620,essv101642,essv95805,essv95899,essv98989,essv98982,essv99057,essv99086,essv92860,essv92866,essv92926,essv92949,essv92699,essv93683,essv93637,essv93785,essv93716,essv96231,essv96205,essv98533,essv98631,essv100007,essv99978,essv99973,essv99921,essv93455,essv94914,essv94950,essv98050,essv98034,essv99317,essv99457,essv99564,essv98369,essv94191 M 51 4 25 "" 21603,21616,21659,21721,21772,21791,21802,21805,21817,21837,21841,21863,21872,21909,21911,21938,21939,21944,21972,22007,22085,22086,22128,22231,22259,22275,22335,22352,22394 nsv437860 1 72479773 72520572 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv471135,nssv471091,nssv471490,nssv471157,nssv471279,nssv471013,nssv471202,nssv471512,nssv471213,nssv471357,nssv471068,nssv471324,nssv471190,nssv471368,nssv471024,nssv471435,nssv471468,nssv471335,nssv471057,nssv471501,nssv471546,nssv471568,nssv471290,nssv471424,nssv471390,nssv471401,nssv471446,nssv471046,nssv471557,nssv471113,nssv471079,nssv471268,nssv471035,nssv471457,nssv471246,nssv471379,nssv471224,nssv471535,nssv471313,nssv471412,nssv471523,nssv471257,nssv471346,nssv471124,nssv471235,nssv471301,nssv471179,nssv471479,nssv471102,nssv471146,nssv471168 M 269 0 46 Samples from several populations that are part of the HapMap project. "" NA06985,NA06991,NA07000,NA07019,NA07022,NA07029,NA10830,NA10838,NA10839,NA10846,NA10851,NA10855,NA10857,NA10859,NA10860,NA10861,NA11832,NA11881,NA11993,NA11994,NA12003,NA12006,NA12043,NA12057,NA12145,NA12154,NA12707,NA12716,NA12740,NA12751,NA12864,NA12865,NA12873,NA12874,NA18500,NA18501,NA18506,NA18508,NA18515,NA18516,NA19143,NA19145,NA19160,NA19161,NA19200,NA19202 nsv442908 1 72480937 72523169 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv509313 1 72515903 72523831 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619805 S 4 1 0 "" NA10860 esv2422432 1 72533877 72860672 CNV Deletion Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161297 S 181 0 1 "" ND03704 nsv519970 1 72549260 72549511 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv659734,nssv689963 M 2026 0 2 "" nsv830215 1 72581070 72741808 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447151 S 95 1 0 "" nsv528366 1 72672032 72672552 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704953 S 2026 0 1 "" dgv3e55 1 72724200 72800200 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv2750838,esv2750839 M 771 0 2 "" SPC_133,SPC_155 nsv516582 1 72733264 72796242 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv672126,nssv677061,nssv669332,nssv705429,nssv702027 M 2026 2 3 "" nsv160576 1 72734603 72734658 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv179154 M 24 "" dgv57e1 1 72809121 72827226 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv965,essv7655 M 271 0 0 "" NA18632 dgv58e1 1 72893633 73019191 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv5463,esv108 M 271 0 0 "" NA18632 nsv10261 1 72968208 72970417 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18424 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA10839 nsv1387 1 73289025 73329680 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9306,nssv10030,nssv6666,nssv1195,nssv5641,nssv4310 M 9 6 0 "" NA12156,NA12878,NA18517,NA18956,NA19129,NA19240 nsv509324 1 73292625 73295720 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619806 S 4 1 0 "" NA10860 nsv509335 1 73301968 73301968 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623784 S 4 1 0 "" NA18994 dgv59e1 1 73325120 73487705 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv370,essv14340 M 271 0 0 "" NA19194 nsv10273 1 73392056 73424371 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13107,nssv14428 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA19132,NA19144 nsv441696 1 73393964 73423349 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv461962 1 73454040 73622076 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538269 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00760 nsv506934 1 73464589 73470589 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623270,nssv617532,nssv619236,nssv620657 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv506935 1 73567713 73573713 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623271 S 4 1 0 "" NA18994 nsv830226 1 73662160 73837324 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447162,nssv1447173 M 95 2 0 "" nsv830237 1 73888290 74064512 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447185 S 95 1 0 "" nsv508018 1 74035177 74041177 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618496 S 4 0 1 "" CHM nsv522147 1 74050551 74695856 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694920 S 2026 0 1 "" nsv1398 1 74065411 74110401 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7224 S 9 0 1 "" NA12156 nsv1411 1 74183406 74210584 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7232 S 9 0 1 "" NA12156 nsv523474 1 74411120 74506140 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699235 S 2026 0 1 "" nsv461984 1 74516854 74586492 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538287 S 1557 0 1 "" NINDS_142 nsv830248 1 74674412 74856479 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447196 S 95 0 1 "" nsv525557 1 74689726 74703665 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701696 S 2026 0 1 "" nsv830259 1 74801198 74953083 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447207 S 95 1 0 "" nsv461995 1 74845163 74878644 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538296 S 1557 1 0 "" 1780862074_A nsv509346 1 74902645 74916850 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617995 S 4 1 0 "" CHM nsv1422 1 74907657 74910313 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4320 S 9 1 0 "" NA12878 nsv1433 1 75117836 75150621 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6674 S 9 1 0 "" NA12156 nsv521974 1 75161613 75161990 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694115 S 2026 0 1 "" nsv508293 1 75203438 75253636 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620133 S 4 0 1 "" NA15510 nsv1444 1 75335695 75368749 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7244 S 9 1 0 "" NA12156 nsv1455 1 75524398 75576203 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1206,nssv10042,nssv4340,nssv5652,nssv2191 M 9 0 5 "" NA12878,NA18555,NA18956,NA19129,NA19240 nsv519329 1 75542459 76070612 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv655463,nssv693180 M 2026 2 0 "" nsv508304 1 75550793 75569447 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618973,nssv620134,nssv617481,nssv622767 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 dgv60e1 1 75698925 75899769 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv15895,esv715 M 271 0 0 "" NA19223 nsv830270 1 75714241 75745177 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447218,nssv1447229,nssv1447240,nssv1447251,nssv1447262 M 95 0 5 "" nsv159607 1 75723887 75724216 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178185 M 24 "" nsv10284 1 75791976 75794801 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16770 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19221 dgv61e1 1 75795429 75869007 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv7994,essv9523 M 271 0 0 "" NA19221,NA19223 nsv10295 1 75797427 75831313 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17100 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19221 dgv4e55 1 75806255 75833759 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv34562,esv34738 M 771 0 2 "" NA19221,NA19223 nsv830281 1 75807313 75963074 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447273 S 95 0 1 "" nsv10306 1 75831313 75840665 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17430 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19221 nsv10317 1 75845788 75847352 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16423 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18504 nsv1466 1 75992978 76011499 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7248 S 9 0 1 "" NA12156 nsv1477 1 76227984 76246360 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6683 S 9 0 1 "" NA12156 nsv521786 1 76237804 76247455 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694554 S 2026 0 1 "" nsv518927 1 76285635 76298293 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696392 S 2026 0 1 "" nsv522056 1 76285635 76310230 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694827 S 2026 0 1 "" nsv1488 1 76299643 76344656 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7263 S 9 0 1 "" NA12156 nsv523526 1 76407377 76433185 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699300 S 2026 0 1 "" nsv1499 1 76417002 76461709 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5659 S 9 0 1 "" NA19129 nsv462006 1 76538300 76754426 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538305 S 1557 0 1 "" 1780862125_A nsv462017 1 76652177 76694466 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538312 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00274 nsv462028 1 76660065 76688543 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538318 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00307 dgv20n27 1 76660065 76732007 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv462073,nsv462050,nsv462039,nsv462062 M 1557 0 4 "" HGDP00286,HGDP00290,HGDP00315,HGDP00326 nsv526433 1 76742785 76980236 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702736 S 2026 0 1 "" nsv508315 1 76752106 76846751 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618974 S 4 0 1 "" NA10860 nsv462084 1 76856202 76889210 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538338 S 1557 0 1 "" NINDS_130 nsv525417 1 76866340 76875914 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701541 S 2026 0 1 "" nsv520575 1 76878836 76908053 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv681294,nssv686480,nssv683796,nssv672724,nssv679416,nssv690063 M 2026 6 0 "" nsv508019 1 76887518 76893518 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622291,nssv624213,nssv621470 M 4 0 3 "" NA10860,NA15510,NA18994 nsv521661 1 76909039 76926021 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698278 S 2026 0 1 "" dgv62e1 1 76950439 77014906 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv19070,esv1232 M 271 0 0 "" NA11830 nsv10328 1 76955852 77005318 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12757 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA11830 nsv159626 1 77009979 77017424 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178204 M 24 "" nsv1510 1 77016641 77050894 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7272 S 9 1 0 "" NA12156 nsv160844 1 77017454 77017454 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv179422 M 24 "" nsv830292 1 77137592 77296328 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447284 S 95 0 1 "" nsv520629 1 77296867 77407875 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697526 S 2026 0 1 "" nsv525188 1 77367672 77407875 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701266 S 2026 0 1 "" nsv517088 1 77486434 77490629 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv681619,nssv653765,nssv671217,nssv656535 M 2026 0 4 "" nsv818234 1 77486434 77490629 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418348 S 112 0 1 "" NA19141 nsv441697 1 77486893 77491853 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" essv9537 1 77487035 77491857 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18861 dgv63e1 1 77487035 77500483 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv9513,esv1229 M 271 0 0 "" NA18521 nsv1522 1 77518855 77553329 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2983 S 9 1 0 "" NA18555 nsv521371 1 77611661 77624990 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697980 S 2026 0 1 "" nsv462095 1 77615632 77663481 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538348 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01164 nsv1533 1 77702525 77748300 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6692 S 9 0 1 "" NA12156 nsv830303 1 77802845 78020786 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447296 S 95 0 1 "" nsv508326 1 77896400 77946268 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618975 S 4 0 1 "" NA10860 nsv518855 1 78128690 78168376 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694281 S 2026 0 1 "" nsv159417 1 78291058 78291236 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv177995 M 24 "" nsv520237 1 78351265 78372144 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv662070,nssv673864 M 2026 0 2 "" nsv1544 1 78360512 78372993 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4351 S 9 0 1 "" NA12878 nsv1555 1 78506986 78518309 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9519 S 9 1 0 "" NA18507 nsv1566 1 78664566 78672849 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5669 S 9 1 0 "" NA19129 nsv830315 1 78720464 78912612 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447340,nssv1447307,nssv1447318,nssv1447329 M 95 4 0 "" nsv1577 1 78725332 78770596 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5680 S 9 0 1 "" NA19129 nsv526221 1 78909645 79199101 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702486 S 2026 0 1 "" nsv528328 1 79123785 79124429 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704910 S 2026 0 1 "" nsv462139 1 79183980 79231448 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538380 S 1557 0 1 "" 1782681195_A nsv522014 1 79196308 79196737 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694783 S 2026 0 1 "" nsv830326 1 79285400 79447688 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447351 S 95 1 0 "" nsv818245 1 79345088 79349347 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418129,nssv1418128 M 112 0 2 "" NA19143,NA19144 nsv1588 1 79497621 79531738 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1215 S 9 1 0 "" NA19240 nsv830337 1 79503900 79625262 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447362 S 95 1 0 "" dgv21n27 1 79547087 79589056 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv462150,nsv462161,nsv462173 M 1557 0 3 "" HGDP00461,HGDP00472,HGDP00479 nsv1599 1 79634224 79662371 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4361 S 9 1 0 "" NA12878 nsv508337 1 79740000 79744481 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622768 S 4 0 1 "" NA18994 esv2750840 1 79781103 81555907 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6980803,essv6989199,essv6980804,essv6987852,essv6987853 M 771 0 1 "" BEC_175 nsv159019 1 79805582 79813334 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv177597 M 24 "" nsv160393 1 79933804 79935051 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178971 M 24 "" nsv160493 1 79983178 79983178 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv179071 M 24 "" nsv462184 1 80009971 80443589 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538407 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01308 nsv462195 1 80195995 80268836 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538416 S 1557 0 1 "" 1787431198_A nsv462206 1 80244459 80268836 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538426 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00241 nsv462217 1 80248819 80395627 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538434 S 1557 0 1 "" 1780854449_A nsv462261 1 80250210 80300687 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538471 S 1557 0 1 "" 1780862014_A nsv520795 1 80254099 80268836 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697615 S 2026 0 1 "" nsv519190 1 80268836 80275321 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696673 S 2026 0 1 "" nsv528189 1 80325236 80343252 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704746 S 2026 0 1 "" nsv1610 1 80329050 80361409 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10061 S 9 1 0 "" NA18956 nsv462272 1 80551299 80621438 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538482 S 1557 0 1 "" 1780862001_A nsv524609 1 80830908 80845637 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700570 S 2026 0 1 "" nsv1621 1 80839912 80885914 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6701 S 9 0 1 "" NA12156 nsv525106 1 80883962 80889546 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701166 S 2026 0 1 "" nsv1633 1 80884697 80917728 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5681 S 9 1 0 "" NA19129 nsv517432 1 80978024 80992331 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv687378,nssv672040,nssv660578,nssv665658,nssv664969,nssv652005,nssv689281,nssv664519,nssv670848,nssv683577 M 2026 0 10 "" nsv160614 1 81063550 81063550 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv179192 M 24 "" nsv1644 1 81093821 81147746 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4371,nssv10068,nssv1223,nssv6710 M 9 0 4 "" NA12156,NA12878,NA18956,NA19240 nsv524462 1 81098410 81098946 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700396 S 2026 0 1 "" nsv508348 1 81115513 81160423 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618977,nssv617489 M 4 0 2 "" CHM,NA10860 nsv510913 1 81115513 81160423 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621651 S 4 0 0 "" NA15510 nsv506936 1 81120190 81126190 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619237 S 4 1 0 "" NA10860 nsv830348 1 81161825 81308419 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447373 S 95 0 1 "" nsv1655 1 81243108 81288075 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7298 S 9 0 1 "" NA12156 nsv159917 1 81399806 81400134 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178495 M 24 "" nsv518182 1 81528506 81537146 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695603 S 2026 0 1 "" nsv1666 1 81555951 81562387 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7304 S 9 1 0 "" NA12156 dgv64e1 1 81599438 81608767 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv18882,esv888,essv21875 M 271 0 0 "" NA06991,NA07029 nsv462361 1 81613026 81659951 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538546 S 1557 0 1 "" 1788485381_A nsv830359 1 81745106 81919321 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447384,nssv1447395,nssv1447407 M 95 3 0 "" nsv520460 1 81786521 81795761 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697434 S 2026 0 1 "" nsv7178 1 81793107 81831893 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4376 S 9 0 0 "" NA12878 nsv160952 1 81797270 81797320 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv179530 M 24 "" nsv506937 1 81940271 81946271 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617533,nssv623272,nssv620658 M 4 3 0 "" CHM,NA15510,NA18994 nsv437590 1 82123895 82126717 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467471 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA10861 nsv437226 1 82123895 82129573 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467107 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19173 nsv526394 1 82289295 82290325 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702693 S 2026 0 1 "" nsv830370 1 82295757 82516365 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447418 S 95 1 0 "" nsv521171 1 82399075 82402027 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694422 S 2026 0 1 "" nsv509357 1 82420467 82444937 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623785 S 4 1 0 "" NA18994 nsv159508 1 82604516 82611507 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178086 M 24 "" nsv520462 1 82613285 82616264 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697435 S 2026 0 1 "" nsv528062 1 82744453 82756832 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704598 S 2026 0 1 "" nsv159537 1 82754666 82754985 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178115 M 24 "" esv2750841 1 82790992 82889600 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6983218,essv6983217,essv6989755,essv6989353 M 771 0 1 "" BEC_557 nsv1677 1 82955251 82986952 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10076 S 9 1 0 "" NA18956 nsv524169 1 83021834 83043139 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700049 S 2026 0 1 "" dgv65e1 1 83040583 83720332 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv3880,essv13524,essv24791,essv14706,essv14544,essv10204,essv6899,essv15760,essv13028,essv15361,essv9795,essv12326,essv9062,esv859,essv16243,essv18979 M 271 0 0 "" NA10860,NA12005,NA18605,NA18859,NA18862,NA18863,NA18994,NA19131,NA19132,NA19138,NA19152,NA19159,NA19160,NA19161,NA19202 nsv830381 1 83112357 83276047 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447495,nssv1447506,nssv1447440,nssv1447451,nssv1447429,nssv1447518,nssv1447529,nssv1447540,nssv1447462,nssv1447484,nssv1447473 M 95 11 0 "" nsv1688 1 83142884 83175453 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10082 S 9 1 0 "" NA18956 nsv1699 1 83197038 83242577 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6719 S 9 0 1 "" NA12156 nsv506938 1 83298329 83304329 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619238,nssv623273 M 4 2 0 "" NA10860,NA18994 nsv462372 1 83309322 83428980 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538551 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00913 essv8077 1 83315378 83656249 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19161 nsv10339 1 83328770 83333576 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15762 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18502 dgv66e1 1 83373387 83720332 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv24568,essv14435,essv16349,essv23337 M 271 0 0 "" NA11992,NA12750,NA19193,NA19201 nsv518391 1 83377140 83428980 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695821 S 2026 0 1 "" nsv1710 1 83392406 83426597 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6728 S 9 0 1 "" NA12156 esv33133 1 83435072 83452424 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98965 S 51 0 1 "" 21938 esv33892 1 83452424 83484603 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100911 S 51 1 0 "" 21656 nsv830392 1 83530508 83701401 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447551 S 95 1 0 "" nsv818256 1 83557735 83569390 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415803,nssv1415802 M 112 2 0 "" NA10860,NA11992 nsv830403 1 83571016 83648391 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447562 S 95 0 1 "" dgv67e1 1 83583971 83650250 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv22248,essv13228 M 271 0 0 "" NA11992,NA19131 nsv508020 1 83725671 83731671 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624214,nssv621471,nssv622292 M 4 0 3 "" NA10860,NA15510,NA18994 nsv506939 1 83805889 83811889 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619239,nssv623274,nssv620659 M 4 3 0 "" NA10860,NA15510,NA18994 nsv506940 1 83857579 83863579 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619240,nssv620660,nssv623275 M 4 3 0 "" NA10860,NA15510,NA18994 nsv1721 1 83900400 83931956 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10089 S 9 1 0 "" NA18956 esv33088 1 83946655 83947787 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93620 S 51 0 1 "" 21972 esv33557 1 83948193 83948869 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98290 S 51 1 0 "" 21772 esv32823 1 83948625 83948869 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93612,essv99588,essv98097 M 51 3 0 "" 21972,22217,22259 nsv523508 1 84022214 84026775 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699279 S 2026 0 1 "" nsv1732 1 84211119 84256656 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9965,nssv1234,nssv10090,nssv2200,nssv6738,nssv5702 M 9 0 6 "" NA12156,NA18507,NA18555,NA18956,NA19129,NA19240 nsv508360 1 84212251 84237018 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618978,nssv622770 M 4 0 2 "" NA10860,NA18994 nsv830414 1 84348759 84536672 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447573 S 95 1 0 "" nsv830426 1 84416945 84568250 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447584 S 95 1 0 "" nsv506941 1 84461372 84467372 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623276 S 4 1 0 "" NA18994 nsv1744 1 84526749 84559211 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6744 S 9 1 0 "" NA12156 nsv830437 1 84549545 84713290 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447606,nssv1447595 M 95 1 1 "" nsv441698 1 84608054 84610002 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv1755 1 84684430 84719736 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1242 S 9 1 0 "" NA19240 nsv516470 1 84951585 84953319 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv690492,nssv668576,nssv686856,nssv704475,nssv658797 M 2026 1 4 "" nsv830448 1 85006115 85203131 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447617,nssv1447629 M 95 0 2 "" nsv462383 1 85046809 85306487 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538558 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01029 nsv521770 1 85250968 85251825 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694537 S 2026 0 1 "" nsv523150 1 85250968 85253185 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698858 S 2026 0 1 "" nsv830459 1 85301606 85498332 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447640 S 95 0 1 "" nsv523891 1 85394282 85394613 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699734 S 2026 0 1 "" nsv830470 1 85532796 85726101 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447651 S 95 0 1 "" nsv1766 1 85590174 85623241 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7335 S 9 1 0 "" NA12156 nsv441699 1 85623312 85627423 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv509369 1 85859254 85895045 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623786 S 4 1 0 "" NA18994 nsv506942 1 85885507 85891507 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620661 S 4 1 0 "" NA15510 nsv462395 1 86091535 86169355 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538568 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01345 nsv522304 1 86097897 86114265 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695085 S 2026 1 0 "" nsv437701 1 86097897 86128364 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467582 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA12753 nsv10350 1 86112582 86116867 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17418,nssv15771,nssv15437,nssv17414,nssv18754,nssv14096 M 31 0 6 Samples from several populations that are part of the HapMap project. "" NA10839,NA18517,NA18563,NA18564,NA18860,NA19007 nsv508371 1 86112845 86142868 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617500 S 4 0 1 "" CHM nsv433165 1 86114265 86116346 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463046 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA18517 nsv437871 1 86114490 86116517 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv471590,nssv471579 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA12753,NA12762 nsv462406 1 86124198 86222017 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538575 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01198 nsv525678 1 86199935 86261519 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701836 S 2026 0 1 "" nsv830481 1 86262295 86449311 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447662 S 95 1 0 "" nsv506943 1 86283213 86289213 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619241 S 4 1 0 "" NA10860 dgv7n21 1 86416212 86419386 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv525420,nsv525653 M 2026 0 2 "" nsv525045 1 86426751 86429895 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701090 S 2026 0 1 "" nsv521366 1 86628788 86634182 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697976 S 2026 0 1 "" nsv1777 1 87015172 87049809 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2994 S 9 1 0 "" NA18555 nsv509380 1 87201568 87238235 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621097 S 4 1 0 "" NA15510 nsv1788 1 87318770 87335425 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10101 S 9 1 0 "" NA18956 nsv437812 1 87345041 87355968 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467693 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA10855 nsv437882 1 87349415 87352079 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv471601,nssv471612 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA10855,NA11831 nsv522243 1 87423913 87432874 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695023 S 2026 0 1 "" nsv517578 1 87432874 87447124 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701135,nssv678000,nssv679264,nssv679722,nssv652421 M 2026 0 5 "" nsv1799 1 87469017 87500335 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10104 S 9 1 0 "" NA18956 nsv518195 1 87604810 87615045 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695619 S 2026 0 1 "" nsv508382 1 87689966 87751687 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618979 S 4 0 1 "" NA10860 nsv1810 1 87767817 87812606 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7341 S 9 0 1 "" NA12156 nsv159009 1 87786830 87793626 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv177587 M 24 "" nsv517179 1 87995031 88014625 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv653937,nssv661396 M 2026 0 2 "" nsv159923 1 87997862 87998015 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178501 M 24 "" nsv437893 1 88029249 88037728 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv471623 S 269 0 1 Samples from several populations that are part of the HapMap project. "" NA10839 nsv522244 1 88195584 88216391 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695024 S 2026 0 1 "" nsv462417 1 88195584 88757359 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538586 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00647 nsv830492 1 88323403 88482235 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447673,nssv1447684 M 95 1 1 "" nsv830503 1 88411228 88588763 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447695 S 95 1 0 "" nsv1821 1 88659841 88695172 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5710,nssv4384,nssv3002 M 9 3 0 "" NA12878,NA18555,NA19129 nsv508021 1 88834941 88840941 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618497,nssv622293,nssv624215 M 4 0 3 "" CHM,NA10860,NA18994 nsv830514 1 88892847 89054534 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447706 S 95 0 1 "" nsv830525 1 88954567 89153351 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447717,nssv1447728 M 95 0 2 "" nsv830537 1 88968088 89118099 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447740 S 95 1 0 "" dgv22n27 1 88969399 89072541 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv462439,nsv462461,nsv462428 M 1557 3 0 "" HGDP00995,HGDP01003,HGDP01010 nsv462450 1 88977269 89018838 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538610 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01047 nsv462472 1 89062762 89149134 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538627 S 1557 0 1 "" 1780862212_A dgv68e1 1 89124089 89272744 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv17801,essv2805,essv17025,essv5514,essv898,essv5558,essv10023,essv15803,essv12245,essv9008,essv20005,essv15263,essv6155,essv3068,essv8170,essv11730,essv16481,essv19389,esv400,essv14320,essv16288,essv13878,essv17166,essv18729,essv18977,essv14717,essv15024,essv24668 M 271 0 0 "" NA07048,NA10831,NA11829,NA11840,NA12005,NA12874,NA18529,NA18532,NA18632,NA18854,NA18981,NA18987,NA19000,NA19094,NA19099,NA19101,NA19129,NA19132,NA19144,NA19154,NA19159,NA19161,NA19171,NA19194,NA19206,NA19210,NA19223 nsv10361 1 89187764 89191067 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16101,nssv14736,nssv16092,nssv14758,nssv17748,nssv13421,nssv14426,nssv15106,nssv13432,nssv15093,nssv19084,nssv13087,nssv14424,nssv17760,nssv12425,nssv17429,nssv15767,nssv14402,nssv12775,nssv14761,nssv14408,nssv17744,nssv20423,nssv14750,nssv13437,nssv16753 M 31 26 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10847,NA10863,NA11830,NA12155,NA12872,NA18502,NA18504,NA18517,NA18552,NA18563,NA18564,NA18853,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19144,NA19173,NA19221,NA19240 esv33356 1 89224872 89232196 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98676 S 51 0 1 "" 21606 nsv526528 1 89259160 89265622 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702841 S 2026 1 0 "" nsv462494 1 89259160 89301577 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538647 S 1557 0 1 "" NINDS_145 nsv523587 1 89263025 89266491 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699377 S 2026 0 1 "" nsv830548 1 89319770 89476301 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447751 S 95 1 0 "" nsv508022 1 89387641 89393641 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622294,nssv621472,nssv618498,nssv624216 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv525030 1 89433883 89438613 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701071 S 2026 0 1 "" nsv159897 1 89473311 89473370 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178475 M 24 "" nsv525147 1 89488254 89491072 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701217 S 2026 0 1 "" nsv830559 1 89713427 89889542 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447762 S 95 1 0 "" nsv508023 1 89800595 89806595 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624217 S 4 0 1 "" NA18994 nsv521773 1 89844603 89855249 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694540 S 2026 0 1 "" nsv1832 1 90067010 90112162 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5725,nssv7352 M 9 0 2 "" NA12156,NA19129 nsv1843 1 90158143 90203035 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7358 S 9 0 1 "" NA12156 nsv528471 1 90185872 90244277 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705074 S 2026 0 1 "" nsv830570 1 90237236 90397547 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447773,nssv1447784 M 95 2 0 "" nsv462506 1 90246069 90268171 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538654 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00984 nsv524317 1 90441765 90548760 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700219 S 2026 1 0 "" nsv521123 1 90482587 90548760 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697801 S 2026 1 0 "" dgv69e1 1 90532013 90695320 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv11089,essv687,essv8860,essv10460,essv1493,essv8452,essv3009,essv9678,essv20080,esv449,essv11978,essv23551,essv21000,essv4179,essv21552,essv5565,essv8747,essv10936,essv4878,essv14605,essv15217,essv4691,essv18419,essv10575,essv24681,essv16105,essv6250,essv18431,essv13766,essv23223,essv6567,essv15784,essv15145,essv21329,essv10143,essv52,essv7592,essv24073,essv15848,essv14885,essv18955,essv585,essv20273,essv1349,essv8618,essv14273,essv12477,essv10212,essv8152,essv16520,essv1949,essv10367,essv4601,essv19257,essv11706,essv5024,essv17282,essv11591,essv6979,essv4730,essv11843,essv23893,essv13034,essv7410,essv24895,essv16351,essv7329,essv15697,essv17119,essv7836,essv5940,essv2080,essv6957,essv24885,essv21702,essv23500,essv12388,essv1627,essv17512,essv20583,essv23134,essv12169,essv16007,essv769,essv2178,essv11019,essv1112,essv3187,essv11937,essv9433,essv24247,essv7195,essv22966,essv20348,essv19754,essv3129,essv24983,essv10348,essv360 M 271 0 0 "" NA06991,NA06993,NA06994,NA07000,NA07029,NA07034,NA07048,NA07056,NA07357,NA10835,NA10838,NA10839,NA10856,NA10859,NA11829,NA11831,NA12005,NA12144,NA12236,NA12248,NA12249,NA12762,NA12814,NA12873,NA12878,NA12891,NA18501,NA18502,NA18506,NA18508,NA18515,NA18516,NA18517,NA18522,NA18524,NA18526,NA18529,NA18545,NA18547,NA18550,NA18558,NA18561,NA18570,NA18576,NA18582,NA18612,NA18620,NA18621,NA18622,NA18623,NA18636,NA18856,NA18859,NA18912,NA18913,NA18942,NA18949,NA18956,NA18959,NA18960,NA18964,NA18969,NA18971,NA18974,NA18975,NA18980,NA18981,NA18991,NA18998,NA19007,NA19092,NA19093,NA19094,NA19100,NA19101,NA19129,NA19130,NA19131,NA19143,NA19152,NA19153,NA19154,NA19171,NA19173,NA19193,NA19194,NA19206,NA19207,NA19208,NA19209,NA19210,NA19211,NA19221,NA19222,NA19223,NA19238,NA19239,NA19240 dgv8n21 1 90815906 90820319 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv526338,nsv520091 M 2026 0 2 "" nsv522034 1 90820002 90823032 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694804 S 2026 0 1 "" nsv506944 1 90850380 90856380 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619242,nssv623277 M 4 2 0 "" NA10860,NA18994 nsv508024 1 90937989 90943989 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621473 S 4 0 1 "" NA15510 nsv159370 1 91148258 91154533 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv177948 M 24 "" nsv506945 1 91243617 91249617 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619243 S 4 1 0 "" NA10860 nsv437904 1 91502897 91513228 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv467742,nssv471634 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA07000,NA07029 nsv519110 1 91506269 91512967 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696586 S 2026 0 1 "" nsv528991 1 91903555 91910183 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705693 S 2026 0 1 "" nsv462517 1 91927746 92310726 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538662 S 1557 1 0 "" 1780862574_A nsv524845 1 91927746 92310726 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700847 S 2026 1 0 "" nsv525320 1 91948069 91950188 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701430 S 2026 0 1 "" nsv519291 1 91952706 91960716 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv655226,nssv689194 M 2026 0 2 "" nsv830581 1 92029228 92223196 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447795 S 95 0 1 "" esv2750842 1 92068802 92291696 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6982715,essv6988574,essv6988573,essv6986250,essv6982716 M 771 1 0 "" BEC_583 nsv1855 1 92222832 92253354 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1257 S 9 1 0 "" NA19240 nsv441700 1 92291265 92296536 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv830592 1 92381303 92517650 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447806,nssv1447817,nssv1447828 M 95 3 0 "" nsv159130 1 92393375 92393426 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv177708 M 24 "" nsv518196 1 92429687 92439161 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695620 S 2026 0 1 "" nsv523354 1 92643284 92776844 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699103 S 2026 1 0 "" nsv830603 1 92715678 92884227 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447839 S 95 0 1 "" nsv159896 1 92879552 92879552 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178474 M 24 "" nsv508393 1 93002534 93056945 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620136 S 4 0 1 "" NA15510 nsv506946 1 93030469 93036469 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619244 S 4 1 0 "" NA10860 nsv830614 1 93177999 93390721 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447851 S 95 0 1 "" nsv508404 1 93259404 93292033 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620137 S 4 0 1 "" NA15510 nsv1866 1 93272951 93304914 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10116 S 9 1 0 "" NA18956 nsv830625 1 93278399 93447267 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447862,nssv1447873 M 95 0 2 "" nsv523951 1 93505872 93507184 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699799 S 2026 1 0 "" nsv1877 1 93959777 94004929 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4403 S 9 0 1 "" NA12878 nsv160444 1 93963489 93963801 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv179022 M 24 "" nsv508415 1 93968143 94017360 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618980 S 4 0 1 "" NA10860 esv33739 1 94000365 94003050 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101590,essv101430,essv98762,essv97476,essv100724,essv94775,essv94359,essv95703,essv95718,essv101663,essv97267,essv98580,essv93261,essv98073,essv100334,essv98493 M 51 9 6 "" 21603,21606,21616,21656,21791,21808,21841,21909,22075,22085,22170,22259,22300,22352 esv33428 1 94016204 94016415 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99503 S 51 0 1 "" 22335 nsv523355 1 94063349 94097612 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699104 S 2026 0 1 "" nsv516137 1 94116259 94216566 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701005,nssv667306,nssv666445 M 2026 0 3 "" nsv523430 1 94294270 94303502 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699185 S 2026 0 1 "" nsv1888 1 94404990 94436977 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10121 S 9 1 0 "" NA18956 nsv506947 1 94411339 94417339 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619245,nssv620663,nssv617534,nssv623278 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv160026 1 94473287 94473287 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178604 M 24 "" nsv506948 1 94580632 94586632 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623279,nssv617535 M 4 2 0 "" CHM,NA18994 nsv1899 1 94712398 94741779 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5731 S 9 1 0 "" NA19129 nsv519997 1 94795857 94825438 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv682195,nssv660008 M 2026 2 0 "" nsv1910 1 94812404 94823893 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7369 S 9 0 1 "" NA12156 dgv70e1 1 94831811 94870624 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv923,essv8544 M 271 0 0 "" NA18503 nsv462528 1 94834539 94854864 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538669 S 1557 0 1 "" NINDS_196 nsv437227 1 94834586 94855569 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467108 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18503 nsv517330 1 94840567 94865283 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv682512,nssv673773,nssv667439,nssv689057,nssv676921,nssv663391,nssv671038,nssv665818,nssv659108,nssv676310,nssv676041,nssv674073,nssv690090,nssv652159,nssv651765,nssv668801,nssv653383,nssv683852,nssv688252,nssv687433,nssv674890,nssv693954,nssv684295,nssv679707,nssv692602,nssv689497,nssv679672,nssv651736,nssv686522,nssv682479,nssv669860 M 2026 0 31 "" nsv442927 1 94842787 94867420 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv818267 1 94843950 94865283 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418359,nssv1418370,nssv1416292 M 112 0 3 "" NA18855,NA19141,NA19142 dgv23n27 1 94843950 94866300 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv462561,nsv462550,nsv462539 M 1557 0 3 "" HGDP00924,HGDP00939,HGDP01031 esv34973 1 94846200 94863834 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6987871,essv6989206 M 771 0 1 "" NA19141 dgv71e1 1 94846203 94870624 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv15969,essv17390,essv8251,essv12006 M 271 0 0 "" NA18855,NA19141,NA19142,NA19153 nsv437915 1 94850105 94865283 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv467786,nssv467775,nssv467808,nssv467764,nssv467753,nssv467797 M 269 0 4 Samples from several populations that are part of the HapMap project. "" NA18503,NA18505,NA19141,NA19142 nsv437229 1 94858585 94865283 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467110 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19142 nsv437228 1 94858585 94876457 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467109 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18503 nsv10372 1 94869219 94871061 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12755,nssv15439,nssv15110,nssv18074,nssv19414,nssv14756,nssv15121,nssv16097 M 31 8 0 Samples from several populations that are part of the HapMap project. "" NA10839,NA10847,NA18517,NA18563,NA18572,NA18853,NA19007,NA19240 nsv506949 1 95010088 95016088 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619246 S 4 1 0 "" NA10860 nsv830636 1 95207870 95415147 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447884,nssv1447895,nssv1447906 M 95 0 3 "" nsv160810 1 95402532 95402850 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv179388 M 24 "" nsv10384 1 95464764 95479270 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18090 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19221 nsv830648 1 95472183 95638285 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447917 S 95 1 0 "" nsv529002 1 95493238 95517023 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705709 S 2026 1 0 "" nsv1921 1 95502828 95532434 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6770 S 9 1 0 "" NA12156 nsv1932 1 95761409 95792413 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10136 S 9 1 0 "" NA18956 nsv528711 1 95800213 95852041 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705361 S 2026 0 1 "" nsv524690 1 95852041 95855454 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700662 S 2026 0 1 "" nsv520561 1 95866366 95866765 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv672546,nssv682567 M 2026 0 2 "" nsv1943 1 95902572 95934783 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10141 S 9 1 0 "" NA18956 esv2422262 1 95973349 96104724 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161551 S 181 1 0 "" ND03704 nsv517226 1 96008447 96017454 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv687390,nssv663535,nssv669918,nssv676841,nssv652160,nssv656771,nssv671039,nssv654067,nssv685283 M 2026 0 9 "" nsv830659 1 96106741 96260941 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447928 S 95 1 0 "" dgv72e1 1 96127772 96258135 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv4921,esv82 M 271 0 0 "" NA18561 nsv159649 1 96195102 96195185 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178227 M 24 "" nsv160662 1 96195221 96195280 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv179240 M 24 "" nsv10395 1 96197849 96200761 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18450 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19221 esv32612 1 96236606 96242934 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv94337,essv100304 M 51 2 0 "" 21808,22300 nsv830670 1 96253201 96437501 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447939 S 95 1 0 "" nsv1954 1 96795143 96840107 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7383 S 9 0 1 "" NA12156 nsv830681 1 96877807 97050085 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447950,nssv1447962 M 95 0 2 "" nsv1966 1 96999862 97044521 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7392 S 9 0 1 "" NA12156 nsv522619 1 97152918 97159204 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv706015 S 2026 0 1 "" nsv1977 1 97162205 97186638 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10147 S 9 1 0 "" NA18956 nsv830692 1 97213513 97337174 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447973,nssv1447984 M 95 1 1 "" nsv1988 1 97470728 97500568 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10150 S 9 1 0 "" NA18956 nsv830703 1 97619729 97813165 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448039,nssv1447995,nssv1448006,nssv1448017,nssv1448028 M 95 2 3 "" nsv519191 1 97657313 97712882 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696674 S 2026 0 1 "" nsv1999 1 97691576 97719841 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10951 S 9 1 0 "" NA15510 nsv160842 1 97703377 97703555 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv179420 M 24 "" nsv830714 1 97737111 97941437 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448050 S 95 1 0 "" nsv528034 1 97750200 97753741 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704566 S 2026 1 0 "" dgv9n21 1 97750200 97762677 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv518604,nsv521057 M 2026 3 0 "" nsv2010 1 97835137 97879447 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2217 S 9 0 1 "" NA18555 nsv830725 1 97969915 98155518 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448061 S 95 0 1 "" nsv462572 1 97995875 98059796 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538705 S 1557 0 1 "" NINDS_199 nsv2021 1 98013668 98047544 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3004 S 9 1 0 "" NA18555 nsv2032 1 98031872 98081306 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9547 S 9 0 1 "" NA18507 nsv830736 1 98200512 98375747 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448073 S 95 1 0 "" nsv525582 1 98304651 98307874 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701721 S 2026 0 1 "" nsv524846 1 98304651 98310473 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700848 S 2026 0 1 "" dgv10n21 1 98304651 98317434 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv523942,nsv524889 M 2026 2 0 "" nsv2043 1 98483718 98518054 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3009 S 9 1 0 "" NA18555 nsv2054 1 98592973 98594117 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4420 S 9 1 0 "" NA12878 nsv830747 1 98695121 98860433 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448084 S 95 0 1 "" nsv830760 1 98908100 99076573 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448095 S 95 1 0 "" nsv2065 1 98930624 98975314 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7398 S 9 0 1 "" NA12156 nsv830771 1 99055542 99227547 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448106 S 95 0 1 "" esv33622 1 99117053 99117596 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99404 S 51 0 1 "" 22335 nsv830782 1 99238706 99393710 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448117,nssv1448128 M 95 0 2 "" nsv462605 1 99242179 99261367 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538725 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00749 nsv2077 1 99252505 99270709 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4429 S 9 1 0 "" NA12878 nsv506950 1 99475080 99481080 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623280,nssv620664 M 4 2 0 "" NA15510,NA18994 nsv2088 1 99503319 99548526 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7408 S 9 0 1 "" NA12156 nsv2099 1 99693177 99710149 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4439 S 9 1 0 "" NA12878 nsv830793 1 99707846 99876660 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448139,nssv1448161,nssv1448185,nssv1448196,nssv1448172,nssv1448150 M 95 0 6 "" nsv2110 1 99739837 99784898 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7417 S 9 0 1 "" NA12156 nsv509391 1 99844121 99885686 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623788 S 4 1 0 "" NA18994 nsv526047 1 99862043 100158067 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702283 S 2026 1 0 "" nsv525046 1 99981012 99987438 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701091 S 2026 0 1 "" nsv523220 1 100050799 100056415 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698942 S 2026 0 1 "" dgv73e1 1 100071676 100210363 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv197,essv19540 M 271 0 0 "" NA12864 nsv10406 1 100153153 100156248 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15440,nssv16431,nssv17759 M 31 3 0 Samples from several populations that are part of the HapMap project. "" NA18853,NA18860,NA19173 nsv830804 1 100214354 100388058 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448207 S 95 1 0 "" nsv2121 1 100292640 100327224 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1276 S 9 1 0 "" NA19240 nsv524345 1 100444876 100456819 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700252 S 2026 0 1 "" nsv522987 1 100444876 100507228 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698657 S 2026 1 0 "" nsv2132 1 100484922 100518857 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7423 S 9 1 0 "" NA12156 nsv525429 1 100493382 100493558 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701555 S 2026 1 0 "" nsv830815 1 100496848 100650339 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448229,nssv1448218 M 95 2 0 "" nsv830826 1 100562348 100777908 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448240 S 95 1 0 "" nsv830837 1 100734329 100893627 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448251 S 95 0 1 "" nsv522064 1 100893363 101251887 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694834 S 2026 1 0 "" nsv522441 1 100984423 100988565 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705799 S 2026 0 1 "" nsv508025 1 101269848 101275848 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624218 S 4 0 1 "" NA18994 dgv11n21 1 101351020 101351669 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv528379,nsv522730 M 2026 0 2 "" nsv526432 1 101584886 101594896 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702735 S 2026 0 1 "" nsv830848 1 101642324 101826241 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448262 S 95 1 0 "" nsv516967 1 101695829 101696953 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv686305,nssv675917,nssv673660,nssv653526 M 2026 0 4 "" nsv10417 1 101719625 101727266 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15430 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA12802 nsv436925 1 101719635 101728664 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv466806 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA12802 nsv520951 1 101721206 101729121 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697705 S 2026 0 1 "" nsv159743 1 101730295 101730381 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178321 M 24 "" nsv527681 1 101813244 101827531 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704157 S 2026 0 1 "" nsv522921 1 101882316 102588413 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698582 S 2026 0 1 "" nsv2143 1 101966200 102000828 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3014 S 9 1 0 "" NA18555 nsv522156 1 102021670 102133735 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694929 S 2026 1 0 "" nsv441701 1 102035642 102038181 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv520768 1 102078161 102147151 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv676040,nssv697559,nssv675139,nssv684634,nssv692106,nssv679574 M 2026 0 6 "" dgv74e1 1 102084360 102129114 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv8990,esv1356 M 271 0 0 "" NA19194 essv16578 1 102107241 102129114 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19193 nsv508026 1 102156744 102162744 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618499 S 4 0 1 "" CHM esv2422183 1 102162757 102508840 CNV Deletion Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161466 S 181 0 1 "" ND04880 nsv2154 1 102271490 102292075 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9970 S 9 1 0 "" NA18507 dgv12n21 1 102291328 102454496 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv527496,nsv528450 M 2026 0 2 "" dgv13n21 1 102359959 102707239 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv527939,nsv527282 M 2026 2 0 "" dgv5e55 1 102367705 102562000 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv2750795,esv2750796 M 771 0 2 "" BEC_705,SPC_178 nsv521500 1 102379409 102507233 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698115 S 2026 1 0 "" dgv24n27 1 102379409 102540351 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv462661,nsv462683 M 1557 0 2 "" 1780862585_A,NINDS_145 nsv462672 1 102382331 102539044 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538769 S 1557 1 0 "" 1782681378_A nsv522781 1 102420538 102423946 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698424 S 2026 0 1 "" nsv830859 1 102517234 102699675 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448273 S 95 0 1 "" nsv524686 1 102528562 102528862 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700658 S 2026 0 1 "" nsv462694 1 102528562 102540696 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538791 S 1557 0 1 "" NINDS_99 dgv6n17 1 102539044 102542646 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv436947,nsv437230,nsv437231,nsv436936 M 60 0 4 "" NA07048,NA10861,NA18506,NA19211 nsv437926 1 102540152 102540844 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv467830,nssv467853,nssv467819,nssv467841 M 269 0 4 Samples from several populations that are part of the HapMap project. "" NA07048,NA07055,NA10861,NA11995 nsv830871 1 102740298 102915198 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448284 S 95 0 1 "" nsv160443 1 102759714 102760043 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv179021 M 24 "" nsv159133 1 102808087 102808405 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv177711 M 24 "" nsv158944 1 102823080 102823146 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv177522 M 24 "" nsv519967 1 102835824 102845930 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694357 S 2026 0 1 "" nsv462716 1 102888613 102971745 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538812 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01347 nsv830882 1 102904704 103067823 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448296 S 95 0 1 "" nsv2165 1 102980488 103011729 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2237 S 9 1 0 "" NA18555 nsv522922 1 103017042 103476661 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698583 S 2026 0 1 "" nsv462739 1 103066159 103114205 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538834 S 1557 0 1 "" NINDS_241 nsv462750 1 103067786 103092149 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538840 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01337 nsv462772 1 103150816 103211917 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538860 S 1557 0 1 "" 1780862310_A dgv25n27 1 103150816 103260518 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv462783,nsv462794 M 1557 0 2 "" HGDP00580,NINDS_160 nsv830893 1 103170519 103347600 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448318,nssv1448307 M 95 0 2 "" nsv506951 1 103210232 103216232 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619247,nssv620665,nssv617536,nssv623281 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv508027 1 103313053 103319053 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618500 S 4 0 1 "" CHM nsv526337 1 103348628 103416287 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702628 S 2026 0 1 "" nsv159319 1 103357637 103367306 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv177897 M 24 "" nsv506952 1 103408713 103414713 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617537 S 4 1 0 "" CHM nsv160700 1 103459410 103462803 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv179278 M 24 "" nsv508426 1 103488245 103628667 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622771 S 4 0 1 "" NA18994 nsv511110 1 103488245 103628667 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621652,nssv622423 M 4 0 0 "" NA10860,NA15510 dgv14n21 1 103628776 103840794 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv527940,nsv527283 M 2026 2 0 "" nsv830904 1 103647652 103819206 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448329 S 95 0 1 "" dgv75e1 1 103702380 103923047 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv11653,essv4083 M 271 0 0 "" NA18635,NA19154 dgv76e1 1 103702380 104049621 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv10314,essv21280,essv14390,essv3235,essv8875,essv1912,essv18211,essv4378,essv9780,essv2578,essv3454,essv18437,essv4817,essv1723,essv24926,essv583,essv855,essv12345,essv23245,essv1009,essv24794,essv5516,essv14565,essv5262,essv331,essv6012,essv15231,essv10016,essv9196,essv7570,essv26,essv8188,essv13729,essv5936,essv14370,essv22953,essv13166,essv20420,essv18075,essv6741,essv15744,essv17620,essv22759,essv17729,essv3148,essv22875,essv15586,essv10791,essv3869,essv5028,essv14641,essv20673,essv21698,essv20771,essv20320,essv9405,essv695,essv6875,essv4255,essv11098,essv24080,essv8923,essv18647,essv7016,essv8624,essv15407,essv5751,essv11566,essv24007,essv6233,essv19679,essv4486,essv8176,essv13045,essv20942,essv19232,essv11220,essv24713,essv13840,essv8451,essv5332,essv22292,essv17764,essv17347,essv20039,essv11429,essv19904,essv8378,essv4643,essv21049,essv12980,essv18411,essv1385,essv15340,essv21181,essv19762,essv11905,essv25015,essv17658,essv18138,essv18342,essv19103,essv19559,essv13634,essv4922,essv6339,essv1268,essv21520,essv2320,essv18774,essv18272,essv14859,essv3809,essv5801,essv10255,essv5204,essv23775,essv3353,essv5129,essv24149,essv3712,essv12557,essv246,essv2049,essv8324,essv6831,essv427,essv2167,essv22630,essv16052,essv14791,essv18985,essv6966,essv16969,essv301,essv7331,essv3520,essv20146,essv9135,essv23612,essv22447,essv19597,essv9614,essv110,essv3101,essv13769,essv22480,essv11864 M 271 0 0 "" NA06985,NA06991,NA06994,NA07019,NA07029,NA07048,NA07055,NA07345,NA07357,NA10830,NA10831,NA10835,NA10838,NA10839,NA10846,NA10847,NA10855,NA10859,NA10860,NA11829,NA11830,NA11831,NA11881,NA11882,NA11993,NA11994,NA12005,NA12006,NA12057,NA12145,NA12146,NA12155,NA12234,NA12236,NA12248,NA12249,NA12264,NA12716,NA12752,NA12753,NA12760,NA12761,NA12763,NA12801,NA12813,NA12864,NA12872,NA12873,NA12874,NA12892,NA18501,NA18502,NA18506,NA18507,NA18508,NA18516,NA18522,NA18523,NA18529,NA18545,NA18550,NA18552,NA18561,NA18562,NA18563,NA18566,NA18570,NA18571,NA18573,NA18576,NA18577,NA18579,NA18582,NA18593,NA18594,NA18603,NA18605,NA18609,NA18611,NA18612,NA18620,NA18624,NA18636,NA18852,NA18854,NA18856,NA18857,NA18858,NA18859,NA18860,NA18862,NA18863,NA18940,NA18943,NA18945,NA18947,NA18948,NA18949,NA18952,NA18960,NA18965,NA18968,NA18969,NA18971,NA18974,NA18975,NA18976,NA18978,NA18990,NA18991,NA18992,NA18994,NA18995,NA18997,NA18998,NA19000,NA19005,NA19007,NA19012,NA19093,NA19094,NA19098,NA19099,NA19102,NA19103,NA19116,NA19119,NA19127,NA19128,NA19131,NA19137,NA19138,NA19141,NA19144,NA19152,NA19153,NA19159,NA19173,NA19194,NA19200,NA19202,NA19203,NA19204,NA19206,NA19208,NA19211,NA19221,NA19239 dgv77e1 1 103702380 104164023 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv3268,essv15808,essv24286,essv24377,essv22122,essv4721,essv6165,essv2814,essv12283,essv12796,essv7288,essv6656,essv7780,esv252,essv4962,essv1597,essv1423,essv1531,essv21415,essv16644,essv2856,essv1128,essv15130,essv17463 M 271 0 0 "" NA10856,NA10857,NA12043,NA12707,NA12717,NA18532,NA18542,NA18592,NA18608,NA18622,NA18637,NA18942,NA18944,NA18953,NA18964,NA18972,NA18980,NA18987,NA19101,NA19120,NA19129,NA19142,NA19223 nsv526367 1 103731652 104041898 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702661 S 2026 1 0 "" nsv830915 1 103736851 104005303 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448418,nssv1448362,nssv1448407,nssv1448340,nssv1448373,nssv1448429,nssv1448384,nssv1448451,nssv1448395,nssv1448440,nssv1448462,nssv1448351 M 95 7 5 "" nsv523177 1 103755206 103840794 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698890 S 2026 1 0 "" dgv78e1 1 103804337 103923047 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2512,essv14171 M 271 0 0 "" NA19003,NA19140 dgv3n64 1 103815078 103840794 CNV Gain Wang_et_al_2007 17921354 SNP_array nsv818278,nsv818289 M 112 6 0 "" NA11881,NA12239,NA19116,NA19120,NA19137,NA19159 nsv10428 1 103815249 104018679 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20753,nssv15766,nssv14097,nssv14411,nssv18434,nssv15776,nssv15758,nssv14422,nssv15114,nssv17413,nssv16757,nssv15096,nssv15444,nssv21413,nssv13085,nssv15423,nssv14754,nssv13765,nssv14738,nssv16418,nssv13745,nssv13415,nssv15760,nssv13762,nssv13747,nssv15116,nssv17087,nssv13767,nssv14081,nssv16427,nssv18780,nssv19744,nssv20734,nssv16095,nssv20074,nssv13435,nssv13105,nssv19094,nssv15428,nssv15446,nssv14092,nssv15118,nssv18764,nssv16088,nssv16761,nssv14732,nssv20404,nssv15436,nssv13417,nssv17083,nssv13751,nssv15092,nssv18089,nssv15451,nssv21083,nssv15098 M 31 19 7 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10847,NA10863,NA11830,NA12155,NA12802,NA12872,NA18504,NA18517,NA18537,NA18552,NA18563,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19144,NA19173,NA19221,NA19240 esv33927 1 103816991 103875754 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101540,essv98741,essv98200,essv94829,essv96994,essv99027,essv93782,essv97239,essv99941,essv93537 M 51 10 0 "" 21603,21606,21772,21791,21817,21938,21972,22075,22086,22128 nsv517215 1 103817656 104054919 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv655273,nssv679391,nssv667356,nssv688568,nssv658161,nssv660447,nssv682585,nssv680609,nssv659396,nssv692505,nssv654029,nssv689783,nssv661436,nssv661358,nssv671100,nssv689055,nssv672123,nssv667390,nssv699575,nssv662118,nssv676244,nssv669783,nssv662162,nssv657469,nssv665921,nssv676029,nssv701551,nssv673576,nssv700627,nssv694004,nssv670430,nssv666199,nssv662552,nssv700146,nssv661787,nssv664445,nssv684662,nssv669653,nssv691321,nssv656427,nssv677517,nssv668444,nssv668374,nssv652851,nssv656532,nssv661247,nssv655140,nssv689642,nssv667055,nssv658586,nssv662179,nssv652155,nssv698380,nssv657883,nssv672517,nssv658618,nssv655958,nssv652881,nssv661265,nssv663350,nssv681934,nssv675863,nssv658115,nssv689696,nssv681455,nssv685020,nssv676498,nssv673940,nssv661892,nssv689302,nssv693420,nssv669736,nssv668749,nssv689741,nssv684879,nssv663227 M 2026 75 1 "" nsv442937 1 103821259 103871405 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv2176 1 103839026 103972504 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9850,nssv10159 M 9 0 2 "" NA18507,NA18956 dgv3n14 1 103843778 104015460 CNV Loss Cooper et al 2008 18776910 SNP_array nsv433186,nsv433187 M 9 0 2 "" NA12156,NA15510 dgv1n31 1 103871301 103922522 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis nsv471326,nsv471475 M 3 "" nsv471345 1 103872020 103880414 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548031,nssv548032,nssv548033 M 3 "" nsv482048 1 103872020 103880414 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558409 S 1 1 0 "" KB1 nsv469513 1 103890015 104005353 CNV Gain Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649659 M 265 181 0 Samples from several populations that are part of the HapMap project. "" nsv471677 1 103890016 104005353 CNV Gain+Loss Sharp et al 2005 15918152 BAC_aCGH,FISH Eichler Segmental Duplication BAC array nssv548756,nssv548768,nssv548740,nssv548733,nssv548751,nssv548730,nssv548731,nssv548744,nssv548771,nssv548749,nssv548753,nssv548766,nssv548754,nssv548735,nssv548767,nssv548770,nssv548747,nssv548761,nssv548750,nssv548729,nssv548762,nssv548743,nssv548759,nssv548746,nssv548732,nssv548739,nssv548737,nssv548738,nssv548760,nssv548765,nssv548769,nssv548745,nssv548728,nssv548741,nssv548734,nssv548742,nssv548757,nssv548755,nssv548764,nssv548763,nssv548752,nssv548727,nssv548758,nssv548736,nssv548748 M 48 3 42 "" JK1051,JK1058,JK1061,JK1688,JK776,NA10469,NA10470,NA10471,NA10472,NA10473,NA10492,NA10493,NA10494,NA10495,NA10496,NA10967,NA10969,NA10970,NA10971,NA10976,NA10979,NA11521,NA11523,NA11776,NA15724,NA15725,NA15728,NA15729,NA15730,NA15731,NA15732,NA15733,NA16688,NA16689,NA17014,NA17015,NA17016,NA17017,NA17051,NA17052,NA17058,NA17059,P86GA nsv511121 1 103899803 103961452 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622424 S 4 0 0 "" NA10860 nsv7179 1 103905699 103924602 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10162 S 9 0 0 "" NA18956 nsv471437 1 103924688 104019040 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548133,nssv548355,nssv548244 M 3 "" nsv508028 1 103935186 103941186 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618501 S 4 0 1 "" CHM nsv509402 1 103989474 103993941 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623789 S 4 1 0 "" NA18994 nsv471346 1 104004461 104013331 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548036,nssv548035,nssv548037 M 3 "" nsv482059 1 104004461 104013331 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558420 S 1 1 0 "" KB1 nsv10439 1 104022431 104030816 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21773,nssv14077,nssv15774,nssv21064,nssv14075,nssv14752 M 31 6 0 Samples from several populations that are part of the HapMap project. "" NA10839,NA10847,NA11830,NA18942,NA18972,NA18975 esv32796 1 104022852 104028091 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98849,essv98207 M 51 2 0 "" 21606,21772 nsv462805 1 104023733 104088187 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538893 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00580 nsv10450 1 104045139 104053643 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16106 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19007 nsv10461 1 104114124 104135080 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14427 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19132 nsv523805 1 104148895 104152271 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699634 S 2026 1 0 "" nsv2188 1 104184597 104205397 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3023,nssv4447,nssv5742 M 9 3 0 "" NA12878,NA18555,NA19129 nsv509413 1 104189127 104227586 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619809,nssv621098,nssv623791 M 4 3 0 "" NA10860,NA15510,NA18994 nsv508029 1 104287352 104293352 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621474,nssv618502 M 4 0 2 "" CHM,NA15510 nsv2199 1 104304860 104317725 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5744 S 9 1 0 "" NA19129 nsv523600 1 104452026 104492788 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699393 S 2026 0 1 "" nsv508030 1 104560279 104566279 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621475 S 4 0 1 "" NA15510 nsv462827 1 104594302 104609869 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538912 S 1557 1 0 "" 1788485590_A nsv462840 1 104602107 104623347 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538923 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00925 nsv528566 1 104656871 104739418 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705185 S 2026 0 1 "" nsv519539 1 104703671 104721658 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696908 S 2026 1 0 "" nsv508437 1 104768830 104791853 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622772 S 4 0 1 "" NA18994 nsv462873 1 104947798 104998775 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538947 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01416 nsv508031 1 104964620 104970620 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618503 S 4 0 1 "" CHM nsv462884 1 105024644 105162042 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538954 S 1557 0 1 "" NINDS_227 nsv525274 1 105033263 105077321 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701375 S 2026 1 0 "" nsv2210 1 105051312 105085256 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1284 S 9 1 0 "" NA19240 nsv830926 1 105064153 105146049 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448473,nssv1448484 M 95 1 1 "" nsv830937 1 105126396 105284365 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448495 S 95 1 0 "" nsv160929 1 105140331 105140660 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv179507 M 24 "" nsv462906 1 105349935 105498411 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538965 S 1557 1 0 "" 1782681378_A nsv2221 1 105403528 105433973 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2246 S 9 1 0 "" NA18555 nsv462917 1 105416072 105529115 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538975 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00279 nsv462928 1 105437220 105497667 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538985 S 1557 0 1 "" NINDS_166 nsv508448 1 105511418 105537605 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622773 S 4 0 1 "" NA18994 dgv26n27 1 105537582 105662337 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv462939,nsv462951 M 1557 0 2 "" NINDS_117,NINDS_125 nsv441703 1 105544878 105552133 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv830948 1 105562263 105725210 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448506,nssv1448518 M 95 2 0 "" nsv818300 1 105666017 105693912 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417811,nssv1417812 M 112 2 0 "" NA18852,NA18853 nsv10472 1 105682701 105707020 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14757 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19132 nsv471688 1 105699553 105869958 CNV Loss Sharp et al 2005 15918152 BAC_aCGH,FISH Eichler Segmental Duplication BAC array nssv550647 S 48 0 1 "" NA17017 nsv2232 1 105716668 105774914 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2257,nssv1293,nssv2256 M 9 0 2 "" NA18555,NA19240 nsv515547 1 105719162 105792628 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv669678,nssv686774,nssv663873 M 2026 3 0 "" nsv10483 1 105727820 105736393 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18449,nssv16425,nssv16422,nssv14095,nssv17091,nssv22103,nssv15426,nssv14741,nssv18078,nssv17743,nssv16096,nssv15781,nssv16104,nssv15112,nssv14407,nssv15770,nssv19424,nssv15117,nssv21394,nssv16436,nssv15769 M 31 0 21 Samples from several populations that are part of the HapMap project. "" NA10839,NA10863,NA11830,NA12872,NA18502,NA18504,NA18517,NA18537,NA18552,NA18564,NA18572,NA18853,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19173,NA19240 esv33680 1 105730865 105733937 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101091,essv94752,essv98450 M 51 0 3 "" 21693,21791,22352 dgv7n17 1 105731186 105739385 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437232,nsv437233,nsv437234 M 60 0 3 "" NA18503,NA19103,NA19211 nsv442944 1 105731226 105734396 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv27n27 1 105737929 105834862 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv462962,nsv462973 M 1557 2 0 "" 1780862081_A,1780862528_A nsv462984 1 105737929 105884509 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv539024 S 1557 1 0 "" 1780862202_A esv2750797 1 105741099 105799001 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6983411,essv6986426,essv6983412 M 771 1 0 "" BEC_651 nsv10495 1 105749151 105762735 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16752,nssv17421 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18502,NA18860 nsv821618 1 105772075 105947415 CNV Gain Sebat_et_al_2004 15273396 ROMA Custom Nimblegen photoprint 85000 probe ROMA oligo array nssv1421407 S 31 1 0 "" dgv28n27 1 105835386 105876885 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv463006,nsv462995,nsv463017,nsv463028 M 1557 0 4 "" HGDP00003,HGDP00738,HGDP00963,HGDP01286 nsv10506 1 105846921 105855250 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14739 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA12740 nsv441704 1 105847383 105848938 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv79e1 1 105856683 105936087 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv12900,esv1001 M 271 0 0 "" NA18522 nsv10517 1 105862373 105864540 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18438,nssv21754,nssv16766 M 31 0 3 Samples from several populations that are part of the HapMap project. "" NA10839,NA18564,NA19007 nsv517498 1 105875399 105910588 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv683793,nssv659568,nssv657290,nssv676098,nssv662180,nssv663113,nssv659184,nssv660815,nssv671457,nssv653352,nssv661483,nssv652191,nssv687918,nssv669737,nssv685345,nssv665031,nssv682444,nssv666639,nssv665963,nssv692107,nssv655378 M 2026 0 21 "" nsv463039 1 105876219 105916488 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv539070 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00780 nsv818311 1 105876885 105910588 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417813 S 112 0 1 "" NA18852 nsv441705 1 105880317 105927046 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv80e1 1 105883462 105936087 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv12958,essv9504,essv9292,essv11376,essv8058 M 271 0 0 "" NA18521,NA18852,NA19102,NA19103,NA19127 nsv830959 1 105931915 106119864 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448540,nssv1448551,nssv1448529 M 95 3 0 "" nsv506953 1 105989874 105995874 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619248 S 4 1 0 "" NA10860 nsv442951 1 106021308 106027130 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv433276 1 106158199 106165360 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463157 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA18956 nsv2243 1 106182726 106200095 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4458 S 9 1 0 "" NA12878 nsv520817 1 106289197 106531840 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv675754,nssv697787,nssv678498,nssv701078,nssv704239 M 2026 1 4 "" dgv81e1 1 106472604 106593624 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv4947,esv583 M 271 0 0 "" NA18637 essv6473 1 106491085 106558195 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18637 nsv10528 1 106523060 106529884 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17082 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18502 nsv159515 1 106686104 106686104 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178093 M 24 "" nsv523065 1 106691078 106696165 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698751 S 2026 0 1 "" nsv830970 1 106771188 106933259 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448562 S 95 0 1 "" nsv521071 1 106804487 106812810 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697768 S 2026 0 1 "" nsv463050 1 106804487 106872020 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv539081 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00025 nsv441706 1 106933760 106935524 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv463062 1 106955304 107025652 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv539093 S 1557 0 1 "" 1782681096_A nsv2254 1 107086342 107117173 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10960 S 9 1 0 "" NA15510 nsv265 1 107086342 107117173 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv265 S 1 1 0 "" NA15510 dgv82e1 1 107195670 107552925 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv728,essv20560 M 271 0 0 "" NA07056 nsv518031 1 107220509 107228250 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694192 S 2026 0 1 "" nsv508032 1 107299529 107305529 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618504 S 4 0 1 "" CHM nsv482070 1 107311451 107313956 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558431 S 1 1 0 "" KB1 nsv830982 1 107363618 107547016 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448573 S 95 1 0 "" essv24194 1 107366027 107421762 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA07056 essv19382 1 107367901 107405777 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA07019 nsv523378 1 107368398 107370904 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699127 S 2026 0 1 "" esv33740 1 107369447 107375452 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101077 S 51 0 1 "" 21693 nsv508033 1 107499763 107505763 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621476 S 4 0 1 "" NA15510 nsv521184 1 107601690 107610648 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv685593,nssv683970 M 2026 0 2 "" nsv830993 1 107696097 107868643 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448584 S 95 1 0 "" nsv463073 1 107873542 107900900 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv539104 S 1557 0 1 "" 1780854103_A nsv463084 1 107884345 107903969 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv539115 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00931 nsv831004 1 107923714 108126919 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448629,nssv1448617,nssv1448595,nssv1448640,nssv1448606,nssv1448651 M 95 6 0 "" nsv523448 1 107958895 107960821 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699205 S 2026 0 1 "" nsv831015 1 107990405 108172070 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448662 S 95 1 0 "" nsv524680 1 108031121 108467476 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700651 S 2026 1 0 "" esv33860 1 108189647 108190624 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100815 S 51 1 0 "" 21656 dgv83e1 1 108330916 108808720 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv8802,essv1831,essv311,essv20423,essv2820,essv22543,essv8111,essv11645,essv23070,essv22076,essv5523,essv1343,essv3113,essv18366,essv22322,essv16553,essv16102,essv19589,essv12355,essv465,essv7172,essv24260,essv11743,essv12836,essv24735,essv12190,essv10015,essv14777,essv16468,essv16960,essv11146,essv3069,essv9610,essv358,essv4697,essv7136,essv13152,essv15283,essv14504,essv10161,essv16636,essv14349,essv6654,essv6874,essv11844,essv13585,essv16829,essv22115,essv849,essv11280,essv23825,essv20997,essv6264,esv322,essv17648,essv9318,essv13861,essv24772,essv10637,essv17328,essv22506,essv23510,essv8245,essv15881,essv19912,essv13438,essv15505,essv23887,essv18594,essv21155,essv21399,essv19166,essv17191,essv15688,essv17701,essv4556,essv9693,essv15029,essv21556,essv10381,essv8320,essv18764,essv1435,essv3721,essv20338,essv22677,essv22840,essv2028,essv1174,essv20618,essv19003,essv20272,essv6613,essv16022,essv22888,essv1944,essv19292,essv16246,essv17586,essv11584,essv3218,essv2643,essv126,essv22189,essv15403,essv23244,essv9181,essv23832,essv21250,essv13519 M 271 0 0 "" NA06985,NA06991,NA07022,NA07029,NA07034,NA07056,NA07348,NA10830,NA10838,NA10855,NA10856,NA10857,NA10860,NA11829,NA11881,NA11882,NA12004,NA12005,NA12044,NA12144,NA12154,NA12234,NA12236,NA12249,NA12740,NA12752,NA12760,NA12762,NA12763,NA12812,NA12813,NA12814,NA12815,NA12864,NA12865,NA12872,NA12873,NA12874,NA18501,NA18504,NA18505,NA18508,NA18524,NA18529,NA18537,NA18547,NA18605,NA18608,NA18621,NA18622,NA18636,NA18853,NA18854,NA18855,NA18856,NA18912,NA18913,NA18944,NA18947,NA18949,NA18951,NA18952,NA18959,NA18967,NA18968,NA18969,NA18971,NA18974,NA18976,NA18978,NA18981,NA18987,NA19000,NA19007,NA19094,NA19099,NA19100,NA19101,NA19102,NA19103,NA19116,NA19120,NA19127,NA19128,NA19129,NA19130,NA19138,NA19139,NA19141,NA19142,NA19144,NA19154,NA19159,NA19160,NA19161,NA19171,NA19173,NA19192,NA19194,NA19202,NA19203,NA19204,NA19205,NA19206,NA19210,NA19211,NA19221,NA19222,NA19223 nsv520953 1 108334004 108337989 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697706 S 2026 0 1 "" nsv517978 1 108394942 108415876 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695390 S 2026 0 1 "" nsv508459 1 108406686 108464991 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622774 S 4 0 1 "" NA18994 dgv84e1 1 108410668 108699273 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv14621,essv10729 M 271 0 0 "" NA18523,NA19093 esv32800 1 108416277 108416372 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100668,essv100027 M 51 0 2 "" 21656,22086 nsv2265 1 108424591 108452296 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2265,nssv6789 M 9 0 2 "" NA12156,NA18555 esv33273 1 108426662 108436278 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98173,essv94750,essv94036,essv97354,essv93436,essv93255,essv94921,essv92579,essv96323 M 51 9 0 "" 21772,21791,21802,21879,22128,22170,22231,22233,22371 nsv526757 1 108436560 108601319 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703107 S 2026 0 1 "" esv32547 1 108443805 108449225 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101476,essv101131,essv100665,essv101060,essv95177,essv98288,essv94020,essv101361,essv97023,essv95465,essv95279,essv101775,essv95794,essv94547,essv99020,essv92730,essv96104,essv96687,essv98526,essv99790,essv96049,essv93458,essv93381,essv94909,essv92614,essv98049,essv96503,essv99330,essv97784,essv99485,essv94199 M 51 31 0 "" 21603,21618,21656,21693,21721,21772,21802,21805,21817,21847,21872,21909,21911,21932,21938,21944,22007,22011,22085,22086,22127,22128,22170,22231,22233,22259,22261,22275,22278,22335,22394 nsv10539 1 108443817 108449876 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17751,nssv17096,nssv19754,nssv19110,nssv17417,nssv16099,nssv17412,nssv16100,nssv15099,nssv18779,nssv15448,nssv15101,nssv16090,nssv14425,nssv22084,nssv15447,nssv18073,nssv16111 M 31 17 1 Samples from several populations that are part of the HapMap project. "" NA10839,NA12740,NA12802,NA12872,NA18502,NA18504,NA18517,NA18563,NA18572,NA18853,NA18860,NA18980,NA19007,NA19132,NA19144,NA19173,NA19221,NA19240 nsv433387 1 108445533 108449154 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463268 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA18555 nsv442958 1 108446277 108449538 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv10550 1 108484660 108485538 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14737,nssv18081 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA11830,NA18860 nsv10561 1 108501157 108513188 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17742 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18502 dgv85e1 1 108504425 108808720 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv7803,essv19434 M 271 0 0 "" NA11840,NA18558 nsv10572 1 108514864 108565327 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16441,nssv15442,nssv22433,nssv16755,nssv18768,nssv14405,nssv15422,nssv15431,nssv19109,nssv16420,nssv19440,nssv15756,nssv15778,nssv18433,nssv16430,nssv17426,nssv16434,nssv22414,nssv15429,nssv20084,nssv15097,nssv15752 M 31 21 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA10839,NA10847,NA10863,NA11830,NA12740,NA12802,NA12872,NA18504,NA18517,NA18537,NA18564,NA18853,NA18942,NA18972,NA18975,NA19007,NA19144,NA19173,NA19221,NA19240 nsv7180 1 108529879 108638761 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6796 S 9 0 0 "" NA12156 nsv510903 1 108547112 108656594 OTHER Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621653,nssv624360 M 4 0 0 "" NA15510,NA18994 nsv463095 1 108566208 108601319 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv539126 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00116 nsv2276 1 108592086 108723196 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10182,nssv5761 M 9 0 2 "" NA18956,NA19129 nsv10583 1 108637480 108688842 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19439,nssv15761,nssv14735,nssv16760,nssv15772,nssv15759,nssv20414,nssv19770,nssv16750,nssv16412,nssv18763,nssv15427,nssv16764,nssv17756,nssv16771,nssv17085,nssv19098,nssv16086,nssv16082,nssv16108,nssv22761,nssv22742 M 31 21 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA10839,NA10847,NA10863,NA11830,NA12740,NA12802,NA12872,NA18504,NA18517,NA18537,NA18564,NA18853,NA18942,NA18972,NA18975,NA19007,NA19144,NA19173,NA19221,NA19240 nsv441707 1 108640502 108698239 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv10594 1 108689968 108702756 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18072 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18502 nsv10606 1 108718131 108719010 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15757,nssv18441 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA11830,NA18860 nsv2287 1 109052741 109095285 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2274 S 9 0 1 "" NA18555 nsv463106 1 109068404 109083916 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv539136 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01275 nsv526819 1 109078328 109089325 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703173 S 2026 0 1 "" nsv521427 1 109078596 109083916 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698036 S 2026 0 1 "" nsv463117 1 109079986 109083916 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv539147 S 1557 0 1 "" 1780854202_A nsv818322 1 109079986 109083916 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417609 S 112 0 1 "" NA18978 nsv517381 1 109079986 109098508 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv706005,nssv675068,nssv668838,nssv677315,nssv668325,nssv687426,nssv654981,nssv655959,nssv654880,nssv685328,nssv659552,nssv684418,nssv667589,nssv680529,nssv680313,nssv669266,nssv699178,nssv688606,nssv686059,nssv654796,nssv677839,nssv677956,nssv692506,nssv693128,nssv691765,nssv651861,nssv678932 M 2026 0 27 "" dgv15n21 1 109128267 109195809 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv527447,nsv517523 M 2026 6 0 "" nsv831026 1 109179375 109374278 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448673,nssv1448684,nssv1448695 M 95 0 3 "" nsv526049 1 109185096 109196017 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702286 S 2026 0 1 "" nsv437236 1 109207917 109231603 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467117 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18860 nsv441708 1 109208896 109210187 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" esv32817 1 109280679 109290701 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101572,essv98912,essv100900,essv96826,essv101016,essv94761,essv94136,essv101340,essv94341,essv97854,essv94640,essv92985,essv96225,essv96618,essv98648,essv99755,essv93428,essv93353,essv92654,essv97644,essv100203,essv96309 M 51 0 22 "" 21603,21606,21656,21659,21693,21791,21802,21805,21808,21837,21932,21939,22007,22011,22085,22086,22128,22170,22233,22278,22286,22371 nsv159041 1 109309770 109310100 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv177619 M 24 "" nsv463128 1 109397315 109432427 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv539158 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00899 esv2750798 1 109401356 109467000 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6989844,essv6983714,essv6983715,essv6983716 M 771 0 1 "" BEC_617 nsv520456 1 109439464 109451113 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697432 S 2026 0 1 "" nsv517354 1 109494079 109538178 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv692955,nssv651803,nssv704995,nssv680952,nssv682218,nssv700364,nssv688318,nssv674153,nssv704812 M 2026 0 9 "" nsv506954 1 109772832 109778832 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623282 S 4 1 0 "" NA18994 nsv510951 1 109863938 109947502 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618666 S 4 0 0 "" CHM nsv2299 1 109864960 109917005 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5763,nssv10184,nssv7442,nssv2298,nssv4469 M 9 0 5 "" NA12156,NA12878,NA18555,NA18956,NA19129 nsv160749 1 109899260 109903491 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv179327 M 24 "" esv33954 1 109899291 109900546 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101593,essv101137,essv94116,essv101387,essv95380,essv101696,essv94515,essv99037,essv93672,essv96112,essv97092,essv95979,essv99641,essv94891,essv92650,essv98000,essv99276,essv97659,essv100193 M 51 8 11 "" 21603,21618,21802,21805,21872,21909,21932,21938,21972,22007,22075,22127,22217,22231,22233,22259,22275,22278,22286 nsv482081 1 109922686 109938660 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558442 S 1 1 0 "" KB1 nsv2310 1 109928961 109972700 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6805,nssv5773,nssv9560,nssv10189,nssv10968,nssv4479,nssv2307 M 9 0 7 "" NA12156,NA12878,NA15510,NA18507,NA18555,NA18956,NA19129 nsv508471 1 109929043 109947502 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620139,nssv618981 M 4 0 2 "" NA10860,NA15510 nsv10617 1 109929322 109969753 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16102,nssv20099,nssv18771,nssv17090,nssv17094,nssv16426,nssv17415,nssv16432,nssv16083,nssv19769,nssv23389,nssv16742,nssv17745,nssv18432,nssv21074,nssv17072,nssv14755,nssv23079,nssv16429,nssv15753,nssv17410,nssv20744,nssv15095,nssv17747,nssv17740,nssv16438,nssv17080,nssv23699,nssv15777,nssv17101,nssv17402,nssv20100 M 31 21 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10847,NA12802,NA18502,NA18517,NA18537,NA18552,NA18563,NA18572,NA18853,NA18860,NA18942,NA18972,NA18975,NA18980,NA19132,NA19144,NA19173,NA19221,NA19240 nsv2321 1 109933817 109941498 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1309 S 9 1 0 "" NA19240 nsv276 1 109936039 109964923 CNV Loss Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv276 S 1 0 1 "" NA15510 nsv442967 1 109936426 109954995 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv437937 1 109940624 109947574 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv467864,nssv467875 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA12043,NA12264 nsv482092 1 109942460 109948408 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558453 S 1 1 0 "" KB1 esv33243 1 109943568 109951976 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98783,essv97498,essv101252,essv93853,essv98284,essv94810,essv94466,essv95667,essv97395,essv94557,essv99101,essv92895,essv93715,essv96696,essv92566,essv96522,essv100472,essv99537 M 51 18 0 "" 21606,21616,21618,21634,21772,21791,21808,21841,21879,21932,21938,21939,21972,22011,22233,22261,22298,22335 nsv2332 1 109946309 109969525 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1317 S 9 1 0 "" NA19240 nsv522988 1 110019482 110022408 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698658 S 2026 1 0 "" esv33961 1 110060736 110061508 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93391 S 51 1 0 "" 22170 nsv2343 1 110344280 110380004 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5774,nssv4489,nssv3043 M 9 3 0 "" NA12878,NA18555,NA19129 nsv509424 1 110358736 110389533 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619811,nssv621099 M 4 2 0 "" NA10860,NA15510 nsv2354 1 110403445 110435141 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4499 S 9 1 0 "" NA12878 nsv2365 1 110422798 110431686 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6809 S 9 0 1 "" NA12156 esv33312 1 110666882 110670183 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98930 S 51 0 1 "" 21606 nsv519826 1 110741610 110748759 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv662944,nssv658959 M 2026 0 2 "" nsv524174 1 110747216 110750882 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700055 S 2026 0 1 "" nsv522839 1 110867320 110873052 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698491 S 2026 1 0 "" nsv520458 1 110883420 110898826 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697433 S 2026 0 1 "" nsv2376 1 110988031 111001156 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6819 S 9 0 1 "" NA12156 nsv517897 1 111007716 111019963 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695306 S 2026 1 0 "" nsv831037 1 111025120 111165920 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448706 S 95 1 0 "" nsv517082 1 111053199 111099765 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv663874,nssv670794,nssv680029,nssv701118,nssv661484,nssv661130,nssv683037,nssv680869,nssv652646,nssv659517,nssv673134,nssv689997,nssv662372,nssv685787,nssv680182,nssv684988,nssv684087,nssv660366,nssv656767,nssv657151,nssv674450,nssv655875,nssv652041,nssv684124,nssv658924,nssv673328,nssv655053,nssv675397,nssv675715,nssv653810,nssv672559,nssv662181,nssv682161,nssv669991,nssv668892,nssv683550,nssv690543,nssv682012,nssv691932,nssv657972,nssv676535,nssv677888,nssv657406,nssv688806,nssv652852,nssv661553,nssv651734,nssv677166,nssv667611,nssv679263,nssv677049,nssv686152,nssv666710,nssv690594,nssv693157,nssv671864,nssv661437,nssv665352,nssv671485,nssv676916,nssv653759,nssv663597,nssv678960,nssv669952,nssv684898,nssv676974,nssv660616,nssv669084,nssv657015,nssv659461,nssv669208,nssv658006,nssv688819,nssv678386,nssv665831,nssv672411,nssv676135,nssv663457,nssv658200,nssv691006,nssv691096,nssv659322,nssv657335,nssv658116,nssv660532,nssv688099,nssv675534,nssv688628,nssv692507,nssv688490,nssv670525,nssv687340,nssv656225,nssv682619,nssv652359,nssv705563,nssv690382,nssv669488,nssv663435,nssv685083,nssv690429,nssv687625,nssv684074,nssv668839,nssv681365,nssv663114,nssv688319,nssv663019,nssv659814,nssv664516,nssv666607,nssv659586,nssv656298,nssv690491,nssv679819,nssv678027,nssv686345,nssv684777,nssv668523,nssv688302,nssv677998,nssv676167,nssv658402,nssv659236,nssv671738,nssv658960,nssv691361,nssv665832,nssv665721,nssv652389,nssv680899,nssv692305,nssv690669,nssv678159,nssv670219,nssv665790,nssv668036,nssv685833,nssv685935,nssv660264,nssv693561,nssv682688,nssv675662,nssv654031,nssv684384,nssv687950,nssv658909,nssv673105,nssv669896,nssv681709,nssv651924,nssv685594,nssv668653,nssv681546,nssv674503,nssv691595,nssv658242,nssv655379,nssv664346,nssv692640 M 2026 12 148 "" nsv508482 1 111064209 111109614 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618982,nssv620140 M 4 0 2 "" NA10860,NA15510 nsv437237 1 111068883 111095017 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467118 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18854 nsv436958 1 111071844 111105755 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv466839 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA10860 nsv436969 1 111071844 111124954 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv466850 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA10835 nsv2387 1 111080910 111106611 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9566,nssv1328,nssv9324 M 9 0 3 "" NA18507,NA18517,NA19240 nsv818334 1 111086869 111099765 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418130,nssv1418131 M 112 0 2 "" NA19143,NA19145 nsv437238 1 111087148 111105755 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467119 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18857 nsv10628 1 111088288 111101310 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16413,nssv18070,nssv16748,nssv21404,nssv17431,nssv16416 M 31 0 6 Samples from several populations that are part of the HapMap project. "" NA07048,NA10863,NA12155,NA12802,NA18517,NA19240 nsv442974 1 111089607 111100268 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv437948 1 111091020 111095105 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv467952,nssv467964,nssv467986,nssv467941,nssv467975,nssv467908,nssv467919,nssv467897,nssv467930,nssv467886 M 269 0 10 Samples from several populations that are part of the HapMap project. "" NA10835,NA10859,NA10860,NA11882,NA11992,NA12249,NA12264,NA12801,NA12812,NA12814 dgv29n27 1 111091020 111099765 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv463161,nsv463184,nsv463206,nsv463173,nsv463195,nsv463217,nsv463150,nsv463228,nsv463139 M 1557 0 9 "" 1780854545_A,1780862075_A,1780862111_A,1798860552_A,HGDP00467,HGDP00640,HGDP00647,HGDP00869,HGDP01268 nsv818345 1 111091020 111099765 CNV Gain+Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416625,nssv1417814,nssv1416671,nssv1417962,nssv1415608,nssv1416021,nssv1416821,nssv1418392,nssv1415609,nssv1418403,nssv1416022,nssv1417816,nssv1416903,nssv1417770,nssv1417963,nssv1417964,nssv1416624,nssv1415733,nssv1415734,nssv1416822,nssv1416023,nssv1418381 M 112 3 19 "" NA06991,NA06993,NA07345,NA07348,NA07357,NA10835,NA12249,NA12801,NA12812,NA12813,NA12874,NA12875,NA18852,NA18854,NA19116,NA19120,NA19137,NA19140,NA19141,NA19142,NA19239,NA19240 nsv522939 1 111133469 111138091 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698602 S 2026 0 1 "" nsv2398 1 111158073 111192272 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4509 S 9 1 0 "" NA12878 nsv463239 1 111171336 111197249 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv539262 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00003 nsv523488 1 111178095 111178644 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699255 S 2026 0 1 "" nsv528444 1 111187795 111187883 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705039 S 2026 0 1 "" nsv508493 1 111307006 111355651 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617520 S 4 0 1 "" CHM nsv10639 1 111380891 111499095 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16756 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18552 nsv463250 1 111449958 111774254 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv539273 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01268 dgv86e1 1 111499437 111506775 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv922,essv6105 M 271 0 0 "" NA18573 dgv87e1 1 111535893 111547026 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv5692,esv1167,essv512 M 271 0 0 "" NA18550,NA18952 nsv441709 1 111540368 111547536 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" essv5780 1 111540506 111547026 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18540 nsv818356 1 111541537 111544333 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417423,nssv1417174 M 112 0 2 "" NA18550,NA18952 nsv518232 1 111558845 111596055 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695661 S 2026 0 1 "" nsv525163 1 111587244 111587570 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701237 S 2026 0 1 "" nsv523975 1 111587244 111597502 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699830 S 2026 0 1 "" nsv508504 1 111620082 111663732 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618983 S 4 0 1 "" NA10860 nsv523120 1 111639206 111646346 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698820 S 2026 0 1 "" nsv441710 1 111641179 111645269 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv516329 1 111642958 111646346 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv656465,nssv671993,nssv683722,nssv677602,nssv652776,nssv653712,nssv664466,nssv668712,nssv687080,nssv693306,nssv663615,nssv674042,nssv659651,nssv681590 M 2026 0 14 "" nsv818367 1 111642958 111646346 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415805,nssv1415804 M 112 0 2 "" NA10860,NA11993 nsv517961 1 111646346 111648424 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695374 S 2026 0 1 "" nsv2410 1 111741592 111764914 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9568 S 9 1 0 "" NA18507 nsv2421 1 111775816 111821951 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6829 S 9 0 1 "" NA12156 nsv2432 1 112043784 112068759 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1338 S 9 1 0 "" NA19240 nsv463261 1 112145708 112164067 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv539284 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00094 nsv831048 1 112171739 112392321 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448717 S 95 1 0 "" nsv528707 1 112173679 112175483 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705354 S 2026 0 1 "" nsv463272 1 112235137 112268939 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv539295 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00814 nsv831059 1 112281104 112436767 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448728 S 95 1 0 "" nsv831070 1 112306700 112504581 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448751,nssv1448762,nssv1448740 M 95 3 0 "" nsv508515 1 112369582 112444923 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618984,nssv620141 M 4 0 2 "" NA10860,NA15510 nsv2443 1 112397961 112426840 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10981,nssv10201 M 9 0 2 "" NA15510,NA18956 nsv287 1 112402144 112423342 CNV Loss Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv287 S 1 0 1 "" NA15510 dgv8n17 1 112402585 112419908 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv436991,nsv436980 M 60 0 2 "" NA07019,NA12707 nsv10650 1 112405415 112416960 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19101,nssv19428,nssv16089,nssv16746,nssv18077,nssv17420,nssv19093,nssv17761,nssv21764,nssv20429,nssv16743,nssv16087,nssv17424,nssv16091,nssv18762,nssv15115,nssv16107,nssv20430,nssv16768,nssv17732 M 31 20 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10863,NA11830,NA12740,NA12872,NA18502,NA18504,NA18517,NA18563,NA18564,NA18853,NA18860,NA18975,NA18980,NA19132,NA19144,NA19173,NA19221,NA19240 dgv88e1 1 112407136 112422566 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2956,essv2403,essv2149,essv18573,essv22016,essv6505,essv3506,essv20683,essv6550,esv1409,essv23292 M 271 0 0 "" NA10851,NA12006,NA12802,NA12815,NA18572,NA18624,NA18972,NA18976,NA18978,NA18999 nsv442981 1 112407719 112409432 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv528561 1 112473681 112475135 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705177 S 2026 0 1 "" nsv2454 1 112525891 112570301 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2317,nssv6838 M 9 0 2 "" NA12156,NA18555 nsv508526 1 112551438 112627257 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617345 S 4 0 1 "" CHM nsv831081 1 112646962 112834682 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448773 S 95 0 1 "" nsv159431 1 112704037 112704037 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178009 M 24 "" nsv159278 1 112704052 112706999 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv177856 M 24 "" nsv506955 1 112715191 112721191 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623283,nssv617538,nssv620666 M 4 3 0 "" CHM,NA15510,NA18994 essv21692 1 112869177 113231408 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12248 nsv159055 1 112882291 112882614 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv177633 M 24 "" nsv818378 1 112975753 113146860 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415610 S 112 1 0 "" NA12248 essv18807 1 112988198 113162419 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12248 nsv526064 1 113009809 113013699 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702304 S 2026 0 1 "" nsv522967 1 113096057 113113032 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698637 S 2026 0 1 "" nsv509435 1 113234120 113302385 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621100 S 4 1 0 "" NA15510 nsv508537 1 113302385 113347845 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617355 S 4 0 1 "" CHM nsv437002 1 113304630 113370929 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv466883 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA07348 nsv160886 1 113323382 113325836 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv179464 M 24 "" nsv2465 1 113443631 113488647 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7464 S 9 0 1 "" NA12156 nsv520749 1 113484775 113493400 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694399 S 2026 0 1 "" nsv508548 1 113749605 113759869 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618985 S 4 0 1 "" NA10860 nsv437013 1 113777997 113841134 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv466894 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA12707 nsv831093 1 113966209 114090277 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448784 S 95 0 1 "" nsv523196 1 114201731 114202015 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698912 S 2026 0 1 "" nsv463284 1 114297632 114335909 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv539306 S 1557 0 1 "" 1780862015_A nsv528503 1 114361289 114365717 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705108 S 2026 0 1 "" nsv2476 1 114363464 114396077 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1349 S 9 1 0 "" NA19240 nsv517962 1 114388433 114390039 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695375 S 2026 0 1 "" nsv2487 1 114445950 114490584 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2326 S 9 0 1 "" NA18555 dgv9n17 1 114515567 114549063 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437024,nsv437036 M 60 0 2 "" NA10857,NA12752 nsv437959 1 114519601 114520673 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv468019,nssv468008,nssv467997,nssv468030 M 269 0 4 Samples from several populations that are part of the HapMap project. "" NA10857,NA12044,NA12752,NA12760 nsv831104 1 114710165 114881898 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448795 S 95 0 1 "" nsv2498 1 114889694 114923217 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1358 S 9 1 0 "" NA19240 nsv524392 1 115119915 115172111 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700309 S 2026 1 0 "" nsv528883 1 115131063 115303040 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705564 S 2026 0 1 "" nsv463295 1 115284407 115321245 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv539317 S 1557 0 1 "" 1780854464_A essv18166 1 115353371 115992862 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12057 essv21938 1 115433285 115819379 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12057 esv34370 1 115435737 115880000 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6986672,essv6978649,essv6978648,essv6978647,essv6990265 M 771 1 0 "" NA12057 nsv818389 1 115439990 115781081 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416214 S 112 1 0 "" NA12057 nsv159371 1 115591969 115596540 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv177949 M 24 "" nsv523503 1 115610377 115619051 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699274 S 2026 0 1 "" nsv2509 1 115912307 115948066 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4520 S 9 0 1 "" NA12878 nsv831115 1 115915913 116106361 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448806 S 95 1 0 "" nsv524619 1 115945452 115996986 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700580 S 2026 1 0 "" nsv508559 1 116014983 116091933 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618986 S 4 0 1 "" NA10860 nsv2522 1 116254646 116275005 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5797 S 9 1 0 "" NA19129 nsv528884 1 116291058 116357799 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705565 S 2026 0 1 "" nsv831126 1 116318245 116486425 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448817 S 95 1 0 "" nsv831137 1 116421667 116573461 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448828 S 95 1 0 "" nsv2533 1 116622439 116657194 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4529 S 9 1 0 "" NA12878 nsv2544 1 116679568 116711050 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9577,nssv7471 M 9 2 0 "" NA12156,NA18507 nsv482103 1 116829073 116922356 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558464 S 1 1 0 "" KB1 nsv831148 1 116838346 117038553 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448928,nssv1448906,nssv1448839,nssv1448851,nssv1448939,nssv1448950,nssv1448884,nssv1448917,nssv1448862,nssv1448873,nssv1448895 M 95 11 0 "" nsv10661 1 116869172 116916192 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16437,nssv23060,nssv18075,nssv24000,nssv17073,nssv22094,nssv19431,nssv16759,nssv17076,nssv16421,nssv17078 M 31 7 4 Samples from several populations that are part of the HapMap project. "" NA07048,NA10839,NA10863,NA12155,NA12872,NA18517,NA18537,NA18572,NA18860,NA18972,NA19132 dgv89e1 1 116876957 116986717 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv12549,essv21255,essv8876,essv11977,essv7159,essv13619,essv23226,essv14578,essv3795,essv7566,essv22642,essv7094,essv17555,essv5908,essv8620,essv11227,essv15089,essv8160,essv20155,essv1902,essv24430,essv15717,essv9067,essv6905,essv18842,essv3370,essv4070,essv14164,esv303,essv23053,essv17285,essv20091,essv19965,essv8372,essv9125,essv19584,essv10875,essv19083,essv25001,essv16780,essv17727,essv12211,essv16235,essv18715,essv4154,essv22381,essv22960,essv22443,essv16830,essv14693,essv17761,essv2216,essv23528,essv22323,essv24858,essv19397,essv10296 M 271 0 0 "" NA06985,NA06993,NA07000,NA07029,NA07048,NA07055,NA07357,NA10831,NA10839,NA10855,NA11832,NA11840,NA12707,NA12751,NA12752,NA12761,NA12762,NA12812,NA12813,NA12864,NA12872,NA12874,NA12875,NA18506,NA18508,NA18517,NA18537,NA18545,NA18547,NA18550,NA18555,NA18605,NA18635,NA18856,NA18858,NA18860,NA18871,NA18872,NA18943,NA18945,NA18960,NA18976,NA19098,NA19101,NA19127,NA19129,NA19131,NA19132,NA19140,NA19159,NA19161,NA19202,NA19204,NA19205,NA19206,NA19239 esv33190 1 116880938 116915594 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100948,essv94325,essv95367,essv96164,essv93479,essv99589,essv94250 M 51 6 1 "" 21693,21808,21872,22007,22128,22217,22394 esv32882 1 116918719 116919104 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100881 S 51 1 0 "" 21656 nsv2555 1 116982175 117013482 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10985 S 9 1 0 "" NA15510 nsv831159 1 117099369 117295654 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448962,nssv1448973 M 95 0 2 "" nsv2566 1 117126088 117171196 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7478 S 9 0 1 "" NA12156 nsv519074 1 117175757 117177946 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696546 S 2026 0 1 "" nsv517575 1 117256373 117256744 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv672610,nssv690363,nssv652415 M 2026 0 3 "" nsv518833 1 117309943 117314119 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694278 S 2026 0 1 "" nsv2577 1 117487947 117520505 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5807 S 9 1 0 "" NA19129 nsv521455 1 117544214 117556293 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698066 S 2026 1 0 "" nsv831170 1 117691472 117862096 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448984 S 95 1 0 "" nsv519780 1 117691874 117741643 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv660982,nssv658550 M 2026 2 0 "" nsv506956 1 117724214 117730214 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617539,nssv623284,nssv619249 M 4 3 0 "" CHM,NA10860,NA18994 nsv518885 1 117830678 117833676 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696344 S 2026 0 1 "" nsv526227 1 117989565 117995932 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702493 S 2026 1 0 "" nsv528470 1 118133151 118211096 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705073 S 2026 0 1 "" nsv523041 1 118581975 118590698 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698724 S 2026 0 1 "" nsv2588 1 118632000 118637505 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3053 S 9 1 0 "" NA18555 nsv509446 1 118641496 118648571 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623792,nssv619812,nssv621101 M 4 3 0 "" NA10860,NA15510,NA18994 nsv525369 1 118699930 118705003 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701489 S 2026 0 1 "" nsv506957 1 118836963 118842963 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617540 S 4 1 0 "" CHM esv2750799 1 118941299 119094269 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6981003,essv6981001,essv6981002 M 771 1 0 "" BEC_336 nsv519487 1 119002036 119003424 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696878 S 2026 1 0 "" nsv831181 1 119052217 119241389 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448995 S 95 1 0 "" nsv528214 1 119092970 119095860 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704775 S 2026 1 0 "" nsv524681 1 119145560 120923841 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700652 S 2026 1 0 "" nsv160473 1 119148128 119148207 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv179051 M 24 "" nsv506958 1 119148239 119154239 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619250 S 4 1 0 "" NA10860 dgv16n21 1 119293942 119301385 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv517843,nsv517011 M 2026 0 3 "" nsv521813 1 119301385 119331490 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694585 S 2026 0 1 "" nsv831192 1 119383214 119555268 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449006 S 95 1 0 "" nsv159961 1 119519398 119519453 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178539 M 24 "" nsv2599 1 119647065 119679790 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4648 S 9 0 1 "" NA19129 dgv90e1 1 119728738 119926619 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv755,essv5235,essv6886,essv16001 M 271 0 0 "" NA18501,NA18605,NA18624 nsv524727 1 119736013 119768443 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700715 S 2026 0 1 "" nsv520283 1 119803476 119839032 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694079 S 2026 1 0 "" nsv818400 1 119803476 119839032 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417674 S 112 1 0 "" NA18994 dgv91e1 1 119810703 119869808 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv6559,essv182 M 271 0 0 "" NA18624,NA18994 nsv463306 1 119819525 119851704 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv539328 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00929 nsv463317 1 119819644 119874829 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv539339 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00454 dgv92e1 1 119822116 119874484 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv5684,essv5768,essv9585,essv13333 M 271 0 0 "" NA18500,NA18501,NA18540,NA18605 nsv515644 1 119822146 119866645 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv664227,nssv686754,nssv674581,nssv659972,nssv660320,nssv669315,nssv658403,nssv687510,nssv657486,nssv665922,nssv659153,nssv665214,nssv656958,nssv702176 M 2026 1 13 "" nsv441711 1 119826919 119861557 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv30n27 1 119827426 119857925 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv463328,nsv463339 M 1557 2 0 "" HGDP01238,HGDP01361 nsv437239 1 119827765 119845365 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467120 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18500 nsv437971 1 119835464 119839539 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv468052,nssv468041 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA18500,NA18501 nsv508034 1 119871480 119877480 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621477,nssv618505 M 4 0 2 "" CHM,NA15510 nsv831204 1 119978491 120026133 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449050,nssv1449017,nssv1449039,nssv1449028 M 95 3 1 "" nsv831215 1 119978491 120160511 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449117,nssv1449128,nssv1449161,nssv1449139,nssv1449084,nssv1449106,nssv1449150,nssv1449073,nssv1449172,nssv1449095,nssv1449184,nssv1449195,nssv1449061,nssv1449206 M 95 14 0 "" dgv93e1 1 119979355 120409198 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2571,essv11724,essv826,essv11245,essv3418,essv7399,essv1406 M 271 0 0 "" NA18623,NA18945,NA18973,NA18990,NA19007,NA19154,NA19204 dgv94e1 1 119979355 120958392 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv22415,esv88 M 271 0 0 "" NA10861 nsv831226 1 120043641 120235510 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449228,nssv1449217 M 95 1 1 "" nsv10672 1 120099027 120122049 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19092 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18502 nsv2610 1 120163102 120195177 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7484 S 9 0 1 "" NA12156 dgv95e1 1 120181092 120290703 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2161,essv11166 M 271 0 0 "" NA18960,NA19211 dgv96e1 1 120181092 120409198 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv21516,essv22679,essv3206,essv17763,essv18958,essv2433,essv5065,essv3013,essv17605,essv22595,essv4682,essv16917,essv1755,essv548,essv6162,essv22070,essv5603,essv11006,essv24279,essv23192,essv21843,essv4918,essv7140,essv1145,essv7802,essv5113,essv23243,essv23448,essv24782,essv24972,essv6301,essv4574,essv22979,essv4412,essv15631,essv20379,essv15588,essv2827,essv5365,essv5820,essv1605,essv18408,essv7287,essv4302,essv6647,essv6890,essv24740,essv6630,essv20592,essv23772,essv20321,essv16521,essv4975,essv8184,essv20078,essv18144,essv19244,essv19979,essv12756,essv18722,essv23922,essv21418,essv21983,essv21210,essv3789,essv1448,essv22370,essv24399,essv1163,essv422,essv2883,essv23589,essv2622,essv24833,essv17434,essv140,essv17503,essv3106,essv3970,essv23831,essv22865,essv402 M 271 0 0 "" NA07000,NA07022,NA07029,NA07048,NA07056,NA07348,NA07357,NA10830,NA10831,NA10838,NA10839,NA10854,NA10856,NA10860,NA11829,NA11830,NA11839,NA11993,NA11995,NA12005,NA12006,NA12043,NA12154,NA12156,NA12236,NA12249,NA12707,NA12717,NA12752,NA12753,NA12760,NA12762,NA12763,NA12813,NA12814,NA12873,NA12874,NA12875,NA18524,NA18529,NA18532,NA18547,NA18558,NA18561,NA18563,NA18566,NA18573,NA18576,NA18577,NA18592,NA18603,NA18605,NA18608,NA18609,NA18621,NA18622,NA18637,NA18912,NA18914,NA18942,NA18943,NA18944,NA18951,NA18952,NA18953,NA18964,NA18967,NA18968,NA18969,NA18970,NA18971,NA18974,NA18981,NA18987,NA18997,NA18998,NA18999,NA19116,NA19137,NA19143,NA19144,NA19210 dgv97e1 1 120181092 120794484 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1868,essv66,essv4658,essv5231,essv4776 M 271 0 0 "" NA18594,NA18620,NA18624,NA18976,NA18991 nsv10683 1 120242617 120342962 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20760,nssv17403,nssv17089,nssv24294,nssv16751,nssv17408,nssv16417,nssv18062,nssv16762,nssv18086,nssv18437,nssv23370,nssv15445,nssv18422 M 31 13 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA11830,NA12155,NA12872,NA18563,NA18572,NA18942,NA18972,NA18980,NA19007,NA19221 dgv98e1 1 120245520 120409198 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv18636,essv20124 M 271 0 0 "" NA07345,NA12234 nsv508570 1 120408547 120564867 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622775,nssv618987 M 4 0 2 "" NA10860,NA18994 nsv831237 1 120479307 120581843 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449418,nssv1449462,nssv1449395,nssv1449384,nssv1449429,nssv1449451,nssv1449318,nssv1449440,nssv1449329,nssv1449307,nssv1449250,nssv1449340,nssv1449351,nssv1449261,nssv1449283,nssv1449407,nssv1449272,nssv1449362,nssv1449373,nssv1449239,nssv1449296 M 95 21 0 "" nsv10694 1 120515195 120515731 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24584 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18972 nsv10705 1 120517024 120517809 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19422,nssv16767 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA18502,NA19132 nsv10717 1 120520711 120521568 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21090 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19221 nsv10728 1 120523991 120524218 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15775,nssv17097 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18980,NA19132 nsv10739 1 120524971 120526339 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17086,nssv20759 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA18552,NA19173 nsv10750 1 120526862 120529710 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17738,nssv19752,nssv17427,nssv21420 M 31 4 0 Samples from several populations that are part of the HapMap project. "" NA12155,NA18502,NA19132,NA19221 nsv10761 1 120529710 120533265 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17416 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18552 nsv161091 1 120599714 120608489 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv179669 M 24 "" nsv2621 1 120600563 120634912 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1379 S 9 1 0 "" NA19240 nsv10772 1 120622342 120645107 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17746,nssv24899 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA18552,NA18972 esv2422184 1 120638494 120785686 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161231 S 181 1 0 "" ND03834 nsv10783 1 120699503 120718544 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21780 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19221 nsv831248 1 120702706 120771851 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449473 S 95 0 1 "" nsv506959 1 120740996 120746996 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623285 S 4 1 0 "" NA18994 dgv31n27 1 120776649 120923841 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv463406,nsv463395,nsv463350,nsv463383,nsv463361,nsv463372 M 1557 6 0 "" 1780854327_A,1780862227_A,1780862433_A,1780862597_A,1782681236_A,NINDS_230 dgv6e55 1 120784882 120903122 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv2750800,esv2750801,esv2750802 M 771 3 0 "" BEC_148,BEC_506,BEC_712 nsv521003 1 120812532 120923841 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv685111,nssv680164,nssv679659 M 2026 3 0 "" nsv821619 1 140342728 141384548 CNV Loss Sebat_et_al_2004 15273396 ROMA Custom Nimblegen photoprint 85000 probe ROMA oligo array nssv1421180 S 31 0 1 "" dgv99e1 1 141387477 141551836 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv4034,essv10005,essv6600 M 271 0 0 "" NA18621,NA18635,NA19099 dgv100e1 1 141387477 141979099 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv19989,essv23017,essv14487 M 271 0 0 "" NA07048,NA12812,NA19202 dgv101e1 1 141387477 143032961 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv6768,essv21191,esv853,essv4779,essv2192 M 271 0 0 "" NA11830,NA18562,NA18620,NA18960 nsv10805 1 141390462 141393330 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17757,nssv20082,nssv18068,nssv22110 M 31 4 0 Samples from several populations that are part of the HapMap project. "" NA12155,NA18502,NA19132,NA19221 nsv831259 1 141391046 141464860 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449506,nssv1449518,nssv1449484,nssv1449495,nssv1449529 M 95 5 0 "" nsv831270 1 141391046 141541913 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449540 S 95 1 0 "" nsv10816 1 141394280 141395120 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18436 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18552 nsv7881 1 141395971 141396184 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16105,nssv18087 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18980,NA19132 nsv7892 1 141397277 141397692 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19097 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18563 nsv7903 1 141398476 141399581 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18428,nssv22440,nssv18447 M 31 3 0 Samples from several populations that are part of the HapMap project. "" NA12155,NA19132,NA19221 nsv7914 1 141402371 141403156 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18777,nssv18758,nssv20412 M 31 3 0 Samples from several populations that are part of the HapMap project. "" NA12155,NA18502,NA19132 nsv7925 1 141404052 141404986 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25459,nssv17098 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA18972,NA19144 nsv7936 1 141447265 141451799 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22768 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19221 nsv7947 1 141463946 141550346 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23086 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19221 essv15187 1 141480746 142385363 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18504 nsv524682 1 141490941 142194534 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700653 S 2026 1 0 "" dgv102e1 1 141851837 141979099 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1528,essv18087,essv24296,essv1346,essv24420,essv20309,essv11036,essv20803,essv6891,essv24776,essv1176,essv24706,essv5333,essv560,essv25012,essv20427,essv15656,essv18410,essv11154,essv5492,essv23596,essv72,essv1110,essv2285,essv4018 M 271 0 0 "" NA10830,NA10839,NA10856,NA10860,NA11829,NA12006,NA12145,NA12146,NA12236,NA12249,NA12707,NA18563,NA18605,NA18632,NA18912,NA18951,NA18964,NA18966,NA18970,NA18980,NA18991,NA18998,NA19007,NA19143,NA19211 dgv103e1 1 141851837 142587762 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv16889,essv7772,essv5136,essv3515 M 271 0 0 "" NA18542,NA18564,NA18965,NA19205 dgv104e1 1 141851837 142972397 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv4396,essv815,essv6810,essv7402,essv11228,essv1848,essv6687,essv22858,essv3461,essv19527,essv2854,essv5522,essv22092,essv6141,essv6369,essv2638,essv7317,essv17810,essv22572,essv3026,essv4237,essv23780,essv4958,essv19240,essv24890,essv11644,essv5828,essv425,essv21540,essv23934,essv6995,essv7730,essv1436,essv3379,essv2793,essv1612,essv13900,essv134,essv5131,essv370 M 271 0 0 "" NA07000,NA07348,NA10831,NA10838,NA12154,NA12760,NA12763,NA12814,NA12864,NA12873,NA18529,NA18532,NA18566,NA18570,NA18573,NA18577,NA18579,NA18603,NA18608,NA18609,NA18612,NA18623,NA18633,NA18637,NA18854,NA18942,NA18944,NA18945,NA18952,NA18953,NA18967,NA18968,NA18971,NA18973,NA18976,NA18981,NA18987,NA18992,NA19154,NA19204 nsv7958 1 141862734 141863969 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21419 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19173 nsv7969 1 141866939 141869148 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16747 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA11830 nsv7980 1 141876675 141878018 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18446,nssv19761,nssv23396 M 31 0 3 Samples from several populations that are part of the HapMap project. "" NA18860,NA19007,NA19221 nsv831281 1 141892078 141977802 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449584,nssv1449551,nssv1449573,nssv1449562 M 95 4 0 "" nsv7992 1 141899136 142031000 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18752,nssv19758,nssv17081,nssv17733,nssv25718,nssv17419,nssv19088,nssv19427,nssv22424,nssv20088,nssv18430,nssv16419,nssv15755,nssv18079,nssv18435,nssv18776,nssv19418,nssv19107,nssv19423,nssv16435,nssv17092,nssv23680,nssv17749,nssv17077,nssv17406,nssv15425 M 31 21 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10847,NA10863,NA11830,NA12155,NA12740,NA12802,NA12872,NA18504,NA18517,NA18537,NA18563,NA18564,NA18572,NA18942,NA18972,NA18980,NA19007,NA19132 nsv7181 1 141911333 146073107 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4594,nssv5935,nssv6873,nssv3276,nssv5831,nssv10998,nssv1412,nssv9586,nssv2453,nssv9600,nssv6964,nssv10252,nssv9603,nssv11052,nssv10237,nssv4576,nssv9347,nssv9334,nssv1482,nssv2445,nssv1492,nssv6902,nssv6974,nssv3197,nssv2405,nssv3306,nssv3267 M 9 0 0 "" NA12156,NA12878,NA15510,NA18507,NA18517,NA18555,NA18956,NA19129,NA19240 nsv8003 1 142038668 142042436 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19082 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA07029 nsv8014 1 142046745 142049629 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17407 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA11830 nsv8025 1 142079386 142104395 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25963,nssv16085,nssv17737,nssv23981,nssv19106,nssv20418,nssv18063,nssv19757,nssv18439,nssv17422 M 31 10 0 Samples from several populations that are part of the HapMap project. "" NA07048,NA10839,NA10847,NA11830,NA18563,NA18564,NA18572,NA18942,NA18972,NA19007 nsv831292 1 142083448 142190866 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449595,nssv1449606 M 95 1 1 "" nsv831303 1 142100998 142194570 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449617,nssv1449629 M 95 0 2 "" nsv159823 1 142154713 142154713 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178401 M 24 "" nsv8036 1 142193003 142305493 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21779 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19173 nsv831315 1 142302852 142451520 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449640 S 95 0 1 "" nsv8047 1 142311884 142318346 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19748 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA12155 nsv510962 1 142351694 142774247 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622425,nssv624361 M 4 0 0 "" NA10860,NA18994 nsv509457 1 142351694 142976106 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621102 S 4 1 0 "" NA15510 nsv469838 1 142358979 142498181 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649859 M 265 0 0 Samples from several populations that are part of the HapMap project. "" nsv471603 1 142358980 142498181 CNV Loss Sharp et al 2005 15918152 BAC_aCGH,FISH Eichler Segmental Duplication BAC array nssv550825,nssv550824 M 48 0 2 "" NA11521,NA15732 nsv2 1 142364023 142402592 CNV Loss Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv2 S 1 0 1 "" NA15510 nsv2633 1 142364023 142402592 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv11009 S 9 0 1 "" NA15510 nsv8058 1 142374812 142379212 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22109,nssv18760 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA12802,NA19173 nsv821620 1 142374952 142584850 CNV Loss Sebat_et_al_2004 15273396 ROMA Custom Nimblegen photoprint 85000 probe ROMA oligo array nssv1421191 S 31 0 1 "" dgv105e1 1 142378509 143032961 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv14495,essv3195,essv17554,essv24245,essv22439,essv18393,essv8401,essv12921,essv19605,essv3292,essv22307,essv16506,essv22929,essv1504,essv4160,essv7206,essv16178,essv10898,essv20406,essv1380,essv12022,essv21027,essv8194,essv15562,essv24405,essv8953,essv4200,essv5062,essv5750,essv4657,essv6258,essv5485,essv11011,essv20061,essv17623,essv22422,essv21806,essv24804,essv19894,essv2490,essv24970,essv6869,essv6579,essv4692,essv18115,essv9719,essv12754,essv18702,essv7829,essv22843,essv22354,essv14473,essv1212,essv17274,essv21446,essv22754,essv18939,essv785,essv20570,essv23572,essv1136,essv23391,essv17429,essv15514 M 271 0 0 "" NA06985,NA06991,NA07019,NA07048,NA07056,NA07357,NA10830,NA10839,NA10854,NA10856,NA10860,NA10861,NA11839,NA11993,NA12004,NA12005,NA12006,NA12043,NA12155,NA12249,NA12707,NA12717,NA12753,NA12761,NA12762,NA12813,NA12874,NA12875,NA18503,NA18505,NA18506,NA18526,NA18547,NA18555,NA18558,NA18576,NA18593,NA18594,NA18605,NA18621,NA18622,NA18632,NA18636,NA18913,NA18914,NA18951,NA18956,NA18964,NA18972,NA18974,NA18980,NA19003,NA19007,NA19093,NA19094,NA19116,NA19137,NA19141,NA19143,NA19200,NA19201,NA19202,NA19209,NA19210 dgv106e1 1 142391276 142587762 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv8838,essv12774,essv4872,essv18630,essv3147,essv20953,essv21139,essv18339,essv7555,essv7263,essv17719,essv17975,essv13672,essv20647,essv3735,essv23550 M 271 0 0 "" NA06993,NA11994,NA12003,NA12234,NA12801,NA12815,NA12872,NA12892,NA18508,NA18545,NA18561,NA18592,NA18961,NA19012,NA19119,NA19120 dgv107e1 1 142391276 142744108 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv23848,essv8048,essv23250,essv18093,essv6498,essv13124 M 271 0 0 "" NA07022,NA07029,NA12145,NA18636,NA18859,NA19103 dgv108e1 1 142391276 142867140 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv3138,essv11175,essv21970,essv29,essv1232,essv6953,essv1778,essv555,essv2448,essv5296,essv1965,essv9990,essv24928,essv20342,essv11350,essv5180,essv22239,essv7879,essv24002,essv4550,essv2257,essv22640,essv5324,essv24708,essv11413,essv4826,essv2605,essv19183,essv15692,essv3810,essv21318,essv2060,essv4030,essv13384,essv20140,essv3981 M 271 0 0 "" NA06994,NA07345,NA11829,NA11995,NA12044,NA12236,NA12716,NA12752,NA12865,NA12878,NA18524,NA18540,NA18563,NA18582,NA18611,NA18624,NA18635,NA18857,NA18912,NA18943,NA18949,NA18959,NA18966,NA18969,NA18970,NA18990,NA18991,NA18995,NA18997,NA18998,NA18999,NA19099,NA19128,NA19140,NA19159,NA19211 esv32934 1 142409062 142568859 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93925,essv100726 M 51 1 1 "" 21634,21656 nsv8069 1 142437427 142570095 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17411,nssv26188,nssv18423,nssv16765,nssv16415,nssv18067,nssv20087,nssv20078,nssv24275,nssv20748,nssv19436,nssv17752,nssv18769,nssv19412 M 31 14 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10847,NA11830,NA12155,NA12872,NA18563,NA18564,NA18572,NA18942,NA18972,NA18980,NA19007 nsv158975 1 142439306 142439306 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv177553 M 24 "" dgv109e1 1 142440042 142545761 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv16389,essv9836,essv19053,essv24950,essv8491,essv8901,essv13965 M 271 0 0 "" NA11830,NA12707,NA18854,NA19144,NA19160,NA19171,NA19172 dgv110e1 1 142440042 142592972 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv11074,essv18894,essv19136,essv13392 M 271 0 0 "" NA12717,NA12812,NA18872,NA19138 essv966 1 142445417 142454610 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18981 nsv831326 1 142451521 142569005 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449651,nssv1449684,nssv1449695,nssv1449662,nssv1449673 M 95 0 5 "" essv2737 1 142504034 142521785 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18965 nsv2644 1 142560553 142597340 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3188,nssv2350,nssv1422,nssv6920,nssv5855 M 9 0 5 "" NA12156,NA12878,NA18555,NA19129,NA19240 dgv111e1 1 142575854 142972397 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv17019,essv23181 M 271 0 0 "" NA12156,NA19144 nsv161167 1 142581993 142586126 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv179745 M 24 "" essv1329 1 142592972 142694585 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18973 essv18481 1 142592972 142744108 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12156 nsv2655 1 142606540 142707448 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2369,nssv5863,nssv6931 M 9 0 3 "" NA12156,NA18555,NA19129 nsv469755 1 142629985 142777460 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649776 M 265 0 61 Samples from several populations that are part of the HapMap project. "" nsv437982 1 142642590 142661662 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv468075,nssv468063 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA12802,NA12814 nsv2666 1 142654790 142686153 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1431 S 9 1 0 "" NA19240 nsv8080 1 142666850 142668023 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17736 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA10863 nsv8091 1 142678163 142861691 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23706,nssv18765,nssv17741,nssv18082,nssv17750,nssv21078,nssv19099,nssv18766,nssv20408,nssv19753,nssv16745,nssv19742,nssv18427,nssv18753,nssv17095,nssv24565,nssv22439,nssv24007,nssv26394,nssv20738,nssv22752,nssv17754,nssv20072,nssv18091,nssv17425 M 31 21 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10847,NA11830,NA12155,NA12872,NA18504,NA18517,NA18537,NA18552,NA18564,NA18572,NA18853,NA18942,NA18972,NA18975,NA18980,NA19173,NA19221,NA19240 nsv831337 1 142678364 142882514 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449728,nssv1449706,nssv1449740,nssv1449751,nssv1449717 M 95 0 5 "" nsv831348 1 142699389 142797869 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449762,nssv1449784,nssv1449773 M 95 0 3 "" esv2422428 1 142748836 143098352 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161431 S 181 1 0 "" ND04584 nsv2677 1 142749719 142881712 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9590,nssv11021,nssv3215,nssv3206,nssv2379,nssv2388,nssv1441,nssv9330,nssv10233,nssv5871 M 9 0 8 "" NA12878,NA15510,NA18507,NA18517,NA18555,NA18956,NA19129,NA19240 nsv508582 1 142774247 142876405 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618988 S 4 0 1 "" NA10860 nsv831359 1 142780000 142940516 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449817,nssv1449806,nssv1449795 M 95 0 3 "" nsv160157 1 142780887 142780999 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178735 M 24 "" nsv433348 1 142783575 142874719 CNV Gain Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463229 S 9 1 0 Samples from several populations that are part of the HapMap project. "" NA12156 nsv13 1 142814140 142846010 CNV Loss Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv13 S 1 0 1 "" NA15510 essv16633 1 142820056 142904570 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19142 dgv112e1 1 142820056 142972397 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv12204,essv16881 M 271 0 0 "" NA19101,NA19205 nsv24 1 142838764 142868842 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv24 S 1 1 0 "" NA15510 nsv2688 1 142838764 142868842 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv11025,nssv9591 M 9 2 0 "" NA15510,NA18507 dgv3n6 1 142850931 142855656 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv159326,nsv160059,nsv160266 M 24 "" nsv160210 1 142852482 142855656 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178788 M 24 "" nsv160417 1 142853802 142855358 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178995 M 24 "" nsv2699 1 142871719 142905835 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3223 S 9 1 0 "" NA12878 dgv32n27 1 142883999 143236507 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv463439,nsv463417,nsv463428 M 1557 3 0 "" 1780854484_A,1780862457_A,NINDS_208 nsv831370 1 142890297 143095231 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449828 S 95 1 0 "" nsv8103 1 142960564 142964079 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20742,nssv24301 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA18502,NA19221 esv33401 1 142960766 142963009 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100051 S 51 1 0 "" 22086 nsv831381 1 142963202 143139555 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449839 S 95 1 0 "" nsv508593 1 142976106 143292705 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620142 S 4 0 1 "" NA15510 nsv2710 1 142996662 143029489 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5872 S 9 1 0 "" NA19129 esv32826 1 143050261 143051508 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv94065 S 51 1 0 "" 21802 essv1683 1 143086160 143482819 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18992 esv34671 1 143086160 143482819 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6987356,essv6978251,essv6978252,essv6978253 M 771 0 1 "" NA18992 esv529 1 143086160 143922358 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent + Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 "" dgv33n27 1 143099254 143236507 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv463450,nsv463472 M 1557 0 2 "" HGDP00766,NINDS_110 nsv831392 1 143110972 143291721 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449851 S 95 1 0 "" nsv818411 1 143115023 143236507 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417650 S 112 0 1 "" NA18992 esv33868 1 143115310 143293752 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99048 S 51 0 1 "" 21938 essv3464 1 143117214 143257561 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18992 nsv469752 1 143134083 143284651 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649773 M 265 0 1 Samples from several populations that are part of the HapMap project. "" nsv463483 1 143146752 143170528 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv539503 S 1557 0 1 "" 1782681247_A nsv463494 1 143146752 143236507 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv539514 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01406 dgv113e1 1 143352668 143778734 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv9663,essv15401,essv2172 M 271 0 0 "" NA18913,NA18960,NA19203 dgv114e1 1 143352668 143922358 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv16866,essv11250,essv14562 M 271 0 0 "" NA19202,NA19204,NA19205 nsv510973 1 143354132 144731703 OTHER Inversion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624362,nssv621654,nssv621655 M 4 0 0 "" NA15510,NA18994 nsv8114 1 143411682 143413630 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22767 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19173 nsv8125 1 143449504 143460725 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23085 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19173 nsv831403 1 143481253 143696807 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449862 S 95 1 0 "" nsv8136 1 143503481 143509222 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17428,nssv21068 M 31 1 1 Samples from several populations that are part of the HapMap project. "" NA12155,NA19144 nsv160132 1 143519322 143525548 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178710 M 24 "" nsv2721 1 143526791 143581082 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10241 S 9 0 1 "" NA18956 nsv482114 1 143545025 143549782 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558475 S 1 1 0 "" KB1 nsv8147 1 143556995 143559253 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23395 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19173 nsv8158 1 143629377 143694905 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21398,nssv24591 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA12155,NA19221 nsv2732 1 143688732 143703744 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9597,nssv6954 M 9 2 0 "" NA12156,NA18507 nsv2744 1 143716153 143718941 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5902 S 9 1 0 "" NA19129 nsv8169 1 143868147 143870811 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16749 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA12740 nsv437047 1 143868371 144066418 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv466928 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA12752 nsv159869 1 143883036 143883036 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178447 M 24 "" esv33421 1 144070569 144073468 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98899,essv99917 M 51 0 2 "" 21606,22086 nsv831414 1 144109810 144308682 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449884,nssv1449895,nssv1449873 M 95 3 0 "" nsv159275 1 144185162 144185162 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv177853 M 24 "" nsv831426 1 144314746 144490083 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449906 S 95 0 1 "" esv32902 1 144332189 144332788 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100674 S 51 1 0 "" 21656 nsv463506 1 144416657 144534259 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv539525 S 1557 1 0 "" 1780854090_A nsv463517 1 144416657 144600797 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv539536 S 1557 1 0 "" 1780862040_A nsv831437 1 144459423 144617808 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449917 S 95 0 1 "" nsv160897 1 144617424 144617424 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv179475 M 24 "" nsv8180 1 144708661 144710608 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23705 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19173 dgv115e1 1 144800023 145023900 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv15149,essv16212 M 271 0 0 "" NA19129,NA19161 dgv116e1 1 144800023 145140950 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv591,essv18923 M 271 0 0 "" NA12005,NA18998 dgv117e1 1 144800023 146809052 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv10704,essv21927,essv8055,essv1850,essv2387,essv2131,essv2977,essv4790,essv1225,essv19728,essv2254,essv21103,essv16863,essv14134,essv18067,essv23239,essv24666,essv2779,essv23516,essv91,essv17613,essv19982,essv6845,essv5604,essv19350,essv3958,essv18380,essv11239,essv8654,essv6416,essv2163,essv6906,essv6084,essv14506,essv2771,essv5819,essv8706,essv17815,essv6936,essv22662,essv6397,essv16504,essv6270,essv25169,essv15619,essv5499,essv15398,essv24338,esv834,essv19241,essv4228,essv23894,essv7231,essv12812,essv23641,essv19528,essv11729,essv10988,essv18756,essv1601,essv1416,essv3354,essv1190,essv480,essv6809,essv2890,essv22893,essv1936,essv14225,essv5139,essv1126,essv2666,essv4704,essv19130,essv8206,essv7353,essv16169,essv7005,essv365 M 271 0 0 "" NA06985,NA07029,NA07034,NA07048,NA07055,NA10831,NA10838,NA10854,NA10859,NA11829,NA11840,NA11882,NA12044,NA12057,NA12145,NA12249,NA12752,NA12753,NA12760,NA12814,NA12864,NA12874,NA18506,NA18508,NA18529,NA18545,NA18547,NA18558,NA18564,NA18566,NA18570,NA18572,NA18579,NA18603,NA18605,NA18608,NA18612,NA18620,NA18621,NA18622,NA18632,NA18636,NA18861,NA18912,NA18913,NA18942,NA18944,NA18945,NA18951,NA18952,NA18953,NA18959,NA18960,NA18964,NA18966,NA18967,NA18970,NA18971,NA18976,NA18978,NA18981,NA18987,NA18995,NA19000,NA19005,NA19101,NA19103,NA19116,NA19120,NA19143,NA19154,NA19200,NA19202,NA19203,NA19204,NA19205,NA19210 nsv510984 1 144807538 145104655 OTHER Inversion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624363 S 4 0 0 "" NA18994 nsv831448 1 144813265 144977306 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449928 S 95 0 1 "" esv2750803 1 144850699 146008678 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6986065,essv6982027 M 771 1 0 "" BEC_514 nsv8191 1 144867529 144870104 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24906 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19221 nsv8202 1 144888103 144905326 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25186,nssv18066,nssv21072 M 31 3 0 Samples from several populations that are part of the HapMap project. "" NA10863,NA18502,NA19221 dgv118e1 1 144917189 146034535 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv19038,essv12952,essv23307,essv22691 M 271 0 0 "" NA07034,NA12004,NA12264,NA19102 dgv119e1 1 144920632 145140950 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv24297,essv24872,essv20318,essv22984,essv11091,essv24394,essv19640,essv5407,essv3785,essv20126,essv4995,essv21214,essv24979,essv10829,essv21512,essv22397,essv10940,essv7793,essv3142,essv18156 M 271 0 0 "" NA07000,NA07345,NA07357,NA10839,NA10856,NA11830,NA11993,NA12155,NA12236,NA12707,NA12873,NA12875,NA18558,NA18563,NA18637,NA18871,NA18943,NA18969,NA19209,NA19211 dgv120e1 1 144920632 145734052 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv9741,essv1410,essv6192,essv3856,essv15554,essv21457,essv20397,essv16702,essv22588,essv157,essv12744,essv22828,essv20600,essv24766 M 271 0 0 "" NA07056,NA07348,NA10830,NA10860,NA12004,NA12717,NA18532,NA18913,NA18914,NA18968,NA18994,NA19007,NA19137,NA19142 nsv441712 1 144922187 144923845 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv7e55 1 144925278 146526972 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv2750804,esv2750805,esv2750806 M 771 0 3 "" BEC_53,BEC_607,BEC_74 esv2750807 1 144936917 146689197 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6988890,essv6987154,essv6985102,essv6985103,essv6985104 M 771 1 0 "" SPC_1 essv23084 1 144946926 145463739 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12812 nsv8214 1 144971442 144975456 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21408 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18564 nsv8225 1 145027856 145131659 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19083,nssv17755,nssv18442,nssv19095,nssv20747,nssv22088,nssv19766,nssv26567,nssv17079,nssv22098,nssv18426,nssv20417,nssv19429,nssv21758,nssv19759,nssv18757,nssv23070,nssv21768,nssv17075,nssv20083,nssv18071,nssv17405,nssv21077,nssv19090,nssv22428,nssv24880,nssv20402,nssv20089 M 31 20 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10847,NA10863,NA11830,NA12155,NA12740,NA12802,NA12872,NA18504,NA18517,NA18537,NA18563,NA18564,NA18572,NA18942,NA18972,NA18980,NA19007 dgv121e1 1 145043332 145140950 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv4359,essv15453 M 271 0 0 "" NA18505,NA18573 nsv2755 1 145091741 145127244 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3286,nssv11043,nssv7576,nssv2461 M 9 4 0 "" NA12156,NA12878,NA15510,NA18555 dgv122e1 1 145115762 146524632 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv22727,essv1563,essv15960,essv14239,essv25167,essv5618,essv5887,essv11482,essv7932,essv20532,essv18578,essv21892,essv12093 M 271 0 0 "" NA06991,NA10851,NA11839,NA11995,NA12239,NA18576,NA18593,NA18856,NA18997,NA19099,NA19100,NA19142,NA19209 nsv35 1 145124326 145125713 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv35 S 1 1 0 "" NA15510 nsv441713 1 145293397 145569053 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv508604 1 145302447 146265791 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622776 S 4 0 1 "" NA18994 esv33539 1 145338955 146528758 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101256,essv96764,essv100936,essv98280,essv94654,essv95366,essv92827,essv96191,essv97263,essv98568,essv99660,essv99370 M 51 4 8 "" 21618,21659,21693,21772,21791,21872,21944,22007,22075,22085,22217,22335 nsv469683 1 145351699 145576467 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649614 M 265 0 2 Samples from several populations that are part of the HapMap project. "" nsv8236 1 145368296 145373983 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18084,nssv22418 M 31 1 1 Samples from several populations that are part of the HapMap project. "" NA12155,NA18975 nsv8247 1 145375681 145418424 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22746,nssv26726,nssv19413,nssv25160,nssv20732,nssv20096,nssv19437,nssv19087,nssv17735,nssv18431,nssv21407,nssv18085,nssv18772,nssv22756 M 31 14 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10847,NA11830,NA12155,NA12872,NA18563,NA18564,NA18942,NA18972,NA18980,NA19007,NA19132 essv6701 1 145513740 145671828 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18608 dgv123e1 1 145513740 146711869 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv14396,essv11872,essv8454,essv15275,essv3738,essv9907,essv9258,essv10122,essv7090,essv6764,essv3695,essv5263,essv13787,essv24045,essv15814,essv5215,essv11998,essv13426,essv13052,essv18591,essv22508,essv646,essv5931,essv15372,essv17061,essv20194,essv19678,essv18254,essv12374,essv21541,essv17529,essv16309,essv23127,essv14776,essv19953,essv10403 M 271 0 0 "" NA10846,NA10859,NA11832,NA11882,NA12234,NA12264,NA12762,NA12813,NA12873,NA12891,NA18507,NA18516,NA18517,NA18537,NA18550,NA18562,NA18611,NA18624,NA18852,NA18862,NA18947,NA18961,NA18975,NA19094,NA19128,NA19130,NA19145,NA19153,NA19159,NA19161,NA19172,NA19192,NA19221,NA19222,NA19223,NA19238 nsv433349 1 145530125 145730801 CNV Gain Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463230 S 9 1 0 Samples from several populations that are part of the HapMap project. "" NA19240 nsv8258 1 145530340 145536465 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18444,nssv23064 M 31 1 1 Samples from several populations that are part of the HapMap project. "" NA12155,NA18975 nsv8269 1 145537725 145580817 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18065,nssv19767,nssv19743,nssv19417,nssv26866,nssv21767,nssv20426,nssv19102,nssv25440,nssv18761,nssv18445,nssv23074,nssv23374,nssv21062 M 31 14 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10847,NA11830,NA12155,NA12872,NA18563,NA18564,NA18942,NA18972,NA18980,NA19007,NA19132 nsv831459 1 145579237 145728108 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449939 S 95 1 0 "" dgv124e1 1 145669829 146093292 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv21629,essv23013,essv14154,essv16323,essv9320,essv6431,essv21335 M 271 0 0 "" NA07348,NA12812,NA12878,NA18592,NA18853,NA19140,NA19193 dgv125e1 1 145669829 146803586 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv24466,essv21252,essv3239,essv15523,essv10447,essv21826,essv20243,essv55,essv17231,essv16404,essv3899,essv10782,essv12312,essv543,essv2459,essv4592,essv10579,essv6129,essv19622,essv17872,essv11184,essv12576,essv8734,essv13582,essv24888,essv5355,essv20464,essv4903,essv24384,essv6040,essv21203,essv19415,essv7409,essv13676,essv15001,essv16059,essv20345,essv16973,essv14353,essv22445,essv21474,essv9110,essv5085,essv14637,essv18447,essv10259,essv2580,essv18851,essv23385,essv6359,essv8140,essv13915,essv24310,essv10665,essv7782,essv11489,essv2522,essv12976,essv25006,essv15578,essv21119,essv9759,essv4476,essv828,essv9045,essv15075,essv17186,essv16750,essv19175,essv17722,essv23811,essv15771,essv9644,essv21397,essv703,essv23533,essv3814,essv22394,essv17982,essv22325,essv13564,essv19022,essv784,essv11910,essv21717,essv3553,essv23449,essv20120,essv11735,essv23193,essv9975,essv3134,essv4381 M 271 0 0 "" NA06985,NA06993,NA06994,NA07000,NA07345,NA10830,NA10839,NA10854,NA10855,NA10856,NA10857,NA11830,NA11831,NA11839,NA11840,NA12003,NA12005,NA12056,NA12144,NA12155,NA12156,NA12236,NA12248,NA12707,NA12740,NA12750,NA12751,NA12761,NA12763,NA12815,NA12865,NA12872,NA12875,NA18501,NA18502,NA18503,NA18504,NA18505,NA18515,NA18523,NA18524,NA18532,NA18542,NA18552,NA18561,NA18563,NA18571,NA18573,NA18577,NA18609,NA18623,NA18854,NA18855,NA18859,NA18860,NA18863,NA18870,NA18872,NA18940,NA18943,NA18956,NA18965,NA18969,NA18973,NA18974,NA18990,NA18991,NA18994,NA18998,NA18999,NA19003,NA19092,NA19093,NA19098,NA19099,NA19119,NA19127,NA19129,NA19131,NA19132,NA19137,NA19138,NA19139,NA19141,NA19144,NA19152,NA19160,NA19171,NA19173,NA19194,NA19206,NA19211,NA19240 nsv8280 1 145675075 145683537 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25466 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19221 dgv126e1 1 145700996 146600459 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1300,essv20523,essv20734,essv3453,essv14886,essv5662,essv22616,essv10845,essv5854,essv21364,essv2935,essv1715,essv24181,essv7239,essv6462,essv6790,essv19885,essv8356,essv18551,essv19363,essv12661,essv3305,essv8647,essv13497,essv19302,essv14456 M 271 0 0 "" NA07019,NA07022,NA07056,NA07357,NA10860,NA11881,NA11993,NA12154,NA12716,NA18500,NA18522,NA18526,NA18555,NA18594,NA18635,NA18637,NA18858,NA18871,NA18914,NA18968,NA18972,NA18980,NA18992,NA19007,NA19201,NA19239 nsv8291 1 145701968 145713679 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25725 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19221 nsv831470 1 145720000 145855070 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449950 S 95 1 0 "" dgv127e1 1 145807637 146039625 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv6535,essv942,essv18916 M 271 0 0 "" NA12717,NA18611,NA18949 nsv8302 1 145812747 146405512 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20094,nssv20752,nssv19747,nssv22427,nssv19111,nssv20085,nssv25164,nssv19096,nssv18088,nssv19762,nssv20415,nssv20751,nssv24300,nssv17758,nssv24590,nssv21086,nssv20419,nssv20743,nssv20427,nssv24285,nssv25699,nssv20073,nssv18759,nssv23384,nssv23995,nssv20733,nssv20403,nssv18755,nssv20756,nssv21409,nssv20092,nssv19746,nssv23073,nssv17739,nssv22755,nssv23991,nssv19085,nssv21073,nssv19750,nssv24569,nssv23985,nssv20407,nssv21063,nssv19421,nssv19415,nssv19426,nssv22412,nssv18080,nssv24884,nssv22740,nssv19755,nssv20091,nssv18451,nssv20421,nssv23684,nssv19420,nssv24279,nssv19432,nssv24006,nssv22097,nssv18069,nssv21079,nssv19764,nssv19100,nssv20422,nssv20097,nssv19434,nssv18756,nssv18429,nssv21763,nssv18775,nssv19425,nssv21403,nssv23694,nssv22082,nssv20077,nssv18770,nssv25970,nssv18425,nssv21081,nssv22093,nssv18440,nssv20749,nssv19091,nssv23690,nssv21392,nssv19089,nssv18774,nssv18781,nssv21402,nssv20413,nssv24575,nssv21752,nssv27030,nssv23380,nssv19416,nssv19104,nssv20080,nssv19086,nssv17409,nssv24890 M 31 30 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10847,NA10863,NA11830,NA12155,NA12740,NA12802,NA12872,NA18502,NA18504,NA18517,NA18537,NA18552,NA18563,NA18564,NA18572,NA18853,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19144,NA19173,NA19221,NA19240 nsv441790 1 145816116 146039008 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv10n17 1 145816962 145826570 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437240,nsv437241 M 60 0 2 "" NA18506,NA19103 nsv818422 1 145818712 145824697 CNV Gain+Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415880,nssv1416295,nssv1418414,nssv1417221,nssv1416296,nssv1417992,nssv1417592 M 112 1 6 "" NA06991,NA11995,NA18576,NA18855,NA18857,NA18978,NA19142 dgv34n27 1 145818712 145844113 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv463528,nsv463539,nsv463583,nsv463550,nsv463572,nsv463561 M 1557 0 6 "" 1780854095_A,1780854455_A,1780862246_A,1780862261_A,1780862384_A,NINDS_38 nsv818433 1 145818712 145844113 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416494,nssv1418340,nssv1416483,nssv1417386 M 112 0 4 "" NA10857,NA12044,NA12239,NA18949 nsv818445 1 145818712 145940029 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417965,nssv1416217,nssv1416293,nssv1417264,nssv1416215,nssv1417966,nssv1418039,nssv1417881 M 112 0 8 "" NA06985,NA07348,NA07357,NA10851,NA11881,NA12057,NA18593,NA18856 dgv35n27 1 145818712 145991088 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv463672,nsv463705,nsv463628,nsv463605,nsv463661,nsv463750,nsv463617,nsv463716,nsv463728,nsv463639,nsv463683,nsv463594,nsv463739,nsv463650,nsv463694 M 1557 0 15 "" HGDP00007,HGDP00033,HGDP00045,HGDP00458,HGDP00530,HGDP00607,HGDP00612,HGDP00615,HGDP00720,HGDP00768,HGDP00772,HGDP00881,HGDP01096,HGDP01242,HGDP01375 nsv433189 1 145818712 145991088 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463070 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA18555 nsv818456 1 145818712 145991088 CNV Gain+Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418040,nssv1418041,nssv1417200,nssv1415807,nssv1418528,nssv1416998,nssv1417117,nssv1417311,nssv1415808,nssv1418527,nssv1417517 M 112 3 8 "" NA06994,NA10830,NA10859,NA10860,NA11882,NA11993,NA12154,NA12264,NA18558,NA18608,NA18968 dgv11n17 1 145819522 145944876 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437069,nsv437091 M 60 0 2 "" NA10830,NA12752 esv2750808 1 145819658 146035000 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6981512,essv6988412 M 771 1 0 "" BEC_289 esv2750809 1 145819658 146526972 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6985823,essv6985822 M 771 1 0 "" SPC_61 nsv437993 1 145821414 145822267 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv468097,nssv468086 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA10857,NA12044 nsv437058 1 145821414 145869554 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv466939 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA10857 dgv12n17 1 145821414 145903744 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437102,nsv437080 M 60 0 2 "" NA07348,NA12753 nsv437113 1 145869554 145903744 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv466994 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA07048 nsv437242 1 145886015 145908227 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467123 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18506 nsv831481 1 145894522 146153461 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450117,nssv1450039,nssv1450184,nssv1450139,nssv1450084,nssv1450172,nssv1450050,nssv1450073,nssv1450128,nssv1449995,nssv1450061,nssv1450028,nssv1450195,nssv1450106,nssv1450017,nssv1450150,nssv1449984,nssv1449973,nssv1450206,nssv1450095,nssv1450228,nssv1450161,nssv1449962,nssv1450006,nssv1450217 M 95 25 0 "" nsv2766 1 145944833 145978196 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3325 S 9 1 0 "" NA12878 nsv438004 1 145980718 145997585 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv468119,nssv468141,nssv468152,nssv468186,nssv468163,nssv468174,nssv468108,nssv468130 M 269 0 8 Samples from several populations that are part of the HapMap project. "" NA07048,NA07055,NA10857,NA12044,NA18506,NA18508,NA18856,NA18857 dgv13n17 1 145994772 146022913 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437135,nsv437124 M 60 0 2 "" NA06991,NA07048 nsv438015 1 146008678 146022913 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv468208,nssv468197 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA19099,NA19100 nsv437243 1 146018097 146028519 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467124 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19100 nsv159959 1 146074498 146074498 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178537 M 24 "" nsv160403 1 146150579 146150898 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178981 M 24 "" nsv831492 1 146386893 146548299 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450239,nssv1450250 M 95 2 0 "" nsv508035 1 146389454 146395454 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618506 S 4 0 1 "" CHM nsv8313 1 146429730 146431049 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21411,nssv21416,nssv26195 M 31 0 3 Samples from several populations that are part of the HapMap project. "" NA18860,NA19007,NA19221 nsv508036 1 146437220 146443220 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622295,nssv621478,nssv618507 M 4 0 3 "" CHM,NA10860,NA15510 nsv8325 1 146443720 146445004 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24905 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19173 nsv831503 1 146453716 146633914 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450272,nssv1450429,nssv1450383,nssv1450495,nssv1450440,nssv1450361,nssv1450407,nssv1450339,nssv1450484,nssv1450394,nssv1450451,nssv1450372,nssv1450418,nssv1450317,nssv1450261,nssv1450462,nssv1450328,nssv1450283,nssv1450350,nssv1450295,nssv1450473,nssv1450306 M 95 22 0 "" nsv8336 1 146457879 146477799 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20076,nssv25170,nssv21393,nssv23383,nssv23058,nssv19756,nssv22423 M 31 7 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10863,NA18504,NA18517,NA18552,NA18563 nsv831514 1 146467025 146525833 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450518,nssv1450540,nssv1450529,nssv1450506 M 95 4 0 "" nsv2777 1 146495450 146553716 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3361,nssv2514 M 9 0 2 "" NA12878,NA18555 nsv469694 1 146501925 146649353 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649626 M 265 0 3 Samples from several populations that are part of the HapMap project. "" nsv831525 1 146514610 146691106 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450562,nssv1450551 M 95 2 0 "" essv23032 1 146522914 146711869 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12812 nsv160066 1 146527523 146531359 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178644 M 24 "" nsv8347 1 146563711 146566643 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19745,nssv20086 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA10847,NA18552 nsv7182 1 146586311 146679585 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv11074,nssv1527,nssv2522,nssv7036,nssv7042 M 9 0 0 "" NA12156,NA15510,NA18555,NA19240 nsv46 1 146634712 146666180 OTHER Inversion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv46 S 1 0 0 "" NA15510 nsv831537 1 146646430 146877728 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450573 S 95 0 1 "" nsv508037 1 146701823 146707823 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618508 S 4 0 1 "" CHM nsv8358 1 146788867 146790144 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25444 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA12155 nsv8369 1 146808090 146809761 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25185,nssv21762,nssv25450,nssv19105,nssv23368,nssv19419,nssv20757,nssv20737,nssv21753 M 31 0 9 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA11830,NA12740,NA18502,NA18517,NA18980,NA19132,NA19173 nsv160821 1 146850926 146850981 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv179399 M 24 "" nsv831548 1 147081781 147248789 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450595,nssv1450584 M 95 0 2 "" nsv527379 1 147340427 147355201 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703811 S 2026 0 1 "" nsv437158 1 147465275 147496585 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467039 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA12753 nsv520425 1 147483025 147486757 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv671343,nssv678859 M 2026 0 2 "" nsv528859 1 147486757 147488556 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705538 S 2026 0 1 "" nsv437169 1 147551270 147629959 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467050 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA12753 nsv2788 1 147568407 147613858 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7052 S 9 0 1 "" NA12156 nsv2799 1 147577272 147591508 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3372 S 9 1 0 "" NA12878 nsv160180 1 147578349 147585743 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178758 M 24 "" nsv2810 1 147648246 147692942 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7643 S 9 0 1 "" NA12156 nsv522317 1 147746796 147787235 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695097 S 2026 0 1 "" nsv522840 1 147746796 148160819 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698492 S 2026 1 0 "" dgv2n68 1 147922532 148094851 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH nsv831570,nsv831559 M 95 0 3 "" esv34461 1 148053615 148224708 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6979360,essv6990355 M 771 1 0 "" NA18537 nsv2821 1 148084197 148115032 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7059 S 9 1 0 "" NA12156 nsv831581 1 148102224 148291678 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450640 S 95 0 1 "" nsv438026 1 148131806 148157776 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv468219,nssv468230 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA18853,NA18854 dgv128e1 1 148141867 148224708 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv7497,essv619,essv2915,essv2123,esv1024,essv4927 M 271 0 0 "" NA18537,NA18561,NA18959,NA18998,NA19007 nsv8380 1 148142960 148223419 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20745,nssv21776 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA18537,NA19007 nsv818467 1 148146240 148217921 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417131,nssv1417433 M 112 2 0 "" NA18537,NA18952 dgv36n27 1 148146240 148226253 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv463827,nsv463816,nsv463772,nsv463839,nsv463783,nsv463761,nsv463805,nsv463794 M 1557 8 0 "" HGDP00127,HGDP00714,HGDP00782,HGDP00964,HGDP01185,HGDP01305,HGDP01308,HGDP01311 nsv441714 1 148149772 148210951 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv2832 1 148231331 148264913 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1545 S 9 1 0 "" NA19240 nsv522757 1 148333804 148335006 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698396 S 2026 0 1 "" nsv2843 1 148413142 148457782 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7656 S 9 0 1 "" NA12156 nsv516369 1 148593250 148633397 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv672480,nssv694803,nssv667816 M 2026 3 0 "" nsv160848 1 148602682 148609842 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv179426 M 24 "" nsv2855 1 148749543 148779454 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7664 S 9 0 1 "" NA12156 nsv2866 1 148873919 148906467 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10264 S 9 1 0 "" NA18956 nsv438037 1 148893062 148897112 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv468252,nssv468241 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA12707,NA12716 nsv482125 1 148939144 148944777 CNV Loss Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558486 S 1 0 1 "" KB1 nsv509468 1 148973205 149084946 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619814,nssv621103,nssv623794 M 4 3 0 "" NA10860,NA15510,NA18994 nsv528426 1 148974808 148975179 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705019 S 2026 0 1 "" nsv2877 1 148976596 149018663 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3381,nssv2531,nssv11080,nssv7067 M 9 4 0 "" NA12156,NA12878,NA15510,NA18555 nsv57 1 148996248 149000224 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv57 S 1 1 0 "" NA15510 nsv471347 1 148997631 149009742 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548038,nssv548040,nssv548039 M 3 "" nsv8391 1 148998401 149007156 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23693,nssv22751,nssv27160,nssv22106,nssv21082,nssv20075,nssv21067,nssv19749,nssv22083,nssv20406,nssv21075,nssv24289,nssv21769,nssv20416,nssv20424,nssv25703 M 31 15 1 Samples from several populations that are part of the HapMap project. "" NA07048,NA10847,NA10863,NA11830,NA12155,NA12740,NA18504,NA18537,NA18552,NA18563,NA18564,NA18572,NA18942,NA18972,NA18975,NA19007 nsv159214 1 149027004 149036779 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv177792 M 24 "" nsv7183 1 149076419 149096687 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2542 S 9 0 0 "" NA18555 nsv471348 1 149087724 149110752 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548043,nssv548041,nssv548042 M 3 "" nsv159623 1 149093812 149097702 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178201 M 24 "" nsv516541 1 149189783 149203525 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv669003,nssv672545 M 2026 0 2 "" nsv463850 1 149224163 149247082 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv539866 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01193 esv2750810 1 149266742 149474000 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6980785,essv6988316,essv6985409,essv6980783,essv6980784 M 771 1 0 "" BEC_158 dgv129e1 1 149285912 149400186 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv3194,essv671,essv1277,essv20799,essv2499,essv7028,essv5149,essv21128,essv21762,essv11002,essv6024,essv20328,essv6828,essv23769,essv23125,essv24506,essv19642,essv22486,essv22655,essv4622,essv24562,essv24989,essv2454,essv5723,essv7292,essv19087,essv2314,essv24148,essv13516,essv21452,essv4917,essv5116,essv4837,essv11742,essv15529,essv3135 M 271 0 0 "" NA07055,NA10839,NA10847,NA11882,NA11992,NA12146,NA12155,NA12236,NA12239,NA12717,NA12752,NA12763,NA12802,NA12815,NA12891,NA18504,NA18505,NA18540,NA18561,NA18564,NA18571,NA18577,NA18579,NA18592,NA18593,NA18594,NA18612,NA18940,NA18969,NA18974,NA18975,NA18995,NA18999,NA19003,NA19143,NA19160 dgv130e1 1 149285912 149503146 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv13141,essv818,essv16511,essv17307,essv18170,essv1524,essv2993,essv4754,essv49,essv12458,essv3900,essv1625,essv22558,essv10805,essv15432,essv18589,essv15143,essv17732,essv5526,essv24236,essv12570,essv10077,essv23205,essv12217,essv14165,essv6569,essv24817,essv16411,essv13747,essv5177,essv21007,essv9604,essv3306,essv24902,essv11520,essv1733,essv24652,essv18927,essv12366,essv16657,essv16944,essv8122,essv8933,essv5460,essv4597,essv8653,essv15727,essv17449,essv20282,essv123,essv4087,essv6255,essv12849,essv20883,essv10247,essv4969,essv13054,essv17068,essv20085,essv23040,essv11723,essv13647,essv10625,essv5321,essv11425,essv9026,essv16324,essv16142,essv23881,essv14339,essv21373,essv266,essv558,essv16789,essv17209,essv18275,essv10158,essv15662,essv16842,essv21509,essv18758,essv11099,essv1455,essv20650,essv2099,essv20565,essv1167,essv18837,essv448,essv2842,essv22054,essv18109,essv2188,essv19537,essv7812,essv23597,essv1123,essv2277,essv10323,essv5278,essv13671 M 271 0 0 "" NA06991,NA06994,NA07048,NA07056,NA07348,NA10846,NA10856,NA10860,NA11829,NA11993,NA12005,NA12006,NA12043,NA12057,NA12144,NA12154,NA12156,NA12234,NA12740,NA12751,NA12801,NA12812,NA12814,NA12864,NA12872,NA12873,NA12874,NA12892,NA18506,NA18523,NA18524,NA18529,NA18558,NA18563,NA18611,NA18620,NA18621,NA18624,NA18632,NA18635,NA18636,NA18637,NA18852,NA18855,NA18856,NA18857,NA18872,NA18912,NA18942,NA18944,NA18949,NA18951,NA18952,NA18953,NA18960,NA18964,NA18966,NA18968,NA18972,NA18973,NA18978,NA18980,NA18981,NA18991,NA18994,NA18997,NA18998,NA19098,NA19099,NA19100,NA19101,NA19102,NA19119,NA19120,NA19127,NA19129,NA19130,NA19131,NA19132,NA19138,NA19139,NA19140,NA19141,NA19142,NA19144,NA19152,NA19153,NA19154,NA19171,NA19172,NA19173,NA19193,NA19194,NA19200,NA19203,NA19205,NA19206,NA19207,NA19210,NA19211,NA19239 dgv131e1 1 149285912 149711226 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv788,essv13889 M 271 0 0 "" NA18854 nsv524241 1 149297202 149301501 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700131 S 2026 0 1 "" nsv518413 1 149301501 149310758 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695848 S 2026 0 1 "" nsv526150 1 149310287 149310758 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702409 S 2026 0 1 "" dgv37n27 1 149323421 149366438 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv463872,nsv463861 M 1557 0 2 "" HGDP00999,HGDP01019 dgv38n27 1 149342905 149366438 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv463962,nsv463951,nsv463927,nsv463916,nsv463973,nsv463894,nsv463905,nsv463883,nsv463938 M 1557 0 9 "" HGDP00703,HGDP00706,HGDP00708,HGDP00837,HGDP00852,HGDP00865,HGDP00995,HGDP01058,HGDP01059 dgv39n27 1 149342905 149404215 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv463984,nsv464006,nsv463995 M 1557 0 3 "" HGDP00846,HGDP00868,HGDP00998 nsv516961 1 149343583 149366438 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv686060,nssv693224,nssv653515,nssv680007,nssv667208,nssv659830,nssv692439,nssv657450,nssv679487,nssv688607 M 2026 0 10 "" nsv2888 1 149345210 149433517 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5985,nssv11087,nssv9615,nssv1552,nssv10268,nssv2551,nssv9359,nssv3390 M 9 0 8 "" NA12878,NA15510,NA18507,NA18517,NA18555,NA18956,NA19129,NA19240 nsv437244 1 149350228 149396751 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467125 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18515 nsv68 1 149363029 149421545 CNV Loss Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv68 S 1 0 1 "" NA15510 esv33483 1 149363342 149588599 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98754,essv98704,essv97493,essv93810,essv93828,essv100764,essv96856,essv101042,essv95183,essv98300,essv98246,essv94795,essv94796,essv94137,essv94039,essv94316,essv94334,essv97006,essv97052,essv97887,essv95694,essv95697,essv95538,essv93005,essv95359,essv97429,essv95814,essv95790,essv99032,essv92884,essv92919,essv92668,essv92811,essv93692,essv93786,essv96115,essv96230,essv96211,essv96585,essv97146,essv97157,essv98542,essv99761,essv96046,essv96071,essv93477,essv93498,essv93406,essv93410,essv93265,essv93180,essv99645,essv94920,essv95019,essv95029,essv98042,essv98110,essv96541,essv96473,essv97723,essv100138,essv100196,essv100588,essv100466,essv100423,essv99409,essv98386,essv96298 M 51 39 4 "" 21606,21616,21634,21656,21659,21693,21721,21772,21791,21802,21808,21817,21837,21841,21847,21863,21872,21879,21911,21938,21939,21944,21972,22007,22011,22075,22085,22086,22127,22128,22170,22217,22231,22259,22261,22278,22286,22298,22300,22335,22352,22371 dgv2n31 1 149366001 149403347 CNV Deletion Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis nsv471493,nsv471494 M 3 "" nsv437245 1 149366438 149376857 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467126 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19129 nsv437247 1 149366438 149396751 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467128 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19240 nsv8402 1 149368105 149403547 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27290,nssv21087,nssv20410,nssv18448,nssv19751,nssv21084,nssv19435,nssv20735,nssv22413,nssv20405,nssv22741,nssv26169,nssv23069,nssv26173,nssv25465,nssv24288,nssv21076,nssv24579,nssv21412,nssv25948,nssv20754,nssv24894,nssv20079,nssv23994,nssv20746,nssv21772,nssv20740,nssv25944 M 31 8 10 Samples from several populations that are part of the HapMap project. "" NA07048,NA10839,NA10847,NA12155,NA12740,NA12802,NA12872,NA18504,NA18552,NA18563,NA18564,NA18942,NA18972,NA18975,NA18980,NA19132,NA19144,NA19173 nsv510990 1 149368113 149418276 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618600,nssv622426,nssv621656,nssv624364 M 4 0 0 "" CHM,NA10860,NA15510,NA18994 nsv438048 1 149368249 149396751 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv468763,nssv468396,nssv469075,nssv468463,nssv468908,nssv468785,nssv468385,nssv468607,nssv468641,nssv468452,nssv468408,nssv468563,nssv469086,nssv468685,nssv469119,nssv468363,nssv468875,nssv468541,nssv468886,nssv468341,nssv469063,nssv468840,nssv468997,nssv468774,nssv468274,nssv468986,nssv468741,nssv468807,nssv468829,nssv468297,nssv468941,nssv468752,nssv468507,nssv468864,nssv469019,nssv468919,nssv468718,nssv468930,nssv468964,nssv468319,nssv468530,nssv468519,nssv468674,nssv469030,nssv468897,nssv468707,nssv468729,nssv468618,nssv469097,nssv468308,nssv468574,nssv468430,nssv468330,nssv468419,nssv468263,nssv468696,nssv469108,nssv468952,nssv468853,nssv468496,nssv469008,nssv468374,nssv468975,nssv468285,nssv468485,nssv468474,nssv468552,nssv468630,nssv468585,nssv468596,nssv468796,nssv468441,nssv468818,nssv468663,nssv468652,nssv469052,nssv468352,nssv469041 M 269 0 49 Samples from several populations that are part of the HapMap project. "" NA06985,NA06991,NA06993,NA07019,NA07034,NA07048,NA07055,NA07056,NA10831,NA10846,NA10851,NA10856,NA10859,NA11829,NA11882,NA12057,NA12145,NA12155,NA12707,NA12717,NA12752,NA12753,NA12760,NA12761,NA12763,NA12878,NA12891,NA18500,NA18502,NA18503,NA18505,NA18515,NA18517,NA18912,NA18914,NA19119,NA19120,NA19128,NA19129,NA19143,NA19145,NA19160,NA19161,NA19200,NA19202,NA19207,NA19208,NA19238,NA19240 nsv441941 1 149368779 149399667 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv4n14 1 149374481 149396751 CNV Loss Cooper et al 2008 18776910 SNP_array nsv433478,nsv433467 M 9 0 2 "" NA15510,NA19129 nsv469873 1 149376333 149526689 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649894 M 265 0 0 Samples from several populations that are part of the HapMap project. "" nsv471350 1 149386281 149386564 CNV Deletion Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548046,nssv548047,nssv548044 M 3 "" nsv8413 1 149456400 149460055 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22436 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19007 nsv509480 1 149457517 149537228 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621104 S 4 1 0 "" NA15510 nsv8424 1 149461310 149472030 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19441 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19240 nsv2899 1 149461918 149470612 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1562 S 9 1 0 "" NA19240 nsv441715 1 149462185 149469615 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" esv34854 1 149484986 149569879 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6980446,essv6980447 M 771 1 0 "" NA19193 nsv818478 1 149485078 149547869 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418427 S 112 1 0 "" NA19193 essv16576 1 149495781 149552299 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19193 nsv508615 1 149537228 149600576 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618989,nssv622777 M 4 0 2 "" NA10860,NA18994 nsv79 1 149559508 149586671 CNV Loss Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv79 S 1 0 1 "" NA15510 nsv2910 1 149559508 149587487 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv11089,nssv3399 M 9 0 2 "" NA12878,NA15510 nsv8436 1 149572621 149583951 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21070,nssv22764,nssv22102,nssv22099,nssv21414,nssv21771,nssv21406,nssv25724,nssv21065,nssv20736,nssv19771,nssv20081,nssv19765,nssv21397,nssv21405,nssv21417,nssv26401,nssv25709,nssv18778,nssv25174,nssv27410 M 31 20 1 Samples from several populations that are part of the HapMap project. "" NA10847,NA10863,NA11830,NA12802,NA12872,NA18517,NA18537,NA18552,NA18564,NA18572,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19144,NA19173,NA19221,NA19240 dgv14n17 1 149572751 149586978 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437180,nsv437191 M 60 0 2 "" NA10851,NA10855 nsv438059 1 149574444 149582880 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv469186,nssv469208,nssv469174,nssv469141,nssv469241,nssv469130,nssv469152,nssv469230,nssv469219,nssv469163,nssv469197 M 269 0 10 Samples from several populations that are part of the HapMap project. "" NA07034,NA07048,NA10851,NA10855,NA10856,NA11829,NA11832,NA12057,NA19210,NA19211 nsv441973 1 149574996 149581773 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv433489 1 149577029 149579554 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463370 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA12878 nsv471351 1 149582300 149583730 CNV Deletion Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548048,nssv548049 M 3 "" nsv831592 1 149628127 149810235 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450651 S 95 1 0 "" nsv508038 1 149769561 149775561 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618509,nssv621479,nssv622296 M 4 0 3 "" CHM,NA10860,NA15510 nsv464017 1 149846479 149912418 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540020 S 1557 0 1 "" 1780854279_A nsv2921 1 149923997 149949407 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4685 S 9 1 0 "" NA19129 nsv2932 1 149958514 149992086 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3410 S 9 1 0 "" NA12878 nsv525937 1 150112447 150119840 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702143 S 2026 1 0 "" nsv7184 1 150116139 150154252 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10269 S 9 0 0 "" NA18956 nsv831603 1 150218915 150389216 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450662 S 95 1 0 "" esv33204 1 150223583 150232068 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99764 S 51 1 0 "" 22086 nsv464028 1 150435293 150536110 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540027 S 1557 1 0 "" 1780862424_A nsv441716 1 150486747 150506321 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv2943 1 150500733 150507137 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4696 S 9 1 0 "" NA19129 nsv515962 1 150565212 150586502 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv692910,nssv655021,nssv654683,nssv661377,nssv690230,nssv665486,nssv689445,nssv686798,nssv700310,nssv661360,nssv660164,nssv670770,nssv661817 M 2026 0 13 "" nsv520398 1 150881269 150954981 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv676401,nssv663691,nssv706092 M 2026 2 1 "" nsv2954 1 150980785 151015894 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1572 S 9 1 0 "" NA19240 nsv521887 1 151049643 151497179 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694658 S 2026 1 0 "" nsv523934 1 151109149 151120703 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699780 S 2026 0 1 "" nsv506960 1 151316456 151322456 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617541 S 4 1 0 "" CHM nsv160554 1 151324109 151326056 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv179132 M 24 "" nsv464050 1 151381756 151614320 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540042 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01370 esv32568 1 151401736 151403684 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99140,essv99372 M 51 0 2 "" 22275,22335 esv33703 1 151406428 151407003 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99928 S 51 0 1 "" 22086 esv33112 1 151408925 151409880 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100710,essv98223 M 51 2 0 "" 21656,21772 nsv464062 1 151443571 151482367 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540051 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00637 nsv522177 1 151475276 151482367 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694950 S 2026 0 1 "" nsv509491 1 151478188 151504858 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623795 S 4 1 0 "" NA18994 nsv2966 1 151645669 151678670 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7076 S 9 1 0 "" NA12156 nsv464073 1 151650869 151717913 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540061 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00857 nsv509502 1 151689956 151927840 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623798,nssv623796,nssv619815 M 4 2 0 "" NA10860,NA18994 nsv2977 1 151694126 151720686 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7688 S 9 0 1 "" NA12156 nsv524157 1 151840015 151843630 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700036 S 2026 0 1 "" nsv464084 1 151895371 152008053 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540072 S 1557 0 1 "" 1798860443_A dgv3n68 1 151908051 152126482 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH nsv831625,nsv831614 M 95 0 8 "" dgv132e1 1 151908051 152127880 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv9229,essv10088,essv15107,essv11564,esv173,essv17210 M 271 0 0 "" NA19128,NA19129,NA19130,NA19171,NA19173 nsv8447 1 151957702 151970010 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26574 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19221 nsv527682 1 151962791 152010535 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704158 S 2026 1 0 "" nsv2988 1 151967679 152002565 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1582,nssv4704 M 9 2 0 "" NA19129,NA19240 nsv8458 1 151993204 151997482 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25969 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19173 nsv8469 1 151997018 152017645 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26194 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19173 nsv441717 1 152002233 152014133 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv516159 1 152008053 152010535 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv666542,nssv671763 M 2026 2 0 "" nsv2999 1 152015028 152018159 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4714 S 9 1 0 "" NA19129 nsv8480 1 152019408 152027609 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26400 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19173 nsv831636 1 152032296 152257937 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450773,nssv1450762 M 95 0 2 "" esv33869 1 152036356 152731034 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98848,essv97456,essv101189,essv93940,essv100639,essv101068,essv95181,essv98314,essv98227,essv94841,essv94044,essv101285,essv97832,essv95733,essv95416,essv93009,essv95304,essv97450,essv101627,essv95865,essv94598,essv99061,essv92843,essv92675,essv96139,essv96651,essv97197,essv99966,essv95989,essv93442,essv93312,essv94986,essv92508,essv96490,essv99159,essv97768,essv100260,essv100553,essv98404 M 51 0 38 "" 21606,21616,21618,21634,21656,21693,21721,21772,21791,21802,21805,21837,21841,21847,21863,21872,21879,21909,21911,21932,21938,21939,21944,22007,22011,22075,22086,22127,22128,22170,22231,22233,22261,22275,22278,22286,22298,22352 nsv3010 1 152048878 152054752 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv11108 S 9 1 0 "" NA15510 nsv90 1 152048878 152054752 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv90 S 1 1 0 "" NA15510 nsv101 1 152057967 152061395 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv101 S 1 1 0 "" NA15510 nsv3021 1 152057967 152061395 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv11114 S 9 1 0 "" NA15510 nsv3032 1 152068483 152101049 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2561 S 9 1 0 "" NA18555 nsv3043 1 152387127 152421647 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1591 S 9 0 1 "" NA19240 nsv482134 1 152393080 152397830 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558495 S 1 1 0 "" KB1 nsv3054 1 152466908 152486582 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4721,nssv1601 M 9 0 2 "" NA19129,NA19240 nsv442072 1 152474300 152476430 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv3065 1 152495841 152540597 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7695 S 9 0 1 "" NA12156 nsv521958 1 152630861 152632730 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694727 S 2026 0 1 "" nsv509513 1 152715186 152961654 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623799,nssv623800 M 4 1 0 "" NA18994 nsv509524 1 153021138 153091301 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623801 S 4 1 0 "" NA18994 nsv3077 1 153323807 153343104 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7086,nssv4730 M 9 0 2 "" NA12156,NA19129 nsv523181 1 153363327 153489626 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698894 S 2026 0 1 "" nsv521401 1 153407729 153428267 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694442 S 2026 0 1 "" nsv521552 1 153426590 153428267 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698167 S 2026 0 1 "" nsv831648 1 153476950 153694991 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450784,nssv1450795 M 95 0 2 "" nsv3088 1 153493697 153504125 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7706 S 9 1 0 "" NA12156 nsv831659 1 153554024 153763069 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450806 S 95 0 1 "" nsv3099 1 153724533 153744944 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1611 S 9 1 0 "" NA19240 nsv3110 1 153760192 153804295 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3146,nssv3417 M 9 2 0 "" NA12878,NA18555 nsv3121 1 153899797 153911907 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7715 S 9 0 1 "" NA12156 nsv464095 1 154043342 154173825 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540081 S 1557 1 0 "" 1780854341_A nsv831670 1 154085672 154279817 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450817 S 95 0 1 "" nsv3132 1 154149042 154162259 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7724 S 9 0 1 "" NA12156 nsv524895 1 154180252 154182506 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700901 S 2026 0 1 "" nsv528914 1 154180252 154200009 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705600 S 2026 0 1 "" nsv520860 1 154182275 154182506 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697654 S 2026 0 1 "" nsv831681 1 154207911 154310585 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450839,nssv1450828 M 95 1 1 "" nsv3143 1 154329932 154335289 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1618 S 9 1 0 "" NA19240 nsv3154 1 154344909 154379615 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3426 S 9 1 0 "" NA12878 nsv508039 1 154403179 154409179 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624219,nssv622297,nssv621480,nssv618510 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv527949 1 154424507 154433216 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704458 S 2026 0 1 "" nsv520011 1 154461171 154486701 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697176 S 2026 0 1 "" nsv508040 1 154699300 154705300 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624220 S 4 0 1 "" NA18994 nsv3165 1 154715647 154749727 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2569,nssv7729 M 9 2 0 "" NA12156,NA18555 nsv523208 1 154835290 154901760 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698928 S 2026 1 0 "" nsv526592 1 154837572 154839612 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702911 S 2026 0 1 "" nsv508626 1 154975005 155055231 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622778 S 4 0 1 "" NA18994 nsv527619 1 154981636 154983619 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704085 S 2026 0 1 "" nsv831692 1 155036532 155205089 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450862,nssv1450851 M 95 2 0 "" nsv515666 1 155037898 155050135 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv659323,nssv664298,nssv660921,nssv665215 M 2026 0 4 "" nsv523252 1 155108082 155108702 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698981 S 2026 0 1 "" nsv437202 1 155297451 155306227 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467083 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA10835 nsv438070 1 155303018 155303524 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv469263,nssv469252 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA10835,NA12249 nsv515658 1 155303018 155303524 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv676710,nssv657910,nssv690975,nssv666360,nssv672124,nssv671739,nssv664271,nssv670626 M 2026 0 8 "" dgv15n17 1 155324518 155337509 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437248,nsv437250,nsv437249 M 60 0 3 "" NA19103,NA19202,NA19208 nsv442095 1 155330069 155333490 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv40n27 1 155330426 155334465 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv464117,nsv464128 M 1557 0 2 "" HGDP00467,HGDP00479 nsv515774 1 155330426 155334465 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv661057,nssv657291,nssv662523,nssv657768,nssv658814,nssv685281,nssv656382,nssv675221,nssv668037,nssv653201,nssv653320,nssv662802,nssv682898,nssv690060,nssv668164,nssv673661,nssv665816,nssv686592,nssv687858,nssv665854,nssv673173,nssv688513,nssv693812,nssv689056,nssv673767,nssv670410,nssv669489,nssv686215,nssv658359,nssv652086,nssv681388,nssv688038,nssv690472,nssv677418,nssv667134,nssv691244,nssv665984,nssv658243,nssv666508,nssv657961,nssv684385 M 2026 0 41 "" nsv464139 1 155333278 155334107 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540112 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00914 nsv438082 1 155333810 155334465 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv469274,nssv469285,nssv469297,nssv469308 M 269 0 4 Samples from several populations that are part of the HapMap project. "" NA19102,NA19103,NA19207,NA19208 dgv4n6 1 155680604 155683057 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv159081,nsv159728 M 24 "" nsv525964 1 155714200 155715417 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702177 S 2026 0 1 "" nsv518819 1 155714200 155716325 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696272 S 2026 0 1 "" nsv3176 1 155768446 155799641 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3433 S 9 0 1 "" NA12878 esv32912 1 155793912 155794640 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100842 S 51 0 1 "" 21656 nsv506961 1 155816049 155822049 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617542,nssv620668,nssv619251 M 4 3 0 "" CHM,NA10860,NA15510 esv33390 1 155817647 155817899 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv96453 S 51 1 0 "" 22261 esv33763 1 155820634 155821001 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv96513 S 51 0 1 "" 22261 nsv523257 1 156394460 156395291 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698987 S 2026 0 1 "" nsv522601 1 156426871 156429702 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705992 S 2026 0 1 "" nsv3188 1 156448205 156489255 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7732 S 9 0 1 "" NA12156 nsv160520 1 156461781 156462730 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv179098 M 24 "" esv33491 1 156561597 156561925 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv92780 S 51 1 0 "" 21944 nsv521503 1 156575193 156608551 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698120 S 2026 0 1 "" nsv464150 1 156673990 156721466 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540120 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00473 nsv524006 1 156699495 156736184 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699866 S 2026 1 0 "" nsv516637 1 156702759 156721466 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv669784,nssv655349,nssv703037 M 2026 0 3 "" nsv520773 1 156736032 156748642 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv679916,nssv675248,nssv698947 M 2026 0 3 "" nsv159498 1 156759825 156759876 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178076 M 24 "" nsv3199 1 156815969 156847368 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4748 S 9 1 0 "" NA19129 nsv520189 1 156824585 156908698 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705109,nssv688598,nssv661554 M 2026 0 3 "" nsv508041 1 156855454 156861454 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621481,nssv624221 M 4 0 2 "" NA15510,NA18994 nsv520399 1 156936854 156937948 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697393 S 2026 0 1 "" nsv522918 1 156936854 156963203 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698579 S 2026 0 1 "" nsv3210 1 157035914 157080893 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4759 S 9 0 1 "" NA19129 nsv831703 1 157309197 157456097 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450873 S 95 1 0 "" nsv831714 1 157394241 157589882 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450884 S 95 1 0 "" nsv511001 1 157444230 157481672 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624365,nssv622427,nssv621657 M 4 0 0 "" NA10860,NA15510,NA18994 nsv506962 1 157456339 157462339 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617543 S 4 1 0 "" CHM nsv437213 1 157465803 157494909 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467094 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA12707 nsv508042 1 157466021 157472021 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618511 S 4 0 1 "" CHM nsv3221 1 157821248 157866052 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7736 S 9 0 1 "" NA12156 nsv3232 1 157830906 157833153 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2693 S 9 1 0 "" NA18555 esv32799 1 157974911 157984593 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98925 S 51 1 0 "" 21606 nsv482136 1 157998160 158002111 CNV Loss Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558497 S 1 0 1 "" KB1 nsv523318 1 158045845 158047956 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699060 S 2026 0 1 "" nsv520253 1 158047696 158050965 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697309 S 2026 0 1 "" nsv525443 1 158076453 158087384 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701571 S 2026 0 1 "" nsv517826 1 158076453 158090674 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695231 S 2026 1 0 "" dgv133e1 1 158157328 158413210 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv623,esv804 M 271 0 0 "" NA18998 nsv3243 1 158204508 158289948 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1635,nssv10294,nssv10301,nssv4777 M 9 0 3 "" NA18956,NA19129,NA19240 nsv509535 1 158210297 158284152 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621105,nssv623802,nssv619817 M 4 3 0 "" NA10860,NA15510,NA18994 nsv3254 1 158210955 158226156 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7097,nssv10296,nssv4769 M 9 3 0 "" NA12156,NA18956,NA19129 dgv4n68 1 158216103 158398390 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH nsv831736,nsv831725 M 95 3 2 "" dgv134e1 1 158219386 158356094 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv18223,essv10477,essv11983,essv11103,essv1272,essv17626,essv7196,essv15853,essv16874,essv17813,essv8113,essv11916,essv4427,essv15042,essv15421,essv9341,essv6135,essv20064,essv3062,essv5158,essv16539,essv11683,essv19431,essv4254,essv14778,essv23331,essv17001,essv8308,essv13149,essv22505,essv10647,essv10382,essv11430,essv8368,essv24071,essv25008,essv14065,essv17557,essv19576,essv24898,essv15673,essv18299,essv17275,essv9697,essv12766,essv6976,essv5100,essv18997,essv2094,essv16057,essv10931,essv21054,essv11780,essv12247,essv4022 M 271 0 0 "" NA06991,NA06994,NA07048,NA10831,NA10839,NA10846,NA10859,NA11840,NA11882,NA12005,NA12057,NA12750,NA12753,NA12762,NA12864,NA18501,NA18502,NA18503,NA18504,NA18515,NA18517,NA18532,NA18547,NA18564,NA18573,NA18577,NA18582,NA18603,NA18853,NA18855,NA18857,NA18858,NA18861,NA18912,NA18913,NA18914,NA18949,NA18970,NA18981,NA18995,NA19101,NA19102,NA19103,NA19129,NA19144,NA19154,NA19159,NA19203,NA19205,NA19206,NA19209,NA19210,NA19211,NA19222,NA19223 nsv8491 1 158223552 158265311 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25713,nssv22111,nssv20411,nssv22760,nssv21766,nssv27632,nssv22429,nssv27840,nssv21071,nssv21091,nssv23078,nssv22432,nssv23379,nssv22434,nssv21781,nssv20101,nssv23678,nssv23388,nssv27740,nssv22104,nssv21777,nssv22441,nssv24563,nssv20761,nssv20741,nssv20431,nssv24273,nssv25454,nssv21421,nssv27522,nssv22762,nssv23979,nssv21401,nssv21774 M 31 4 8 Samples from several populations that are part of the HapMap project. "" NA07029,NA12872,NA18504,NA18552,NA18564,NA18572,NA18942,NA18972,NA18975,NA19132,NA19240 nsv3265 1 158228002 158250603 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2587,nssv1628,nssv3453 M 9 3 0 "" NA12878,NA18555,NA19240 dgv8e55 1 158276553 158405340 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv2750814,esv2750812,esv2750813 M 771 3 0 "" BEC_408,BEC_425,BEC_531 dgv135e1 1 158276869 158413210 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv4308,essv19866,essv3445,essv25032,essv15161,essv10615,essv5862 M 271 0 0 "" NA12234,NA12801,NA18555,NA18564,NA18956,NA19210,NA19211 dgv136e1 1 158278475 158375651 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv20987,essv20462,essv6057 M 271 0 0 "" NA06994,NA10863,NA18603 nsv482137 1 158288260 158302414 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558498 S 1 1 0 "" KB1 nsv8502 1 158290403 158378217 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20409,nssv22101,nssv21757,nssv23689,nssv22769,nssv19108,nssv26379,nssv26873,nssv26375,nssv22096,nssv24878,nssv26573,nssv26733,nssv25954,nssv25958,nssv19430,nssv20095 M 31 0 16 Samples from several populations that are part of the HapMap project. "" NA07029,NA10839,NA11830,NA12155,NA12740,NA18504,NA18517,NA18552,NA18564,NA18853,NA18860,NA18980,NA19144,NA19173,NA19221,NA19240 esv33393 1 158291736 158811985 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101513,essv98751,essv97486,essv101107,essv93879,essv100802,essv98210,essv94830,essv101296,essv94360,essv96932,essv97924,essv95539,essv95371,essv97445,essv95901,essv98979,essv92935,essv93746,essv96235,essv96700,essv97190,essv98620,essv99774,essv95959,essv93541,essv93182,essv99626,essv95013,essv92656,essv96426,essv99230,essv100269,essv99411,essv98446 M 51 1 34 "" 21603,21606,21616,21618,21634,21656,21772,21791,21805,21808,21817,21837,21847,21872,21879,21911,21938,21939,21972,22007,22011,22075,22085,22086,22127,22128,22170,22217,22231,22233,22261,22275,22286,22335,22352 dgv17n21 1 158292800 158313185 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv523906,nsv526950 M 2026 0 2 "" nsv519779 1 158292800 158370058 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697045 S 2026 0 1 "" nsv464173 1 158292800 158378474 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540130 S 1557 1 0 "" 1780854525_A nsv818489 1 158308095 158378491 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417711 S 112 1 0 "" NA18999 nsv517640 1 158308095 158394142 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv652754,nssv679036,nssv677518,nssv686593,nssv677351,nssv693456,nssv671510,nssv672481,nssv686629,nssv678767,nssv666844,nssv654186,nssv693890,nssv677746,nssv698834 M 2026 7 8 "" dgv137e1 1 158310272 158375651 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv5783,essv8693,essv15942,essv14942,essv24352,essv23302,essv6096,essv24324,essv23720,essv22791,essv13501,essv17988,essv13817,essv3254 M 271 0 0 "" NA10839,NA11882,NA12005,NA12264,NA12753,NA12813,NA18515,NA18540,NA18573,NA18853,NA18912,NA18914,NA18967,NA19132 dgv138e1 1 158310272 158413210 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2363,essv12956,essv8562,essv13240,essv5007,essv20874,essv19311,essv24647,essv19379,essv18558,essv2565 M 271 0 0 "" NA07019,NA07022,NA10846,NA10851,NA12145,NA18503,NA18571,NA18974,NA18995,NA19102,NA19131 nsv159576 1 158314366 158316001 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178154 M 24 "" essv6858 1 158321818 158349210 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18558 dgv139e1 1 158321818 158375651 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv929,essv3577,essv4108,essv19737,essv3508,essv7922,essv9543,essv7633,essv6439,essv22275,essv5641,essv3903 M 271 0 0 "" NA10859,NA12762,NA18529,NA18547,NA18579,NA18592,NA18861,NA18949,NA18960,NA18987,NA18999,NA19209 nsv818500 1 158324148 158349210 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415735 S 112 1 0 "" NA12875 nsv442209 1 158324465 158371226 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv1n39 1 158324606 158333468 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis nsv482138,nsv482139 M 1 1 0 "" KB1 nsv509546 1 158325887 158386089 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617996,nssv619818,nssv623804,nssv621106 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv159772 1 158328425 158328500 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178350 M 24 "" nsv821621 1 158336284 158368514 CNV Loss Sebat_et_al_2004 15273396 ROMA Custom Nimblegen photoprint 85000 probe ROMA oligo array nssv1421202,nssv1421213 M 31 0 2 "" dgv140e1 1 158349191 158375651 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv8043,essv25099 M 271 0 0 "" NA12814,NA19103 nsv437224 1 158352551 158370202 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467105 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA12752 nsv482140 1 158364613 158375530 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558501 S 1 1 0 "" KB1 nsv464184 1 158378474 158617010 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540137 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00864 nsv524449 1 158412526 158413438 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700382 S 2026 0 1 "" nsv516773 1 158423091 158434421 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv679635,nssv670750 M 2026 2 0 "" nsv464195 1 158424661 158434450 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540144 S 1557 0 1 "" 1780854158_A nsv527196 1 158434676 158434856 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703594 S 2026 0 1 "" nsv464206 1 158529897 158799105 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540152 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00458 nsv3276 1 158537103 158558929 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4786 S 9 1 0 "" NA19129 nsv831747 1 158658025 158834969 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450950,nssv1451028,nssv1450984,nssv1450973,nssv1451039,nssv1451017,nssv1450995,nssv1450962,nssv1451006 M 95 0 9 "" nsv160321 1 158666577 158666983 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178899 M 24 "" nsv3287 1 158695449 158728811 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1645 S 9 1 0 "" NA19240 nsv158962 1 158784324 158784643 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv177540 M 24 "" essv5883 1 158796126 159091666 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18576 dgv141e1 1 158796126 159235014 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv5032,esv504 M 271 0 0 "" NA18576 nsv831759 1 158805614 158910540 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451061,nssv1451050 M 95 1 1 "" nsv818511 1 158808179 159077476 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417235 S 112 1 0 "" NA18576 esv34209 1 158820989 159108974 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6986899,essv6990384,essv6979587,essv6979588,essv6979589 M 771 1 0 "" NA18576 nsv516482 1 158839777 159606853 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697575,nssv705937,nssv696338,nssv654684,nssv654585,nssv696690,nssv705301,nssv678768,nssv702375,nssv668654,nssv662445,nssv673362 M 2026 4 8 "" esv34749 1 158872000 158915451 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6986751,essv6978960 M 771 1 0 "" NA12812 dgv142e1 1 158880358 158925396 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv25027,essv19155 M 271 0 0 "" NA12801,NA12812 nsv818522 1 158887644 158905053 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416024 S 112 1 0 "" NA12812 dgv41n27 1 158887644 158910805 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv464228,nsv464217 M 1557 2 0 "" 1780854101_A,NINDS_57 nsv818533 1 158900926 158905053 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416025 S 112 1 0 "" NA12801 nsv8513 1 159083104 159086403 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22087,nssv22431,nssv26552,nssv23080,nssv23087 M 31 5 0 Samples from several populations that are part of the HapMap project. "" NA11830,NA12155,NA18860,NA18975,NA19240 nsv159160 1 159208826 159210492 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv177738 M 24 "" nsv3299 1 159381279 159399154 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10310 S 9 1 0 "" NA18956 nsv3310 1 159519113 159554523 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3464 S 9 1 0 "" NA12878 nsv437251 1 159596134 159625974 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467132 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19129 nsv437252 1 159605183 159625974 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467133 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19132 nsv519874 1 159608815 159614574 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697098 S 2026 1 0 "" nsv516898 1 159618433 159624934 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv674520,nssv690262,nssv680688,nssv692739,nssv673701,nssv704813,nssv694279,nssv654745,nssv692911,nssv695540,nssv679886 M 2026 2 9 "" nsv437254 1 159619646 159625974 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467135 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18872 nsv437253 1 159619646 159632021 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467134 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18506 nsv438093 1 159624305 159624934 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv469385,nssv469319,nssv469341,nssv469330,nssv469430,nssv469363,nssv469452,nssv469374,nssv469352,nssv469396,nssv469419,nssv469408,nssv469463,nssv469441 M 269 0 14 Samples from several populations that are part of the HapMap project. "" NA12740,NA12751,NA18506,NA18508,NA18871,NA18872,NA19116,NA19120,NA19127,NA19129,NA19131,NA19132,NA19238,NA19240 nsv522470 1 159628153 159632021 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705834 S 2026 0 1 "" nsv3321 1 159668233 159701698 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3474 S 9 1 0 "" NA12878 nsv3332 1 159774630 159806636 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3484 S 9 1 0 "" NA12878 nsv160306 1 160039707 160046089 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178884 M 24 "" nsv831770 1 160072071 160240338 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451073 S 95 0 1 "" nsv523372 1 160138212 160153978 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699121 S 2026 0 1 "" nsv524883 1 160188619 160189103 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700889 S 2026 0 1 "" nsv3343 1 160352397 160391482 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2597,nssv4795 M 9 2 0 "" NA18555,NA19129 nsv522442 1 160447468 160496930 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705800 S 2026 0 1 "" nsv831781 1 160633914 160795493 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451084,nssv1451095,nssv1451106 M 95 3 0 "" nsv520400 1 160969260 160995468 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv663692,nssv692863 M 2026 2 0 "" nsv437235 1 160980778 161178837 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467116 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA10857 nsv3354 1 161027682 161062157 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3493 S 9 1 0 "" NA12878 nsv516000 1 161112614 161120249 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv674293,nssv665656,nssv670411 M 2026 0 3 "" nsv524999 1 161117348 161127506 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701030 S 2026 0 1 "" nsv831792 1 161178527 161360157 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451128,nssv1451117 M 95 1 1 "" nsv3365 1 161870840 161894850 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1662 S 9 1 0 "" NA19240 nsv506963 1 162064374 162070374 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619252 S 4 1 0 "" NA10860 dgv143e1 1 162149184 162157194 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1100,essv14008 M 271 0 0 "" NA19222 nsv8524 1 162152935 162156632 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27037 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19221 nsv441718 1 162153532 162155828 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv144e1 1 162153963 162157194 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv15940,essv10185 M 271 0 0 "" NA18515,NA18516 nsv3376 1 162214780 162249481 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1671 S 9 1 0 "" NA19240 nsv3387 1 162273828 162291036 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7755 S 9 1 0 "" NA12156 esv33662 1 162363666 162363697 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93377 S 51 1 0 "" 22170 esv33411 1 162380567 162380981 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101243,essv95198,essv94816,essv96957,essv97340,essv94593,essv96116,essv96637,essv96004,essv93524,essv93283,essv96497,essv99235,essv100130,essv94299 M 51 0 15 "" 21618,21721,21791,21817,21879,21932,22007,22011,22127,22128,22170,22261,22275,22286,22394 esv33567 1 162380567 162382105 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98585,essv99455 M 51 0 2 "" 22085,22335 nsv518886 1 162445845 162473304 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696345 S 2026 1 0 "" nsv159176 1 162462904 162463183 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv177754 M 24 "" nsv517792 1 162517161 162543387 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv690750,nssv653274 M 2026 0 2 "" nsv818544 1 162529624 162543387 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417712 S 112 1 0 "" NA18999 nsv437246 1 162554549 162592471 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467127 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA12753 nsv520206 1 162635620 162645432 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv661788,nssv698363,nssv704968,nssv692343 M 2026 0 4 "" nsv159546 1 162893362 162893362 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178124 M 24 "" nsv3398 1 162907213 162922835 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9374,nssv4806 M 9 2 0 "" NA18517,NA19129 nsv442271 1 162916139 162926028 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv517576 1 162918125 162923335 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv652416,nssv660817 M 2026 2 0 "" dgv18n21 1 162988489 162995901 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv529043,nsv525333 M 2026 0 2 "" nsv519423 1 163007658 163029509 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696845 S 2026 0 1 "" nsv527245 1 163049472 163049885 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703647 S 2026 0 1 "" dgv145e1 1 163223537 163382643 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv4558,esv700 M 271 0 0 "" NA18524 essv5848 1 163275200 163333436 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18524 esv34401 1 163278000 163349259 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6979291,essv6979290,essv6988144,essv6989081 M 771 0 1 "" NA18524 essv5010 1 163304911 163332444 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18571 nsv519275 1 163490200 163498708 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv655163,nssv673387,nssv691052,nssv689533,nssv661096,nssv698745,nssv671803 M 2026 0 7 "" esv2750815 1 163685524 163912000 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6986157,essv6982401,essv6982400,essv6982399,essv6988531 M 771 1 0 "" BEC_437 nsv528049 1 163735197 163741741 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704581 S 2026 0 1 "" nsv519114 1 163735197 163746842 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696590 S 2026 1 0 "" nsv3410 1 163830484 163861846 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv11119 S 9 1 0 "" NA15510 nsv509557 1 163865831 163911699 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617997,nssv623805,nssv621107,nssv619819 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv521232 1 163892617 164089219 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698681,nssv686755,nssv688320 M 2026 2 1 "" nsv3421 1 163895419 163925024 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9886,nssv7762,nssv10331,nssv3501,nssv2704 M 9 5 0 "" NA12156,NA12878,NA18507,NA18555,NA18956 nsv831803 1 163916375 164097435 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451139 S 95 0 1 "" nsv831814 1 164081492 164291869 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451150 S 95 0 1 "" nsv3432 1 164119761 164153535 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7770 S 9 1 0 "" NA12156 nsv528248 1 164139731 164163515 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704814 S 2026 0 1 "" nsv528710 1 164169611 164301388 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705360 S 2026 1 0 "" nsv528380 1 164202475 164207529 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704969 S 2026 0 1 "" nsv161050 1 164236983 164237752 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv179628 M 24 "" nsv523174 1 164491823 164496583 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698886 S 2026 0 1 "" esv32660 1 164526741 164921882 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93891,essv100902,essv92865,essv99942,essv92600 M 51 0 5 "" 21634,21656,21939,22086,22233 nsv527119 1 164551187 164553871 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703502 S 2026 0 1 "" nsv464239 1 164557143 164608274 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540184 S 1557 0 1 "" 1780854016_A nsv506964 1 164780324 164786324 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620670 S 4 1 0 "" NA15510 nsv441719 1 164820773 164823072 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv831825 1 164910833 165084720 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451161,nssv1451184,nssv1451172 M 95 2 1 "" nsv818556 1 165069727 165075007 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417967 S 112 0 1 "" NA07357 nsv527576 1 165072925 165073524 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704037 S 2026 0 1 "" nsv506965 1 165150781 165156781 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620671,nssv623286 M 4 2 0 "" NA15510,NA18994 esv32664 1 165190230 165190939 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97969 S 51 0 1 "" 21837 nsv831836 1 165270437 165448614 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451195,nssv1451206 M 95 1 1 "" nsv3443 1 165309240 165353963 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7779 S 9 0 1 "" NA12156 nsv525556 1 165385515 165394010 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701695 S 2026 1 0 "" nsv831847 1 165401535 165581787 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451217 S 95 1 0 "" nsv464250 1 165504051 165557690 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540194 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00251 nsv528885 1 165552406 165557690 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705566 S 2026 0 1 "" nsv437258 1 165555769 165622078 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467139 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA07348 nsv508043 1 165589801 165595801 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618512 S 4 0 1 "" CHM esv33957 1 165736233 165736768 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101181,essv95195,essv97876,essv95391,essv97292,essv101676,essv96190,essv96641,essv93445,essv93413,essv94917 M 51 0 11 "" 21618,21721,21837,21872,21879,21909,22007,22011,22128,22170,22231 nsv831858 1 165754041 165910726 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451228 S 95 1 0 "" nsv160013 1 165790642 165790642 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178591 M 24 "" nsv525520 1 165923518 165971742 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701653 S 2026 0 1 "" nsv508044 1 165927993 165933993 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624222,nssv622298 M 4 0 2 "" NA10860,NA18994 nsv508637 1 165946578 165999736 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618990 S 4 0 1 "" NA10860 esv32640 1 165958831 165972945 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101129,essv93901,essv100688,essv96792,essv101049,essv95107,essv94069,essv94327,essv97041,essv97793,essv95390,essv94482,essv92687,essv96593,essv97081,essv98618,essv99976,essv96000,essv93277,essv94861,essv92535,essv96508,essv100551,essv100330,essv99505,essv96347,essv94161 M 51 19 8 "" 21618,21634,21656,21659,21693,21721,21802,21808,21817,21837,21872,21932,21944,22011,22075,22085,22086,22127,22170,22231,22233,22261,22298,22300,22335,22371,22394 dgv42n27 1 165960802 165971742 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv465016,nsv464728,nsv464894,nsv464805,nsv464461,nsv464905,nsv464383,nsv465206,nsv465195,nsv464938,nsv465005,nsv465395,nsv465350,nsv465261,nsv464839,nsv464439,nsv465372,nsv465317,nsv465439,nsv465517,nsv464661,nsv465250,nsv464395,nsv464816,nsv465062,nsv465038,nsv464450,nsv464306,nsv465572,nsv464528,nsv465161,nsv465483,nsv464716,nsv465272,nsv465339,nsv464994,nsv464295,nsv465406,nsv464428,nsv465228,nsv464350,nsv464417,nsv464983,nsv464872,nsv464694,nsv465550,nsv464605,nsv465328,nsv464539,nsv464506,nsv465239,nsv465528,nsv465450,nsv464572,nsv465073,nsv464372,nsv464361,nsv465472,nsv465084,nsv464650,nsv465217,nsv464594,nsv465561,nsv464472,nsv465284,nsv465617,nsv464739,nsv464517,nsv464261,nsv464583,nsv465583,nsv464961,nsv464705,nsv465428,nsv464772,nsv465049,nsv465027,nsv464284,nsv465117,nsv464850,nsv464639,nsv465383,nsv465295,nsv465494,nsv465506,nsv465184,nsv464883,nsv465139,nsv464950,nsv465150,nsv464794,nsv465106,nsv465306,nsv464972,nsv465095,nsv464683,nsv464317,nsv464406,nsv465539,nsv464761,nsv465173,nsv464328,nsv465417,nsv464927,nsv464339,nsv464628,nsv465361,nsv464561,nsv465605,nsv464861,nsv464783,nsv464672,nsv464827,nsv464750,nsv464483,nsv464550,nsv464494,nsv464617,nsv464272,nsv465461,nsv465128,nsv465594,nsv464916 M 1557 0 123 "" 1780846004_A,1780854130_A,1780854293_A,1780854295_A,1780854326_A,1780854328_A,1780854401_A,1780854437_A,1780854467_A,1780854487_A,1780854496_A,1780854537_A,1780854556_A,1780854573_A,1780862123_A,1780862165_A,1780862225_A,1780862301_A,1780862347_A,1780862366_A,1780862372_A,1780862386_A,1780862388_A,1780862390_A,1780862452_A,1780862480_A,1780862516_A,1780862532_A,1780862575_A,1780862584_A,1782681109_A,1782681117_A,1782681210_A,1782681275_A,1782681329_A,1787431197_A,1788485589_A,1798860186_A,1798860292_A,1798860336_A,1798860491_A,1798860570_A,HGDP00064,HGDP00074,HGDP00234,HGDP00281,HGDP00304,HGDP00313,HGDP00514,HGDP00518,HGDP00521,HGDP00524,HGDP00534,HGDP00561,HGDP00578,HGDP00591,HGDP00612,HGDP00618,HGDP00662,HGDP00663,HGDP00669,HGDP00670,HGDP00686,HGDP00714,HGDP00729,HGDP00731,HGDP00746,HGDP00769,HGDP00777,HGDP00779,HGDP00786,HGDP00808,HGDP00891,HGDP01063,HGDP01064,HGDP01069,HGDP01077,HGDP01166,HGDP01171,HGDP01256,HGDP01257,HGDP01360,HGDP01362,HGDP01369,HGDP01372,HGDP01378,HGDP01383,HGDP01386,NINDS_105,NINDS_109,NINDS_112,NINDS_117,NINDS_123,NINDS_127,NINDS_13,NINDS_149,NINDS_158,NINDS_159,NINDS_16,NINDS_190,NINDS_194,NINDS_199,NINDS_206,NINDS_208,NINDS_209,NINDS_213,NINDS_215,NINDS_218,NINDS_222,NINDS_227,NINDS_236,NINDS_258,NINDS_29,NINDS_33,NINDS_37,NINDS_43,NINDS_45,NINDS_57,NINDS_60,NINDS_64,NINDS_71,NINDS_91,NINDS_95 nsv515530 1 165960802 165971742 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv668397,nssv679369,nssv683098,nssv682635,nssv675687,nssv666711,nssv664801,nssv675864,nssv671073,nssv685021,nssv691709,nssv677316,nssv685015,nssv682251,nssv655704,nssv685975,nssv662726,nssv689716,nssv668751,nssv671537,nssv654514,nssv660860,nssv702513,nssv692463,nssv655254,nssv686412,nssv677710,nssv691816,nssv690231,nssv656506,nssv688735,nssv652003,nssv653713,nssv675880,nssv688389,nssv666687,nssv674451,nssv657016,nssv685413,nssv678769,nssv662743,nssv687356,nssv659238,nssv688541,nssv682162,nssv670901,nssv691790,nssv686126,nssv658989,nssv668119,nssv654600,nssv652738,nssv689446,nssv686970,nssv661395,nssv651820,nssv659863,nssv684963,nssv659652,nssv687120,nssv652417,nssv663346,nssv669005,nssv676440,nssv667193,nssv681591,nssv684538,nssv667019,nssv677293,nssv682621,nssv676802,nssv684497,nssv656992,nssv663826,nssv667672,nssv673234,nssv679182,nssv660505,nssv657178,nssv655850,nssv652882,nssv676334,nssv661555,nssv672694,nssv689837,nssv689120,nssv691958,nssv663101,nssv687066,nssv677976,nssv688599,nssv680871,nssv687658,nssv687746,nssv685612,nssv677803,nssv691053,nssv655164,nssv678580,nssv669058,nssv669575,nssv658162,nssv656110,nssv684588,nssv653743,nssv683529,nssv693003,nssv651666,nssv670336,nssv693250,nssv686286,nssv664097,nssv666730,nssv673120,nssv689998,nssv672942,nssv681184,nssv663036,nssv687712,nssv684989,nssv660749,nssv654839,nssv652787,nssv660983,nssv652611,nssv657678,nssv680831,nssv659122,nssv687859,nssv671164,nssv678312,nssv687737,nssv652390,nssv677209,nssv669525,nssv660237,nssv652702,nssv688949,nssv693674,nssv674729,nssv685138,nssv693539,nssv652232,nssv674267,nssv653613,nssv665075,nssv662672,nssv692185,nssv683770,nssv678344,nssv689644,nssv672222,nssv656157,nssv653915,nssv663636,nssv679607,nssv676836,nssv687239,nssv682833,nssv666960,nssv652211,nssv664518,nssv660448,nssv668238,nssv663917,nssv680224,nssv653106,nssv684189,nssv665511,nssv684061,nssv667834,nssv678548,nssv655822,nssv659046,nssv684813,nssv690993,nssv685595,nssv675012,nssv678630,nssv693592,nssv688807,nssv684663,nssv666310,nssv668769,nssv690695,nssv660950,nssv670194,nssv668799,nssv661117,nssv672435,nssv676137,nssv667541,nssv682013,nssv653421,nssv651689,nssv676889,nssv658086,nssv655494,nssv658782,nssv683254,nssv679936,nssv674737,nssv689882,nssv665284,nssv668434,nssv663367,nssv668342,nssv675853,nssv655835,nssv673629,nssv666581,nssv677419,nssv664212,nssv683457,nssv652058,nssv671886,nssv663142,nssv657228,nssv657856,nssv663534,nssv652501,nssv675399,nssv670358,nssv660726,nssv691615,nssv652975,nssv666090,nssv671823,nssv665681,nssv666245,nssv672841,nssv664602,nssv683733,nssv689086,nssv657522,nssv673106,nssv666985,nssv657649,nssv693179,nssv664496,nssv682310,nssv676368,nssv661647,nssv680547,nssv684517,nssv675485 M 2026 3 243 "" nsv818567 1 165960802 165971742 CNV Gain+Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417000,nssv1416516,nssv1418530,nssv1416218,nssv1416526,nssv1417817,nssv1418103,nssv1415738,nssv1415935,nssv1418529,nssv1418214,nssv1417818,nssv1416999,nssv1416027,nssv1416528,nssv1416525,nssv1417222,nssv1418042,nssv1415736,nssv1418341,nssv1418531,nssv1417139,nssv1417150,nssv1417409,nssv1417128,nssv1416505,nssv1416026,nssv1416121,nssv1415934,nssv1415737,nssv1418342,nssv1416122,nssv1416219 M 112 6 27 "" NA06985,NA06991,NA07000,NA07029,NA10830,NA10851,NA10857,NA10863,NA11881,NA12044,NA12057,NA12146,NA12154,NA12234,NA12236,NA12239,NA12264,NA12740,NA12751,NA12812,NA12813,NA12865,NA12874,NA12875,NA12891,NA12892,NA18576,NA18853,NA18854,NA18951,NA19171,NA19172,NA19173 nsv442352 1 165965632 165973424 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" esv33347 1 166049434 166049705 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93884,essv95151,essv94552 M 51 0 3 "" 21634,21721,21932 nsv831871 1 166052331 166218338 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451239 S 95 0 1 "" nsv159064 1 166056152 166056152 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv177642 M 24 "" nsv517483 1 166308226 166312916 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv652156,nssv687920,nssv664245,nssv659831,nssv682474,nssv693364 M 2026 0 6 "" nsv159209 1 166339376 166345047 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv177787 M 24 "" dgv146e1 1 166513664 166616844 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv13567,essv1909,essv267,essv3072,essv23,essv14651,essv14880,essv1248,essv2467,essv4603,essv12699,essv2533,essv835,essv22553,essv1345,essv6164,essv6676,essv15242,essv23242,essv10019,essv4422,essv8834,essv8640,essv13156,essv7217,essv2808,essv337,essv16143,essv17078,essv13660,essv4169,essv2609,essv4896,essv6773,essv8199,essv23508,essv5323,essv7581,essv14145,essv22964,essv5788,essv19671,essv6625,essv8445,essv24423,essv24905,essv23424,essv9238,essv5537,essv15069,essv22777,essv4719,essv20003,essv14304,essv5051,essv4835,essv18188,essv10199,essv8918,essv13094,essv643,essv11536,essv16557,essv19456,esv157,essv4961,essv20948,essv5192,essv13927,essv10887,essv23086,essv17290,essv16342,essv13448,essv14408,essv14123,essv15314,essv11221,essv16278,essv21198,essv10120,essv15825,essv17742,essv9703,essv7383,essv18709,essv2347,essv17130,essv4277,essv10387,essv1444,essv1745,essv22361,essv12654,essv3407,essv22820,essv5276,essv20611,essv11136,essv238,essv14759,essv2079,essv458,essv2838,essv16005,essv11622,essv11892,essv20199,essv11944,essv12489,essv2629,essv170,essv15508,essv14513,essv4802,essv10264,essv21271 M 271 0 0 "" NA06994,NA07019,NA07029,NA07034,NA07048,NA07056,NA07348,NA07357,NA10831,NA10854,NA10855,NA11830,NA11832,NA11840,NA12004,NA12057,NA12264,NA12707,NA12801,NA12812,NA12874,NA12875,NA18500,NA18501,NA18502,NA18505,NA18506,NA18507,NA18508,NA18516,NA18522,NA18524,NA18529,NA18532,NA18540,NA18545,NA18547,NA18555,NA18561,NA18562,NA18563,NA18566,NA18573,NA18576,NA18603,NA18608,NA18611,NA18620,NA18621,NA18622,NA18623,NA18624,NA18637,NA18852,NA18854,NA18856,NA18861,NA18862,NA18913,NA18914,NA18940,NA18944,NA18945,NA18948,NA18949,NA18952,NA18953,NA18967,NA18968,NA18971,NA18973,NA18975,NA18976,NA18978,NA18981,NA18987,NA18990,NA18991,NA18995,NA18997,NA18999,NA19003,NA19007,NA19093,NA19094,NA19099,NA19100,NA19102,NA19116,NA19119,NA19128,NA19129,NA19130,NA19140,NA19152,NA19154,NA19159,NA19160,NA19161,NA19171,NA19172,NA19173,NA19192,NA19193,NA19194,NA19200,NA19202,NA19204,NA19207,NA19209,NA19210,NA19211,NA19221,NA19222,NA19223,NA19239 nsv433500 1 166702480 166710759 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463381 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA18956 nsv160809 1 166833759 166833759 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv179387 M 24 "" nsv3454 1 166866538 166881105 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7785 S 9 0 1 "" NA12156 nsv527360 1 166955008 166959953 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703790 S 2026 0 1 "" dgv147e1 1 167046739 167118989 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv13980,essv13306,essv13121 M 271 0 0 "" NA18859,NA19098,NA19202 dgv148e1 1 167046739 167144950 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv985,essv13274 M 271 0 0 "" NA19201 nsv437269 1 167074947 167092830 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467150 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA10857 nsv441720 1 167099304 167118863 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv517083 1 167103061 167112138 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv652418,nssv666937,nssv692344,nssv673960,nssv653760 M 2026 0 5 "" nsv3465 1 167126953 167153621 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7115 S 9 1 0 "" NA12156 nsv3476 1 167234942 167268627 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4807 S 9 1 0 "" NA19129 nsv3487 1 167699896 167704631 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7801 S 9 1 0 "" NA12156 nsv831882 1 167897882 168057741 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451250 S 95 0 1 "" esv33004 1 167986802 167987124 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99360 S 51 1 0 "" 22275 nsv527149 1 168030598 168032006 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703539 S 2026 1 0 "" nsv465628 1 168113404 168141173 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541402 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00984 nsv524551 1 168139419 168142190 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700502 S 2026 0 1 "" nsv508045 1 168149108 168155108 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618513 S 4 0 1 "" CHM nsv508046 1 168168052 168174052 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622299 S 4 0 1 "" NA10860 nsv465639 1 168191165 168276709 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541409 S 1557 0 1 "" 1780862355_A nsv3498 1 168245542 168278989 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv305 S 9 1 0 "" NA19240 nsv528322 1 168310189 168343924 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704903 S 2026 0 1 "" nsv3509 1 168422375 168456812 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv314 S 9 1 0 "" NA19240 nsv522889 1 168481322 168486728 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698547 S 2026 0 1 "" nsv518222 1 168484696 168495206 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695646 S 2026 0 1 "" nsv160770 1 168533339 168533339 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv179348 M 24 "" nsv831893 1 168534107 168716657 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451261 S 95 0 1 "" nsv3521 1 168572473 168606086 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2709 S 9 1 0 "" NA18555 nsv3532 1 168729108 168774008 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7807 S 9 0 1 "" NA12156 nsv508047 1 168887922 168893922 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624223,nssv618514 M 4 0 2 "" CHM,NA18994 nsv465650 1 168906772 168978784 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541416 S 1557 0 1 "" NINDS_147 nsv3543 1 169055220 169066243 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7816 S 9 0 1 "" NA12156 nsv3554 1 169240917 169274588 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4815 S 9 1 0 "" NA19129 nsv7185 1 169417346 169456397 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3511 S 9 0 0 "" NA12878 nsv3565 1 169431059 169442811 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4834 S 9 1 0 "" NA19129 nsv3576 1 169476355 169509798 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv323 S 9 1 0 "" NA19240 nsv159827 1 169540102 169541425 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178405 M 24 "" nsv3587 1 169568607 169613875 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7825 S 9 0 1 "" NA12156 nsv831904 1 169643767 169802086 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451283,nssv1451272 M 95 1 1 "" nsv831915 1 170000081 170213814 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451417,nssv1451339,nssv1451439,nssv1451450,nssv1451350,nssv1451461,nssv1451383,nssv1451361,nssv1451428,nssv1451295,nssv1451317,nssv1451328,nssv1451406,nssv1451372,nssv1451394,nssv1451306 M 95 5 11 "" nsv523009 1 170037289 170055953 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698682 S 2026 1 0 "" nsv3598 1 170424684 170470344 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7123 S 9 0 1 "" NA12156 nsv831926 1 170434060 170626324 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451483,nssv1451472 M 95 1 1 "" dgv149e1 1 170542299 170687600 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv10742,esv155 M 271 0 0 "" NA18523 nsv8535 1 170595643 170598457 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26548 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA10839 nsv831937 1 170681030 170863120 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451494 S 95 1 0 "" nsv465661 1 170746164 170884345 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541421 S 1557 0 1 "" NINDS_156 nsv465672 1 170864908 171201562 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541429 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01035 nsv528675 1 170927286 170951055 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705315 S 2026 0 1 "" dgv150e1 1 171200938 171301433 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2829,esv408 M 271 0 0 "" NA18987 nsv516953 1 171525801 171533296 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv689619,nssv676536,nssv662876,nssv682636,nssv674815,nssv668800,nssv658864,nssv671740,nssv673769,nssv690088,nssv669006,nssv688608,nssv693813,nssv653495,nssv681207,nssv680872,nssv655321,nssv662119,nssv656346,nssv667437,nssv683755,nssv654147,nssv672695,nssv679161,nssv657758,nssv684664,nssv655495,nssv668038,nssv676975,nssv685628,nssv653251,nssv654820,nssv671253,nssv661802,nssv690061,nssv686413,nssv684850,nssv690670,nssv689849,nssv660665,nssv683911,nssv681242,nssv661485,nssv679149,nssv672125,nssv687470,nssv660644,nssv656466,nssv680548,nssv665088,nssv667701,nssv653107,nssv684419,nssv683552,nssv667209,nssv661008,nssv667673,nssv666688,nssv653293,nssv654840,nssv669329,nssv659186,nssv690880,nssv662304,nssv690190,nssv668872,nssv667835,nssv687686,nssv666986,nssv667260,nssv666232,nssv679937,nssv658163,nssv674922,nssv684088,nssv693251,nssv692307,nssv688712,nssv695402,nssv668120,nssv667020,nssv681548,nssv660506,nssv658405,nssv689601,nssv691616,nssv687121,nssv659239,nssv693004,nssv659096,nssv692290,nssv656085,nssv687143,nssv656604,nssv685175,nssv657471 M 2026 1 95 "" dgv16n17 1 171525801 171536779 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437280,nsv437291,nsv437302 M 60 0 3 "" NA10830,NA10835,NA10846 nsv8547 1 171526198 171533613 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22759,nssv24578,nssv23082,nssv22092,nssv26183,nssv21765,nssv23698,nssv20425 M 31 0 8 Samples from several populations that are part of the HapMap project. "" NA18502,NA18537,NA18563,NA18564,NA18860,NA18942,NA18980,NA19007 nsv442393 1 171528213 171533497 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv43n27 1 171529524 171533296 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv465750,nsv465972,nsv465950,nsv465839,nsv465827,nsv465783,nsv465805,nsv465961,nsv465772,nsv465894,nsv465983,nsv465816,nsv465861,nsv465683,nsv465883,nsv465905,nsv466038,nsv465850,nsv466049,nsv465916,nsv465728,nsv465938,nsv466005,nsv465927,nsv465705,nsv466061,nsv465739,nsv465761,nsv465694,nsv465872,nsv466016,nsv466027,nsv465716,nsv465794,nsv465994 M 1557 0 35 "" 1780846322_A,1780862020_A,1780862196_A,1780862263_A,1780862390_A,1780862419_A,1782681095_A,1782681144_A,1798860251_A,1798860491_A,HGDP00064,HGDP00100,HGDP00298,HGDP00338,HGDP00545,HGDP00590,HGDP00601,HGDP00629,HGDP00649,HGDP00670,HGDP00975,HGDP01172,HGDP01203,HGDP01212,HGDP01220,HGDP01227,HGDP01248,HGDP01323,HGDP01326,HGDP01337,HGDP01339,NINDS_127,NINDS_17,NINDS_204,NINDS_253 nsv438104 1 171529524 171533296 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv469507,nssv469485,nssv469519,nssv469474,nssv469530,nssv469496 M 269 0 6 Samples from several populations that are part of the HapMap project. "" NA10830,NA10835,NA10846,NA12144,NA12154,NA12248 nsv818578 1 171529524 171533296 CNV Gain+Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417358,nssv1415809,nssv1417158,nssv1417553,nssv1415810,nssv1415811,nssv1417223,nssv1417593,nssv1417137 M 112 1 8 "" NA10860,NA11992,NA11993,NA18542,NA18547,NA18576,NA18612,NA18971,NA18978 nsv508048 1 171724841 171730841 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618515,nssv621482,nssv624224,nssv622300 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv3609 1 171778069 171826063 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2608,nssv10357 M 9 0 2 "" NA18555,NA18956 nsv508648 1 171788044 171853570 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618991,nssv622779 M 4 0 2 "" NA10860,NA18994 nsv3620 1 171802973 171804186 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4851 S 9 1 0 "" NA19129 nsv160653 1 171823251 171823302 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv179231 M 24 "" nsv522101 1 171841174 171882840 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694873 S 2026 0 1 "" nsv528874 1 171871976 171882840 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705554 S 2026 0 1 "" nsv831948 1 171961288 172138960 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441520,nssv1441521,nssv1451505 M 95 0 3 "" nsv159978 1 172127710 172127771 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178556 M 24 "" nsv524232 1 172135166 172143635 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700122 S 2026 0 1 "" nsv517137 1 172143569 172143635 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv657248,nssv692108,nssv669181,nssv677118,nssv676402,nssv693365,nssv661290,nssv688982,nssv682338,nssv653846,nssv656856,nssv673770,nssv683938,nssv662803 M 2026 0 14 "" nsv527256 1 172162512 172313907 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703660 S 2026 1 0 "" nsv466072 1 172162512 172470660 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541710 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00885 nsv528975 1 172162512 172488899 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705674 S 2026 1 0 "" nsv3633 1 172172282 172204106 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10362 S 9 1 0 "" NA18956 esv33328 1 172178240 172641658 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97518,essv93203 M 51 2 0 "" 21616,22170 nsv508659 1 172227437 172279565 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618992 S 4 0 1 "" NA10860 nsv3644 1 172234336 172267240 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv334 S 9 1 0 "" NA19240 nsv831959 1 172308041 172508386 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441522 S 95 1 0 "" nsv528915 1 172467037 172470660 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705601 S 2026 0 1 "" nsv3655 1 172499514 172533332 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7838 S 9 1 0 "" NA12156 nsv522255 1 172559340 172581555 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695035 S 2026 0 1 "" nsv8558 1 172866720 172873573 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27167 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19221 nsv525586 1 172956403 173008709 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701725 S 2026 1 0 "" nsv159951 1 172968416 172971457 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178529 M 24 "" nsv831970 1 173117819 173300864 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441523 S 95 1 0 "" nsv159940 1 173209890 173210445 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178518 M 24 "" nsv831982 1 173262278 173443625 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441524 S 95 1 0 "" nsv3666 1 173308352 173352667 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2609,nssv9379 M 9 0 2 "" NA18517,NA18555 nsv818589 1 173322948 173336221 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416423 S 112 0 1 "" NA18517 nsv466094 1 173378040 173416610 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541727 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01100 esv33914 1 173383168 173383771 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93248 S 51 1 0 "" 22170 nsv466105 1 173399467 173458759 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541737 S 1557 0 1 "" 1780862081_A nsv508049 1 173419139 173425139 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624225 S 4 0 1 "" NA18994 nsv3677 1 173544114 173589478 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7142 S 9 0 1 "" NA12156 nsv3688 1 174037814 174072828 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv342 S 9 1 0 "" NA19240 nsv3699 1 174044402 174089292 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7860 S 9 0 1 "" NA12156 nsv508050 1 174215383 174221383 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624226 S 4 0 1 "" NA18994 nsv831993 1 174357044 174518384 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441525 S 95 1 0 "" nsv518310 1 174477111 174596211 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695741 S 2026 0 1 "" nsv523131 1 174712716 174732178 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698835 S 2026 0 1 "" nsv508670 1 174925099 174956512 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620143 S 4 0 1 "" NA15510 nsv517431 1 175195248 175203151 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv688435,nssv669007,nssv688900,nssv688197,nssv703322,nssv660818,nssv688983,nssv652157,nssv681635,nssv690204,nssv678211,nssv656754,nssv664446,nssv689697,nssv683119,nssv664300,nssv665325,nssv656467,nssv655960,nssv670337,nssv669825,nssv673042,nssv663102,nssv683662,nssv689193,nssv654306,nssv687659,nssv684157,nssv652004,nssv678160,nssv661194,nssv661291 M 2026 0 32 "" nsv818600 1 175202522 175203151 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417820,nssv1417819 M 112 2 0 "" NA18852,NA18853 nsv527862 1 175238251 175283129 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704360 S 2026 0 1 "" nsv160911 1 175286841 175292143 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv179489 M 24 "" nsv437255 1 175365030 175417904 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467136 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19211 nsv466116 1 175369572 175389273 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541747 S 1557 0 1 "" 1780854065_A nsv160394 1 175381545 175389933 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178972 M 24 "" dgv151e1 1 175389239 175405731 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv10606,essv15159,esv935,essv13943 M 271 0 0 "" NA19160,NA19210,NA19211 dgv44n27 1 175391590 175405731 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv466127,nsv466138,nsv466173,nsv466160,nsv466195,nsv466184 M 1557 0 6 "" HGDP00913,HGDP00937,HGDP00943,NINDS_104,NINDS_125,NINDS_145 nsv515903 1 175391590 175405731 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv670036,nssv673771,nssv679183,nssv665216,nssv690430,nssv687019,nssv691413,nssv662753,nssv657974,nssv674823,nssv666332,nssv675619,nssv680460,nssv686573,nssv675249,nssv667909 M 2026 0 16 "" nsv818611 1 175391590 175405731 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416700 S 112 0 1 "" NA19160 nsv466149 1 175391590 175408622 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541765 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01415 nsv441721 1 175391967 175405845 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv525444 1 175394518 175619220 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701572 S 2026 0 1 "" nsv466206 1 175401328 175575551 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541816 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00554 nsv3710 1 175552032 175590558 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3540,nssv10378 M 9 2 0 "" NA12878,NA18956 nsv528689 1 175681975 175699975 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705332 S 2026 0 1 "" nsv441722 1 175685403 175708386 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv3721 1 175751528 175794951 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7865,nssv4852 M 9 2 0 "" NA12156,NA19129 nsv523708 1 176023657 176025168 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699518 S 2026 0 1 "" nsv518403 1 176055576 176103630 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695834 S 2026 1 0 "" esv33901 1 176060365 176076562 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101584,essv94675,essv93067,essv95895,essv92933,essv94856,essv99451 M 51 0 7 "" 21603,21791,21863,21911,21939,22231,22335 nsv442505 1 176062185 176064972 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv523087 1 176084393 176103630 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698779 S 2026 1 0 "" nsv522746 1 176233022 176250116 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698381 S 2026 0 1 "" nsv523253 1 176247729 176250116 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698982 S 2026 0 1 "" nsv3732 1 176285651 176317745 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv349,nssv2715 M 9 2 0 "" NA18555,NA19240 esv33942 1 176454495 176455979 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv94149 S 51 0 1 "" 22394 dgv19n21 1 176493258 176527162 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv519307,nsv520418 M 2026 0 2 "" nsv522044 1 176497743 176497829 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694814 S 2026 0 1 "" nsv528201 1 176562905 176564300 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704761 S 2026 0 1 "" nsv519273 1 176562905 176579534 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696760 S 2026 0 1 "" nsv518936 1 176579059 176589990 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696401 S 2026 1 0 "" nsv3744 1 176612332 176642952 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4866 S 9 1 0 "" NA19129 nsv466228 1 176676558 176799645 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541832 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00766 nsv520322 1 176676558 176803644 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv662917,nssv689825,nssv692308 M 2026 0 3 "" nsv520278 1 176677047 176824723 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697322 S 2026 1 0 "" nsv3755 1 176730517 176775211 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7871 S 9 0 1 "" NA12156 nsv832004 1 176860159 177067197 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441528,nssv1441531,nssv1441529,nssv1441532,nssv1441527,nssv1441526 M 95 6 0 "" nsv466239 1 176877635 177000133 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541841 S 1557 1 0 "" NINDS_23 nsv522045 1 176883899 176891311 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694815 S 2026 0 1 "" nsv528041 1 176886433 176895047 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704573 S 2026 0 1 "" nsv527918 1 177011367 177175465 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704424 S 2026 1 0 "" nsv3766 1 177115613 177141917 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv358 S 9 1 0 "" NA19240 nsv3777 1 177472870 177511970 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7149,nssv3551 M 9 0 2 "" NA12156,NA12878 nsv159447 1 177559861 177559861 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178025 M 24 "" nsv508051 1 177724096 177730096 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621483 S 4 0 1 "" NA15510 nsv521968 1 177863376 177864932 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694736 S 2026 1 0 "" nsv3788 1 178036531 178070993 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv364 S 9 1 0 "" NA19240 nsv527166 1 178041057 178042138 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703560 S 2026 0 1 "" nsv528924 1 178090064 178100454 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705614 S 2026 0 1 "" nsv508052 1 178117259 178123259 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621484 S 4 0 1 "" NA15510 nsv517925 1 178251012 178260856 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695336 S 2026 0 1 "" nsv516290 1 178336822 178343698 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv685471,nssv667373 M 2026 2 0 "" nsv3799 1 178651124 178667387 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3561 S 9 1 0 "" NA12878 nsv523295 1 178939468 178943080 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699035 S 2026 0 1 "" nsv528762 1 179233166 179238479 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705424 S 2026 0 1 "" nsv3810 1 179331402 179362382 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7892 S 9 0 1 "" NA12156 nsv159118 1 179519108 179528412 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv177696 M 24 "" nsv159601 1 179683681 179683981 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178179 M 24 "" esv33222 1 179882143 179883351 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100957,essv98549,essv94919,essv99177 M 51 4 0 "" 21693,22085,22231,22275 esv33688 1 179896619 179897357 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93858,essv100888,essv95097,essv94731,essv97844,essv96331 M 51 0 6 "" 21634,21656,21721,21791,21837,22371 nsv437256 1 180133537 180146975 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467137 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18515 nsv832015 1 180410376 180607075 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441533 S 95 1 0 "" nsv441723 1 180511747 180517196 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv832026 1 180516722 180693504 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441561,nssv1441556,nssv1441555,nssv1441544,nssv1441539,nssv1441568,nssv1441560,nssv1441557,nssv1441559,nssv1441572,nssv1441578,nssv1441538,nssv1441535,nssv1441571,nssv1441562,nssv1441564,nssv1441567,nssv1441565,nssv1441566,nssv1441536,nssv1441537,nssv1441558,nssv1441569,nssv1441570,nssv1441575,nssv1441543,nssv1441573,nssv1441542,nssv1441576,nssv1441540,nssv1441577,nssv1441579,nssv1441554,nssv1441580,nssv1441534,nssv1441581,nssv1441553,nssv1441547,nssv1441545,nssv1441546,nssv1441549,nssv1441548,nssv1441551,nssv1441550 M 95 4 40 "" nsv525878 1 180574761 180645197 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702078 S 2026 1 0 "" nsv526480 1 180664116 180669859 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702789 S 2026 0 1 "" nsv818622 1 180876652 180890453 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417161 S 112 0 1 "" NA12234 nsv528772 1 181020477 181022172 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705436 S 2026 0 1 "" nsv3821 1 181051200 181096893 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6004 S 9 0 1 "" NA12156 nsv832037 1 181299851 181488254 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441582 S 95 1 0 "" dgv20n21 1 181314951 181328241 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv525959,nsv528925 M 2026 0 2 "" nsv832048 1 181391803 181590459 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441584,nssv1441583 M 95 0 2 "" nsv508053 1 181396550 181402550 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624227,nssv622301 M 4 0 2 "" NA10860,NA18994 nsv508677 1 181510277 181556959 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617374 S 4 0 1 "" CHM nsv3832 1 181516099 181524328 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6014 S 9 0 1 "" NA12156 nsv3843 1 181530327 181589771 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4876,nssv372,nssv3572,nssv2626,nssv6025 M 9 0 5 "" NA12156,NA12878,NA18555,NA19129,NA19240 nsv525731 1 181543822 181769761 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701895 S 2026 1 0 "" dgv6n6 1 181546386 181552456 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv159898,nsv160177 M 24 "" nsv522073 1 181718382 181745006 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694127 S 2026 0 1 "" nsv521613 1 181803488 181903526 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698231 S 2026 0 1 "" nsv3855 1 181930204 181963726 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv383 S 9 1 0 "" NA19240 dgv152e1 1 182024854 182077428 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1176,essv7438,essv980 M 271 0 0 "" NA18582,NA18964 nsv159375 1 182053009 182056278 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv177953 M 24 "" nsv160209 1 182168954 182169136 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178787 M 24 "" nsv3866 1 182693597 182727809 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2721 S 9 1 0 "" NA18555 nsv523794 1 183048145 183059193 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699622 S 2026 0 1 "" nsv527758 1 183183728 183188634 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704245 S 2026 0 1 "" nsv832059 1 183196589 183370782 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441586 S 95 1 0 "" nsv466261 1 183384052 183474604 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541854 S 1557 0 1 "" 1780862358_A nsv466272 1 183474604 183534883 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541863 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01185 nsv160133 1 183496667 183497161 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178711 M 24 "" nsv3877 1 183639216 183672750 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv393 S 9 1 0 "" NA19240 esv2750817 1 183802012 184721251 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6980762,essv6980761,essv6989196,essv6987845,essv6987844 M 771 0 1 "" BEC_132 nsv441724 1 184030027 184032348 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv522765 1 184052355 184059053 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698405 S 2026 0 1 "" nsv518497 1 184052355 184073095 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695938 S 2026 0 1 "" nsv3888 1 184122819 184134545 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2637 S 9 1 0 "" NA18555 nsv3899 1 184200315 184245679 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6036 S 9 0 1 "" NA12156 nsv466284 1 184244938 184331094 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541871 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00526 nsv517291 1 184284322 184331094 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv670220,nssv679016,nssv664938,nssv689742,nssv659699,nssv682899,nssv652158,nssv661486,nssv657606,nssv673863,nssv653013,nssv662305,nssv661819,nssv657962,nssv671386,nssv658758,nssv652883,nssv670152,nssv654217,nssv691414,nssv683038,nssv687511,nssv653321,nssv681964,nssv663117,nssv685472,nssv659007,nssv682475,nssv684899,nssv658705,nssv662004 M 2026 0 31 "" nsv818633 1 184304680 184312960 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418425,nssv1418247,nssv1418246 M 112 0 3 "" NA19092,NA19094,NA19140 nsv466295 1 184304680 184327571 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541880 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01415 nsv516534 1 184377549 184486682 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv685705,nssv668934 M 2026 0 2 "" nsv521863 1 184393187 184515595 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694105 S 2026 1 0 "" nsv466306 1 184413015 184435474 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541888 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00155 nsv3910 1 184437786 184455411 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3590 S 9 0 1 "" NA12878 nsv508679 1 184453854 184461050 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617385 S 4 0 1 "" CHM nsv466317 1 184463274 184543681 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541894 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00664 nsv466328 1 184478020 184515024 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541901 S 1557 0 1 "" 1780862358_A nsv832070 1 184541694 184723400 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441587 S 95 1 0 "" nsv516633 1 184671650 184678797 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697506,nssv679415,nssv669738,nssv681521,nssv689014 M 2026 1 4 "" nsv466339 1 184724650 184749602 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541910 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00397 nsv832081 1 184754974 184909914 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441588 S 95 1 0 "" nsv520044 1 184896062 184900763 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697193 S 2026 0 1 "" nsv832093 1 184928765 185096041 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441589 S 95 0 1 "" nsv520507 1 184939014 184943749 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697460 S 2026 0 1 "" nsv506966 1 184982007 184988007 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620672,nssv619253 M 4 2 0 "" NA10860,NA15510 nsv508680 1 185091234 185109911 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618993 S 4 0 1 "" NA10860 nsv466361 1 185114122 185187066 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541921 S 1557 0 1 "" 1780862574_A nsv466372 1 185144402 185187582 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541931 S 1557 1 0 "" NINDS_272 nsv159069 1 185271114 185271888 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv177647 M 24 "" nsv520438 1 185303053 185379244 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv671412,nssv673941 M 2026 0 2 "" dgv45n27 1 185466993 185614694 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv466417,nsv466450,nsv466428,nsv466439 M 1557 0 4 "" 1782681169_A,HGDP00092,HGDP00948,HGDP01199 nsv508054 1 185489283 185495283 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618516,nssv622302,nssv621485,nssv624228 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv519541 1 185492285 185534199 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696909 S 2026 0 1 "" nsv466461 1 185534199 185663485 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542002 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00143 dgv21n21 1 185582431 185699013 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv526242,nsv517867 M 2026 0 2 "" nsv520309 1 185632802 185663485 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697339 S 2026 1 0 "" nsv516989 1 185726253 185760855 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv667276,nssv684062,nssv658943,nssv702010,nssv657759,nssv678891,nssv693225,nssv677977,nssv653563,nssv654370,nssv671281,nssv675301,nssv685022,nssv656605,nssv685262,nssv663717,nssv681795,nssv686696,nssv671254,nssv672974,nssv664098,nssv684158 M 2026 0 22 "" nsv441725 1 185758881 185763020 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv46n27 1 185759812 185859781 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv466483,nsv466472,nsv466494 M 1557 0 3 "" HGDP00213,HGDP00734,NINDS_44 nsv506967 1 185773879 185779879 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619254 S 4 1 0 "" NA10860 esv2750818 1 185785863 186210097 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6981586,essv6981585,essv6981584,essv6981583,essv6988423 M 771 1 0 "" BEC_303 esv2750819 1 185795988 186069654 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6985676,essv6981834 M 771 1 0 "" BEC_492 dgv17n17 1 185815175 185832364 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437259,nsv437260 M 60 0 2 "" NA18854,NA18914 nsv441726 1 185818657 185824149 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv466506 1 185818874 185821225 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542036 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00907 nsv516535 1 185818874 185821225 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv668968,nssv659106,nssv685805,nssv685684 M 2026 0 4 "" nsv818644 1 185818874 185821225 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417821,nssv1417822 M 112 0 2 "" NA18852,NA18854 nsv521180 1 185913082 185970322 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv687626,nssv683912 M 2026 0 2 "" nsv8569 1 185975191 185978815 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23397 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19240 dgv153e1 1 185978190 186244871 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv670,essv2677,essv4457 M 271 0 0 "" NA18552,NA18967,NA18975 dgv154e1 1 185978190 186380985 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv3015,esv840 M 271 0 0 "" NA18981 nsv466517 1 185996406 186049278 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542045 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00472 dgv9e55 1 186049278 186269000 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv34856,esv34517,esv34476,esv34572,esv34601,esv34831 M 771 0 6 "" NA18542,NA18552,NA18562,NA18967,NA18975,NA18981 dgv155e1 1 186049278 186300204 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv5425,essv964,essv5879,essv5966,essv1063,essv3253 M 271 0 0 "" NA18542,NA18552,NA18562,NA18967,NA18975,NA18981 nsv8580 1 186057175 186276606 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22426,nssv26711,nssv23390 M 31 1 2 Samples from several populations that are part of the HapMap project. "" NA12155,NA18552,NA18975 nsv442526 1 186058792 186184800 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv47n27 1 186080119 186275233 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv466539,nsv466550,nsv466561,nsv466528 M 1557 0 4 "" 1780862003_A,HGDP01097,HGDP01221,HGDP01288 nsv818655 1 186082357 186275233 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417149 S 112 0 1 "" NA18542 dgv22n21 1 186082357 186331808 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv520867,nsv523001 M 2026 0 5 "" essv6767 1 186087925 186244871 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18562 nsv466572 1 186130295 186211935 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542087 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01186 nsv466583 1 186133335 186258918 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542096 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01189 dgv48n27 1 186180233 186274386 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv466594,nsv466605,nsv466617 M 1557 0 3 "" HGDP00100,HGDP00716,HGDP01323 essv6420 1 186223059 186251905 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18545 nsv466628 1 186280068 186331808 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542129 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00208 nsv8591 1 186349152 186351920 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23999 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18942 nsv3921 1 186400062 186542295 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3600,nssv7919 M 9 0 2 "" NA12156,NA12878 nsv466683 1 186430271 186469046 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542165 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00942 nsv433190 1 186438282 186512690 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463071 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA12878 nsv437313 1 186439624 186511188 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467194 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA12878 nsv438115 1 186443828 186513226 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv469552,nssv469574,nssv469541,nssv469563 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA12878,NA12892 nsv818667 1 186449316 186513226 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416123,nssv1416124 M 112 0 2 "" NA12878,NA12892 nsv522081 1 186468490 186469046 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694855 S 2026 0 1 "" essv18023 1 186468490 186513163 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12878 dgv156e1 1 186468490 186551144 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1108,essv25073 M 271 0 0 "" NA12892 nsv519337 1 186495412 186508898 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694324 S 2026 1 0 "" dgv49n27 1 186496510 186504804 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv466705,nsv466694 M 1557 0 2 "" 1780862459_A,NINDS_101 nsv466716 1 186498596 186512690 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542192 S 1557 0 1 "" NINDS_106 nsv517396 1 186502475 186508898 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv659107,nssv664246,nssv685023,nssv675140,nssv658182,nssv703103,nssv660367,nssv683233,nssv699237,nssv653908,nssv682737,nssv685473,nssv686826,nssv659973,nssv663295,nssv661361,nssv693047,nssv654489,nssv682339,nssv662585,nssv686697,nssv686196,nssv652097,nssv682510,nssv673135,nssv672975,nssv679917,nssv691245,nssv704565,nssv692109,nssv690062,nssv672205,nssv664328 M 2026 6 27 "" nsv818678 1 186502475 186508898 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416628,nssv1416626 M 112 0 2 "" NA19116,NA19119 nsv466728 1 186502475 186511286 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542200 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00927 nsv466739 1 186503662 186504804 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542206 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00473 nsv8602 1 186508452 186518344 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26179 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18517 nsv520978 1 186508898 186517490 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697719 S 2026 1 0 "" nsv8613 1 186522110 186537615 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23077,nssv22417 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA11830,NA18860 nsv516072 1 186567177 186610251 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv689230,nssv659097,nssv666025 M 2026 0 3 "" nsv508055 1 186634257 186640257 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618517 S 4 0 1 "" CHM dgv157e1 1 186690763 186726869 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv7508,esv1119,essv6109 M 271 0 0 "" NA18532,NA18573 essv7486 1 186691574 186716570 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18561 esv35062 1 186702000 186717000 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6988202,essv6979582 M 771 0 1 "" NA18573 nsv441727 1 186702023 186718083 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" essv2705 1 186702057 186723724 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18944 nsv8624 1 186707530 186716096 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22107 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19132 nsv832104 1 186721805 186918365 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441590 S 95 1 0 "" esv2750820 1 186729714 186783768 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6981914,essv6989542 M 771 0 1 "" BEC_501 nsv506968 1 186736468 186742468 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619255,nssv620673,nssv617544 M 4 3 0 "" CHM,NA10860,NA15510 nsv518715 1 186741358 186774363 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696166 S 2026 0 1 "" nsv161162 1 186814619 186814688 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv179740 M 24 "" nsv3932 1 186879397 186913678 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3611 S 9 1 0 "" NA12878 dgv50n27 1 187165070 187227664 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv466772,nsv466750 M 1557 0 2 "" HGDP00088,HGDP00963 nsv523002 1 187263299 187347294 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698674 S 2026 0 1 "" nsv508681 1 187364841 187369306 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622781 S 4 0 1 "" NA18994 nsv466783 1 187367437 187411507 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542249 S 1557 0 1 "" NINDS_94 nsv524018 1 187386977 187413481 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699879 S 2026 0 1 "" dgv51n27 1 187390086 187419510 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv466861,nsv466872,nsv466850 M 1557 0 3 "" HGDP00090,HGDP00154,HGDP00189 nsv466883 1 187395946 187450689 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542333 S 1557 0 1 "" NINDS_147 nsv466916 1 187407193 187501451 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542354 S 1557 0 1 "" 1780862202_A nsv466927 1 187415920 187450689 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542365 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00003 nsv508056 1 187439331 187445331 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621486 S 4 0 1 "" NA15510 nsv832115 1 187446327 187599602 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441591,nssv1441592,nssv1441593 M 95 0 3 "" nsv832126 1 187447097 187605655 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441595,nssv1441594 M 95 1 1 "" nsv526834 1 187501451 187505486 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703191 S 2026 1 0 "" nsv508682 1 187607084 187647701 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618994 S 4 0 1 "" NA10860 nsv506969 1 187638263 187644263 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623287 S 4 1 0 "" NA18994 nsv3943 1 187880834 187925704 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7927 S 9 0 1 "" NA12156 nsv160872 1 188055642 188062808 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv179450 M 24 "" nsv818689 1 188081271 188103522 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417276 S 112 1 0 "" NA18593 nsv466961 1 188160138 188237630 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542397 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00885 esv2750821 1 188191485 188353449 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6983933,essv6983932,essv6987448 M 771 1 0 "" BEC_735 nsv519339 1 188213089 188309049 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696800 S 2026 0 1 "" nsv160380 1 188277647 188277708 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178958 M 24 "" nsv466972 1 188365003 188399570 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542408 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00241 nsv441728 1 188448372 188457815 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv517577 1 188451084 188453120 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv652420,nssv693927,nssv663568,nssv674400,nssv689210,nssv675013,nssv667910 M 2026 0 7 "" dgv158e1 1 188509177 188557409 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1682,esv1363 M 271 0 0 "" NA18992 nsv818700 1 188530621 188572583 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417651 S 112 0 1 "" NA18992 nsv516096 1 188551538 188607409 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv686095,nssv680850,nssv677013,nssv659732,nssv669667,nssv652591,nssv674466,nssv676918,nssv673888,nssv681417,nssv671681,nssv680900,nssv663258,nssv668039,nssv686543,nssv680928,nssv687279,nssv676403,nssv662068,nssv669953,nssv652497,nssv692926,nssv653202,nssv674888,nssv652447,nssv677501,nssv671538,nssv668149,nssv679918,nssv665353,nssv684929,nssv688146,nssv688215,nssv665791,nssv693158,nssv686520,nssv662182,nssv673577,nssv664133,nssv671458,nssv664020,nssv669182,nssv685719,nssv665890,nssv666333,nssv685474,nssv666810,nssv675918,nssv658201,nssv688251,nssv680386,nssv681775,nssv665605,nssv671282,nssv664908,nssv662005 M 2026 0 56 "" nsv442538 1 188560726 188598907 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv4n64 1 188567973 188599737 CNV Loss Wang_et_al_2007 17921354 SNP_array nsv818722,nsv818711 M 112 0 4 "" NA18852,NA19119,NA19140,NA19142 nsv466983 1 188567973 188599970 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542419 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00928 nsv526835 1 188642876 188647779 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703192 S 2026 1 0 "" nsv832137 1 188662701 188800790 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441597 S 95 1 0 "" nsv518617 1 188685332 188715515 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696065 S 2026 0 1 "" nsv516881 1 188937689 188946721 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv693366,nssv654658,nssv680901,nssv683874,nssv678838 M 2026 0 5 "" nsv466994 1 189094972 190252992 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542430 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01156 nsv517084 1 189150579 189150902 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv653761,nssv696512,nssv681730 M 2026 0 3 "" nsv159529 1 189257458 189257458 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178107 M 24 "" nsv3954 1 189262148 189292449 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv11135 S 9 1 0 "" NA15510 nsv467005 1 189281569 189357017 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542441 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01348 nsv516016 1 189302364 189303768 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv670902,nssv665741 M 2026 0 2 "" esv33012 1 189574539 189575057 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101434,essv98727,essv100687,essv100972,essv98222,essv94068,essv94424,essv96980,essv98937,essv93299,essv99601,essv99256,essv99472,essv98434,essv96248 M 51 0 15 "" 21603,21606,21656,21693,21772,21802,21808,21817,21938,22170,22217,22275,22335,22352,22371 nsv519451 1 189612358 189620002 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv674228,nssv695356,nssv688081,nssv656226,nssv702332 M 2026 0 5 "" nsv3966 1 189708114 189736543 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7935 S 9 0 1 "" NA12156 nsv832148 1 189875602 190024554 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441598 S 95 1 0 "" nsv506970 1 189931888 189937888 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623288,nssv620674,nssv619256 M 4 3 0 "" NA10860,NA15510,NA18994 nsv832159 1 190074091 190256729 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441599 S 95 1 0 "" nsv832170 1 190158112 190327839 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441600 S 95 1 0 "" esv33988 1 190357834 190365919 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99184 S 51 0 1 "" 22275 esv34989 1 190362234 190441853 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6987880,essv6980937,essv6980936 M 771 0 1 "" NA19152 dgv159e1 1 190363185 190441853 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv7933,essv9475,essv12442,esv1030 M 271 0 0 "" NA19152,NA19154,NA19209 nsv441729 1 190392675 190442033 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv10e55 1 190394933 190441853 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv34261,esv34863 M 771 0 2 "" NA19154,NA19209 nsv467016 1 190754475 190769547 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542452 S 1557 0 1 "" NINDS_29 nsv522962 1 190767605 190768311 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698631 S 2026 0 1 "" nsv832181 1 190820774 190987272 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441601 S 95 0 1 "" nsv508057 1 190968123 190974123 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624229,nssv618518,nssv622303 M 4 0 3 "" CHM,NA10860,NA18994 nsv467027 1 190983478 191039859 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542463 S 1557 0 1 "" 1780854477_A nsv522808 1 190999058 191019553 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698454 S 2026 0 1 "" nsv525365 1 190999058 191228247 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701485 S 2026 1 0 "" nsv521911 1 191087232 191167998 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694682 S 2026 0 1 "" nsv467049 1 191135230 191177123 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542484 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00005 nsv508683 1 191182231 191207493 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618996,nssv622782 M 4 0 2 "" NA10860,NA18994 nsv511009 1 191234134 191248766 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622428 S 4 0 0 "" NA10860 nsv467072 1 191257544 191369413 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542502 S 1557 0 1 "" NINDS_95 nsv467094 1 191274940 191316634 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542512 S 1557 0 1 "" 1780854061_A nsv467105 1 191274940 191338639 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542523 S 1557 0 1 "" 1780862001_A nsv832192 1 191327117 191507321 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441602 S 95 0 1 "" esv32801 1 191497591 191498168 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98895 S 51 0 1 "" 21606 nsv519014 1 191499642 191564147 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696482 S 2026 0 1 "" nsv467116 1 191502990 191564147 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542524 S 1557 0 1 "" 1780862176_A nsv832204 1 191530226 191670977 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441603 S 95 1 0 "" nsv467138 1 191599567 191642021 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542525 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00910 nsv832215 1 191634625 191837791 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441604 S 95 0 1 "" dgv160e1 1 191669736 191674561 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv9553,essv11310,esv1343 M 271 0 0 "" NA18861,NA18863 nsv441730 1 191669736 191678911 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv515886 1 191736712 191750761 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv660551,nssv665143,nssv692441,nssv688609,nssv680761,nssv686061 M 2026 0 6 "" nsv441731 1 191745634 191750956 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv467160 1 191774034 191826637 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542526 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01323 nsv467172 1 191814395 191917080 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542528 S 1557 0 1 "" 1780862598_A nsv3977 1 191814856 191849964 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv402 S 9 1 0 "" NA19240 nsv528855 1 191844360 191877580 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705534 S 2026 0 1 "" dgv52n27 1 191898568 192012081 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv467183,nsv467194 M 1557 0 2 "" 1780862001_A,1798860071_A dgv53n27 1 191954237 192118554 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv467205,nsv467216 M 1557 2 0 "" HGDP00700,HGDP00737 nsv467227 1 191963724 192012081 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542570 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00141 dgv54n27 1 191979095 192035132 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv467238,nsv467249 M 1557 0 2 "" 1782681295_A,HGDP00146 dgv161e1 1 191987584 192311869 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv11638,esv392 M 271 0 0 "" NA19154 nsv467260 1 192004753 192072008 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542597 S 1557 0 1 "" 1780854299_A nsv523106 1 192028784 192044764 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698803 S 2026 0 1 "" nsv508058 1 192079278 192085278 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618519 S 4 0 1 "" CHM nsv516252 1 192094661 192095069 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv667077,nssv675919 M 2026 0 2 "" nsv520255 1 192103057 192108629 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697310 S 2026 0 1 "" nsv8635 1 192139191 192152491 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23707,nssv23990 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18504,NA19240 nsv442547 1 192141362 192147402 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv524595 1 192178943 192180427 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700555 S 2026 0 1 "" nsv832226 1 192241682 192410513 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441605 S 95 0 1 "" nsv525247 1 192258735 192308037 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701340 S 2026 0 1 "" nsv508684 1 192275792 192280417 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622783 S 4 0 1 "" NA18994 nsv509568 1 192288843 192325714 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623806 S 4 1 0 "" NA18994 nsv467271 1 192381020 192418858 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542608 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00542 dgv162e1 1 192535421 192851111 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv790,essv3111 M 271 0 0 "" NA18969 nsv8646 1 192539032 192548178 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24293,nssv23700,nssv24008,nssv27935,nssv26389 M 31 0 5 Samples from several populations that are part of the HapMap project. "" NA18564,NA18942,NA18972,NA18975,NA19240 nsv520252 1 192562687 192603952 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv685236,nssv679938,nssv682532,nssv662120,nssv705379,nssv701920 M 2026 0 6 "" nsv467284 1 192563910 192600780 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542621 S 1557 0 1 "" 1780854128_A nsv8658 1 192564301 192567404 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23387 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18860 nsv8669 1 192584855 192588133 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27297 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19221 dgv55n27 1 192584876 192603952 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv467317,nsv467328 M 1557 0 2 "" 1780854401_A,HGDP01226 nsv525153 1 192598107 192662653 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701225 S 2026 1 0 "" esv35094 1 192606000 192752000 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6987036,essv6980209,essv6980210 M 771 1 0 "" NA18969 essv3604 1 192622899 192752192 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18969 nsv467339 1 192644236 192850967 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542658 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01267 nsv516448 1 192660206 192660873 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv658551,nssv676919,nssv668468 M 2026 3 0 "" nsv525903 1 192660873 192662653 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702107 S 2026 1 0 "" essv25108 1 192669359 192673684 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12814 dgv163e1 1 192671486 192672977 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv6058,essv21362 M 271 0 0 "" NA10860,NA18603 essv18802 1 192671486 192673684 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12248 nsv467350 1 192681940 192723290 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542668 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01238 nsv467361 1 192704944 192735432 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542677 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01330 nsv8680 1 192735688 192743105 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22437 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19132 nsv3988 1 192744168 192778710 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3621 S 9 1 0 "" NA12878 nsv832237 1 192937331 193060157 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441606 S 95 1 0 "" nsv469680 1 192991503 193150673 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649611 M 265 1 12 Samples from several populations that are part of the HapMap project. "" nsv508685 1 193255687 193282637 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618997 S 4 0 1 "" NA10860 nsv528460 1 193274224 194178359 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705062 S 2026 1 0 "" dgv164e1 1 193322494 193544439 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv24041,essv18966 M 271 0 0 "" NA10859,NA12005 esv743 1 193322494 193901429 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent + Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 "" nsv818733 1 193373890 193391918 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417376 S 112 1 0 "" NA18944 nsv818744 1 193383489 193391918 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418249 S 112 1 0 "" NA19092 nsv469810 1 193401167 193548028 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649831 M 265 0 3 Samples from several populations that are part of the HapMap project. "" nsv471614 1 193401168 193686887 CNV Gain+Loss Sharp et al 2005 15918152 BAC_aCGH,FISH Eichler Segmental Duplication BAC array nssv549513,nssv549511,nssv549502,nssv549506,nssv549505,nssv549512,nssv549501,nssv550686,nssv550687,nssv549503,nssv549507,nssv550688,nssv549504,nssv550689,nssv549508,nssv549510,nssv549509 M 48 2 11 "" JK1051,JK1058,JK1061,JK776,NA10469,NA10470,NA10471,NA10472,NA10493,NA10496,NA15729,NA17014,P86GA dgv165e1 1 193424505 193574828 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv16638,essv582,essv16118,essv10557,essv856,essv24463,essv9086,essv9847,essv54,essv2821,essv11512,essv19871,essv23052,essv24414,essv12059,essv4653,essv12577,essv15828,essv24869,essv12109,essv11293,essv8977,essv9691,essv17884,essv17128,essv22379,essv9517,essv10029,essv21525,essv10333,essv18122 M 271 0 0 "" NA07000,NA11881,NA11993,NA12003,NA12056,NA12707,NA12812,NA12873,NA12875,NA18506,NA18521,NA18594,NA18863,NA18913,NA18987,NA18991,NA18998,NA19000,NA19098,NA19099,NA19100,NA19132,NA19139,NA19142,NA19144,NA19171,NA19173,NA19223,NA19238,NA19240 dgv166e1 1 193424505 193693459 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv5403,essv15721,essv22902,essv5527,essv22036,essv6144,essv12171,essv9217,essv16415,essv17545,essv2000,essv23383,essv11283,essv4058,essv19423,essv2969,essv17743,essv10633,essv23965,essv19522,essv1173,essv16752,essv4686,essv6595,essv2874,essv5234,essv20000,essv16922,essv389 M 271 0 0 "" NA07048,NA10831,NA11840,NA12154,NA12750,NA12760,NA12762,NA12814,NA12864,NA18529,NA18532,NA18563,NA18621,NA18622,NA18624,NA18635,NA18855,NA18872,NA18949,NA18951,NA18953,NA18971,NA18981,NA19101,NA19128,NA19131,NA19139,NA19144,NA19204 dgv167e1 1 193440880 193533269 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv25131,essv12896,essv15157,essv11332,essv8002,essv11072,essv14840,essv25164,essv10514,essv15974,essv16577,essv17396,essv14957,essv18518,essv13991,essv20529,essv8897,essv17360,essv24614,essv14227,essv16182 M 271 0 0 "" NA10856,NA11839,NA12716,NA12763,NA12875,NA18506,NA18517,NA18522,NA18855,NA18913,NA19098,NA19119,NA19128,NA19132,NA19138,NA19142,NA19143,NA19171,NA19193,NA19210,NA19221 dgv168e1 1 193440880 193648016 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv13235,essv19727,essv8588,essv6214,essv13407,essv6527,essv25182,essv5655,essv752,essv3443,essv12151 M 271 0 0 "" NA10859,NA11840,NA18505,NA18526,NA18563,NA18611,NA18872,NA18956,NA19003,NA19130,NA19131 nsv8691 1 193442421 193659555 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24893,nssv28153,nssv22750,nssv22765,nssv23059,nssv22757,nssv27417,nssv24302,nssv27036,nssv19768,nssv26732,nssv21396,nssv20739,nssv21400,nssv23697,nssv26872,nssv23369,nssv19760,nssv21399,nssv23998,nssv23083,nssv26558,nssv24583,nssv22095,nssv21761,nssv20755,nssv24592,nssv21069,nssv19438,nssv21760,nssv21066,nssv20090,nssv26721,nssv26562,nssv24295,nssv23075,nssv25173,nssv25453,nssv23393,nssv26385,nssv24898,nssv27529,nssv26717,nssv21395,nssv22422,nssv27639,nssv26851,nssv22745,nssv28018,nssv24001,nssv28103 M 31 15 10 Samples from several populations that are part of the HapMap project. "" NA07048,NA10847,NA10863,NA11830,NA12155,NA12740,NA12802,NA12872,NA18502,NA18517,NA18537,NA18563,NA18564,NA18572,NA18853,NA18860,NA18942,NA18972,NA18975,NA18980,NA19132,NA19144,NA19173,NA19221,NA19240 nsv517662 1 193442724 193669193 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv653014,nssv690860,nssv670751,nssv683039,nssv686247,nssv659463,nssv661866,nssv686478,nssv691800,nssv691995,nssv667817,nssv675277,nssv682340,nssv661312,nssv672206,nssv654208,nssv683833,nssv686574,nssv691893,nssv658360,nssv657391,nssv654895,nssv672958,nssv672723,nssv682460,nssv685788,nssv672882,nssv667636,nssv662553,nssv688785,nssv680731,nssv660285,nssv673551,nssv670627,nssv683875,nssv654942,nssv672799,nssv675192,nssv682278,nssv671425,nssv681886,nssv654398,nssv690089,nssv680461,nssv665964,nssv660533,nssv662918,nssv683794,nssv687921,nssv654769,nssv693421,nssv682511,nssv666065,nssv693684,nssv683373,nssv651925,nssv680789,nssv663103,nssv661893,nssv681662,nssv654982,nssv672822,nssv683756,nssv690431,nssv690907,nssv689994,nssv680369,nssv668575,nssv693393,nssv674229,nssv701939,nssv655141,nssv659933,nssv672911,nssv652755,nssv676069,nssv662830,nssv691509,nssv688588,nssv666917,nssv663315,nssv656134,nssv671682,nssv668873,nssv677519,nssv678800,nssv658117,nssv684708,nssv656959,nssv692864,nssv681618,nssv668040,nssv668121,nssv678060,nssv682103,nssv663228,nssv673198,nssv656317,nssv692982,nssv665742,nssv654746,nssv676100,nssv683502,nssv667438 M 2026 7 97 "" nsv471393 1 193445001 193471023 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548200,nssv548189 M 3 "" nsv3999 1 193449132 193652717 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9650,nssv4885,nssv9383,nssv10420,nssv2644,nssv6046 M 9 0 6 "" NA12156,NA18507,NA18517,NA18555,NA18956,NA19129 nsv433191 1 193454704 193502782 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463072 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA18517 nsv442555 1 193462692 193533729 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv169e1 1 193462805 193509374 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv13314,essv8031 M 271 0 0 "" NA18507,NA18871 dgv170e1 1 193462805 193571087 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv18545,essv13259,essv12084,essv14667,essv2931,essv14254,essv9542,essv22279,essv12879 M 271 0 0 "" NA11993,NA12762,NA18502,NA18861,NA19007,NA19099,NA19100,NA19145,NA19201 dgv11e55 1 193462805 193633410 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv34299,esv34289,esv34607,esv34652,esv34753,esv34776,esv34943,esv35037,esv35048 M 771 0 9 "" NA18503,NA18505,NA18526,NA18563,NA18611,NA18956,NA19003,NA19130,NA19131 dgv12e55 1 193462805 193743234 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv34978,esv2750822 M 771 2 0 "" NA11840,SPC_165 essv8557 1 193462805 193797731 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18503 essv23762 1 193462830 193489871 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA11994 dgv13e55 1 193464790 193633410 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv2750825,esv2750824,esv2750823 M 771 3 0 "" BEC_438,BEC_594,SPC_143 nsv437261 1 193467283 193475584 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467142 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18503 nsv437262 1 193467283 193493774 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467143 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18857 esv33169 1 193470583 193554590 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101573,essv98798,essv97607,essv93838,essv100729,essv96759,essv101073,essv98311,essv94806,essv94055,essv96901,essv95648,essv101670,essv95851,essv98944,essv92674,essv93768,essv97259,essv100092,essv93432,essv99733,essv96507,essv99280,essv100574,essv100316,essv99385,essv98346,essv96365 M 51 6 22 "" 21603,21606,21616,21634,21656,21659,21693,21772,21791,21802,21817,21841,21909,21911,21938,21944,21972,22075,22086,22128,22217,22261,22275,22298,22300,22335,22352,22371 nsv471352 1 193475587 193494529 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548050,nssv548051 M 3 "" nsv482141 1 193475587 193494529 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558502 S 1 1 0 "" KB1 nsv159564 1 193510849 193510849 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178142 M 24 "" dgv3n31 1 193513754 193622002 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis nsv471415,nsv471404 M 3 "" nsv437324 1 193519401 193527897 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467205 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA10851 nsv471353 1 193520518 193532973 CNV Complex Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548054,nssv548053,nssv548052 M 3 "" nsv482142 1 193520518 193532973 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558503 S 1 1 0 "" KB1 nsv438126 1 193524125 193524866 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv469663,nssv469607,nssv469618,nssv469763,nssv469652,nssv469696,nssv469685,nssv469752,nssv469774,nssv469596,nssv469630,nssv469674,nssv469707,nssv469718,nssv469729,nssv469585,nssv469641,nssv469741 M 269 0 18 Samples from several populations that are part of the HapMap project. "" NA18500,NA18502,NA18503,NA18505,NA18521,NA18523,NA18852,NA18854,NA18862,NA18863,NA19102,NA19103,NA19140,NA19142,NA19152,NA19154,NA19159,NA19161 nsv437335 1 193524866 193534164 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467216 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA12753 nsv469599 1 193528133 193686887 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649715 M 265 0 20 Samples from several populations that are part of the HapMap project. "" dgv171e1 1 193528134 193693459 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv10137,essv14976,essv2513,essv17257 M 271 0 0 "" NA18503,NA18870,NA19003,NA19130 nsv467372 1 193554687 193557520 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542686 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01238 nsv467383 1 193554687 193598890 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542693 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00928 dgv56n27 1 193554687 193628745 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv467439,nsv467461,nsv467494,nsv467517,nsv467428,nsv467661,nsv467605,nsv467483,nsv467472,nsv467450,nsv467406 M 1557 11 0 "" HGDP00288,HGDP00392,HGDP00898,HGDP00977,HGDP01217,HGDP01228,HGDP01236,HGDP01242,HGDP01247,HGDP01349,NINDS_159 nsv818755 1 193554687 193628745 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417741 S 112 0 1 "" NA19003 dgv57n27 1 193554687 193651805 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv467761,nsv467583,nsv467639,nsv467794,nsv467572,nsv467705,nsv467550,nsv467883,nsv467827,nsv467694,nsv467650,nsv467805,nsv467683,nsv467672,nsv467539,nsv467716,nsv467561,nsv467783,nsv467739,nsv467628,nsv467617,nsv467872,nsv467728,nsv467395,nsv467594,nsv467417,nsv467816,nsv467528,nsv467506,nsv467750 M 1557 0 30 "" 1780854017_A,1780854391_A,1780854449_A,1780854535_A,1780862085_A,1780862379_A,1782681099_A,1782681176_A,1798860292_A,HGDP00218,HGDP00455,HGDP00479,HGDP00624,HGDP00741,HGDP00755,HGDP00756,HGDP00894,HGDP00952,HGDP00961,HGDP01033,HGDP01081,HGDP01094,HGDP01311,HGDP01367,NINDS_167,NINDS_173,NINDS_186,NINDS_245,NINDS_259,NINDS_92 dgv58n27 1 193554687 193664902 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv467772,nsv467839,nsv467850 M 1557 3 0 "" HGDP00457,HGDP01041,NINDS_235 nsv442558 1 193554974 193633406 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" esv34855 1 193555000 193618427 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6988279,essv6979964,essv6979965 M 771 0 1 "" NA18870 essv14815 1 193555270 193618427 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18870 essv21109 1 193555270 193648016 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA10854 nsv467861 1 193557285 193569717 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543002 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01418 nsv467905 1 193584438 193625983 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543042 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00951 nsv471354 1 193588869 193619419 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548057,nssv548055 M 3 "" nsv524689 1 193673150 193678432 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700661 S 2026 0 1 "" nsv8702 1 193675509 193686232 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23703 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19132 essv19099 1 193709456 193901429 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA07055 nsv521647 1 194196105 194260875 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698265 S 2026 1 0 "" nsv4010 1 194203120 194243054 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2654 S 9 0 1 "" NA18555 nsv437263 1 194330687 194453897 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467144 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19221 nsv522400 1 194458955 194464712 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695180 S 2026 0 1 "" nsv506971 1 194619426 194625426 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619257,nssv617545 M 4 2 0 "" CHM,NA10860 nsv832248 1 194879533 195059424 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441609,nssv1441608 M 95 1 1 "" nsv4021 1 195034040 195047383 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10427 S 9 0 1 "" NA18956 nsv160045 1 195036438 195036438 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178623 M 24 "" nsv832259 1 195121888 195261854 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441610,nssv1441611 M 95 2 0 "" nsv4032 1 195148569 195183631 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv425 S 9 1 0 "" NA19240 nsv509579 1 195193123 195193123 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621108 S 4 1 0 "" NA15510 nsv4043 1 195203914 195230265 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9656,nssv2664,nssv10430,nssv3628,nssv9386,nssv11145 M 9 6 0 "" NA12878,NA15510,NA18507,NA18517,NA18555,NA18956 nsv113 1 195204270 195219646 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv113 S 1 1 0 "" NA15510 nsv509591 1 195205642 195218901 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623807 S 4 1 0 "" NA18994 nsv159683 1 195262759 195262759 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178261 M 24 "" nsv528451 1 195296154 195308920 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705050 S 2026 0 1 "" nsv521385 1 195483058 195489018 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697995 S 2026 0 1 "" nsv508686 1 195592665 195601301 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622784 S 4 0 1 "" NA18994 nsv441732 1 195680256 195688242 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv467927 1 195765419 195818752 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543063 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00623 nsv467938 1 195811798 195828934 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543074 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01213 nsv437264 1 195818752 195847249 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467145 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18521 nsv521674 1 195821887 195822796 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698292 S 2026 0 1 "" nsv526650 1 195821887 195823356 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702976 S 2026 0 1 "" nsv442564 1 195843083 195845497 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv5n68 1 195885299 196138537 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH nsv832270,nsv832281 M 95 2 0 "" nsv525766 1 195923133 195925546 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701934 S 2026 0 1 "" nsv524123 1 196079880 196089169 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700001 S 2026 0 1 "" nsv467950 1 196203273 196315694 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543086 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01368 nsv520149 1 196273427 196277064 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv661215,nssv682148 M 2026 0 2 "" esv33996 1 196361940 196362317 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93482,essv99243 M 51 2 0 "" 22128,22275 nsv832292 1 196372839 196533932 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441614 S 95 1 0 "" esv33225 1 196497928 196497989 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93982 S 51 0 1 "" 21802 nsv832303 1 196505504 196668013 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441615 S 95 0 1 "" nsv520569 1 196595212 196595817 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv672672,nssv691689,nssv702515 M 2026 1 2 "" nsv161112 1 196775202 196775521 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv179690 M 24 "" nsv437265 1 196821876 196840203 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467146 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19221 nsv506972 1 196842653 196848653 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623289,nssv617546,nssv620675,nssv619258 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 dgv23n21 1 197031956 197063862 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv520089,nsv527560 M 2026 2 0 "" nsv518035 1 197055820 197096530 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695445 S 2026 0 1 "" dgv172e1 1 197239167 197328634 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv25107,esv1000 M 271 0 0 "" NA12814 nsv160731 1 197389823 197399630 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv179309 M 24 "" nsv528910 1 197494699 197558426 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705595 S 2026 0 1 "" nsv518356 1 197523611 197543422 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695783 S 2026 0 1 "" esv33174 1 197558830 197727389 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97928 S 51 0 1 "" 21837 nsv506973 1 197574044 197580044 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623290 S 4 1 0 "" NA18994 nsv4054 1 197726167 197752578 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv434 S 9 1 0 "" NA19240 nsv515571 1 197810745 197813600 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv685282,nssv663935 M 2026 0 2 "" nsv518716 1 197915059 197915430 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696167 S 2026 0 1 "" nsv515827 1 197944493 197948805 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv664909,nssv675865,nssv673889,nssv662306,nssv692309,nssv654896 M 2026 2 4 "" nsv520734 1 197949999 197965408 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697581 S 2026 0 1 "" nsv520413 1 197953459 197954575 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv671283,nssv682834 M 2026 0 2 "" nsv467961 1 198017369 198235389 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543097 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00456 nsv832315 1 198065248 198226773 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441616 S 95 0 1 "" nsv832326 1 198076505 198176672 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441617,nssv1441619 M 95 0 2 "" nsv508687 1 198081635 198158309 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622785 S 4 0 1 "" NA18994 nsv4065 1 198115341 198149856 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3637 S 9 1 0 "" NA12878 nsv522795 1 198119805 198120956 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698439 S 2026 0 1 "" nsv520939 1 198235012 198235389 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694408 S 2026 0 1 "" nsv4077 1 198239665 198272516 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4886 S 9 1 0 "" NA19129 esv33114 1 198249827 198300273 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99789 S 51 1 0 "" 22086 nsv527756 1 198293332 198296566 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704243 S 2026 0 1 "" nsv818766 1 198368381 198399519 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417518 S 112 0 1 "" NA18968 nsv159766 1 198557315 198557315 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178344 M 24 "" nsv521567 1 198592283 198620626 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698184 S 2026 0 1 "" nsv4088 1 198618753 198629867 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2739 S 9 1 0 "" NA18555 nsv159297 1 198648011 198653926 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv177875 M 24 "" nsv161136 1 198665412 198668302 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv179714 M 24 "" nsv516812 1 198709484 198718075 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697276,nssv671101,nssv662957 M 2026 0 3 "" nsv522841 1 198851391 199012663 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698493 S 2026 1 0 "" nsv467972 1 198860769 198885240 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543108 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00136 nsv433192 1 199069912 199117577 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463073 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA19129 nsv159751 1 199092700 199092939 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178329 M 24 "" nsv471538 1 199164001 199260536 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv547946,nssv547948,nssv547947 M 3 "" nsv516501 1 199201380 199278758 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv668714,nssv677317,nssv680690,nssv705448 M 2026 4 0 "" nsv832337 1 199228344 199410605 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441624,nssv1441621,nssv1441627,nssv1441626,nssv1441623,nssv1441622,nssv1441625,nssv1441620 M 95 0 8 "" dgv173e1 1 199299046 199455863 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv86,essv11715 M 271 0 0 "" NA19154 nsv4099 1 199340077 199368287 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7953 S 9 1 0 "" NA12156 nsv832348 1 199342073 199513819 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441628 S 95 0 1 "" nsv7186 1 199375168 199400221 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6062 S 9 0 0 "" NA12156 nsv832359 1 199440073 199619651 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441631 S 95 0 1 "" nsv4110 1 199488297 199521343 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7966 S 9 1 0 "" NA12156 nsv521757 1 199512187 199512821 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694524 S 2026 0 1 "" nsv4121 1 199667493 199705730 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7971 S 9 0 1 "" NA12156 nsv832370 1 199697976 199896890 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441632 S 95 0 1 "" nsv4132 1 199712420 199740525 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3648 S 9 1 0 "" NA12878 nsv467983 1 199737755 199779278 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543119 S 1557 0 1 "" NINDS_200 nsv522340 1 199751307 199756424 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694157 S 2026 0 1 "" nsv519378 1 199754779 199756424 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696822 S 2026 0 1 "" nsv4143 1 199756823 199764188 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7975 S 9 0 1 "" NA12156 nsv521682 1 199814468 199815665 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698302 S 2026 0 1 "" nsv523111 1 199897038 199900538 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698809 S 2026 0 1 "" esv33921 1 199897831 199898242 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv95025 S 51 0 1 "" 22231 nsv527064 1 199941138 199971961 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703443 S 2026 0 1 "" nsv467994 1 200412149 200466642 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543130 S 1557 0 1 "" 1780862401_A nsv520482 1 200499985 200532083 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv677636,nssv676246,nssv692396,nssv671804,nssv679660 M 2026 0 5 "" nsv522989 1 200501548 200556445 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698659 S 2026 0 1 "" nsv525331 1 200644095 200649842 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701442 S 2026 0 1 "" nsv441733 1 200669515 200677055 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv520522 1 200829516 200831040 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697467 S 2026 0 1 "" nsv528249 1 200896348 200897700 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704815 S 2026 0 1 "" nsv818778 1 201054592 201086901 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417713 S 112 1 0 "" NA18999 nsv525847 1 201091254 201097406 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702041 S 2026 0 1 "" nsv522489 1 201097406 201102071 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705856 S 2026 0 1 "" nsv516276 1 201132440 201135316 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv685629,nssv667277,nssv662853,nssv659349 M 2026 0 4 "" nsv4154 1 201256915 201320859 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4904,nssv3667 M 9 2 0 "" NA12878,NA19129 nsv506974 1 201392160 201398160 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619259 S 4 1 0 "" NA10860 nsv524853 1 201493014 201504394 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700856 S 2026 0 1 "" nsv521899 1 201608623 201612995 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694670 S 2026 0 1 "" nsv4165 1 201685289 201717387 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10450 S 9 1 0 "" NA18956 nsv468016 1 201815777 201894714 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543151 S 1557 0 1 "" NINDS_159 nsv832381 1 201991026 202180373 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441633 S 95 1 0 "" nsv525872 1 201992831 201994961 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702072 S 2026 0 1 "" nsv4176 1 202166231 202200667 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2745 S 9 1 0 "" NA18555 nsv509602 1 202179624 202265310 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619821 S 4 1 0 "" NA10860 nsv468027 1 202202493 202231358 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543162 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00973 nsv159784 1 202264247 202264247 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178362 M 24 "" nsv4188 1 202326236 202360056 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv444 S 9 1 0 "" NA19240 nsv529048 1 202352826 202353932 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705766 S 2026 1 0 "" nsv509613 1 202571682 202926022 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623809 S 4 1 0 "" NA18994 nsv832392 1 202583150 202645690 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441634 S 95 1 0 "" nsv832403 1 202651264 202783814 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441639,nssv1441638,nssv1441637,nssv1441636,nssv1441635,nssv1441640 M 95 6 0 "" nsv832414 1 202712362 202815020 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441643,nssv1441642 M 95 2 0 "" nsv4199 1 202825595 202840736 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3677,nssv6088,nssv2749 M 9 3 0 "" NA12156,NA12878,NA18555 nsv160541 1 203088022 203097412 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv179119 M 24 "" nsv4210 1 203215042 203228240 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3686 S 9 1 0 "" NA12878 nsv8713 1 203245018 203248158 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23063,nssv21756,nssv23679,nssv22091,nssv24284,nssv27015 M 31 6 0 Samples from several populations that are part of the HapMap project. "" NA07048,NA10863,NA11830,NA12155,NA12872,NA18504 nsv521261 1 203419380 203424042 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697873 S 2026 0 1 "" nsv468049 1 203456235 203525733 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543183 S 1557 0 1 "" NINDS_21 nsv832426 1 203523924 203691211 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441644 S 95 1 0 "" nsv526285 1 203524386 203531909 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702564 S 2026 0 1 "" nsv526699 1 203624919 203632246 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703038 S 2026 0 1 "" nsv4221 1 203915167 203945952 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2665,nssv4924 M 9 0 2 "" NA18555,NA19129 nsv508688 1 203918608 203942844 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620145 S 4 0 1 "" NA15510 nsv506975 1 203926070 203932070 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617547,nssv623291 M 4 2 0 "" CHM,NA18994 dgv174e1 1 203946290 204141479 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv23368,essv9605,essv16056 M 271 0 0 "" NA12750,NA18501,NA19141 dgv175e1 1 203946290 204313462 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv22148,essv20595,esv387,essv20075 M 271 0 0 "" NA07048,NA07056,NA10857 nsv508690 1 204066136 204158829 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622786,nssv617393,nssv618998,nssv620146 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv4232 1 204078017 204149527 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv11178,nssv6098,nssv453,nssv2681,nssv4934,nssv9670,nssv9390,nssv3695 M 9 0 8 "" NA12156,NA12878,NA15510,NA18507,NA18517,NA18555,NA19129,NA19240 nsv124 1 204085269 204127721 CNV Loss Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv124 S 1 0 1 "" NA15510 nsv8724 1 204085310 204140099 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23385,nssv23068,nssv24292,nssv23373 M 31 3 1 Samples from several populations that are part of the HapMap project. "" NA11830,NA18502,NA18572,NA18860 nsv471426 1 204085341 204140002 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548267,nssv548256,nssv548278 M 3 "" esv33009 1 204125019 204136497 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100774,essv93993,essv97688 M 51 1 2 "" 21656,21802,22278 nsv8735 1 204210088 204216844 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24585,nssv21759,nssv25712,nssv22425 M 31 4 0 Samples from several populations that are part of the HapMap project. "" NA12740,NA18537,NA18563,NA18975 nsv8746 1 204228648 204236270 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20420,nssv24582,nssv26857,nssv23378,nssv27747 M 31 0 5 Samples from several populations that are part of the HapMap project. "" NA18502,NA18517,NA18853,NA18860,NA19221 nsv8757 1 204259910 204262347 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23683 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA11830 nsv4243 1 204423947 204456317 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv464 S 9 1 0 "" NA19240 nsv4254 1 204509851 204554565 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8005 S 9 0 1 "" NA12156 nsv4265 1 204523890 204569481 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6108,nssv2759 M 9 2 0 "" NA12156,NA18555 nsv4276 1 204621229 204645692 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3704 S 9 1 0 "" NA12878 nsv4287 1 204665733 204698717 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv475 S 9 1 0 "" NA19240 nsv832437 1 204687356 204848217 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441646,nssv1441645,nssv1441647 M 95 1 2 "" dgv14e55 1 204814103 204843574 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv2750826,esv2750827 M 771 2 0 "" BEC_494,BEC_520 dgv15e55 1 204831917 204843574 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv2750828,esv34329 M 771 2 0 "" NA12146,SPC_18 dgv176e1 1 204831917 204885513 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1395,essv20750 M 271 0 0 "" NA07357 nsv818789 1 204834195 204845317 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418343 S 112 1 0 "" NA12146 essv21567 1 204834754 204847486 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12146 nsv522684 1 204899200 204902123 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv706093 S 2026 0 1 "" nsv832448 1 204923806 205113631 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441648 S 95 1 0 "" nsv506976 1 205077938 205083938 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617548 S 4 1 0 "" CHM nsv7189 1 205162527 205206488 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6116 S 9 0 0 "" NA12156 nsv832459 1 205205425 205376725 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441649 S 95 1 0 "" nsv832470 1 205386773 205527686 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441650 S 95 1 0 "" nsv4299 1 205460534 205490965 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10460 S 9 1 0 "" NA18956 nsv438137 1 205510072 205514368 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv469818,nssv469807,nssv469896,nssv469885,nssv469907,nssv469929,nssv469918,nssv469852,nssv469840,nssv469874,nssv469796,nssv469829,nssv469785,nssv469863 M 269 0 13 Samples from several populations that are part of the HapMap project. "" NA06991,NA06993,NA10851,NA10857,NA10861,NA10863,NA11995,NA12044,NA12056,NA12234,NA12264,NA12740,NA12751 nsv522816 1 205713433 205731017 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698463 S 2026 0 1 "" dgv6n68 1 205759671 205977707 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH nsv832481,nsv832492 M 95 0 2 "" nsv4310 1 205777399 205810075 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6123 S 9 1 0 "" NA12156 nsv4321 1 206010196 206016805 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8033 S 9 0 1 "" NA12156 nsv4332 1 206101209 206134882 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2763 S 9 1 0 "" NA18555 nsv525445 1 206273713 206300988 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701573 S 2026 0 1 "" nsv4343 1 206318327 206363272 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8043 S 9 0 1 "" NA12156 nsv159698 1 206323731 206324471 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178276 M 24 "" nsv4354 1 206458969 206489178 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1685,nssv10467,nssv4940,nssv9397,nssv9676 M 9 0 5 "" NA18507,NA18517,NA18555,NA18956,NA19129 nsv160131 1 206466451 206474366 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178709 M 24 "" nsv442573 1 206470008 206472379 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv160698 1 206552270 206552270 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv179276 M 24 "" nsv818800 1 206647048 206692714 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417434 S 112 1 0 "" NA18952 nsv4365 1 206690585 206722701 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3719 S 9 1 0 "" NA12878 nsv468072 1 206692714 206726591 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543205 S 1557 0 1 "" 1780862001_A nsv526050 1 206769652 206774980 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702287 S 2026 0 1 "" nsv8769 1 206791904 206952983 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25158,nssv27021,nssv24574 M 31 3 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA18504,NA18517 dgv177e1 1 206967918 207009174 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv10494,essv8064,esv993,essv13970 M 271 0 0 "" NA19143,NA19160,NA19161 nsv515857 1 206992525 207002011 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv686153,nssv677861,nssv699524,nssv673890,nssv690432,nssv665032,nssv670153,nssv660922,nssv692528,nssv668526,nssv675250,nssv686575,nssv682738 M 2026 0 13 "" nsv818811 1 206992525 207002011 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418132,nssv1418133 M 112 0 2 "" NA19143,NA19145 nsv441734 1 206993141 207000919 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" essv14669 1 206993958 207008887 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19145 nsv4376 1 207016015 207060721 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8049 S 9 0 1 "" NA12156 nsv522480 1 207168331 207236739 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705847 S 2026 1 0 "" nsv523712 1 207178315 207178609 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699525 S 2026 0 1 "" nsv4387 1 207191293 207238706 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6133,nssv2770,nssv3728 M 9 3 0 "" NA12156,NA12878,NA18555 nsv509624 1 207205523 207226060 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623810,nssv617998,nssv619823,nssv621109 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv527699 1 207217843 207218715 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704177 S 2026 0 1 "" nsv468083 1 207243210 207264587 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543216 S 1557 0 1 "" NINDS_21 nsv506977 1 207277284 207283284 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620676,nssv617549,nssv619260 M 4 3 0 "" CHM,NA10860,NA15510 nsv832503 1 207337155 207491558 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441654 S 95 1 0 "" nsv520509 1 207410182 207429985 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697461 S 2026 0 1 "" nsv4398 1 207422977 207467512 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1686 S 9 0 1 "" NA18555 nsv524740 1 207531503 207544009 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700731 S 2026 0 1 "" nsv524860 1 207541091 207544009 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700864 S 2026 1 0 "" nsv4410 1 207582119 207598966 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8060 S 9 0 1 "" NA12156 nsv159013 1 207837950 207842145 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv177591 M 24 "" nsv508059 1 207933784 207939784 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618520 S 4 0 1 "" CHM nsv4421 1 208002834 208025531 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv489 S 9 1 0 "" NA19240 nsv832514 1 208018642 208183358 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441655 S 95 0 1 "" nsv506978 1 208424684 208430684 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620677,nssv617550 M 4 2 0 "" CHM,NA15510 nsv4432 1 208591556 208624741 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8070 S 9 1 0 "" NA12156 nsv506979 1 208607995 208613995 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619261 S 4 1 0 "" NA10860 nsv506980 1 208688418 208694418 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623292,nssv620678 M 4 2 0 "" NA15510,NA18994 nsv4443 1 208718401 208753331 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3738 S 9 1 0 "" NA12878 nsv518153 1 208733156 208733687 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695574 S 2026 0 1 "" dgv7n6 1 208859531 208861029 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv159922,nsv160540 M 24 "" nsv4454 1 208872708 208903987 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6144 S 9 1 0 "" NA12156 nsv527863 1 209005818 209089013 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704361 S 2026 0 1 "" nsv524329 1 209019788 209022978 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700235 S 2026 0 1 "" nsv519924 1 209019788 209027120 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697130 S 2026 0 1 "" dgv178e1 1 209036538 209231498 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv15,essv4506 M 271 0 0 "" NA18552 nsv8780 1 209044030 209047153 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21085 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18980 nsv4465 1 209227105 209260810 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv499 S 9 1 0 "" NA19240 nsv160457 1 209235655 209243157 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv179035 M 24 "" dgv179e1 1 209313824 209394792 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1347,essv23702 M 271 0 0 "" NA12740 nsv159271 1 209314641 209316506 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv177849 M 24 "" nsv508691 1 209386714 209416787 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617401 S 4 0 1 "" CHM nsv8791 1 209390492 209403239 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22753,nssv22086,nssv22089,nssv21755 M 31 0 4 Samples from several populations that are part of the HapMap project. "" NA10847,NA10863,NA12740,NA18537 nsv441735 1 209393410 209398831 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" esv32562 1 209394459 209397892 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93958 S 51 0 1 "" 21634 nsv508692 1 209697431 209719302 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620148 S 4 0 1 "" NA15510 nsv4476 1 209774124 209807232 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4941 S 9 1 0 "" NA19129 nsv508693 1 209794615 209810021 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620149 S 4 0 1 "" NA15510 nsv832525 1 209968871 210171210 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441656 S 95 1 0 "" nsv4487 1 209976966 210010046 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8083 S 9 1 0 "" NA12156 nsv524186 1 210025878 210030338 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700068 S 2026 0 1 "" nsv526119 1 210025878 210040543 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702369 S 2026 0 1 "" nsv520354 1 210034239 210040543 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv679184,nssv677183,nssv663143,nssv677840 M 2026 0 4 "" nsv526718 1 210040543 210042974 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703058 S 2026 0 1 "" nsv4498 1 210543201 210577957 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3747 S 9 1 0 "" NA12878 nsv516687 1 210947053 210948446 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv687122,nssv658406,nssv687846,nssv678447,nssv693734,nssv691566,nssv658990,nssv681847,nssv670154 M 2026 0 9 "" nsv468094 1 211043360 211076120 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543227 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00807 nsv160230 1 211184572 211184661 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178808 M 24 "" nsv441736 1 211241685 211243917 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv4509 1 211332299 211364325 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv518 S 9 1 0 "" NA19240 nsv523081 1 211387914 211395334 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698772 S 2026 0 1 "" nsv4521 1 211466358 211499791 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2771 S 9 1 0 "" NA18555 nsv160908 1 211655463 211655522 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv179486 M 24 "" dgv24n21 1 211784938 211790417 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv527715,nsv518732 M 2026 0 2 "" nsv4532 1 211831053 211853622 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3756 S 9 1 0 "" NA12878 nsv442576 1 211881864 211887499 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv832537 1 211897421 212093500 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441657 S 95 0 1 "" nsv4543 1 212101816 212123990 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4958,nssv527 M 9 2 0 "" NA19129,NA19240 nsv468116 1 212311255 212335803 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543248 S 1557 0 1 "" 1780854261_A nsv832548 1 212375484 212564119 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441658 S 95 1 0 "" nsv468127 1 212442481 212454832 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543259 S 1557 0 1 "" 1798860114_A nsv520724 1 212466159 212468550 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv689743,nssv674800 M 2026 0 2 "" nsv527176 1 212500603 212504103 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703572 S 2026 0 1 "" nsv4554 1 212801608 212834722 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8090 S 9 1 0 "" NA12156 nsv527827 1 212858502 212863937 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704323 S 2026 0 1 "" nsv523863 1 212906030 213017811 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699700 S 2026 0 1 "" nsv508060 1 213028278 213034278 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624230,nssv621487,nssv622304 M 4 0 3 "" NA10860,NA15510,NA18994 nsv4565 1 213108465 213153448 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4969 S 9 0 1 "" NA19129 nsv520098 1 213124533 213133994 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697222 S 2026 0 1 "" nsv468138 1 213124533 213150553 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543270 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00963 nsv508694 1 213289409 213312278 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620150 S 4 0 1 "" NA15510 nsv519715 1 213386550 213386859 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv687144,nssv673840,nssv662240,nssv657827,nssv684665,nssv677804,nssv681456,nssv681070,nssv673273,nssv693422,nssv691301,nssv680732,nssv681208,nssv662419 M 2026 0 14 "" nsv520457 1 213490456 213490867 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv671621,nssv691640 M 2026 0 2 "" nsv521019 1 213616511 213618069 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv679966,nssv682412 M 2026 0 2 "" nsv160531 1 213658354 213658418 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv179109 M 24 "" nsv525040 1 213672268 213673704 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701084 S 2026 0 1 "" nsv441737 1 213678520 213682723 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv59n27 1 213706990 213713049 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv468172,nsv468160 M 1557 0 2 "" HGDP01013,HGDP01015 nsv4576 1 213723953 213755096 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10481 S 9 1 0 "" NA18956 nsv832559 1 213867196 214044040 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441659,nssv1441660 M 95 0 2 "" nsv832570 1 213964376 214138313 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441661 S 95 1 0 "" nsv528685 1 213981340 213981665 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705328 S 2026 1 0 "" nsv832581 1 214023024 214176428 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441672,nssv1441662,nssv1441671,nssv1441664,nssv1441670,nssv1441665,nssv1441668,nssv1441669,nssv1441667,nssv1441666 M 95 9 1 "" nsv159790 1 214142470 214142772 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178368 M 24 "" nsv468183 1 214277367 214281285 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543314 S 1557 0 1 "" 1780854017_A nsv523504 1 214414972 214425212 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699275 S 2026 0 1 "" nsv506981 1 214554242 214560242 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623293,nssv620679,nssv619262,nssv617551 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv4587 1 214556377 214603936 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3771,nssv9907,nssv6154,nssv1705,nssv11183 M 9 0 5 "" NA12156,NA12878,NA15510,NA18507,NA18555 nsv508695 1 214569098 214586146 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622787,nssv617411,nssv618999,nssv620151 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv135 1 214569523 214603936 CNV Loss Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv135 S 1 0 1 "" NA15510 esv33696 1 214585732 214592324 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100641 S 51 1 0 "" 21656 nsv8802 1 214590276 214595242 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23984 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA11830 nsv832592 1 214597449 214777098 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441673 S 95 1 0 "" nsv515726 1 214642207 214785975 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv658847,nssv664587 M 2026 0 2 "" esv35038 1 214805915 214812000 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6980644,essv6987828 M 771 0 1 "" NA19240 nsv441738 1 214806647 214811535 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv4598 1 214869544 214904826 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8107 S 9 0 1 "" NA12156 nsv832603 1 214925748 215087104 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441675 S 95 1 0 "" nsv4609 1 215041305 215074651 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4970 S 9 1 0 "" NA19129 nsv528696 1 215077550 215094156 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705341 S 2026 0 1 "" nsv832614 1 215448615 215625015 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441676 S 95 1 0 "" nsv525059 1 215476560 215483777 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701109 S 2026 0 1 "" dgv25n21 1 215739251 215756357 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv520564,nsv527700 M 2026 0 2 "" nsv4620 1 215761436 215806194 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8111 S 9 0 1 "" NA12156 nsv832625 1 216025436 216214393 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441677 S 95 0 1 "" nsv160852 1 216311704 216312021 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv179430 M 24 "" nsv160622 1 216462752 216462752 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv179200 M 24 "" nsv832636 1 216528092 216682747 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441678 S 95 0 1 "" nsv4632 1 216603264 216638589 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv545 S 9 1 0 "" NA19240 nsv4643 1 216786037 216830626 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1706 S 9 0 1 "" NA18555 nsv523114 1 216874744 216889353 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698813 S 2026 0 1 "" nsv508061 1 217088966 217094966 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622305,nssv618521,nssv621489,nssv624231 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv468194 1 217234005 217274007 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543325 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01214 nsv160470 1 217307410 217311174 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv179048 M 24 "" nsv523389 1 217315239 217344407 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699139 S 2026 0 1 "" nsv4654 1 217571371 217592809 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3781 S 9 1 0 "" NA12878 nsv159143 1 217603284 217604388 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv177721 M 24 "" nsv441739 1 218134445 218142004 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv506982 1 218143076 218149076 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619263,nssv623294 M 4 2 0 "" NA10860,NA18994 nsv469786 1 218244266 218428730 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649807 M 265 0 0 Samples from several populations that are part of the HapMap project. "" nsv518321 1 218441629 218443798 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695751 S 2026 1 0 "" nsv4665 1 218475070 218508856 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8123 S 9 1 0 "" NA12156 nsv4676 1 218582647 218616840 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8131 S 9 1 0 "" NA12156 nsv832648 1 218620788 218773724 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441679 S 95 0 1 "" nsv160691 1 218651918 218651918 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv179269 M 24 "" dgv180e1 1 218684362 218846708 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv21029,essv408,essv17938,esv77,essv17497,essv23431 M 271 0 0 "" NA06991,NA10854,NA12003,NA12762,NA18971 nsv521614 1 218691542 218706036 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698232 S 2026 0 1 "" nsv508696 1 218755935 218786341 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620153 S 4 0 1 "" NA15510 nsv8813 1 218762212 218771750 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28203,nssv24907,nssv26707,nssv24897,nssv23392,nssv24278,nssv23071,nssv25957,nssv27847,nssv27151,nssv22085,nssv24004,nssv20750,nssv25178,nssv24900 M 31 13 2 Samples from several populations that are part of the HapMap project. "" NA10839,NA10847,NA11830,NA18517,NA18537,NA18563,NA18853,NA18860,NA18942,NA18972,NA18975,NA19007,NA19132,NA19221,NA19240 nsv8824 1 218772732 218778280 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27281,nssv22754 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18517,NA18552 nsv442589 1 219405720 219411999 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv159885 1 219593095 219593173 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178463 M 24 "" nsv832659 1 219666546 219810266 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441680 S 95 1 0 "" nsv516810 1 219840115 219840511 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv674189,nssv692956,nssv659350,nssv671082 M 2026 4 0 "" nsv518979 1 219840115 219860089 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696446 S 2026 1 0 "" nsv832670 1 219933550 220055160 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441681 S 95 0 1 "" nsv4687 1 219936859 219982141 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4989 S 9 0 1 "" NA19129 nsv517708 1 219939046 219939582 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv684089,nssv663272,nssv658315,nssv679393,nssv656191,nssv669588,nssv683331,nssv656875,nssv687388,nssv652917,nssv674072,nssv671037,nssv680691,nssv662997,nssv676838,nssv681071,nssv674673,nssv677711,nssv660426,nssv657651,nssv688017,nssv654747,nssv656993 M 2026 0 23 "" nsv818822 1 219986517 220003824 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417824 S 112 1 0 "" NA18852 nsv518381 1 219990546 220017035 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695812 S 2026 1 0 "" dgv181e1 1 220000153 220016185 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1365,essv9308 M 271 0 0 "" NA18852 nsv521539 1 220000209 220013219 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698155 S 2026 1 0 "" nsv520420 1 220053830 220064941 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697405 S 2026 0 1 "" nsv832681 1 220069827 220309426 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441682 S 95 1 0 "" nsv437346 1 220210516 220212267 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467227 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA10856 nsv520609 1 220238146 220253816 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv673218,nssv675983 M 2026 0 2 "" nsv521758 1 220238146 220260815 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694525 S 2026 0 1 "" essv335 1 220241955 220431365 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18971 dgv182e1 1 220241955 220669898 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv7162,essv19189,esv71,essv19437,essv2059 M 271 0 0 "" NA11840,NA12865,NA18547,NA18949 nsv4698 1 220264944 220281956 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3790 S 9 1 0 "" NA12878 nsv522556 1 220368633 220382218 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705938 S 2026 0 1 "" nsv8835 1 220383037 220403201 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22090,nssv23688 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA12802,NA18502 essv6404 1 220488331 220669898 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18572 nsv832692 1 220513271 220714452 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441683 S 95 1 0 "" nsv160722 1 220560549 220560866 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv179300 M 24 "" nsv8846 1 220569448 220571700 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22416,nssv27166,nssv20098,nssv24568,nssv22419,nssv22420,nssv22421,nssv27401,nssv25438 M 31 9 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA10863,NA11830,NA12740,NA12802,NA12872,NA18517,NA19144,NA19173 nsv8857 1 220666678 220689758 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28253 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18972 nsv8868 1 220689758 221059266 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20428 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19144 nsv161004 1 220699570 220699882 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv179582 M 24 "" nsv469889 1 220747089 220941109 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649910 M 265 0 0 Samples from several populations that are part of the HapMap project. "" nsv508062 1 220882929 220888929 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624232 S 4 0 1 "" NA18994 nsv160255 1 220886804 220896108 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178833 M 24 "" nsv524125 1 221208789 221328595 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700003 S 2026 1 0 "" nsv527809 1 221352563 221355482 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704303 S 2026 0 1 "" dgv183e1 1 221394659 221560009 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv22342,esv489 M 271 0 0 "" NA06985 nsv526708 1 221536601 221579983 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703047 S 2026 0 1 "" nsv524461 1 221611066 221654424 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700395 S 2026 1 0 "" nsv524233 1 221646976 221654424 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700123 S 2026 0 1 "" nsv832703 1 221682688 221826951 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441684 S 95 1 0 "" dgv184e1 1 221711686 221833513 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv3201,essv12371,essv14545,essv1890,essv2975,essv17188,essv2611,essv6325,essv5590,essv1168,essv18608,essv7015,essv13651,essv2207,essv15096,essv24393,essv12309,essv16499,essv18418,essv5813,essv6131,essv19698,essv8095,essv4395,essv14272,essv7077,essv11278,essv13741,essv10095,essv4794,essv9647,essv11692,essv24862,essv5125,esv110,essv11165,essv17569,essv19274,essv23459,essv17837,essv11794,essv4296,essv12962,essv23908,essv15658,essv16224,essv15325,essv20019,essv17096,essv17712,essv15601,essv22510,essv18744,essv1464,essv14737,essv3417,essv23333,essv23817,essv457,essv18980,essv17985,essv5189,essv5314,essv3755,essv1108,essv2253,essv2689,essv9912,essv377,essv10784 M 271 0 0 "" NA07000,NA07034,NA07048,NA10831,NA10838,NA11882,NA12003,NA12005,NA12234,NA12249,NA12264,NA12707,NA12750,NA12762,NA12763,NA12814,NA12872,NA12874,NA18504,NA18523,NA18529,NA18532,NA18537,NA18563,NA18566,NA18573,NA18577,NA18603,NA18609,NA18611,NA18612,NA18620,NA18859,NA18862,NA18912,NA18944,NA18945,NA18951,NA18952,NA18960,NA18961,NA18964,NA18966,NA18967,NA18971,NA18974,NA18976,NA18981,NA18990,NA19127,NA19129,NA19130,NA19137,NA19138,NA19141,NA19145,NA19153,NA19154,NA19159,NA19161,NA19171,NA19172,NA19194,NA19202,NA19204,NA19206,NA19210,NA19211,NA19238 nsv521527 1 221770507 221772879 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698144 S 2026 0 1 "" nsv832714 1 221899068 222112131 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441686 S 95 0 1 "" esv34905 1 221938139 221983317 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6979748,essv6990403 M 771 1 0 "" NA18621 nsv8880 1 221963143 221994445 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25458,nssv26861 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA18564,NA18942 nsv441740 1 221965952 221990931 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv4709 1 221971729 221974212 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1726 S 9 1 0 "" NA18555 nsv433350 1 221972019 221992760 CNV Gain Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463231 S 9 1 0 Samples from several populations that are part of the HapMap project. "" NA18555 dgv185e1 1 221972429 221998234 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv6069,essv4332,essv5865 M 271 0 0 "" NA18555,NA18564,NA18621 dgv186e1 1 221972429 222010220 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1408,essv7250 M 271 0 0 "" NA18635 nsv4720 1 221979953 222024744 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8149 S 9 0 1 "" NA12156 nsv4731 1 221986880 221988190 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1735 S 9 1 0 "" NA18555 nsv832725 1 222033733 222216856 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441687 S 95 1 0 "" nsv832736 1 222122452 222275354 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441688 S 95 0 1 "" nsv160519 1 222211907 222211907 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv179097 M 24 "" nsv525391 1 222219355 222235273 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701514 S 2026 1 0 "" nsv524126 1 222280512 222517388 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700004 S 2026 1 0 "" nsv159413 1 222313501 222313679 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv177991 M 24 "" nsv520628 1 222333141 222400097 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv674868,nssv673330,nssv685769,nssv694659,nssv697156 M 2026 0 5 "" nsv160017 1 222364117 222367138 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178595 M 24 "" nsv832747 1 222500878 222680150 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441689 S 95 1 0 "" nsv523155 1 222541618 222546565 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698864 S 2026 0 1 "" nsv524575 1 222541618 222549507 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700531 S 2026 0 1 "" nsv832759 1 222610495 222810905 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441690 S 95 0 1 "" nsv517107 1 222682002 222815380 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv679636,nssv674845,nssv660071,nssv670771,nssv692442,nssv656909,nssv705787,nssv661530,nssv670703,nssv689961,nssv653609,nssv655350,nssv668445,nssv700478,nssv676350,nssv669419,nssv665773 M 2026 14 3 "" nsv832770 1 222771865 222962247 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441691 S 95 0 1 "" nsv4744 1 222816033 222849493 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8156 S 9 1 0 "" NA12156 nsv527874 1 222864613 222869514 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704373 S 2026 0 1 "" nsv832781 1 222877636 223057432 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441692 S 95 1 0 "" nsv523247 1 222928513 222933012 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698976 S 2026 0 1 "" nsv522446 1 223092265 223230673 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705805 S 2026 0 1 "" nsv4755 1 223103070 223138343 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3802 S 9 1 0 "" NA12878 nsv516277 1 223132076 223140039 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv667279,nssv673552,nssv663808,nssv677712,nssv670946 M 2026 0 5 "" nsv523759 1 223230240 223230673 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699579 S 2026 0 1 "" nsv160494 1 223292504 223292848 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv179072 M 24 "" nsv4766 1 223332689 223377696 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8162 S 9 0 1 "" NA12156 nsv520923 1 223434353 223485683 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv682689,nssv677713,nssv700080 M 2026 0 3 "" nsv832792 1 223518113 223671727 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441693 S 95 0 1 "" nsv468227 1 223530471 223647525 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543356 S 1557 0 1 "" NINDS_142 nsv522990 1 223596874 223609647 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698660 S 2026 0 1 "" esv33574 1 223656383 223660925 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98914 S 51 0 1 "" 21606 nsv522490 1 223752743 223756879 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705857 S 2026 0 1 "" nsv508063 1 223786913 223792913 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618522 S 4 0 1 "" CHM nsv4777 1 223882075 223914854 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4998 S 9 1 0 "" NA19129 nsv523549 1 223902701 223903015 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699327 S 2026 0 1 "" nsv7190 1 223960051 223991235 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv574,nssv6181 M 9 0 0 "" NA12156,NA19240 esv33212 1 224186015 224186340 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100064 S 51 0 1 "" 22086 esv32853 1 224186851 225112944 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99963 S 51 1 0 "" 22086 nsv515496 1 224219209 224274673 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv656192,nssv685630,nssv678134,nssv688321,nssv657798,nssv672343,nssv691322,nssv706069,nssv674739,nssv653322,nssv656035,nssv691302,nssv669589,nssv657033,nssv682125,nssv658371,nssv655930,nssv692887,nssv675688,nssv661954,nssv664423,nssv663718,nssv687627,nssv660970,nssv670947,nssv683178,nssv655111 M 2026 0 27 "" nsv519324 1 224312793 224330203 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696792 S 2026 1 0 "" dgv26n21 1 224323105 224326577 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv522256,nsv528332 M 2026 2 0 "" nsv468249 1 224323105 224352243 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543377 S 1557 0 1 "" 1780854495_A dgv8n6 1 224330829 224331153 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv160557,nsv159589 M 24 "" nsv516409 1 224341866 224603480 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695015,nssv684814,nssv669590,nssv654535,nssv668165,nssv688018,nssv677714 M 2026 0 7 "" nsv523935 1 224344859 224988484 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699781 S 2026 0 1 "" nsv832803 1 224461853 224620416 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441694 S 95 0 1 "" nsv482143 1 224601115 224603748 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558504 S 1 1 0 "" KB1 nsv520340 1 224730671 224762882 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697358 S 2026 1 0 "" nsv517545 1 224762882 224992734 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv670195,nssv664603,nssv668715,nssv676839,nssv677715,nssv686799,nssv652328,nssv691445,nssv692740,nssv657126,nssv690278,nssv669591,nssv664588,nssv706056,nssv688019 M 2026 0 15 "" nsv508697 1 224846772 224929349 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620154 S 4 0 1 "" NA15510 nsv159804 1 224878896 224879224 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178382 M 24 "" nsv468305 1 224987930 225038412 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543429 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00560 nsv509635 1 225028394 225128720 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623811 S 4 1 0 "" NA18994 nsv511020 1 225028394 225171020 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618636 S 4 0 0 "" CHM nsv160594 1 225061207 225063421 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv179172 M 24 "" dgv9n6 1 225062472 225064674 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv159946,nsv160307 M 24 "" nsv4788 1 225064411 225065318 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1746 S 9 1 0 "" NA18555 dgv10n6 1 225078116 225080367 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv159594,nsv159225 M 24 "" nsv437266 1 225273356 225274680 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467147 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19100 nsv527652 1 225673921 225680359 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704123 S 2026 0 1 "" nsv516336 1 225678848 225680359 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv693593,nssv676369,nssv667674 M 2026 0 3 "" nsv471773 1 225680126 225681116 CNV Loss Hinds et al 2006 16327809 Oligo_aCGH,PCR Custom Perlegen arrays nssv646054 M 1.044 95 "" nsv508698 1 226092803 226145331 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617421,nssv622788 M 4 0 2 "" CHM,NA18994 nsv4799 1 226106418 226137924 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv585,nssv3820,nssv10510 M 9 0 3 "" NA12878,NA18956,NA19240 nsv8891 1 226114786 226129759 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27025,nssv25187,nssv21080,nssv21415,nssv25180,nssv23695,nssv26847 M 31 0 7 Samples from several populations that are part of the HapMap project. "" NA10839,NA18564,NA18572,NA18853,NA18975,NA18980,NA19240 nsv160940 1 226119273 226127575 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv179518 M 24 "" nsv442599 1 226123591 226126931 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv523763 1 226129014 226131786 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699584 S 2026 0 1 "" nsv438148 1 226129014 226134118 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv469951,nssv469940 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA10838,NA12004 nsv832814 1 226446095 226642117 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441695 S 95 1 0 "" nsv528956 1 226554299 226570694 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705652 S 2026 0 1 "" nsv832825 1 226578181 226745275 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441697 S 95 0 1 "" nsv518223 1 226716897 226724029 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695647 S 2026 0 1 "" nsv520656 1 226722028 226722953 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697540 S 2026 0 1 "" nsv516432 1 226722773 226724029 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv661344,nssv683156,nssv694339,nssv655622,nssv672780,nssv668326 M 2026 0 6 "" nsv526554 1 226728766 226730216 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702868 S 2026 0 1 "" nsv468327 1 226742473 226746992 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543450 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01081 nsv519157 1 226742473 226746992 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696635 S 2026 0 1 "" nsv4810 1 226918184 226951708 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3829 S 9 1 0 "" NA12878 nsv508064 1 226920882 226926882 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618523 S 4 0 1 "" CHM nsv527891 1 226962102 226974985 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704394 S 2026 1 0 "" esv32952 1 227019599 227022337 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93924,essv96814,essv94615,essv92802,essv96431,essv99137,essv100182 M 51 7 0 "" 21634,21659,21932,21944,22261,22275,22286 nsv160269 1 227031265 227031265 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178847 M 24 "" dgv27n21 1 227052629 227056381 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv527218,nsv522630 M 2026 0 2 "" nsv524949 1 227128219 227128495 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700967 S 2026 0 1 "" nsv832836 1 227135809 227274744 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441698 S 95 0 1 "" nsv508065 1 227598563 227604563 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621490,nssv618524,nssv622306,nssv624233 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv517116 1 227625413 227630074 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv683876,nssv674401,nssv656768,nssv689495,nssv653381,nssv652647,nssv663273,nssv666987,nssv657975,nssv684344,nssv652884,nssv653811,nssv672611,nssv672883,nssv664842,nssv665817,nssv663936,nssv659411,nssv659733,nssv689029,nssv673075 M 2026 0 21 "" nsv818833 1 227627201 227628678 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416701,nssv1416702 M 112 0 2 "" NA19160,NA19161 dgv18n17 1 227627201 227631218 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437271,nsv437270,nsv437267,nsv437268 M 60 0 4 "" NA18506,NA18860,NA19139,NA19161 nsv441741 1 227842319 227849387 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv187e1 1 227931495 228222731 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv24276,esv602,essv21230 M 271 0 0 "" NA10856,NA11830 nsv516935 1 227958126 228119869 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701885,nssv655054,nssv673980,nssv685923,nssv694737,nssv657699,nssv683120,nssv685222,nssv693621 M 2026 9 0 "" nsv8902 1 228016694 228121646 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24883 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA11830 nsv468338 1 228018224 228119869 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543461 S 1557 1 0 "" 1780846030_A nsv4821 1 228019871 228055233 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv593 S 9 1 0 "" NA19240 dgv188e1 1 228033829 228134776 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv25116,essv19056 M 271 0 0 "" NA10856,NA11830 nsv4832 1 228065730 228096604 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3836 S 9 1 0 "" NA12878 nsv509646 1 228225714 228252517 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619824,nssv623812,nssv617999 M 4 3 0 "" CHM,NA10860,NA18994 nsv4843 1 228235420 228243839 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3837 S 9 1 0 "" NA12878 nsv4855 1 228338214 228340510 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3838 S 9 1 0 "" NA12878 nsv468382 1 228392220 228509755 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543502 S 1557 0 1 "" 1780862530_A nsv528452 1 228465414 228487307 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705051 S 2026 0 1 "" nsv832847 1 228627790 228822670 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441699 S 95 0 1 "" nsv4866 1 228654482 228698805 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1747 S 9 0 1 "" NA18555 nsv526070 1 228686231 228691345 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702310 S 2026 0 1 "" nsv159622 1 228729869 228730196 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178200 M 24 "" nsv158971 1 228765326 228766986 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv177549 M 24 "" nsv521855 1 228814370 228820401 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694629 S 2026 1 0 "" nsv517546 1 228816740 228820401 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv658706,nssv652329 M 2026 2 0 "" esv2750829 1 228901750 229685954 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6985215,essv6988905,essv6985212,essv6985213,essv6985214 M 771 1 0 "" SPC_127 nsv4877 1 228963392 228997287 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4999 S 9 1 0 "" NA19129 nsv159788 1 229055835 229057877 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178366 M 24 "" nsv832858 1 229421038 229588207 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441700 S 95 0 1 "" nsv437272 1 229540882 229548741 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467153 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19205 nsv832870 1 229562741 229722727 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441701 S 95 0 1 "" nsv522164 1 229588945 229616153 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694937 S 2026 1 0 "" nsv528272 1 229608393 229610693 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704840 S 2026 0 1 "" nsv4888 1 229898405 229930510 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3839 S 9 1 0 "" NA12878 nsv521927 1 229975461 229977120 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694697 S 2026 0 1 "" nsv522289 1 229994976 230008031 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695071 S 2026 0 1 "" dgv28n21 1 230021666 230042203 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv523182,nsv525793 M 2026 2 0 "" nsv525217 1 230036181 230052994 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701303 S 2026 0 1 "" nsv528071 1 230062800 230072262 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704607 S 2026 0 1 "" nsv522207 1 230111907 230119807 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694144 S 2026 0 1 "" nsv159841 1 230115151 230115151 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178419 M 24 "" nsv832881 1 230136673 230318953 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441702 S 95 1 0 "" nsv832892 1 230226482 230407329 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441703 S 95 0 1 "" nsv508066 1 230266731 230272731 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618525,nssv624234 M 4 0 2 "" CHM,NA18994 nsv506983 1 230358963 230364963 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620680,nssv623295,nssv619264 M 4 3 0 "" NA10860,NA15510,NA18994 nsv4899 1 230453877 230487839 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8178 S 9 1 0 "" NA12156 esv33741 1 230556915 230557018 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98702,essv100671,essv98167,essv101365,essv97862,essv93666,essv97280,essv99797,essv95032,essv96440,essv100189,essv94294 M 51 0 12 "" 21606,21656,21772,21805,21837,21972,22075,22086,22231,22261,22286,22394 esv33370 1 230563200 230563521 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97539,essv94535 M 51 0 2 "" 21616,21932 nsv832903 1 230571076 230727338 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441708,nssv1441709,nssv1441705,nssv1441706,nssv1441710,nssv1441711,nssv1441713,nssv1441721,nssv1441714,nssv1441712,nssv1441717,nssv1441720,nssv1441719,nssv1441724,nssv1441722,nssv1441723,nssv1441725,nssv1441704,nssv1441726,nssv1441715,nssv1441716 M 95 0 21 "" nsv519237 1 230584180 230586379 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696728 S 2026 0 1 "" nsv159799 1 230625380 230626482 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178377 M 24 "" nsv509657 1 230643674 230654992 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618000,nssv619826,nssv623814,nssv621110 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv522312 1 230696160 230701906 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695092 S 2026 0 1 "" nsv159229 1 230812923 230816593 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv177807 M 24 "" nsv4910 1 230879617 230896471 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8185 S 9 0 1 "" NA12156 dgv29n21 1 230910608 230919785 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv524608,nsv519695 M 2026 0 2 "" nsv832914 1 230962718 231164249 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441727 S 95 0 1 "" nsv441742 1 231010331 231014770 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv524784 1 231010781 231014111 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700776 S 2026 0 1 "" nsv468395 1 231017004 231050985 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543514 S 1557 0 1 "" 1780862416_A nsv4921 1 231030861 231064481 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2782 S 9 1 0 "" NA18555 nsv832925 1 231116037 231298464 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441731,nssv1441730,nssv1441728 M 95 0 3 "" nsv506984 1 231130383 231136383 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623296 S 4 1 0 "" NA18994 dgv189e1 1 231180061 231292050 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv24409,essv7309 M 271 0 0 "" NA12707,NA18570 dgv190e1 1 231180061 231434698 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv14394,essv9689,essv6697,essv15277,essv12262,essv16420,essv4293,essv4953,esv456,essv8106,essv11108,essv7150 M 271 0 0 "" NA18507,NA18547,NA18603,NA18608,NA18637,NA18913,NA19094,NA19101,NA19139,NA19206,NA19211 nsv8913 1 231218806 231265811 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21775,nssv27155,nssv23980,nssv23702,nssv24298 M 31 3 2 Samples from several populations that are part of the HapMap project. "" NA07048,NA18564,NA18980,NA19007,NA19132 nsv525688 1 231332310 231334406 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701846 S 2026 0 1 "" nsv528765 1 231360444 231368916 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705428 S 2026 0 1 "" nsv4932 1 231368385 231389271 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5009 S 9 1 0 "" NA19129 nsv4943 1 231414166 231441686 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8195 S 9 1 0 "" NA12156 nsv508699 1 231468623 231509286 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622789,nssv619000,nssv620155 M 4 0 3 "" NA10860,NA15510,NA18994 dgv30n21 1 231687358 232094419 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv523941,nsv528775 M 2026 2 0 "" nsv471774 1 231862785 231864579 CNV Loss Hinds et al 2006 16327809 Oligo_aCGH,PCR Custom Perlegen arrays nssv646055 M 0.448 95 "" nsv468406 1 231884747 231952447 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543525 S 1557 1 0 "" 1780854491_A nsv509668 1 231895455 231920266 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621111,nssv619827 M 4 2 0 "" NA10860,NA15510 nsv4954 1 231898201 231922280 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3840 S 9 1 0 "" NA12878 nsv524135 1 232006503 232011711 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700013 S 2026 0 1 "" nsv832936 1 232133639 232299288 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441732,nssv1441733 M 95 2 0 "" nsv832947 1 232260340 232444583 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441734 S 95 1 0 "" nsv508701 1 232281586 232314909 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622790 S 4 0 1 "" NA18994 nsv159765 1 232373481 232373947 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178343 M 24 "" dgv31n21 1 232377248 232380213 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv524989,nsv517883 M 2026 0 2 "" nsv160124 1 232380617 232380954 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178702 M 24 "" nsv832958 1 232409962 232614697 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441735 S 95 0 1 "" nsv509679 1 232541169 232607525 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623815,nssv621112,nssv619828 M 4 3 0 "" NA10860,NA15510,NA18994 nsv4966 1 232580921 232604408 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5027,nssv1765,nssv6186,nssv3841,nssv9418 M 9 5 0 "" NA12156,NA12878,NA18517,NA18555,NA19129 nsv468417 1 232581075 232591706 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543536 S 1557 0 1 "" 1782681278_A nsv832969 1 232600353 232800784 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441736 S 95 1 0 "" nsv516792 1 232608698 232617073 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv670903,nssv693540,nssv655322,nssv661118 M 2026 0 4 "" nsv468428 1 232610341 232683432 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543547 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00264 nsv468439 1 232617934 232636065 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543558 S 1557 0 1 "" 1780862101_A nsv522991 1 232705190 232739487 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698661 S 2026 0 1 "" nsv468450 1 232739487 232872427 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543569 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00307 nsv508702 1 232828658 232877527 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620156,nssv622791 M 4 0 2 "" NA15510,NA18994 nsv4977 1 232838225 232880291 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1766 S 9 0 1 "" NA18555 nsv159414 1 232920981 232921305 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv177992 M 24 "" nsv516855 1 232925149 233113830 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv654460,nssv658486,nssv683069,nssv684990,nssv659604 M 2026 5 0 "" dgv60n27 1 232930252 233107980 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv468472,nsv468461 M 1557 2 0 "" HGDP00021,HGDP01202 nsv4988 1 233188505 233249724 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6197,nssv3843,nssv5036,nssv10547,nssv2788 M 9 5 0 "" NA12156,NA12878,NA18555,NA18956,NA19129 dgv191e1 1 233192877 233228405 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv20816,esv977 M 271 0 0 "" NA10855 nsv510599 1 233197949 233211048 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618637 S 4 0 0 "" CHM nsv8924 1 233201760 233205549 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24889,nssv27513,nssv25717,nssv22748,nssv25467,nssv22415,nssv23989,nssv22744,nssv25697,nssv27145,nssv27296,nssv24588,nssv22747,nssv27285,nssv27942 M 31 1 14 Samples from several populations that are part of the HapMap project. "" NA07029,NA10847,NA10863,NA12155,NA12740,NA12802,NA18502,NA18504,NA18517,NA18564,NA18942,NA19132,NA19173,NA19221,NA19240 nsv509690 1 233202206 233211048 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623816,nssv619829 M 4 2 0 "" NA10860,NA18994 essv18459 1 233207744 233216822 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA11832 nsv509702 1 233220260 233220260 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621113 S 4 1 0 "" NA15510 nsv4999 1 233226640 233271564 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1778 S 9 0 1 "" NA18555 nsv522602 1 233264408 233265436 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705993 S 2026 0 1 "" nsv5010 1 233285692 233300068 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3844 S 9 1 0 "" NA12878 nsv5021 1 233332820 233358113 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8212 S 9 0 1 "" NA12156 nsv8935 1 233445733 233460474 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25169 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18504 dgv61n27 1 233449812 233458761 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv468483,nsv468494 M 1557 2 0 "" HGDP00940,HGDP01200 nsv528602 1 233449812 233458761 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705228 S 2026 1 0 "" nsv818844 1 233449812 233458761 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417825 S 112 1 0 "" NA18852 nsv441743 1 233450216 233457552 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv516612 1 233455376 233457381 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv669541,nssv689999 M 2026 0 2 "" esv34411 1 233457556 233459000 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6979990,essv6979989 M 771 1 0 "" NA18912 dgv192e1 1 233458152 233471959 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv961,essv8555 M 271 0 0 "" NA18503 nsv468506 1 233603558 233605181 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543625 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00527 nsv832982 1 233609681 233770663 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441737 S 95 1 0 "" nsv520100 1 233636180 233648010 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697223 S 2026 0 1 "" nsv521224 1 233647955 233648010 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv687200,nssv686062 M 2026 0 2 "" nsv516399 1 233668688 233669168 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv673662,nssv659519,nssv690384,nssv684386,nssv656534,nssv668041,nssv661736,nssv672884,nssv700968 M 2026 0 9 "" nsv5032 1 233708925 233712697 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2792 S 9 1 0 "" NA18555 nsv160668 1 233771274 233771274 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv179246 M 24 "" nsv523073 1 233908799 233912425 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698762 S 2026 0 1 "" nsv524393 1 233928681 233929894 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700311 S 2026 0 1 "" nsv159991 1 234068029 234068092 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178569 M 24 "" nsv160537 1 234068097 234068160 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv179115 M 24 "" dgv193e1 1 234267835 235094143 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv7733,essv7479,esv533 M 271 0 0 "" NA18633 nsv8946 1 234289605 234292218 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28025,nssv25177,nssv27275 M 31 3 0 Samples from several populations that are part of the HapMap project. "" NA12155,NA18860,NA19221 esv34468 1 234338811 235052000 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6986950,essv6986949,essv6979802,essv6979803,essv6979804 M 771 1 0 "" NA18633 nsv832993 1 234412074 234587903 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441738 S 95 0 1 "" nsv8957 1 234429641 234435826 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22743,nssv21410 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA10847,NA18853 nsv471615 1 234509737 234660353 CNV Gain+Loss Sharp et al 2005 15918152 BAC_aCGH,FISH Eichler Segmental Duplication BAC array nssv549245,nssv549246,nssv549251,nssv549249,nssv549248,nssv549250,nssv549247 M 48 4 3 "" NA10470,NA10471,NA10496,NA15724,NA15727,NA15731,NA17059 nsv468517 1 234560138 234614174 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543636 S 1557 0 1 "" 1780854299_A nsv5043 1 234648143 234679649 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10562 S 9 1 0 "" NA18956 nsv160395 1 234677711 234677800 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178973 M 24 "" nsv517981 1 234693649 234694410 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695393 S 2026 0 1 "" esv2422256 1 234768002 234973903 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161321 S 181 1 0 "" ND03770 nsv833004 1 234805811 234990844 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441739 S 95 0 1 "" nsv8968 1 234808960 234812900 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20758 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19144 nsv515516 1 234811582 234813960 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv653422,nssv658007,nssv668376 M 2026 0 3 "" nsv521612 1 234859541 235056305 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694466 S 2026 0 1 "" nsv468528 1 234941907 234979009 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543647 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00855 nsv833015 1 234947474 235121011 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441742 S 95 0 1 "" nsv468550 1 234979009 235099847 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543668 S 1557 1 0 "" NINDS_212 nsv159463 1 235029409 235031013 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178041 M 24 "" nsv525909 1 235031970 235032762 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702113 S 2026 0 1 "" nsv471775 1 235076533 235078653 CNV Loss Hinds et al 2006 16327809 Oligo_aCGH,PCR Custom Perlegen arrays nssv646056 M 0.147 95 "" nsv833026 1 235132161 235254938 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441743 S 95 0 1 "" nsv442620 1 235178308 235182135 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv518798 1 235179478 235181468 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694067 S 2026 0 1 "" nsv506985 1 235325932 235331932 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617552 S 4 1 0 "" CHM nsv5054 1 235332527 235376780 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1784 S 9 0 1 "" NA18555 nsv468583 1 235387001 235416981 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543696 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00326 nsv818855 1 235401298 235405514 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417175 S 112 0 1 "" NA18550 nsv468594 1 235412224 235446408 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543701 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01238 nsv468605 1 235436084 235482411 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543708 S 1557 0 1 "" 1780862432_A nsv159281 1 235792491 235797150 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv177859 M 24 "" nsv518880 1 235801781 235801966 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696339 S 2026 0 1 "" nsv833037 1 235848209 236025453 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441744 S 95 0 1 "" dgv194e1 1 236092135 236715545 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv5787,esv823 M 271 0 0 "" NA18566 nsv526244 1 236097495 236100711 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702516 S 2026 0 1 "" nsv506986 1 236195087 236201087 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619265 S 4 1 0 "" NA10860 esv35011 1 236233461 236625000 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6990377,essv6979532,essv6979531,essv6979530,essv6986880 M 771 1 0 "" NA18566 essv4530 1 236233461 236634188 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18566 nsv519393 1 236288043 236516629 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696830 S 2026 1 0 "" nsv5065 1 236333860 236336139 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1797 S 9 1 0 "" NA18555 nsv508067 1 236336321 236342321 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621491,nssv624236,nssv622307,nssv618526 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv519885 1 236497249 236500332 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697104 S 2026 1 0 "" nsv8979 1 236547732 236551089 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27395 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA12155 dgv32n21 1 236550795 236551501 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv520537,nsv523248 M 2026 0 2 "" nsv159120 1 236641660 236643448 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv177698 M 24 "" nsv509713 1 236673171 236689250 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621114,nssv623817 M 4 2 0 "" NA15510,NA18994 nsv520710 1 236680110 236683678 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv687996,nssv674381 M 2026 2 0 "" nsv821622 1 236688900 236720921 CNV Loss Sebat_et_al_2004 15273396 ROMA Custom Nimblegen photoprint 85000 probe ROMA oligo array nssv1421224 S 31 0 1 "" nsv8992 1 236718751 236721188 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28303,nssv27416,nssv27507,nssv25726,nssv25457,nssv24003,nssv23381,nssv24903,nssv26182,nssv21770,nssv27011,nssv28110,nssv23065,nssv27623,nssv25962,nssv23072,nssv23061,nssv23996,nssv22105,nssv25449,nssv21088 M 31 0 21 Samples from several populations that are part of the HapMap project. "" NA10839,NA10847,NA12155,NA12740,NA18504,NA18517,NA18537,NA18552,NA18563,NA18572,NA18853,NA18860,NA18942,NA18972,NA18980,NA19007,NA19132,NA19144,NA19173,NA19221,NA19240 nsv833048 1 236782737 236947150 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441745 S 95 1 0 "" nsv159151 1 236854488 236854571 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv177729 M 24 "" nsv527343 1 236947773 236949490 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703769 S 2026 0 1 "" nsv506987 1 236966291 236972291 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619266 S 4 1 0 "" NA10860 nsv523917 1 237037961 237070825 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699760 S 2026 0 1 "" nsv468650 1 237172165 237293468 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543741 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00950 nsv516512 1 237260878 237261174 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv668770,nssv660466 M 2026 0 2 "" nsv468661 1 237353099 237496191 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543752 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00950 nsv524932 1 237478131 237489965 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700945 S 2026 0 1 "" nsv517999 1 237612566 237766459 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695410 S 2026 0 1 "" nsv833059 1 237672830 237851176 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441747,nssv1441746 M 95 2 0 "" nsv160688 1 237816380 237816469 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv179266 M 24 "" nsv523209 1 237828950 237833288 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698929 S 2026 0 1 "" nsv524187 1 237912728 237912875 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700070 S 2026 0 1 "" nsv527805 1 237977059 237982726 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704299 S 2026 0 1 "" nsv525983 1 238032574 238037742 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702202 S 2026 0 1 "" nsv159993 1 238113586 238113649 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178571 M 24 "" nsv528015 1 238191260 238396772 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704543 S 2026 1 0 "" dgv16e55 1 238351139 238659000 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv2750831,esv2750830 M 771 2 0 "" BEC_614,BEC_74 nsv523554 1 238355142 238422592 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699332 S 2026 0 1 "" nsv520996 1 238406596 238415836 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv686800,nssv679608,nssv682669 M 2026 0 3 "" nsv508068 1 238450846 238456846 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622308,nssv621492,nssv618527 M 4 0 3 "" CHM,NA10860,NA15510 nsv508703 1 238472981 238578142 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619001 S 4 0 1 "" NA10860 nsv468672 1 238527288 238881990 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543763 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00950 nsv528016 1 238549440 238777391 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704544 S 2026 1 0 "" nsv515604 1 238641395 238655855 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv664058,nssv701176,nssv687922,nssv663296,nssv680077 M 2026 0 5 "" nsv5077 1 238767771 238812877 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8221 S 9 0 1 "" NA12156 nsv160878 1 238934036 238934036 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv179456 M 24 "" nsv5088 1 238946110 238991292 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8227 S 9 0 1 "" NA12156 nsv159213 1 239010961 239010961 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv177791 M 24 "" nsv468683 1 239065124 239467140 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543774 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01215 nsv525999 1 239089006 239094821 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702225 S 2026 1 0 "" nsv519452 1 239093719 239100405 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696861 S 2026 0 1 "" nsv468694 1 239124299 239150425 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543785 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00958 nsv519429 1 239134040 239664257 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696849 S 2026 1 0 "" nsv526980 1 239162210 239168341 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703352 S 2026 0 1 "" nsv5099 1 239174044 239219166 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8232 S 9 0 1 "" NA12156 nsv522809 1 239297037 239303374 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698455 S 2026 0 1 "" dgv195e1 1 239362708 239492029 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2382,essv2147,essv24115,essv5765,essv20518,essv7951,essv6510 M 271 0 0 "" NA07048,NA12716,NA18540,NA18572,NA18976,NA18978,NA19203 dgv196e1 1 239362708 239606926 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv12929,esv944,essv19812,essv21505 M 271 0 0 "" NA12003,NA12864,NA19094 nsv9003 1 239366598 239514463 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28353,nssv28160,nssv27405,nssv23066,nssv26187,nssv25971,nssv27141,nssv25163,nssv25183,nssv23691,nssv23371,nssv25460,nssv22435,nssv23375,nssv24283,nssv23382,nssv27731,nssv23062 M 31 0 18 Samples from several populations that are part of the HapMap project. "" NA10839,NA10847,NA10863,NA11830,NA12740,NA12802,NA18502,NA18517,NA18537,NA18552,NA18564,NA18942,NA18972,NA18975,NA18980,NA19132,NA19221,NA19240 esv32774 1 239367984 239794123 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101563,essv100692,essv95070,essv98148,essv94832,essv94365,essv96963,essv97797,essv95460,essv95786,essv92940,essv96006,essv93388,essv94225 M 51 14 0 "" 21603,21656,21721,21772,21791,21808,21817,21837,21847,21911,21939,22127,22170,22394 nsv5110 1 239375923 239408531 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6205 S 9 1 0 "" NA12156 dgv19n17 1 239378562 239396772 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437369,nsv437380,nsv437357 M 60 0 3 "" NA07019,NA10859,NA12753 nsv438159 1 239384941 239390469 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470052,nssv469986,nssv470063,nssv470041,nssv469964,nssv470008,nssv469997,nssv470019,nssv469975,nssv470030 M 269 0 10 Samples from several populations that are part of the HapMap project. "" NA07019,NA07022,NA10856,NA10859,NA10860,NA11830,NA11881,NA11993,NA12753,NA12762 nsv437391 1 239387560 239391971 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467272 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA10856 dgv197e1 1 239405036 239464395 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv12051,essv1580,essv5851,essv23301,essv12877,essv6783,essv14816,essv6436,essv18543,essv5645,essv1327,essv23108 M 271 0 0 "" NA11993,NA12043,NA12264,NA18502,NA18555,NA18579,NA18592,NA18594,NA18870,NA18973,NA18997,NA19238 dgv198e1 1 239405036 239477544 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv10710,essv1705,essv3646,essv12129,essv13975,essv25111,essv20755,essv19325,essv19043 M 271 0 0 "" NA07034,NA07357,NA12814,NA12872,NA18508,NA18968,NA18991,NA19098,NA19173 dgv199e1 1 239405036 239492029 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv633,essv25147,essv7625,essv14033,essv1986,essv4328 M 271 0 0 "" NA11839,NA18547,NA18564,NA18862,NA18942,NA18998 dgv200e1 1 239413619 239454253 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv9558,essv7447 M 271 0 0 "" NA18582,NA18861 nsv518969 1 239415577 239418476 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696437 S 2026 0 1 "" nsv433351 1 239488305 239584460 CNV Gain Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463232 S 9 1 0 Samples from several populations that are part of the HapMap project. "" NA19240 nsv506988 1 239522144 239528144 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623297 S 4 1 0 "" NA18994 nsv517939 1 239702798 239848947 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695351 S 2026 1 0 "" nsv506989 1 239806574 239812574 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623298,nssv620682,nssv617553 M 4 3 0 "" CHM,NA15510,NA18994 nsv159918 1 239828324 239828377 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178496 M 24 "" nsv833070 1 239829152 240026844 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441748 S 95 1 0 "" nsv833081 1 240020477 240147092 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441749 S 95 1 0 "" nsv5121 1 240073470 240118087 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8247 S 9 0 1 "" NA12156 nsv833093 1 240102327 240304871 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441750 S 95 0 1 "" nsv522102 1 240147405 240343406 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694874 S 2026 1 0 "" nsv833104 1 240268789 240418339 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441753,nssv1441751 M 95 1 1 "" nsv509724 1 240288733 240341941 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621115,nssv619831 M 4 2 0 "" NA10860,NA15510 nsv5132 1 240309879 240343405 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10580,nssv3845 M 9 2 0 "" NA12878,NA18956 nsv5143 1 240472713 240486440 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4610 S 9 0 1 "" NA19129 nsv160658 1 240488065 240488065 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv179236 M 24 "" nsv519230 1 240640901 240648428 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696721 S 2026 0 1 "" nsv833115 1 240735625 240901100 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441754 S 95 1 0 "" nsv522504 1 240802796 240817882 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705872 S 2026 0 1 "" nsv516557 1 240870859 241027541 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv669142,nssv688542,nssv705662 M 2026 3 0 "" nsv818866 1 240964569 240987518 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417827 S 112 1 0 "" NA18852 nsv528017 1 241107773 241164863 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704545 S 2026 1 0 "" nsv5154 1 241119776 241150557 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10581 S 9 1 0 "" NA18956 nsv5165 1 241181130 241213096 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6213 S 9 1 0 "" NA12156 nsv5176 1 241287717 241319611 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5059 S 9 1 0 "" NA19129 nsv5188 1 241451891 241483628 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5065 S 9 1 0 "" NA19129 nsv515634 1 241642260 241654126 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv669679,nssv664179,nssv686032,nssv705443 M 2026 0 4 "" nsv524642 1 241642260 241662813 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700608 S 2026 0 1 "" nsv528375 1 241677099 241679011 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704962 S 2026 0 1 "" nsv5199 1 241700591 241734798 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2799 S 9 1 0 "" NA18555 nsv441744 1 241765250 241768577 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv527082 1 241787800 241788289 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703461 S 2026 0 1 "" nsv5210 1 241849167 241881240 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1805 S 9 1 0 "" NA18555 nsv7191 1 241902288 242262547 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6222 S 9 0 0 "" NA12156 nsv161160 1 241931988 241932130 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv179738 M 24 "" dgv62n27 1 241960308 241973767 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv468739,nsv468705,nsv468716,nsv468750,nsv468728 M 1557 0 5 "" 1780854436_A,HGDP00029,HGDP00094,HGDP00558,HGDP00683 nsv517322 1 241963080 241973767 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv657769,nssv691284,nssv691042,nssv669269,nssv683099,nssv689138,nssv683394,nssv661820,nssv664574,nssv660984,nssv686971,nssv668784,nssv676441,nssv671356,nssv676675,nssv692741,nssv652813,nssv683553,nssv690751,nssv690947,nssv691139,nssv688589,nssv659171,nssv670926,nssv669680,nssv684815,nssv659653,nssv654897,nssv658836,nssv672787,nssv687556,nssv669331,nssv658848,nssv678388,nssv687836,nssv671438,nssv689110,nssv688436,nssv670359,nssv677830,nssv651714,nssv670704,nssv693509,nssv691664,nssv684778,nssv664273,nssv693423,nssv674994,nssv655323,nssv652317,nssv678614 M 2026 0 51 "" nsv818877 1 241963080 241973767 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415812,nssv1415813 M 112 0 2 "" NA10860,NA11993 nsv468761 1 241963080 241980033 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543852 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00195 nsv441745 1 241963083 241972945 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv508704 1 241967196 242013388 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619002 S 4 0 1 "" NA10860 nsv468783 1 241968726 241973767 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543867 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00066 nsv517138 1 241983706 241989560 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv660923,nssv662006,nssv682476,nssv674467,nssv658925,nssv689324,nssv676070,nssv653847,nssv662183,nssv690785,nssv656271,nssv688901,nssv672207,nssv664966,nssv673016,nssv678839 M 2026 0 16 "" esv33776 1 241995749 242021124 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100187 S 51 0 1 "" 22286 nsv522286 1 242022295 242029325 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695068 S 2026 1 0 "" nsv5221 1 242073251 242091783 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3846 S 9 1 0 "" NA12878 nsv509735 1 242132671 242156947 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618001 S 4 1 0 "" CHM nsv521141 1 242148940 242189263 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697811 S 2026 0 1 "" nsv5232 1 242153025 242158684 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2808 S 9 1 0 "" NA18555 nsv517510 1 242173075 242189263 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv675427,nssv652233,nssv684518,nssv657633,nssv654490,nssv664544,nssv687628,nssv672652 M 2026 0 8 "" nsv508069 1 242255378 242261378 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621493 S 4 0 1 "" NA15510 nsv160896 1 242264018 242264085 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv179474 M 24 "" nsv468805 1 242276683 242555286 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543886 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00537 nsv526429 1 242296591 242305398 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702731 S 2026 0 1 "" nsv468816 1 242305398 242331839 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543893 S 1557 0 1 "" 1780862393_A dgv201e1 1 242354620 242442043 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv5703,esv1375,essv7644 M 271 0 0 "" NA18550,NA18632 nsv441746 1 242355103 242363333 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv160904 1 242361765 242361849 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv179482 M 24 "" nsv506990 1 242438581 242444581 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623299 S 4 1 0 "" NA18994 nsv5243 1 242455437 242470619 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8269 S 9 0 1 "" NA12156 nsv526469 1 242494058 242816479 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702773 S 2026 1 0 "" esv33357 1 242601363 242602114 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98717 S 51 0 1 "" 21606 nsv159602 1 242612963 242614430 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178180 M 24 "" nsv515510 1 242645523 242712175 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv683795,nssv685363,nssv657929,nssv653382,nssv679462,nssv685549,nssv686479,nssv660764,nssv665033,nssv677318,nssv660679,nssv676404 M 2026 0 12 "" nsv9014 1 242721008 242726439 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25708,nssv25463 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18504,NA19132 dgv202e1 1 242733187 243066985 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv457,essv16924,essv17173,essv12652 M 271 0 0 "" NA18500,NA19144,NA19171 nsv9025 1 242740119 242750356 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27271 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA10839 nsv524498 1 242902702 242944921 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700438 S 2026 0 1 "" nsv522303 1 242994585 243019033 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695084 S 2026 0 1 "" nsv525447 1 242994585 243024694 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701575 S 2026 1 0 "" nsv9036 1 243008430 243012369 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23685,nssv27528,nssv27391,nssv22100,nssv24290,nssv22749,nssv25942,nssv25953,nssv25443,nssv23692,nssv25716,nssv25722,nssv27831,nssv26388,nssv23372 M 31 0 15 Samples from several populations that are part of the HapMap project. "" NA07029,NA10839,NA10863,NA11830,NA12740,NA12872,NA18504,NA18517,NA18552,NA18563,NA18572,NA18853,NA18860,NA19132,NA19173 dgv33n21 1 243022637 243073627 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv527464,nsv522963 M 2026 2 0 "" nsv528615 1 243034508 243169356 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705243 S 2026 1 0 "" nsv5254 1 243039401 243073963 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv618 S 9 1 0 "" NA19240 nsv9047 1 243065256 243068579 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26178 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18504 nsv509746 1 243099766 243133817 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619832 S 4 1 0 "" NA10860 nsv509757 1 243152306 243193268 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619833,nssv623819,nssv621116 M 4 3 0 "" NA10860,NA15510,NA18994 nsv159075 1 243203831 243204063 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv177653 M 24 "" nsv523531 1 243219989 243293940 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699306 S 2026 1 0 "" nsv160725 1 243254466 243254597 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv179303 M 24 "" nsv509768 1 243263754 243328749 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621117,nssv618002,nssv619834,nssv623820 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 dgv203e1 1 243265897 243272062 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv3634,esv898 M 271 0 0 "" NA18966 nsv525154 1 243280207 243289060 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701226 S 2026 0 1 "" nsv5265 1 243289833 243325697 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5084,nssv6231,nssv3847,nssv1816,nssv628 M 9 5 0 "" NA12156,NA12878,NA18555,NA19129,NA19240 nsv159925 1 243295939 243296030 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178503 M 24 "" nsv5276 1 243354405 243399139 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8288 S 9 0 1 "" NA12156 esv33129 1 243400471 244654876 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100634,essv94401,essv97853,essv95741,essv95800,essv96741,essv97135,essv100528 M 51 3 5 "" 21656,21808,21837,21841,21911,22011,22075,22298 nsv524007 1 243424628 243488699 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699867 S 2026 1 0 "" nsv509779 1 243588521 243626658 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619835,nssv621118 M 4 2 0 "" NA10860,NA15510 nsv833126 1 243599125 243802191 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441755 S 95 0 1 "" nsv5287 1 243601536 243621162 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8296 S 9 1 0 "" NA12156 nsv7192 1 243617172 243696370 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9427 S 9 0 0 "" NA18517 nsv5299 1 243739951 243766973 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8303 S 9 1 0 "" NA12156 nsv506991 1 243757811 243763811 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620683,nssv619267 M 4 2 0 "" NA10860,NA15510 nsv833137 1 243763358 243933469 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441756 S 95 1 0 "" nsv509790 1 243800343 243935219 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619836 S 4 1 0 "" NA10860 nsv506992 1 243866686 243872686 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617554,nssv623300 M 4 2 0 "" CHM,NA18994 dgv204e1 1 244040626 244648357 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv11368,esv752,essv13602 M 271 0 0 "" NA19127 nsv818889 1 244042039 244055003 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416823 S 112 0 1 "" NA19239 nsv524193 1 244045418 244049711 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700076 S 2026 0 1 "" esv34503 1 244079248 244702111 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6986635,essv6978498,essv6978497,essv6978496,essv6990244 M 771 1 0 "" NA19127 nsv515858 1 244109931 245194816 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701896,nssv690861,nssv680499,nssv667555,nssv675717,nssv695919,nssv699878,nssv687997,nssv663332,nssv699854,nssv663229,nssv688039,nssv663459,nssv666845,nssv685956,nssv657573,nssv678232,nssv705468,nssv692239,nssv665551,nssv665034,nssv680387,nssv675536,nssv683771,nssv698574,nssv669542,nssv705170,nssv662693,nssv685153 M 2026 21 8 "" nsv9058 1 244126748 244129633 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25961 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18860 nsv5310 1 244146527 244203386 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv638,nssv3848,nssv5094,nssv1823 M 9 0 4 "" NA12878,NA18555,NA19129,NA19240 nsv508705 1 244176336 244194980 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620157,nssv619003,nssv617429,nssv622792 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv160148 1 244176497 244182549 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178726 M 24 "" nsv9069 1 244259044 244260979 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26196 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19240 dgv205e1 1 244273235 244603187 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv5500,essv14597,essv17603,essv23536,essv6765 M 271 0 0 "" NA06993,NA12753,NA18562,NA18632,NA19093 nsv5321 1 244369037 244404992 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5104,nssv8310 M 9 0 2 "" NA12156,NA19129 nsv508706 1 244376334 244391007 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620158,nssv622793,nssv617439,nssv619004 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 esv2750832 1 244387000 245377441 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6982109,essv6982110,essv6982111,essv6986087 M 771 1 0 "" BEC_521 nsv9080 1 244453912 244456111 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27638 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19173 nsv508070 1 244454074 244460074 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618528,nssv622309,nssv621494,nssv624237 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv9091 1 244469164 244473710 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25967,nssv27746 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA19132,NA19173 dgv17e55 1 244568569 245143423 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv2750833,esv2750834 M 771 0 2 "" BEC_592,BEC_693 nsv468861 1 244587370 244741703 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543923 S 1557 1 0 "" 1780854079_A nsv9103 1 244645444 244817543 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26192 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19132 dgv20n17 1 244813679 245173410 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437273,nsv437274 M 60 0 2 "" NA19103,NA19221 essv15752 1 244826150 245001136 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19131 dgv206e1 1 244826150 245191415 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv862,essv17008,essv5503,esv668 M 271 0 0 "" NA18632,NA19000,NA19144 nsv5332 1 244830411 244938966 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv658 S 9 0 1 "" NA19240 nsv9114 1 244838949 244840793 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27926 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18517 esv2750835 1 244848721 245367990 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6986320,essv6983006,essv6988613 M 771 1 0 "" BEC_533 nsv9125 1 244849536 244852072 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26167,nssv23986,nssv24580,nssv24274,nssv26384 M 31 5 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA12740,NA18504,NA18572 nsv511035 1 244858311 244906312 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624367,nssv618638 M 4 0 0 "" CHM,NA18994 nsv9136 1 244872245 244874773 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24297,nssv26561,nssv21418,nssv26373,nssv28009,nssv24564,nssv24280,nssv22430,nssv26398,nssv25719,nssv23067,nssv23682,nssv26186 M 31 6 7 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10863,NA12740,NA12872,NA18517,NA18563,NA18853,NA18860,NA18975,NA19007,NA19132,NA19144 nsv5343 1 244882035 244906352 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv11211,nssv5113,nssv6241,nssv3849 M 9 4 0 "" NA12156,NA12878,NA15510,NA19129 nsv509801 1 244883483 244883483 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621120 S 4 1 0 "" NA15510 nsv508724 1 244885599 244885599 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619838 S 4 1 0 "" NA10860 nsv7193 1 244900190 245159431 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3853,nssv9748,nssv10620,nssv10616,nssv6250,nssv3850,nssv5122,nssv10617,nssv669,nssv9433,nssv9432,nssv5132 M 9 0 0 "" NA12156,NA12878,NA18507,NA18517,NA18956,NA19129,NA19240 dgv207e1 1 244921722 245143423 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv12021,essv3335 M 271 0 0 "" NA18948,NA19141 nsv9147 1 244932708 244937100 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24570,nssv26546,nssv26402,nssv27503,nssv23992 M 31 0 5 Samples from several populations that are part of the HapMap project. "" NA07029,NA10839,NA12740,NA18537,NA19240 esv32670 1 244936298 244972804 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv96839,essv101067,essv95664,essv93092,essv94879 M 51 2 3 "" 21659,21693,21841,21863,22231 nsv9158 1 244941769 244945616 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24573,nssv26557,nssv28210 M 31 3 0 Samples from several populations that are part of the HapMap project. "" NA18502,NA18504,NA19221 nsv442630 1 244947200 244961762 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv9169 1 244959817 244962567 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24888,nssv26392,nssv26716,nssv28260,nssv28094 M 31 5 0 Samples from several populations that are part of the HapMap project. "" NA18502,NA18504,NA18517,NA18860,NA19221 nsv5354 1 244966712 245014112 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3852,nssv1824 M 9 0 2 "" NA12878,NA18555 nsv821623 1 244970985 245116449 CNV Loss Sebat_et_al_2004 15273396 ROMA Custom Nimblegen photoprint 85000 probe ROMA oligo array nssv1421235,nssv1421246 M 31 0 2 "" nsv508707 1 244999571 245027176 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617450,nssv622794,nssv620159 M 4 0 3 "" CHM,NA15510,NA18994 dgv208e1 1 245013551 245191415 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv10856,essv10455,essv10555,essv14863,essv10361,essv10788,essv5185,essv22951,essv8114,essv10068,essv16090,essv8329,essv13732,essv15776,essv15465,essv10087,essv14576,essv12319,essv16426,essv21343,essv22471,essv22419,essv18649,essv15893,essv7813,essv16689,essv11707,essv14303,essv4048,essv20914,essv22315,essv9449,essv8824,essv17280,essv10214,essv11433,essv8486,essv19980,essv12992,essv4713,essv9142,essv24829,essv17132,essv15025,essv16758,essv19400,essv11889,essv14742,essv16289,essv5906,essv24649,essv9588,essv23399,essv2283,essv6887 M 271 0 0 "" NA06985,NA07000,NA07357,NA10854,NA10861,NA11829,NA11840,NA12234,NA12761,NA12801,NA12813,NA12878,NA18505,NA18508,NA18515,NA18516,NA18522,NA18523,NA18550,NA18558,NA18605,NA18611,NA18622,NA18635,NA18856,NA18857,NA18859,NA18860,NA18871,NA18872,NA18966,NA19099,NA19100,NA19103,NA19119,NA19129,NA19130,NA19131,NA19138,NA19139,NA19141,NA19142,NA19152,NA19154,NA19159,NA19161,NA19171,NA19194,NA19202,NA19206,NA19208,NA19221,NA19222,NA19223,NA19240 nsv160296 1 245020414 245026764 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv178874 M 24 "" nsv469750 1 245027987 245203470 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649771 M 265 0 2 Samples from several populations that are part of the HapMap project. "" nsv5365 1 245041475 245125291 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3854 S 9 0 1 "" NA12878 nsv9180 1 245053467 245055403 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23983,nssv25168,nssv24895,nssv26856,nssv26565,nssv28310 M 31 0 6 Samples from several populations that are part of the HapMap project. "" NA10863,NA18502,NA18504,NA18572,NA18860,NA19221 esv33052 1 245053969 245122723 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv95080,essv98260,essv94794,essv95696,essv95730,essv93088,essv93083,essv101660,essv95772,essv99019,essv93665,essv96686,essv99952,essv96014,essv93225,essv99694,essv95002,essv92550,essv98026,essv99356,essv99368,essv94186 M 51 4 17 "" 21721,21772,21791,21841,21863,21909,21911,21938,21972,22011,22086,22127,22170,22217,22231,22233,22259,22275,22335,22394 nsv9191 1 245063824 245122235 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25707,nssv21778,nssv26724,nssv26575,nssv25448,nssv25175,nssv28409,nssv22108,nssv28360,nssv27020,nssv28144,nssv24277 M 31 1 9 Samples from several populations that are part of the HapMap project. "" NA10863,NA18502,NA18504,NA18517,NA18572,NA18860,NA19144,NA19221,NA19240 nsv5376 1 245064845 245098397 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8331 S 9 1 0 "" NA12156 dgv5n14 1 245065557 245119001 CNV Loss Cooper et al 2008 18776910 SNP_array nsv433195,nsv433511,nsv433196,nsv433193 M 9 0 4 "" NA12878,NA18555,NA19129,NA19240 nsv433194 1 245070811 245141600 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463075 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA18517 nsv471517 1 245072001 245121144 CNV Deletion Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv547886,nssv547885 M 3 "" nsv442637 1 245075235 245123254 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv471355 1 245115520 245116470 CNV Deletion Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548059,nssv548058 M 3 "" nsv9202 1 245125124 245128970 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25952,nssv27150,nssv28449 M 31 3 0 Samples from several populations that are part of the HapMap project. "" NA18502,NA18504,NA19221 nsv9214 1 245133645 245138028 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26864 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18860 nsv9225 1 245142217 245143811 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28194 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18517 nsv5387 1 245163800 245208167 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv679 S 9 0 1 "" NA19240 esv32631 1 245168866 245171826 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97177 S 51 0 1 "" 22075 nsv433522 1 245183720 245201232 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463403 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA19240 nsv9236 1 245191047 245201350 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26734,nssv27028,nssv28244,nssv27280,nssv27846 M 31 0 5 Samples from several populations that are part of the HapMap project. "" NA18504,NA18517,NA18860,NA19173,NA19240 nsv442640 1 245193282 245198705 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" esv32854 1 245193394 245200083 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv94951 S 51 0 1 "" 22231 nsv5398 1 245327346 245360574 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5144 S 9 1 0 "" NA19129 nsv5410 1 245392382 245416197 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv696 S 9 1 0 "" NA19240 dgv209e1 10 50001 214405 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv12270,esv267,essv9391 M 271 0 0 "" NA18853,NA19101 nsv8592 10 83225 124295 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23282 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19221 esv33395 10 123411 133840 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97005,essv95242 M 51 1 1 "" 21817,21872 nsv442168 10 123551 133255 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv5476 10 142328 168978 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8336 S 9 1 0 "" NA12156 nsv8593 10 161290 164823 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18696 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA10863 nsv8594 10 170341 173501 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18933,nssv18726,nssv16511,nssv18290,nssv19478,nssv19037,nssv18637,nssv16729,nssv18999,nssv18346,nssv16930,nssv17642,nssv18989 M 31 12 1 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10863,NA11830,NA12155,NA12740,NA12802,NA12872,NA18552,NA18563,NA18572,NA18853,NA19173 nsv466693 10 245222 556195 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542174 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00811 nsv519746 10 349403 363048 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv658119,nssv680300,nssv686857,nssv680904,nssv672781,nssv683531,nssv677936 M 2026 0 7 "" dgv11n6 10 403945 404234 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv24885,nsv24306 M 24 "" nsv831765 10 456002 621099 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448160,nssv1448157,nssv1448167,nssv1448159,nssv1448158,nssv1448164,nssv1448163,nssv1448166,nssv1448165,nssv1448169,nssv1448162,nssv1448168,nssv1448156 M 95 0 13 "" nsv25193 10 472622 472681 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43771 M 24 "" nsv524243 10 477973 481349 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700133 S 2026 0 1 "" nsv5487 10 541380 544336 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3855 S 9 1 0 "" NA12878 nsv509339 10 542101 560992 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619287 S 4 1 0 "" NA10860 nsv528733 10 567444 828378 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705389 S 2026 1 0 "" nsv25268 10 568662 568733 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43846 M 24 "" nsv466695 10 585504 632943 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542176 S 1557 1 0 "" NINDS_6 nsv527312 10 608685 631961 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703736 S 2026 0 1 "" nsv520943 10 613410 616412 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697700 S 2026 0 1 "" nsv466696 10 622748 670428 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542177 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00811 nsv818740 10 629750 632943 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417697 S 112 1 0 "" NA18999 nsv24219 10 694097 694348 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv42797 M 24 "" dgv34n21 10 777896 792272 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv525722,nsv521935 M 2026 2 0 "" esv33616 10 789859 790003 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98573,essv96370 M 51 0 2 "" 22085,22371 esv32889 10 808451 824608 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99875 S 51 1 0 "" 22086 nsv466698 10 826115 878073 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542178 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00696 nsv5498 10 839137 850462 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8342 S 9 0 1 "" NA12156 nsv510208 10 843917 849917 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621214,nssv618322 M 4 0 2 "" CHM,NA15510 nsv5509 10 923197 928934 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8349 S 9 1 0 "" NA12156 nsv5521 10 976842 1021352 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1835 S 9 0 1 "" NA18555 nsv523365 10 981737 984753 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699114 S 2026 0 1 "" nsv525014 10 1003535 1014214 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701051 S 2026 0 1 "" nsv25261 10 1011935 1012098 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43839 M 24 "" nsv5532 10 1069499 1091700 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8358 S 9 0 1 "" NA12156 nsv521885 10 1106671 1107514 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694107 S 2026 0 1 "" nsv517780 10 1192448 1220968 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv682313,nssv684790,nssv688650,nssv653233,nssv664815,nssv676229,nssv696134 M 2026 0 7 "" nsv527883 10 1208030 1304548 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704385 S 2026 1 0 "" nsv509340 10 1222871 1289901 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619608,nssv620972 M 4 2 0 "" NA10860,NA15510 nsv25073 10 1241273 1241344 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43651 M 24 "" nsv5543 10 1266965 1302291 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3856 S 9 1 0 "" NA12878 nsv519127 10 1341088 1356888 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696605 S 2026 0 1 "" nsv527999 10 1357514 1454892 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704524 S 2026 1 0 "" dgv210e1 10 1432709 1453158 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv25104,esv1102 M 271 0 0 "" NA12814 nsv25304 10 1442210 1442293 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43882 M 24 "" nsv24658 10 1521528 1521589 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43236 M 24 "" nsv24360 10 1572650 1574765 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv42938 M 24 "" nsv24116 10 1609434 1609434 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv42694 M 24 "" nsv5554 10 1623398 1656112 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6259 S 9 1 0 "" NA12156 nsv433508 10 1677171 1683445 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463389 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA18956 nsv25176 10 1731677 1731844 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43754 M 24 "" nsv528115 10 1746440 1764564 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704658 S 2026 1 0 "" dgv18e55 10 1842791 1913396 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv34498,esv34804 M 771 2 0 "" NA18952,NA18974 dgv211e1 10 1842791 1913557 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2558,essv519,esv1134 M 271 0 0 "" NA18952,NA18974 nsv442169 10 1853064 1909687 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv818741 10 1860359 1904417 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417428 S 112 1 0 "" NA18952 essv12096 10 1888756 1898328 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19099 essv14808 10 1888782 1907354 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18870 nsv521102 10 1924068 1974760 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697788 S 2026 1 0 "" nsv521999 10 1962657 1965035 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694768 S 2026 0 1 "" nsv5565 10 1998880 2027332 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10625 S 9 1 0 "" NA18956 nsv831766 10 2020000 2189560 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448170 S 95 1 0 "" nsv5576 10 2143855 2178421 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2819 S 9 1 0 "" NA18555 nsv524643 10 2202037 2209930 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700609 S 2026 0 1 "" nsv831767 10 2265141 2425006 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448171 S 95 1 0 "" nsv831768 10 2310204 2531855 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448174,nssv1448173 M 95 2 0 "" nsv509341 10 2423082 2427121 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620992 S 4 1 0 "" NA15510 nsv5587 10 2520867 2565542 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8373 S 9 0 1 "" NA12156 nsv25410 10 2533494 2533619 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43988 M 24 "" nsv527674 10 2573581 2583077 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704149 S 2026 1 0 "" nsv519975 10 2596931 2610997 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697158 S 2026 0 1 "" nsv516135 10 2613568 2617161 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv689657,nssv673017,nssv666429,nssv655547,nssv656385 M 2026 0 5 "" dgv212e1 10 2650802 3188773 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv603,essv13268,essv14452,esv523 M 271 0 0 "" NA19201 nsv517630 10 2664678 3129701 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697914,nssv702153,nssv687253,nssv652592,nssv670928,nssv681418,nssv685475,nssv687391,nssv679577,nssv662458,nssv705918,nssv656112,nssv661593,nssv682637,nssv667044,nssv671462,nssv667337 M 2026 11 6 "" esv34832 10 2671064 3123648 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6985997,essv6980473,essv6980474,essv6990486,essv6985998 M 771 1 0 "" NA19201 dgv63n27 10 2676476 3123648 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv466703,nsv466701,nsv466704,nsv466702 M 1557 4 0 "" HGDP00460,HGDP00632,HGDP00938,HGDP00940 nsv466706 10 2741062 2828853 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542184 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00773 dgv64n27 10 2773142 2794109 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv466708,nsv466707 M 1557 0 2 "" NINDS_103,NINDS_95 nsv437093 10 2819929 2839913 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv466974 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA07348 nsv25275 10 2981380 2981433 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43853 M 24 "" esv33607 10 2990878 2996081 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98517 S 51 1 0 "" 22352 nsv466709 10 3042436 3085281 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542187 S 1557 0 1 "" NINDS_197 nsv8595 10 3098962 3102529 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18963,nssv18468,nssv19029,nssv16541,nssv21351,nssv19508 M 31 6 0 Samples from several populations that are part of the HapMap project. "" NA07048,NA12155,NA12740,NA12872,NA18564,NA18860 nsv507530 10 3113018 3119018 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620591 S 4 1 0 "" NA15510 esv2750891 10 3131086 3196365 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6983865,essv6983864,essv6983863 M 771 0 1 "" BEC_727 nsv516811 10 3140314 3145790 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv671083,nssv663438,nssv691864,nssv695303 M 2026 0 4 "" nsv8596 10 3153427 3156558 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17786,nssv21833 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18972,NA19007 nsv516917 10 3155316 3157463 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv691215,nssv676842,nssv690234,nssv683158,nssv654985 M 2026 0 5 "" nsv525229 10 3155316 3159771 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701318 S 2026 0 1 "" nsv466711 10 3191072 3395527 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542188 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01030 nsv524854 10 3194561 3220337 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700857 S 2026 1 0 "" dgv35n21 10 3197632 3259317 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv523645,nsv523100,nsv522065 M 2026 3 0 "" esv33742 10 3198223 3292032 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv95804 S 51 1 0 "" 21911 nsv25143 10 3248114 3248188 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43721 M 24 "" nsv24549 10 3248231 3248305 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43127 M 24 "" dgv213e1 10 3297225 3300298 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv24552,esv1303,esv968 M 271 0 0 "" NA11831 nsv523637 10 3297225 3300566 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699437 S 2026 0 1 "" nsv524242 10 3300566 3321092 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700132 S 2026 0 1 "" nsv831769 10 3336707 3494942 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448175 S 95 0 1 "" nsv25168 10 3347111 3347253 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43746 M 24 "" nsv25305 10 3405454 3405535 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43883 M 24 "" nsv5598 10 3418575 3438792 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3857 S 9 1 0 "" NA12878 nsv25192 10 3439262 3439312 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43770 M 24 "" nsv831771 10 3483567 3658824 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448176 S 95 1 0 "" nsv466712 10 3605831 3656716 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542189 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00185 nsv510209 10 3688472 3694472 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618323 S 4 0 1 "" CHM nsv521412 10 3698015 3700626 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694443 S 2026 0 1 "" nsv522710 10 3709164 3714611 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv706122 S 2026 0 1 "" nsv24788 10 3711691 3711751 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43366 M 24 "" nsv517787 10 3781224 3791413 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv693658,nssv673121,nssv683532,nssv686330,nssv690786,nssv667357,nssv657435,nssv670115,nssv683478,nssv667875,nssv680762,nssv682513,nssv664939,nssv686972,nssv653254,nssv689113,nssv667115,nssv679265,nssv661556,nssv688601,nssv656628,nssv680852,nssv677080 M 2026 0 23 "" nsv528577 10 3851214 3851344 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705196 S 2026 0 1 "" nsv24874 10 3859411 3859477 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43452 M 24 "" nsv507531 10 3904172 3910172 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619114,nssv620623,nssv622823 M 4 3 0 "" NA10860,NA15510,NA18994 nsv24718 10 3977604 3981658 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43296 M 24 "" nsv5609 10 3992849 4030114 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8379 S 9 0 1 "" NA12156 nsv831772 10 4029292 4202218 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448177 S 95 1 0 "" dgv214e1 10 4276880 4313493 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1403,esv1066,essv22245 M 271 0 0 "" NA11992 nsv8597 10 4279599 4282525 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20158,nssv18320,nssv21381,nssv20251 M 31 4 0 Samples from several populations that are part of the HapMap project. "" NA18853,NA18860,NA19144,NA19240 esv33732 10 4292983 4308917 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100656 S 51 1 0 "" 21656 nsv437653 10 4294810 4304845 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467534 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18500 nsv507532 10 4313728 4319728 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619141,nssv620648,nssv623101 M 4 3 0 "" NA10860,NA15510,NA18994 nsv518582 10 4318928 4326606 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696027 S 2026 0 1 "" nsv522540 10 4333047 4338396 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705919 S 2026 1 0 "" nsv437654 10 4418563 4449527 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467535 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18863 nsv8598 10 4427110 4432204 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19019 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19173 nsv516066 10 4427657 4437552 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv658317,nssv661737,nssv665965,nssv665985,nssv666545,nssv686631,nssv689030,nssv659465,nssv689658,nssv661487,nssv690149,nssv662309,nssv687438,nssv675922,nssv686595,nssv690064,nssv680462,nssv677666,nssv677354,nssv675156,nssv667242,nssv666939,nssv658634,nssv669369,nssv681113,nssv691010,nssv679186,nssv666430,nssv692701,nssv686698,nssv663462,nssv667116,nssv690787 M 2026 0 33 "" nsv510210 10 4442301 4448301 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621488 S 4 0 1 "" NA15510 nsv525911 10 4512299 4516111 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702115 S 2026 0 1 "" nsv522046 10 4528492 4560425 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694816 S 2026 1 0 "" nsv527315 10 4617405 4626054 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703740 S 2026 0 1 "" nsv525960 10 4747822 4748118 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702171 S 2026 1 0 "" nsv5620 10 4777958 4804661 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8383 S 9 0 1 "" NA12156 nsv519977 10 4924211 4938921 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697159 S 2026 1 0 "" nsv7197 10 4974326 5019031 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3858 S 9 0 0 "" NA12878 nsv5632 10 4984309 4987561 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv715 S 9 1 0 "" NA19240 nsv831773 10 5059805 5099716 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448178,nssv1448179 M 95 0 2 "" nsv466714 10 5132855 5165450 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542190 S 1557 0 1 "" NINDS_235 nsv523631 10 5154836 5160495 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699431 S 2026 0 1 "" nsv5643 10 5219780 5292665 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5156,nssv3859,nssv8387 M 9 0 3 "" NA12156,NA12878,NA19129 nsv508566 10 5246836 5311354 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617375,nssv618939,nssv620172 M 4 0 3 "" CHM,NA10860,NA15510 dgv65n27 10 5275597 5387191 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv466715,nsv466717 M 1557 0 2 "" HGDP00671,HGDP00672 nsv525615 10 5414465 5415422 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701760 S 2026 0 1 "" nsv831774 10 5453556 5697427 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448180 S 95 1 0 "" nsv24420 10 5513004 5513089 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv42998 M 24 "" nsv523491 10 5532109 5760073 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699258 S 2026 1 0 "" esv33743 10 5537117 5542397 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93701 S 51 0 1 "" 21972 dgv215e1 10 5547024 5760430 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv10496,essv13227 M 271 0 0 "" NA19131,NA19143 dgv216e1 10 5547024 5844786 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv831,esv812 M 271 "" dgv217e1 10 5677111 5844786 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv9028,essv14514 M 271 0 0 "" NA19132,NA19202 nsv466718 10 5679913 5697533 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542194 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00893 nsv466719 10 5685901 5702921 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542195 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00912 nsv519582 10 5686109 5760073 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv656962,nssv676923,nssv663512,nssv672886,nssv690930 M 2026 5 0 "" nsv8599 10 5689135 5759934 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21567 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19132 nsv466720 10 5692283 5755407 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542196 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00927 nsv818742 10 5694173 5755407 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418173 S 112 1 0 "" NA19143 nsv442170 10 5705468 5757133 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv19e55 10 5705780 5756864 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv35082,esv34623 M 771 2 0 "" NA19131,NA19143 dgv218e1 10 5705780 5760518 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv14946,essv13294,essv8711 M 271 0 0 "" NA19132,NA19200,NA19202 nsv522415 10 5761659 5808499 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695198 S 2026 1 0 "" nsv8600 10 5773697 5776733 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18615 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18537 nsv528504 10 5779060 5794617 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705111 S 2026 1 0 "" dgv36n21 10 5793743 5808499 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv525080,nsv519891 M 2026 0 2 "" nsv831775 10 5844341 6040855 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448181 S 95 0 1 "" nsv515935 10 5860400 5909845 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv661133,nssv665378,nssv668657 M 2026 3 0 "" nsv5654 10 5908371 5970640 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3860,nssv6272 M 9 0 2 "" NA12156,NA12878 nsv24093 10 5929629 5932883 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv42671 M 24 "" nsv437655 10 5940979 5950367 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467536 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19221 nsv520941 10 5943524 5944924 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697699 S 2026 0 1 "" nsv519773 10 5944306 5945237 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv685026,nssv684268,nssv658449,nssv660681,nssv686097 M 2026 0 5 "" nsv519436 10 6037826 6048619 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695508,nssv673982,nssv697046,nssv705266,nssv692418,nssv656196 M 2026 0 6 "" nsv525927 10 6099904 6118085 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702131 S 2026 0 1 "" nsv5665 10 6195040 6228217 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3862 S 9 1 0 "" NA12878 nsv510211 10 6217949 6223949 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622284 S 4 0 1 "" NA10860 nsv437656 10 6223811 6229368 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467537 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19211 nsv7198 10 6230343 7465172 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv11234 S 9 0 0 "" NA15510 dgv66n27 10 6253813 6268232 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv466725,nsv466726 M 1557 2 0 "" HGDP00760,HGDP01212 nsv521145 10 6281809 6286684 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697813 S 2026 0 1 "" nsv525622 10 6291258 6321221 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701770 S 2026 1 0 "" nsv24567 10 6292543 6292892 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43145 M 24 "" nsv437094 10 6298439 6301710 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv466975 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA10831 nsv524324 10 6334539 6334810 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700229 S 2026 1 0 "" nsv521313 10 6334810 6335554 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694432 S 2026 0 1 "" nsv528919 10 6383321 6392981 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705607 S 2026 1 0 "" nsv5676 10 6421206 6468956 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6278,nssv9925,nssv1862,nssv11235,nssv5171,nssv3863,nssv732 M 9 0 7 "" NA12156,NA12878,NA15510,NA18507,NA18555,NA19129,NA19240 nsv519424 10 6427226 6428934 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv691151,nssv681777,nssv681186,nssv656136,nssv701137 M 2026 0 5 "" nsv50 10 6433069 6462822 CNV Loss Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv50 S 1 0 1 "" NA15510 nsv508567 10 6447688 6467643 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620195,nssv618976,nssv617376 M 4 0 3 "" CHM,NA10860,NA15510 nsv25296 10 6464366 6464366 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43874 M 24 "" nsv5687 10 6577215 6596757 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8413 S 9 0 1 "" NA12156 nsv507533 10 6612947 6618947 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623139,nssv619268,nssv620213 M 4 3 0 "" NA10860,NA15510,NA18994 nsv515823 10 6636248 6637083 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv664888,nssv683122 M 2026 0 2 "" nsv5698 10 6646828 6672449 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5179 S 9 1 0 "" NA19129 nsv516026 10 6679507 6679992 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv669490,nssv681498,nssv663464,nssv673580,nssv668529,nssv665794,nssv660028,nssv690790,nssv670224,nssv686633 M 2026 0 10 "" nsv437095 10 6689070 6706829 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv466976 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA10851 dgv219e1 10 6690997 6705355 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1075,essv21928,essv18912,esv1333,essv18572 M 271 0 0 "" NA10851,NA12057,NA12717 nsv8601 10 6692231 6705474 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18498,nssv19067,nssv18175,nssv16571,nssv17152,nssv20683,nssv23310,nssv18993,nssv18350,nssv18667,nssv16789,nssv20188,nssv18786,nssv19059,nssv17816,nssv21863,nssv16895,nssv19049,nssv21471,nssv17672,nssv18645,nssv18376,nssv19538,nssv20281,nssv21554,nssv18034,nssv17694,nssv20772,nssv16960,nssv21597 M 31 30 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10847,NA10863,NA11830,NA12155,NA12740,NA12802,NA12872,NA18502,NA18504,NA18517,NA18537,NA18552,NA18563,NA18564,NA18572,NA18853,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19144,NA19173,NA19221,NA19240 nsv818743 10 6694791 6702141 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416256,nssv1416257 M 112 0 2 "" NA10851,NA12057 nsv517486 10 6694791 6885243 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv677978,nssv685112,nssv679163,nssv684180,nssv674359,nssv689867,nssv682252,nssv701295,nssv674968,nssv691967,nssv689480,nssv652162,nssv682481,nssv674140 M 2026 4 10 "" nsv438163 10 6695312 6702141 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470238,nssv470237 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA10851,NA12057 nsv442171 10 6697781 6704159 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" essv19047 10 6697781 6704674 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA07034 nsv466729 10 6717773 6870714 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542201 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00970 nsv24159 10 6755290 6760952 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv42737 M 24 "" nsv5709 10 6807308 6842045 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8419 S 9 0 1 "" NA12156 nsv24770 10 6898544 6898596 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43348 M 24 "" nsv522047 10 6974651 6980620 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694817 S 2026 1 0 "" nsv5720 10 7041756 7073564 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5188 S 9 1 0 "" NA19129 nsv831776 10 7056910 7215168 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448182 S 95 1 0 "" esv33831 10 7117477 7117975 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98682,essv101264,essv100645,essv101085,essv98321,essv96940,essv97811,essv95481,essv95394,essv97382,essv99074,essv96240,essv99867,essv93230,essv99628,essv92599,essv99157,essv100213 M 51 2 16 "" 21606,21618,21656,21693,21772,21817,21837,21847,21872,21879,21938,22007,22086,22170,22217,22233,22275,22286 nsv8603 10 7133008 7180070 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21584 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18517 dgv220e1 10 7136154 7179524 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv17372,esv1048,esv1297 M 271 0 0 "" NA18517 nsv525522 10 7202210 7205112 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701655 S 2026 0 1 "" nsv831777 10 7215213 7380088 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448186 S 95 1 0 "" nsv831778 10 7309813 7486069 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448187 S 95 0 1 "" nsv517524 10 7356969 7357132 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv679611,nssv672235,nssv667308,nssv658318,nssv662397,nssv688682,nssv667489,nssv678061,nssv657710,nssv652923,nssv661955,nssv691304,nssv675361,nssv668918,nssv675103,nssv673983,nssv652273,nssv691324 M 2026 0 18 "" nsv831779 10 7402163 7545264 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448188 S 95 0 1 "" nsv5731 10 7416261 7428058 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2826 S 9 1 0 "" NA18555 nsv518530 10 7441387 7447340 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695973 S 2026 0 1 "" dgv221e1 10 7463502 7777745 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv5174,esv762,esv736 M 271 0 0 "" NA18611 essv6532 10 7537823 7672510 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18611 esv34803 10 7548120 7600950 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6988224,essv6979707,essv6979706 M 771 0 1 "" NA18611 nsv24066 10 7595081 7595081 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv42644 M 24 "" nsv507534 10 7596624 7602624 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620248,nssv623179 M 4 2 0 "" NA15510,NA18994 nsv5743 10 7674698 7705435 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5196 S 9 1 0 "" NA19129 nsv518197 10 7688196 7699938 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695621 S 2026 0 1 "" nsv521675 10 7694507 7701017 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698294 S 2026 0 1 "" nsv525066 10 7756647 7762854 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701119 S 2026 0 1 "" nsv25062 10 7833837 7834057 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43640 M 24 "" nsv526356 10 8066615 8073669 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702649 S 2026 1 0 "" nsv526540 10 8093782 8106184 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702854 S 2026 0 1 "" nsv831780 10 8115361 8288189 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448189 S 95 0 1 "" nsv5754 10 8119047 8152171 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3864 S 9 1 0 "" NA12878 nsv517198 10 8126176 8138725 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv692844,nssv661956,nssv676891,nssv652234,nssv685364,nssv687099,nssv690281,nssv656197,nssv663810,nssv674076,nssv686803,nssv692443,nssv653991,nssv661823,nssv662398,nssv688950,nssv692743,nssv666743,nssv657180,nssv675440,nssv688463 M 2026 0 21 "" nsv24651 10 8166274 8167853 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43229 M 24 "" nsv518187 10 8445863 8447575 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694209 S 2026 0 1 "" nsv524933 10 8603840 8605681 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700946 S 2026 0 1 "" nsv525705 10 8677428 8678857 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701866 S 2026 1 0 "" nsv507535 10 8745028 8751028 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619282 S 4 1 0 "" NA10860 nsv5765 10 8861536 8893810 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6289 S 9 1 0 "" NA12156 nsv509342 10 8865929 8903152 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623705,nssv619288 M 4 2 0 "" NA10860,NA18994 nsv516076 10 8887771 8894344 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv666043,nssv678500,nssv679266,nssv671388,nssv686524,nssv671114 M 2026 0 6 "" nsv528875 10 8887771 8906276 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705555 S 2026 0 1 "" nsv5776 10 8915028 8949201 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3865 S 9 1 0 "" NA12878 nsv466732 10 9093138 9147141 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542202 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00021 nsv528992 10 9114133 9114909 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705694 S 2026 0 1 "" nsv520120 10 9121715 9150794 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv686378,nssv660951 M 2026 0 2 "" nsv507536 10 9319645 9325645 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620289 S 4 1 0 "" NA15510 esv2750976 10 9323510 10463600 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6985651,essv6981711,essv6981710,essv6981712,essv6985650 M 771 1 0 "" BEC_328 nsv521006 10 9340193 9342332 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697732 S 2026 0 1 "" nsv24386 10 9553979 9553979 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv42964 M 24 "" nsv528006 10 9598231 9760187 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704532 S 2026 0 1 "" nsv831782 10 9775765 9939359 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448190 S 95 1 0 "" nsv466735 10 9801744 9826027 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542203 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01272 nsv520808 10 9894021 9903992 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv678488,nssv697616,nssv684042,nssv675664 M 2026 3 1 "" nsv5787 10 9928183 9950290 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8433 S 9 0 1 "" NA12156 nsv521865 10 9971030 9974150 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694637 S 2026 0 1 "" nsv507537 10 10245963 10251963 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623251 S 4 1 0 "" NA18994 nsv831783 10 10332182 10523170 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448191 S 95 1 0 "" nsv517484 10 10696357 10699411 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv674294,nssv693928,nssv652422,nssv652161,nssv682480,nssv685024 M 2026 0 6 "" nsv507538 10 10736247 10742247 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617797,nssv620331 M 4 2 0 "" CHM,NA15510 nsv437658 10 11142770 11153628 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467539 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19202 nsv5798 10 11142861 11176316 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2830 S 9 1 0 "" NA18555 nsv438164 10 11144870 11148911 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470240,nssv470239 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA19200,NA19202 nsv24299 10 11279068 11279068 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv42877 M 24 "" nsv523553 10 11330357 11332978 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699331 S 2026 0 1 "" nsv509343 10 11351454 11395360 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623783,nssv619321 M 4 2 0 "" NA10860,NA18994 nsv507539 10 11386658 11392658 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617798 S 4 1 0 "" CHM nsv524435 10 11428849 11432673 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700365 S 2026 0 1 "" nsv5809 10 11431860 11477175 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8440 S 9 0 1 "" NA12156 nsv526496 10 11472653 11479842 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702805 S 2026 0 1 "" nsv831784 10 11517942 11696987 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448192 S 95 1 0 "" nsv515865 10 11518710 11524951 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv657607,nssv669232,nssv679038,nssv671366,nssv693050,nssv656942,nssv682950,nssv691348,nssv658588,nssv669526,nssv663719,nssv675718,nssv685084,nssv683682,nssv661131,nssv661592,nssv659913,nssv666811,nssv665076,nssv656690,nssv692700,nssv700865,nssv655351,nssv668091 M 2026 0 24 "" nsv525212 10 11518710 11533719 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701294 S 2026 0 1 "" nsv24455 10 11596325 11596325 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43033 M 24 "" nsv523722 10 11724048 11776962 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699537 S 2026 0 1 "" nsv25070 10 11764619 11764619 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43648 M 24 "" nsv516751 10 11810177 11811548 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv670629,nssv677167 M 2026 0 2 "" nsv523851 10 11887247 11922560 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699686 S 2026 1 0 "" nsv528958 10 11976596 11977543 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705654 S 2026 0 1 "" nsv831785 10 12010856 12206081 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448193,nssv1448194 M 95 2 0 "" nsv523183 10 12046364 12104875 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698896 S 2026 1 0 "" dgv37n21 10 12106033 12205253 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv515591,nsv519115 M 2026 12 0 "" dgv67n27 10 12140741 12205253 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv466737,nsv466738 M 1557 2 0 "" HGDP00905,HGDP00908 nsv818745 10 12140741 12205253 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416378 S 112 1 0 "" NA18856 nsv5820 10 12237312 12269448 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10668 S 9 1 0 "" NA18956 nsv519669 10 12369408 12370719 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696983 S 2026 0 1 "" nsv818746 10 12390693 12405881 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415979 S 112 1 0 "" NA12751 nsv517854 10 12546352 12569201 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695258 S 2026 0 1 "" nsv522620 10 12568696 12573294 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv706016 S 2026 0 1 "" nsv466740 10 12582535 12591337 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542207 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00994 nsv466741 10 12583135 12595447 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542208 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01336 nsv831786 10 12589313 12794168 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448195 S 95 0 1 "" nsv466742 10 12643918 12704580 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542209 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00057 nsv510212 10 12661937 12667937 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621300,nssv622040,nssv624235,nssv618324 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv524505 10 12662309 12674843 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700449 S 2026 0 1 "" nsv520469 10 12794868 12796155 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv671694,nssv674869 M 2026 0 2 "" nsv507540 10 12817571 12823571 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617799,nssv623324,nssv620400,nssv619047 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv24363 10 12843897 12846386 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv42941 M 24 "" nsv831787 10 12919710 12976719 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448197,nssv1448201,nssv1448200,nssv1448198,nssv1448199,nssv1448202,nssv1448205,nssv1448206,nssv1448204,nssv1448203,nssv1448208,nssv1448211,nssv1448209,nssv1448210 M 95 8 6 "" nsv518323 10 12933112 12954527 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695753 S 2026 1 0 "" nsv5831 10 12944261 12979172 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv740 S 9 1 0 "" NA19240 nsv521491 10 13014830 13016729 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698101 S 2026 1 0 "" dgv222e1 10 13089087 13104413 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv992,esv1194,essv24357 M 271 0 0 "" NA10839 nsv516198 10 13089891 13100416 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv681497,nssv693991,nssv683270,nssv690251,nssv662676,nssv683490,nssv677256,nssv672959,nssv672127,nssv662647,nssv700716,nssv655165,nssv662373,nssv668378,nssv661705,nssv661648,nssv659364,nssv656194,nssv692047,nssv681400,nssv687541,nssv659680,nssv657911,nssv684063,nssv666741,nssv668696 M 2026 0 26 "" nsv818747 10 13094485 13100416 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417959,nssv1417970 M 112 0 2 "" NA06985,NA06991 nsv442570 10 13096556 13098846 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv818748 10 13096593 13100416 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416085,nssv1416174,nssv1415773 M 112 0 3 "" NA12813,NA12875,NA12891 dgv223e1 10 13096593 13104413 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv23717,essv19373 M 271 0 0 "" NA07019,NA12813 nsv8604 10 13097235 13101506 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18124 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA10839 nsv528026 10 13309937 13315649 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704555 S 2026 0 1 "" nsv521216 10 13315559 13315649 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv685285,nssv691863 M 2026 0 2 "" nsv831788 10 13373247 13551816 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448212 S 95 0 1 "" nsv24348 10 13389542 13393158 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv42926 M 24 "" nsv508568 10 13476862 13558067 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620018 S 4 0 1 "" NA15510 nsv466743 10 13593351 13645374 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542210 S 1557 0 1 "" 1780862415_A nsv831789 10 13618087 13798901 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448222,nssv1448225,nssv1448223,nssv1448224,nssv1448221,nssv1448216,nssv1448220,nssv1448219,nssv1448213,nssv1448217,nssv1448214,nssv1448215 M 95 10 2 "" nsv831790 10 13618087 13798901 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448226 S 95 0 1 "" dgv224e1 10 13718676 13726648 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv8033,esv1156,esv1213 M 271 0 0 "" NA19103 nsv508569 10 13755703 13859356 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618771 S 4 0 1 "" NA10860 nsv516579 10 13878610 13878665 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv682445,nssv669295,nssv686154,nssv689911,nssv680572 M 2026 0 5 "" esv32672 10 13902900 13917075 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100102 S 51 1 0 "" 22086 nsv5842 10 13993864 14021704 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8445 S 9 0 1 "" NA12156 nsv528027 10 14070325 14335307 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704556 S 2026 1 0 "" nsv516253 10 14091462 14091532 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv689231,nssv674602,nssv686127,nssv689413,nssv676370,nssv667078 M 2026 0 6 "" nsv5855 10 14265283 14310252 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1864 S 9 0 1 "" NA18555 esv33167 10 14311402 14315255 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98692,essv97078 M 51 0 2 "" 21606,22075 nsv507541 10 14328396 14334396 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622824,nssv619053 M 4 2 0 "" NA10860,NA18994 nsv5866 10 14453188 14480652 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8454 S 9 1 0 "" NA12156 nsv528028 10 14482353 14645668 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704557 S 2026 1 0 "" nsv831791 10 14587870 14764245 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448227 S 95 1 0 "" nsv437659 10 14603103 14642449 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467540 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18863 nsv5877 10 14603497 14637130 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5203 S 9 1 0 "" NA19129 esv2750884 10 14678945 14722486 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6981929,essv6981930 M 771 1 0 "" BEC_502 nsv517896 10 14684773 14712127 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694178 S 2026 1 0 "" nsv5888 10 14740231 14775084 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8455 S 9 0 1 "" NA12156 nsv471664 10 14758181 14908383 CNV Gain+Loss Sharp et al 2005 15918152 BAC_aCGH,FISH Eichler Segmental Duplication BAC array nssv551007,nssv551009,nssv551012,nssv551013,nssv551008,nssv551011,nssv551010 M 48 3 4 "" NA10493,NA10494,NA10969,NA10979,NA15733,NA17014,NA17059 nsv5899 10 14885510 14919653 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8460 S 9 1 0 "" NA12156 nsv519526 10 14887155 14887710 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv662804,nssv656692 M 2026 0 2 "" nsv522481 10 14887155 14888727 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705848 S 2026 0 1 "" nsv523790 10 14887155 14896114 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699617 S 2026 0 1 "" nsv523583 10 14932416 14934907 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699372 S 2026 1 0 "" nsv469720 10 14947286 15119384 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649741 M 265 0 0 Samples from several populations that are part of the HapMap project. "" nsv831793 10 14952609 15140768 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448228 S 95 0 1 "" dgv68n27 10 14995184 15100889 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv466745,nsv466744 M 1557 2 0 "" 1780862043_A,1782681109_A dgv69n27 10 15015177 15110621 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv466746,nsv466754,nsv466749,nsv466751,nsv466748,nsv466747,nsv466752 M 1557 7 0 "" 1780862095_A,1780862378_A,HGDP00072,HGDP00464,HGDP00475,HGDP00647,NINDS_174 nsv466753 10 15030375 15100889 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542220 S 1557 0 1 "" 1780854253_A nsv520429 10 15030375 15100889 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700260,nssv677144,nssv671367,nssv699519,nssv705897 M 2026 3 2 "" nsv24586 10 15043665 15046641 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43164 M 24 "" nsv831794 10 15075663 15230896 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448230 S 95 0 1 "" nsv5910 10 15191731 15230981 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10676,nssv5214 M 9 2 0 "" NA18956,NA19129 nsv509344 10 15253461 15371797 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619475 S 4 1 0 "" NA10860 nsv5921 10 15267336 15295189 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3866 S 9 1 0 "" NA12878 nsv523449 10 15351764 15362323 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699206 S 2026 0 1 "" nsv466755 10 15416863 15559928 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542222 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00423 nsv466756 10 15433315 15497767 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542223 S 1557 0 1 "" 1780862093_A nsv24627 10 15566693 15572479 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43205 M 24 "" nsv523569 10 15673163 15681034 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699351 S 2026 1 0 "" nsv524808 10 15673163 15752451 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700800 S 2026 1 0 "" dgv38n21 10 15688249 15839648 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv521993,nsv521815 M 2026 2 0 "" nsv516700 10 15714011 15714141 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv670223,nssv691009,nssv687436 M 2026 0 3 "" esv32914 10 15734337 15734455 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100776 S 51 1 0 "" 21656 nsv831795 10 15765868 15914974 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448233,nssv1448237,nssv1448235,nssv1448236,nssv1448231,nssv1448232,nssv1448234 M 95 7 0 "" dgv12n6 10 16275961 16282481 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv24860,nsv24831 M 24 "" nsv831796 10 16280117 16433050 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448238 S 95 0 1 "" nsv25184 10 16405454 16405454 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43762 M 24 "" nsv521864 10 16426754 16429321 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694636 S 2026 0 1 "" nsv515521 10 16545723 16558413 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv653446,nssv658424,nssv697041 M 2026 0 3 "" nsv466757 10 16545723 16560790 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542224 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00747 nsv831797 10 16596515 16772314 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448239,nssv1448241,nssv1448242 M 95 0 3 "" nsv25020 10 16601164 16608064 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43598 M 24 "" nsv515767 10 16624428 16650968 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv664720,nssv665793,nssv658488,nssv663570,nssv662186,nssv663118,nssv696038,nssv670155,nssv669955,nssv654309 M 2026 0 10 "" nsv831798 10 16625687 16703675 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448268,nssv1448264,nssv1448269,nssv1448246,nssv1448270,nssv1448245,nssv1448244,nssv1448247,nssv1448243,nssv1448267,nssv1448249,nssv1448263,nssv1448248,nssv1448250,nssv1448252,nssv1448253,nssv1448254,nssv1448256,nssv1448255,nssv1448257,nssv1448258,nssv1448265,nssv1448259,nssv1448266,nssv1448261,nssv1448260 M 95 1 25 "" nsv831799 10 16713289 16884482 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448271 S 95 0 1 "" nsv24610 10 16727893 16727974 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43188 M 24 "" dgv225e1 10 16741412 16752674 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv886,essv4526,esv882 M 271 0 0 "" NA18623 nsv466758 10 16754472 17036690 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542225 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01370 nsv831800 10 16847674 17031424 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448272,nssv1448274 M 95 2 0 "" nsv5932 10 17035300 17080853 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5239 S 9 0 1 "" NA19129 nsv466759 10 17062975 17087787 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542226 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00208 nsv5943 10 17138815 17171209 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5249 S 9 1 0 "" NA19129 nsv520521 10 17138941 17139022 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv671994,nssv677604 M 2026 0 2 "" nsv831801 10 17167690 17347576 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448275 S 95 1 0 "" nsv508571 10 17281805 17378905 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622463 S 4 0 1 "" NA18994 nsv527849 10 17344934 17378015 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704347 S 2026 0 1 "" nsv5954 10 17359958 17402858 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8462 S 9 0 1 "" NA12156 nsv24310 10 17450264 17450412 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv42888 M 24 "" nsv5966 10 17517193 17551314 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3867 S 9 1 0 "" NA12878 esv33746 10 17922308 17931734 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv96699,essv98470 M 51 2 0 "" 22011,22352 nsv508572 10 17944334 18250213 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620037,nssv622481,nssv618825 M 4 0 3 "" NA10860,NA15510,NA18994 nsv528116 10 18318069 18322433 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704659 S 2026 0 1 "" nsv818749 10 18417349 18432132 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416086,nssv1416087 M 112 2 0 "" NA12801,NA12813 nsv519638 10 18448955 18454472 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696965 S 2026 0 1 "" nsv522505 10 18493215 18505485 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705873 S 2026 0 1 "" dgv13n6 10 18543082 18543596 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv24155,nsv24229 M 24 "" nsv5977 10 18693692 18727640 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv757 S 9 1 0 "" NA19240 nsv517404 10 18794501 18800641 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv664970,nssv686438,nssv651926 M 2026 3 0 "" nsv5988 10 18795777 18829313 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5250 S 9 1 0 "" NA19129 esv34545 10 18861191 18948300 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6980065,essv6980066,essv6980064 M 771 1 0 "" NA18948 dgv226e1 10 18875331 18946513 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1249,esv1118,essv3337 M 271 0 0 "" NA18948 nsv466760 10 18879356 18945941 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542227 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00397 nsv466762 10 18972178 19016665 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542228 S 1557 1 0 "" NINDS_214 nsv525910 10 19042556 19042716 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702114 S 2026 0 1 "" nsv507542 10 19196776 19202776 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622922,nssv620498,nssv619064 M 4 3 0 "" NA10860,NA15510,NA18994 nsv518006 10 19200035 19210224 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695419 S 2026 0 1 "" nsv5999 10 19203838 19239139 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9442 S 9 0 1 "" NA18517 nsv466763 10 19245109 19374643 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542229 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01406 nsv528472 10 19336756 19425254 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705075 S 2026 1 0 "" nsv516123 10 19360799 19384985 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv666361,nssv676819 M 2026 0 2 "" nsv466764 10 19440851 20019440 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542230 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01287 dgv20e55 10 19447897 19876370 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv2750885,esv2750886 M 771 0 2 "" BEC_16,SPC_38 nsv831802 10 19489267 19625894 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448276 S 95 1 0 "" nsv24740 10 19544652 19544790 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43318 M 24 "" nsv466765 10 19619812 19709373 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542231 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01285 essv7876 10 19734150 19780641 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19140 dgv227e1 10 19734150 20065000 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv7262,esv813,esv787 M 271 0 0 "" NA18592 nsv818750 10 19750338 19778819 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415928 S 112 0 1 "" NA19140 nsv466766 10 19766951 19798599 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542232 S 1557 0 1 "" 1798860114_A nsv8605 10 19786013 19794808 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20311,nssv16601,nssv17724,nssv16925,nssv19127,nssv18528,nssv19568,nssv18697,nssv21501,nssv19079,nssv17182,nssv18154,nssv17846,nssv21893 M 31 0 14 Samples from several populations that are part of the HapMap project. "" NA10839,NA10847,NA11830,NA12155,NA12872,NA18563,NA18564,NA18860,NA18942,NA18972,NA18975,NA19007,NA19173,NA19240 nsv6010 10 19792324 19836701 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4619 S 9 0 1 "" NA19129 nsv8606 10 19804479 19808327 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18406 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18552 essv6443 10 19816916 20045002 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18592 esv34306 10 19817075 20157950 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6979631,essv6979632,essv6979633,essv6988211,essv6988210 M 771 0 1 "" NA18592 nsv24730 10 19826316 19830706 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43308 M 24 "" nsv8607 10 19849781 19852667 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19139,nssv18558,nssv20341 M 31 0 3 Samples from several populations that are part of the HapMap project. "" NA18564,NA19173,NA19240 nsv831804 10 19899406 20075599 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448277 S 95 1 0 "" nsv523490 10 20014936 20081152 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699257 S 2026 0 1 "" nsv8608 10 20036464 20038624 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16955,nssv18675,nssv20802,nssv17876,nssv18466,nssv19598,nssv18816,nssv19023,nssv17702,nssv16819,nssv18184,nssv19157,nssv23338,nssv18727 M 31 0 14 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10847,NA10863,NA11830,NA12155,NA18502,NA18537,NA18552,NA18563,NA18572,NA19007,NA19221 nsv433509 10 20037021 20038057 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463390 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA18555 nsv24525 10 20295378 20295378 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43103 M 24 "" dgv228e1 10 20324355 20366013 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv20718,esv970,esv1292,essv17417 M 271 0 0 "" NA12752,NA12760 esv34798 10 20324355 20377124 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6978891,essv6978892,essv6988066 M 771 0 1 "" NA12760 esv35130 10 20339828 20368329 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6978870,essv6988063 M 771 0 1 "" NA12752 nsv438165 10 20344631 20359198 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470245,nssv470244,nssv470242,nssv470243 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA12752,NA12760 nsv437096 10 20355379 20370658 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv466977 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA12752 nsv510213 10 20431879 20437879 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622189 S 4 0 1 "" NA10860 dgv70n27 10 20491614 20536276 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv466768,nsv466767 M 1557 0 2 "" HGDP00671,NINDS_183 nsv520788 10 20568678 20645194 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697610 S 2026 0 1 "" nsv520736 10 20671419 20902433 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697582 S 2026 1 0 "" dgv229e1 10 20726725 20949210 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv24469,essv22353,essv20300,essv1269,essv4600,essv5849,essv22825,essv22075,essv2258,essv7789,essv6130,essv5402,essv16720,essv4832,essv21042,essv7187,essv18592,essv20381,essv7359,essv21297,essv14203,essv4411,essv5176,essv22942,essv2966,essv23352,essv6283,essv22894,essv6376,essv20963,essv17653,esv856,esv659,essv23060,essv23678,essv4901,essv19645,essv21777,essv23563,essv7719,essv19766,essv4641,essv21554,essv24062,essv18704,essv22764,essv24137,essv21679,essv226,essv18961,essv20187,essv20623,essv18191,essv1968,essv22003,essv6908,essv7559 M 271 0 0 "" NA06985,NA06991,NA06993,NA07019,NA07056,NA07357,NA10830,NA10835,NA10847,NA10855,NA10859,NA10863,NA11832,NA11881,NA11995,NA12004,NA12005,NA12056,NA12057,NA12144,NA12154,NA12155,NA12234,NA12239,NA12248,NA12750,NA12760,NA12801,NA12812,NA12873,NA12874,NA18524,NA18532,NA18540,NA18545,NA18547,NA18558,NA18561,NA18563,NA18570,NA18572,NA18573,NA18594,NA18605,NA18611,NA18633,NA18636,NA18948,NA18959,NA18966,NA18981,NA18995,NA19140,NA19142 nsv8609 10 20733816 20735002 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20371 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19240 nsv528798 10 20739556 20823719 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705471 S 2026 0 1 "" esv34621 10 20786200 20949210 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6979294,essv6979293,essv6979292,essv6988146,essv6988145 M 771 0 1 "" NA18524 nsv466769 10 20818447 20854589 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542235 S 1557 1 0 "" 1780862431_A essv7891 10 20822154 20895478 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19140 nsv516763 10 20823719 20902433 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv682550,nssv686155,nssv689564,nssv669333,nssv686439,nssv687660,nssv663437,nssv691578,nssv670059,nssv688713,nssv655546,nssv672234,nssv657452,nssv658408,nssv668527,nssv692416,nssv653110,nssv683459,nssv655517,nssv664971,nssv688809,nssv693992,nssv676539,nssv662854,nssv681761,nssv658425,nssv692048,nssv667043,nssv652921,nssv658589,nssv688600,nssv670578,nssv688183,nssv669826,nssv658165,nssv691710,nssv668239,nssv686175,nssv653276,nssv688101,nssv693025,nssv656111,nssv662677,nssv692186,nssv676515,nssv672388,nssv680610,nssv666712,nssv653453,nssv655705,nssv690507,nssv689112,nssv690436,nssv686016,nssv668092,nssv677168,nssv677466,nssv670978,nssv677487,nssv700957,nssv673136,nssv656581,nssv689535,nssv671426,nssv665857,nssv685790,nssv687763,nssv655658,nssv664865,nssv689621,nssv683503,nssv661314,nssv687342,nssv685529,nssv702996,nssv674043,nssv688437,nssv677294,nssv652006,nssv652972,nssv673499,nssv678961,nssv674522,nssv683819,nssv691617,nssv655623,nssv668398,nssv687713,nssv659365,nssv683556,nssv663606,nssv690279,nssv675997,nssv676567,nssv653669,nssv675957,nssv685741,nssv691894,nssv689371,nssv670684,nssv686414,nssv687315,nssv688830,nssv683530,nssv687904,nssv668874,nssv677079,nssv663368,nssv684329,nssv653716,nssv693346,nssv664575,nssv671102,nssv687542,nssv692772,nssv687687,nssv660098,nssv677687,nssv664274,nssv680581,nssv671255,nssv658992,nssv660167,nssv682315,nssv689414,nssv677783,nssv679534,nssv682998,nssv662899,nssv663347,nssv665758,nssv693181,nssv663918,nssv686128,nssv700404,nssv681438,nssv676230,nssv685770,nssv668328,nssv673841,nssv663410,nssv670528,nssv653529,nssv681401,nssv681015,nssv692355,nssv675124,nssv693367,nssv655227,nssv677210,nssv689698,nssv692829,nssv691098,nssv670280,nssv684539,nssv676138,nssv702284,nssv668697,nssv652360,nssv686395,nssv673891,nssv676890,nssv656911,nssv667960,nssv687747,nssv656319,nssv668917,nssv684144,nssv688366,nssv666013,nssv652318,nssv691934,nssv676351,nssv689883,nssv663037,nssv688736,nssv652704,nssv680640,nssv692593,nssv678660,nssv661345,nssv653939,nssv664180,nssv671285,nssv685633,nssv681243,nssv665682,nssv687952,nssv670927,nssv655836 M 2026 31 159 "" dgv71n27 10 20830090 20862612 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv466770,nsv466774,nsv466773,nsv466771 M 1557 4 0 "" 1780854384_A,1780862202_A,1780862263_A,NINDS_134 nsv8610 10 20852639 20860864 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20832 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18502 essv6854 10 20862612 20895478 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18558 nsv8611 10 20866873 20890946 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19187 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18563 nsv466775 10 20871602 20894603 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542241 S 1557 0 1 "" 1780854455_A dgv72n27 10 20872418 20905163 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv466778,nsv466776,nsv466777 M 1557 0 3 "" HGDP00779,HGDP01103,HGDP01187 dgv230e1 10 20876432 20895478 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv18682,essv2369,essv19357,essv7629,essv1576,essv7489,essv24200,essv25050,essv21941,essv19825,essv20538,essv23100 M 271 0 0 "" NA06985,NA07000,NA07056,NA10847,NA11995,NA12043,NA12056,NA12801,NA18547,NA18561,NA18995,NA18997 dgv231e1 10 20877001 20907987 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv22716,essv6107,essv4312,essv24013,essv24603,essv22699,essv18001 M 271 0 0 "" NA12004,NA12005,NA12239,NA12873,NA12875,NA18564,NA18573 dgv232e1 10 20880641 20923419 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv21934,essv20732,essv19478,essv7459,essv6488 M 271 0 0 "" NA07357,NA12057,NA12750,NA18633,NA18636 dgv233e1 10 20880641 20949210 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv21888,essv19841,essv19741,essv18049 M 271 0 0 "" NA06991,NA06993,NA10859,NA12234 nsv8612 10 20883329 20902911 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19628,nssv16849,nssv18205,nssv16985,nssv17762,nssv18846,nssv18588,nssv19119 M 31 0 8 Samples from several populations that are part of the HapMap project. "" NA07029,NA10847,NA10863,NA12155,NA12740,NA18564,NA18572,NA18980 dgv21n17 10 20883541 20906334 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437103,nsv437105,nsv437101,nsv437097,nsv437099,nsv437100,nsv437098,nsv437104 M 60 0 8 "" NA07019,NA07029,NA10830,NA10835,NA10847,NA10861,NA10863,NA12801 nsv442571 10 20890118 20893540 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv466779 10 20890630 20892021 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542245 S 1557 0 1 "" 1780862306_A dgv73n27 10 20890630 20894603 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv466813,nsv466825,nsv466828,nsv466784,nsv466829,nsv466792,nsv466790,nsv466806,nsv466815,nsv466795,nsv466803,nsv466811,nsv466788,nsv466785,nsv466793,nsv466797,nsv466786,nsv466801,nsv466799,nsv466804,nsv466820,nsv466809,nsv466819,nsv466802,nsv466791,nsv466789,nsv466824,nsv466822,nsv466817,nsv466818,nsv466781,nsv466796,nsv466787,nsv466821,nsv466814,nsv466798,nsv466782,nsv466823,nsv466812,nsv466800,nsv466808,nsv466807,nsv466780,nsv466810,nsv466826 M 1557 0 45 "" 1780854184_A,1780854302_A,1780854436_A,1780854594_A,1780862014_A,1780862108_A,1780862175_A,1780862373_A,1780862408_A,1780862517_A,1780862518_A,1780862539_A,1780862598_A,1782681142_A,1782681195_A,1798860072_A,1798860084_A,1798860280_A,1798860565_A,HGDP00003,HGDP00007,HGDP00033,HGDP00120,HGDP00131,HGDP00251,HGDP00524,HGDP00560,HGDP00575,HGDP00581,HGDP00583,HGDP00594,HGDP00613,HGDP00677,HGDP00739,HGDP00769,HGDP01167,HGDP01223,HGDP01327,HGDP01369,NINDS_127,NINDS_159,NINDS_219,NINDS_239,NINDS_51,NINDS_86 nsv818751 10 20890630 20894603 CNV Gain+Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417351,nssv1417981,nssv1418386,nssv1415982,nssv1415587,nssv1415776,nssv1418089,nssv1416259,nssv1415980,nssv1417773,nssv1418088,nssv1415774,nssv1415586,nssv1415775,nssv1417772,nssv1417049,nssv1417051,nssv1418384,nssv1417724,nssv1418385,nssv1415981,nssv1417993,nssv1416258,nssv1418004 M 112 1 23 "" NA06985,NA06991,NA06993,NA07000,NA07029,NA10830,NA10847,NA10859,NA10863,NA11881,NA12056,NA12057,NA12146,NA12154,NA12234,NA12239,NA12740,NA12750,NA12751,NA12865,NA12874,NA12875,NA18612,NA19003 nsv466830 10 20890630 20905163 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542292 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01171 nsv466831 10 20890630 20917787 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542293 S 1557 0 1 "" NINDS_84 esv33297 10 20890924 20894590 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101542,essv93893,essv95746,essv99732,essv92530,essv99228,essv99483,essv94230 M 51 0 8 "" 21603,21634,21841,22217,22233,22275,22335,22394 dgv234e1 10 20891019 20895478 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv18470,essv2757,essv18869,essv18809,essv5080,essv21577,essv7506,essv24201,essv5652,essv21471,essv17682,essv19141,essv15979,essv18791 M 271 0 0 "" NA07029,NA10830,NA10835,NA11832,NA12144,NA12146,NA12248,NA12812,NA12891,NA18526,NA18532,NA18570,NA19000,NA19142 dgv235e1 10 20891019 20902433 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv20808,essv17406,essv6408,essv5701,essv4534,essv1295,essv7060,essv6806,essv20490 M 271 0 0 "" NA10855,NA12760,NA12874,NA18545,NA18550,NA18566,NA18594,NA18612,NA18980 dgv236e1 10 20891019 20907987 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv22623,essv21750,essv2120,essv23714,essv24453,essv3317,essv3625 M 271 0 0 "" NA10861,NA12154,NA12740,NA12865,NA18948,NA18959,NA18966 dgv237e1 10 20891019 20917501 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv950,essv21596,essv20972,essv746 M 271 0 0 "" NA10863,NA12155,NA18981,NA19003 essv19366 10 20891019 20932759 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA07019 nsv438166 10 20891214 20895478 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470253,nssv470248,nssv470261,nssv470255,nssv470256,nssv470251,nssv470260,nssv470257,nssv470264,nssv470250,nssv470265,nssv470254,nssv470246,nssv470247,nssv470258,nssv470249,nssv470266,nssv470259,nssv470262 M 269 0 18 Samples from several populations that are part of the HapMap project. "" NA07000,NA07019,NA07029,NA07056,NA10830,NA10835,NA10847,NA10861,NA10863,NA11995,NA12154,NA12234,NA12239,NA12248,NA12801,NA12812,NA19140,NA19142 dgv22n17 10 20891214 20906334 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437660,nsv437106 M 60 0 2 "" NA10859,NA19142 nsv466832 10 20892021 20894603 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542294 S 1557 0 1 "" 1780854103_A nsv831805 10 20927963 21027163 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448278 S 95 1 0 "" nsv6021 10 20955488 20971140 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8484 S 9 0 1 "" NA12156 nsv519029 10 20971045 20985819 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696498 S 2026 0 1 "" nsv831806 10 21413644 21559356 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448279 S 95 1 0 "" nsv507543 10 21446320 21452320 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619070,nssv617800,nssv620502 M 4 3 0 "" CHM,NA10860,NA15510 nsv508573 10 21497011 21565652 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622534 S 4 0 1 "" NA18994 nsv507544 10 21548890 21554890 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619074 S 4 1 0 "" NA10860 nsv831807 10 21549191 21728049 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448280 S 95 1 0 "" nsv24958 10 21562692 21562808 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43536 M 24 "" nsv24442 10 21570224 21574104 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43020 M 24 "" nsv527055 10 21804025 21862862 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703431 S 2026 0 1 "" nsv517469 10 21823640 21862862 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv677688,nssv689498,nssv684817,nssv664604,nssv658409,nssv652113 M 2026 0 6 "" nsv507545 10 22184582 22190582 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620506,nssv622983,nssv619083 M 4 3 0 "" NA10860,NA15510,NA18994 nsv831808 10 22227856 22397820 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448281 S 95 1 0 "" nsv6032 10 22724755 22759289 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv775 S 9 1 0 "" NA19240 nsv831809 10 22958107 23109682 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448282,nssv1448285,nssv1448283 M 95 3 0 "" nsv466833 10 23090689 23150803 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542295 S 1557 0 1 "" 1780854255_A nsv25129 10 23440721 23440774 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43707 M 24 "" nsv831810 10 23485653 23645276 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448287,nssv1448286 M 95 2 0 "" nsv6043 10 23663470 23697256 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8489 S 9 1 0 "" NA12156 nsv831811 10 23774332 23953376 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448288,nssv1448289,nssv1448290 M 95 0 3 "" nsv466835 10 23841561 23909181 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542296 S 1557 1 0 "" 1780862487_A nsv6054 10 24094677 24126978 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6315 S 9 1 0 "" NA12156 nsv6065 10 24190015 24222059 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5270 S 9 1 0 "" NA19129 nsv442172 10 24201315 24206054 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv6077 10 24280490 24290152 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8504 S 9 0 1 "" NA12156 nsv6088 10 24311666 24344880 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv786 S 9 1 0 "" NA19240 nsv24699 10 24409794 24413848 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43277 M 24 "" nsv437661 10 24416522 24425378 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467542 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19173 nsv442572 10 24417680 24419045 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv25425 10 24579549 24583791 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv44003 M 24 "" nsv520378 10 24594202 24722946 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697381 S 2026 0 1 "" nsv517235 10 24628738 24633082 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv693274,nssv658553,nssv692417,nssv682281,nssv661164,nssv669786,nssv663638,nssv693867,nssv665552,nssv693622,nssv674651,nssv670461,nssv652855,nssv659914,nssv658375,nssv689448,nssv673154,nssv665258,nssv653234,nssv660115,nssv671582,nssv688543,nssv679609,nssv673555,nssv674740,nssv655129,nssv672364,nssv675360,nssv685156,nssv654944,nssv675302,nssv657829,nssv689565,nssv683179,nssv657653,nssv692842,nssv684793,nssv668300,nssv660206,nssv672755,nssv682586,nssv674191,nssv680078,nssv690121,nssv664545,nssv684818,nssv679291,nssv691520,nssv692742,nssv693051,nssv689372,nssv666640,nssv692830,nssv669545,nssv683460,nssv665947,nssv677649,nssv666247,nssv652650,nssv666742,nssv661379,nssv667417,nssv683271,nssv682126,nssv686176,nssv679771,nssv656195,nssv692464,nssv673981,nssv654090,nssv658316,nssv675689,nssv704251,nssv674327,nssv661061,nssv690205,nssv662071,nssv674523,nssv691150,nssv678583,nssv682164,nssv682693,nssv659702,nssv667614,nssv662900,nssv657337,nssv655659,nssv657680,nssv665377,nssv663809,nssv652361,nssv687924,nssv689699,nssv679708,nssv656943,nssv674766,nssv663661,nssv666117,nssv692682,nssv663791,nssv652922,nssv677806,nssv653252,nssv686670,nssv676677,nssv661822,nssv678162,nssv666812,nssv667021 M 2026 0 109 "" nsv466836 10 24761568 24812730 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542297 S 1557 0 1 "" 1780862484_A nsv7200 10 24821446 24850830 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3868 S 9 0 0 "" NA12878 nsv437662 10 24888155 24892371 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467543 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19208 nsv6099 10 24926597 24956736 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5278 S 9 1 0 "" NA19129 nsv24606 10 25075193 25075288 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43184 M 24 "" nsv24532 10 25138096 25138433 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43110 M 24 "" nsv510214 10 25221106 25227106 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624034 S 4 0 1 "" NA18994 nsv25401 10 25678293 25678839 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43979 M 24 "" nsv509345 10 25744712 25764286 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618080,nssv619611 M 4 2 0 "" CHM,NA10860 nsv51 10 25766227 25772423 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv51 S 1 1 0 "" NA15510 nsv6110 10 25766227 25772423 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv11236 S 9 1 0 "" NA15510 nsv521776 10 26006375 26006736 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694543 S 2026 0 1 "" nsv6121 10 26723708 26737313 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9933 S 9 0 1 "" NA18507 nsv442173 10 26726161 26729771 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv24111 10 26807948 26808253 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv42689 M 24 "" nsv520311 10 26863051 26863947 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697340 S 2026 1 0 "" nsv523178 10 26863051 26868895 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698891 S 2026 0 1 "" nsv466837 10 26898866 26906426 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542298 S 1557 0 1 "" 1780862093_A nsv516275 10 26936438 27008177 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv670462,nssv690929,nssv703991,nssv667261 M 2026 1 3 "" nsv24807 10 27038983 27042120 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43385 M 24 "" nsv831812 10 27101512 27274273 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448291 S 95 1 0 "" nsv6132 10 27106087 27115528 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1883 S 9 0 1 "" NA18555 nsv6143 10 27199038 27233033 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3869,nssv9779,nssv5284,nssv6333,nssv797,nssv10716,nssv1887 M 9 7 0 "" NA12156,NA12878,NA18507,NA18555,NA18956,NA19129,NA19240 dgv238e1 10 27200938 27269999 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv19744,esv1212,esv1178,essv24336 M 271 0 0 "" NA10859,NA11882 nsv509347 10 27207704 27243898 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623536,nssv619616,nssv620974 M 4 3 0 "" NA10860,NA15510,NA18994 nsv510988 10 27207704 27337046 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618610 S 4 0 0 "" CHM dgv239e1 10 27232285 27269999 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv21631,essv20467,essv22725,essv21586,essv19120,essv23152,essv20839,essv17856,essv19883,essv25113,essv18492,essv24454,essv19832,essv19308 M 271 0 0 "" NA07022,NA07348,NA10831,NA10847,NA10856,NA10857,NA11829,NA11881,NA12044,NA12146,NA12156,NA12239,NA12249,NA12865 nsv6154 10 27252512 27266026 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8520 S 9 1 0 "" NA12156 dgv240e1 10 27262326 27269933 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv20744,essv23751,essv19380 M 271 0 0 "" NA07019,NA07357,NA11994 essv22257 10 27265653 27268445 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA11992 esv2750887 10 27265653 27268445 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6987271,essv6988948 M 771 1 0 "" SPC_6 dgv241e1 10 27265653 27269933 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv20719,essv25069,essv17677 M 271 0 0 "" NA10835,NA12752,NA12892 esv2750888 10 27265653 27281786 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6988848,essv6987681 M 771 1 0 "" SPC_18 nsv442174 10 27265911 27268479 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" esv2422253 10 27471372 27615376 CNV Deletion Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161310 S 181 0 1 "" ND01701 nsv25396 10 27505035 27507330 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43974 M 24 "" nsv8614 10 27544493 27868412 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20713 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18504 nsv509348 10 27628782 27672499 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623567,nssv619623 M 4 2 0 "" NA10860,NA18994 esv2750889 10 27642965 27746607 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6982129,essv6989580,essv6982127,essv6982128 M 771 0 1 "" BEC_522 dgv74n27 10 27652366 27753531 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv466843,nsv466841,nsv466844,nsv466842 M 1557 0 4 "" 1780854079_A,HGDP00684,HGDP00733,HGDP01177 nsv517741 10 27656549 27745861 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv664099,nssv670529,nssv676540,nssv677295,nssv679772,nssv653072,nssv668840,nssv667418,nssv669353,nssv683820 M 2026 0 10 "" nsv6165 10 27662539 27694593 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1888 S 9 0 1 "" NA18555 dgv75n27 10 27688075 27745861 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv466852,nsv466849,nsv466848,nsv466847,nsv466851 M 1557 0 5 "" 1780854318_A,1780862197_A,1798860186_A,HGDP00054,NINDS_78 esv2750890 10 27709485 27814507 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6989709,essv6989336,essv6982945 M 771 0 1 "" BEC_529 nsv466854 10 27709830 27738957 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542310 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00590 nsv6176 10 27882185 27914807 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10720 S 9 1 0 "" NA18956 nsv831813 10 28057612 28240657 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448292 S 95 0 1 "" nsv25294 10 28152794 28153109 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43872 M 24 "" nsv831815 10 28275667 28447539 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448293,nssv1448294 M 95 0 2 "" nsv831816 10 28344704 28533641 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448297 S 95 1 0 "" nsv522191 10 28369690 28377284 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694966 S 2026 1 0 "" nsv525448 10 28377576 28603738 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701576 S 2026 0 1 "" nsv831817 10 28409842 28579936 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448298 S 95 0 1 "" nsv520842 10 28459766 28462714 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv676314,nssv685025,nssv688923,nssv684159 M 2026 0 4 "" nsv521428 10 28462714 28463210 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698038 S 2026 0 1 "" nsv521787 10 28498908 28504759 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694555 S 2026 0 1 "" nsv6188 10 28529082 28554074 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv801 S 9 0 1 "" NA19240 nsv6199 10 28595521 28603210 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8530 S 9 0 1 "" NA12156 dgv5n64 10 28602653 28611866 CNV Loss Wang_et_al_2007 17921354 SNP_array nsv818753,nsv818752 M 112 0 3 "" NA18856,NA19093,NA19094 nsv466856 10 28602653 28611866 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542311 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01028 nsv437663 10 28602653 28625502 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467544 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19094 nsv515548 10 28604738 28619975 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv664059,nssv681776,nssv671042,nssv689794,nssv677353,nssv675537,nssv687437,nssv686096,nssv675278,nssv663877,nssv689015,nssv667241,nssv692794,nssv655380,nssv669862,nssv693090,nssv671218 M 2026 0 17 "" nsv442175 10 28604766 28609676 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv438167 10 28607813 28609965 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470267,nssv470268 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA19093,NA19094 nsv818754 10 28607813 28611866 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416380 S 112 0 1 "" NA18857 nsv24600 10 29126510 29128231 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43178 M 24 "" nsv25151 10 29230788 29230847 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43729 M 24 "" nsv831818 10 29526372 29717139 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448299,nssv1448300,nssv1448301,nssv1448302 M 95 4 0 "" nsv24225 10 29591982 29592033 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv42803 M 24 "" nsv517926 10 29613720 29631707 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695337 S 2026 0 1 "" nsv526199 10 29616420 29619488 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702462 S 2026 0 1 "" nsv508574 10 29636606 29641437 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620052 S 4 0 1 "" NA15510 nsv519798 10 29661425 29829100 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694347 S 2026 0 1 "" dgv14n6 10 29752152 29752735 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv24653,nsv25039 M 24 "" nsv6210 10 29810091 29831993 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8537 S 9 0 1 "" NA12156 nsv6221 10 29823829 29857238 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8546 S 9 1 0 "" NA12156 nsv831819 10 29843746 30010541 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448304,nssv1448303,nssv1448305 M 95 0 3 "" nsv528427 10 29940670 29941083 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705020 S 2026 0 1 "" nsv24186 10 29959045 29964690 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv42764 M 24 "" nsv519699 10 30003893 30007652 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696999 S 2026 0 1 "" nsv466857 10 30285567 30305099 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542312 S 1557 0 1 "" 1780854097_A nsv831820 10 30404260 30590460 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448306 S 95 1 0 "" nsv6232 10 30485434 30530328 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8555 S 9 0 1 "" NA12156 esv33433 10 30574079 30574798 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97556 S 51 0 1 "" 21616 nsv509349 10 30652786 30706986 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623605 S 4 1 0 "" NA18994 nsv831821 10 30675156 30865135 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448308,nssv1448311,nssv1448309,nssv1448313,nssv1448312,nssv1448319,nssv1448314,nssv1448315,nssv1448317,nssv1448316,nssv1448310 M 95 0 11 "" nsv507546 10 30695987 30701987 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620522 S 4 1 0 "" NA15510 nsv507547 10 30714954 30720954 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619096 S 4 1 0 "" NA10860 nsv831822 10 30788261 30957249 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448320 S 95 1 0 "" nsv510215 10 31178869 31184869 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621392,nssv624116 M 4 0 2 "" NA15510,NA18994 nsv508575 10 31261300 31305184 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617377 S 4 0 1 "" CHM nsv6243 10 31265322 31293711 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6345 S 9 0 1 "" NA12156 dgv23n17 10 31285335 31295726 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437110,nsv437108,nsv437109,nsv437107 M 60 0 4 "" NA07019,NA07348,NA10839,NA10851 nsv831823 10 31342301 31516755 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448321 S 95 1 0 "" nsv525670 10 31442773 31450100 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701827 S 2026 0 1 "" nsv818756 10 31442773 31452942 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417052 S 112 0 1 "" NA07000 nsv509350 10 31554611 31564093 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619629 S 4 1 0 "" NA10860 nsv831824 10 31619726 31669689 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448323,nssv1448322 M 95 0 2 "" nsv831826 10 31711322 31868133 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448324 S 95 0 1 "" nsv24963 10 32249050 32249383 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43541 M 24 "" nsv6254 10 32265946 32310924 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8568 S 9 0 1 "" NA12156 nsv442176 10 32290286 32306951 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv39n21 10 32296877 32306648 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv527111,nsv521373 M 2026 0 2 "" nsv6265 10 32311160 32312621 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2838 S 9 1 0 "" NA18555 nsv6276 10 32509388 32543048 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv810 S 9 1 0 "" NA19240 nsv525503 10 32551483 32552426 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701635 S 2026 0 1 "" esv2750500 10 32571978 32576385 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100836 S 51 0 1 "" 21656 dgv242e1 10 32991417 33000799 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1045,essv18457,esv1112 M 271 0 0 "" NA11832 dgv40n21 10 32992035 33021833 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv524105,nsv523613 M 2026 0 2 "" nsv831827 10 33146672 33314838 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448325 S 95 0 1 "" nsv6287 10 33183691 33216129 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv819 S 9 1 0 "" NA19240 nsv831828 10 33304233 33438948 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448327,nssv1448328,nssv1448326 M 95 0 3 "" nsv831829 10 33507238 33673047 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448330 S 95 0 1 "" nsv24782 10 33532647 33532935 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43360 M 24 "" nsv6299 10 33543250 33602116 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10748,nssv3871 M 9 2 0 "" NA12878,NA18956 nsv528133 10 33606942 33608941 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704678 S 2026 0 1 "" nsv526052 10 33988001 34050796 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702289 S 2026 1 0 "" nsv523764 10 34330002 34330131 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699585 S 2026 0 1 "" nsv831830 10 34351870 34487725 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448332,nssv1448331 M 95 2 0 "" nsv6310 10 34402278 34435514 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1889 S 9 1 0 "" NA18555 nsv524046 10 34499356 34981140 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699910 S 2026 0 1 "" nsv466859 10 34539653 34603931 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542313 S 1557 0 1 "" 1788485381_A nsv442177 10 34557071 34562360 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv528333 10 34712469 34846750 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704915 S 2026 1 0 "" nsv466860 10 34712469 35384975 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542314 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00719 nsv24936 10 34724475 34724799 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43514 M 24 "" nsv527577 10 34726073 34732241 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704038 S 2026 0 1 "" nsv518288 10 34815751 34846750 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695719 S 2026 1 0 "" nsv520991 10 34917269 34938885 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697725 S 2026 0 1 "" nsv525336 10 34954177 34998435 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701454 S 2026 0 1 "" nsv526446 10 35011395 35012850 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702749 S 2026 0 1 "" nsv466862 10 35024890 35340629 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542316 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00929 nsv521667 10 35024965 35295871 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698286 S 2026 1 0 "" dgv76n27 10 35060644 35194352 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv466863,nsv466866 M 1557 2 0 "" HGDP00886,HGDP00956 dgv77n27 10 35076853 35115823 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv466865,nsv466864 M 1557 2 0 "" 1780854336_A,NINDS_119 nsv466867 10 35092218 35142824 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542321 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00183 nsv525060 10 35115823 35349373 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701111 S 2026 1 0 "" nsv24473 10 35136948 35146056 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43051 M 24 "" nsv519128 10 35194352 35276450 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696606 S 2026 1 0 "" nsv508576 10 35202038 35225111 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618901 S 4 0 1 "" NA10860 nsv507548 10 35203952 35209952 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620529 S 4 1 0 "" NA15510 nsv516936 10 35290209 35291231 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv671357,nssv655055,nssv678427 M 2026 0 3 "" nsv6321 10 35293814 35326181 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3872 S 9 1 0 "" NA12878 nsv466869 10 35295871 35381307 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542322 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00618 nsv466870 10 35340629 35378705 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542323 S 1557 0 1 "" 1780854255_A nsv507549 10 35407780 35413780 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620533 S 4 1 0 "" NA15510 nsv6332 10 35613763 35658796 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8575 S 9 0 1 "" NA12156 nsv6343 10 35897072 35923172 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6353 S 9 1 0 "" NA12156 nsv466871 10 35929533 36002893 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542324 S 1557 0 1 "" 1780862415_A nsv521143 10 35953211 35976759 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697812 S 2026 0 1 "" nsv6354 10 36084304 36129124 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8592 S 9 0 1 "" NA12156 nsv24466 10 36259668 36261072 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43044 M 24 "" esv33103 10 36259824 36260926 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99312 S 51 0 1 "" 22275 esv32819 10 36286382 36288172 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98361 S 51 0 1 "" 22352 nsv831831 10 36343124 36519689 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448344,nssv1448343,nssv1448338,nssv1448335,nssv1448337,nssv1448339,nssv1448334,nssv1448333,nssv1448341,nssv1448342,nssv1448336 M 95 11 0 "" nsv523450 10 36576180 36601644 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699207 S 2026 0 1 "" nsv6365 10 36774778 36803409 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2843,nssv10752 M 9 2 0 "" NA18555,NA18956 nsv526164 10 36935290 36937656 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702423 S 2026 0 1 "" nsv24559 10 37141774 37141994 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43137 M 24 "" nsv6376 10 37274725 37319882 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8598 S 9 0 1 "" NA12156 nsv520049 10 37290394 37311651 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv687284,nssv660286 M 2026 0 2 "" dgv243e1 10 37325769 37665705 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv332,esv91,essv3380,essv17477 M 271 0 0 "" NA12762,NA18945 nsv8615 10 37346229 37348676 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18214 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA10839 nsv6387 10 37381982 37416509 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2844 S 9 1 0 "" NA18555 nsv518524 10 37383602 37384534 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695965 S 2026 0 1 "" nsv7201 10 37390727 37478022 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv836,nssv11238,nssv827,nssv1890 M 9 0 0 "" NA15510,NA18555,NA19240 nsv6398 10 37403212 37434319 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8606 S 9 0 1 "" NA12156 nsv831832 10 37406137 37603764 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448345,nssv1448346 M 95 1 1 "" nsv509351 10 37456542 37462577 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619633 S 4 1 0 "" NA10860 nsv8616 10 37482743 37530033 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23366,nssv18787,nssv16990,nssv16631,nssv18705,nssv20773,nssv17045,nssv18496,nssv19053,nssv17906,nssv19149,nssv18817,nssv18735,nssv21531,nssv17792,nssv16879,nssv18795,nssv17015,nssv18235,nssv19658,nssv18380,nssv18876,nssv18244 M 31 1 18 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10847,NA10863,NA11830,NA12155,NA12740,NA12802,NA12872,NA18504,NA18537,NA18552,NA18572,NA18853,NA18860,NA18980,NA19007,NA19221 nsv6410 10 37485138 37507450 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10753,nssv9793,nssv6364,nssv5285 M 9 4 0 "" NA12156,NA18507,NA18956,NA19129 nsv508577 10 37508284 37520054 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617378 S 4 0 1 "" CHM nsv6421 10 37512168 37528809 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1891,nssv6375 M 9 2 0 "" NA12156,NA18555 nsv6432 10 37562185 37596620 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3873 S 9 1 0 "" NA12878 esv2750892 10 37565600 37773387 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6984993,essv6990057,essv6990058,essv6984995,essv6984994 M 771 0 1 "" SPC_3 nsv8617 10 37855807 37917337 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21614,nssv23424 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18517,NA19221 dgv24n17 10 37856516 37880205 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437664,nsv437665 M 60 0 2 "" NA18500,NA18872 nsv438168 10 37857888 37858922 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470270,nssv470272,nssv470269,nssv470271 M 269 0 4 Samples from several populations that are part of the HapMap project. "" NA18500,NA18501,NA18871,NA18872 nsv507550 10 37860812 37866812 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617801,nssv623107,nssv620539,nssv619115 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 dgv244e1 10 37971818 37998918 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv21363,esv1281,esv1216,essv12866 M 271 0 0 "" NA10860,NA18502 nsv6443 10 37989710 38035276 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6386 S 9 0 1 "" NA12156 nsv6454 10 38189170 38224169 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv846 S 9 1 0 "" NA19240 nsv24751 10 38235007 38236244 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43329 M 24 "" nsv6465 10 38417668 38462131 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4623 S 9 0 1 "" NA19129 nsv524757 10 38485008 38491647 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700748 S 2026 0 1 "" esv33710 10 38585904 38711295 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97338 S 51 0 1 "" 21879 essv18036 10 38717029 38996885 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA06993 dgv245e1 10 38717029 39194941 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv503,esv685 M 271 "" dgv246e1 10 38908842 39194941 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1228,essv12221,essv8244,essv5348,essv11569,essv17287,essv15297 M 271 0 0 "" NA18563,NA18856,NA18862,NA18995,NA19101,NA19116,NA19173 nsv510989 10 38909307 39025852 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624338,nssv622400 M 4 0 0 "" NA10860,NA18994 nsv831833 10 38942641 39116217 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448347 S 95 0 1 "" essv19062 10 38949186 39018686 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA11830 nsv8618 10 38958880 38968899 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19179 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA12740 nsv8619 10 38971109 39018833 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20862 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18502 nsv831834 10 38975626 39012541 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448350,nssv1448349,nssv1448348,nssv1448352 M 95 1 3 "" nsv469653 10 38983842 39172686 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649581 M 265 0 0 Samples from several populations that are part of the HapMap project. "" nsv831835 10 38998787 39116217 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448364,nssv1448361,nssv1448368,nssv1448355,nssv1448363,nssv1448356,nssv1448367,nssv1448366,nssv1448358,nssv1448365,nssv1448354,nssv1448353,nssv1448360,nssv1448359,nssv1448357 M 95 1 14 "" nsv831837 10 38998787 39116217 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448370,nssv1448371,nssv1448369 M 95 3 0 "" nsv507551 10 39006974 39012974 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623114 S 4 1 0 "" NA18994 nsv8620 10 39018645 39077046 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19113,nssv19143,nssv18825 M 31 1 1 Samples from several populations that are part of the HapMap project. "" NA07048,NA18537 essv18206 10 39031996 39194941 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12057 nsv831838 10 39058197 39102696 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448372,nssv1448375,nssv1448374 M 95 3 0 "" nsv8621 10 39089262 39103652 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17020 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA12802 nsv438169 10 41676549 41685682 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470273,nssv470281,nssv470282,nssv470283,nssv470279,nssv470278,nssv470276,nssv470277,nssv470275,nssv470280 M 269 0 10 Samples from several populations that are part of the HapMap project. "" NA10830,NA10856,NA10857,NA10860,NA11829,NA11992,NA12043,NA12236,NA12740,NA12751 dgv25n17 10 41676549 41717935 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437115,nsv437114,nsv437666,nsv437667,nsv437112,nsv437111 M 60 0 6 "" NA10830,NA10856,NA10860,NA12740,NA18854,NA19129 dgv15n6 10 41705738 41707293 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv24247,nsv24356 M 24 "" nsv24990 10 41706104 41706282 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43568 M 24 "" nsv24136 10 41713150 41714250 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv42714 M 24 "" dgv247e1 10 41753546 42249122 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv5855,esv625,esv846 M 271 0 0 "" NA18555 nsv524861 10 41815334 41823188 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700866 S 2026 0 1 "" nsv433409 10 41934595 42161697 CNV Gain Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463290 S 9 1 0 Samples from several populations that are part of the HapMap project. "" NA19240 nsv831839 10 41973206 42199680 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448376 S 95 0 1 "" nsv6476 10 41993659 42063372 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9794,nssv5287,nssv1892,nssv10754,nssv9466 M 9 0 5 "" NA18507,NA18517,NA18555,NA18956,NA19129 essv15292 10 42004899 42199692 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18862 nsv508578 10 42008611 42039093 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622663 S 4 0 1 "" NA18994 dgv7n68 10 42009772 42104807 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH nsv831841,nsv831840 M 95 0 4 "" nsv8622 10 42015157 42032237 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17050 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA12802 nsv8623 10 42059439 42095300 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20892 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18502 nsv509352 10 42061882 42090446 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623632 S 4 1 0 "" NA18994 nsv6487 10 42063805 42097579 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8626 S 9 1 0 "" NA12156 dgv78n27 10 42114131 42267633 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv466874,nsv466875,nsv466876 M 1557 3 0 "" HGDP00546,HGDP00551,HGDP00785 nsv466877 10 42114131 42386420 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542329 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00764 nsv471665 10 42172466 42326672 CNV Gain Sharp et al 2005 15918152 BAC_aCGH,FISH Eichler Segmental Duplication BAC array nssv549514 S 48 1 0 "" NA17058 nsv433411 10 42178160 42273587 CNV Gain Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463292 S 9 1 0 Samples from several populations that are part of the HapMap project. "" NA18555 dgv79n27 10 42180048 42245493 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv466879,nsv466878 M 1557 2 0 "" 1780862358_A,NINDS_211 nsv469725 10 42285136 42498329 CNV Gain Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649746 M 265 2 0 Samples from several populations that are part of the HapMap project. "" dgv248e1 10 42285137 42830197 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv568,esv869,essv4747 M 271 0 0 "" NA18620 nsv6498 10 42296584 42330056 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2845 S 9 1 0 "" NA18555 nsv8625 10 42366820 42372302 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20922 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18502 essv7677 10 42424074 42673001 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18620 esv34929 10 42436200 42649776 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6979727,essv6979728,essv6979729,essv6979730,essv6988230 M 771 0 1 "" NA18620 esv33252 10 42503824 42506478 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv94979 S 51 0 1 "" 22231 dgv249e1 10 42524238 42830197 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv3290,essv18971,essv17770,essv413 M 271 0 0 "" NA10831,NA12005,NA18971,NA18972 nsv517042 10 42526706 42554252 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv674044,nssv653670 M 2026 2 0 "" nsv8626 10 42555543 42583647 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18265,nssv20803,nssv17105,nssv18526,nssv17110,nssv20952,nssv18906,nssv19209,nssv21561,nssv20218,nssv19688,nssv21627,nssv19239,nssv17784,nssv21923,nssv19169 M 31 0 15 Samples from several populations that are part of the HapMap project. "" NA10847,NA10863,NA12155,NA12740,NA12802,NA18502,NA18504,NA18552,NA18860,NA18972,NA18975,NA18980,NA19132,NA19144,NA19173 nsv8627 10 42644935 42674940 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18295,nssv20401,nssv17814,nssv17822 M 31 3 1 Samples from several populations that are part of the HapMap project. "" NA07029,NA18975,NA18980,NA19240 esv32721 10 42648719 42650067 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv92963,essv99834 M 51 0 2 "" 21939,22086 nsv6509 10 42716528 42720082 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3874 S 9 1 0 "" NA12878 nsv522592 10 42894942 42935511 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705982 S 2026 0 1 "" nsv522566 10 42916734 42930677 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705950 S 2026 0 1 "" nsv466881 10 43015055 43119594 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542332 S 1557 0 1 "" 1780862444_A nsv831842 10 43166547 43307507 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448381 S 95 0 1 "" nsv521283 10 43186534 43192004 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697885 S 2026 0 1 "" nsv522992 10 43430347 43434390 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698662 S 2026 0 1 "" nsv24425 10 43495209 43495266 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43003 M 24 "" nsv466884 10 43793042 43835136 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542334 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00790 nsv521308 10 43810420 43810538 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697915 S 2026 0 1 "" nsv24981 10 43995240 43995331 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43559 M 24 "" nsv508579 10 44029776 44119262 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618909 S 4 0 1 "" NA10860 esv2422287 10 44364167 44577690 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161527 S 181 1 0 "" ND01757 nsv831843 10 44404709 44600038 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448382 S 95 1 0 "" nsv525947 10 44483574 44502322 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702154 S 2026 0 1 "" nsv509353 10 44498001 44535555 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623635 S 4 1 0 "" NA18994 dgv21e55 10 44515191 44676600 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv2750895,esv2750893,esv2750894,esv2750896 M 771 4 0 "" BEC_428,BEC_554,BEC_675,BEC_830 dgv80n27 10 44523027 44689150 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv466892,nsv466891,nsv466896,nsv466895,nsv466893,nsv466886,nsv466898,nsv466888,nsv466887,nsv466889,nsv466897,nsv466890 M 1557 12 0 "" 1780854535_A,1780854573_A,1780854592_A,1780862090_A,1780862379_A,1780862392_A,HGDP00520,HGDP01253,HGDP01264,HGDP01362,HGDP01368,NINDS_40 nsv517161 10 44530696 44736262 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv660427,nssv655603,nssv662648,nssv688289,nssv680611,nssv693226,nssv684003,nssv694897,nssv677553,nssv683041,nssv683663,nssv691597,nssv653898,nssv667079,nssv691959,nssv665722,nssv663167 M 2026 16 1 "" nsv831844 10 44548797 44727768 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448383 S 95 1 0 "" esv32821 10 44567720 44679788 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv94668,essv101629,essv94496,essv97206,essv96062,essv96281 M 51 2 4 "" 21791,21909,21932,22075,22127,22371 nsv831845 10 44620274 44780401 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448385 S 95 1 0 "" nsv6521 10 44631187 44663870 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5288 S 9 1 0 "" NA19129 nsv24641 10 44641129 44641129 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43219 M 24 "" nsv831846 10 44642242 44876376 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448386 S 95 0 1 "" nsv466909 10 44728017 44766797 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542347 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01353 nsv818757 10 44740082 44751327 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417725 S 112 0 1 "" NA19003 nsv526734 10 44778491 44812060 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703077 S 2026 0 1 "" nsv831848 10 44810182 44987676 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448388,nssv1448387 M 95 2 0 "" esv2750897 10 44870151 45140142 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6989984,essv6989985,essv6984567,essv6984566 M 771 0 1 "" BEC_720 nsv510216 10 44917005 44923005 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618325,nssv621402,nssv624133 M 4 0 3 "" CHM,NA15510,NA18994 nsv509354 10 45151790 45187734 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619646 S 4 1 0 "" NA10860 nsv466910 10 45198914 45218362 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542348 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00869 nsv6532 10 45332882 45348809 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv852 S 9 1 0 "" NA19240 dgv250e1 10 45341719 45544339 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv20211,essv5083,essv24691,essv17882 M 271 0 0 "" NA11829,NA11832,NA12003,NA18570 dgv251e1 10 45341719 45746970 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv16540,essv24396,essv20280,essv19411 M 271 0 0 "" NA11840,NA12144,NA12707,NA19210 dgv252e1 10 45341719 48101925 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv21258,esv610,esv514,essv24106,essv18760,essv24184,essv21324 M 271 0 0 "" NA07048,NA07056,NA10855,NA12874,NA12878 nsv528750 10 45344626 45396241 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705412 S 2026 0 1 "" dgv253e1 10 45364098 46575501 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv20813,essv21583,essv20850,essv20482,essv6204,essv21600,essv21658,essv24173,essv14686,essv18506,essv23758,essv18012,essv13327,essv9583 M 271 0 0 "" NA10855,NA11829,NA11994,NA12146,NA12155,NA12249,NA12751,NA12761,NA12763,NA12878,NA18500,NA18501,NA18563,NA19145 esv2750898 10 45365767 47063957 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6983536,essv6989807 M 771 0 1 "" BEC_667 dgv254e1 10 45368924 47212082 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv5772,essv18571,essv23167,essv24317,essv18463,essv23725,essv18489,essv23639,essv707,essv18683 M 271 0 0 "" NA07055,NA10831,NA10851,NA11832,NA11882,NA12056,NA12156,NA12813,NA18540,NA18940 nsv442178 10 45392881 45396237 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" essv18092 10 45425616 46063691 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12145 nsv516485 10 45429539 47932297 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv652705,nssv681950,nssv657392,nssv670156,nssv687124,nssv684127,nssv689415,nssv657364,nssv678861,nssv693052,nssv675279,nssv686545,nssv665948,nssv661046,nssv679136,nssv686998,nssv654115,nssv658747,nssv686924,nssv667888,nssv658120,nssv693541,nssv684519,nssv652986,nssv684852,nssv678233,nssv678709,nssv661938,nssv692023,nssv658527,nssv683375,nssv662095,nssv652815,nssv673630,nssv659164,nssv688323,nssv669184,nssv686890,nssv663792,nssv675078,nssv672977,nssv667488,nssv656994,nssv666042,nssv674626,nssv685191,nssv664468,nssv677355,nssv652816,nssv660300,nssv683461,nssv689566,nssv661346,nssv655201,nssv659261,nssv679420,nssv659187,nssv687650,nssv672913,nssv676352,nssv667961,nssv655642,nssv687082,nssv677605,nssv680874,nssv675290,nssv652449,nssv690829,nssv676406,nssv671843,nssv681848,nssv684015,nssv681474,nssv669898,nssv676499,nssv671165,nssv663180,nssv686828,nssv674892,nssv652795,nssv667135,nssv692110,nssv655680,nssv669636,nssv664302,nssv661706,nssv683159,nssv678923,nssv677400,nssv688986,nssv657734,nssv668122,nssv653016,nssv680582,nssv665217,nssv667836,nssv654718,nssv671995,nssv654928,nssv675538,nssv688167,nssv653530,nssv686377,nssv660680,nssv692664,nssv664866,nssv658759,nssv659378,nssv679039,nssv674017,nssv651767,nssv672696,nssv690696,nssv685550,nssv691665,nssv657523,nssv690753,nssv662649,nssv665683,nssv691303,nssv660148,nssv657930,nssv655324,nssv653990,nssv663693,nssv680954,nssv680257,nssv704558,nssv682918,nssv661268,nssv662008,nssv657801,nssv660379,nssv680763,nssv653295,nssv683219,nssv667171,nssv682861,nssv652192,nssv656693,nssv653354,nssv652059,nssv690721,nssv656047,nssv684851,nssv685936,nssv688200,nssv666145,nssv673500,nssv656961,nssv665198,nssv688416,nssv688303,nssv660713,nssv679315,nssv656428,nssv676480,nssv665035,nssv660863,nssv678256,nssv678528,nssv675049,nssv690862,nssv672960,nssv665701,nssv656508,nssv676139,nssv672259,nssv673235,nssv660072,nssv691550,nssv668804,nssv665530,nssv660880,nssv692482,nssv674328,nssv677229,nssv691470,nssv668528,nssv687719,nssv689727,nssv668399,nssv664704,nssv655726,nssv657292,nssv678693,nssv681271,nssv666608,nssv657976,nssv653294,nssv658219,nssv676249,nssv652571,nssv677911,nssv653565,nssv690671,nssv671219,nssv663204,nssv661997,nssv655851,nssv668969,nssv654203,nssv663230,nssv663999,nssv673155,nssv688515,nssv674674,nssv668151,nssv655397,nssv687041,nssv673942,nssv665077,nssv680478 M 2026 169 44 "" dgv2e24 10 45477941 45478191 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH esv2750516,esv2750578 M 51 2 0 "" 21802,22086 nsv8628 10 45489966 45523180 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21657,nssv17936,nssv18325,nssv20982,nssv23452,nssv17212,nssv20833,nssv19217 M 31 0 8 Samples from several populations that are part of the HapMap project. "" NA18502,NA18504,NA18563,NA18942,NA18980,NA19007,NA19132,NA19221 esv33964 10 45525725 45554746 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97472 S 51 0 1 "" 21616 esv2750899 10 45530757 46557002 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6988794,essv6984365,essv6984364 M 771 1 0 "" BEC_695 esv34875 10 45536421 47212100 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6980015,essv6980017,essv6980018,essv6986996,essv6986995,essv6990434,essv6980014,essv6980016 M 771 1 0 "" NA18940 nsv7202 10 45552535 45588729 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9795 S 9 0 0 "" NA18507 esv32653 10 45554746 47944396 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101238,essv93921,essv98298,essv101330,essv95654,essv93050,essv95407,essv92996,essv93648,essv96155,essv96072,essv99642,essv99338,essv97701,essv99379 M 51 12 3 "" 21618,21634,21772,21805,21841,21863,21872,21939,21972,22007,22127,22217,22275,22278,22335 nsv8629 10 45625050 45628105 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21591,nssv17966 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18860,NA19007 nsv8630 10 45628687 45669394 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18355,nssv17242,nssv18556,nssv17996,nssv19247 M 31 0 5 Samples from several populations that are part of the HapMap project. "" NA18552,NA18563,NA18942,NA18980,NA19007 nsv8631 10 45688698 45731131 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18026,nssv19277,nssv21621,nssv21651 M 31 1 2 Samples from several populations that are part of the HapMap project. "" NA18563,NA18860,NA19007 nsv510991 10 45737063 48706495 OTHER Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621624,nssv622404,nssv621621,nssv624342,nssv622407,nssv624341 M 4 0 0 "" NA10860,NA15510,NA18994 nsv8632 10 45743850 45745047 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21681,nssv18056 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18860,NA19007 dgv255e1 10 45896971 46174280 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv22507,essv13018,essv21158,essv18271,essv21963,essv22770 M 271 0 0 "" NA07019,NA10846,NA11882,NA11995,NA12815,NA18859 dgv256e1 10 45896971 46738511 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv20617,essv19974 M 271 0 0 "" NA07056,NA12813 dgv257e1 10 45896971 47972148 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv847,essv23992,essv24837,essv22388,essv10749,essv22562,essv15248,essv10488,essv23145,essv283,essv1599,essv1488,essv8429,essv3027,essv8854,essv2800,essv20242,essv5023,essv2590,essv37,essv12454,essv528,essv7564,essv2449,essv20798,essv22137,essv22059,essv1377,essv11258,essv3161,essv8752,essv4582,essv4839,essv15847,essv12214,essv24053,essv19204,essv8294,essv1238,essv8239,essv23237,essv6122,essv694,essv22465,essv13653,essv9443,essv9187,essv15037,essv10037,essv16847,essv10106,essv18651,essv11026,essv5267,essv15591,essv12317,essv14856,essv18186,essv13705,essv5414,essv3877,essv20643,essv16425,essv2528,essv23570,essv18989,essv21695,essv24814,essv13753,essv24250,essv22982,essv1762,essv11191,essv15768,essv20361,essv6396,essv12609,essv4454,essv5219,essv15495,essv11999,essv14369,essv10656,essv7297,essv5473,essv12808,essv22347,essv20173,essv5583,essv22627,essv6772,essv2676,essv7866,essv14434,essv18845,essv20331,essv4297,essv7001,essv22862,essv353,essv17734,essv16113,essv6371,essv4073,essv23806,essv6279,essv16358,essv1823,essv4981,essv15427,essv20900,essv19251,essv21033,essv13431,essv9334,essv23349,essv13849,essv4717,essv23030,essv24929,essv4196,essv23523,essv19429,essv10368,essv11455,essv24417,essv3469,essv4640,essv12424,essv23911,essv21170,essv11524,essv9149,essv6583,essv14129,essv9063,essv15333,essv17154,essv5715,essv24995,essv10552,essv18148,essv9800,essv2195,essv19687,essv13202,essv6662,essv10849,essv23846,essv19568,essv16804,essv17091,essv3223,essv15706,essv12732,essv21510,essv21380,essv17892,essv3805,essv1420,essv3343,essv23413,essv3725,essv24727,essv4748,essv4393,essv4168,essv2100,essv14774,essv2851,essv16070,essv13558,essv16222,essv18430,essv21466,essv8150,essv11906,essv16967,essv3560,essv7205,essv2291,essv17424,essv11767,essv108,essv7411,essv3112,essv22200,essv9683,essv10343,essv11639 M 271 0 0 "" NA06985,NA06991,NA06993,NA06994,NA07000,NA07022,NA07029,NA07348,NA07357,NA10830,NA10838,NA10839,NA10854,NA10856,NA10857,NA10859,NA10860,NA11829,NA11830,NA11831,NA11832,NA11840,NA11993,NA12003,NA12005,NA12006,NA12043,NA12044,NA12057,NA12144,NA12146,NA12154,NA12234,NA12236,NA12248,NA12264,NA12707,NA12716,NA12717,NA12740,NA12750,NA12751,NA12752,NA12760,NA12761,NA12763,NA12801,NA12812,NA12814,NA12864,NA12865,NA12872,NA12873,NA12875,NA12891,NA12892,NA18501,NA18502,NA18504,NA18505,NA18506,NA18508,NA18515,NA18516,NA18517,NA18522,NA18523,NA18524,NA18526,NA18529,NA18532,NA18540,NA18545,NA18547,NA18552,NA18555,NA18558,NA18562,NA18563,NA18572,NA18573,NA18576,NA18592,NA18593,NA18594,NA18603,NA18608,NA18609,NA18611,NA18612,NA18620,NA18621,NA18622,NA18623,NA18624,NA18632,NA18635,NA18636,NA18637,NA18853,NA18854,NA18855,NA18857,NA18860,NA18861,NA18862,NA18863,NA18871,NA18872,NA18912,NA18913,NA18914,NA18942,NA18943,NA18944,NA18945,NA18947,NA18949,NA18953,NA18960,NA18965,NA18966,NA18967,NA18968,NA18969,NA18971,NA18973,NA18974,NA18975,NA18976,NA18978,NA18980,NA18981,NA18987,NA18990,NA18991,NA18992,NA18994,NA18995,NA18997,NA18998,NA18999,NA19003,NA19007,NA19012,NA19092,NA19094,NA19098,NA19099,NA19100,NA19101,NA19102,NA19103,NA19116,NA19119,NA19120,NA19127,NA19128,NA19129,NA19130,NA19131,NA19132,NA19137,NA19138,NA19139,NA19143,NA19144,NA19153,NA19154,NA19159,NA19160,NA19161,NA19171,NA19172,NA19173,NA19192,NA19193,NA19194,NA19201,NA19203,NA19204,NA19205,NA19206,NA19207,NA19208,NA19211,NA19222,NA19223,NA19238,NA19240 nsv831849 10 45896976 46063691 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448389,nssv1448390 M 95 2 0 "" nsv8633 10 45900211 45962568 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16661,nssv23480,nssv18936 M 31 1 2 Samples from several populations that are part of the HapMap project. "" NA10863,NA12872,NA19221 dgv258e1 10 46002351 47262482 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv16489,essv24131,essv23674,essv3299,essv7749,essv14491,essv7134,essv11878,essv7346,essv774,essv6919,essv4881,essv13069,essv17644,essv24504,essv5789,essv5142,essv8338,essv6969,essv22834,essv6815,essv12657,essv19787,essv3763,essv1114 M 271 0 0 "" NA10835,NA10847,NA10863,NA11881,NA12004,NA12802,NA18500,NA18537,NA18542,NA18561,NA18564,NA18566,NA18570,NA18579,NA18582,NA18605,NA18852,NA18858,NA18956,NA18961,NA18964,NA18972,NA19202,NA19210,NA19221 nsv8634 10 46026904 46029982 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23508,nssv18586 M 31 1 1 Samples from several populations that are part of the HapMap project. "" NA18552,NA19221 nsv831850 10 46044011 46255325 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448397,nssv1448398,nssv1448396,nssv1448399,nssv1448394,nssv1448391,nssv1448393,nssv1448392 M 95 7 1 "" nsv8636 10 46097600 48942528 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21222,nssv17209,nssv16931,nssv19158,nssv18266,nssv19627,nssv17239,nssv17332,nssv18618,nssv17320,nssv19559,nssv18738,nssv22011,nssv17200,nssv17021,nssv18174,nssv19958,nssv21891,nssv22131,nssv18616,nssv19203,nssv18506,nssv20461,nssv23761,nssv21983,nssv18204,nssv17111,nssv23923,nssv21211,nssv18706,nssv18676,nssv18805,nssv16841,nssv20278,nssv16691,nssv18054,nssv21162,nssv20911,nssv20248,nssv17170,nssv18386,nssv18560,nssv18740,nssv22161,nssv17392,nssv17572,nssv18394,nssv19928,nssv18410,nssv18620,nssv19367,nssv20338,nssv21741,nssv20368,nssv23536,nssv23564,nssv16721,nssv19008,nssv21102,nssv22311,nssv22251,nssv18415,nssv18505,nssv19038,nssv22191,nssv18650,nssv19499,nssv23842,nssv17329,nssv19173,nssv17345,nssv19307,nssv18907,nssv18745,nssv18566,nssv23592,nssv18985,nssv17255,nssv18918,nssv17299,nssv20108,nssv21801,nssv18596,nssv19188,nssv17435,nssv22043,nssv21192,nssv23869,nssv18858,nssv19507,nssv23620,nssv20611,nssv17482,nssv21687,nssv21644,nssv21031,nssv18860,nssv17285,nssv20881,nssv17119,nssv18978,nssv19218,nssv19778,nssv22341,nssv19387,nssv20971,nssv18685,nssv17315,nssv17904,nssv17051,nssv17140,nssv19174,nssv17149,nssv18530,nssv16961,nssv19988,nssv18925,nssv19128,nssv19299,nssv17201,nssv17290,nssv19349,nssv21042,nssv17171,nssv21861,nssv18470,nssv19327,nssv18680,nssv18855,nssv19808,nssv16999,nssv19269,nssv18798,nssv20521,nssv18708,nssv17141,nssv19337,nssv18648,nssv19357,nssv19267,nssv19015,nssv19248,nssv18206,nssv19359,nssv18565,nssv17135,nssv17912,nssv20731,nssv22013,nssv21301,nssv18955,nssv20018,nssv19147,nssv18626,nssv17195,nssv18828,nssv21061,nssv18536,nssv20821,nssv16991,nssv21674,nssv17350,nssv22193,nssv18835,nssv21271,nssv16811,nssv18945,nssv19597,nssv18236,nssv17375,nssv18997,nssv18678,nssv19537,nssv20851,nssv17362,nssv18966,nssv18655,nssv20581,nssv18874,nssv18796,nssv19529,nssv19259,nssv19319,nssv17964,nssv18830,nssv21151,nssv17029,nssv19297,nssv17302,nssv16871,nssv17602,nssv21951,nssv20641,nssv19237,nssv19657,nssv16939,nssv18888,nssv19449,nssv19567,nssv17512,nssv20671,nssv18877,nssv18895,nssv18885,nssv17359,nssv21241,nssv19035,nssv23788,nssv23676,nssv19717,nssv16781,nssv19777,nssv23734,nssv21121,nssv18634,nssv18264,nssv19687,nssv21921,nssv18915,nssv21831,nssv22221,nssv21361,nssv19024,nssv20551,nssv21747,nssv18994,nssv21711,nssv20491,nssv18604,nssv21981,nssv19229,nssv18385,nssv23648,nssv18326,nssv19125,nssv19278,nssv19838,nssv18715,nssv17231,nssv22401,nssv17882,nssv18967,nssv21012,nssv20701,nssv19379,nssv20398,nssv18904,nssv18176,nssv18948,nssv16969,nssv20048,nssv18710,nssv21132,nssv18736,nssv21331,nssv18784,nssv19114,nssv18364,nssv22281,nssv17852,nssv18595,nssv23950,nssv16909,nssv18304,nssv17844,nssv18500,nssv22163,nssv18544,nssv19289,nssv19898,nssv17260,nssv18844,nssv18664,nssv18975,nssv17452,nssv20308,nssv18574,nssv19718,nssv18234,nssv17165,nssv22041,nssv19144,nssv19117,nssv18964,nssv21181,nssv17225,nssv19065,nssv19068,nssv22371,nssv19054,nssv18454,nssv18356,nssv19027,nssv18146,nssv19409,nssv17272,nssv21001,nssv20791,nssv18694,nssv17465,nssv20941,nssv18724,nssv21953,nssv17542,nssv17230,nssv18535,nssv18476,nssv22133,nssv16901,nssv18865,nssv19329,nssv18296,nssv18646,nssv19477,nssv19199,nssv19177,nssv17495,nssv22073,nssv17934,nssv18937,nssv19389,nssv19447,nssv17874,nssv18814,nssv23815,nssv20863,nssv18484,nssv18625,nssv18934,nssv17059,nssv18475,nssv19207,nssv18590,nssv17972,nssv23896,nssv17942,nssv18144,nssv19204,nssv18334,nssv17261,nssv19868,nssv18847,nssv17994,nssv19057,nssv18514,nssv17269,nssv21717,nssv19469,nssv18274,nssv18416,nssv18800,nssv19155,nssv18024,nssv19005,nssv22071,nssv17179 M 31 6 29 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10847,NA10863,NA11830,NA12155,NA12740,NA12802,NA12872,NA18502,NA18504,NA18517,NA18537,NA18552,NA18563,NA18564,NA18572,NA18853,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19144,NA19173,NA19221,NA19240 nsv7203 10 46112244 51142474 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv892,nssv6395,nssv9796,nssv9797,nssv10756,nssv10755,nssv5289,nssv872,nssv6394,nssv3875,nssv862,nssv3876,nssv5290,nssv11239,nssv1894 M 9 0 0 "" NA12156,NA12878,NA15510,NA18507,NA18555,NA18956,NA19129,NA19240 dgv8n68 10 46228686 46416466 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH nsv831852,nsv831851 M 95 17 0 "" essv21763 10 46232533 46428959 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12239 dgv259e1 10 46232533 46645403 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv227,essv1201 M 271 0 0 "" NA18948,NA18951 dgv260e1 10 46232533 47262482 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv10912,essv10250,essv20112,essv7689,essv14630,essv9911,essv23201,essv15981,essv23484,essv6033,essv3969,essv12023,essv8952,essv1030,essv5106,essv17298,essv7890,essv12969,essv14378,essv24573,essv21111,essv18330,essv15008,essv905,essv2324,essv18421,essv470,essv17568,essv18312,essv22761,essv17277,essv11807,essv17845 M 271 0 0 "" NA07019,NA07034,NA07345,NA10831,NA10846,NA11992,NA11994,NA12156,NA12249,NA12762,NA12815,NA18503,NA18507,NA18521,NA18571,NA18577,NA18633,NA18856,NA18859,NA18870,NA18940,NA18952,NA18970,NA19000,NA19005,NA19093,NA19140,NA19141,NA19142,NA19145,NA19152,NA19200,NA19209 dgv22e55 10 46363383 46557002 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv2750907,esv2750905,esv34440,esv2750902,esv2750904,esv2750900,esv34848,esv2750901,esv2750903,esv2750906,esv2750939 M 771 11 0 "" BEC_355,BEC_361,BEC_531,BEC_579,BEC_580,BEC_613,BEC_673,BEC_722,BEC_77,NA11882,NA12753 dgv261e1 10 46363383 46575501 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv12445,essv22809,essv20739,essv9860,essv19128 M 271 0 0 "" NA07357,NA12044,NA12753,NA19144,NA19152 dgv262e1 10 46363383 47062478 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv21925,essv22736,essv19042 M 271 0 0 "" NA07034,NA12057,NA12239 dgv23e55 10 46363383 47212100 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv34785,esv34814,esv2750912,esv34288,esv34409,esv34478,esv34970,esv2750913 M 771 0 8 "" NA11840,NA12878,NA18503,NA18861,NA18863,NA19138,NA19139,NA19204 dgv24e55 10 46363383 47212100 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv2750908,esv2750936,esv2750952,esv2750918,esv34497,esv2750955,esv2750920,esv2750954,esv2750917,esv34247,esv2750951,esv2750950,esv2750947,esv2750945,esv34262,esv34281,esv34712,esv34799,esv35047,esv35074,esv35080,esv35088,esv35122,esv2750909,esv2750910,esv2750911,esv2750914,esv2750915,esv2750916,esv2750919,esv2750921,esv2750922,esv2750923,esv2750937,esv2750938,esv2750940,esv2750941,esv2750942,esv2750946,esv2750948,esv2750949,esv2750953,esv2750956 M 771 43 0 "" BEC_103,BEC_106,BEC_350,BEC_358,BEC_363,BEC_373,BEC_40,BEC_44,BEC_484,BEC_522,BEC_53,BEC_620,BEC_631,BEC_646,BEC_665,BEC_726,BEC_73,BEC_735,NA07048,NA07055,NA07056,NA10851,NA18550,NA18948,NA18951,NA19141,NA19142,SPC_133,SPC_155,SPC_159,SPC_162,SPC_163,SPC_167,SPC_169,SPC_171,SPC_179,SPC_187,SPC_193,SPC_29,SPC_43,SPC_56,SPC_83,SPC_85 dgv25e55 10 46363383 47485249 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv2750924,esv34264,esv34745,esv34915,esv2750925 M 771 5 0 "" BEC_132,BEC_411,NA12056,NA12813,NA18959 dgv263e1 10 46363383 47485249 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv21095,essv25176,essv3320,essv7916,essv9538,essv11318 M 271 0 0 "" NA10854,NA11840,NA18861,NA18863,NA18948,NA19239 esv35133 10 46363383 47485249 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6977975,essv6988988,essv6987300,essv6987299,essv6977976 M 771 0 1 "" NA10854 dgv26e55 10 46363383 47992263 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv2750932,esv2750929,esv2750935,esv2750934,esv2750933,esv2750926,esv2750927,esv2750928,esv2750930,esv2750931,esv2750943,esv2750944,esv2750957 M 771 13 0 "" BEC_30,BEC_389,BEC_460,BEC_513,BEC_584,BEC_611,BEC_621,BEC_629,BEC_634,BEC_647,BEC_688,SPC_14,SPC_142 nsv438171 10 46363384 46378622 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470284,nssv470286 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA19200,NA19202 nsv482144 10 46378534 46390607 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558505 S 1 1 0 "" KB1 nsv821667 10 46397301 47102745 CNV Gain Sebat_et_al_2004 15273396 ROMA Custom Nimblegen photoprint 85000 probe ROMA oligo array nssv1421241 S 31 1 0 "" nsv437670 10 46400233 46419001 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467551 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19094 nsv818758 10 46410734 47173619 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416088 S 112 1 0 "" NA12813 nsv438172 10 46412363 46414186 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470288,nssv470287 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA19093,NA19094 nsv482145 10 46413552 46420573 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558506 S 1 1 0 "" KB1 essv13288 10 46422763 46552851 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19202 nsv52 10 46477759 46483278 OTHER Inversion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv52 S 1 0 0 "" NA15510 dgv264e1 10 46487312 47262482 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv6546,essv5708,essv11059,essv22425,essv8982,essv8719,essv11478,essv2410,essv2106,essv15198 M 271 0 0 "" NA10861,NA18504,NA18550,NA18624,NA18856,NA18951,NA18959,NA19138,NA19139,NA19200 nsv831853 10 46487806 46642258 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448425,nssv1448430,nssv1448424,nssv1448423,nssv1448422,nssv1448421,nssv1448420,nssv1448426,nssv1448427,nssv1448428,nssv1448431 M 95 11 0 "" dgv265e1 10 46494897 46529485 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv21626,essv15191 M 271 0 0 "" NA07348,NA18504 essv10708 10 46499590 46507480 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18508 dgv266e1 10 46499590 46557002 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv20505,essv25076 M 271 0 0 "" NA12874,NA12892 essv24439 10 46507377 46575501 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12865 nsv24572 10 46508382 46508709 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43150 M 24 "" essv18515 10 46529485 46575501 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12763 nsv831854 10 46562221 46744982 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448435,nssv1448442,nssv1448436,nssv1448438,nssv1448439,nssv1448437,nssv1448441,nssv1448443,nssv1448433,nssv1448432,nssv1448434 M 95 11 0 "" dgv1e196 10 46875173 47036421 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array esv2422191,esv2422230,esv2422481,esv2422490,esv2422281,esv2422477,esv2422421,esv2422417,esv2422189,esv2422424,esv2422508,esv2422252,esv2422506,esv2422251,esv2422270,esv2422185,esv2422344,esv2422328,esv2422456,esv2422495,esv2422473,esv2422514,esv2422197,esv2422402,esv2422243,esv2422435 M 181 26 0 "" ND00674,ND00714,ND00723,ND01217,ND01424,ND01525,ND01588,ND01660,ND01676,ND01679,ND02296,ND02652,ND03357,ND03463,ND03660,ND03661,ND03662,ND03715,ND03834,ND03975,ND04214,ND04771,ND05124,ND05368,ND05523,ND05536 essv16686 10 46999176 47159671 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19142 dgv267e1 10 46999176 47262482 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv19623,essv18084,essv17627,essv22482,essv22001,essv21798 M 271 0 0 "" NA11882,NA11995,NA12145,NA12155,NA12239,NA12753 nsv831855 10 46999887 47073358 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448446,nssv1448445,nssv1448444 M 95 3 0 "" nsv831856 10 47005430 47105765 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448452,nssv1448447,nssv1448450,nssv1448449,nssv1448448 M 95 5 0 "" nsv831857 10 47005430 47180000 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448456,nssv1448457,nssv1448459,nssv1448458,nssv1448454,nssv1448455,nssv1448453 M 95 7 0 "" nsv442574 10 47012100 47165567 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv81n27 10 47013328 47102486 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv466911,nsv466912,nsv466913 M 1557 0 3 "" HGDP00029,HGDP00907,HGDP00925 dgv82n27 10 47013328 47122505 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv466914,nsv466920,nsv466932,nsv466922,nsv466925,nsv466924,nsv466915,nsv466917 M 1557 8 0 "" 1780862077_A,1780862109_A,HGDP00472,HGDP00473,HGDP00479,HGDP00910,HGDP00931,HGDP01187 nsv818759 10 47013328 47122505 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416956,nssv1416957 M 112 0 2 "" NA19138,NA19139 dgv83n27 10 47013328 47137170 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv466919,nsv466928,nsv466935,nsv466918,nsv466930,nsv466923,nsv466929,nsv466936,nsv466926,nsv466931,nsv466933,nsv466937,nsv466934,nsv466921 M 1557 0 14 "" HGDP00621,HGDP00651,HGDP00727,HGDP00815,HGDP00822,HGDP00913,HGDP00926,HGDP00928,HGDP01029,HGDP01098,HGDP01167,HGDP01202,HGDP01286,HGDP01405 dgv84n27 10 47013328 47173619 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv467039,nsv467007,nsv467022,nsv467036 M 1557 0 4 "" 1780854556_A,1780862207_A,HGDP00759,HGDP01034 dgv85n27 10 47013328 47173619 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv467018,nsv466945,nsv467004,nsv466998,nsv466978,nsv467008,nsv467021,nsv466957,nsv466987,nsv466951,nsv467029,nsv467028,nsv467046,nsv466999,nsv467002,nsv466993,nsv466970,nsv466975,nsv467056,nsv467053,nsv466986,nsv466990,nsv467041,nsv466992,nsv466971,nsv466939,nsv466943,nsv466956,nsv467001,nsv466976,nsv467047,nsv466941,nsv467034,nsv466997,nsv467025,nsv466988,nsv466980,nsv466948,nsv467031,nsv466953,nsv466966,nsv466963,nsv467013,nsv466991,nsv467055,nsv466969,nsv467037,nsv467035,nsv467044,nsv466982,nsv467040,nsv467011,nsv466959,nsv466981,nsv466974,nsv467052,nsv466955,nsv467042,nsv467019,nsv466940,nsv467043,nsv467030,nsv467015,nsv466954,nsv467057,nsv467051,nsv467014,nsv467033,nsv466944,nsv467026,nsv466968,nsv466977,nsv467048,nsv467006,nsv466958,nsv466967,nsv466952,nsv466996,nsv466942,nsv467010,nsv467020,nsv466979,nsv467017,nsv466960,nsv466985,nsv466962,nsv467023,nsv466947,nsv467003,nsv467054,nsv466995,nsv467024,nsv467000,nsv467045,nsv467012,nsv466946,nsv467050,nsv466964,nsv466984,nsv466965,nsv466989,nsv467009,nsv467032,nsv466973 M 1557 104 0 "" 1780854039_A,1780854216_A,1780854296_A,1780854382_A,1780854393_A,1780854441_A,1780854463_A,1780854464_A,1780854477_A,1780854517_A,1780854537_A,1780854538_A,1780862160_A,1780862252_A,1780862274_A,1780862304_A,1780862307_A,1780862360_A,1780862410_A,1780862416_A,1780862433_A,1780862480_A,1780862599_A,1782681076_A,1782681086_A,1782681093_A,1782681117_A,1782681296_A,1782681313_A,1787431196_A,1787431198_A,1798860084_A,1798860114_A,1798860191_A,1798860565_A,1798860569_A,1798860570_A,1798860592_A,HGDP00007,HGDP00021,HGDP00025,HGDP00037,HGDP00039,HGDP00108,HGDP00127,HGDP00134,HGDP00136,HGDP00140,HGDP00143,HGDP00154,HGDP00157,HGDP00189,HGDP00208,HGDP00226,HGDP00251,HGDP00254,HGDP00338,HGDP00364,HGDP00423,HGDP00428,HGDP00445,HGDP00462,HGDP00476,HGDP00526,HGDP00577,HGDP00600,HGDP00607,HGDP00612,HGDP00625,HGDP00626,HGDP00640,HGDP00644,HGDP00646,HGDP00649,HGDP00650,HGDP00654,HGDP00677,HGDP00684,HGDP00693,HGDP00731,HGDP00739,HGDP00785,HGDP00787,HGDP00790,HGDP00882,HGDP00883,HGDP00884,HGDP00886,HGDP00888,HGDP00895,HGDP00896,HGDP00901,HGDP00945,HGDP01155,HGDP01156,HGDP01177,HGDP01248,HGDP01253,HGDP01296,HGDP01332,HGDP01352,HGDP01359,HGDP01379,NINDS_243 nsv818760 10 47013328 47173619 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416262,nssv1415950,nssv1416859,nssv1415961,nssv1415939,nssv1416260,nssv1417414,nssv1417180 M 112 8 0 "" NA10851,NA12056,NA18550,NA18951,NA19140,NA19141,NA19142,NA19239 nsv467059 10 47013328 48278485 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542493 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00986 nsv469676 10 47014282 47166584 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649606 M 265 7 4 Samples from several populations that are part of the HapMap project. "" nsv471667 10 47014283 47166584 CNV Gain Sharp et al 2005 15918152 BAC_aCGH,FISH Eichler Segmental Duplication BAC array nssv549951,nssv549952 M 48 2 0 "" NA10473,NA10493 dgv27e55 10 47030100 47154881 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv35091,esv2750960 M 771 2 0 "" BEC_581,NA18624 dgv28e55 10 47030100 47212100 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv34315,esv2750958 M 771 2 0 "" BEC_568,NA19140 esv34269 10 47030100 47485249 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6980633,essv6980632,essv6980631 M 771 1 0 "" NA19239 esv2750959 10 47030119 47129146 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6981124,essv6989223,essv6987915 M 771 0 1 "" BEC_355 dgv268e1 10 47030119 47142170 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv9948,essv8541 M 271 0 0 "" NA18503,NA19204 dgv86n27 10 47058066 47122505 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv467179,nsv467069,nsv467068,nsv467062,nsv467063,nsv467064 M 1557 0 6 "" 1780854449_A,HGDP00547,HGDP00682,HGDP00924,NINDS_233,NINDS_51 dgv87n27 10 47065283 47120496 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv467067,nsv467065,nsv467066 M 1557 3 0 "" NINDS_102,NINDS_197,NINDS_44 dgv88n27 10 47065283 47173619 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv467073,nsv467099,nsv467095,nsv467081,nsv467080,nsv467092,nsv467103,nsv467100,nsv467182,nsv467074,nsv467098,nsv467184,nsv467093,nsv467090,nsv467091,nsv467104,nsv467097,nsv467180,nsv467186,nsv467101,nsv467102,nsv467079,nsv467096 M 1557 23 0 "" 1780862564_A,HGDP01018,HGDP01019,HGDP01260,NINDS_120,NINDS_124,NINDS_152,NINDS_21,NINDS_221,NINDS_230,NINDS_231,NINDS_237,NINDS_249,NINDS_272,NINDS_38,NINDS_55,NINDS_56,NINDS_62,NINDS_73,NINDS_83,NINDS_84,NINDS_94,NINDS_99 dgv89n27 10 47067933 47138713 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv467185,nsv467181 M 1557 0 2 "" HGDP00574,HGDP01195 nsv831859 10 47081131 47231326 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448466,nssv1448463,nssv1448465,nssv1448461,nssv1448464,nssv1448460 M 95 1 5 "" nsv437671 10 47098898 47110126 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467552 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18863 nsv6543 10 47119687 47151348 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8664,nssv901 M 9 2 0 "" NA12156,NA19240 dgv90n27 10 47129146 47173619 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv467187,nsv467188 M 1557 2 0 "" HGDP01384,HGDP01401 nsv24140 10 47136753 47136860 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv42718 M 24 "" nsv438173 10 47148027 47167032 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470290,nssv470289 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA10854,NA11840 nsv437116 10 47164728 47241190 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv466997 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA10854 nsv831860 10 47795721 48000264 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448469,nssv1448467,nssv1448468 M 95 3 0 "" dgv269e1 10 47796101 47972148 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv13049,essv19906 M 271 0 0 "" NA12813,NA18852 nsv831861 10 47887827 48053271 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448470 S 95 0 1 "" essv16333 10 47897414 48101925 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19193 nsv528799 10 48027605 48036280 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705473 S 2026 0 1 "" nsv442179 10 48212212 48214020 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv270e1 10 48213402 49121538 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv21298,esv244,esv152,essv12997,essv21120,essv18303,essv18732,essv20571 M 271 0 0 "" NA07056,NA10846,NA10855,NA12815,NA12874,NA18859 nsv467189 10 48259886 48283346 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542539 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00778 esv33233 10 48279392 48280256 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98136 S 51 0 1 "" 21772 nsv831862 10 48372951 48535657 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448477,nssv1448480,nssv1448476,nssv1448479,nssv1448478,nssv1448472,nssv1448475,nssv1448474,nssv1448471 M 95 9 0 "" nsv433259 10 48412669 48517575 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463140 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA12878 nsv6554 10 48495467 48549091 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10757 S 9 0 1 "" NA18956 dgv271e1 10 48504198 48715542 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv24143,essv3225,essv4688,essv1864,essv13640,essv3071,essv2777,essv12386,essv2574,essv24881,essv21020,essv782,essv10984,essv1287,essv21563,essv2493,essv1749,essv13183,essv9216,essv23231,essv4821,essv10069,essv24082,essv6714,essv10812,essv7014,essv4573,essv4407,essv12828,essv4441,essv21738,essv8837,essv12498,essv4884,essv5090,essv5220,essv12292,essv21189,essv16839,essv17570,essv1132,essv8205,essv4167,essv16116,essv18866,essv18664,essv10899,essv19789,essv15572,essv17818,essv1503,essv4624,essv4051,essv17071,essv16530,essv6278,essv19263,essv20924,essv18142,essv13080,essv24493,essv9348,essv13905,essv10672,essv20129,essv11509,essv16357,essv19910,essv7158,essv22635,essv23880,essv11204,essv15329,essv5055,essv10853,essv17715,essv15634,essv22434,essv17204,essv9670,essv12736,essv24777,essv1615,essv4778,essv14451,essv6963,essv22827,essv9412,essv6330,essv13700,essv2889,essv15380,essv16071,essv14747,essv2205,essv22349,essv11960,essv23587,essv1459,essv17438,essv22066,essv2290,essv2625,essv3143 M 271 0 0 "" NA06985,NA06991,NA07000,NA07029,NA07345,NA10831,NA10835,NA10838,NA10847,NA10859,NA10860,NA11830,NA11993,NA12004,NA12006,NA12043,NA12154,NA12234,NA12248,NA12751,NA12752,NA12761,NA12762,NA12801,NA12802,NA12813,NA12814,NA12872,NA12873,NA18501,NA18502,NA18508,NA18523,NA18524,NA18540,NA18547,NA18552,NA18555,NA18561,NA18573,NA18576,NA18577,NA18582,NA18594,NA18608,NA18609,NA18611,NA18612,NA18620,NA18622,NA18635,NA18636,NA18852,NA18853,NA18854,NA18855,NA18862,NA18871,NA18912,NA18913,NA18914,NA18942,NA18944,NA18953,NA18956,NA18960,NA18964,NA18966,NA18967,NA18969,NA18974,NA18976,NA18980,NA18981,NA18987,NA18990,NA18995,NA18997,NA19003,NA19099,NA19100,NA19102,NA19116,NA19119,NA19120,NA19127,NA19128,NA19137,NA19138,NA19143,NA19159,NA19171,NA19172,NA19173,NA19193,NA19201,NA19203,NA19204,NA19205,NA19207,NA19208,NA19209,NA19210,NA19238 dgv272e1 10 48504198 49121538 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv23393,essv11106,essv18241,essv15081,essv20241,essv22548,essv90,essv21433,essv24269,essv571,essv22103,essv10410,essv15211,essv20675,essv5405,essv7551,essv11711,essv12191,essv22218,essv22993,essv20326,essv20805,essv9054,essv169,essv22371,essv5591,essv19664,essv20429,essv15542,essv13782,essv20205,essv14322,essv15801,essv16443,essv6136,essv23379,essv8456,essv22909,essv24413,essv23090,essv19451,essv4269,essv24963,essv9140,essv14119,essv12540,essv9796,essv19541,essv19178,essv16301,essv17944,essv24684,essv21325,essv6627,essv15720,essv10142,essv2027,essv18964,essv8174,essv23546,essv10339,essv334,essv10525 M 271 0 0 "" NA06993,NA07348,NA07357,NA10830,NA10839,NA10854,NA10856,NA10857,NA11829,NA11832,NA11840,NA12003,NA12005,NA12044,NA12057,NA12144,NA12146,NA12236,NA12264,NA12707,NA12717,NA12750,NA12760,NA12812,NA12864,NA12865,NA12875,NA12878,NA12892,NA18505,NA18506,NA18516,NA18529,NA18532,NA18545,NA18563,NA18603,NA18621,NA18860,NA18861,NA18863,NA18949,NA18968,NA18971,NA18991,NA18998,NA19094,NA19098,NA19101,NA19129,NA19130,NA19131,NA19132,NA19139,NA19153,NA19154,NA19161,NA19194,NA19206,NA19211,NA19222,NA19223,NA19240 nsv469543 10 48620736 48707825 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649653 M 265 1 1 Samples from several populations that are part of the HapMap project. "" essv22497 10 48865542 49121538 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA11882 nsv469669 10 48865543 49010893 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649599 M 265 2 3 Samples from several populations that are part of the HapMap project. "" esv33214 10 48866957 48932382 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv94503 S 51 0 1 "" 21932 nsv437672 10 48881292 48946348 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467553 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19240 nsv831863 10 48889307 49019439 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448488,nssv1448481,nssv1448482,nssv1448487,nssv1448483,nssv1448485,nssv1448486 M 95 7 0 "" nsv831864 10 48967821 49120305 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448489,nssv1448491,nssv1448494,nssv1448493,nssv1448492,nssv1448490 M 95 6 0 "" nsv8637 10 48983651 48987978 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21252,nssv23977,nssv18826 M 31 1 2 Samples from several populations that are part of the HapMap project. "" NA18502,NA18552,NA19221 nsv8638 10 49018055 49024583 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24034,nssv21282 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA18502,NA19221 nsv6565 10 49030812 49064984 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8676 S 9 1 0 "" NA12156 nsv8639 10 49055051 49059579 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21704,nssv18856 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18517,NA18552 nsv467190 10 49072090 49246884 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542540 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01330 nsv6576 10 49145512 49174261 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10758 S 9 1 0 "" NA18956 nsv6587 10 49196335 49241810 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6397 S 9 0 1 "" NA12156 nsv518744 10 49306513 49313232 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696193 S 2026 0 1 "" nsv519701 10 49306513 49321355 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697000 S 2026 0 1 "" nsv516006 10 49377948 49393306 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv678962,nssv688239,nssv658140,nssv665684,nssv669185,nssv669087 M 2026 0 6 "" nsv6598 10 49430128 49435536 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9798 S 9 1 0 "" NA18507 nsv6609 10 49440425 49448216 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8685 S 9 0 1 "" NA12156 nsv523003 10 49587067 49590614 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698675 S 2026 0 1 "" nsv831865 10 49664260 49834245 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448496 S 95 1 0 "" nsv516774 10 49684334 49684822 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv653456,nssv653150 M 2026 0 2 "" esv32989 10 49726457 49729424 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv96923,essv95613,essv95296,essv99322 M 51 0 4 "" 21817,21841,21872,22275 nsv517287 10 49792187 49804272 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv692163,nssv696227,nssv677120,nssv682901,nssv666146,nssv681137,nssv663231,nssv675486,nssv654204 M 2026 0 9 "" nsv831866 10 49835186 50005282 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448497,nssv1448498 M 95 1 1 "" nsv6620 10 49867350 49894641 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv910 S 9 0 1 "" NA19240 nsv522731 10 49963462 49964676 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698364 S 2026 0 1 "" nsv24458 10 50130153 50130212 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43036 M 24 "" nsv526843 10 50240550 50255183 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703201 S 2026 0 1 "" nsv831867 10 50277863 50458757 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448499 S 95 1 0 "" nsv6632 10 50364063 50396529 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3877 S 9 1 0 "" NA12878 nsv510217 10 50525050 50531050 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621409 S 4 0 1 "" NA15510 essv75 10 50641980 50807416 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18991 dgv273e1 10 50641980 51595172 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv9,esv118,essv16510 M 271 0 0 "" NA19210 nsv442180 10 50674142 50680904 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" esv33570 10 50678421 50678523 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101333 S 51 0 1 "" 21805 esv32746 10 50678421 50681816 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97545 S 51 0 1 "" 21616 nsv508580 10 50712535 50961630 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618918,nssv620071,nssv622672 M 4 0 3 "" NA10860,NA15510,NA18994 nsv519934 10 50719554 50764666 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv660287,nssv674490,nssv677257,nssv659553 M 2026 0 4 "" nsv8640 10 50721723 50762852 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22461,nssv18656,nssv19397 M 31 1 2 Samples from several populations that are part of the HapMap project. "" NA18563,NA18860,NA19007 esv32940 10 50721724 51158065 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93621 S 51 0 1 "" 21972 nsv8641 10 50763834 50768136 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22491,nssv18686 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA18860,NA19007 nsv442181 10 50783051 50800899 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv274e1 10 50857416 51278775 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv21243,essv24389,essv16432,essv20257,essv2573,essv19399,essv12274,essv20887,essv20174,essv18718,essv17981,essv11211,essv23403,essv328 M 271 0 0 "" NA10854,NA10855,NA11832,NA11840,NA12003,NA12144,NA12707,NA12801,NA12874,NA18971,NA18990,NA19101,NA19139,NA19204 nsv8642 10 50878681 50881736 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18716 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19007 nsv8643 10 50882318 50923018 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18746,nssv17632,nssv21807,nssv19457,nssv19045,nssv24061 M 31 0 6 Samples from several populations that are part of the HapMap project. "" NA18563,NA18942,NA18980,NA19007,NA19132,NA19221 nsv8644 10 50937807 50984584 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18806,nssv22521,nssv19487 M 31 1 2 Samples from several populations that are part of the HapMap project. "" NA18563,NA18860,NA19007 nsv8645 10 50990376 50990769 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22551 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18860 nsv8647 10 50997313 50998510 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22581 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18860 nsv8648 10 51017719 51020763 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22611,nssv18836 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18860,NA19007 nsv508583 10 51055013 51384011 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622674,nssv618921 M 4 0 2 "" NA10860,NA18994 nsv8649 10 51064677 51177185 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24088,nssv18324,nssv17525,nssv18294,nssv17291,nssv18890,nssv19075,nssv19185,nssv21312,nssv20458,nssv21734,nssv17662,nssv21391,nssv20893,nssv22223,nssv18866,nssv19807,nssv18996,nssv18002,nssv19308,nssv19215,nssv22641,nssv19517,nssv19479,nssv21837,nssv19234 M 31 0 24 Samples from several populations that are part of the HapMap project. "" NA07029,NA10839,NA10847,NA10863,NA11830,NA12740,NA12872,NA18502,NA18504,NA18517,NA18537,NA18563,NA18564,NA18853,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19144,NA19221,NA19240 dgv275e1 10 51118852 51278775 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv5550,essv18168,essv10399,essv17792,essv14130,essv9784,essv19508 M 271 0 0 "" NA10831,NA12057,NA12864,NA18529,NA18861,NA18863,NA19222 nsv510992 10 51123172 51384011 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621629 S 4 0 0 "" NA15510 nsv467192 10 51180767 51264468 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542541 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00986 nsv8650 10 51185282 51188311 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20488,nssv21867,nssv24115 M 31 0 3 Samples from several populations that are part of the HapMap project. "" NA19132,NA19144,NA19221 nsv521269 10 51185540 51264468 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697878 S 2026 1 0 "" nsv6643 10 51190616 51225615 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3878 S 9 1 0 "" NA12878 nsv518071 10 51233999 51827941 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695485 S 2026 1 0 "" nsv8651 10 51305028 51306694 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21481 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19240 nsv8652 10 51313986 51317032 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22671 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18860 nsv8653 10 51336237 51337434 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22700,nssv18896 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18860,NA19007 nsv8654 10 51350153 51397188 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19547,nssv22729,nssv18926 M 31 1 2 Samples from several populations that are part of the HapMap project. "" NA18563,NA18860,NA19007 essv19403 10 51392922 51595172 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA11840 nsv8655 10 51402225 51442273 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24141,nssv18956,nssv19577,nssv17692,nssv19135 M 31 0 5 Samples from several populations that are part of the HapMap project. "" NA18563,NA18942,NA18980,NA19007,NA19221 nsv831868 10 51442401 51622394 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448500 S 95 0 1 "" nsv523210 10 51455604 51492912 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698930 S 2026 0 1 "" nsv471356 10 51497690 51563274 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548062,nssv548061,nssv548060 M 3 "" nsv8656 10 51576024 51587777 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22817,nssv22788,nssv24167,nssv18986,nssv21342,nssv21511 M 31 5 0 Samples from several populations that are part of the HapMap project. "" NA18502,NA18860,NA19007,NA19221,NA19240 esv32634 10 51580154 51581065 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97237 S 51 1 0 "" 22075 nsv521271 10 51582787 51679654 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697879 S 2026 1 0 "" nsv8659 10 51597921 51608279 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18920 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18853 nsv6654 10 51691896 51721620 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10759 S 9 1 0 "" NA18956 nsv522993 10 51715638 51716193 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698663 S 2026 0 1 "" nsv521273 10 51721651 51867853 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697880 S 2026 1 0 "" nsv467193 10 51935271 51959670 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542542 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00262 nsv469522 10 51946570 52117595 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649565 M 265 0 10 Samples from several populations that are part of the HapMap project. "" nsv8660 10 51998265 52016284 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18886 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18552 nsv8661 10 52026915 52030395 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22253 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18972 nsv442182 10 52061462 52063834 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv8662 10 52086668 52131085 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18916,nssv24193 M 31 1 1 Samples from several populations that are part of the HapMap project. "" NA18552,NA19221 nsv8663 10 52136355 52165948 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18032,nssv18354,nssv19026,nssv17555,nssv19338,nssv19607,nssv20923 M 31 0 7 Samples from several populations that are part of the HapMap project. "" NA07029,NA10847,NA10863,NA18504,NA18563,NA18564,NA18975 nsv831872 10 52333334 52488543 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448501 S 95 1 0 "" nsv831873 10 52380616 52569546 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448502 S 95 1 0 "" nsv25442 10 52386790 52386851 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv44020 M 24 "" dgv276e1 10 52665980 52685589 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv995,esv1222,essv15949 M 271 0 0 "" NA18515 nsv831874 10 52680363 52865514 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448503 S 95 1 0 "" dgv41n21 10 52738610 52740959 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv523520,nsv519180 M 2026 0 2 "" nsv6665 10 52870013 52891499 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3879 S 9 0 1 "" NA12878 nsv523297 10 52931994 52932147 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699037 S 2026 0 1 "" nsv467195 10 52932639 52965020 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542544 S 1557 0 1 "" 1782681210_A nsv526624 10 52941060 52965020 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702945 S 2026 0 1 "" dgv277e1 10 52967781 52992342 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv14909,esv1353,esv979 M 271 0 0 "" NA19129 nsv831875 10 53025431 53219133 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448504,nssv1448505 M 95 2 0 "" nsv527322 10 53058229 53063104 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703747 S 2026 0 1 "" nsv527904 10 53058229 53069906 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704408 S 2026 0 1 "" nsv467196 10 53058229 53111013 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542545 S 1557 0 1 "" 1780862194_A nsv467197 10 53225999 53272196 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542546 S 1557 0 1 "" 1780862176_A nsv510218 10 53229140 53235140 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622251,nssv618326,nssv621414,nssv624150 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv507552 10 53238770 53244770 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617802,nssv620572 M 4 2 0 "" CHM,NA15510 esv32970 10 53259890 53269267 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99728 S 51 1 0 "" 22217 esv33593 10 53292936 53293166 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv95572,essv93098,essv98006 M 51 0 3 "" 21841,21863,22259 nsv507553 10 53327771 53333771 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617803 S 4 1 0 "" CHM nsv519743 10 53391671 53443918 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697024 S 2026 0 1 "" esv2750961 10 53396300 53680600 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6982572,essv6982573,essv6982574,essv6982575 M 771 1 0 "" BEC_568 nsv524814 10 53441091 53451513 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700808 S 2026 0 1 "" nsv507554 10 53662525 53668525 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619136 S 4 1 0 "" NA10860 nsv23999 10 54111203 54111519 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv42577 M 24 "" nsv831876 10 54162517 54319398 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448507 S 95 1 0 "" nsv518123 10 54192640 54199263 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695541 S 2026 0 1 "" nsv515970 10 54194664 54201241 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv683491,nssv690150,nssv666410,nssv675576,nssv675429,nssv658141,nssv703879,nssv679108,nssv662506,nssv665531,nssv659890,nssv698898 M 2026 1 11 "" nsv437673 10 54195515 54206557 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467554 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18506 nsv519422 10 54215596 54217463 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv660924,nssv659736,nssv682902,nssv659215,nssv676208,nssv683376,nssv656135 M 2026 0 7 "" nsv520107 10 54234413 54238670 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv680463,nssv663463,nssv660820,nssv680500 M 2026 0 4 "" nsv831877 10 54235141 54434644 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448508 S 95 0 1 "" nsv24485 10 54314731 54318814 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43063 M 24 "" nsv516525 10 54349965 54365344 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv675015,nssv655681,nssv656582,nssv668875 M 2026 4 0 "" nsv467201 10 54367629 54599009 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542547 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00717 nsv508584 10 54374771 54417388 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620079 S 4 0 1 "" NA15510 esv2750962 10 54402561 56985141 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6983404,essv6989784,essv6989783,essv6989363,essv6983403 M 771 0 1 "" BEC_649 nsv508585 10 54439382 54466810 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617379 S 4 0 1 "" CHM dgv26n17 10 54457068 54463336 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437676,nsv437675,nsv437674 M 60 0 3 "" NA18860,NA19129,NA19154 nsv25433 10 54557986 54557986 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv44011 M 24 "" nsv831878 10 54572112 54755592 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448509 S 95 1 0 "" nsv467203 10 54599009 54625302 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542548 S 1557 0 1 "" 1780854477_A esv34701 10 54599860 54607500 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6980956,essv6980955 M 771 0 1 "" NA19154 nsv442575 10 54599860 54609155 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv6676 10 54625521 54650612 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9799 S 9 1 0 "" NA18507 nsv515785 10 54651518 54763537 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv652109,nssv653050 M 2026 0 2 "" dgv91n27 10 54700119 54751285 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv467206,nsv467204 M 1557 0 2 "" HGDP00984,HGDP01090 nsv24780 10 54756507 54756733 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43358 M 24 "" dgv278e1 10 54778135 54807367 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv8032,essv12944,esv1138,esv1334 M 271 0 0 "" NA19102,NA19103 nsv516878 10 54788410 54807327 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv659109,nssv662096,nssv704628,nssv656648,nssv682446,nssv654635,nssv686546,nssv676922 M 2026 0 8 "" nsv8664 10 54788478 54811096 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22283,nssv20953 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18504,NA18972 essv15185 10 54789048 54807367 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18504 nsv442183 10 54789051 54812107 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv524194 10 54807327 54816363 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700077 S 2026 0 1 "" esv2750963 10 54820133 54907145 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6990024,essv6984789,essv6989455 M 771 0 1 "" SPC_18 nsv520422 10 54822916 54854728 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697406 S 2026 0 1 "" nsv523436 10 54868713 54922082 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699192 S 2026 0 1 "" nsv510219 10 54918233 54924233 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621420,nssv618327 M 4 0 2 "" CHM,NA15510 nsv507555 10 54987024 54993024 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620582,nssv623152,nssv617804 M 4 3 0 "" CHM,NA15510,NA18994 nsv8665 10 55011568 55031287 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17585,nssv18122,nssv19368,nssv19837,nssv17321 M 31 5 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA10847,NA11830,NA12872,NA18564 dgv279e1 10 55027142 55201043 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv9033,essv13226 M 271 0 0 "" NA19131,NA19132 dgv280e1 10 55027142 55256936 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv617,essv15761,esv802 M 271 0 0 "" NA19131 nsv515498 10 55041607 55124158 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv655080,nssv653323,nssv679751,nssv701112,nssv693485,nssv665426,nssv660482,nssv674075,nssv665858,nssv676954,nssv661707,nssv673467,nssv705208 M 2026 1 12 "" nsv8666 10 55041866 55129836 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19165,nssv18946,nssv19056,nssv21897,nssv19245 M 31 3 2 Samples from several populations that are part of the HapMap project. "" NA10863,NA18537,NA18552,NA18980,NA19132 nsv467207 10 55048674 55061424 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542552 S 1557 1 0 "" 1780854574_A nsv467208 10 55048674 55093970 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542553 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00920 nsv438174 10 55048674 55124158 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470291,nssv470292 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA19131,NA19132 dgv29e55 10 55053174 55149320 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv34353,esv34540 M 771 0 2 "" NA19131,NA19132 essv14953 10 55053174 55149320 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19132 nsv467209 10 55078860 55101088 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542554 S 1557 0 1 "" NINDS_101 dgv92n27 10 55087672 55106708 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv467210,nsv467211 M 1557 0 2 "" HGDP00009,HGDP01326 nsv437677 10 55101088 55108496 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467558 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19132 nsv437678 10 55108496 55119220 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467559 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19132 nsv818761 10 55116064 55124158 CNV Gain+Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418302,nssv1418304 M 112 1 1 "" NA19092,NA19093 nsv467212 10 55169554 55209960 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542557 S 1557 0 1 "" 1780854599_A nsv507556 10 55212341 55218341 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623157,nssv620587 M 4 2 0 "" NA15510,NA18994 nsv507557 10 55220288 55226288 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619142 S 4 1 0 "" NA10860 nsv6687 10 55322850 55358166 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv930 S 9 1 0 "" NA19240 nsv467213 10 55332095 55395240 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542558 S 1557 0 1 "" 1780854299_A nsv8667 10 55473112 55692653 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19509,nssv19637,nssv21541,nssv19867,nssv19398 M 31 0 5 Samples from several populations that are part of the HapMap project. "" NA11830,NA12740,NA18563,NA18564,NA19240 nsv527039 10 55536542 55540362 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703415 S 2026 0 1 "" nsv467214 10 55551726 55618720 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542559 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01237 nsv6698 10 55700129 55744578 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1895 S 9 0 1 "" NA18555 nsv831879 10 55729979 55880735 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448510 S 95 1 0 "" nsv467217 10 55742955 55774591 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542561 S 1557 0 1 "" NINDS_100 nsv818762 10 55754939 55763277 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415972 S 112 0 1 "" NA19142 dgv93n27 10 55754939 55802052 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv467218,nsv467219 M 1557 0 2 "" 1780854261_A,1780862194_A nsv25061 10 55762012 55762012 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43639 M 24 "" nsv516160 10 55828818 55833207 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv692928,nssv685834,nssv683139,nssv689390,nssv670412,nssv669919,nssv666546,nssv662187,nssv683578,nssv685720 M 2026 0 10 "" dgv94n27 10 55906737 55943558 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv467224,nsv467220 M 1557 0 2 "" 1782681093_A,HGDP01263 nsv467221 10 55906737 55956074 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542565 S 1557 0 1 "" 1780862176_A nsv818763 10 55909436 55943606 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418485 S 112 0 1 "" NA19193 dgv95n27 10 55915357 55932832 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv467222,nsv467223 M 1557 0 2 "" HGDP00634,HGDP00941 nsv520151 10 55917637 55932832 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv674402,nssv661249 M 2026 2 0 "" nsv467226 10 55956074 55966306 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542569 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01232 nsv6709 10 55973931 56018722 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8705 S 9 0 1 "" NA12156 nsv524035 10 55992483 55992554 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699898 S 2026 0 1 "" nsv467228 10 55992483 56013351 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542571 S 1557 0 1 "" 1780854118_A nsv467229 10 56045363 56081665 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542572 S 1557 0 1 "" 1782681110_A dgv281e1 10 56078033 56236143 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv764,essv14296,essv20045,esv737 M 271 0 0 "" NA07048,NA19194 dgv282e1 10 56106514 56143760 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv21939,essv24952,essv25130,essv25193,essv23696,essv18893 M 271 0 0 "" NA10856,NA11840,NA12057,NA12707,NA12717,NA12740 nsv8668 10 56115764 56139619 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17615,nssv18976,nssv17380,nssv19667,nssv20983,nssv17722,nssv21794,nssv19458,nssv22313,nssv24219,nssv17351,nssv20138,nssv18152,nssv19233,nssv17389,nssv19275,nssv19264,nssv21927,nssv19016,nssv19589,nssv18950,nssv18384,nssv21372,nssv19897,nssv19195,nssv19116,nssv20518,nssv21571,nssv22846 M 31 0 29 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10847,NA10863,NA11830,NA12155,NA12802,NA12872,NA18502,NA18504,NA18517,NA18537,NA18552,NA18563,NA18564,NA18572,NA18853,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19144,NA19173,NA19221,NA19240 esv33398 10 56118662 56139578 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98644 S 51 1 0 "" 22085 nsv442577 10 56122955 56138443 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv283e1 10 56127179 56138051 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv25141,essv18562,essv24160,essv22255,essv20844,essv21101 M 271 0 0 "" NA10851,NA10854,NA11829,NA11839,NA11992,NA12751 nsv520863 10 56132477 56137569 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv676568,nssv688610 M 2026 2 0 "" nsv526545 10 56132477 56224978 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702859 S 2026 0 1 "" nsv525948 10 56181286 56182893 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702155 S 2026 0 1 "" nsv24798 10 56187045 56187357 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43376 M 24 "" nsv471793 10 56219068 56219420 CNV Loss Hinds et al 2006 16327809 Oligo_aCGH,PCR Custom Perlegen arrays nssv646074 M 0.021 95 "" dgv96n27 10 56220433 56269303 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv467230,nsv467231 M 1557 0 2 "" 1780862459_A,HGDP00647 nsv516381 10 56280721 56361311 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv667932,nssv675343 M 2026 0 2 "" esv2750964 10 56285200 56365890 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6984012,essv6984013,essv6984014 M 771 0 1 "" BEC_745 nsv471794 10 56315815 56316000 CNV Loss Hinds et al 2006 16327809 Oligo_aCGH,PCR Custom Perlegen arrays nssv646075 M 0.172 95 "" nsv442578 10 56353096 56362605 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv97n27 10 56483675 56519675 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv467233,nsv467232 M 1557 0 2 "" 1782681096_A,HGDP01238 dgv98n27 10 56487560 56547766 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv467235,nsv467237,nsv467234,nsv467236 M 1557 0 4 "" 1780854299_A,1780862003_A,1780862459_A,HGDP00023 dgv284e1 10 56503549 56781399 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv343,esv21,essv14131 M 271 0 0 "" NA18861 nsv831880 10 56508796 56674455 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448511 S 95 1 0 "" nsv525145 10 56517528 56518991 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701215 S 2026 0 1 "" nsv8670 10 56527343 56531976 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19046 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19007 nsv516038 10 56551514 56663822 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv672978,nssv665859,nssv676481,nssv684982,nssv668002,nssv681072,nssv676102,nssv689325,nssv659956,nssv679792,nssv701222,nssv693892,nssv684560,nssv684388,nssv685192,nssv688987,nssv703673,nssv655727 M 2026 1 17 "" nsv467239 10 56567832 56575953 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542582 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01337 nsv467240 10 56590845 56883032 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542583 S 1557 0 1 "" 1780854335_A nsv818764 10 56597426 56603927 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417181 S 112 1 0 "" NA18550 nsv467242 10 56603277 56682521 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542584 S 1557 0 1 "" 1780854477_A dgv99n27 10 56642818 56681877 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv467245,nsv467246 M 1557 0 2 "" HGDP00643,HGDP01213 nsv467248 10 56670064 56697064 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542587 S 1557 0 1 "" NINDS_95 dgv100n27 10 56674869 56706669 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv467250,nsv467251 M 1557 0 2 "" HGDP00047,HGDP01197 nsv467252 10 56705391 56738482 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542591 S 1557 0 1 "" NINDS_125 nsv467253 10 56709068 56962466 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542592 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01260 nsv8671 10 56746000 56756361 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21013 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18504 nsv467254 10 56804994 56962466 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542593 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01277 nsv818765 10 56840644 56850865 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417379 S 112 0 1 "" NA18949 nsv442184 10 56849158 56852828 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv285e1 10 56849158 56853483 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv3630,esv1139,esv1271,essv931,essv3848 M 271 0 0 "" NA18949,NA18953,NA18966 nsv519508 10 56850865 56853083 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696890 S 2026 0 1 "" dgv286e1 10 56872041 56988850 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv18480,esv1109,esv1326 M 271 0 0 "" NA12156 nsv6720 10 56887586 56983615 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6398 S 9 0 1 "" NA12156 nsv433260 10 56891789 56942563 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463141 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA12156 nsv433510 10 56949159 56960734 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463391 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA12156 nsv521258 10 57021787 57022044 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv688820,nssv690949 M 2026 0 2 "" nsv467256 10 57084560 57126267 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542594 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00009 nsv437680 10 57107107 57123501 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467561 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19173 nsv516121 10 57108413 57398714 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv656795,nssv690788,nssv701443,nssv666334 M 2026 0 4 "" nsv510220 10 57123266 57129266 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622257 S 4 0 1 "" NA10860 nsv831881 10 57174995 57366346 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448512 S 95 0 1 "" nsv510221 10 57275827 57281827 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618328 S 4 0 1 "" CHM esv2750965 10 57304818 57449236 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6980744,essv6980743,essv6980742,essv6985393 M 771 1 0 "" BEC_131 nsv6731 10 57313770 57349118 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv940 S 9 1 0 "" NA19240 esv2750966 10 57424600 57693400 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6989283,essv6989570 M 771 0 1 "" BEC_520 nsv467257 10 57511522 57636336 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542595 S 1557 0 1 "" 1780862176_A nsv831883 10 57617765 57809062 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448515,nssv1448514,nssv1448513 M 95 2 1 "" nsv24490 10 57644639 57644639 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43068 M 24 "" nsv24513 10 57671436 57672696 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43091 M 24 "" nsv525189 10 57707499 57753644 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701267 S 2026 0 1 "" nsv6743 10 57810962 57856511 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6399 S 9 0 1 "" NA12156 nsv831884 10 57814572 57959639 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448530,nssv1448521,nssv1448520,nssv1448516,nssv1448532,nssv1448519,nssv1448524,nssv1448522,nssv1448523,nssv1448526,nssv1448531,nssv1448525,nssv1448527,nssv1448528 M 95 0 14 "" nsv517747 10 57966230 58143741 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv691841,nssv688516,nssv679017,nssv657393,nssv682903,nssv687651,nssv655682,nssv671113,nssv653089,nssv662097 M 2026 0 10 "" nsv509355 10 57989268 58013646 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619669,nssv623657,nssv621014 M 4 3 0 "" NA10860,NA15510,NA18994 dgv287e1 10 58160636 58359959 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv16537,esv651,esv665 M 271 0 0 "" NA19210 nsv437117 10 58167576 58201241 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv466998 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA12802 nsv8672 10 58173632 58177406 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18182 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA07029 dgv101n27 10 58175141 58180737 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv467261,nsv467259,nsv467262 M 1557 0 3 "" 1780854299_A,1782681096_A,NINDS_106 dgv102n27 10 58176378 58180737 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv467264,nsv467263,nsv467265,nsv467266 M 1557 0 4 "" 1782681093_A,NINDS_104,NINDS_42,NINDS_99 nsv467267 10 58176378 58189264 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542604 S 1557 0 1 "" NINDS_67 nsv519989 10 58179360 58180230 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv663751,nssv659957 M 2026 0 2 "" nsv437681 10 58180737 58201241 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467562 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18863 nsv517118 10 58181660 58189264 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv674730,nssv662832,nssv659172,nssv684468,nssv654929,nssv690789,nssv685997,nssv656113,nssv676103,nssv675438,nssv653235,nssv693368,nssv693053,nssv660350,nssv665004,nssv685157,nssv682042,nssv665036,nssv664247,nssv653813,nssv656755,nssv693562,nssv692049,nssv687513,nssv660714,nssv681295,nssv654586,nssv690771,nssv690863,nssv688061,nssv653324,nssv660729,nssv662009,nssv687998,nssv661668,nssv653940,nssv684016,nssv684238,nssv680531,nssv677121,nssv663392,nssv673730,nssv653620,nssv667819,nssv655440,nssv691690,nssv657681,nssv678963,nssv671623,nssv660238,nssv671978,nssv662396,nssv691744,nssv657091,nssv657408,nssv659098,nssv674552,nssv665199,nssv656649,nssv684330,nssv672400,nssv664887,nssv654602,nssv675461,nssv694007,nssv677831,nssv669059,nssv686129,nssv656772,nssv683664,nssv656606,nssv689373,nssv664155,nssv670381,nssv654858,nssv680612,nssv659934,nssv690206,nssv654898,nssv689140,nssv670504,nssv673249,nssv683411,nssv676541,nssv691446,nssv680282,nssv658061,nssv657065,nssv664390,nssv657781,nssv670413,nssv665471,nssv693394,nssv667718,nssv654277,nssv694762,nssv688304,nssv682823,nssv661047,nssv691895,nssv689479,nssv662998,nssv659974,nssv652120,nssv673122,nssv665112,nssv687125,nssv683427,nssv675069,nssv676250,nssv674767,nssv681457,nssv665161,nssv653403,nssv667649,nssv686547,nssv661315,nssv687808,nssv667210,nssv693594,nssv684794,nssv663607,nssv666014,nssv669233,nssv673579,nssv691567,nssv690302,nssv679610,nssv679162,nssv672943,nssv692773,nssv663844,nssv686991,nssv656070,nssv684248,nssv687254,nssv692575,nssv659031,nssv691323,nssv683610,nssv670929,nssv666583,nssv655782,nssv670463,nssv689866,nssv679888,nssv668484,nssv678448,nssv689449,nssv657946,nssv673137,nssv674295,nssv683479,nssv653073,nssv666713,nssv682366,nssv657196,nssv661868,nssv682919,nssv671103,nssv691055,nssv671563,nssv677637,nssv688168,nssv670530,nssv689031,nssv665759,nssv684076,nssv672504,nssv689622,nssv659110,nssv681951,nssv660116,nssv664229,nssv679967,nssv679349,nssv693623,nssv685223,nssv688040,nssv686632,nssv664401 M 2026 0 181 "" nsv8673 10 58182434 58204954 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17440 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA12802 esv33121 10 58183659 58186479 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99615 S 51 0 1 "" 22217 nsv467268 10 58185524 58187279 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542605 S 1557 0 1 "" 1780862084_A dgv103n27 10 58185524 58189264 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv467274,nsv467275,nsv467273,nsv467272,nsv467276,nsv467277,nsv467270,nsv467269 M 1557 0 8 "" 1780854462_A,1780862206_A,1780862345_A,HGDP00019,HGDP00206,HGDP00237,HGDP00254,HGDP00309 nsv818767 10 58185524 58189264 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416582,nssv1416657,nssv1415983,nssv1415853,nssv1418306,nssv1418305,nssv1416656,nssv1416770,nssv1416771 M 112 0 9 "" NA11992,NA19092,NA19094,NA19116,NA19120,NA19141,NA19159,NA19161,NA19172 nsv467278 10 58185524 58227959 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542615 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00307 nsv528656 10 58185524 58227959 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705290 S 2026 0 1 "" nsv442579 10 58186381 58196843 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv438175 10 58186930 58195193 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470294,nssv470293 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA12802,NA12815 nsv467279 10 58187279 58189264 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542616 S 1557 0 1 "" 1780862403_A nsv6754 10 58233572 58267149 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv942 S 9 1 0 "" NA19240 essv15155 10 58237729 58314518 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19210 nsv527403 10 58247808 58247858 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703839 S 2026 0 1 "" dgv30e55 10 58382083 58424500 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv34304,esv35101 M 771 2 0 "" NA10856,NA12264 nsv6765 10 58407269 58441165 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8722 S 9 1 0 "" NA12156 nsv442185 10 58410019 58421992 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv818768 10 58420209 58421439 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417774 S 112 1 0 "" NA12264 essv3446 10 58492250 58535262 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18956 dgv288e1 10 58492250 58618213 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv969,esv1071,essv4513 M 271 0 0 "" NA18623 nsv6776 10 58509173 58540509 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1896 S 9 0 1 "" NA18555 nsv8674 10 58514705 58521628 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22875,nssv21957,nssv18414 M 31 0 3 Samples from several populations that are part of the HapMap project. "" NA18860,NA18975,NA19132 nsv442186 10 58516320 58519894 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv289e1 10 58516581 58535262 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1046,essv5853,essv3329,essv984,essv1815 M 271 0 0 "" NA18555,NA18948,NA18964,NA18971,NA18975 nsv510222 10 58534683 58540683 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621431 S 4 0 1 "" NA15510 dgv290e1 10 58552764 58618213 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2552,essv2368,essv5426,essv4318,essv193,essv2415 M 271 0 0 "" NA18542,NA18564,NA18951,NA18974,NA18994,NA18995 dgv31e55 10 58553178 58618213 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv34551,esv34869,esv35059,esv34583 M 771 0 4 "" NA18564,NA18572,NA18974,NA18995 dgv104n27 10 58555652 58606559 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv467281,nsv467280 M 1557 0 2 "" HGDP00883,HGDP00968 nsv8675 10 58563614 58607223 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19488,nssv17449,nssv22343 M 31 0 3 Samples from several populations that are part of the HapMap project. "" NA18564,NA18572,NA18972 nsv442580 10 58572176 58606913 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv32e55 10 58572176 58606915 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv34557,esv34631 M 771 0 2 "" NA18542,NA18972 nsv520720 10 58575853 58606559 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv674788,nssv690558 M 2026 0 2 "" dgv6n64 10 58575853 58615726 CNV Loss Wang_et_al_2007 17921354 SNP_array nsv818769,nsv818770 M 112 0 4 "" NA18542,NA18951,NA18972,NA18994 dgv105n27 10 58575853 58618213 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv467286,nsv467285 M 1557 0 2 "" HGDP00751,HGDP00957 dgv291e1 10 58575853 58618213 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv3673,essv2948 M 271 0 0 "" NA18943,NA18972 nsv467287 10 58583657 58640012 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542624 S 1557 0 1 "" 1780862109_A nsv25128 10 58685233 58685574 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43706 M 24 "" nsv438176 10 58761341 58769683 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470302,nssv470303,nssv470298,nssv470304,nssv470295,nssv470299,nssv470300,nssv470301 M 269 0 8 Samples from several populations that are part of the HapMap project. "" NA06991,NA06993,NA07000,NA07029,NA10835,NA12248,NA12707,NA12717 nsv527941 10 58761744 58783409 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704449 S 2026 1 0 "" nsv8676 10 58879568 58882168 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21601,nssv18980,nssv21462,nssv20548,nssv17470,nssv21043,nssv19539 M 31 0 7 Samples from several populations that are part of the HapMap project. "" NA12740,NA12802,NA18502,NA18504,NA18853,NA19144,NA19240 nsv471795 10 58879748 58881875 CNV Loss Hinds et al 2006 16327809 Oligo_aCGH,PCR Custom Perlegen arrays nssv646076 M 0.570 95 "" nsv442581 10 58880511 58880997 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv292e1 10 59214388 59489499 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv6503,esv726,esv574,essv6403 M 271 0 0 "" NA18572 nsv8677 10 59240783 59441804 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19305,nssv19294,nssv24245,nssv17479 M 31 1 3 Samples from several populations that are part of the HapMap project. "" NA10839,NA18537,NA18572,NA19221 esv35063 10 59242689 59442194 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6979565,essv6979564,essv6979563,essv6979562,essv6988199 M 771 0 1 "" NA18572 nsv831885 10 59260246 59432219 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448535,nssv1448534,nssv1448536,nssv1448533 M 95 1 3 "" nsv437682 10 59401605 59402787 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467563 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18872 nsv6787 10 59436038 59469683 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5291 S 9 1 0 "" NA19129 nsv8678 10 59489461 59494169 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19263 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA07048 nsv520358 10 59516124 59558004 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv676072,nssv663205 M 2026 2 0 "" nsv523614 10 59516124 59611458 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699410 S 2026 1 0 "" nsv519325 10 59608342 59611458 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv681053,nssv655421,nssv683220 M 2026 0 3 "" nsv520102 10 59608342 59613240 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697224 S 2026 0 1 "" nsv508586 10 59945952 60051055 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618930 S 4 0 1 "" NA10860 esv32825 10 59947227 59947686 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98219 S 51 0 1 "" 21772 esv32723 10 59950327 59951410 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98175,essv96987,essv99135,essv93699,essv99703 M 51 0 5 "" 21772,21817,21938,21972,22217 nsv831886 10 60095348 60270652 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448538,nssv1448537 M 95 2 0 "" nsv6798 10 60145651 60179241 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8729 S 9 1 0 "" NA12156 nsv831887 10 60280752 60517946 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448539 S 95 1 0 "" dgv293e1 10 60388039 60641367 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv582,essv15078,esv777 M 271 0 0 "" NA19129 essv13631 10 60482549 60641367 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19127 nsv6809 10 60483158 60527939 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8736 S 9 0 1 "" NA12156 essv14908 10 60506139 60566271 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19129 esv34715 10 60525900 60609068 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6978501,essv6978500,essv6978499,essv6986636 M 771 1 0 "" NA19127 essv11381 10 60525908 60566271 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19127 esv34756 10 60525908 60566300 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6978512,essv6978511 M 771 1 0 "" NA19129 nsv433412 10 60527948 60571609 CNV Gain Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463293 S 9 1 0 Samples from several populations that are part of the HapMap project. "" NA19129 nsv831888 10 60613661 60808257 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448541 S 95 1 0 "" nsv528505 10 60714605 60720345 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705112 S 2026 0 1 "" nsv507558 10 60739059 60745059 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619160,nssv620599,nssv623163 M 4 3 0 "" NA10860,NA15510,NA18994 nsv467289 10 60745219 60809875 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542625 S 1557 0 1 "" 1780854039_A nsv508587 10 60820903 60948851 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622684 S 4 0 1 "" NA18994 dgv294e1 10 60994141 61003145 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1058,esv1244,essv9294 M 271 0 0 "" NA18852 nsv818771 10 60994582 61001093 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417901 S 112 0 1 "" NA18852 dgv27n17 10 61024452 61039986 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437684,nsv437683 M 60 0 2 "" NA19103,NA19211 nsv521848 10 61028388 61033830 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694623 S 2026 0 1 "" nsv818772 10 61028388 61035111 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418174,nssv1418175 M 112 0 2 "" NA19143,NA19145 dgv28n17 10 61028388 61042363 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437119,nsv437118 M 60 0 2 "" NA10831,NA10846 dgv106n27 10 61028388 61048410 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv467291,nsv467290 M 1557 0 2 "" HGDP00820,HGDP01251 nsv517433 10 61032706 61033830 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv657634,nssv667080,nssv678801,nssv670930,nssv678584,nssv655837,nssv687439,nssv689785,nssv681016,nssv677062,nssv652007,nssv691011,nssv660767,nssv654536,nssv688290 M 2026 0 15 "" nsv527838 10 61033830 61035111 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704336 S 2026 0 1 "" nsv442582 10 61034136 61035270 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv25344 10 61326659 61326659 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43922 M 24 "" nsv528497 10 61909509 61940043 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705102 S 2026 0 1 "" nsv527065 10 61926291 61929230 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703444 S 2026 0 1 "" nsv525521 10 61926291 61936152 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701654 S 2026 0 1 "" nsv8679 10 62097051 62098330 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24271,nssv21103,nssv21824 M 31 0 3 Samples from several populations that are part of the HapMap project. "" NA18504,NA18517,NA19221 nsv471796 10 62097209 62098334 CNV Loss Hinds et al 2006 16327809 Oligo_aCGH,PCR Custom Perlegen arrays nssv646077 M 0.064 95 "" nsv525275 10 62182490 62189035 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701376 S 2026 0 1 "" nsv525421 10 63006323 63071428 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701545 S 2026 1 0 "" nsv525654 10 63017048 63059924 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701809 S 2026 1 0 "" nsv523818 10 63073241 63082645 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699649 S 2026 0 1 "" dgv42n21 10 63073241 63163730 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv528134,nsv527596 M 2026 0 2 "" nsv518486 10 63235561 63246292 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695926 S 2026 0 1 "" nsv8681 10 63326563 64101295 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17500,nssv19335,nssv19569 M 31 3 0 Samples from several populations that are part of the HapMap project. "" NA12740,NA12802,NA18537 nsv24157 10 63413621 63413798 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv42735 M 24 "" nsv831889 10 63417310 63605446 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448542 S 95 0 1 "" nsv6820 10 63574336 63607977 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5292 S 9 1 0 "" NA19129 nsv831890 10 63597548 63751512 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448543,nssv1448544 M 95 2 0 "" nsv6831 10 63614566 63647712 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv943 S 9 1 0 "" NA19240 nsv467292 10 63660780 63730274 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542628 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00133 nsv521637 10 63729869 63730274 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698255 S 2026 0 1 "" nsv467293 10 63826116 63894106 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542629 S 1557 1 0 "" NINDS_56 nsv831891 10 63838913 64013484 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448545 S 95 1 0 "" esv33660 10 63927175 63928711 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98091 S 51 0 1 "" 22259 nsv516259 10 64179035 64186312 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv654636,nssv675622,nssv673597,nssv683772,nssv680930,nssv667136,nssv678088,nssv676073,nssv689326,nssv685027,nssv690437,nssv661316 M 2026 0 12 "" nsv510223 10 64683176 64689176 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618329 S 4 0 1 "" CHM nsv831892 10 64713092 64768321 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448554,nssv1448546,nssv1448548,nssv1448550,nssv1448549,nssv1448547,nssv1448553,nssv1448552 M 95 1 7 "" nsv521888 10 65101308 65101772 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694660 S 2026 0 1 "" nsv519002 10 65111759 65113760 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696471 S 2026 0 1 "" nsv520761 10 65131799 65149421 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697595 S 2026 1 0 "" nsv526157 10 65131799 65149421 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702416 S 2026 0 1 "" nsv521236 10 65184410 65189562 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697861 S 2026 0 1 "" nsv24010 10 65248266 65249109 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv42588 M 24 "" nsv831894 10 65276087 65434532 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448556,nssv1448555,nssv1448557 M 95 3 0 "" nsv507559 10 65293804 65299804 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619163,nssv617805,nssv623173,nssv620602 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv521959 10 65303906 65304118 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694728 S 2026 0 1 "" nsv520566 10 65459484 65572333 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697490 S 2026 0 1 "" nsv519093 10 65473376 65487798 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696566 S 2026 0 1 "" nsv831895 10 65572224 65748693 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448560,nssv1448559,nssv1448558 M 95 3 0 "" nsv510224 10 65691401 65697401 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621438 S 4 0 1 "" NA15510 nsv6842 10 65697598 65721279 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10761 S 9 1 0 "" NA18956 nsv6854 10 65732917 65765262 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8743 S 9 0 1 "" NA12156 esv2750967 10 65751090 65922000 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6989752,essv6983197 M 771 0 1 "" BEC_554 nsv522701 10 65833622 65858834 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv706112 S 2026 0 1 "" nsv467296 10 65842310 65858834 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542630 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00106 nsv6865 10 65860062 65891285 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6400 S 9 1 0 "" NA12156 nsv831896 10 65988685 66153735 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448561 S 95 1 0 "" nsv523379 10 66039832 66096831 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699128 S 2026 0 1 "" nsv525558 10 66053372 66088232 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701697 S 2026 1 0 "" nsv521837 10 66092550 66096831 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694610 S 2026 0 1 "" nsv437685 10 66102105 66120490 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467566 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19100 nsv442188 10 66105900 66109037 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv438177 10 66106212 66107646 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470305,nssv470306 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA19099,NA19100 nsv526280 10 66250585 66254124 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702559 S 2026 0 1 "" nsv24531 10 66299034 66306237 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43109 M 24 "" nsv6876 10 66394570 66425938 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5293 S 9 1 0 "" NA19129 nsv831897 10 66414664 66601022 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448563 S 95 1 0 "" dgv107n27 10 66442050 66802305 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv467297,nsv467298,nsv467300 M 1557 3 0 "" HGDP00076,HGDP00145,HGDP00155 nsv831898 10 66510550 66685864 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448566,nssv1448567,nssv1448564,nssv1448565 M 95 1 3 "" nsv6887 10 66513473 66548545 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv944 S 9 1 0 "" NA19240 nsv522052 10 66605539 66610798 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694822 S 2026 0 1 "" nsv519223 10 66605539 66614006 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696712 S 2026 1 0 "" nsv525559 10 66712209 66712719 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701698 S 2026 0 1 "" nsv528124 10 66846854 66869775 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704668 S 2026 0 1 "" esv33944 10 66931359 66988205 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97479,essv98184,essv94685,essv95742,essv93146,essv99075,essv93641,essv97203,essv99803,essv99662,essv94871,essv98048,essv100398,essv96252 M 51 9 5 "" 21616,21772,21791,21841,21863,21938,21972,22075,22086,22217,22231,22259,22300,22371 nsv517499 10 66933255 66988866 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv659570,nssv680390,nssv656455,nssv652193,nssv683757,nssv667854 M 2026 0 6 "" nsv508588 10 66963721 67006604 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620091,nssv618935 M 4 0 2 "" NA10860,NA15510 nsv6898 10 66971127 66999598 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10762,nssv1897 M 9 0 2 "" NA18555,NA18956 nsv437122 10 66974015 66983475 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467003 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA12740 nsv437120 10 66974015 66988454 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467001 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA10857 nsv437121 10 66974015 67008212 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467002 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA10855 nsv8682 10 66976803 66985492 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19599,nssv18474,nssv19697,nssv17645,nssv19927,nssv17782,nssv19365,nssv19076,nssv17509,nssv22373,nssv19518,nssv20168,nssv19225 M 31 0 13 Samples from several populations that are part of the HapMap project. "" NA10847,NA11830,NA12155,NA12740,NA18537,NA18563,NA18564,NA18572,NA18942,NA18972,NA18975,NA18980,NA19007 nsv442583 10 66977929 66984452 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv438178 10 66980424 66983475 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470310,nssv470307,nssv470309 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA19206,NA19208 nsv433512 10 66980652 66983475 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463393 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA18956 nsv437123 10 66982114 66988454 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467004 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA10847 nsv520524 10 66997173 67000113 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697468 S 2026 0 1 "" nsv437686 10 66997173 67033058 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467567 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19154 nsv520171 10 67006691 67014715 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697261 S 2026 0 1 "" nsv471797 10 67012194 67014238 CNV Loss Hinds et al 2006 16327809 Oligo_aCGH,PCR Custom Perlegen arrays nssv646078 M 0.300 95 "" nsv442584 10 67013460 67013961 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv831899 10 67051870 67209021 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448568 S 95 1 0 "" nsv6909 10 67128399 67161738 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8751 S 9 1 0 "" NA12156 nsv437687 10 67152738 67181098 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467568 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19161 nsv467305 10 67155505 67188052 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542634 S 1557 0 1 "" 1780862194_A nsv467307 10 67173087 67196918 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542635 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00155 dgv43n21 10 67230496 67276965 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv526065,nsv526072 M 2026 0 2 "" nsv526960 10 67287066 67300129 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703332 S 2026 0 1 "" nsv831900 10 67351594 67514802 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448569 S 95 1 0 "" nsv467309 10 67450733 68059454 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542636 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00785 nsv467310 10 67450904 67456130 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542637 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01262 nsv6920 10 67512851 67544637 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv945 S 9 1 0 "" NA19240 esv2422303 10 67528141 67971209 CNV Deletion Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161418 S 181 0 1 "" ND03710 nsv517151 10 67541847 67550131 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv693735,nssv660073,nssv653879,nssv693026,nssv687201,nssv655202 M 2026 0 6 "" nsv528453 10 67541847 67565281 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705052 S 2026 0 1 "" esv2422469 10 67603464 67658895 CNV Deletion Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161314 S 181 0 1 "" ND02296 esv2750968 10 67605477 67756141 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6984418,essv6987592,essv6984419 M 771 1 0 "" BEC_705 nsv525402 10 67630469 67634520 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701525 S 2026 0 1 "" nsv517910 10 67634379 67634520 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695320 S 2026 0 1 "" nsv467312 10 67638618 68175964 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542638 S 1557 1 0 "" 1780862207_A nsv525635 10 67665462 67671683 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701789 S 2026 0 1 "" nsv527479 10 67670017 67670706 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703924 S 2026 1 0 "" nsv6931 10 67670164 67703145 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6401 S 9 1 0 "" NA12156 nsv467315 10 67735735 67759307 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542639 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00478 dgv108n27 10 67748487 67759307 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv467319,nsv467318 M 1557 0 2 "" 1782681295_A,HGDP00900 nsv467320 10 67748487 67766225 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542643 S 1557 0 1 "" 1780862126_A dgv109n27 10 67748487 67785209 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv467322,nsv467325,nsv467324,nsv467323,nsv467321 M 1557 0 5 "" 1780854023_A,1780854455_A,1780862125_A,HGDP00883,HGDP00892 nsv517024 10 67748487 67785209 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv653634,nssv692465,nssv681796,nssv674382,nssv657898,nssv665602,nssv673417,nssv682836,nssv654372,nssv698495,nssv664589,nssv677336,nssv683504,nssv670338,nssv690280,nssv693772,nssv680283,nssv679840,nssv675623,nssv668771 M 2026 1 19 "" nsv831901 10 67806906 67940251 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448577,nssv1448579,nssv1448578,nssv1448581,nssv1448582,nssv1448580,nssv1448572,nssv1448570,nssv1448571,nssv1448575,nssv1448574,nssv1448576 M 95 12 0 "" nsv831902 10 67828946 67859305 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448585,nssv1448586,nssv1448587,nssv1448583 M 95 0 4 "" esv2750969 10 67841800 67948325 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6982684,essv6989320,essv6989667 M 771 0 1 "" BEC_58 nsv510225 10 67876976 67882976 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621441 S 4 0 1 "" NA15510 nsv519703 10 67878895 67895016 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697001 S 2026 0 1 "" nsv527987 10 67878895 67934190 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704506 S 2026 0 1 "" nsv523116 10 67878895 67976820 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698815 S 2026 1 0 "" esv2750970 10 67879500 67935343 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6989346,essv6989738,essv6983133 M 771 0 1 "" BEC_546 nsv467329 10 67891243 67934190 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542650 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00590 esv2750971 10 67913368 67969901 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6982587,essv6989314,essv6989652 M 771 0 1 "" BEC_569 nsv521580 10 67920659 67924563 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698195 S 2026 1 0 "" nsv467330 10 67924563 68143405 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542651 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01339 nsv467331 10 67933993 67995124 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542652 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00534 nsv517405 10 67938287 68088852 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv651927,nssv663206,nssv698746,nssv675493,nssv655877,nssv685806,nssv668003,nssv688602,nssv660266,nssv666276,nssv681114,nssv702407,nssv665891,nssv676482,nssv690623,nssv701032,nssv658760,nssv686659,nssv666848,nssv688500,nssv671683,nssv680501,nssv675142,nssv654661,nssv689826,nssv698128,nssv685686,nssv654352,nssv658088,nssv686198,nssv678840,nssv696910,nssv682447,nssv686699,nssv700913 M 2026 0 35 "" dgv110n27 10 67944124 68050599 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv467332,nsv467333 M 1557 0 2 "" 1780854327_A,HGDP00702 nsv442190 10 67944731 67948321 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv467334 10 67953241 68023745 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542655 S 1557 0 1 "" 1780862309_A essv1339 10 67987416 68078527 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18973 dgv295e1 10 67987416 68162396 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv676,essv840,esv793 M 271 0 0 "" NA18973 nsv467336 10 67991607 68034046 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542656 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00105 nsv467337 10 67999188 68127819 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542657 S 1557 0 1 "" 1780862595_A nsv467340 10 68005535 68013385 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542659 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00821 nsv467341 10 68005535 68267136 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542660 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01380 nsv6942 10 68010022 68045253 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv946 S 9 1 0 "" NA19240 nsv831903 10 68022959 68184384 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448588 S 95 0 1 "" nsv467342 10 68023745 68069165 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542661 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01065 nsv467344 10 68050599 68100834 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542662 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01327 nsv524840 10 68064862 68112054 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700842 S 2026 0 1 "" nsv467345 10 68088852 68113302 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542663 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01295 nsv522267 10 68095473 68100834 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695047 S 2026 0 1 "" nsv467346 10 68098864 68156906 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542664 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00938 nsv523509 10 68127614 68216254 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699280 S 2026 0 1 "" nsv467347 10 68127614 68263922 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542665 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01153 nsv8683 10 68157292 68181431 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19006 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18552 nsv527409 10 68160982 68305039 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703847 S 2026 0 1 "" dgv44n21 10 68180377 68268934 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv518502,nsv520334 M 2026 0 2 "" nsv467348 10 68251353 68270504 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542666 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00080 nsv510226 10 68279326 68285326 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622262 S 4 0 1 "" NA10860 nsv467349 10 68290263 68297491 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542667 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01260 nsv524188 10 68300086 68300570 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700071 S 2026 0 1 "" nsv467351 10 68352822 68391583 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542669 S 1557 0 1 "" 1780862003_A dgv33e55 10 68359573 68608300 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv2750973,esv2750972,esv2750974 M 771 3 0 "" BEC_696,BEC_820,SPC_15 nsv520745 10 68411841 68592248 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv674923,nssv677442 M 2026 2 0 "" nsv831905 10 68526271 68669419 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448589 S 95 1 0 "" nsv6953 10 68576915 68609478 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1898 S 9 1 0 "" NA18555 nsv467353 10 68616511 68776378 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542670 S 1557 1 0 "" 1780854477_A nsv24302 10 68728705 68736553 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv42880 M 24 "" nsv831906 10 68867744 68901104 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448590 S 95 0 1 "" nsv6966 10 68984548 69018756 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1899 S 9 0 1 "" NA18555 nsv433261 10 68996992 69017123 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463142 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA18555 nsv467354 10 69018764 69101004 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542671 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01033 nsv515950 10 69029027 69101004 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704740,nssv659703,nssv665427 M 2026 2 1 "" nsv6977 10 69375481 69409209 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3880 S 9 1 0 "" NA12878 nsv521328 10 69584587 69592741 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697934 S 2026 1 0 "" nsv526735 10 69653133 69661859 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703078 S 2026 0 1 "" nsv437125 10 69733542 69745575 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467006 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA12753 nsv517615 10 69734515 69739239 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv679968,nssv680031,nssv676170,nssv674699,nssv675016,nssv687543,nssv681663,nssv690207,nssv670157,nssv661631,nssv653423,nssv688681,nssv654310,nssv664721,nssv670685,nssv686063,nssv655660,nssv658426,nssv684950,nssv663964,nssv683821,nssv673468,nssv677081,nssv693369,nssv652520,nssv658203,nssv682104,nssv682670,nssv661869,nssv686482,nssv660301,nssv666312,nssv657376 M 2026 0 33 "" nsv6988 10 69801287 69826957 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5294,nssv6402 M 9 2 0 "" NA12156,NA19129 nsv524412 10 70075243 70075545 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700334 S 2026 0 1 "" nsv510227 10 70122495 70128495 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622264,nssv624166 M 4 0 2 "" NA10860,NA18994 dgv296e1 10 70127725 70301318 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv10800,esv433,essv9381,esv432,essv16245 M 271 0 0 "" NA18523,NA18853,NA19161 nsv6999 10 70149329 70162545 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8770 S 9 1 0 "" NA12156 nsv8684 10 70174479 70179430 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21854 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18517 nsv437688 10 70280215 70296290 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467569 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18854 nsv8685 10 70282579 70298562 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19010 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18853 nsv442191 10 70282650 70292123 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv516725 10 70286205 70288865 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv683773,nssv670464,nssv680464,nssv685721 M 2026 0 4 "" nsv818773 10 70286205 70288865 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417903,nssv1416774,nssv1417902,nssv1416773 M 112 0 4 "" NA18853,NA18854,NA19159,NA19161 nsv831907 10 70301736 70459411 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448591 S 95 1 0 "" nsv519999 10 70361714 70445087 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv677258,nssv660009,nssv685613 M 2026 0 3 "" nsv7010 10 70532008 70576703 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8778 S 9 0 1 "" NA12156 nsv508589 10 70595773 70706039 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622691 S 4 0 1 "" NA18994 dgv297e1 10 70708723 70722894 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv988,essv8040,esv1113 M 271 0 0 "" NA19103 nsv524428 10 70722514 70726156 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700355 S 2026 0 1 "" nsv523004 10 70888100 70907542 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698676 S 2026 0 1 "" nsv524063 10 70901074 70907542 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699930 S 2026 0 1 "" nsv7021 10 70908501 70990185 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3881,nssv8792,nssv3882,nssv10763,nssv8786,nssv11240 M 9 0 4 "" NA12156,NA12878,NA15510,NA18956 nsv524514 10 70919814 70925917 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700458 S 2026 0 1 "" nsv508590 10 70924168 70962310 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622693 S 4 0 1 "" NA18994 nsv467356 10 70925753 70961746 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542672 S 1557 0 1 "" 1798860587_A esv32737 10 70933992 72216609 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97538,essv98301,essv94691,essv97060,essv95630,essv99073,essv93626,essv98557,essv99906,essv95988,essv96066,essv98040,essv99350,essv99282,essv100351,essv99363,essv94223 M 51 15 2 "" 21616,21772,21791,21817,21841,21938,21972,22085,22086,22127,22259,22275,22300,22335,22394 nsv8686 10 70941950 70945878 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24327 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19221 nsv520692 10 70942024 70942140 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697560 S 2026 1 0 "" nsv510228 10 70945814 70951814 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621444,nssv618330 M 4 0 2 "" CHM,NA15510 nsv53 10 70946349 70962911 CNV Loss Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv53 S 1 0 1 "" NA15510 nsv8687 10 70949290 70961425 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19395,nssv17569,nssv17539,nssv19255,nssv19036,nssv18504,nssv17675 M 31 0 6 Samples from several populations that are part of the HapMap project. "" NA10847,NA18537,NA18552,NA18572,NA18975,NA18980 nsv437126 10 70949373 70965123 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467007 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA10847 dgv111n27 10 70953496 70966974 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv467357,nsv467362,nsv467359,nsv467363,nsv467360,nsv467358 M 1557 0 6 "" HGDP00717,HGDP00750,HGDP00956,HGDP01312,HGDP01331,HGDP01333 nsv515867 10 70953496 70966974 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv693756,nssv665089,nssv672914,nssv684964,nssv681296,nssv690950 M 2026 0 6 "" dgv16n6 10 70984964 70985082 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv25106,nsv24165 M 24 "" nsv7032 10 71033217 71067262 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8801 S 9 1 0 "" NA12156 nsv509356 10 71035924 71098081 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621040 S 4 1 0 "" NA15510 dgv45n21 10 71079849 71085247 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv521284,nsv518224 M 2026 0 2 "" nsv467364 10 71121878 71133188 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542680 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01247 nsv467365 10 71139975 71158046 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542681 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00330 nsv524702 10 71176792 71178146 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700685 S 2026 0 1 "" nsv517781 10 71206453 71209587 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705697,nssv693624,nssv678585,nssv653236 M 2026 4 0 "" nsv516370 10 71231005 71250126 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv693457,nssv667820 M 2026 2 0 "" nsv7043 10 71258418 71281145 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8808 S 9 1 0 "" NA12156 nsv519900 10 71258510 71260984 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv674018,nssv678290,nssv659412,nssv682316 M 2026 4 0 "" nsv509358 10 71273226 71398524 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621044 S 4 1 0 "" NA15510 nsv527896 10 71318322 71319052 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704400 S 2026 0 1 "" nsv520046 10 71343934 71349085 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697194 S 2026 0 1 "" nsv515936 10 71442025 71466364 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv665379,nssv681326 M 2026 2 0 "" nsv7054 10 71552203 71585749 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3883 S 9 1 0 "" NA12878 nsv510229 10 71602473 71608473 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621447,nssv624171 M 4 0 2 "" NA15510,NA18994 nsv831908 10 71640488 71819707 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448592 S 95 1 0 "" nsv507560 10 71790200 71796200 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623193,nssv619178,nssv620627,nssv617806 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv7065 10 71933137 71966413 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1900 S 9 1 0 "" NA18555 nsv24389 10 71953017 71956393 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv42967 M 24 "" nsv517624 10 71981400 71985220 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv667460,nssv657410,nssv680905,nssv665660,nssv685957,nssv652572 M 2026 0 6 "" nsv467367 10 71985220 72014585 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542682 S 1557 0 1 "" NINDS_173 nsv527213 10 71999476 72001421 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703613 S 2026 0 1 "" nsv24432 10 72012813 72012883 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43010 M 24 "" nsv831909 10 72033929 72202064 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448593 S 95 0 1 "" nsv526305 10 72056746 72075768 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702587 S 2026 1 0 "" nsv467368 10 72137950 72153364 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542683 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00774 nsv467369 10 72141778 72164164 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542684 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00787 nsv517130 10 72184617 72187212 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv678841,nssv672365,nssv677912,nssv697935,nssv673301,nssv672209,nssv692913,nssv667282,nssv675439,nssv662072,nssv692865,nssv653631,nssv678135,nssv669445,nssv675079,nssv688462,nssv674155,nssv685509,nssv685722,nssv666989,nssv651807,nssv658964,nssv654662,nssv680694,nssv672170,nssv676353,nssv683853,nssv683877,nssv677718,nssv662459,nssv659491,nssv652163,nssv680955,nssv657066,nssv677568,nssv670949,nssv685476,nssv675222,nssv681073,nssv670432,nssv659324,nssv692251,nssv692843,nssv667557,nssv691447,nssv668717,nssv656995,nssv672614,nssv676678,nssv685863,nssv681820,nssv689059,nssv661134,nssv685658,nssv671084,nssv692795,nssv683180,nssv660168,nssv674893 M 2026 58 1 "" nsv524058 10 72187212 72208804 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699924 S 2026 0 1 "" nsv515748 10 72197459 72197523 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv677169,nssv664667,nssv673018 M 2026 0 3 "" nsv517453 10 72264168 72296553 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv652060,nssv663845,nssv695667,nssv663020,nssv656561,nssv675557,nssv688367,nssv685263,nssv697099,nssv695575 M 2026 1 9 "" nsv526539 10 72269503 72301210 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702853 S 2026 1 0 "" nsv520868 10 72323644 72323767 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697658 S 2026 0 1 "" nsv25283 10 72348497 72348682 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43861 M 24 "" nsv526228 10 72350381 72351371 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702494 S 2026 1 0 "" nsv526481 10 72525236 72550518 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702790 S 2026 0 1 "" nsv523819 10 72527421 72529882 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699650 S 2026 0 1 "" nsv7077 10 72536112 72554075 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8810 S 9 0 1 "" NA12156 nsv528622 10 72661101 72661391 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705252 S 2026 0 1 "" nsv25434 10 72726469 72726518 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv44012 M 24 "" nsv467371 10 72732054 72770272 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542685 S 1557 1 0 "" 1782681092_A nsv7088 10 72852590 72884967 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5296 S 9 1 0 "" NA19129 dgv298e1 10 72907909 72956161 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv15982,esv1171,esv1307 M 271 0 0 "" NA19142 nsv523021 10 72910079 73015070 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698700 S 2026 1 0 "" nsv24403 10 72926588 72926707 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv42981 M 24 "" nsv524906 10 72950705 72955467 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700917 S 2026 0 1 "" nsv524489 10 72962430 72962794 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700427 S 2026 0 1 "" nsv7099 10 72978621 73012765 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv947,nssv8811 M 9 2 0 "" NA12156,NA19240 nsv467373 10 72982383 72997827 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542687 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00884 nsv467374 10 72989577 73005048 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542688 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00994 nsv818774 10 72992635 72998012 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417240 S 112 0 1 "" NA18577 nsv467375 10 72992635 73004416 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542689 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00857 nsv831910 10 73065321 73272986 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448594,nssv1448596 M 95 0 2 "" nsv467376 10 73293283 73335657 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542690 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00662 nsv508591 10 73300743 73360600 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622700 S 4 0 1 "" NA18994 nsv524610 10 73323873 73333278 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700571 S 2026 0 1 "" nsv7110 10 73408382 73441835 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2846 S 9 1 0 "" NA18555 nsv7204 10 73467464 73503032 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5297 S 9 0 0 "" NA19129 nsv515889 10 73502585 73507426 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv665162,nssv683854 M 2026 0 2 "" nsv522541 10 73502585 73515890 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705920 S 2026 0 1 "" nsv442192 10 73532154 73535907 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv508592 10 73594038 73656928 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622703 S 4 0 1 "" NA18994 dgv299e1 10 74105644 74277126 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv9093,esv200,esv223 M 271 0 0 "" NA19132 nsv7121 10 74287804 74319736 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10764 S 9 1 0 "" NA18956 nsv528473 10 74341617 74479602 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705076 S 2026 1 0 "" nsv527219 10 74478051 74564381 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703619 S 2026 0 1 "" nsv7132 10 74570596 74610248 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8812 S 9 0 1 "" NA12156 nsv831911 10 74743644 74913210 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448597 S 95 0 1 "" nsv7143 10 75035036 75070025 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5298 S 9 0 1 "" NA19129 nsv25103 10 75043796 75051193 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43681 M 24 "" nsv831912 10 75079115 75270209 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448598 S 95 1 0 "" nsv8688 10 75096530 75127616 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24353,nssv19285,nssv21987 M 31 0 3 Samples from several populations that are part of the HapMap project. "" NA18980,NA19132,NA19221 dgv46n21 10 75219922 75363701 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv517549,nsv524937 M 2026 0 9 "" nsv7154 10 75290471 75324175 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv948 S 9 1 0 "" NA19240 nsv521018 10 75343107 75375983 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697738 S 2026 1 0 "" nsv25246 10 75439528 75439841 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43824 M 24 "" nsv515824 10 75593452 76129675 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705859,nssv678770,nssv671658,nssv706095,nssv697596,nssv695800,nssv685614,nssv698293,nssv664889,nssv693893,nssv692774,nssv678982 M 2026 1 11 "" nsv507561 10 75644716 75650716 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623205 S 4 1 0 "" NA18994 dgv112n27 10 75917111 76043910 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv467378,nsv467379 M 1557 0 2 "" NINDS_145,NINDS_147 nsv7165 10 75924200 75953342 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10765 S 9 1 0 "" NA18956 nsv509359 10 76174946 76250373 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623691 S 4 1 0 "" NA18994 nsv7176 10 76293704 76338694 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8813 S 9 0 1 "" NA12156 nsv7188 10 76475109 76507128 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5299 S 9 1 0 "" NA19129 nsv7199 10 76507346 76542084 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv949 S 9 1 0 "" NA19240 nsv518639 10 76512931 76537905 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696088 S 2026 0 1 "" nsv516793 10 76524570 76537905 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv670904,nssv655852 M 2026 2 0 "" nsv831913 10 76531029 76691501 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448599 S 95 0 1 "" nsv520500 10 76543612 76561102 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv671887,nssv690672 M 2026 0 2 "" nsv7210 10 76688739 76707766 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8814 S 9 1 0 "" NA12156 nsv7221 10 76789974 76823102 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5300 S 9 1 0 "" NA19129 dgv300e1 10 76904943 77122607 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv7845,essv20385,essv12623,essv23601 M 271 0 0 "" NA10830,NA12006,NA18500,NA18558 dgv301e1 10 76904943 77440455 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv682,esv544 M 271 "" nsv831914 10 77020205 77190752 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448607,nssv1448601,nssv1448604,nssv1448608,nssv1448600,nssv1448603,nssv1448602,nssv1448605 M 95 8 0 "" nsv507562 10 77027206 77033206 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620630 S 4 1 0 "" NA15510 nsv7232 10 77061384 77094839 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv950 S 9 1 0 "" NA19240 essv17709 10 77090565 77440455 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12872 essv19319 10 77206052 77406628 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12872 nsv8689 10 77213686 77372629 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17381 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA12872 esv34687 10 77225497 77406628 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6979049,essv6979048,essv6979047,essv6986781,essv6986782 M 771 1 0 "" NA12872 esv2750632 10 77476908 77488640 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99805 S 51 0 1 "" 22086 esv33762 10 77506314 77507039 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100003 S 51 1 0 "" 22086 esv32829 10 77520974 77537175 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93184 S 51 1 0 "" 22170 nsv519640 10 77592125 77612829 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696966 S 2026 1 0 "" nsv524107 10 77597562 77600442 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699985 S 2026 0 1 "" nsv526459 10 77597562 77600442 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702762 S 2026 1 0 "" nsv831916 10 77812101 78010498 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448609 S 95 1 0 "" nsv7243 10 77912721 77939927 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1901,nssv8815,nssv3884 M 9 0 3 "" NA12156,NA12878,NA18555 nsv508594 10 77914325 77951255 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620112,nssv622708 M 4 0 2 "" NA15510,NA18994 esv33864 10 77917922 77928698 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100835,essv100982,essv94064,essv93126,essv95302,essv95896,essv99106,essv92749,essv99763,essv93326,essv99571,essv94973,essv92601,essv97631,essv100624,essv100390,essv94203 M 51 17 0 "" 21656,21693,21802,21863,21872,21911,21938,21944,22086,22170,22217,22231,22233,22278,22298,22300,22394 nsv442585 10 77927067 77930591 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv518212 10 77938865 77942255 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695636 S 2026 0 1 "" nsv507563 10 77939632 77945632 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619181 S 4 1 0 "" NA10860 nsv7254 10 78006929 78027568 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1902 S 9 0 1 "" NA18555 esv32707 10 78027056 78028809 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99757 S 51 0 1 "" 22086 esv33543 10 78062357 78065579 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100031 S 51 1 0 "" 22086 nsv831917 10 78080901 78204770 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448610 S 95 0 1 "" nsv831918 10 78133256 78326019 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448612,nssv1448611 M 95 2 0 "" nsv508595 10 78210546 78272380 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617380 S 4 0 1 "" CHM esv33418 10 78221544 78223751 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100059 S 51 0 1 "" 22086 nsv24056 10 78224919 78228589 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv42634 M 24 "" esv33271 10 78234114 78236210 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99793 S 51 0 1 "" 22086 nsv7265 10 78447282 78491947 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8816 S 9 0 1 "" NA12156 nsv24354 10 78470918 78471236 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv42932 M 24 "" nsv831919 10 78721811 78899964 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448613 S 95 0 1 "" essv11507 10 78781397 78996345 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19173 dgv302e1 10 78781397 79263477 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv510,esv717 M 271 "" nsv8690 10 78782756 78785132 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22904 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18860 nsv7276 10 78834899 78840778 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8817 S 9 0 1 "" NA12156 nsv8692 10 78841676 78844758 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19957 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA11830 nsv7287 10 78865214 78910212 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8818 S 9 0 1 "" NA12156 esv33067 10 78904739 78905219 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98545 S 51 0 1 "" 22085 dgv303e1 10 78988070 79263477 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv7734,essv7462 M 271 0 0 "" NA18633 nsv510230 10 79017550 79023550 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618331,nssv622271 M 4 0 2 "" CHM,NA10860 esv34251 10 79039280 79263477 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6979806,essv6986951,essv6979805,essv6979807,essv6990410 M 771 1 0 "" NA18633 nsv7299 10 79176254 79214917 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10766,nssv8819 M 9 2 0 "" NA12156,NA18956 nsv8693 10 79206191 79209280 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19548 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18564 nsv7310 10 79392747 79437471 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8820 S 9 0 1 "" NA12156 nsv7321 10 79414124 79422996 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9934 S 9 1 0 "" NA18507 nsv7205 10 79422629 79441411 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv951 S 9 0 0 "" NA19240 nsv437689 10 79774647 79784171 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467570 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19208 nsv467384 10 79779127 80766595 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542694 S 1557 1 0 "" 1780862456_A nsv831920 10 79908488 80159580 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448614 S 95 0 1 "" dgv113n27 10 79937005 79984306 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv467386,nsv467385 M 1557 0 2 "" HGDP00788,HGDP01075 nsv469706 10 80084776 80241593 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649727 M 265 0 16 Samples from several populations that are part of the HapMap project. "" nsv517525 10 80199208 80208515 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698006,nssv652274,nssv689964 M 2026 0 3 "" nsv7332 10 80225848 80270069 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1904 S 9 0 1 "" NA18555 nsv525000 10 80379684 80380491 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701033 S 2026 0 1 "" nsv7343 10 80385008 80448772 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3886,nssv10767 M 9 2 0 "" NA12878,NA18956 nsv507564 10 80467634 80473634 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623215 S 4 1 0 "" NA18994 nsv516458 10 80470952 80472884 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv668530,nssv681244 M 2026 0 2 "" nsv469807 10 80472833 80642432 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649828 M 265 0 5 Samples from several populations that are part of the HapMap project. "" nsv25450 10 80595726 80595726 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv44028 M 24 "" nsv831921 10 80622265 80746783 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448619,nssv1448615,nssv1448616,nssv1448618 M 95 0 4 "" esv33105 10 80673820 80674857 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv94923,essv97992 M 51 0 2 "" 22231,22259 nsv521285 10 80730323 80744822 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697887 S 2026 0 1 "" nsv525995 10 80735207 80739419 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702220 S 2026 0 1 "" nsv523745 10 80735207 80744822 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699561 S 2026 0 1 "" nsv467389 10 80806021 80848384 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542697 S 1557 0 1 "" NINDS_49 nsv7206 10 80930678 81971612 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10768,nssv952,nssv6403 M 9 0 0 "" NA12156,NA18956,NA19240 essv24085 10 80945468 81231464 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA10859 dgv304e1 10 80945468 81810835 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv20301,essv11218,essv22041,essv5587,essv20367,essv2196,essv18749,essv22300,essv22204,essv11541,esv508,essv20967,esv865,essv17118,essv20649 M 271 0 0 "" NA06985,NA10830,NA12044,NA12144,NA12154,NA12801,NA12874,NA12892,NA18529,NA18960,NA19171,NA19173,NA19204 nsv8694 10 80982308 81043875 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24379 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19221 nsv442586 10 81053880 81055405 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv8695 10 81058203 81103131 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19987,nssv21133 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA11830,NA18504 dgv305e1 10 81078095 81231464 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv15059,essv16796,essv23552 M 271 0 0 "" NA06993,NA18872,NA19129 dgv306e1 10 81078095 81553432 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv5467,essv22461,essv24894,essv21168,essv4951,essv22492,essv10691,essv19950,essv23885,essv777,essv20553,essv18257,essv3807,essv13536 M 271 0 0 "" NA07000,NA07056,NA10846,NA11830,NA11882,NA12761,NA12813,NA12814,NA18632,NA18637,NA18855,NA18943,NA18956,NA19160 nsv8696 10 81129619 81131391 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19629,nssv21884,nssv19293,nssv18212 M 31 4 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA12740,NA18517 nsv8697 10 81139825 81175852 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17599,nssv19066,nssv19727,nssv20198,nssv22403,nssv18534,nssv19324,nssv24405 M 31 0 8 Samples from several populations that are part of the HapMap project. "" NA10839,NA12155,NA18552,NA18563,NA18572,NA18972,NA18975,NA19221 nsv8698 10 81211535 81213143 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19040 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18853 nsv8699 10 81214569 81242251 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21492,nssv20017 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA11830,NA18502 nsv508596 10 81228718 81548738 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622712 S 4 0 1 "" NA18994 nsv8700 10 81380568 81432957 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19787,nssv21193,nssv21163,nssv21522,nssv20047 M 31 1 4 Samples from several populations that are part of the HapMap project. "" NA11830,NA18502,NA18504,NA18563 essv4147 10 81418250 81553432 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18555 nsv469639 10 81422753 81589260 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649566 M 265 0 14 Samples from several populations that are part of the HapMap project. "" nsv471668 10 81422754 81589260 CNV Gain Sharp et al 2005 15918152 BAC_aCGH,FISH Eichler Segmental Duplication BAC array nssv549767,nssv549762,nssv549766,nssv549779,nssv549765,nssv549776,nssv549778,nssv549764,nssv549760,nssv549772,nssv549761,nssv549769,nssv549763,nssv549768,nssv549777,nssv549771,nssv549773,nssv549770,nssv549774,nssv549775 M 48 20 0 "" JK1051,JK1058,JK1688,JK776,NA10469,NA10472,NA10473,NA10492,NA10493,NA10494,NA10495,NA11523,NA15724,NA15730,NA15733,NA17016,NA17017,NA17020,NA17058,P86GA nsv8701 10 81449818 81451590 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19659,nssv18242,nssv19323,nssv21914 M 31 4 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA12740,NA18517 nsv8703 10 81460023 81496028 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19126,nssv20228,nssv17812,nssv24431,nssv19354,nssv21944,nssv17629,nssv18564 M 31 0 8 Samples from several populations that are part of the HapMap project. "" NA10839,NA12155,NA18517,NA18552,NA18572,NA18942,NA18975,NA19221 nsv442587 10 81475459 81486935 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv8704 10 81531733 81533312 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19070 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18853 nsv8705 10 81534707 81589493 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19619,nssv19353,nssv19689,nssv22017,nssv20107,nssv18272 M 31 3 3 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA11830,NA12740,NA19132,NA19173 nsv442193 10 81552167 81587759 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv8706 10 81621713 81626341 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19817,nssv21974 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18517,NA18563 esv33075 10 81631003 81644371 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98157,essv95595 M 51 0 2 "" 21772,21841 nsv519730 10 81631178 81650335 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697016 S 2026 0 1 "" nsv467391 10 81631178 81729900 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542698 S 1557 1 0 "" 1782681287_A nsv8707 10 81662046 81669858 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21552,nssv19847,nssv17659,nssv18594,nssv20137,nssv21631,nssv22933,nssv17441,nssv21223,nssv19315,nssv19384,nssv17705,nssv17530,nssv22047 M 31 0 14 Samples from several populations that are part of the HapMap project. "" NA10839,NA10847,NA11830,NA12802,NA12872,NA18502,NA18504,NA18563,NA18572,NA18860,NA18975,NA18980,NA19132,NA19240 nsv831922 10 81670761 81824435 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448620 S 95 0 1 "" nsv25141 10 81685817 81685971 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43719 M 24 "" nsv520754 10 81705718 81729900 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv675017,nssv685791,nssv703954 M 2026 0 3 "" nsv528920 10 81738688 81784143 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705608 S 2026 1 0 "" nsv525757 10 81757368 81784143 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701925 S 2026 1 0 "" nsv8708 10 81770662 81784048 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19383 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA07048 essv24107 10 81772720 81779567 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA07048 esv33976 10 81778421 81779313 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97954 S 51 1 0 "" 21837 nsv527602 10 82044853 82052641 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704064 S 2026 0 1 "" nsv520763 10 82052641 82098590 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697597 S 2026 1 0 "" nsv831923 10 82072930 82259691 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448621 S 95 0 1 "" dgv47n21 10 82126644 82149519 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv525264,nsv519314 M 2026 4 0 "" nsv831924 10 82145598 82323175 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448622 S 95 0 1 "" nsv524518 10 82149519 82224567 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700463 S 2026 0 1 "" nsv469837 10 82156730 82305270 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649858 M 265 0 16 Samples from several populations that are part of the HapMap project. "" nsv7354 10 82263581 82308802 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8822 S 9 0 1 "" NA12156 nsv469860 10 82383413 82539916 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649881 M 265 18 14 Samples from several populations that are part of the HapMap project. "" esv2750975 10 82463000 82558664 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6986147,essv6988521,essv6982332,essv6982333 M 771 1 0 "" BEC_424 nsv8709 10 82466426 82478541 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19455 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18537 nsv7365 10 82500792 82534694 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8823 S 9 1 0 "" NA12156 nsv8710 10 82607171 82850489 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20167 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA11830 nsv523640 10 82613965 82617594 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699441 S 2026 0 1 "" nsv518276 10 82694875 82696097 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694221 S 2026 1 0 "" dgv48n21 10 82760687 82762097 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv521679,nsv528042 M 2026 0 2 "" nsv517526 10 82868468 82904009 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv658554,nssv670382,nssv673631,nssv663536,nssv666091,nssv661347,nssv672853,nssv673663,nssv691691,nssv653090,nssv661098,nssv670931,nssv667045,nssv663144,nssv680446,nssv686973,nssv674801,nssv678313,nssv668485,nssv673019,nssv683703,nssv672401,nssv663038,nssv689728,nssv658450,nssv695839,nssv678565,nssv681353,nssv681428,nssv652276,nssv691180,nssv675690,nssv687573,nssv670550,nssv678983,nssv669637,nssv681475,nssv674115,nssv680183,nssv670979,nssv676140,nssv684004,nssv652739,nssv662483,nssv677050,nssv688569,nssv683428,nssv669827,nssv683987,nssv680641,nssv662242,nssv669466,nssv690544,nssv675591,nssv682920,nssv668893,nssv654603,nssv660117,nssv662959 M 2026 0 59 "" dgv114n27 10 82869699 82875955 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv467397,nsv467393,nsv467392,nsv467396 M 1557 0 4 "" 1780862160_A,HGDP00003,HGDP00027,HGDP00619 nsv818775 10 82869699 82875955 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418013 S 112 0 1 "" NA07345 nsv518030 10 82869699 82931735 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695440 S 2026 0 1 "" nsv442195 10 82871310 82879763 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv526447 10 82931735 82935530 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702750 S 2026 0 1 "" nsv7376 10 82946002 82981023 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv953 S 9 1 0 "" NA19240 nsv524565 10 82969046 82972161 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700520 S 2026 0 1 "" nsv527269 10 83109190 83124414 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703678 S 2026 0 1 "" nsv7387 10 83172398 83207113 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2847 S 9 1 0 "" NA18555 nsv527089 10 83174754 83178748 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703468 S 2026 0 1 "" dgv115n27 10 83428407 83509687 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv467399,nsv467400 M 1557 0 2 "" 1780862042_A,1782681093_A nsv523010 10 83469708 83472879 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698684 S 2026 0 1 "" nsv831925 10 83521211 83688587 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448623 S 95 1 0 "" nsv467401 10 83552892 83578691 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542707 S 1557 0 1 "" NINDS_241 nsv507565 10 83676567 83682567 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620637 S 4 1 0 "" NA15510 nsv831927 10 83800809 83947617 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448624 S 95 1 0 "" nsv7398 10 83828465 83861741 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8824 S 9 1 0 "" NA12156 nsv527301 10 83849355 83855744 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703719 S 2026 0 1 "" esv33611 10 83873764 83878999 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98174,essv94267 M 51 0 2 "" 21772,22394 nsv442196 10 83874641 83878647 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv516182 10 83874874 83878323 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv670796,nssv682749,nssv671805,nssv670531,nssv671166,nssv676569,nssv656086,nssv672697,nssv666666,nssv690545,nssv688390,nssv676542,nssv690596 M 2026 0 13 "" nsv518939 10 83906404 83911720 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696406 S 2026 0 1 "" nsv516167 10 83983384 84042202 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv666584,nssv692576 M 2026 0 2 "" nsv7410 10 84015007 84046192 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10769 S 9 1 0 "" NA18956 dgv307e1 10 84034612 84048907 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1179,esv1051,essv5643 M 271 0 0 "" NA18579 nsv24927 10 84060686 84060766 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43505 M 24 "" nsv517782 10 84113905 84127853 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv676290,nssv653237 M 2026 0 2 "" nsv527270 10 84124349 84170185 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703679 S 2026 0 1 "" nsv467402 10 84132250 84200736 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542708 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00910 nsv526120 10 84166922 84170185 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702370 S 2026 0 1 "" esv35106 10 84379583 84427200 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6979297,essv6979296,essv6979295 M 771 1 0 "" NA18524 dgv308e1 10 84390694 84427173 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv936,essv18884,esv1089 M 271 0 0 "" NA07029 nsv24044 10 84390753 84390901 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv42622 M 24 "" nsv467403 10 84391488 84420068 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542709 S 1557 1 0 "" 1780846321_A nsv517505 10 84391488 84423371 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv676354,nssv681935,nssv666962,nssv705209,nssv691043,nssv657711,nssv685937,nssv678746,nssv665512,nssv656036,nssv657216,nssv662706,nssv652212,nssv700663 M 2026 13 1 "" nsv8711 10 84396460 84421703 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18302 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA07029 nsv442197 10 84400707 84421820 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" essv20465 10 84401882 84427173 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA06994 nsv818776 10 84410253 84420068 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417053,nssv1417054 M 112 2 0 "" NA06994,NA07029 nsv516267 10 84527347 84555831 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv670980,nssv668486,nssv667194,nssv675592 M 2026 0 4 "" esv34368 10 84528724 84608631 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6979766,essv6979765,essv6979764,essv6988242 M 771 0 1 "" NA18623 dgv309e1 10 84561902 84608631 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv4508,esv1188,esv1290 M 271 0 0 "" NA18623 nsv527348 10 84591433 84594362 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703775 S 2026 0 1 "" nsv516930 10 84678732 84706503 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv653477,nssv659520,nssv670642,nssv659466,nssv662960,nssv690093,nssv680931,nssv689032,nssv686331,nssv675080,nssv675558,nssv671635,nssv658204,nssv658865,nssv667262,nssv656667,nssv679919,nssv663298,nssv676955,nssv681732,nssv673430,nssv660925,nssv691842,nssv690385,nssv660881,nssv672041,nssv685551 M 2026 0 27 "" nsv442198 10 84702878 84707152 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv818779 10 84703098 84706503 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418176 S 112 0 1 "" NA19144 nsv831928 10 84728606 84908171 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448625 S 95 1 0 "" nsv510231 10 84777748 84783748 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621460 S 4 0 1 "" NA15510 nsv525449 10 84890130 84908309 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701577 S 2026 0 1 "" dgv9n68 10 84958285 85176686 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH nsv831929,nsv831930 M 95 4 0 "" nsv509360 10 84958757 84974534 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618081 S 4 1 0 "" CHM nsv507566 10 84963388 84969388 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619184 S 4 1 0 "" NA10860 nsv7421 10 84966965 84993217 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2848 S 9 1 0 "" NA18555 nsv24970 10 85119332 85119555 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43548 M 24 "" nsv467405 10 85183926 85211638 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542710 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00991 nsv24708 10 85365906 85366124 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43286 M 24 "" nsv831931 10 85388710 85575589 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448632 S 95 1 0 "" nsv7432 10 85471902 85505594 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8825 S 9 1 0 "" NA12156 nsv508597 10 85498051 85560424 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622713 S 4 0 1 "" NA18994 nsv525403 10 85499176 85499841 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701526 S 2026 0 1 "" nsv528995 10 85603815 85611078 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705698 S 2026 1 0 "" nsv24919 10 85616213 85616419 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43497 M 24 "" nsv25276 10 85739596 85739596 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43854 M 24 "" nsv527522 10 86001909 86022733 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703976 S 2026 0 1 "" nsv523733 10 86016182 86022733 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699549 S 2026 0 1 "" nsv522443 10 86101607 86125291 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705801 S 2026 1 0 "" nsv831932 10 86243845 86397752 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448633 S 95 0 1 "" nsv516506 10 86303407 86305424 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv668752,nssv700046,nssv681054 M 2026 0 3 "" nsv519726 10 86404652 86473872 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697014 S 2026 1 0 "" nsv467407 10 86429829 86452994 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542712 S 1557 0 1 "" 1780854340_A nsv24820 10 86466045 86467342 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43398 M 24 "" nsv7443 10 86532247 86554720 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9800 S 9 1 0 "" NA18507 nsv7454 10 86609957 86642933 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv954 S 9 1 0 "" NA19240 nsv442199 10 86728739 86737527 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv831933 10 86781545 86972730 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448634 S 95 0 1 "" nsv831934 10 86858799 87060248 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448635 S 95 0 1 "" nsv7465 10 86928358 86962278 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8826 S 9 1 0 "" NA12156 nsv7475 10 87274601 87304940 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10770 S 9 1 0 "" NA18956 nsv7476 10 87290081 87334952 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8827 S 9 0 1 "" NA12156 nsv522357 10 87420101 87424453 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695138 S 2026 0 1 "" nsv519532 10 87421528 87424453 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv656722,nssv660099,nssv676030 M 2026 0 3 "" nsv831935 10 87510785 87691231 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448636 S 95 1 0 "" nsv442200 10 87791026 87798355 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv831936 10 87856824 88047369 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448637 S 95 0 1 "" nsv525816 10 87872777 87872896 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702002 S 2026 0 1 "" nsv7477 10 87882932 87916829 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3887 S 9 1 0 "" NA12878 nsv515541 10 87944582 87949029 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv664668,nssv660715,nssv680549,nssv651831,nssv659865,nssv655464,nssv682014,nssv677979,nssv693182 M 2026 0 9 "" nsv831938 10 87966385 88108163 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448638 S 95 1 0 "" nsv520914 10 87986431 88051783 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697685 S 2026 0 1 "" nsv525817 10 88091347 88108932 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702003 S 2026 0 1 "" nsv7478 10 88213731 88247530 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8828 S 9 1 0 "" NA12156 nsv509361 10 88238399 88255398 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621068,nssv619717,nssv623712 M 4 3 0 "" NA10860,NA15510,NA18994 nsv7480 10 88250167 88260367 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5301 S 9 1 0 "" NA19129 nsv24282 10 88313553 88318407 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv42860 M 24 "" nsv518155 10 88326259 88330991 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695576 S 2026 0 1 "" nsv467411 10 88380217 88430546 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542713 S 1557 0 1 "" NINDS_173 dgv116n27 10 88403292 88432420 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv467412,nsv467413 M 1557 0 2 "" HGDP00546,HGDP00619 nsv524269 10 88404192 88430546 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700167 S 2026 0 1 "" nsv517139 10 88422308 88432420 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv666641,nssv693129,nssv678783,nssv663937,nssv653899,nssv683272,nssv688902,nssv651768,nssv680811,nssv652651,nssv673076,nssv693395,nssv657230,nssv667338,nssv673199,nssv657217,nssv653385,nssv662484,nssv688478,nssv675344,nssv693736,nssv686634,nssv671636,nssv674996,nssv682739,nssv690122,nssv691152,nssv654462,nssv670706,nssv661362,nssv674383,nssv663207,nssv670505,nssv654637,nssv663598,nssv655518,nssv658668,nssv667592,nssv680532,nssv659704,nssv692984,nssv657489,nssv677145,nssv674894,nssv669130,nssv673598,nssv693054,nssv692142,nssv655661,nssv684312,nssv664303,nssv675895,nssv657129,nssv658590,nssv675998,nssv691865,nssv663811,nssv667243,nssv668123,nssv659173,nssv652114,nssv654278,nssv668469,nssv683734,nssv679164,nssv653848,nssv684520,nssv660926,nssv663513,nssv691415,nssv654859,nssv680550,nssv665774,nssv665661,nssv663275,nssv661216,nssv683221,nssv680623,nssv656429,nssv688988,nssv658220,nssv673818,nssv662744,nssv656000,nssv660750,nssv659975,nssv665326,nssv656468,nssv689499,nssv692419,nssv692702,nssv687145,nssv681821,nssv655255,nssv675756,nssv658343,nssv669491,nssv665760,nssv676791,nssv661738,nssv672673,nssv680991,nssv653943,nssv674116,nssv691996,nssv679940,nssv673020,nssv682873,nssv681991,nssv651738,nssv683234,nssv659216,nssv663720,nssv689567,nssv668093,nssv665575,nssv655783,nssv672915,nssv669993,nssv666092,nssv677554,nssv665078,nssv687999,nssv682792,nssv674230,nssv657524,nssv686891,nssv686177,nssv679252,nssv670433,nssv662707,nssv681813,nssv681458,nssv668301,nssv667195,nssv666470,nssv672042,nssv659351,nssv675303,nssv667889,nssv667461,nssv679516,nssv675362,nssv662291,nssv660207,nssv680207,nssv681710,nssv658451,nssv671427,nssv651903,nssv673556,nssv692929,nssv662792,nssv654339,nssv653132,nssv658910,nssv653972,nssv657977,nssv666621,nssv665428,nssv680642,nssv680008,nssv653017,nssv683611,nssv656741,nssv667719,nssv699899,nssv672887,nssv678163,nssv652129,nssv685365,nssv666585,nssv660155,nssv676074,nssv691802,nssv670339,nssv661135,nssv690336,nssv688951,nssv669956,nssv676355,nssv662877,nssv688517,nssv684610,nssv666744,nssv686700,nssv658849,nssv657830,nssv664000,nssv684880,nssv660051,nssv679332,nssv662073,nssv681849,nssv656320,nssv663752,nssv661397,nssv687514,nssv688631,nssv689353,nssv681636,nssv664100,nssv683256,nssv670060,nssv691745,nssv678089,nssv685394,nssv687316,nssv696891,nssv669700,nssv692369,nssv676442,nssv688041,nssv655130,nssv663353,nssv667117,nssv690624,nssv677784,nssv663181,nssv678449 M 2026 3 217 "" nsv520811 10 88430387 88445222 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697625 S 2026 0 1 "" nsv519805 10 88445859 88451679 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv675291,nssv658798 M 2026 0 2 "" dgv310e1 10 88505038 89299742 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv792,essv11682,essv21226,essv22468,essv13613,essv22030,esv592,essv11178,essv22233,essv20795,essv20396,essv16894,essv18750,essv11546,essv11251,essv20968,essv4989,essv4781,esv709,essv5360,essv5542,essv14120,essv16270,essv9833,essv15013,essv17183,essv16734,essv21513,essv24846,essv3811,essv21348,essv20640,essv7032,essv2215,essv13529,essv23622,essv22314,essv24051 M 271 0 0 "" NA06985,NA07000,NA10830,NA10859,NA11830,NA12006,NA12044,NA12146,NA12154,NA12761,NA12801,NA12873,NA12874,NA12878,NA12892,NA18529,NA18563,NA18612,NA18620,NA18637,NA18861,NA18863,NA18870,NA18872,NA18943,NA18956,NA18960,NA19127,NA19154,NA19160,NA19161,NA19171,NA19173,NA19204,NA19205,NA19211 esv33714 10 88557449 88565416 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99489 S 51 0 1 "" 22335 nsv7481 10 88576908 88598780 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8829 S 9 0 1 "" NA12156 dgv311e1 10 88616596 88898563 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv22863,essv15118 M 271 0 0 "" NA12760,NA19129 dgv312e1 10 88616596 89105572 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1532,essv2980,essv20188,essv10422,essv17514,essv6166,essv17842,essv24415,essv15370,essv15882,essv7182,essv17924,essv19425,essv12197,essv24659,essv24298,essv18925,essv6602,essv17435,essv20288,essv23447,essv386,essv21256 M 271 0 0 "" NA10831,NA10854,NA10855,NA10856,NA11829,NA11832,NA11840,NA12003,NA12005,NA12043,NA12144,NA12707,NA12762,NA18532,NA18547,NA18621,NA18862,NA18971,NA18980,NA18981,NA19101,NA19222,NA19223 nsv517487 10 88649027 88723172 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696782,nssv684561,nssv654899,nssv683797,nssv652165,nssv672583,nssv653325,nssv660010,nssv654749,nssv668658,nssv696694,nssv665892,nssv657453 M 2026 5 8 "" nsv7482 10 88660303 88691580 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6405 S 9 1 0 "" NA12156 esv33376 10 88706078 88714691 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99521 S 51 0 1 "" 22335 essv23924 10 88715605 88898563 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12814 dgv313e1 10 88715605 89105572 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv12761,essv16522,essv1827,essv282,essv8472,essv16028,essv19162,essv11993,essv83,essv16450,essv18174,essv1264,essv1787,essv10781,essv22598,essv13796,essv4576,essv590,essv1392,essv4916,essv21067,essv19749,essv15220,essv12539,essv10914,essv13682,essv2584,essv14738,essv4485,essv9234,essv4118,essv6698,essv10168,essv7795,essv21713,essv9038,essv1091,essv3879,essv12360,essv24757,essv20347,essv3204,essv6016,essv13082,essv10485,essv18616,essv12856,essv22998,essv5037,essv14351,essv11931,essv12682,essv14468,essv10568,essv12512,essv6303,essv4047,essv19220,essv2547,essv13466,essv24527,essv9333,essv23351,essv13890,essv23079,essv4394,essv15564,essv4626,essv24993,essv18102,essv8797,essv21374,essv19566,essv10819,essv22659,essv5741,essv15653,essv17699,essv9728,essv15789,essv17101,essv22147,essv8125,essv1431,essv22365,essv6781,essv3342,essv11855,essv4305,essv5123,essv1619,essv2879,essv21434,essv3771,essv2265,essv2644,essv15480,essv162,essv3108,essv10295,essv8754 M 271 0 0 "" NA06991,NA07348,NA07357,NA10835,NA10838,NA10839,NA10857,NA10860,NA11993,NA12057,NA12234,NA12236,NA12248,NA12717,NA12740,NA12750,NA12752,NA12802,NA12812,NA12864,NA12865,NA12872,NA12875,NA18500,NA18501,NA18502,NA18505,NA18506,NA18508,NA18515,NA18516,NA18517,NA18523,NA18524,NA18552,NA18555,NA18558,NA18561,NA18562,NA18571,NA18573,NA18576,NA18577,NA18593,NA18594,NA18603,NA18608,NA18609,NA18635,NA18852,NA18853,NA18854,NA18871,NA18912,NA18913,NA18914,NA18942,NA18944,NA18945,NA18953,NA18961,NA18964,NA18966,NA18967,NA18968,NA18969,NA18974,NA18976,NA18978,NA18990,NA18991,NA18994,NA18995,NA18997,NA18998,NA19003,NA19007,NA19092,NA19094,NA19098,NA19119,NA19120,NA19128,NA19130,NA19131,NA19132,NA19137,NA19138,NA19139,NA19153,NA19159,NA19172,NA19192,NA19194,NA19201,NA19206,NA19207,NA19209,NA19210,NA19221,NA19240 dgv314e1 10 88715605 89195346 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv7599,essv10050,essv11009,essv2006,essv17270 M 271 0 0 "" NA18503,NA18545,NA18949,NA19099,NA19143 nsv831939 10 88734014 88903991 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448642,nssv1448641,nssv1448639,nssv1448647,nssv1448644,nssv1448645,nssv1448643,nssv1448646 M 95 8 0 "" nsv8712 10 88747521 88777021 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19345,nssv19877,nssv19156 M 31 0 3 Samples from several populations that are part of the HapMap project. "" NA18552,NA18563,NA18980 nsv8714 10 88818864 88837392 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19907,nssv19485,nssv21661,nssv24457,nssv19444,nssv22077,nssv21582 M 31 0 7 Samples from several populations that are part of the HapMap project. "" NA10839,NA18502,NA18537,NA18563,NA19132,NA19221,NA19240 nsv8715 10 88859433 89018021 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19578,nssv22463,nssv21642,nssv17689,nssv19465,nssv24483,nssv17842,nssv22962,nssv18654,nssv21691,nssv17560,nssv19649,nssv17765,nssv19779,nssv19443,nssv19130,nssv21612,nssv19937,nssv20258,nssv19405,nssv19719,nssv22034,nssv20197,nssv21253,nssv18624,nssv19186,nssv18362,nssv19474,nssv17719,nssv19375,nssv17471,nssv22137,nssv19136,nssv18332,nssv22004,nssv19146,nssv24509 M 31 4 27 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10847,NA10863,NA11830,NA12155,NA12740,NA12802,NA12872,NA18502,NA18504,NA18517,NA18552,NA18563,NA18564,NA18572,NA18853,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19173,NA19221,NA19240 dgv315e1 10 88878227 89299742 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv21048,essv9195,essv15122,essv1026,essv22420,essv5464,essv10689,essv19907,essv18343,essv18316,essv20604 M 271 0 0 "" NA06991,NA07056,NA10846,NA10861,NA11994,NA12813,NA18632,NA18855,NA19005,NA19128,NA19129 dgv316e1 10 88886420 89195346 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv25042,essv23867,essv21942,essv20502,essv25057 M 271 0 0 "" NA07000,NA12801,NA12814,NA12874,NA12892 essv20231 10 88943287 89105572 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12144 nsv482147 10 88975185 88984713 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558508 S 1 1 0 "" KB1 nsv7483 10 88977030 89154814 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10771,nssv956,nssv5302 M 9 0 3 "" NA18956,NA19129,NA19240 essv7646 10 88987279 89274999 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18632 nsv7207 10 89053264 89150266 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9801 S 9 0 0 "" NA18507 nsv8716 10 89053660 89055378 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19160 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18853 nsv8717 10 89056683 89104819 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20227 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA11830 nsv442588 10 89060724 89084996 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv8718 10 89103532 89105804 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19473,nssv18392,nssv19809 M 31 3 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA12740 nsv482148 10 89107457 89120432 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558509 S 1 1 0 "" KB1 nsv8719 10 89132347 89180746 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17795,nssv19839,nssv17531,nssv18684,nssv21672,nssv19504,nssv22167,nssv19495,nssv20257,nssv17872,nssv21721,nssv19638,nssv19608,nssv24535,nssv22064,nssv19176,nssv21283,nssv17501,nssv19967,nssv22991 M 31 0 18 Samples from several populations that are part of the HapMap project. "" NA10839,NA10847,NA10863,NA11830,NA12740,NA12872,NA18502,NA18504,NA18517,NA18563,NA18564,NA18860,NA18942,NA18975,NA18980,NA19132,NA19221,NA19240 esv32793 10 89148083 89174470 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99294 S 51 1 0 "" 22275 nsv54 10 89160463 89177356 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv54 S 1 1 0 "" NA15510 nsv510993 10 89170895 89258474 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621646 S 4 0 0 "" NA15510 esv32576 10 89174470 89199792 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101555,essv97521,essv101125,essv93806,essv100839,essv101008,essv101422,essv97892,essv93028,essv95342,essv95816,essv94635,essv98950,essv92752,essv95953,essv93354,essv94927,essv92545,essv99244,essv97635,essv100603,essv99364,essv96346,essv94216 M 51 1 23 "" 21603,21616,21618,21634,21656,21693,21805,21837,21863,21872,21911,21932,21938,21944,22127,22170,22231,22233,22275,22278,22298,22335,22371,22394 nsv8720 10 89182051 89183719 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19190 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18853 nsv8721 10 89219426 89250487 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24561,nssv19525,nssv19216,nssv19555,nssv18714,nssv17779 M 31 0 5 Samples from several populations that are part of the HapMap project. "" NA18552,NA18572,NA18975,NA18980,NA19221 nsv508598 10 89270786 89367952 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622721 S 4 0 1 "" NA18994 nsv526518 10 89314643 89322124 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702828 S 2026 0 1 "" nsv525497 10 89326814 89329043 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701629 S 2026 0 1 "" nsv510994 10 89420421 89461303 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624352 S 4 0 0 "" NA18994 nsv507567 10 89445668 89451668 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620642 S 4 1 0 "" NA15510 nsv518233 10 89502819 89573982 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695662 S 2026 0 1 "" nsv24540 10 89573936 89573936 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43118 M 24 "" nsv831940 10 89801227 89979179 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448648 S 95 1 0 "" nsv467414 10 89996487 90032134 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542716 S 1557 0 1 "" 1780854255_A nsv24973 10 90324891 90325032 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43551 M 24 "" nsv831941 10 90400468 90577312 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448649 S 95 1 0 "" nsv24430 10 90444985 90445109 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43008 M 24 "" nsv7484 10 90547728 90589652 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10772,nssv6406 M 9 2 0 "" NA12156,NA18956 nsv831942 10 90554677 90720332 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448650,nssv1448653,nssv1448652 M 95 3 0 "" nsv831943 10 90654816 90855814 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448654 S 95 1 0 "" nsv831944 10 90812634 90956998 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448656,nssv1448657,nssv1448655 M 95 3 0 "" dgv49n21 10 90816232 90821971 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv525285,nsv527487 M 2026 0 2 "" dgv317e1 10 90825044 91007466 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv60,esv48,essv20041 M 271 0 0 "" NA07048 nsv517170 10 90921582 90965187 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv692398,nssv684853,nssv657831,nssv661099,nssv692274,nssv653917,nssv676141,nssv702059,nssv677841,nssv693846,nssv659795,nssv654687,nssv675923,nssv685752,nssv668343,nssv690546,nssv655274,nssv680735,nssv661974,nssv655166,nssv660821,nssv679820,nssv674947,nssv656996,nssv681592,nssv690697,nssv668262,nssv675363,nssv652502,nssv666963,nssv667490,nssv660882,nssv652521,nssv657884,nssv683480,nssv674924 M 2026 0 36 "" nsv8722 10 90929856 90947401 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19166,nssv22493,nssv19503 M 31 0 3 Samples from several populations that are part of the HapMap project. "" NA07048,NA18972,NA19007 nsv437127 10 90929983 90958083 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467008 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA07048 dgv7n64 10 90930338 90935788 CNV Loss Wang_et_al_2007 17921354 SNP_array nsv818780,nsv818781 M 112 0 4 "" NA12812,NA18609,NA18972,NA18978 dgv117n27 10 90930667 90935788 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv467419,nsv467421,nsv467420 M 1557 0 3 "" 1782681142_A,HGDP00669,HGDP01101 dgv118n27 10 90930667 90965187 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv467422,nsv467423 M 1557 0 2 "" HGDP00407,HGDP01399 nsv442201 10 90932947 90938070 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv523061 10 90967674 90967739 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698747 S 2026 1 0 "" nsv520796 10 90997450 91000459 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv675559,nssv689951,nssv693238,nssv681476 M 2026 0 4 "" nsv516481 10 91007343 91008500 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv668628,nssv687126,nssv659654,nssv687202 M 2026 0 4 "" nsv528603 10 91109624 91114009 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705229 S 2026 0 1 "" nsv527532 10 91358618 91361001 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703992 S 2026 0 1 "" nsv507568 10 91460561 91466561 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623235,nssv620645,nssv619193 M 4 3 0 "" NA10860,NA15510,NA18994 nsv467430 10 91671324 92287923 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542724 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01374 nsv7485 10 91677089 91685378 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv957 S 9 1 0 "" NA19240 nsv7486 10 91687530 91727027 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv958,nssv5303 M 9 2 0 "" NA19129,NA19240 nsv528860 10 91694792 91699103 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705540 S 2026 0 1 "" nsv519094 10 91759925 91917176 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696567 S 2026 1 0 "" nsv7487 10 91857013 91863529 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv959 S 9 1 0 "" NA19240 nsv507569 10 91857293 91863293 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623236 S 4 1 0 "" NA18994 nsv467431 10 91912363 91932199 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542725 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01232 esv2422237 10 91930522 92537538 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161280 S 181 1 0 "" ND01566 nsv442202 10 91988396 91992471 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv467432 10 92072230 92549888 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542726 S 1557 1 0 "" NINDS_59 nsv516743 10 92072995 92595099 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv670579,nssv681429 M 2026 2 0 "" nsv508599 10 92417511 92457695 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622731,nssv617381 M 4 0 2 "" CHM,NA18994 nsv831945 10 92580556 92783562 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448658 S 95 1 0 "" nsv507570 10 92785506 92791506 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623243 S 4 1 0 "" NA18994 nsv525712 10 92796452 92821419 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701874 S 2026 1 0 "" essv8570 10 92891080 92922917 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19130 nsv442203 10 92915179 92923075 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv24911 10 92959206 92959543 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43489 M 24 "" nsv7488 10 93146270 93179845 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2849 S 9 1 0 "" NA18555 nsv7208 10 93150603 93196355 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6407,nssv9260 M 9 0 0 "" NA12156,NA18517 nsv433413 10 93191127 93197951 CNV Gain Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463294 S 9 1 0 Samples from several populations that are part of the HapMap project. "" NA12156 esv33149 10 93193518 93201638 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv96359 S 51 0 1 "" 22371 nsv7489 10 93489806 93523207 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5305 S 9 1 0 "" NA19129 nsv7491 10 93616172 93661674 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6408 S 9 0 1 "" NA12156 nsv508600 10 94105005 94221897 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620125 S 4 0 1 "" NA15510 nsv7492 10 94105187 94128443 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1905 S 9 0 1 "" NA18555 nsv510232 10 94124547 94130547 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624195,nssv622275 M 4 0 2 "" NA10860,NA18994 nsv24401 10 94124595 94127633 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv42979 M 24 "" nsv442204 10 94153462 94160827 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv516471 10 94157067 94160831 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv660883,nssv668578 M 2026 0 2 "" nsv515937 10 94650113 94715488 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv679213,nssv705699,nssv669234,nssv665380 M 2026 4 0 "" nsv518124 10 94650113 94768263 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695542 S 2026 0 1 "" nsv522103 10 94650113 94800655 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694875 S 2026 1 0 "" nsv467434 10 94658504 94715488 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542727 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00150 nsv467435 10 94706293 94769530 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542728 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00766 nsv24948 10 94724328 94724328 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43526 M 24 "" nsv7493 10 94784268 94792017 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4624 S 9 0 1 "" NA19129 nsv525005 10 95012580 95013916 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701040 S 2026 0 1 "" nsv7494 10 95065857 95100861 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3888 S 9 1 0 "" NA12878 nsv24721 10 95088682 95097305 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43299 M 24 "" nsv507571 10 95144233 95150233 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619201,nssv620651,nssv617807 M 4 3 0 "" CHM,NA10860,NA15510 nsv522686 10 95430276 95461328 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv706096 S 2026 0 1 "" nsv7495 10 95671679 95736787 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10773,nssv8830 M 9 2 0 "" NA12156,NA18956 nsv831946 10 96045180 96216428 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448659 S 95 0 1 "" nsv517681 10 96333218 96377069 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv676679,nssv652833 M 2026 2 0 "" nsv522538 10 96395319 96537453 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705915 S 2026 0 1 "" nsv7496 10 96404798 96436667 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3889 S 9 1 0 "" NA12878 nsv516555 10 96524574 96537453 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv669131,nssv685574 M 2026 0 2 "" nsv523259 10 96524574 96683717 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698991 S 2026 1 0 "" nsv7497 10 96724250 96758557 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3890 S 9 1 0 "" NA12878 nsv467436 10 96795361 96852276 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542729 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00622 nsv7498 10 96847884 96871930 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6409 S 9 0 1 "" NA12156 nsv437691 10 96854795 96866686 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467572 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19202 nsv517863 10 96894047 96918692 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694174 S 2026 0 1 "" nsv524227 10 97314117 97318217 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700116 S 2026 0 1 "" nsv526180 10 97322185 97501027 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702442 S 2026 1 0 "" nsv526761 10 97426383 97428813 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703112 S 2026 0 1 "" nsv7499 10 97444260 97467501 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv960 S 9 1 0 "" NA19240 nsv7500 10 97536626 97569761 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1906 S 9 1 0 "" NA18555 nsv507572 10 97553156 97559156 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619205,nssv620655 M 4 2 0 "" NA10860,NA15510 nsv25405 10 97673016 97676562 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43983 M 24 "" nsv831947 10 97835156 98007915 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448661,nssv1448660 M 95 1 1 "" nsv831949 10 97917584 98135692 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448663 S 95 1 0 "" dgv29n17 10 97937031 97947314 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437128,nsv437129 M 60 0 2 "" NA10831,NA10846 nsv831950 10 98070962 98235424 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448664 S 95 1 0 "" nsv509362 10 98154683 98190804 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623736 S 4 1 0 "" NA18994 nsv509363 10 98330935 98427880 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623740 S 4 1 0 "" NA18994 nsv7502 10 98374693 98419495 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8831 S 9 0 1 "" NA12156 nsv25166 10 98379473 98379656 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43744 M 24 "" nsv7503 10 98398112 98428643 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5306 S 9 1 0 "" NA19129 nsv508601 10 98427880 98524311 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618957 S 4 0 1 "" NA10860 nsv7504 10 98551104 98558100 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8832 S 9 1 0 "" NA12156 nsv527351 10 98657519 98663797 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703780 S 2026 0 1 "" nsv831951 10 98707093 98751270 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448665 S 95 1 0 "" essv12626 10 98779953 98952462 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18500 nsv7505 10 98805835 98840597 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3891 S 9 1 0 "" NA12878 nsv7506 10 98892430 98930199 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6410 S 9 0 1 "" NA12156 nsv433513 10 98960654 98966913 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463394 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA18956 nsv831952 10 98988334 99135914 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448667,nssv1448666,nssv1448670,nssv1448669,nssv1448668 M 95 0 5 "" nsv7507 10 99021223 99060680 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6411 S 9 0 1 "" NA12156 nsv25080 10 99098282 99098607 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43658 M 24 "" dgv119n27 10 99105673 99163860 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv467437,nsv467438 M 1557 0 2 "" 1780862019_A,HGDP01060 nsv467440 10 99124774 99194781 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542733 S 1557 0 1 "" NINDS_22 nsv7508 10 99275365 99320491 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5307 S 9 0 1 "" NA19129 nsv7509 10 99307580 99336642 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3892 S 9 1 0 "" NA12878 nsv818782 10 99327562 99340118 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415984 S 112 0 1 "" NA12750 nsv519864 10 99468071 99476634 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697091 S 2026 0 1 "" nsv7510 10 99633130 99665140 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10775 S 9 1 0 "" NA18956 nsv509364 10 99634429 99686499 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619737 S 4 1 0 "" NA10860 nsv25263 10 99650207 99650270 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43841 M 24 "" nsv831953 10 99658014 99826839 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448671 S 95 1 0 "" essv17399 10 99824786 99841072 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18855 essv10706 10 99824786 99883943 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18508 nsv442205 10 99824936 99827390 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv831954 10 99922562 100111024 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448672,nssv1448674 M 95 0 2 "" nsv515723 10 100138166 100184819 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv683458,nssv679417,nssv668327,nssv701731,nssv664560,nssv697367,nssv705981 M 2026 0 7 "" nsv831955 10 100151884 100341805 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448675 S 95 1 0 "" nsv524427 10 100158362 100202364 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700354 S 2026 0 1 "" nsv831956 10 100233688 100388795 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448686,nssv1448682,nssv1448678,nssv1448676,nssv1448677,nssv1448679,nssv1448681,nssv1448680,nssv1448683,nssv1448687,nssv1448685,nssv1448689,nssv1448688,nssv1448690,nssv1448691,nssv1448692,nssv1448693 M 95 0 17 "" nsv517710 10 100237580 100256082 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705513,nssv703595,nssv668655,nssv690232,nssv652919,nssv705767 M 2026 5 1 "" nsv520353 10 100240176 100276037 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697368 S 2026 1 0 "" nsv7511 10 100245971 100283917 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8833 S 9 0 1 "" NA12156 nsv7209 10 100283176 100302543 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3894 S 9 0 0 "" NA12878 nsv831957 10 100582502 100767158 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448694 S 95 1 0 "" nsv507573 10 100617102 100623102 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623255 S 4 1 0 "" NA18994 nsv508602 10 100657415 100712881 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620135 S 4 0 1 "" NA15510 nsv7513 10 100661762 100714472 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9803,nssv3895,nssv5308,nssv9261 M 9 0 4 "" NA12878,NA18507,NA18517,NA19129 esv32597 10 100672444 100686782 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101454,essv93905,essv100943,essv98181,essv94799,essv94132,essv101287,essv96966,essv97916,essv95300,essv94641,essv99134,essv92801,essv99983,essv96013,essv93338,essv99680,essv92560,essv99245,essv97771,essv100534,essv100295,essv96367,essv94179 M 51 22 2 "" 21603,21634,21693,21772,21791,21802,21805,21817,21837,21872,21932,21938,21944,22086,22127,22170,22217,22233,22275,22278,22298,22300,22371,22394 nsv518822 10 100694678 100703080 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696274 S 2026 1 0 "" nsv521748 10 100814477 100831978 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694515 S 2026 1 0 "" nsv7514 10 100954377 100999125 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8834 S 9 0 1 "" NA12156 nsv831958 10 101201051 101401171 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448696 S 95 1 0 "" nsv7515 10 101356405 101389186 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv961 S 9 1 0 "" NA19240 nsv7516 10 101426384 101458184 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8835 S 9 0 1 "" NA12156 nsv831960 10 101583591 101745195 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448697 S 95 1 0 "" nsv527150 10 101621343 101623437 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703540 S 2026 0 1 "" nsv7517 10 101662835 101664084 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3896 S 9 1 0 "" NA12878 nsv7518 10 101728950 101773864 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5309 S 9 0 1 "" NA19129 nsv507574 10 101734333 101740333 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617808 S 4 1 0 "" CHM nsv516789 10 101748972 101770604 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv686328,nssv688060,nssv670874 M 2026 0 3 "" nsv516860 10 101948222 101996671 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv687282,nssv654515 M 2026 0 2 "" nsv831961 10 102046336 102207977 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448698 S 95 0 1 "" nsv519672 10 102108944 102122525 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694341 S 2026 1 0 "" nsv527448 10 102111569 102117482 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703889 S 2026 1 0 "" essv24916 10 102141840 102370625 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA06994 nsv831962 10 102156298 102342998 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448699,nssv1448700 M 95 2 0 "" dgv318e1 10 102193061 102265632 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv18867,essv20460 M 271 0 0 "" NA06994,NA07029 nsv8723 10 102203482 102259937 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18452 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA07029 nsv831963 10 102207978 102428669 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448701 S 95 0 1 "" nsv818783 10 102211414 102259196 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417055,nssv1417056 M 112 2 0 "" NA06994,NA07029 esv34217 10 102212947 102265632 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6987047,essv6980304 M 771 1 0 "" NA07029 nsv7519 10 102267314 102289260 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10776 S 9 1 0 "" NA18956 nsv525597 10 102341775 102352105 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701740 S 2026 0 1 "" nsv442206 10 102345103 102352103 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv520840 10 102350845 102352105 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv689910,nssv676311 M 2026 0 2 "" essv14536 10 102368626 102555726 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19202 nsv7520 10 102399106 102416455 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10777 S 9 1 0 "" NA18956 nsv831964 10 102407399 102581725 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448702 S 95 0 1 "" nsv507575 10 102425829 102431829 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620662 S 4 1 0 "" NA15510 nsv7521 10 102426641 102471270 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8836 S 9 0 1 "" NA12156 nsv7522 10 102441169 102473292 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5310 S 9 1 0 "" NA19129 nsv8725 10 102487783 102492792 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21702 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18502 nsv7524 10 102526443 102559553 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv962 S 9 1 0 "" NA19240 nsv831965 10 102666471 102832543 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448705,nssv1448704,nssv1448708,nssv1448709,nssv1448707,nssv1448710,nssv1448703 M 95 0 7 "" nsv515627 10 102678352 102697516 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv669086,nssv685656,nssv676676,nssv674074,nssv664153,nssv680693,nssv669143,nssv661591,nssv678267,nssv681366,nssv686756,nssv669368 M 2026 10 2 "" nsv467443 10 102679207 102757107 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542734 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00338 nsv517698 10 102715643 102766860 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv666988,nssv652885,nssv660862,nssv659735,nssv668656,nssv654660,nssv687630 M 2026 0 7 "" nsv7525 10 102771955 102790503 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5311 S 9 1 0 "" NA19129 nsv508603 10 102853760 102909914 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622745 S 4 0 1 "" NA18994 nsv831966 10 102874604 103037179 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448711 S 95 1 0 "" nsv7526 10 102906672 102939799 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8837 S 9 1 0 "" NA12156 nsv24777 10 102946846 102947481 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43355 M 24 "" nsv467444 10 103040561 103063644 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542735 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01001 esv2750847 10 103044972 103442635 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6987413,essv6983780,essv6983781,essv6983782 M 771 1 0 "" BEC_626 nsv831967 10 103121421 103296360 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448712 S 95 1 0 "" nsv526529 10 103330046 103344172 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702842 S 2026 0 1 "" nsv527185 10 103330046 103358644 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703581 S 2026 0 1 "" nsv482149 10 103815137 103817782 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558510 S 1 1 0 "" KB1 esv32953 10 103837774 103844754 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99378 S 51 0 1 "" 22335 esv32792 10 103844754 103850087 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93848 S 51 0 1 "" 21634 nsv518095 10 103998270 103998741 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695507 S 2026 0 1 "" nsv526665 10 104112832 104147701 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702994 S 2026 0 1 "" nsv525546 10 104130340 104164885 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701683 S 2026 0 1 "" nsv831968 10 104232697 104414392 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448713 S 95 1 0 "" nsv467445 10 104251349 104376924 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542736 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00072 nsv831969 10 104400998 104561788 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448714 S 95 0 1 "" esv33608 10 104530452 104532925 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99488 S 51 0 1 "" 22335 nsv7527 10 104555463 104589277 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8838 S 9 1 0 "" NA12156 nsv526666 10 104574320 104587470 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702995 S 2026 0 1 "" nsv7528 10 104812020 104856666 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1907 S 9 0 1 "" NA18555 nsv509365 10 104956934 105066137 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623755 S 4 1 0 "" NA18994 nsv25055 10 105087530 105087843 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43633 M 24 "" nsv7529 10 105143910 105174469 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1908 S 9 1 0 "" NA18555 nsv518987 10 105184076 105234555 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696455 S 2026 0 1 "" nsv524966 10 105191567 105467153 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700990 S 2026 0 1 "" nsv437692 10 105204922 105215191 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467573 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19145 nsv525801 10 105230676 105234555 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701984 S 2026 0 1 "" nsv7530 10 105376985 105408050 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6412 S 9 1 0 "" NA12156 nsv516106 10 105462442 105467153 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv657799,nssv673043,nssv667648,nssv656689,nssv682163,nssv666246,nssv670849,nssv672823 M 2026 0 8 "" nsv522595 10 105464003 105476067 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705985 S 2026 1 0 "" nsv518657 10 105467153 105473774 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696107 S 2026 1 0 "" nsv7531 10 105608154 105653446 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8839,nssv5312 M 9 0 2 "" NA12156,NA19129 nsv520864 10 105698783 105704389 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697656 S 2026 0 1 "" nsv7532 10 105732834 105763460 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5313 S 9 1 0 "" NA19129 nsv528782 10 105800390 105805314 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705449 S 2026 0 1 "" nsv831971 10 105869848 106051057 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448715 S 95 1 0 "" nsv7533 10 105979637 106003319 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8840 S 9 1 0 "" NA12156 nsv25421 10 106107674 106107727 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43999 M 24 "" nsv7536 10 106262776 106308499 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6414 S 9 0 1 "" NA12156 nsv831972 10 106273038 106439578 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448716 S 95 1 0 "" nsv831973 10 106582837 106733421 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448718 S 95 1 0 "" nsv527793 10 106709861 107562376 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704285 S 2026 1 0 "" nsv7537 10 106735122 106769634 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv963 S 9 1 0 "" NA19240 nsv528837 10 106766474 107107826 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705514 S 2026 1 0 "" nsv831974 10 106841983 106989942 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448719 S 95 1 0 "" nsv524731 10 106899935 106900891 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700722 S 2026 1 0 "" nsv526841 10 106956208 106967316 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703198 S 2026 0 1 "" nsv442590 10 107047028 107049160 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv526085 10 107079919 107285172 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702329 S 2026 1 0 "" nsv24427 10 107089682 107089764 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43005 M 24 "" esv2750848 10 107092132 107297420 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6987505,essv6984143,essv6988761 M 771 1 0 "" BEC_786 nsv467446 10 107110147 107285172 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542737 S 1557 1 0 "" 1780862414_A nsv24273 10 107242989 107243341 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv42851 M 24 "" nsv527263 10 107309979 107495151 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703669 S 2026 0 1 "" nsv831975 10 107333748 107507454 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448720 S 95 0 1 "" nsv24285 10 107376349 107381077 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv42863 M 24 "" nsv522763 10 107512917 107533290 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698402 S 2026 0 1 "" essv21028 10 107519652 107743529 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA06991 dgv319e1 10 107589284 107743529 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv7119,essv3022,essv5305,essv21135,essv24223,essv16221,essv23212,essv13145,essv10114,essv14698,essv135,essv17798,essv4665,essv17295,essv19913,essv10590,essv19512,essv18361,essv16473,essv5152,essv6961,essv17937,essv4920,essv24699,essv18930,essv443,essv23624,essv5459,essv10357,essv21421 M 271 0 0 "" NA10831,NA10856,NA11829,NA11994,NA12003,NA12005,NA12006,NA12156,NA12717,NA12813,NA12815,NA12864,NA18506,NA18537,NA18561,NA18563,NA18564,NA18582,NA18594,NA18632,NA18856,NA18952,NA18968,NA18981,NA19102,NA19130,NA19139,NA19159,NA19161,NA19240 dgv34e55 10 107595095 107673948 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv34654,esv2750849 M 771 0 2 "" BEC_547,NA06991 dgv320e1 10 107602546 107689620 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv21876,essv19341 M 271 0 0 "" NA06985,NA06991 nsv467448 10 107615243 107671437 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542738 S 1557 0 1 "" 1780862444_A nsv525954 10 107615243 107671437 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702162 S 2026 0 1 "" nsv818784 10 107615243 107671437 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418026,nssv1418015 M 112 0 2 "" NA06985,NA06991 nsv508605 10 107657908 107722823 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620138 S 4 0 1 "" NA15510 nsv438179 10 107658473 107670279 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470311,nssv470312 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA06985,NA06991 nsv7538 10 107663382 107695259 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5315 S 9 1 0 "" NA19129 nsv831976 10 107810759 107992053 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448721 S 95 1 0 "" nsv25437 10 107881537 107881537 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv44015 M 24 "" nsv24108 10 107881552 107881552 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv42686 M 24 "" nsv521684 10 107902166 107909355 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698304 S 2026 0 1 "" esv33595 10 107942183 107946708 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99399 S 51 1 0 "" 22335 nsv467449 10 107967673 108006360 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542739 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00651 nsv516112 10 107982339 108006360 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv666275,nssv683255,nssv689620 M 2026 0 3 "" nsv507576 10 108044799 108050799 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620667 S 4 1 0 "" NA15510 nsv831977 10 108216003 108403168 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448722 S 95 1 0 "" nsv24294 10 108241943 108241943 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv42872 M 24 "" nsv7539 10 108357233 108390617 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8841 S 9 1 0 "" NA12156 nsv25362 10 108423917 108424076 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43940 M 24 "" nsv7540 10 108438254 108472507 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3897 S 9 1 0 "" NA12878 nsv519092 10 108544581 108549689 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696565 S 2026 0 1 "" nsv831978 10 108574829 108738304 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448723 S 95 0 1 "" nsv7211 10 108607407 118341730 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv11242,nssv9805 M 9 0 0 "" NA15510,NA18507 nsv525854 10 108775105 108778660 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702048 S 2026 0 1 "" nsv7541 10 108800001 108816588 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5316 S 9 1 0 "" NA19129 essv1988 10 109121712 109123622 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18942 nsv831979 10 109128590 109298895 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448724 S 95 1 0 "" nsv524584 10 109173838 109181449 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700542 S 2026 0 1 "" nsv519842 10 109273146 109275918 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697080 S 2026 0 1 "" nsv467452 10 109282721 109330632 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542741 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00019 nsv521808 10 109446946 109458241 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694578 S 2026 0 1 "" dgv50n21 10 109458241 109461372 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv520591,nsv518681 M 2026 0 2 "" nsv518988 10 109803462 109813852 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696456 S 2026 0 1 "" nsv831980 10 109877210 110098626 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448725 S 95 0 1 "" nsv528845 10 109885028 109940460 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705524 S 2026 1 0 "" nsv521749 10 109899733 109922287 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694516 S 2026 1 0 "" nsv524577 10 109904338 109915196 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700533 S 2026 0 1 "" nsv7542 10 110119850 110154022 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8842 S 9 1 0 "" NA12156 nsv507577 10 110126618 110132618 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620669,nssv619213 M 4 2 0 "" NA10860,NA15510 esv2750850 10 110140034 110186810 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6989365,essv6983422 M 771 0 1 "" BEC_652 nsv520820 10 110149085 110183367 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697632 S 2026 0 1 "" nsv831983 10 110257909 110457308 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448726 S 95 1 0 "" nsv524360 10 110442901 110450222 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700271 S 2026 0 1 "" essv24256 10 110448977 110633486 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA10856 nsv524368 10 110449009 110450222 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700280 S 2026 0 1 "" esv2750851 10 110493778 110895201 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6986447,essv6986448,essv6983473,essv6983474,essv6983475 M 771 1 0 "" BEC_660 nsv437130 10 110804518 110809557 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467011 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA10857 nsv25010 10 110865934 110874916 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43588 M 24 "" esv33792 10 110928370 110952208 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99558 S 51 1 0 "" 22335 nsv7543 10 110939015 110964145 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6415,nssv2850 M 9 2 0 "" NA12156,NA18555 nsv467453 10 110958179 110996149 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542742 S 1557 0 1 "" 1780862078_A nsv526842 10 110959073 110960178 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703199 S 2026 1 0 "" nsv24256 10 111026368 111026687 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv42834 M 24 "" nsv528468 10 111192330 111323954 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705070 S 2026 0 1 "" nsv524604 10 111293348 111366944 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700565 S 2026 0 1 "" nsv831984 10 111336305 111544230 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448727 S 95 1 0 "" nsv7544 10 111351007 111385125 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8843 S 9 1 0 "" NA12156 nsv7545 10 111552677 111587679 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1909,nssv5317,nssv965,nssv3898,nssv10778,nssv6416 M 9 0 6 "" NA12156,NA12878,NA18555,NA18956,NA19129,NA19240 nsv508606 10 111558576 111571948 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622751,nssv620144,nssv618963,nssv617382 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv7547 10 111728269 111773528 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8844 S 9 0 1 "" NA12156 nsv524405 10 111996476 112003264 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700324 S 2026 0 1 "" nsv467454 10 112071990 112325746 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542743 S 1557 1 0 "" 1780862435_A nsv24538 10 112109994 112109994 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43116 M 24 "" nsv24209 10 112161643 112161643 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv42787 M 24 "" nsv520369 10 112196867 112215703 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv673044,nssv663259,nssv694496 M 2026 0 3 "" nsv526452 10 112253020 112408768 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702755 S 2026 1 0 "" nsv25037 10 112283764 112283854 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43615 M 24 "" nsv508607 10 112321521 112405090 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618965 S 4 0 1 "" NA10860 nsv25035 10 112470468 112470520 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43613 M 24 "" nsv24150 10 112553588 112558966 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv42728 M 24 "" nsv467455 10 112569289 112602461 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542744 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01238 nsv527892 10 112597908 112600829 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704395 S 2026 0 1 "" nsv831985 10 112642079 112793093 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448729,nssv1448730 M 95 1 1 "" nsv7548 10 112649054 112680498 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3899 S 9 1 0 "" NA12878 nsv518667 10 112682792 112687231 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696116 S 2026 0 1 "" nsv527400 10 112823551 112833075 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703836 S 2026 0 1 "" nsv7549 10 112830254 112845854 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5318 S 9 1 0 "" NA19129 nsv467456 10 112899095 112931770 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542745 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01288 nsv467457 10 112958426 112992712 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542746 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00139 nsv831986 10 112988610 113189580 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448731,nssv1448732 M 95 1 1 "" nsv520693 10 112990307 112992712 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv692022,nssv675428,nssv674138 M 2026 0 3 "" nsv519051 10 112990307 113000349 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696522 S 2026 0 1 "" nsv521847 10 113001028 113001283 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694622 S 2026 1 0 "" nsv528063 10 113001028 113050969 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704599 S 2026 1 0 "" nsv524684 10 113221114 113224690 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700655 S 2026 0 1 "" nsv831987 10 113420497 113641436 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448733,nssv1448737,nssv1448741,nssv1448738,nssv1448736,nssv1448735,nssv1448742,nssv1448734,nssv1448743,nssv1448744,nssv1448748,nssv1448747,nssv1448746,nssv1448745 M 95 2 12 "" nsv522685 10 113494074 113502956 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv706094 S 2026 0 1 "" nsv515780 10 113499141 113502956 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701491,nssv664753,nssv690752 M 2026 2 1 "" nsv831988 10 113577753 113744528 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448749 S 95 1 0 "" nsv7550 10 113586629 113610425 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9807 S 9 1 0 "" NA18507 nsv7551 10 113617609 113639805 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8845 S 9 0 1 "" NA12156 nsv508608 10 113780640 113908160 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622755,nssv620147 M 4 0 2 "" NA15510,NA18994 nsv831989 10 113861942 114051349 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448750 S 95 1 0 "" nsv471669 10 113970162 114120813 CNV Gain Sharp et al 2005 15918152 BAC_aCGH,FISH Eichler Segmental Duplication BAC array nssv550811 S 48 1 0 "" NA10493 nsv526495 10 114039625 114043973 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702804 S 2026 0 1 "" nsv510233 10 114044336 114050336 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622288,nssv618332 M 4 0 2 "" CHM,NA10860 nsv508609 10 114088063 114135301 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617383,nssv618966 M 4 0 2 "" CHM,NA10860 nsv7552 10 114090188 114132845 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3900,nssv966,nssv6417,nssv5319 M 9 0 4 "" NA12156,NA12878,NA19129,NA19240 nsv831990 10 114099015 114281746 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448752 S 95 0 1 "" nsv8726 10 114101694 114107088 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17902,nssv21732,nssv19585,nssv17590,nssv19206,nssv20288,nssv18744,nssv21313,nssv24647,nssv17825,nssv19515,nssv19869 M 31 7 5 Samples from several populations that are part of the HapMap project. "" NA10847,NA10863,NA12155,NA12740,NA12802,NA18502,NA18504,NA18537,NA18942,NA18975,NA18980,NA19221 nsv442591 10 114102065 114106829 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv24854 10 114102174 114106650 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43432 M 24 "" nsv831991 10 114162846 114331888 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448753 S 95 0 1 "" nsv526766 10 114342951 114366255 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703118 S 2026 0 1 "" nsv510234 10 114380575 114386575 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624207 S 4 0 1 "" NA18994 nsv525880 10 114458106 114464924 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702080 S 2026 0 1 "" nsv831992 10 114509331 114529258 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448754 S 95 0 1 "" nsv7553 10 114835697 114880636 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8846 S 9 0 1 "" NA12156 nsv24033 10 114867152 114867207 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv42611 M 24 "" nsv527837 10 114878598 114901069 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704335 S 2026 0 1 "" nsv437693 10 114901069 114990004 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467574 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18872 nsv7554 10 114928407 114960555 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10779 S 9 1 0 "" NA18956 nsv831994 10 115130629 115306501 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448755 S 95 1 0 "" nsv516309 10 115199055 115204678 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv679418,nssv670263,nssv679515,nssv654619,nssv682822,nssv667487,nssv661097,nssv658087,nssv693253,nssv685155 M 2026 0 10 "" nsv519312 10 115306802 115309701 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv655352,nssv691054 M 2026 0 2 "" nsv525228 10 115317074 115319336 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701317 S 2026 0 1 "" nsv7555 10 115335104 115379939 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8847 S 9 0 1 "" NA12156 nsv522830 10 115383938 115386195 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698480 S 2026 0 1 "" nsv526006 10 115411986 115412878 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702234 S 2026 0 1 "" nsv7556 10 115482916 115527949 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8848 S 9 0 1 "" NA12156 nsv25251 10 115499109 115499422 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43829 M 24 "" nsv831995 10 115554037 115757337 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448758,nssv1448757,nssv1448756 M 95 1 2 "" nsv507578 10 115586580 115592580 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619224 S 4 1 0 "" NA10860 nsv525892 10 115641243 115669498 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702095 S 2026 0 1 "" nsv517356 10 115651155 115675177 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv674139,nssv702245,nssv705768,nssv701769,nssv651806,nssv695635,nssv690091,nssv667818,nssv669144,nssv702461 M 2026 3 7 "" nsv7558 10 115694441 115723946 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3901 S 9 1 0 "" NA12878 nsv25169 10 115698400 115698583 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43747 M 24 "" nsv7559 10 115746482 115791891 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6418 S 9 0 1 "" NA12156 nsv7560 10 115754041 115784278 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5320 S 9 1 0 "" NA19129 nsv509366 10 115824833 115858632 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618082 S 4 1 0 "" CHM nsv528140 10 116407002 116407537 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704686 S 2026 0 1 "" nsv7561 10 116480491 116513595 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8849 S 9 1 0 "" NA12156 nsv516803 10 116518284 116546836 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv671040,nssv662133,nssv674966,nssv673596 M 2026 0 4 "" nsv518081 10 116566179 116572492 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695494 S 2026 0 1 "" nsv831996 10 116591542 116762958 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448759 S 95 1 0 "" nsv831997 10 116679542 116845688 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448760 S 95 1 0 "" nsv831998 10 116812837 116959608 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448761,nssv1448763 M 95 0 2 "" nsv831999 10 116928715 117118223 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448764 S 95 0 1 "" nsv517062 10 117094878 117111956 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv653714,nssv683723 M 2026 0 2 "" nsv510235 10 117226061 117232061 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624208 S 4 0 1 "" NA18994 nsv516325 10 117230761 117231488 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv655998,nssv667591 M 2026 0 2 "" essv8563 10 117404858 117461605 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18503 nsv467458 10 117471872 117513328 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542747 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01185 nsv8727 10 117474850 117537745 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21343 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18504 nsv25015 10 117487658 117494632 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43593 M 24 "" nsv467459 10 117557725 117592170 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542748 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01063 nsv519531 10 117670513 117672616 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696904 S 2026 1 0 "" nsv24172 10 117701607 117701992 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv42750 M 24 "" nsv518349 10 117770080 117776746 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695777 S 2026 0 1 "" nsv832000 10 117934482 118106243 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448765 S 95 1 0 "" nsv519769 10 118012066 118014534 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv675359,nssv658407 M 2026 2 0 "" nsv832001 10 118128360 118305049 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448766 S 95 0 1 "" nsv7562 10 118488381 118533328 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5321 S 9 0 1 "" NA19129 nsv832002 10 118787060 118995830 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448767,nssv1448768 M 95 1 1 "" nsv7563 10 118820375 118854229 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2851 S 9 1 0 "" NA18555 nsv7564 10 119025286 119058279 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6419 S 9 1 0 "" NA12156 nsv7565 10 119157451 119202519 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8850 S 9 0 1 "" NA12156 nsv509367 10 119163991 119272134 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623781 S 4 1 0 "" NA18994 nsv516718 10 119198159 119200365 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv663274,nssv670431 M 2026 2 0 "" nsv832003 10 119280852 119477782 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448769 S 95 0 1 "" nsv520464 10 119285919 119326982 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697436 S 2026 0 1 "" nsv818785 10 119436858 119441522 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417726 S 112 0 1 "" NA19003 nsv832005 10 119639860 119786456 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448770 S 95 1 0 "" nsv516870 10 119695428 119778173 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv685789,nssv654601 M 2026 0 2 "" nsv7566 10 119766603 119811820 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8851 S 9 0 1 "" NA12156 nsv528184 10 119768381 119783432 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704739 S 2026 0 1 "" nsv7567 10 119774049 119806725 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6420 S 9 1 0 "" NA12156 nsv832006 10 120307375 120508913 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448771 S 95 1 0 "" nsv521518 10 120323723 120332855 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698135 S 2026 0 1 "" nsv7569 10 120328309 120360611 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5322 S 9 1 0 "" NA19129 nsv24391 10 120434774 120434774 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv42969 M 24 "" nsv523236 10 120551086 120577255 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698962 S 2026 0 1 "" nsv516795 10 120679836 120680822 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv674891,nssv671387,nssv660027,nssv662920,nssv670948 M 2026 3 2 "" nsv518658 10 120693675 120696565 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696108 S 2026 0 1 "" nsv527630 10 120693675 120698157 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704098 S 2026 0 1 "" nsv832007 10 121088268 121281904 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448772 S 95 1 0 "" nsv522432 10 121139393 121186052 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705788 S 2026 0 1 "" nsv7570 10 121275052 121300459 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1911 S 9 1 0 "" NA18555 nsv522347 10 121418818 121422914 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695127 S 2026 0 1 "" nsv7571 10 121585406 121620064 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2852 S 9 1 0 "" NA18555 nsv24511 10 122121017 122127475 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43089 M 24 "" nsv508610 10 122141330 122221590 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620152,nssv618968,nssv622765 M 4 0 3 "" NA10860,NA15510,NA18994 nsv510236 10 122160142 122166142 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618333 S 4 0 1 "" CHM nsv7572 10 122196735 122224051 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8852 S 9 0 1 "" NA12156 nsv528787 10 122336055 122471952 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705457 S 2026 1 0 "" nsv437694 10 122384204 122397176 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467575 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19100 nsv438180 10 122385300 122392390 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470318,nssv470313,nssv470316,nssv470317,nssv470315,nssv470314 M 269 0 6 Samples from several populations that are part of the HapMap project. "" NA19099,NA19100,NA19128,NA19129,NA19141,NA19142 nsv518322 10 122431376 122451473 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695752 S 2026 1 0 "" nsv522409 10 122502825 122520128 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695191 S 2026 0 1 "" nsv525609 10 122593981 122626720 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701754 S 2026 0 1 "" dgv321e1 10 122625702 122891863 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv13056,essv11565 M 271 0 0 "" NA18852,NA19173 nsv7573 10 122646703 122673091 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9935 S 9 1 0 "" NA18507 nsv517219 10 122659198 122672799 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv654045,nssv670814,nssv682860,nssv672725 M 2026 0 4 "" nsv7574 10 122684391 122717992 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8853 S 9 1 0 "" NA12156 nsv24772 10 122691130 122691421 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43350 M 24 "" essv10073 10 122709923 122891863 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19099 nsv516037 10 122726411 122754171 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv657652,nssv665856,nssv667613,nssv661132,nssv671440,nssv654984 M 2026 0 6 "" nsv437695 10 122754171 122778144 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467576 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18860 nsv516918 10 122759266 122779808 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv692793,nssv674016,nssv687434,nssv688985,nssv686197,nssv673578,nssv656383,nssv690434,nssv663461,nssv680851,nssv671622,nssv686594,nssv673774,nssv688253,nssv653476,nssv678042,nssv676312,nssv656536,nssv657780,nssv669668,nssv659291,nssv686923,nssv668802,nssv654032,nssv680571,nssv664228,nssv662007,nssv677119,nssv672064,nssv678860,nssv662184,nssv669168,nssv685346,nssv691862,nssv672726,nssv664135,nssv686630,nssv663569,nssv674432,nssv652547,nssv666918,nssv692983,nssv664154,nssv658926,nssv675014,nssv679791,nssv685706,nssv668166,nssv667114,nssv662352,nssv663436,nssv683207,nssv661667,nssv684559,nssv680903,nssv652614,nssv659260,nssv680335,nssv668936,nssv651737,nssv660534,nssv690733,nssv656691,nssv662457,nssv655299,nssv667240,nssv667556,nssv654561,nssv675621,nssv688166,nssv663510,nssv672412,nssv671539,nssv683138,nssv672885,nssv680622,nssv689282,nssv664301,nssv681522,nssv655396,nssv651766,nssv678182,nssv686827,nssv654307,nssv653182,nssv680388,nssv665792,nssv688514,nssv657268,nssv676405,nssv666428,nssv655748,nssv693955,nssv693657,nssv676976,nssv687860,nssv653204,nssv652756,nssv664329,nssv653527,nssv652649,nssv660298,nssv666938,nssv664844,nssv686307,nssv656580,nssv690147,nssv660819,nssv671461,nssv677014,nssv675141,nssv677502,nssv674551,nssv690908,nssv663981,nssv671666,nssv653641,nssv664910,nssv670037,nssv679394,nssv667972,nssv656272,nssv674967,nssv672258,nssv683374,nssv659700,nssv657488,nssv679419,nssv682413,nssv675329,nssv662554,nssv682393,nssv682280,nssv687167,nssv681604,nssv669861,nssv653591,nssv655143,nssv667911,nssv676071,nssv657363,nssv680929 M 2026 2 140 "" nsv8728 10 122759805 122777871 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23019,nssv19220,nssv19679,nssv22197,nssv19709 M 31 0 4 Samples from several populations that are part of the HapMap project. "" NA18853,NA18860,NA19132,NA19173 dgv120n27 10 122759878 122774992 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv467464,nsv467463,nsv467462,nsv467465,nsv467466 M 1557 0 5 "" HGDP00620,HGDP01028,HGDP01405,HGDP01408,NINDS_142 nsv818786 10 122759878 122774992 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418486,nssv1417907,nssv1418177,nssv1416586,nssv1417906,nssv1416468,nssv1417905,nssv1416585,nssv1418178,nssv1416469,nssv1416584,nssv1418487 M 112 0 12 "" NA18515,NA18516,NA18852,NA18853,NA18854,NA19143,NA19145,NA19171,NA19172,NA19173,NA19193,NA19194 nsv442208 10 122760653 122766583 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv30n17 10 122765938 122778144 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437696,nsv437697,nsv437698 M 60 0 3 "" NA18854,NA19173,NA19194 nsv832008 10 122847905 123036763 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448774 S 95 1 0 "" nsv7575 10 122911888 122956539 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3902 S 9 0 1 "" NA12878 nsv517064 10 122931371 122946738 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv667740,nssv674190,nssv690030,nssv689890,nssv673368,nssv657828,nssv670850,nssv665574,nssv685862,nssv653715 M 2026 0 10 "" nsv24449 10 122990625 122991783 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43027 M 24 "" nsv516734 10 122994629 122997016 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv676537,nssv692770,nssv670526 M 2026 0 3 "" nsv527518 10 122994629 123003732 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703972 S 2026 0 1 "" nsv527088 10 123183828 123225862 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703467 S 2026 0 1 "" nsv7576 10 123411135 123413528 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10780 S 9 1 0 "" NA18956 nsv7577 10 123412436 123453693 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6421 S 9 0 1 "" NA12156 esv34777 10 123421836 123451000 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6978718,essv6989040,essv6988036 M 771 0 1 "" NA12156 nsv467467 10 123426236 123428112 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542755 S 1557 0 1 "" 1780862066_A nsv433262 10 123426236 123446260 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463143 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA12156 nsv517548 10 123426236 123451056 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv682314,nssv677717,nssv652814,nssv655079,nssv671142,nssv667281,nssv683972,nssv652334 M 2026 0 8 "" essv18482 10 123426455 123451644 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12156 nsv528446 10 123462020 123465435 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705041 S 2026 0 1 "" nsv24989 10 123479171 123479484 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43567 M 24 "" nsv832009 10 123764473 123939046 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448775 S 95 0 1 "" nsv519434 10 123832513 123836480 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv656193,nssv689058 M 2026 0 2 "" nsv526940 10 123839455 123839595 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703308 S 2026 0 1 "" nsv467468 10 123893123 123903320 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542756 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01169 nsv521165 10 123898801 123901335 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv686481,nssv683555 M 2026 0 2 "" nsv7578 10 124088603 124134052 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5323 S 9 0 1 "" NA19129 nsv7580 10 124195782 124240486 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8854 S 9 0 1 "" NA12156 nsv516138 10 124230775 124232807 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv667307,nssv659478,nssv666446 M 2026 0 3 "" nsv8729 10 124247230 124253028 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22523 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18972 dgv322e1 10 124253065 124444805 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv8859,essv313,essv3067,essv10101,essv4198,essv4814,essv5829,essv13718,essv12852,essv8196,essv7388,essv14425,essv11572,essv10943,essv17083,essv247,essv17806,essv1629,essv430,essv778,essv19677,essv5108,essv5378 M 271 0 0 "" NA10831,NA12264,NA18508,NA18526,NA18563,NA18566,NA18577,NA18620,NA18623,NA18942,NA18948,NA18952,NA18956,NA18978,NA18981,NA19116,NA19119,NA19120,NA19130,NA19172,NA19173,NA19201,NA19209 nsv508611 10 124312325 124380491 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617384,nssv618970,nssv622769 M 4 0 3 "" CHM,NA10860,NA18994 nsv8730 10 124312843 124315758 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17809 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18572 nsv7581 10 124319442 124388839 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv967,nssv9808,nssv10782,nssv11244,nssv10781,nssv3903,nssv9263,nssv6422,nssv1912 M 9 0 8 "" NA12156,NA12878,NA15510,NA18507,NA18517,NA18555,NA18956,NA19240 nsv55 10 124325281 124336870 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv55 S 1 1 0 "" NA15510 nsv7582 10 124325281 124336870 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv11243 S 9 1 0 "" NA15510 nsv8731 10 124328905 124371700 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24673,nssv19739,nssv17839,nssv18834,nssv21463,nssv21822,nssv19899,nssv23047,nssv19615,nssv19929,nssv21751,nssv20027,nssv18804,nssv19280,nssv21792,nssv22124,nssv17932,nssv19533,nssv18482,nssv20317,nssv19997,nssv19246,nssv22227,nssv19196,nssv17620,nssv17561,nssv19545,nssv20287,nssv19645,nssv21373,nssv19668,nssv19575,nssv17869,nssv19276,nssv19226,nssv19250,nssv18512,nssv20318,nssv22257,nssv21852,nssv17855,nssv22583,nssv19534,nssv19236,nssv22154,nssv22553,nssv19564,nssv20578 M 31 23 19 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10847,NA10863,NA11830,NA12155,NA12740,NA12802,NA12872,NA18502,NA18504,NA18517,NA18537,NA18552,NA18563,NA18564,NA18572,NA18853,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19144,NA19173,NA19221,NA19240 nsv442592 10 124331524 124341001 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" esv33340 10 124335393 124341605 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97547,essv101398,essv95270,essv92748,essv93739,essv97205,essv94296 M 51 0 7 "" 21616,21805,21872,21944,21972,22075,22394 nsv7583 10 124342051 124369026 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5324 S 9 1 0 "" NA19129 nsv507579 10 124344478 124350478 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620681 S 4 1 0 "" NA15510 nsv56 10 124347949 124377296 CNV Loss Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv56 S 1 0 1 "" NA15510 nsv24315 10 124393706 124393706 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv42893 M 24 "" nsv7584 10 124431828 124461678 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3904,nssv8855 M 9 2 0 "" NA12156,NA12878 nsv509370 10 124440399 124452093 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623787,nssv619796 M 4 2 0 "" NA10860,NA18994 nsv7585 10 124471051 124474410 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv968 S 9 1 0 "" NA19240 nsv25104 10 124536881 124537201 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43682 M 24 "" nsv24903 10 124563358 124563517 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43481 M 24 "" nsv832010 10 124576470 124787380 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448779,nssv1448778,nssv1448776,nssv1448777 M 95 4 0 "" nsv7586 10 124732193 124765558 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10783,nssv1913 M 9 2 0 "" NA18555,NA18956 nsv7587 10 124946768 124978091 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8856 S 9 0 1 "" NA12156 dgv323e1 10 125047207 125259149 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv6405,essv7108,essv23082,essv16646,essv6317,essv3282 M 271 0 0 "" NA12812,NA18537,NA18572,NA18609,NA18972,NA19142 nsv8732 10 125161337 125164758 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17591 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA12872 nsv527432 10 125182315 125184274 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703871 S 2026 0 1 "" nsv8733 10 125182454 125184627 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21882 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18502 nsv8734 10 125208363 125211360 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22287 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19132 nsv517588 10 125209811 125215503 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv666201,nssv652448,nssv662185 M 2026 0 3 "" nsv509371 10 125220151 125284043 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623790 S 4 1 0 "" NA18994 nsv832011 10 125340004 125509787 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448781,nssv1448780 M 95 1 1 "" nsv24499 10 125368941 125369004 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43077 M 24 "" nsv467469 10 125418054 125437695 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542757 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00787 nsv527554 10 125436928 125437695 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704015 S 2026 0 1 "" nsv25320 10 125494500 125495163 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43898 M 24 "" nsv25271 10 125654367 125654367 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43849 M 24 "" nsv524333 10 125740515 125758210 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700240 S 2026 0 1 "" esv33043 10 125794410 125794698 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv94303 S 51 0 1 "" 22394 nsv832012 10 125979292 126140227 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448783,nssv1448782 M 95 1 1 "" nsv519247 10 126037238 126039416 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696739 S 2026 1 0 "" nsv7588 10 126056245 126075084 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv969 S 9 0 1 "" NA19240 nsv442211 10 126060139 126064222 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv516914 10 126161602 126163546 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv654943,nssv673647 M 2026 0 2 "" nsv526655 10 126176761 126182366 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702983 S 2026 0 1 "" nsv515761 10 126179856 126182366 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv659955,nssv701110,nssv675921,nssv663511,nssv662524,nssv667741,nssv668803,nssv672912,nssv668577,nssv663297,nssv658927,nssv659701,nssv691840,nssv662921,nssv654308,nssv676313,nssv664703 M 2026 0 17 "" nsv818787 10 126179856 126182366 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416776,nssv1416775 M 112 0 2 "" NA19159,NA19161 nsv525263 10 126180599 126184117 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701363 S 2026 1 0 "" nsv517982 10 126193803 126225492 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695394 S 2026 0 1 "" nsv521161 10 126197196 126414813 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv683269,nssv695395,nssv701557,nssv705244,nssv685657,nssv705602 M 2026 1 5 "" nsv467470 10 126207553 126223073 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542758 S 1557 0 1 "" NINDS_174 nsv832013 10 126236132 126455020 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448785,nssv1448786,nssv1448788,nssv1448787 M 95 0 4 "" nsv467471 10 126253483 126288175 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542759 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01100 nsv7589 10 126277134 126312137 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv970 S 9 1 0 "" NA19240 nsv467473 10 126284349 126300032 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542761 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00546 nsv832014 10 126352795 126540806 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448789 S 95 0 1 "" nsv7591 10 126518901 126553738 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3905 S 9 1 0 "" NA12878 nsv523643 10 126565200 126577634 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699444 S 2026 0 1 "" nsv517756 10 126571974 126580761 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv688808,nssv671074,nssv689195,nssv666961,nssv653130,nssv681014,nssv655999,nssv684179,nssv677603,nssv681948,nssv687123 M 2026 0 11 "" nsv518907 10 126671678 126681170 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696365 S 2026 0 1 "" dgv51n21 10 126674124 126683470 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv523644,nsv516502 M 2026 0 3 "" nsv520770 10 126685259 126685663 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694400 S 2026 1 0 "" nsv25051 10 126719185 126727605 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43629 M 24 "" nsv7592 10 126758494 126782410 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8857 S 9 0 1 "" NA12156 nsv7593 10 126772983 126804244 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6424 S 9 1 0 "" NA12156 nsv7594 10 126911748 126940688 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10784 S 9 1 0 "" NA18956 nsv7595 10 126915503 126942475 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8858 S 9 0 1 "" NA12156 nsv832016 10 126970048 127150224 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448790 S 95 1 0 "" nsv517169 10 126993292 126994600 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv662675,nssv672102,nssv654822,nssv653916,nssv654249 M 2026 0 5 "" nsv522877 10 127041257 127082411 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698532 S 2026 1 0 "" nsv517725 10 127050476 127053491 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv653015,nssv668042 M 2026 0 2 "" nsv515901 10 127055059 127089397 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv680734,nssv665197,nssv706073 M 2026 3 0 "" nsv7596 10 127069240 127114084 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8859 S 9 0 1 "" NA12156 nsv7597 10 127135896 127160086 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9809 S 9 1 0 "" NA18507 nsv7598 10 127163208 127186616 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8860 S 9 1 0 "" NA12156 nsv832017 10 127278547 127475574 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448791 S 95 0 1 "" nsv467476 10 127299815 127404575 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542762 S 1557 0 1 "" 1780862576_A nsv527887 10 127315443 127375294 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704390 S 2026 1 0 "" nsv7599 10 127347624 127380445 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8861 S 9 0 1 "" NA12156 dgv324e1 10 127443890 127776692 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv15061,essv16241 M 271 0 0 "" NA19129,NA19161 esv33326 10 127482393 127483878 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100891,essv97226 M 51 2 0 "" 21656,22075 nsv8736 10 127501348 127504337 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21493 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18504 nsv8737 10 127511833 127515524 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21912 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18502 nsv8738 10 127561783 127607466 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21942,nssv20347,nssv22613,nssv19266,nssv17885,nssv19310,nssv19675 M 31 0 7 Samples from several populations that are part of the HapMap project. "" NA10847,NA10863,NA11830,NA18502,NA18853,NA18972,NA18980 esv33389 10 127603552 127607467 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98635 S 51 1 0 "" 22085 nsv527133 10 127623699 127646057 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703520 S 2026 0 1 "" nsv516813 10 127746270 127746447 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv673388,nssv682692,nssv654686,nssv703479,nssv654748,nssv671112,nssv683818,nssv657800 M 2026 7 1 "" nsv8739 10 127762583 127766531 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19340 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18853 nsv7600 10 127912549 127945711 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5325 S 9 1 0 "" NA19129 nsv524124 10 127933028 127934583 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700002 S 2026 0 1 "" nsv467477 10 127941199 127953084 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542763 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00748 nsv525054 10 128134068 128134876 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701102 S 2026 0 1 "" nsv7602 10 128140522 128185309 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8862 S 9 0 1 "" NA12156 nsv521809 10 128150265 128204553 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694579 S 2026 0 1 "" nsv7603 10 128306000 128308799 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10786 S 9 1 0 "" NA18956 nsv7604 10 128338419 128371868 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5326 S 9 1 0 "" NA19129 nsv24682 10 128341431 128341507 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43260 M 24 "" nsv467478 10 128377139 128559535 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542764 S 1557 0 1 "" 1780862224_A nsv832018 10 128406041 128594436 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448792 S 95 1 0 "" nsv515706 10 128516013 128603832 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv675205,nssv658963,nssv684791,nssv664497 M 2026 2 2 "" nsv7605 10 128656441 128681141 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9810 S 9 1 0 "" NA18507 essv14789 10 128798515 129129012 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19159 essv13354 10 128881619 129008874 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19159 nsv8740 10 128936901 128939192 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17915 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA10847 nsv832019 10 128955814 129077639 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448793 S 95 0 1 "" nsv519173 10 128992767 129022492 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696656 S 2026 0 1 "" nsv8741 10 129048372 129051997 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19370,nssv22317,nssv18542 M 31 0 3 Samples from several populations that are part of the HapMap project. "" NA07029,NA18853,NA19132 nsv25417 10 129080297 129080297 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43995 M 24 "" nsv526580 10 129083380 129087374 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702898 S 2026 0 1 "" nsv7606 10 129187343 129207616 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv971 S 9 1 0 "" NA19240 nsv524369 10 129194065 129199240 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700281 S 2026 1 0 "" nsv7607 10 129217079 129262188 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8863 S 9 0 1 "" NA12156 nsv519770 10 129270851 129271086 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697040 S 2026 0 1 "" nsv520980 10 129270851 129305426 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697720 S 2026 0 1 "" nsv467480 10 129369269 129376223 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542765 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01345 nsv24537 10 129392922 129392922 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43115 M 24 "" nsv7608 10 129474188 129509631 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3906 S 9 1 0 "" NA12878 nsv509372 10 129475986 129515210 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619804 S 4 1 0 "" NA10860 nsv832020 10 129504637 129697948 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448794 S 95 1 0 "" nsv520506 10 129511102 129513841 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv688696,nssv671905 M 2026 0 2 "" nsv518989 10 129522131 129533577 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694295 S 2026 0 1 "" nsv520219 10 129523698 129531492 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697289 S 2026 0 1 "" nsv520082 10 129531492 129533577 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv683939,nssv660552,nssv673775 M 2026 0 3 "" nsv467481 10 129780159 129796354 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542766 S 1557 0 1 "" NINDS_54 dgv52n21 10 129780159 129797479 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv523184,nsv516114 M 2026 0 5 "" nsv523484 10 129791383 129794907 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699250 S 2026 0 1 "" nsv518611 10 129949266 129954573 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696057 S 2026 0 1 "" nsv7609 10 129994327 130018298 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8864 S 9 1 0 "" NA12156 nsv519973 10 130027095 130041400 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697157 S 2026 1 0 "" nsv509373 10 130072125 130166292 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621119,nssv619807,nssv618083,nssv623793 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv7610 10 130139654 130167581 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3907,nssv972,nssv11245,nssv1914,nssv6425,nssv5327 M 9 6 0 "" NA12156,NA12878,NA15510,NA18555,NA19129,NA19240 nsv58 10 130150405 130155431 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv58 S 1 1 0 "" NA15510 nsv528097 10 130316967 130322790 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704637 S 2026 0 1 "" nsv832021 10 130325185 130493639 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448796 S 95 1 0 "" nsv7611 10 130374570 130419230 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8865 S 9 0 1 "" NA12156 nsv518512 10 130513996 130514828 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695952 S 2026 0 1 "" nsv519955 10 130574703 130576928 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv687283,nssv690148,nssv659627,nssv661059,nssv685284 M 2026 0 5 "" nsv7613 10 130581147 130626008 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8866 S 9 0 1 "" NA12156 nsv7614 10 130656615 130701443 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5328 S 9 0 1 "" NA19129 nsv832022 10 130670488 130827873 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448797 S 95 0 1 "" nsv509374 10 130672590 130770008 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623797 S 4 1 0 "" NA18994 nsv24167 10 130726862 130727264 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv42745 M 24 "" nsv517657 10 130727042 130727480 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv652703,nssv668627,nssv674268,nssv655896,nssv662241 M 2026 0 5 "" nsv7615 10 130923355 130955545 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3908 S 9 1 0 "" NA12878 dgv53n21 10 130997931 131098734 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv525888,nsv525577 M 2026 2 0 "" nsv7616 10 131021665 131066996 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8867 S 9 0 1 "" NA12156 nsv25092 10 131102929 131102929 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43670 M 24 "" nsv7617 10 131192476 131226033 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5329 S 9 1 0 "" NA19129 nsv24217 10 131307023 131307023 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv42795 M 24 "" esv33589 10 131319598 131320601 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97248 S 51 0 1 "" 22075 nsv516662 10 131361712 131364237 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv669992,nssv690506 M 2026 0 2 "" nsv832023 10 131500713 131698871 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448802,nssv1448804,nssv1448820,nssv1448805,nssv1448803,nssv1448809,nssv1448816,nssv1448808,nssv1448807,nssv1448812,nssv1448810,nssv1448798,nssv1448813,nssv1448819,nssv1448818,nssv1448811,nssv1448801,nssv1448815,nssv1448814,nssv1448799,nssv1448800 M 95 8 13 "" nsv7618 10 131618031 131650135 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6426 S 9 1 0 "" NA12156 nsv832024 10 131635728 131836090 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448821 S 95 0 1 "" nsv516699 10 131874950 132535023 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700904,nssv691362,nssv686990,nssv696781,nssv700905,nssv696367,nssv670221,nssv704291,nssv670527,nssv673466,nssv703515,nssv692771,nssv696366 M 2026 9 4 "" nsv24889 10 131959147 131959202 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43467 M 24 "" nsv467485 10 132039565 132092044 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542768 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00976 dgv17n6 10 132048416 132048801 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv24616,nsv24145 M 24 "" nsv832025 10 132121744 132287752 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448822 S 95 1 0 "" nsv442212 10 132208544 132210099 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv7619 10 132248483 132281257 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5330 S 9 1 0 "" NA19129 nsv24438 10 132262172 132262316 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43016 M 24 "" nsv25288 10 132447578 132447795 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43866 M 24 "" nsv467486 10 132460162 132488265 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542769 S 1557 0 1 "" NINDS_65 nsv7620 10 132499222 132543974 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8868 S 9 0 1 "" NA12156 nsv25190 10 132657823 132657823 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43768 M 24 "" nsv526964 10 132721809 132725351 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703336 S 2026 0 1 "" nsv832027 10 132744573 132902305 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448823 S 95 1 0 "" nsv7621 10 132770124 132805416 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1915 S 9 0 1 "" NA18555 esv32814 10 132799241 132802636 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101111,essv94391,essv93113,essv93094,essv95377,essv98994,essv97096,essv98596,essv92615,essv98098 M 51 7 2 "" 21618,21808,21863,21872,21938,22075,22085,22233,22259 nsv832028 10 132891454 133062922 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448824 S 95 0 1 "" nsv7622 10 132959577 132975170 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv974 S 9 1 0 "" NA19240 nsv25335 10 132977961 132978081 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43913 M 24 "" nsv509375 10 132998789 133067309 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621121 S 4 1 0 "" NA15510 nsv832029 10 133010277 133183637 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448825,nssv1448826 M 95 0 2 "" nsv521004 10 133077948 133081590 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697731 S 2026 0 1 "" nsv516804 10 133127555 133143108 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv671041,nssv674521,nssv701274 M 2026 0 3 "" nsv518204 10 133136594 133608348 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695628 S 2026 1 0 "" nsv24728 10 133150695 133150750 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43306 M 24 "" nsv520342 10 133218660 133225079 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697359 S 2026 0 1 "" dgv54n21 10 133321642 133323688 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv519843,nsv524897 M 2026 0 4 "" nsv7624 10 133384817 133415524 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8869 S 9 1 0 "" NA12156 nsv467488 10 133419438 133479459 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542770 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00796 nsv24635 10 133422785 133422843 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43213 M 24 "" dgv325e1 10 133485668 133598856 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv10177,essv8038,essv11380,essv14918,essv12950 M 271 0 0 "" NA18516,NA19102,NA19103,NA19127,NA19129 essv15947 10 133485668 133634871 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18515 essv13994 10 133497122 133503143 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19098 nsv442213 10 133497123 133508705 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv516002 10 133498706 133508337 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv675789,nssv676042,nssv665659,nssv668043,nssv658244,nssv660299,nssv670222,nssv686544,nssv690473,nssv660766,nssv702964,nssv686940,nssv683609 M 2026 0 13 "" nsv25041 10 133505524 133505782 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43619 M 24 "" nsv8742 10 133578545 133584560 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19306,nssv19256,nssv17899,nssv20057 M 31 0 4 Samples from several populations that are part of the HapMap project. "" NA18552,NA18563,NA18572,NA19007 nsv8743 10 133602112 133603333 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19698,nssv20117,nssv23105,nssv19594,nssv17621 M 31 0 5 Samples from several populations that are part of the HapMap project. "" NA10839,NA12872,NA18563,NA18564,NA18860 nsv8744 10 133620379 133623348 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19605 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18537 nsv7625 10 133670789 133704659 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8870 S 9 1 0 "" NA12156 nsv437131 10 133701898 133712933 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467012 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA10855 nsv7626 10 133724368 133752336 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3909 S 9 0 1 "" NA12878 nsv24626 10 133724750 133724799 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43204 M 24 "" nsv520651 10 133734344 133736319 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv673554,nssv690233,nssv705914 M 2026 2 1 "" nsv832030 10 133756623 133900001 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448830,nssv1448829,nssv1448835,nssv1448843,nssv1448834,nssv1448852,nssv1448831,nssv1448865,nssv1448833,nssv1448832,nssv1448842,nssv1448838,nssv1448836,nssv1448837,nssv1448840,nssv1448841,nssv1448848,nssv1448845,nssv1448844,nssv1448847,nssv1448846,nssv1448849,nssv1448859,nssv1448827,nssv1448855,nssv1448853,nssv1448854,nssv1448864,nssv1448856,nssv1448857,nssv1448858,nssv1448863,nssv1448860,nssv1448861 M 95 0 34 "" nsv523296 10 133804821 133807751 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699036 S 2026 0 1 "" nsv467490 10 133919600 133954851 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542771 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00543 nsv24619 10 133924693 133924693 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43197 M 24 "" dgv121n27 10 134008711 134140516 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv467491,nsv467492 M 1557 0 2 "" NINDS_50,NINDS_60 nsv7627 10 134013678 134038700 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9936,nssv6427,nssv3910 M 9 3 0 "" NA12156,NA12878,NA18507 nsv24519 10 134021932 134022328 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43097 M 24 "" nsv24027 10 134022661 134022661 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv42605 M 24 "" nsv832031 10 134032543 134145535 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448866 S 95 0 1 "" nsv25370 10 134035562 134035645 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43948 M 24 "" nsv467493 10 134041801 134100463 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542774 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01036 dgv326e1 10 134076220 134277057 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv7123,essv5316,essv3956 M 271 0 0 "" NA18537,NA18563,NA18970 nsv509376 10 134136843 134248007 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619808 S 4 1 0 "" NA10860 nsv8745 10 134152032 134155572 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20608 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19144 nsv8747 10 134168012 134170422 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21523,nssv20348,nssv24699,nssv20638,nssv22347,nssv18572,nssv17945,nssv22643,nssv21811,nssv19400,nssv21972,nssv19624,nssv17650,nssv19296,nssv18864,nssv19799,nssv17651,nssv23133,nssv22184,nssv20377 M 31 0 20 Samples from several populations that are part of the HapMap project. "" NA07029,NA10839,NA10847,NA10863,NA11830,NA12155,NA12802,NA12872,NA18502,NA18504,NA18517,NA18853,NA18860,NA18972,NA18975,NA19132,NA19144,NA19173,NA19221,NA19240 nsv25174 10 134169230 134169823 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43752 M 24 "" nsv24857 10 134185816 134185945 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43435 M 24 "" nsv25372 10 134223106 134223167 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43950 M 24 "" nsv24819 10 134241973 134241973 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43397 M 24 "" nsv509377 10 134273479 134337590 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619810 S 4 1 0 "" NA10860 nsv7628 10 134276691 134309494 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6428 S 9 1 0 "" NA12156 nsv832032 10 134312216 134515460 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448867 S 95 0 1 "" nsv509378 10 134401267 134496799 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619813 S 4 1 0 "" NA10860 nsv467496 10 134401721 134466631 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542776 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01029 nsv24809 10 134405163 134405217 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43387 M 24 "" nsv24773 10 134405290 134405344 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43351 M 24 "" nsv832033 10 134407230 134534449 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448872,nssv1448869,nssv1448871,nssv1448874,nssv1448875,nssv1448877,nssv1448876,nssv1448868,nssv1448870 M 95 0 9 "" nsv832034 10 134425035 134603820 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448883,nssv1448879,nssv1448878,nssv1448882,nssv1448881,nssv1448880 M 95 0 6 "" nsv25414 10 134435098 134435687 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43992 M 24 "" nsv25439 10 134435470 134436441 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv44017 M 24 "" esv32864 10 134449360 134449933 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv95284 S 51 1 0 "" 21872 nsv24934 10 134456107 134456283 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43512 M 24 "" nsv527601 10 134457928 134459689 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704063 S 2026 0 1 "" esv2750852 10 134461000 134516414 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6981769,essv6988449 M 771 1 0 "" BEC_466 nsv24232 10 134461703 134461850 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv42810 M 24 "" nsv522491 10 134477872 134483343 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705858 S 2026 0 1 "" essv22058 10 134515692 134683302 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12154 nsv509379 10 134519006 134603748 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619816 S 4 1 0 "" NA10860 nsv528260 10 134522842 135323184 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704827 S 2026 0 1 "" nsv832035 10 134529437 134669886 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448888,nssv1448887,nssv1448886,nssv1448885,nssv1448891,nssv1448889,nssv1448890 M 95 0 7 "" essv22618 10 134542100 134648239 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12154 nsv818788 10 134544675 134641871 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415588 S 112 1 0 "" NA12154 nsv25054 10 134552136 134552236 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43632 M 24 "" nsv24470 10 134559411 134559486 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43048 M 24 "" nsv467498 10 134564475 134836524 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542777 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00745 nsv467499 10 134604287 134651068 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542778 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01289 nsv520220 10 134632814 134633768 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694370 S 2026 1 0 "" nsv7629 10 134643308 134674469 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv975,nssv2853 M 9 2 0 "" NA18555,NA19240 dgv327e1 10 134733303 135014284 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv16910,essv4586,essv10747,essv11234,essv6707,essv4654,essv17302,essv17051,essv20004,essv11180,essv1111,essv2278 M 271 0 0 "" NA07048,NA18523,NA18524,NA18594,NA18608,NA18856,NA18964,NA18966,NA19172,NA19204,NA19205,NA19211 dgv328e1 10 134733303 135111183 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1204,essv7750,essv4355,essv22540,essv7081,essv15214,essv4847,essv1496,essv21665,essv11030,essv18407,essv18640,essv4289,essv7318,essv5415,essv6370,essv1962,essv13472,essv14097,essv15676,essv2349,essv7543,essv3340,essv3758,essv3081,essv3948 M 271 0 0 "" NA07348,NA12234,NA12248,NA12249,NA18537,NA18540,NA18542,NA18545,NA18563,NA18570,NA18573,NA18603,NA18609,NA18861,NA18912,NA18940,NA18945,NA18951,NA18959,NA18961,NA18969,NA18970,NA18980,NA19094,NA19143,NA19192 nsv24506 10 134756425 134756504 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43084 M 24 "" nsv8748 10 134765279 134767477 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17681 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA12872 nsv832036 10 134791894 135070617 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448899,nssv1448900,nssv1448903,nssv1448902,nssv1448904,nssv1448901,nssv1448905,nssv1448898,nssv1448894,nssv1448897,nssv1448896,nssv1448892,nssv1448893 M 95 0 13 "" nsv24013 10 134795133 134795235 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv42591 M 24 "" nsv8749 10 134813181 134817095 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19336,nssv19563,nssv19460,nssv22214 M 31 0 4 Samples from several populations that are part of the HapMap project. "" NA07048,NA18517,NA18552,NA18853 nsv24899 10 134813905 134814072 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43477 M 24 "" nsv7630 10 134836379 134873224 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8871 S 9 0 1 "" NA12156 nsv832038 10 134845981 135023132 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448909,nssv1448908,nssv1448907,nssv1448910,nssv1448911,nssv1448912 M 95 1 5 "" nsv832039 10 134864094 134970049 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448915,nssv1448914,nssv1448913,nssv1448916,nssv1448919,nssv1448918,nssv1448921,nssv1448920,nssv1448922 M 95 0 9 "" dgv2e196 10 134892298 135152926 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array esv2422225,esv2422278 M 181 2 0 "" ND01887,ND04152 essv9566 10 134907049 135293994 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18501 nsv8750 10 134924070 134958872 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19989,nssv22377,nssv22002,nssv21553,nssv19490,nssv20378,nssv18602,nssv19635,nssv24725,nssv19959,nssv19829,nssv19728,nssv18632,nssv19705,nssv19286 M 31 11 2 Samples from several populations that are part of the HapMap project. "" NA07029,NA12155,NA12740,NA18502,NA18504,NA18537,NA18564,NA18853,NA18980,NA19007,NA19132,NA19173,NA19221 nsv516968 10 134941902 134977916 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv674824,nssv676043,nssv653528,nssv696897,nssv658118,nssv661060,nssv666847,nssv653445,nssv681112,nssv656647,nssv651700,nssv689838,nssv684237,nssv676479,nssv696636,nssv655749,nssv692927,nssv679839 M 2026 0 18 "" essv20368 10 134947600 135111183 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA10830 nsv509381 10 134948918 134993379 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619820 S 4 1 0 "" NA10860 dgv122n27 10 134959886 135035595 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv467502,nsv467507,nsv467508,nsv467504 M 1557 0 4 "" 1780862540_A,HGDP00784,HGDP00974,HGDP01251 nsv25127 10 134962768 134962768 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv43705 M 24 "" dgv3e196 10 134968682 135152926 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array esv2422513,esv2422352,esv2422298 M 181 3 0 "" ND01577,ND03123,ND03664 esv2750853 10 134968743 135323432 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6985584,essv6981490,essv6981491,essv6981492 M 771 1 0 "" BEC_280 nsv832040 10 135003945 135115026 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448925,nssv1448924,nssv1448923 M 95 0 3 "" nsv467509 10 135030453 135105351 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542785 S 1557 0 1 "" 1780854339_A nsv8751 10 135032265 135056416 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24751,nssv22032 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA18502,NA19221 nsv527785 10 135046836 135105351 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704276 S 2026 0 1 "" dgv35e55 10 135073000 135323432 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv2750869,esv2750874,esv2750868,esv2750856,esv2750873,esv2750855,esv34689,esv34643,esv2750866,esv2750871,esv2750865,esv2750858,esv34512,esv2750854,esv2750857,esv2750859,esv2750860,esv2750861,esv2750862,esv2750863,esv2750864,esv2750867,esv2750870,esv2750872 M 771 24 0 "" BEC_303,BEC_32,BEC_352,BEC_414,BEC_415,BEC_428,BEC_529,BEC_552,BEC_581,BEC_589,BEC_608,BEC_635,BEC_656,BEC_721,BEC_740,BEC_765,BEC_774,BEC_806,NA12234,NA18515,NA18516,SPC_129,SPC_71,SPC_93 dgv329e1 10 135079451 135293417 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv10491,essv11287,essv17136,essv18593,essv13677,essv15490,essv19852,essv10184,essv9378,essv13815,essv13830,essv9078,essv3322,essv8426,essv228,essv20636,essv25084,essv16066,essv9952 M 271 0 0 "" NA12234,NA12892,NA18501,NA18505,NA18515,NA18516,NA18853,NA18854,NA18948,NA19119,NA19132,NA19171,NA19204 nsv7631 10 135090894 135275499 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv976,nssv8872 M 9 0 2 "" NA12156,NA19240 dgv123n27 10 135091475 135323184 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv467516,nsv467529,nsv467510 M 1557 3 0 "" 1780854574_A,HGDP00812,HGDP00904 nsv832041 10 135092553 135251254 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448926 S 95 1 0 "" nsv517180 10 135105351 135323184 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv687512,nssv682900,nssv661624,nssv698119,nssv657963,nssv663056,nssv672223,nssv690928,nssv687435,nssv692162,nssv680873,nssv668197,nssv672413,nssv705056,nssv667391,nssv655537,nssv660580,nssv681949,nssv690092,nssv687837,nssv666409,nssv658374,nssv667440,nssv678719,nssv686329,nssv662831,nssv687168,nssv658060,nssv653402,nssv678001,nssv670577,nssv680810,nssv657179,nssv664400,nssv683362,nssv686576,nssv652615,nssv671012,nssv653183,nssv680389,nssv675556,nssv654461,nssv682549,nssv689283,nssv678782,nssv684387,nssv687471,nssv654927,nssv681731,nssv656384,nssv696053,nssv655823,nssv678183,nssv693484,nssv660645,nssv653938,nssv691097,nssv660322,nssv698118,nssv653384,nssv691469,nssv684792,nssv666012,nssv662446,nssv664911,nssv659767,nssv682724,nssv659140,nssv703733,nssv703735,nssv653363,nssv693685,nssv686238,nssv679185,nssv690435,nssv683121,nssv654250,nssv676803,nssv668289,nssv662374,nssv681152,nssv675251,nssv657035,nssv676977,nssv664845,nssv691290,nssv658277,nssv705057,nssv677441,nssv658202,nssv676538,nssv675744,nssv705683,nssv692592,nssv675881,nssv677078,nssv689726,nssv681572,nssv686523,nssv659464 M 2026 95 5 "" dgv124n27 10 135106837 135172996 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv467511,nsv467512,nsv467513 M 1557 3 0 "" HGDP00407,HGDP00423,HGDP00433 dgv125n27 10 135106837 135266329 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv467522,nsv467520,nsv467514,nsv467519,nsv467523,nsv467521,nsv467518 M 1557 7 0 "" 1780854418_A,HGDP00388,HGDP00534,HGDP00879,HGDP00881,HGDP01359,NINDS_89 nsv469597 10 135117751 135279389 CNV Gain Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649712 M 265 6 0 Samples from several populations that are part of the HapMap project. "" esv33719 10 135124893 135276714 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101176 S 51 1 0 "" 21618 nsv442593 10 135131758 135185150 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv8752 10 135136044 135395583 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19623,nssv19316,nssv17771,nssv19825,nssv21583,nssv21841,nssv19735,nssv20019,nssv19654,nssv19326,nssv24776,nssv19386,nssv22673,nssv19795,nssv22407,nssv19593,nssv19818,nssv17962,nssv19788,nssv19366,nssv19356,nssv18662,nssv18894,nssv19859,nssv17711,nssv23161,nssv20468,nssv20049,nssv19520,nssv22062,nssv20438,nssv20437 M 31 14 13 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10863,NA11830,NA12155,NA12740,NA12872,NA18502,NA18504,NA18552,NA18564,NA18853,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19173,NA19221,NA19240 dgv330e1 10 135143333 135293994 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv12145,essv15954,essv8501 M 271 0 0 "" NA18505,NA18515,NA18854 dgv126n27 10 135147028 135266329 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv467535,nsv467540,nsv467553,nsv467563,nsv467532,nsv467551,nsv467552,nsv467545,nsv467564,nsv467544,nsv467618,nsv467541,nsv467565,nsv467549,nsv467562,nsv467556,nsv467557,nsv467559,nsv467538,nsv467560,nsv467534,nsv467533,nsv467536,nsv467542,nsv467555,nsv467548,nsv467547,nsv467543,nsv467537,nsv467546,nsv467554 M 1557 31 0 "" 1780862021_A,1780862175_A,HGDP00037,HGDP00062,HGDP00066,HGDP00141,HGDP00456,HGDP00458,HGDP00473,HGDP00602,HGDP00653,HGDP00686,HGDP00713,HGDP00733,HGDP00741,HGDP00768,HGDP00775,HGDP00875,HGDP00891,HGDP00926,HGDP00939,HGDP00976,HGDP01036,HGDP01152,HGDP01247,HGDP01358,NINDS_136,NINDS_155,NINDS_255,NINDS_34,NINDS_49 nsv818790 10 135155270 135266329 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417775,nssv1417909,nssv1416470,nssv1416175,nssv1417908,nssv1416471 M 112 6 0 "" NA12234,NA12892,NA18515,NA18516,NA18853,NA18854 dgv127n27 10 135155270 135323184 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv467606,nsv467602,nsv467604,nsv467607,nsv467601,nsv467624 M 1557 6 0 "" 1780854117_A,1780854260_A,1780854318_A,1780854495_A,1782681495_A,HGDP00791 esv2750875 10 135158836 135277000 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6989354,essv6983229,essv6983230,essv6989759 M 771 0 1 "" BEC_558 dgv36e55 10 135158836 135323432 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv34297,esv2750876,esv2750878,esv34396,esv34260,esv34265,esv34922,esv35167,esv2750877,esv2750879,esv2750880,esv2750881,esv2750882,esv34442 M 771 14 0 "" BEC_366,BEC_405,BEC_551,BEC_576,BEC_631,BEC_820,NA12892,NA18501,NA18505,NA18853,NA18854,NA18948,NA19204,SPC_165 nsv832042 10 135167444 135309273 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448927 S 95 1 0 "" nsv508612 10 135177255 135215005 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617386,nssv618995 M 4 0 2 "" CHM,NA10860 dgv128n27 10 135191913 135291081 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv467622,nsv467623 M 1557 2 0 "" 1780854158_A,HGDP00546 dgv37e55 10 135213790 135323432 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv34818,esv35112,esv34914,esv35006,esv34487,esv34721,esv34810,esv35034 M 771 8 0 "" NA19119,NA19128,NA19130,NA19143,NA19154,NA19171,NA19194,NA19210 nsv442594 10 135217544 135266159 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv331e1 10 135224177 135321566 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv8260,essv11348,essv8583,essv14944,essv8999,essv15160,essv16560,essv14831,essv10501,essv8892 M 271 0 0 "" NA19119,NA19128,NA19130,NA19132,NA19143,NA19153,NA19171,NA19193,NA19194,NA19210 nsv482150 10 135229748 135241501 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558511 S 1 1 0 "" KB1 dgv129n27 10 135240894 135323184 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv467625,nsv467627,nsv467626 M 1557 3 0 "" HGDP00475,HGDP00479,HGDP01261 dgv8n64 10 135240894 135323184 CNV Gain Wang_et_al_2007 17921354 SNP_array nsv818792,nsv818791,nsv818793 M 112 5 0 "" NA19119,NA19143,NA19171,NA19193,NA19194 essv9488 10 135254983 135321566 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19154 nsv482151 10 135256285 135271757 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558512 S 1 1 0 "" KB1 esv35157 10 135259986 135311386 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6980834,essv6980835 M 771 1 0 "" NA19132 esv2750883 10 135289399 135323432 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6984688,essv6989447,essv6990004 M 771 0 1 "" SPC_166 nsv442214 10 135289400 135395585 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv467629 10 135291081 135323184 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542853 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00092 dgv4n31 10 135323001 135408252 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis nsv471481,nsv471488 M 3 "" nsv471357 10 135372560 135380764 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548065,nssv548064,nssv548063 M 3 "" nsv482152 10 135372560 135380764 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558513 S 1 1 0 "" KB1 nsv8753 11 43964 97470 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21613,nssv23189,nssv17929,nssv19684,nssv19665 M 31 2 3 Samples from several populations that are part of the HapMap project. "" NA10839,NA18504,NA18537,NA18572,NA18860 nsv467630 11 188510 214832 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542854 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01365 nsv522596 11 188510 238181 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705986 S 2026 1 0 "" nsv467631 11 188510 264780 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542855 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01371 esv32593 11 208394 275937 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101138,essv94404,essv97845,essv95606,essv95245,essv101700,essv95922,essv94498,essv98941,essv97229,essv96048,essv99710,essv100135 M 51 0 13 "" 21618,21808,21837,21841,21872,21909,21911,21932,21938,22075,22127,22217,22286 nsv7632 11 214495 246679 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6429 S 9 1 0 "" NA12156 nsv527533 11 234106 238016 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703993 S 2026 1 0 "" nsv516439 11 234141 238181 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv691619,nssv680663,nssv668418 M 2026 0 3 "" nsv39512 11 247859 247908 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv58090 M 24 "" nsv7212 11 264155 345146 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5333,nssv1916,nssv977,nssv5332 M 9 0 0 "" NA18555,NA19129,NA19240 nsv482153 11 268570 275303 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558514 S 1 1 0 "" KB1 nsv516809 11 280233 285876 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv679350,nssv671076,nssv657377 M 2026 0 3 "" nsv527327 11 285343 610599 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703752 S 2026 0 1 "" nsv39344 11 316401 316467 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57922 M 24 "" nsv467633 11 356710 422436 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542856 S 1557 0 1 "" 1780862300_A nsv39515 11 388086 388199 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv58093 M 24 "" essv23843 11 399846 1051564 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA07022 nsv8754 11 418832 423899 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23217 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18860 esv32925 11 419474 422036 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97142 S 51 1 0 "" 22075 nsv39748 11 473299 473466 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv58326 M 24 "" nsv39230 11 481643 481643 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57808 M 24 "" nsv467634 11 501805 609789 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542857 S 1557 0 1 "" 1780862487_A esv33673 11 518525 520251 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93322 S 51 1 0 "" 22170 nsv467635 11 547342 646845 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542858 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00445 nsv528415 11 548884 610599 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705007 S 2026 0 1 "" nsv518824 11 554295 595856 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696276 S 2026 0 1 "" nsv7633 11 573216 585582 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2854,nssv3911 M 9 2 0 "" NA12878,NA18555 nsv832043 11 621027 748602 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448930,nssv1448931,nssv1448929 M 95 0 3 "" nsv522733 11 692250 742059 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698367 S 2026 0 1 "" nsv8755 11 712390 714601 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21643 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18504 esv33757 11 713475 717720 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93594 S 51 1 0 "" 21972 nsv8756 11 723363 736926 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22467 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19132 nsv39252 11 725444 725764 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57830 M 24 "" esv33310 11 732745 734077 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv96033 S 51 0 1 "" 22127 nsv517091 11 733813 734185 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv657770,nssv678721,nssv671221,nssv689913,nssv684346,nssv688924,nssv676142,nssv690387,nssv685553,nssv661399,nssv669495,nssv654664,nssv653771 M 2026 0 13 "" nsv8758 11 754327 762031 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22497 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19132 esv32621 11 755283 756514 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98964 S 51 1 0 "" 21938 essv11734 11 764447 1051564 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18504 nsv8759 11 765539 825248 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24801 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19221 nsv832044 11 799019 928308 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448945,nssv1448935,nssv1448940,nssv1448934,nssv1448933,nssv1448932,nssv1448943,nssv1448938,nssv1448936,nssv1448937,nssv1448944,nssv1448942,nssv1448941 M 95 0 13 "" nsv482154 11 817585 821991 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558515 S 1 1 0 "" KB1 nsv8760 11 830951 842059 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21673,nssv19695 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18504,NA18537 esv32950 11 867601 872764 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97108 S 51 1 0 "" 22075 dgv332e1 11 872364 1051564 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv20416,essv24468,essv8856,essv681,essv10567,essv1881,essv16114,essv272,essv14551,essv9413,essv11213,essv20255,essv15409,essv7043,essv7787,essv22885,essv24248,essv3467,essv8305,essv3864,essv22758,essv1274,essv16531,essv10739,essv1769,essv7212,essv22047,essv22130,essv8741,essv19614,essv4659,essv15261,essv10018,essv23208,essv7088,essv12158,essv7616,essv6655,essv4559,essv21005,essv9717,essv7867,essv17098,essv9197,essv15148,essv10868,essv24755,essv15798,essv15558,essv3055,essv4417,essv18390,essv14192,essv12798,essv16731,essv4137,essv11082,essv6041,essv17622,essv22956,essv8605,essv21979,essv9938,essv112,essv5022,essv20131,essv21736,essv1007,essv8917,essv23974,essv14447,essv20067,essv14323,essv22682,essv24040,essv23374,essv11515,essv6234,essv4971,essv13099,essv20957,essv17672,essv9330,essv858,essv804,essv13843,essv1926,essv13461,essv20158,essv22487,essv10651,essv7720,essv6644,essv19235,essv24366,essv6355,essv11444,essv8350,essv19914,essv25005,essv24559,essv23497,essv14112,essv15352,essv18155,essv21121,essv9829,essv23821,essv19573,essv19161,essv5137,essv24733,essv15012,essv17116,essv5411,essv18338,essv16760,essv11045,essv15682,essv21544,essv17812,essv12763,essv17973,essv2345,essv20627,essv1449,essv18265,essv6819,essv16856,essv21314,essv21443,essv23118,essv253,essv20661,essv24126,essv21779,essv13539,essv1196,essv12674,essv16231,essv488,essv11673,essv18932,essv1486,essv4488,essv15999,essv2164,essv17737,essv3764,essv23627,essv1099,essv3544,essv20335,essv2244,essv2635,essv15489,essv19763,essv3132,essv22241,essv4807,essv4019,essv390,essv10272 M 271 0 0 "" NA06991,NA07019,NA07034,NA07048,NA07056,NA07345,NA07357,NA10830,NA10831,NA10835,NA10838,NA10839,NA10846,NA10847,NA10856,NA10857,NA10859,NA10860,NA11829,NA11832,NA11881,NA11882,NA11992,NA11993,NA11994,NA11995,NA12003,NA12005,NA12006,NA12044,NA12056,NA12144,NA12154,NA12155,NA12156,NA12236,NA12239,NA12248,NA12249,NA12707,NA12716,NA12717,NA12750,NA12752,NA12753,NA12760,NA12763,NA12801,NA12813,NA12815,NA12864,NA12865,NA12872,NA12873,NA12878,NA12891,NA12892,NA18500,NA18501,NA18505,NA18506,NA18508,NA18523,NA18524,NA18537,NA18542,NA18545,NA18547,NA18552,NA18555,NA18558,NA18563,NA18564,NA18571,NA18573,NA18576,NA18579,NA18594,NA18608,NA18609,NA18612,NA18620,NA18621,NA18633,NA18636,NA18637,NA18852,NA18853,NA18854,NA18855,NA18857,NA18858,NA18861,NA18862,NA18863,NA18870,NA18871,NA18872,NA18912,NA18913,NA18914,NA18940,NA18944,NA18948,NA18951,NA18952,NA18959,NA18960,NA18961,NA18964,NA18965,NA18966,NA18967,NA18968,NA18969,NA18970,NA18971,NA18973,NA18975,NA18976,NA18978,NA18980,NA18981,NA18992,NA18994,NA18995,NA18997,NA19000,NA19005,NA19092,NA19094,NA19099,NA19100,NA19101,NA19103,NA19120,NA19128,NA19129,NA19131,NA19137,NA19140,NA19142,NA19143,NA19145,NA19154,NA19160,NA19161,NA19171,NA19172,NA19173,NA19192,NA19194,NA19200,NA19201,NA19202,NA19203,NA19204,NA19205,NA19208,NA19210,NA19211,NA19239,NA19240 essv22587 11 872364 1313968 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA07348 esv32976 11 911843 914353 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93887 S 51 0 1 "" 21634 nsv7635 11 944928 948292 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10788 S 9 1 0 "" NA18956 nsv7636 11 950197 971120 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5334,nssv6430 M 9 2 0 "" NA12156,NA19129 nsv832045 11 959785 1119167 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448958,nssv1448964,nssv1448946,nssv1448959,nssv1448960,nssv1448963,nssv1448948,nssv1448952,nssv1448949,nssv1448947,nssv1448951,nssv1448954,nssv1448957,nssv1448953,nssv1448956,nssv1448955 M 95 1 15 "" nsv8761 11 969333 973986 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21703,nssv19725,nssv20109,nssv19653,nssv22244,nssv17680,nssv18692 M 31 7 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA12740,NA12802,NA18504,NA18517,NA18537 nsv7637 11 986222 1019656 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9937,nssv10789,nssv11246,nssv978,nssv3913,nssv6431,nssv1917,nssv5335 M 9 8 0 "" NA12156,NA12878,NA15510,NA18507,NA18555,NA18956,NA19129,NA19240 nsv482155 11 1002824 1026706 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558516 S 1 1 0 "" KB1 nsv59 11 1005059 1015203 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv59 S 1 1 0 "" NA15510 nsv8762 11 1048209 1050729 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21733,nssv22274 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18504,NA18517 nsv60 11 1057274 1084617 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv60 S 1 1 0 "" NA15510 nsv7638 11 1057274 1095129 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6433,nssv3914,nssv9938,nssv979,nssv10790,nssv11247,nssv5336 M 9 7 0 "" NA12156,NA12878,NA15510,NA18507,NA18956,NA19129,NA19240 nsv518205 11 1064401 1073946 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695629 S 2026 0 1 "" nsv39410 11 1068765 1069027 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57988 M 24 "" nsv8763 11 1186024 1241328 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24826 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19221 nsv524071 11 1193003 1214035 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699939 S 2026 0 1 "" nsv467637 11 1220352 1311280 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542859 S 1557 0 1 "" 1782681313_A nsv818794 11 1270604 1280140 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417745 S 112 0 1 "" NA19003 nsv39591 11 1271917 1272007 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv58169 M 24 "" nsv467641 11 1311280 1354595 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542861 S 1557 0 1 "" 1780862067_A dgv10n68 11 1341557 1478016 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH nsv832046,nsv832047 M 95 0 15 "" nsv467642 11 1361414 1405949 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542862 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01351 nsv38732 11 1382797 1382797 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57310 M 24 "" nsv39243 11 1387711 1387793 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57821 M 24 "" nsv7639 11 1405813 1426296 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1918 S 9 0 1 "" NA18555 nsv7640 11 1495028 1531489 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1919,nssv6434,nssv9939,nssv3915,nssv10791,nssv5337 M 9 6 0 "" NA12156,NA12878,NA18507,NA18555,NA18956,NA19129 nsv7641 11 1536652 1539279 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv980 S 9 1 0 "" NA19240 nsv517817 11 1588756 1598225 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695222 S 2026 0 1 "" nsv467643 11 1594620 1606840 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542863 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00771 nsv467644 11 1596600 1619112 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542864 S 1557 0 1 "" NINDS_3 nsv38977 11 1619531 1620111 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57555 M 24 "" nsv832049 11 1647729 1795184 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448981,nssv1448982 M 95 0 2 "" nsv467645 11 1710976 2396343 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542865 S 1557 1 0 "" 1780854483_A nsv7642 11 1727208 1762234 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8874,nssv2855 M 9 2 0 "" NA12156,NA18555 nsv522320 11 1813688 1974744 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695100 S 2026 0 1 "" nsv467647 11 1813846 1865582 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542866 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00971 nsv467648 11 1830980 1869302 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542867 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01339 nsv7643 11 1845532 1905501 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6435,nssv981,nssv3916,nssv9812,nssv5338,nssv10883,nssv9265,nssv1920 M 9 0 8 "" NA12156,NA12878,NA15510,NA18507,NA18517,NA18555,NA19129,NA19240 nsv61 11 1855962 1897796 CNV Loss Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv61 S 1 0 1 "" NA15510 nsv7213 11 1856836 1956635 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5339,nssv984,nssv6436,nssv10792,nssv9813,nssv1921,nssv10884,nssv982,nssv10793,nssv6437,nssv9266,nssv5341,nssv3917,nssv1922 M 9 0 0 "" NA12156,NA12878,NA15510,NA18507,NA18517,NA18555,NA18956,NA19129,NA19240 nsv39720 11 1859414 1859414 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv58298 M 24 "" nsv518858 11 1884793 1895099 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696312 S 2026 0 1 "" nsv62 11 1886737 1939055 OTHER Inversion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv62 S 1 0 0 "" NA15510 nsv516622 11 1905537 1971285 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697756,nssv680624,nssv669619 M 2026 0 3 "" nsv7644 11 1909619 1922464 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv985,nssv10885,nssv3918,nssv5342 M 9 4 0 "" NA12878,NA15510,NA19129,NA19240 nsv63 11 1915678 1918633 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv63 S 1 1 0 "" NA15510 nsv39683 11 1919467 1919645 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv58261 M 24 "" nsv38484 11 1954311 1954382 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57062 M 24 "" nsv39224 11 1983468 1983584 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57802 M 24 "" esv33281 11 2021347 2048176 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv94491,essv96718 M 51 0 2 "" 21932,22011 nsv526035 11 2022607 2032619 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702266 S 2026 0 1 "" nsv467649 11 2022607 2052375 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542868 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00790 nsv527587 11 2025293 2031152 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704048 S 2026 0 1 "" nsv39326 11 2165732 2165732 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57904 M 24 "" nsv467651 11 2267728 2279238 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542870 S 1557 0 1 "" NINDS_173 nsv509382 11 2353956 2417001 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623803,nssv619822 M 4 2 0 "" NA10860,NA18994 nsv509383 11 2453855 2578920 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619825 S 4 1 0 "" NA10860 nsv525578 11 2454077 2455754 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701717 S 2026 1 0 "" nsv39120 11 2530638 2530700 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57698 M 24 "" nsv517065 11 2587055 2637391 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv653718,nssv663662,nssv656913,nssv663369,nssv691448,nssv665381,nssv665007,nssv685634,nssv682482,nssv665553 M 2026 10 0 "" nsv467652 11 2668862 2695686 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542871 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00433 nsv7647 11 2713222 2747013 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv986 S 9 1 0 "" NA19240 nsv525453 11 2742199 2743637 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701581 S 2026 0 1 "" nsv526036 11 2742199 2745492 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702267 S 2026 0 1 "" dgv333e1 11 2745620 2920188 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv24514,essv23940 M 271 0 0 "" NA12802,NA12814 nsv8764 11 2809675 2820982 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22122 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18502 nsv8765 11 2839011 2849256 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17959,nssv22702,nssv19446,nssv19683,nssv22304,nssv17975,nssv20467,nssv18722,nssv19550,nssv17801,nssv20498,nssv21871,nssv20147,nssv18924,nssv19396,nssv20139,nssv19889,nssv21793 M 31 15 3 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10847,NA10863,NA11830,NA12155,NA12740,NA12872,NA18504,NA18517,NA18552,NA18563,NA18572,NA18853,NA18972,NA18975,NA19173,NA19240 nsv467655 11 2842304 2869522 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542872 S 1557 0 1 "" NINDS_69 nsv832050 11 2846346 2941793 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448994,nssv1448983,nssv1448987,nssv1448986,nssv1448985,nssv1448988,nssv1448989,nssv1448999,nssv1448996,nssv1448997,nssv1448991,nssv1448998,nssv1448993,nssv1448990,nssv1448992 M 95 0 15 "" nsv467657 11 2856994 2894207 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542873 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00776 nsv467658 11 2880402 2902521 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542874 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00950 nsv39524 11 2915707 2915707 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv58102 M 24 "" nsv7648 11 2922873 2954101 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6438 S 9 1 0 "" NA12156 nsv8766 11 2949255 3183762 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18005,nssv19919,nssv19580,nssv19713,nssv22334,nssv18782,nssv24851,nssv22527,nssv21901,nssv21823 M 31 0 10 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10847,NA18504,NA18517,NA18853,NA19132,NA19173,NA19221,NA19240 nsv509384 11 3066541 3167179 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619830,nssv619837 M 4 1 0 "" NA10860 nsv519468 11 3123753 3125114 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696869 S 2026 0 1 "" nsv7649 11 3188850 3340481 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10794,nssv3920,nssv1923,nssv10795,nssv9814,nssv5343,nssv987,nssv6439,nssv1924,nssv3919 M 9 0 7 "" NA12156,NA12878,NA18507,NA18555,NA18956,NA19129,NA19240 nsv524468 11 3189920 3199943 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700405 S 2026 0 1 "" dgv334e1 11 3193088 3319687 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv21528,essv24259,essv17300,essv24042,essv12702,essv21167,essv19275,essv17671,essv23535,essv22835,essv22065 M 271 0 0 "" NA06993,NA10838,NA10856,NA10859,NA11830,NA11881,NA12004,NA12154,NA12873,NA18856,NA18914 dgv335e1 11 3193088 3376156 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv16413,essv9898,essv12839,essv13735,essv16880,essv17093,essv10166,essv11265,essv9711,essv15583,essv15516 M 271 0 0 "" NA18505,NA18913,NA19119,NA19120,NA19130,NA19137,NA19139,NA19145,NA19172,NA19204,NA19205 dgv336e1 11 3193088 3656689 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv9056,essv11023,essv21043 M 271 0 0 "" NA06991,NA19132,NA19143 esv33102 11 3196897 3199390 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv95119,essv101707 M 51 0 2 "" 21721,21909 nsv517153 11 3198799 3199943 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv658653,nssv686974,nssv660952,nssv670992,nssv693427,nssv657526,nssv661398,nssv654771,nssv690931,nssv693027,nssv668330,nssv678413,nssv653880,nssv669467,nssv685029,nssv686735,nssv691896,nssv671168,nssv684541,nssv676371,nssv662420,nssv664391,nssv675050,nssv690175,nssv691935,nssv658292,nssv675400,nssv663182,nssv691579,nssv673665,nssv676654,nssv684729,nssv686525 M 2026 0 33 "" nsv523703 11 3198799 3210432 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699511 S 2026 0 1 "" nsv8767 11 3198820 3201071 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17831 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA12872 nsv8770 11 3213200 3316441 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18035,nssv19476,nssv22557,nssv22364,nssv20668,nssv20497 M 31 2 4 Samples from several populations that are part of the HapMap project. "" NA10847,NA10863,NA11830,NA18517,NA19132,NA19144 nsv526641 11 3214412 3222527 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702966 S 2026 1 0 "" nsv508613 11 3238128 3300541 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619006,nssv617387,nssv620164,nssv622780 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv8771 11 3339024 3348433 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22152,nssv21931 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18502,NA19240 nsv7650 11 3350546 3361343 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2856 S 9 1 0 "" NA18555 essv5764 11 3376078 3569739 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18540 essv23732 11 3456074 3569172 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12813 nsv832051 11 3480523 3685290 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449000 S 95 1 0 "" essv2992 11 3483885 3656689 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18981 nsv467660 11 3524620 3617490 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542875 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00108 nsv8772 11 3559279 3562548 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22394 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18517 dgv337e1 11 3573460 3758005 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv839,essv3227,essv11657,essv3039,essv1729,essv24889,essv22035,essv14275,essv11182,essv6160,essv7078,essv15237,essv12859,essv15769,essv6749,essv10785,essv12340,essv14170,essv14796,essv7019,essv1219,essv20407,essv13746,essv22645,essv6651,essv11847,essv5313,essv5043,essv6615,essv10006,essv8089,essv6280,essv22448,essv20916,essv4949,essv13654,essv13894,essv19234,essv17297,essv11588,essv23876,essv15326,essv20325,essv16283,essv18108,essv10863,essv5738,essv14868,essv16786,essv10265,essv17085,essv16909,essv3420,essv20645,essv2005,essv4709,essv9450,essv12690,essv15994,essv1958,essv2193,essv7832,essv11246,essv1143,essv10378,essv16486,essv23455,essv11751,essv12188,essv15451,essv3086,essv5211 M 271 0 0 "" NA07000,NA10830,NA10838,NA10854,NA11993,NA12154,NA12236,NA12752,NA12761,NA12801,NA12814,NA12892,NA18500,NA18501,NA18504,NA18505,NA18506,NA18522,NA18523,NA18532,NA18537,NA18558,NA18562,NA18563,NA18576,NA18593,NA18608,NA18611,NA18612,NA18621,NA18622,NA18636,NA18637,NA18854,NA18856,NA18862,NA18871,NA18872,NA18945,NA18949,NA18959,NA18960,NA18964,NA18969,NA18973,NA18974,NA18981,NA18995,NA18997,NA19094,NA19099,NA19101,NA19120,NA19127,NA19131,NA19138,NA19140,NA19153,NA19154,NA19159,NA19161,NA19172,NA19173,NA19194,NA19204,NA19205,NA19206,NA19208,NA19210,NA19211,NA19221,NA19222 nsv832052 11 3573460 3758005 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449001 S 95 0 1 "" nsv526441 11 3582753 3713262 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702744 S 2026 1 0 "" nsv8773 11 3585997 3589200 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19855 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18980 nsv8774 11 3596097 3602505 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22587,nssv24876,nssv22182 M 31 3 0 Samples from several populations that are part of the HapMap project. "" NA18502,NA19132,NA19221 nsv520492 11 3601633 3601921 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv691746,nssv691969,nssv671866 M 2026 3 0 "" nsv509385 11 3611764 3634787 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623808,nssv621131 M 4 2 0 "" NA15510,NA18994 nsv8775 11 3619588 3621443 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18812 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA07029 nsv8776 11 3625722 3632996 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19848,nssv18125,nssv17992,nssv22212,nssv19346,nssv19456,nssv22454,nssv20528,nssv17989,nssv20169,nssv20698,nssv23245,nssv19610,nssv22617,nssv19714,nssv24931,nssv19949,nssv18954,nssv20177,nssv17861,nssv21853,nssv18842,nssv20527,nssv19785,nssv19506 M 31 3 22 Samples from several populations that are part of the HapMap project. "" NA07029,NA10839,NA10847,NA10863,NA11830,NA12155,NA12740,NA12872,NA18502,NA18504,NA18517,NA18537,NA18552,NA18563,NA18564,NA18572,NA18853,NA18860,NA18942,NA18975,NA19007,NA19132,NA19144,NA19173,NA19221 nsv482156 11 3643393 3649190 CNV Loss Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558517 S 1 0 1 "" KB1 nsv528141 11 3674705 3678880 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704687 S 2026 0 1 "" nsv522040 11 3890140 3894961 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694121 S 2026 0 1 "" essv17026 11 4012521 4399615 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19144 nsv832053 11 4053103 4286839 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449002 S 95 1 0 "" nsv8777 11 4116529 4343844 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22484,nssv20259,nssv22242,nssv19406,nssv20788,nssv19376,nssv19773,nssv21913,nssv21883,nssv20558,nssv19803,nssv20199,nssv22731,nssv21961,nssv20229,nssv20728 M 31 9 1 Samples from several populations that are part of the HapMap project. "" NA07048,NA12155,NA12740,NA18502,NA18504,NA18517,NA18972,NA19007,NA19144,NA19240 esv34983 11 4119050 4282368 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6988332,essv6980916,essv6980915,essv6985433 M 771 1 0 "" NA19144 essv9865 11 4119053 4282368 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19144 nsv818795 11 4123992 4195506 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418180 S 112 1 0 "" NA19144 nsv467662 11 4142171 4228919 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542877 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01339 nsv469627 11 4143557 4293066 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649552 M 265 4 9 Samples from several populations that are part of the HapMap project. "" nsv471670 11 4143558 4293066 CNV Gain+Loss Sharp et al 2005 15918152 BAC_aCGH,FISH Eichler Segmental Duplication BAC array nssv549618,nssv549621,nssv549620,nssv549617,nssv549619 M 48 3 2 "" JK1688,NA10469,NA10473,NA17015,NA17051 nsv467663 11 4144764 4195506 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542878 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01086 essv11441 11 4177792 4272708 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18857 dgv338e1 11 4177792 4466764 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv15844,essv3090,essv561,essv118,essv2235,essv10764,essv13724,essv16452,essv8735,essv6195,essv12299,essv15287,essv7065,essv10072,essv6580,essv15386,essv5924,essv8470,essv12810,essv4490,essv8218,essv10409,essv21285,essv2789,essv9164,essv8602,essv8786,essv14297,essv874,essv7002,essv17056,essv11973,essv4842,essv6239,essv12398,essv6688,essv13077,essv1411,essv10626,essv17303,essv12237,essv8332,essv1793,essv14088,essv16706,essv12730,essv14965,essv10529,essv16892,essv10837,essv16807,essv9705,essv19391,essv17108,essv5115,essv3365,essv235,essv16259,essv12673,essv2872,essv11939,essv24228,essv3566,essv17265,essv15470,essv23408,essv323 M 271 0 0 "" NA10854,NA10855,NA10856,NA11840,NA18500,NA18502,NA18503,NA18505,NA18508,NA18516,NA18517,NA18523,NA18532,NA18537,NA18540,NA18550,NA18552,NA18577,NA18608,NA18612,NA18621,NA18636,NA18852,NA18855,NA18856,NA18858,NA18861,NA18870,NA18871,NA18872,NA18913,NA18914,NA18945,NA18948,NA18953,NA18965,NA18966,NA18968,NA18969,NA18971,NA18987,NA18997,NA18998,NA19000,NA19007,NA19092,NA19094,NA19099,NA19101,NA19116,NA19119,NA19120,NA19128,NA19138,NA19139,NA19142,NA19161,NA19171,NA19172,NA19194,NA19203,NA19205,NA19222,NA19223,NA19238,NA19239,NA19240 nsv442595 11 4206589 4293105 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv7214 11 4220793 4322148 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9815,nssv5344,nssv988,nssv10797,nssv6440,nssv9940,nssv9267,nssv5345,nssv9268,nssv6441,nssv10796,nssv3921 M 9 0 0 "" NA12156,NA12878,NA18507,NA18517,NA18956,NA19129,NA19240 nsv509386 11 4239038 4259154 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618084 S 4 1 0 "" CHM nsv510995 11 4240084 4283348 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622429,nssv621659,nssv624366 M 4 0 0 "" NA10860,NA15510,NA18994 nsv832054 11 4247183 4438051 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449003 S 95 1 0 "" nsv469800 11 4290117 4430917 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649821 M 265 3 2 Samples from several populations that are part of the HapMap project. "" nsv467664 11 4397414 4433275 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542879 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00542 dgv55n21 11 4433275 4496653 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv521561,nsv523709 M 2026 0 2 "" nsv442215 11 4466713 4518969 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv38e55 11 4466860 4518970 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv34568,esv34864 M 771 0 2 "" NA18566,NA18624 dgv339e1 11 4466861 4519034 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv6549,essv4540 M 271 0 0 "" NA18566,NA18624 nsv8778 11 4489484 4490888 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19774 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA10839 esv2751024 11 4491897 4535290 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6989429,essv6984420,essv6989959,essv6984421 M 771 0 1 "" BEC_705 nsv8779 11 4497766 4516077 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24956 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19221 nsv832055 11 4507470 4692916 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449005,nssv1449004 M 95 0 2 "" nsv519327 11 4543829 4548853 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv691936,nssv655423,nssv688952 M 2026 0 3 "" nsv832056 11 4629577 4781466 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449007 S 95 1 0 "" nsv524796 11 4638952 4643814 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700788 S 2026 0 1 "" nsv521245 11 4646318 4649555 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv689661,nssv688216 M 2026 2 0 "" nsv437699 11 4677780 4698530 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467580 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18914 nsv38547 11 4759098 4759408 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57125 M 24 "" nsv515643 11 4763448 4768509 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv679794,nssv664213 M 2026 0 2 "" nsv467666 11 4771924 4873665 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542880 S 1557 0 1 "" 1780854058_A nsv7651 11 4803384 4865620 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1925,nssv5346 M 9 2 0 "" NA18555,NA19129 nsv528215 11 4828082 4842869 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704776 S 2026 0 1 "" dgv340e1 11 4864469 5091907 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv316,essv21853 M 271 0 0 "" NA11839,NA18971 nsv8781 11 4873319 4877887 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24981 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19221 nsv521088 11 4882509 4885442 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697780 S 2026 0 1 "" nsv507580 11 4890965 4896965 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619273 S 4 1 0 "" NA10860 nsv7652 11 4902821 4954345 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3922,nssv10799,nssv1926,nssv6443,nssv10886 M 9 0 5 "" NA12156,NA12878,NA15510,NA18555,NA18956 nsv526998 11 4911183 5030877 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703373 S 2026 0 1 "" nsv64 11 4915812 4941949 CNV Loss Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv64 S 1 0 1 "" NA15510 essv16563 11 4918489 4948858 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19193 nsv508614 11 4918855 4927901 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619012 S 4 0 1 "" NA10860 nsv510996 11 4918855 4927901 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618617 S 4 0 0 "" CHM nsv8782 11 4923827 4936482 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19885,nssv20289,nssv21943,nssv21991,nssv20557,nssv18019,nssv25006,nssv18022,nssv19804,nssv21973,nssv18872,nssv19466,nssv19486,nssv18155,nssv19979,nssv22514,nssv22647 M 31 4 12 Samples from several populations that are part of the HapMap project. "" NA07029,NA10839,NA10847,NA11830,NA12740,NA18504,NA18517,NA18552,NA18572,NA18942,NA18980,NA19007,NA19132,NA19173,NA19221,NA19240 nsv471358 11 4923967 4924906 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548068,nssv548066 M 3 "" nsv7653 11 4924359 4950544 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv989 S 9 1 0 "" NA19240 nsv442596 11 4924689 4933658 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" esv33631 11 4924967 4932228 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101455,essv98852,essv97520,essv100848,essv98328,essv94123,essv97851,essv95517,essv93147,essv101740,essv92923,essv92793,essv93640,essv96182,essv96683,essv98629,essv95975,essv93420,essv99609,essv94876,essv92534,essv98123,essv100592,essv100383,essv99559,essv98347 M 51 21 5 "" 21603,21606,21616,21656,21772,21802,21837,21847,21863,21909,21939,21944,21972,22007,22011,22085,22127,22128,22217,22231,22233,22259,22298,22300,22335,22352 nsv471359 11 4932580 4933519 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548070,nssv548069 M 3 "" nsv438182 11 4932653 4933344 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470320,nssv470322,nssv470324,nssv470323,nssv470325,nssv470321 M 269 0 6 Samples from several populations that are part of the HapMap project. "" NA18912,NA18914,NA19099,NA19100,NA19102,NA19103 nsv510237 11 4970132 4976132 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618334 S 4 0 1 "" CHM esv33877 11 4977712 4985160 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99412 S 51 1 0 "" 22335 esv33513 11 4991194 4991449 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97890,essv97252 M 51 2 0 "" 21837,22075 nsv515951 11 5017517 5029677 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv663514,nssv665430,nssv675253,nssv655784 M 2026 0 4 "" nsv525123 11 5035457 5035929 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701191 S 2026 0 1 "" esv2422503 11 5043868 5082567 CNV Deletion Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161320 S 181 0 1 "" ND04531 nsv467667 11 5048209 5078366 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542881 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00580 dgv18n6 11 5063541 5063791 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv38600,nsv39269 M 24 "" nsv523914 11 5163965 5188141 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699757 S 2026 0 1 "" nsv526212 11 5212488 5217950 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702476 S 2026 0 1 "" nsv518156 11 5228247 5230117 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695577 S 2026 0 1 "" nsv524290 11 5228247 5230117 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700190 S 2026 1 0 "" nsv442216 11 5228251 5230232 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv523347 11 5265304 5266271 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699096 S 2026 0 1 "" nsv524400 11 5284937 5373198 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700318 S 2026 0 1 "" dgv56n21 11 5329827 5330138 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv521732,nsv525848 M 2026 0 2 "" nsv832057 11 5332161 5532776 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449008 S 95 0 1 "" essv3627 11 5373198 5448609 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18966 esv34391 11 5388560 5449885 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6989152,essv6987727,essv6980165,essv6980164,essv6980163 M 771 0 1 "" NA18966 nsv521722 11 5440401 5444172 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694482 S 2026 1 0 "" nsv467669 11 5444172 5454375 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542882 S 1557 1 0 "" 1780854129_A nsv471745 11 5478227 5480332 CNV Loss Hinds et al 2006 16327809 Oligo_aCGH,PCR Custom Perlegen arrays nssv646026 M 0.439 95 "" nsv442597 11 5478747 5480169 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv510997 11 5479191 5531951 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622433 S 4 0 0 "" NA10860 nsv510238 11 5500381 5506381 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618335 S 4 0 1 "" CHM nsv507581 11 5511418 5517418 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617809 S 4 1 0 "" CHM nsv471746 11 5579804 5580758 CNV Loss Hinds et al 2006 16327809 Oligo_aCGH,PCR Custom Perlegen arrays nssv646027 M 0.021 95 "" nsv39158 11 5635464 5635464 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57736 M 24 "" dgv341e1 11 5686953 5927293 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv10556,essv9640,essv6178,essv15337,essv15837 M 271 0 0 "" NA18532,NA18862,NA19141,NA19223,NA19240 nsv832058 11 5704170 5883390 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449009,nssv1449010 M 95 2 0 "" nsv8783 11 5716660 5725487 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22790,nssv20587,nssv20009,nssv22003,nssv19833,nssv22544,nssv19516,nssv19496,nssv22021,nssv18052,nssv23273,nssv17710,nssv18984,nssv18049,nssv18902,nssv22272,nssv20818,nssv20319,nssv22677,nssv17891,nssv20588,nssv19915,nssv19536,nssv19640,nssv18185 M 31 25 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10847,NA10863,NA11830,NA12155,NA12740,NA12802,NA12872,NA18502,NA18504,NA18517,NA18552,NA18572,NA18853,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19144,NA19173,NA19240 esv33854 11 5716929 5718946 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93800,essv96833,essv100955,essv95127,essv94827,essv94076,essv94448,essv96888,essv97915,essv95658,essv95477,essv93154,essv95382,essv95854,essv94545,essv99051,essv93741,essv96217,essv97230,essv100110,essv95983,essv93345,essv99700,essv95038,essv98078,essv97625,essv100235,essv100617,essv96295 M 51 25 4 "" 21634,21659,21693,21721,21791,21802,21808,21817,21837,21841,21847,21863,21872,21911,21932,21938,21972,22007,22075,22086,22127,22170,22217,22231,22259,22278,22286,22298,22371 esv33342 11 5726946 5741060 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100647 S 51 0 1 "" 21656 dgv342e1 11 5733199 5783893 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv8585,essv23325,essv8039,essv14949,essv13261,essv11395,essv24164,essv23729,essv8028,essv19333,essv5973,essv19869,essv13963 M 271 0 0 "" NA12234,NA12264,NA12751,NA12813,NA12872,NA18552,NA18871,NA19103,NA19130,NA19132,NA19160,NA19192,NA19201 nsv519652 11 5733786 5762091 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv673000,nssv677052,nssv657379,nssv681866 M 2026 0 4 "" nsv65 11 5738669 5768809 CNV Loss Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv65 S 1 0 1 "" NA15510 nsv7654 11 5738669 5782776 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10887,nssv9816,nssv5347 M 9 0 3 "" NA15510,NA18507,NA19129 nsv508616 11 5739550 5765325 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620166 S 4 0 1 "" NA15510 dgv5n31 11 5740001 5765881 CNV Deletion Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis nsv471529,nsv471531 M 3 "" nsv8784 11 5741059 5766354 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19878,nssv22819,nssv20848,nssv17770,nssv22033,nssv19670,nssv19546,nssv23301,nssv18932,nssv19526,nssv22051,nssv19863,nssv19834,nssv18215,nssv22706,nssv22574,nssv20618,nssv20349,nssv18142,nssv20617,nssv19815,nssv17921,nssv20039,nssv20207,nssv19566,nssv18139,nssv19945,nssv19014,nssv22302,nssv25031 M 31 29 1 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10847,NA10863,NA11830,NA12155,NA12740,NA12802,NA12872,NA18502,NA18504,NA18517,NA18537,NA18552,NA18563,NA18564,NA18572,NA18853,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19144,NA19173,NA19221,NA19240 esv33544 11 5741060 5765963 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101446,essv98795,essv97561,essv101245,essv93918,essv100805,essv96773,essv100920,essv98147,essv93983,essv101284,essv94352,essv96939,essv97918,essv95616,essv95550,essv93174,essv95369,essv97352,essv101690,essv95808,essv94573,essv99085,essv92977,essv92688,essv93598,essv96148,essv96588,essv97246,essv98621,essv99962,essv95957,essv93548,essv93272,essv99610,essv94880,essv92576,essv98127,essv96434,essv99271,essv97757,essv100125,essv99525,essv98483,essv96261,essv94183 M 51 45 1 "" 21603,21606,21616,21618,21634,21656,21659,21693,21772,21802,21805,21808,21817,21837,21841,21847,21863,21872,21879,21909,21911,21932,21938,21939,21944,21972,22007,22011,22075,22085,22086,22127,22128,22170,22217,22231,22233,22259,22261,22275,22278,22286,22335,22352,22371,22394 nsv433514 11 5741599 5755246 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463395 S 9 0 1 "" NA15510 dgv343e1 11 5743360 5765806 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv5672,essv4209,essv8657,essv7659,essv20709,essv5072,essv19143,essv13378,essv5891,essv13410,essv20539,essv23710,essv18579 M 271 0 0 "" NA10851,NA11995,NA12740,NA12752,NA12812,NA18570,NA18576,NA18605,NA18609,NA18632,NA18872,NA19101,NA19159 dgv344e1 11 5743360 5776193 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv18676,essv2392,essv1072,essv24215,essv2367,essv17408,essv102,essv14001,essv21591,essv10506,essv6092,essv11352,essv9280,essv15965,essv22731,essv21572,essv21104,essv14674,essv12431,essv6788,essv25151,essv19481,essv17384,essv21904,essv6514,essv21922,essv14901,essv23755,essv24640,essv727,essv16377,essv20504,essv18891,essv5962,essv7991,essv2429,essv8074,essv21639,essv2112,essv25185,essv2960 M 271 0 0 "" NA10838,NA10846,NA10854,NA11839,NA11840,NA11994,NA12056,NA12057,NA12144,NA12146,NA12155,NA12239,NA12717,NA12750,NA12760,NA12761,NA12874,NA18572,NA18577,NA18594,NA18621,NA18855,NA18940,NA18951,NA18959,NA18972,NA18976,NA18990,NA18995,NA19005,NA19128,NA19129,NA19137,NA19142,NA19143,NA19145,NA19152,NA19161,NA19172,NA19221,NA19222 essv14800 11 5743360 5798932 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18870 nsv442598 11 5744656 5765715 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv471361 11 5765662 5766622 CNV Deletion Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548071,nssv548072 M 3 "" esv32705 11 5765963 5766765 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99812 S 51 1 0 "" 22086 nsv517591 11 5768542 5778149 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv652452,nssv671741 M 2026 0 2 "" nsv515929 11 5797644 5798432 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv652108,nssv652760,nssv689062 M 2026 0 3 "" nsv8785 11 5799315 5800942 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20647 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA11830 nsv515489 11 5819108 5891679 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv691247,nssv653296,nssv678292,nssv690559,nssv680107 M 2026 5 0 "" dgv345e1 11 5824631 5964189 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1292,essv189,essv4107,essv5678 M 271 0 0 "" NA18529,NA18605,NA18980,NA18994 essv4941 11 5824737 5890620 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18537 nsv8786 11 5827813 5904997 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19845,nssv22848,nssv23329,nssv22332,nssv19700,nssv22081,nssv20069,nssv19975,nssv25056 M 31 3 6 Samples from several populations that are part of the HapMap project. "" NA18502,NA18537,NA18853,NA18860,NA18972,NA18980,NA19173,NA19221,NA19240 dgv130n27 11 5828407 5891679 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv467674,nsv467676,nsv467671,nsv467677,nsv467678,nsv467675,nsv467673 M 1557 7 0 "" HGDP00544,HGDP00753,HGDP00774,HGDP00786,HGDP01102,HGDP01213,HGDP01355 nsv442600 11 5828813 5839893 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv7655 11 5830018 5844580 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv990 S 9 0 1 "" NA19240 nsv433515 11 5832443 5834485 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463396 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA19240 nsv442217 11 5842285 5892086 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv346e1 11 5842287 5890620 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv7509,essv6536 M 271 0 0 "" NA18532,NA18611 dgv39e55 11 5842287 5890620 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv34213,esv34360 M 771 2 0 "" NA18532,NA18611 essv5015 11 5842287 5911385 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18571 dgv40e55 11 5842287 5925761 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv34778,esv34821 M 771 2 0 "" NA18571,NA18994 dgv131n27 11 5856461 5891679 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv467681,nsv467680,nsv467696,nsv467679,nsv467689,nsv467682,nsv467687,nsv467685,nsv467684,nsv467686,nsv467688 M 1557 11 0 "" HGDP00714,HGDP00778,HGDP00945,HGDP00948,HGDP00954,HGDP01099,HGDP01188,HGDP01195,HGDP01198,HGDP01289,HGDP01347 nsv818796 11 5856461 5891679 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417677,nssv1417107,nssv1417133 M 112 3 0 "" NA18529,NA18537,NA18994 dgv132n27 11 5856461 5916333 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv467693,nsv467695,nsv467691,nsv467690,nsv467692 M 1557 5 0 "" HGDP00968,HGDP01097,HGDP01194,HGDP01321,HGDP01322 nsv471362 11 5862099 5863035 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548073 S 3 "" esv33818 11 5877705 5920377 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93357,essv99362 M 51 1 1 "" 22170,22335 nsv518271 11 6007893 6008387 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695703 S 2026 0 1 "" nsv467697 11 6101574 6121276 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542909 S 1557 0 1 "" 1782681080_A nsv522884 11 6101574 6121276 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698540 S 2026 0 1 "" nsv523933 11 6129922 6160892 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699779 S 2026 0 1 "" nsv7656 11 6239680 6284402 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8876 S 9 0 1 "" NA12156 nsv528149 11 6256592 6258189 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704696 S 2026 0 1 "" nsv522558 11 6256592 6263056 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705940 S 2026 0 1 "" nsv519454 11 6292138 6311592 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696862 S 2026 0 1 "" nsv515990 11 6466820 6479380 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv665607,nssv703812,nssv669741 M 2026 0 3 "" nsv7658 11 6638398 6671322 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv991 S 9 1 0 "" NA19240 nsv832060 11 6641224 6831133 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449012,nssv1449011 M 95 2 0 "" nsv467701 11 6735647 6849442 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542910 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00807 nsv832061 11 6825744 7027648 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449013 S 95 0 1 "" nsv525706 11 6943002 6969490 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701867 S 2026 0 1 "" nsv518745 11 6949653 6961470 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696194 S 2026 0 1 "" nsv523646 11 6949653 6961470 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699447 S 2026 1 0 "" nsv520634 11 6957582 6961470 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv685659,nssv673391 M 2026 2 0 "" nsv818797 11 7152914 7154630 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415994 S 112 1 0 "" NA19140 nsv467702 11 7300338 7326451 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542911 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00039 essv1639 11 7376191 7402481 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18961 nsv525638 11 7393055 7394175 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701792 S 2026 1 0 "" dgv57n21 11 7393055 7394187 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv521456,nsv526629,nsv517979 M 2026 0 3 "" nsv7215 11 7414042 9714789 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6444 S 9 0 0 "" NA12156 nsv7659 11 7490279 7534949 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8877 S 9 0 1 "" NA12156 dgv58n21 11 7629964 7666026 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv524361,nsv519594 M 2026 0 2 "" nsv526297 11 7643250 7644291 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702578 S 2026 0 1 "" nsv522192 11 7664344 7664534 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694967 S 2026 0 1 "" dgv19n6 11 7673480 7673807 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv38930,nsv38513 M 24 "" nsv509387 11 7708273 7823869 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623813,nssv619857,nssv621139 M 4 3 0 "" NA10860,NA15510,NA18994 nsv510998 11 7708273 7825487 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618667 S 4 0 0 "" CHM nsv7660 11 7742179 7808602 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv992,nssv5348 M 9 0 2 "" NA19129,NA19240 nsv442601 11 7769616 7798159 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv7661 11 7778616 7797310 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv993,nssv6445,nssv3924,nssv10800 M 9 4 0 "" NA12156,NA12878,NA18956,NA19240 nsv7662 11 7815404 7847606 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv995 S 9 1 0 "" NA19240 nsv818798 11 7867316 7874870 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417910 S 112 1 0 "" NA18852 nsv522758 11 7905926 7907245 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698397 S 2026 0 1 "" nsv527100 11 7905926 7909496 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703480 S 2026 0 1 "" nsv522567 11 8217874 8221101 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705951 S 2026 0 1 "" nsv527329 11 8231703 8233274 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703754 S 2026 0 1 "" nsv7663 11 8236887 8269756 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6446 S 9 1 0 "" NA12156 nsv519655 11 8310511 8312489 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696975 S 2026 0 1 "" esv2751035 11 8388230 8642027 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6989839,essv6983674,essv6983673,essv6983672,essv6989385 M 771 0 1 "" BEC_611 nsv519052 11 8410170 8431460 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696523 S 2026 0 1 "" esv32551 11 8413599 8491218 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100035 S 51 0 1 "" 22086 nsv471747 11 8436666 8436852 CNV Loss Hinds et al 2006 16327809 Oligo_aCGH,PCR Custom Perlegen arrays nssv646028 M 0.021 95 "" nsv7664 11 8728553 8762673 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8878 S 9 1 0 "" NA12156 essv24306 11 8741389 8966149 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA10856 nsv527920 11 8773271 8813398 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704426 S 2026 0 1 "" nsv509388 11 8776926 8799282 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623818 S 4 1 0 "" NA18994 nsv527073 11 8785744 8805039 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703452 S 2026 0 1 "" nsv7665 11 8795671 8801536 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3925 S 9 1 0 "" NA12878 nsv832062 11 8805871 8966048 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449014 S 95 0 1 "" nsv7666 11 8866143 8885523 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8879 S 9 1 0 "" NA12156 nsv8787 11 8911525 8915674 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22141 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19240 nsv520248 11 8920895 8921514 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv662104,nssv677958,nssv690673 M 2026 0 3 "" esv33264 11 8964188 9267707 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99491 S 51 0 1 "" 22335 nsv7667 11 8994250 9028637 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2857 S 9 1 0 "" NA18555 nsv467706 11 9034228 9071575 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542913 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00328 nsv526778 11 9116315 9141653 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703130 S 2026 0 1 "" nsv515891 11 9232474 9291537 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv665166,nssv666294 M 2026 2 0 "" nsv7669 11 9246952 9291604 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8880 S 9 0 1 "" NA12156 esv32901 11 9267707 9285445 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98855,essv93792,essv100907,essv96925,essv97841,essv95287,essv101748,essv95836,essv96124,essv96664,essv97210,essv98544,essv99934,essv95943,essv93487,essv93257,essv92641,essv96430,essv97645,essv100222,essv100473,essv100445,essv99433,essv98492,essv94156 M 51 0 25 "" 21606,21634,21656,21817,21837,21872,21909,21911,22007,22011,22075,22085,22086,22127,22128,22170,22233,22261,22278,22286,22298,22300,22335,22352,22394 nsv508617 11 9270603 9365138 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619018 S 4 0 1 "" NA10860 nsv521969 11 9291537 9335581 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694738 S 2026 0 1 "" nsv442218 11 9391796 9397985 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv7670 11 9457471 9471326 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9941 S 9 0 1 "" NA18507 nsv7671 11 9468143 9499693 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5349 S 9 1 0 "" NA19129 nsv7672 11 9560998 9593944 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3926 S 9 1 0 "" NA12878 nsv7673 11 9603902 9634309 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6447 S 9 1 0 "" NA12156 nsv521528 11 9624493 9628790 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698145 S 2026 1 0 "" nsv526210 11 9625939 9628790 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702474 S 2026 0 1 "" nsv527910 11 9721924 9725639 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704416 S 2026 0 1 "" nsv39331 11 9751163 9751488 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57909 M 24 "" nsv471749 11 9886475 9890828 CNV Loss Hinds et al 2006 16327809 Oligo_aCGH,PCR Custom Perlegen arrays nssv646030 M 0.021 95 "" nsv521169 11 9886810 9887469 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv686483,nssv683800 M 2026 0 2 "" nsv517092 11 9895121 9899008 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv654947,nssv689501,nssv687576,nssv678804,nssv666814,nssv676410,nssv679188,nssv690389,nssv685033,nssv670228,nssv653772,nssv687880,nssv666777 M 2026 0 13 "" nsv519992 11 9895121 9901400 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697166 S 2026 0 1 "" nsv510239 11 9907919 9913919 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622325,nssv618336,nssv624238,nssv621510 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv7674 11 9968935 10007996 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10801,nssv1927 M 9 2 0 "" NA18555,NA18956 nsv520415 11 10115813 10121032 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv690651,nssv671318 M 2026 0 2 "" nsv515552 11 10182844 10185385 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv687357,nssv673664,nssv651842 M 2026 0 3 "" nsv510240 11 10209812 10215812 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624242 S 4 0 1 "" NA18994 nsv8788 11 10215575 10218328 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17951 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA12872 nsv8789 11 10219961 10231605 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17981,nssv19596,nssv23357,nssv17800,nssv19576,nssv19893 M 31 5 1 Samples from several populations that are part of the HapMap project. "" NA07048,NA10863,NA12802,NA12872,NA18552,NA18860 nsv526453 11 10455679 10458998 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702756 S 2026 0 1 "" nsv518705 11 10466848 10474865 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696156 S 2026 0 1 "" nsv519987 11 10466848 10475553 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697164 S 2026 1 0 "" nsv7675 11 10510965 10543599 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10802 S 9 1 0 "" NA18956 nsv832063 11 10575061 10741857 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449015 S 95 0 1 "" nsv7676 11 10645720 10690715 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5350 S 9 0 1 "" NA19129 nsv38696 11 10713657 10719108 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57274 M 24 "" nsv442220 11 10922331 10938872 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv467707 11 11002835 11040577 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542914 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00628 nsv519990 11 11080232 11109004 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697165 S 2026 0 1 "" nsv521616 11 11080232 11123169 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698234 S 2026 0 1 "" nsv832064 11 11106340 11294479 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449016 S 95 1 0 "" esv32920 11 11172451 11337868 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101545,essv97576,essv101211,essv100770,essv100871,essv101079,essv95124,essv94030,essv101382,essv95540,essv95381,essv97409,essv95827,essv94489,essv99136,essv92978,essv93694,essv96220,essv96663,essv98602,essv99869,essv93422,essv96510,essv100540,essv99478,essv96379,essv94151 M 51 24 2 "" 21603,21616,21618,21656,21693,21721,21802,21805,21847,21872,21879,21911,21932,21938,21939,21972,22007,22011,22085,22086,22128,22261,22298,22335,22371,22394 nsv509389 11 11192358 11264360 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623826,nssv619877,nssv621149 M 4 3 0 "" NA10860,NA15510,NA18994 nsv7677 11 11220871 11227546 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2858,nssv5351,nssv10804 M 9 3 0 "" NA18555,NA18956,NA19129 nsv524019 11 11250242 11250829 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699880 S 2026 0 1 "" essv8891 11 11250242 11269413 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19171 nsv832065 11 11257343 11437803 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449018 S 95 1 0 "" nsv442221 11 11258385 11262056 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv519371 11 11258440 11263107 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv655728,nssv676956,nssv687392,nssv681368,nssv659008 M 2026 0 5 "" nsv523052 11 11319881 11320602 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698735 S 2026 0 1 "" nsv518823 11 11339918 11344431 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696275 S 2026 0 1 "" nsv528861 11 11339918 11347161 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705541 S 2026 0 1 "" nsv508618 11 11364625 11528944 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620174 S 4 0 1 "" NA15510 nsv522669 11 11382774 11383616 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv706074 S 2026 0 1 "" nsv7678 11 11486692 11526175 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8881 S 9 0 1 "" NA12156 nsv7680 11 11652609 11673376 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6448 S 9 0 1 "" NA12156 nsv832066 11 11662976 11844027 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449019 S 95 1 0 "" nsv832067 11 11755281 11954897 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449020 S 95 1 0 "" nsv8790 11 11779958 11783292 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19875,nssv18169,nssv18172,nssv20237,nssv22877,nssv17830,nssv20005,nssv19044,nssv19864,nssv19908 M 31 0 10 Samples from several populations that are part of the HapMap project. "" NA10839,NA12802,NA18537,NA18563,NA18564,NA18572,NA18942,NA18972,NA18975,NA18980 nsv8792 11 11831412 11833326 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19626,nssv20648,nssv23415,nssv19730,nssv22063,nssv19905,nssv19556,nssv20379,nssv22171,nssv19606,nssv25081,nssv20677,nssv20878,nssv20035,nssv19923,nssv22604,nssv22906,nssv19074,nssv18011,nssv18962,nssv18245,nssv20129,nssv18199,nssv22735,nssv19894,nssv17860 M 31 25 1 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10847,NA10863,NA11830,NA12155,NA12740,NA12802,NA12872,NA18504,NA18517,NA18537,NA18552,NA18572,NA18853,NA18860,NA18972,NA18975,NA18980,NA19007,NA19132,NA19144,NA19173,NA19221,NA19240 nsv7681 11 11838821 11883690 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8882 S 9 0 1 "" NA12156 nsv524777 11 11861934 11875274 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700768 S 2026 0 1 "" nsv524257 11 11942637 11945018 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700154 S 2026 0 1 "" nsv526144 11 11954471 11955605 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702399 S 2026 0 1 "" nsv515847 11 11970193 11973521 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv668660,nssv662310,nssv686440,nssv670981,nssv665005,nssv679637,nssv699259,nssv654604,nssv658142,nssv693824,nssv654912,nssv690012,nssv663639,nssv665113,nssv687787,nssv669088 M 2026 8 8 "" nsv7682 11 12044949 12080085 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3927 S 9 1 0 "" NA12878 nsv832068 11 12076913 12262203 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449021 S 95 1 0 "" nsv515573 11 12150320 12162369 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv682671,nssv663939,nssv682793 M 2026 0 3 "" nsv467708 11 12184257 12190304 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542915 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00550 nsv522844 11 12277273 12294098 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698497 S 2026 0 1 "" nsv527449 11 12277273 12294098 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703890 S 2026 1 0 "" nsv524625 11 12409320 12409617 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700587 S 2026 0 1 "" nsv519326 11 12496335 12499458 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696793 S 2026 0 1 "" nsv510241 11 12523098 12529098 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624250,nssv618337,nssv621514,nssv622328 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv520324 11 12552583 12562684 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv690094,nssv662922 M 2026 0 2 "" nsv510242 11 12588329 12594329 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624253 S 4 0 1 "" NA18994 nsv7683 11 12591132 12625561 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3928 S 9 1 0 "" NA12878 nsv519735 11 12796085 12822017 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694344 S 2026 0 1 "" nsv38509 11 12900319 12900595 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57087 M 24 "" nsv521519 11 12949725 12950688 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698136 S 2026 0 1 "" nsv523078 11 13153614 13165951 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698768 S 2026 1 0 "" nsv7684 11 13539835 13584509 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8883 S 9 0 1 "" NA12156 nsv507582 11 13574907 13580907 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619283 S 4 1 0 "" NA10860 nsv519811 11 13584883 13585594 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv662188,nssv663696,nssv678062,nssv690386,nssv690252,nssv658869,nssv662461 M 2026 0 7 "" nsv832069 11 13722997 13898818 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449022 S 95 1 0 "" nsv526762 11 13882655 13891504 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703113 S 2026 0 1 "" nsv39354 11 13899466 13899515 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57932 M 24 "" nsv38548 11 14304887 14305202 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57126 M 24 "" esv32960 11 14431664 14468738 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98839,essv99856 M 51 0 2 "" 21606,22086 nsv7685 11 14509455 14541862 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6449 S 9 1 0 "" NA12156 nsv518508 11 14590066 14601002 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695949 S 2026 0 1 "" nsv517985 11 14598458 14646768 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694188 S 2026 0 1 "" nsv832071 11 14832998 15005746 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449023 S 95 0 1 "" nsv7686 11 15013785 15048468 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2859 S 9 1 0 "" NA18555 nsv507583 11 15027718 15033718 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623318 S 4 1 0 "" NA18994 nsv516403 11 15182763 15184630 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv688651,nssv702965,nssv668096,nssv673302,nssv654987 M 2026 0 5 "" nsv832072 11 15183419 15348766 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449024 S 95 1 0 "" nsv469886 11 15572079 15742519 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649907 M 265 0 0 Samples from several populations that are part of the HapMap project. "" nsv510243 11 15603894 15609894 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624257 S 4 0 1 "" NA18994 nsv518531 11 15645967 15732850 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695974 S 2026 1 0 "" nsv832073 11 15778985 15940654 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449025 S 95 1 0 "" nsv832074 11 15883681 16057348 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449026 S 95 0 1 "" nsv818799 11 15887048 15903379 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417665 S 112 0 1 "" NA18994 nsv522229 11 15897675 15903379 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694146 S 2026 0 1 "" nsv467710 11 16175917 16223316 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542916 S 1557 0 1 "" 1780862001_A nsv510244 11 16278236 16284236 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622331,nssv624258,nssv618338,nssv621518 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv832075 11 16348276 16447510 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449027 S 95 1 0 "" dgv20n6 11 16543739 16543875 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv39792,nsv39678 M 24 "" dgv21n6 11 16554140 16554477 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv38701,nsv39144 M 24 "" nsv832076 11 16607449 16648384 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449038,nssv1449036,nssv1449037,nssv1449035,nssv1449034,nssv1449033,nssv1449029,nssv1449032,nssv1449031,nssv1449030 M 95 0 10 "" nsv7687 11 16677382 16710613 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3929 S 9 1 0 "" NA12878 nsv832077 11 16791121 17015752 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449040 S 95 0 1 "" nsv7688 11 16869335 16896380 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10805 S 9 0 1 "" NA18956 essv3438 11 16871867 16890706 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18956 nsv7689 11 16902529 16947428 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8884 S 9 0 1 "" NA12156 nsv467711 11 16984131 17277373 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542917 S 1557 1 0 "" NINDS_241 nsv7691 11 17108169 17153470 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8885 S 9 0 1 "" NA12156 nsv469762 11 17127266 17277267 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649783 M 265 0 0 Samples from several populations that are part of the HapMap project. "" nsv7692 11 17244181 17277944 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8886 S 9 1 0 "" NA12156 nsv524611 11 17257420 17272605 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700572 S 2026 0 1 "" nsv469895 11 17324846 17540796 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649916 M 265 0 25 Samples from several populations that are part of the HapMap project. "" nsv467712 11 17350220 17375053 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542918 S 1557 0 1 "" NINDS_66 dgv59n21 11 17357710 17391790 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv528959,nsv517772 M 2026 0 22 "" nsv482158 11 17363374 17366782 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558519 S 1 1 0 "" KB1 nsv467713 11 17364601 17397049 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542919 S 1557 0 1 "" NINDS_49 nsv467714 11 17469723 17478401 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542920 S 1557 0 1 "" NINDS_258 esv33415 11 17489172 17506012 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101348,essv92533,essv100270 M 51 0 3 "" 21805,22233,22286 nsv7693 11 17513364 17558347 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8887 S 9 0 1 "" NA12156 nsv7694 11 17521008 17543080 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3930 S 9 1 0 "" NA12878 nsv467715 11 17572231 17612724 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542921 S 1557 0 1 "" NINDS_172 nsv520453 11 17581854 17612724 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv671583,nssv702588,nssv687020 M 2026 0 3 "" nsv39699 11 17689383 17689454 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv58277 M 24 "" nsv509390 11 17704316 17833419 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623850 S 4 1 0 "" NA18994 nsv521511 11 17705604 17728063 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698129 S 2026 0 1 "" nsv516767 11 17715163 17766300 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv682282,nssv670708,nssv687100,nssv660208 M 2026 0 4 "" nsv832078 11 17737079 17910097 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449041 S 95 0 1 "" nsv515890 11 17772988 17777758 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv665165,nssv669740 M 2026 0 2 "" nsv526501 11 17772988 17780948 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702810 S 2026 0 1 "" nsv832079 11 17884543 18004319 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449042 S 95 0 1 "" nsv518373 11 18121263 18151924 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695801 S 2026 0 1 "" nsv39555 11 18121775 18121861 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv58133 M 24 "" nsv521662 11 18182318 18183727 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698279 S 2026 0 1 "" nsv519650 11 18213097 18213593 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694074 S 2026 0 1 "" nsv7695 11 18328802 18362407 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3931 S 9 1 0 "" NA12878 nsv509392 11 18338229 18435321 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623857 S 4 1 0 "" NA18994 nsv510999 11 18338229 18435321 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618611 S 4 0 0 "" CHM nsv523373 11 18339487 18358107 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699122 S 2026 0 1 "" nsv520101 11 18358107 18362086 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv688063,nssv660773 M 2026 0 2 "" nsv39368 11 18382274 18382930 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57946 M 24 "" nsv467719 11 18404187 18498803 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542923 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00423 nsv516413 11 18584994 18600334 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv663411,nssv693714,nssv668198 M 2026 0 3 "" nsv7696 11 18649492 18681485 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv996 S 9 1 0 "" NA19240 nsv525192 11 18679367 18749936 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701271 S 2026 0 1 "" nsv525452 11 18692523 18759079 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701580 S 2026 1 0 "" dgv347e1 11 18775305 19038644 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv837,essv10402,essv16869,essv10801,essv18632,essv24767,essv3037,essv10645,essv15680,essv17909,essv16016 M 271 0 0 "" NA10860,NA12003,NA12234,NA18501,NA18523,NA18855,NA18912,NA18973,NA18981,NA19205,NA19222 nsv832080 11 18838624 18932090 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449048,nssv1449049,nssv1449043,nssv1449044,nssv1449047,nssv1449045,nssv1449046 M 95 7 0 "" esv2750987 11 18844035 18931798 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6985196,essv6988903 M 771 1 0 "" SPC_124 nsv832082 11 18846555 19004570 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449051 S 95 1 0 "" esv2750988 11 18860180 18918255 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6983854,essv6983855 M 771 0 1 "" BEC_635 dgv41e55 11 18869797 18939210 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv2750989,esv2750991 M 771 2 0 "" BEC_543,BEC_576 esv2750990 11 18882200 18918300 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6985700,essv6985699,essv6988932 M 771 1 0 "" SPC_34 nsv509393 11 18882924 18882924 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619897 S 4 1 0 "" NA10860 nsv7697 11 18884357 18938466 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10806 S 9 0 1 "" NA18956 dgv348e1 11 18886391 18939210 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv17386,essv21954 M 271 0 0 "" NA07000,NA18855 nsv8793 11 18888753 18890379 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25106 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19221 esv33835 11 18889253 18944273 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101565,essv101258,essv93952,essv96860,essv94759,essv93987,essv93176,essv95250,essv97373,essv99012,essv92796,essv96146,essv96629,essv98593,essv96069,essv93193,essv92648,essv100598,essv99456,essv96294,essv94253 M 51 0 21 "" 21603,21618,21634,21659,21791,21802,21863,21872,21879,21938,21944,22007,22011,22085,22127,22170,22233,22298,22335,22371,22394 nsv8794 11 18890379 18906533 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17890,nssv22123 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA12802,NA18504 dgv42e55 11 18894043 18918300 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv2750995,esv2750992,esv34565,esv2750993,esv2750994 M 771 5 0 "" BEC_617,BEC_645,BEC_717,BEC_732,NA18505 nsv526229 11 18896242 18931436 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702495 S 2026 1 0 "" dgv349e1 11 18896898 18939210 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv8533,essv2559,essv5766,essv7964,essv18818,essv6864,essv20707,essv1645,essv15964,essv23757,essv14819,essv3336,essv18559 M 271 0 0 "" NA10851,NA11994,NA12248,NA12802,NA18523,NA18540,NA18558,NA18870,NA18948,NA18961,NA18974,NA19142,NA19203 dgv43e55 11 18896898 18940971 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv2750998,esv2750996,esv2750997,esv2750999,esv2751020 M 771 5 0 "" BEC_11,BEC_299,BEC_389,BEC_402,BEC_726 nsv518570 11 18897686 18906668 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696013 S 2026 1 0 "" nsv8795 11 18897800 18928886 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19636,nssv19935,nssv22794,nssv20707,nssv22935,nssv23443,nssv20908,nssv20267,nssv20159,nssv22201,nssv20678,nssv25131,nssv22153,nssv18992,nssv19938,nssv17920,nssv18041,nssv20065,nssv18229,nssv18275,nssv19953,nssv19586,nssv19924,nssv18202,nssv20439,nssv19134,nssv22362,nssv22634,nssv19790,nssv19656 M 31 30 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10847,NA10863,NA11830,NA12155,NA12740,NA12802,NA12872,NA18502,NA18504,NA18517,NA18537,NA18552,NA18563,NA18564,NA18572,NA18853,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19144,NA19173,NA19221,NA19240 nsv7698 11 18899443 18911757 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10888,nssv10807 M 9 2 0 "" NA15510,NA18956 nsv66 11 18903769 18911757 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv66 S 1 1 0 "" NA15510 nsv509394 11 18904807 19000506 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618085,nssv623860,nssv621165 M 4 3 0 "" CHM,NA15510,NA18994 nsv442602 11 18905648 18918564 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv350e1 11 18905796 18915387 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv19856,essv1323,essv6076,essv7485,essv19117,essv21350,essv8003,essv16614,essv22244,essv22017,essv21923,essv976 M 271 0 0 "" NA10860,NA11992,NA12044,NA12057,NA12234,NA12815,NA18561,NA18621,NA18964,NA18973,NA19208,NA19221 dgv44e55 11 18905796 18918255 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv34811,esv2751004,esv2751002,esv2751005,esv2751006,esv2751001 M 771 0 6 "" BEC_427,BEC_512,NA11994,NA12057,SPC_167,SPC_29 dgv45e55 11 18905796 18918300 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv34962,esv2751008,esv34418,esv34726,esv35169,esv2751000,esv2751003,esv2751007 M 771 8 0 "" BEC_22,BEC_397,BEC_462,BEC_604,BEC_725,NA18855,NA19203,NA19222 dgv351e1 11 18905796 18932028 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv18039,essv7669,essv20872,essv15918,essv14020,essv19724,essv8592,essv5079,essv953,essv6100,essv4348,essv19059,essv12889,essv6447,essv19799,essv19033,essv24016,essv12050,essv13245,essv24190,essv22708,essv923,essv5958,essv3851,essv15166 M 271 0 0 "" NA06993,NA07034,NA07056,NA11830,NA12004,NA12145,NA12236,NA12864,NA12873,NA18522,NA18570,NA18573,NA18577,NA18592,NA18622,NA18632,NA18949,NA18953,NA18981,NA19130,NA19131,NA19205,NA19210,NA19222,NA19238 dgv46e55 11 18905796 18934700 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv2751014,esv34291,esv2751013,esv2751009,esv2751010,esv34359,esv34575,esv34664,esv34767,esv2751011,esv2751012,esv2751015,esv2751016,esv2751017,esv2751018,esv2751019 M 771 16 0 "" BEC_182,BEC_191,BEC_335,BEC_361,BEC_428,BEC_446,BEC_606,BEC_688,NA10860,NA12234,NA18523,NA18964,NA19205,SPC_141,SPC_66,SPC_71 nsv67 11 18916368 18929772 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv67 S 1 1 0 "" NA15510 nsv7699 11 18916368 18929772 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10808,nssv10889 M 9 2 0 "" NA15510,NA18956 nsv526034 11 19006054 19032203 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702265 S 2026 0 1 "" essv13326 11 19439936 19450983 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18500 nsv524289 11 19449210 19450983 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700189 S 2026 0 1 "" nsv523404 11 19711264 19721589 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699155 S 2026 0 1 "" nsv526704 11 19727374 19727630 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703043 S 2026 0 1 "" nsv524136 11 19827888 19830065 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700014 S 2026 0 1 "" nsv519433 11 19850853 19855450 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696851 S 2026 0 1 "" nsv7700 11 19868547 19902141 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv997 S 9 1 0 "" NA19240 nsv528404 11 19944988 19946802 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704996 S 2026 0 1 "" nsv518583 11 19949373 19975334 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696028 S 2026 0 1 "" nsv524632 11 19976233 19976673 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700596 S 2026 0 1 "" nsv522845 11 19976434 19980715 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698498 S 2026 1 0 "" nsv818801 11 19976434 19980715 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417718 S 112 1 0 "" NA18999 nsv516382 11 20025540 20035072 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv668503,nssv667933 M 2026 2 0 "" nsv524463 11 20063755 20075949 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700397 S 2026 0 1 "" nsv467720 11 20075874 20696697 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542924 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00715 nsv471750 11 20152256 20152488 CNV Loss Hinds et al 2006 16327809 Oligo_aCGH,PCR Custom Perlegen arrays nssv646031 M 0.484 95 "" nsv467721 11 20193028 20232522 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542925 S 1557 0 1 "" 1780862575_A nsv523776 11 20248669 20255374 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699599 S 2026 0 1 "" nsv832083 11 20297075 20468273 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449052 S 95 1 0 "" nsv7702 11 20324779 20360007 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3932 S 9 1 0 "" NA12878 nsv524455 11 20510265 20522952 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700388 S 2026 0 1 "" nsv509395 11 20557326 20645061 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623864 S 4 1 0 "" NA18994 nsv523326 11 20596440 20601336 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699070 S 2026 1 0 "" nsv7703 11 20610903 20658213 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1928,nssv8888 M 9 0 2 "" NA12156,NA18555 nsv39323 11 20623815 20630083 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57901 M 24 "" nsv519547 11 20646062 20658610 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv656821,nssv681402,nssv697904 M 2026 0 3 "" nsv467722 11 20646593 20716570 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542926 S 1557 0 1 "" 1782681313_A nsv517915 11 20911760 20920147 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695327 S 2026 1 0 "" nsv832084 11 20956176 21148694 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449054,nssv1449053 M 95 2 0 "" nsv7704 11 20995557 21040521 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8889 S 9 0 1 "" NA12156 dgv352e1 11 21112669 21174258 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv8272,essv11615,essv10602 M 271 0 0 "" NA19153,NA19207,NA19211 essv16605 11 21112669 21187246 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19208 nsv832085 11 21115236 21289022 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449055 S 95 0 1 "" dgv31n17 11 21140569 21177707 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437703,nsv437700 M 60 0 2 "" NA19208,NA19211 nsv8796 11 21143340 21172920 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20938 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19144 dgv133n27 11 21145601 21173428 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv467726,nsv467723,nsv467724,nsv467725 M 1557 0 4 "" HGDP00915,HGDP01274,HGDP01408,HGDP01411 nsv515818 11 21145601 21173428 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv661633,nssv686941,nssv651997,nssv685452,nssv658490,nssv691867,nssv685707,nssv664754,nssv673274,nssv685723,nssv663880,nssv671389,nssv693929,nssv684984,nssv686216,nssv670159,nssv658121,nssv674298,nssv665966,nssv664248,nssv661195,nssv683612,nssv688147,nssv682533,nssv674826,nssv660823,nssv681075,nssv653091,nssv684749,nssv685194,nssv688042 M 2026 0 31 "" nsv818802 11 21145601 21173428 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416860,nssv1418182,nssv1418183 M 112 0 3 "" NA19144,NA19145,NA19239 essv14684 11 21148024 21174258 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19145 essv9839 11 21148024 21194273 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19144 nsv442603 11 21149965 21166513 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv437704 11 21150466 21173428 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467585 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19145 nsv507584 11 21280456 21286456 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617810 S 4 1 0 "" CHM nsv522335 11 21356692 21386464 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695115 S 2026 0 1 "" nsv521699 11 21399638 21403906 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698321 S 2026 0 1 "" nsv516969 11 21403384 21403906 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv653532,nssv668044,nssv659768,nssv679464,nssv687286,nssv681297,nssv664973 M 2026 0 7 "" nsv832086 11 21438545 21568649 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449056 S 95 1 0 "" nsv469712 11 21513423 21681734 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649733 M 265 0 3 Samples from several populations that are part of the HapMap project. "" nsv442604 11 21671128 21679716 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv7705 11 21676807 21707314 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3934 S 9 1 0 "" NA12878 nsv519043 11 21680047 21681310 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696513 S 2026 0 1 "" dgv353e1 11 21740206 21805311 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv16593,essv13119 M 271 0 0 "" NA18859,NA18860 nsv8797 11 21762262 21802697 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23471 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18860 nsv526951 11 21786940 21796469 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703323 S 2026 0 1 "" nsv526961 11 21787842 21793805 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703333 S 2026 0 1 "" nsv522575 11 21793805 21804954 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705959 S 2026 0 1 "" nsv8798 11 21803616 21805985 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20189,nssv22664 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18517,NA19173 nsv467729 11 21851390 21969179 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542933 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00716 nsv510245 11 21900186 21906186 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624270 S 4 0 1 "" NA18994 nsv517965 11 21904976 21908864 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695377 S 2026 0 1 "" nsv528022 11 21947563 22049409 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704551 S 2026 0 1 "" nsv39275 11 21967098 21967166 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57853 M 24 "" nsv7706 11 22144983 22179538 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv998 S 9 1 0 "" NA19240 nsv38773 11 22317186 22317239 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57351 M 24 "" dgv32n17 11 22396289 22403439 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437706,nsv437705 M 60 0 2 "" NA19103,NA19194 nsv7707 11 22418034 22461828 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3935 S 9 0 1 "" NA12878 nsv510246 11 22736245 22742245 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621523,nssv624274,nssv618339,nssv622336 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv523451 11 22785182 22825513 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699208 S 2026 0 1 "" nsv524283 11 22799796 22837578 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700182 S 2026 0 1 "" nsv522782 11 22825513 22847679 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698425 S 2026 0 1 "" nsv39771 11 22964504 22964615 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv58349 M 24 "" nsv467732 11 22970007 23000729 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542934 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00723 nsv7708 11 22990008 23003545 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9817 S 9 1 0 "" NA18507 nsv510247 11 23043203 23049203 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624276 S 4 0 1 "" NA18994 esv33236 11 23051127 23051442 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98887 S 51 1 0 "" 21606 nsv7709 11 23135989 23178287 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6450 S 9 0 1 "" NA12156 nsv467733 11 23156896 23171456 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542935 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00454 nsv523541 11 23235428 23240603 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699318 S 2026 0 1 "" nsv467735 11 23260209 23363081 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542936 S 1557 0 1 "" NINDS_103 nsv7710 11 23316646 23342040 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3936 S 9 1 0 "" NA12878 nsv832087 11 23361050 23525759 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449057 S 95 1 0 "" nsv525662 11 23390247 23405110 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701818 S 2026 1 0 "" dgv134n27 11 23521419 23542452 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv467737,nsv467738 M 1557 2 0 "" HGDP00904,HGDP00910 nsv818803 11 23534018 23538973 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417151 S 112 0 1 "" NA18542 dgv135n27 11 23739914 23797751 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv467742,nsv467743 M 1557 0 2 "" 1780854341_A,1780862310_A nsv527858 11 23753287 23816567 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704356 S 2026 1 0 "" nsv832088 11 23768167 23902325 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449058 S 95 0 1 "" nsv467744 11 23958551 24017661 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542942 S 1557 0 1 "" 1780854481_A nsv467747 11 23967106 24042316 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542943 S 1557 0 1 "" 1780862432_A nsv526281 11 24017661 24048258 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702560 S 2026 0 1 "" nsv517506 11 24044290 24044377 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv652213,nssv672788 M 2026 0 2 "" nsv467748 11 24066492 24122808 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542944 S 1557 0 1 "" 1780862176_A nsv467754 11 24203480 24247394 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542946 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00781 nsv7711 11 24289025 24315509 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1929 S 9 0 1 "" NA18555 nsv511000 11 24300719 24369737 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621662 S 4 0 0 "" NA15510 nsv39424 11 24304385 24304476 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv58002 M 24 "" nsv509396 11 24325849 24369737 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618086 S 4 1 0 "" CHM nsv7713 11 24332671 24358571 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv999,nssv3937 M 9 2 0 "" NA12878,NA19240 nsv467755 11 24363957 24484534 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542947 S 1557 0 1 "" NINDS_94 nsv442605 11 24400825 24406833 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv60n21 11 24574871 24578725 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv520119,nsv527950 M 2026 0 2 "" nsv522581 11 24594446 24613914 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705968 S 2026 0 1 "" nsv7714 11 24672045 24701679 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6451 S 9 1 0 "" NA12156 nsv523280 11 24735035 24743229 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699015 S 2026 1 0 "" nsv467756 11 24735537 24749736 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542948 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00946 nsv467757 11 24735537 24759637 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542949 S 1557 0 1 "" 1780862459_A nsv515848 11 24739759 24750291 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv672585,nssv669547,nssv665006,nssv693825,nssv667374,nssv683724,nssv705342 M 2026 7 0 "" nsv818804 11 24741498 24743229 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418490 S 112 0 1 "" NA19193 nsv818805 11 24741498 24749736 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417911 S 112 1 0 "" NA18852 nsv507585 11 24821567 24827567 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619284 S 4 1 0 "" NA10860 nsv467758 11 24925804 25017923 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542950 S 1557 0 1 "" 1780854464_A esv2422339 11 24961193 25503241 CNV Deletion Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161327 S 181 0 1 "" ND05155 nsv832089 11 24974647 25157208 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449059 S 95 1 0 "" nsv520070 11 25033840 25035470 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv680185,nssv662708,nssv660484 M 2026 0 3 "" nsv518374 11 25033840 25041872 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695802 S 2026 0 1 "" nsv442222 11 25040789 25042313 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv354e1 11 25045288 25279174 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv12085,essv14238,essv13974 M 271 0 0 "" NA19098,NA19099,NA19100 nsv467760 11 25071881 25097358 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542951 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01416 nsv467762 11 25074327 25131774 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542953 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00941 nsv516879 11 25078934 25249759 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv661939,nssv660706,nssv662809,nssv658870,nssv654638,nssv675720,nssv675330,nssv656563 M 2026 2 6 "" nsv437707 11 25078934 25265915 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467588 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19100 nsv442223 11 25090419 25250126 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv47e55 11 25093100 25250127 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv34421,esv34724 M 771 0 2 "" NA19098,NA19099 nsv467763 11 25128661 25557318 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542954 S 1557 0 1 "" NINDS_214 dgv355e1 11 25148529 25322096 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv10007,essv16165,essv12606 M 271 0 0 "" NA19098,NA19099,NA19100 nsv7715 11 25184498 25221798 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10809,nssv1000,nssv6453,nssv3938,nssv5352,nssv1930 M 9 6 0 "" NA12156,NA12878,NA18555,NA18956,NA19129,NA19240 nsv509397 11 25201043 25201043 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619904 S 4 1 0 "" NA10860 essv12946 11 25204553 25229775 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19102 nsv438183 11 25248415 25250805 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470326,nssv470327 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA19099,NA19100 nsv38875 11 25333781 25334449 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57453 M 24 "" nsv832090 11 25339414 25497574 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449060 S 95 0 1 "" nsv521288 11 25367792 25372432 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697892 S 2026 0 1 "" nsv523452 11 25367792 25387893 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699209 S 2026 0 1 "" nsv442224 11 25384338 25390482 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv521676 11 25387893 25390042 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698295 S 2026 0 1 "" nsv38658 11 25389080 25389300 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57236 M 24 "" esv2751021 11 25418387 25543232 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6983231,essv6983232,essv6989760 M 771 0 1 "" BEC_558 nsv467764 11 25506906 25540348 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542955 S 1557 0 1 "" NINDS_125 dgv356e1 11 25520766 25595288 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv9285,essv8963,essv13282,essv13343,essv9570,essv12882 M 271 0 0 "" NA18500,NA18501,NA18502,NA19137,NA19139,NA19201 nsv437708 11 25526424 25587434 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467589 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19139 nsv467765 11 25537913 25549511 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542956 S 1557 0 1 "" 1798860114_A nsv437709 11 25562420 25587434 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467590 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18854 nsv8799 11 25562874 25582642 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22392 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18502 nsv442606 11 25565122 25584722 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv517418 11 25573116 25582465 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv689912,nssv671115,nssv689016,nssv681419,nssv660581,nssv669186,nssv680420,nssv675252,nssv679578,nssv664060,nssv666026,nssv671696,nssv654605,nssv681115,nssv669654,nssv671220,nssv692078,nssv690031,nssv678043,nssv654280,nssv653768,nssv660618,nssv687255,nssv685086,nssv684637,nssv671960,nssv653930,nssv677569,nssv653326,nssv686999,nssv688064,nssv668004,nssv689500,nssv681733,nssv676729,nssv679071,nssv669296,nssv702322,nssv678234,nssv689232,nssv678314,nssv652573,nssv677937,nssv674895,nssv685195,nssv684205,nssv688137,nssv680032,nssv686758,nssv682341 M 2026 0 50 "" nsv818806 11 25573116 25582465 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416958,nssv1416959,nssv1417912,nssv1417913 M 112 0 4 "" NA18852,NA18854,NA19137,NA19139 dgv357e1 11 25590379 25799242 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv12487,essv14719,essv11214,essv16207,essv13864 M 271 0 0 "" NA18854,NA19159,NA19161,NA19204,NA19207 nsv520281 11 25602443 25607802 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv662353,nssv674553 M 2026 0 2 "" nsv526726 11 25602443 25630609 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703066 S 2026 0 1 "" nsv8800 11 25612852 25628066 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18131 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA12872 nsv526614 11 25630609 25686584 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702934 S 2026 1 0 "" nsv38780 11 25636603 25636656 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57358 M 24 "" nsv38539 11 25636659 25636712 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57117 M 24 "" dgv358e1 11 25651185 25673125 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv9955,essv16619,essv8066 M 271 0 0 "" NA19161,NA19204,NA19208 nsv7716 11 25651712 25682778 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9818 S 9 0 1 "" NA18507 dgv359e1 11 25657046 25684737 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv7949,essv11071,essv13104,essv13361 M 271 0 0 "" NA18859,NA19138,NA19159,NA19203 dgv136n27 11 25657565 25677282 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv467770,nsv467769,nsv467767,nsv467768,nsv467766,nsv467771,nsv467773 M 1557 0 7 "" HGDP00458,HGDP00460,HGDP00474,HGDP00910,HGDP00929,HGDP00984,HGDP01286 dgv33n17 11 25657565 25686846 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437711,nsv437710 M 60 0 2 "" NA19132,NA19208 nsv517141 11 25658239 25677282 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv680421,nssv657269,nssv671085,nssv681621,nssv662525,nssv683070,nssv664705,nssv655581,nssv663233,nssv670465,nssv687440,nssv693895,nssv681605,nssv674896,nssv665967,nssv662463,nssv664330,nssv684220,nssv693277,nssv661063,nssv666776,nssv670226,nssv684296,nssv652888,nssv664078,nssv691868,nssv685286,nssv659959,nssv667138,nssv652594,nssv653517,nssv686635,nssv680391,nssv684901,nssv672855,nssv680259,nssv656182,nssv656964,nssv658709,nssv685708,nssv665429,nssv665201,nssv674158,nssv678802,nssv669235,nssv666068,nssv657153,nssv667742,nssv667358,nssv665795,nssv667463,nssv673776,nssv678137,nssv689391,nssv665819,nssv693160,nssv681523,nssv667263,nssv689660,nssv663881,nssv658205,nssv667392,nssv679040,nssv666849,nssv678643,nssv653642,nssv652617,nssv683042,nssv679867,nssv657983,nssv659628,nssv653533,nssv676730,nssv658669,nssv680906,nssv677122,nssv664136,nssv678268,nssv688148,nssv683941,nssv680033,nssv682534,nssv668533,nssv659263,nssv653942,nssv678063,nssv671463,nssv660707,nssv661739,nssv654913,nssv662586,nssv676979,nssv693055,nssv660730,nssv684160,nssv655398,nssv678784,nssv668805,nssv681076,nssv679793,nssv691510,nssv666335,nssv670506 M 2026 0 103 "" nsv8801 11 25658601 25673179 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23499,nssv22823 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18860,NA19132 nsv433263 11 25660411 25677282 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463144 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA18507 nsv818807 11 25660411 25677282 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416960,nssv1417916,nssv1416778,nssv1417914,nssv1418307,nssv1416777 M 112 0 6 "" NA18852,NA18854,NA19093,NA19138,NA19159,NA19161 nsv442607 11 25663542 25675557 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv360e1 11 25663566 25673125 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv14940,essv16601,essv13241 M 271 0 0 "" NA18860,NA19131,NA19132 esv33637 11 25719823 25720495 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98806 S 51 1 0 "" 21606 esv33072 11 25722561 25725149 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98882,essv100042 M 51 0 2 "" 21606,22086 nsv8803 11 25722991 25729549 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20219 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19173 nsv467774 11 25729898 25881385 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542965 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00869 nsv7717 11 25780402 25820084 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8890 S 9 0 1 "" NA12156 nsv832091 11 25780402 25966463 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449062 S 95 1 0 "" nsv467775 11 25872801 25914120 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542966 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01237 dgv137n27 11 25907895 25942083 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv467776,nsv467777 M 1557 0 2 "" HGDP00099,HGDP01271 nsv525249 11 25998282 25999025 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701343 S 2026 0 1 "" nsv521540 11 26048546 26051933 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698156 S 2026 0 1 "" nsv832094 11 26087309 26249358 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449063 S 95 1 0 "" nsv7718 11 26088227 26117034 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10810 S 9 1 0 "" NA18956 nsv7719 11 26124637 26178153 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2860,nssv10811 M 9 2 0 "" NA18555,NA18956 esv2422406 11 26286446 26430217 CNV Deletion Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161308 S 181 0 1 "" ND04178 nsv38806 11 26385201 26390918 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57384 M 24 "" nsv467778 11 26442096 26560502 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542969 S 1557 0 1 "" NINDS_156 nsv521916 11 26442096 26561907 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694687 S 2026 0 1 "" nsv522526 11 26565073 26567094 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705898 S 2026 1 0 "" nsv467779 11 26618266 26630609 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542970 S 1557 0 1 "" 1780854538_A nsv39059 11 26658462 26658525 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57637 M 24 "" nsv508619 11 26985070 27067310 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619033 S 4 0 1 "" NA10860 nsv7720 11 27028575 27037273 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8891 S 9 0 1 "" NA12156 nsv467782 11 27149291 27452737 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542971 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00068 nsv832095 11 27495202 27672315 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449065,nssv1449064 M 95 2 0 "" nsv832096 11 27977011 28112162 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449066 S 95 0 1 "" nsv38603 11 28095384 28100481 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57181 M 24 "" nsv521677 11 28414313 28425901 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698296 S 2026 0 1 "" nsv832097 11 28573327 28607450 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449067,nssv1449068 M 95 0 2 "" nsv832098 11 28580520 28741706 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449069 S 95 1 0 "" nsv525900 11 28659781 28670715 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702104 S 2026 0 1 "" nsv469516 11 28678018 28827478 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649692 M 265 0 0 Samples from several populations that are part of the HapMap project. "" nsv507586 11 28679044 28685044 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623346,nssv617811,nssv620723 M 4 3 0 "" CHM,NA15510,NA18994 nsv516406 11 28683140 28739760 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv674583,nssv668124 M 2026 0 2 "" nsv7721 11 28738314 28782974 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8892 S 9 0 1 "" NA12156 nsv39366 11 28773250 28773250 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57944 M 24 "" nsv818808 11 28773852 28815354 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416779 S 112 0 1 "" NA19159 nsv507587 11 28842562 28848562 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619285,nssv620727,nssv623349 M 4 3 0 "" NA10860,NA15510,NA18994 essv15316 11 28881069 29029074 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18862 nsv832099 11 28904325 29082099 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449070 S 95 1 0 "" nsv7722 11 28943901 29004217 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8894,nssv1931,nssv9942,nssv3939 M 9 0 4 "" NA12156,NA12878,NA18507,NA18555 nsv508620 11 28960325 28965709 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622818 S 4 0 1 "" NA18994 nsv8804 11 28965284 28969670 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19820,nssv25156,nssv20469,nssv19666,nssv18305,nssv18161,nssv22183,nssv22231,nssv17950,nssv20297,nssv20125,nssv18232,nssv20968,nssv22693,nssv19164,nssv22852,nssv19954,nssv19965,nssv19616,nssv18259,nssv22964,nssv23527 M 31 22 0 Samples from several populations that are part of the HapMap project. "" NA10839,NA10847,NA12740,NA12802,NA12872,NA18504,NA18517,NA18537,NA18552,NA18563,NA18572,NA18853,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19144,NA19221,NA19240 nsv517327 11 29138619 29173959 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv655624,nssv666147,nssv656027,nssv651727,nssv677051,nssv682015,nssv677832,nssv687240,nssv663145 M 2026 0 9 "" nsv7724 11 29306386 29338251 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10812 S 9 1 0 "" NA18956 nsv832100 11 29535135 29718931 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449074,nssv1449071 M 95 2 0 "" nsv832101 11 29615686 29775173 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449075 S 95 1 0 "" nsv832102 11 29661002 29811727 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449076 S 95 0 1 "" essv13342 11 30121848 30136966 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18500 nsv437712 11 30121848 30310301 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467593 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18500 nsv437714 11 30126432 30147389 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467595 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19145 nsv8805 11 30127846 30134156 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20998,nssv22452,nssv22261 M 31 0 3 Samples from several populations that are part of the HapMap project. "" NA18502,NA19144,NA19240 essv12876 11 30128415 30136966 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18502 nsv442608 11 30129311 30137019 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv832103 11 30398251 30563188 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449077 S 95 0 1 "" nsv832105 11 30640502 30831706 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449078 S 95 0 1 "" nsv507588 11 30905171 30911171 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619286,nssv622825,nssv617812,nssv620731 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 essv17950 11 30936338 31020588 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12003 nsv516888 11 30956400 30965664 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv661196,nssv654720,nssv683613 M 2026 0 3 "" nsv529004 11 30970320 31679060 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705711 S 2026 0 1 "" dgv61n21 11 30983795 31081599 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv528490,nsv527534 M 2026 0 2 "" esv2751022 11 31019531 31504508 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6990166,essv6985901,essv6985902 M 771 0 1 "" SPC_83 nsv832106 11 31195989 31386312 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449086,nssv1449085,nssv1449082,nssv1449090,nssv1449093,nssv1449089,nssv1449092,nssv1449091,nssv1449083,nssv1449081,nssv1449088,nssv1449080,nssv1449087,nssv1449079 M 95 14 0 "" nsv7725 11 31337783 31359097 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6454 S 9 0 1 "" NA12156 nsv508621 11 31340300 31373713 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620196 S 4 0 1 "" NA15510 nsv467784 11 31342395 31384778 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542973 S 1557 0 1 "" 1780862202_A nsv467785 11 31445466 31652912 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542974 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00106 dgv62n21 11 31579110 31659092 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv528204,nsv520360 M 2026 0 5 "" nsv7726 11 31635703 31681307 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6455 S 9 0 1 "" NA12156 nsv7727 11 31704913 31749876 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8895 S 9 0 1 "" NA12156 nsv7728 11 31781480 31826515 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8896 S 9 0 1 "" NA12156 nsv7729 11 31906626 31941623 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3940 S 9 1 0 "" NA12878 nsv39037 11 31923749 31925874 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57615 M 24 "" nsv832107 11 31966117 32145700 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449097,nssv1449094,nssv1449096 M 95 3 0 "" nsv7730 11 32041324 32065599 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1001 S 9 1 0 "" NA19240 nsv39810 11 32075460 32076469 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv58388 M 24 "" nsv7731 11 32169834 32201531 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10813 S 9 1 0 "" NA18956 nsv39576 11 32243217 32243549 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv58154 M 24 "" nsv518414 11 32327791 32332245 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695849 S 2026 0 1 "" nsv832108 11 32352513 32517159 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449098,nssv1449100,nssv1449099 M 95 0 3 "" nsv832109 11 32617890 32787125 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449101 S 95 1 0 "" essv7540 11 32671219 33006516 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18545 essv6421 11 32749360 32915185 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18545 esv34742 11 32752668 32960600 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6986849,essv6979389,essv6990358,essv6979388 M 771 1 0 "" NA18545 nsv38614 11 32942904 32944066 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57192 M 24 "" nsv467786 11 33021970 33433279 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542975 S 1557 1 0 "" 1780854545_A nsv521130 11 33024965 33559489 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv682795,nssv682672,nssv685366 M 2026 3 0 "" dgv11n68 11 33286162 33504263 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH nsv832111,nsv832110 M 95 2 0 "" nsv467787 11 33339661 33497252 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542976 S 1557 1 0 "" 1780854328_A nsv7732 11 33386088 33431268 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8897 S 9 0 1 "" NA12156 nsv832112 11 33426358 33639628 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449104 S 95 1 0 "" nsv832113 11 33565778 33724357 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449105 S 95 1 0 "" nsv523356 11 33733910 33753984 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699105 S 2026 0 1 "" nsv509398 11 33792687 33838431 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621181 S 4 1 0 "" NA15510 nsv526555 11 33825183 33842870 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702869 S 2026 0 1 "" nsv519717 11 33837005 33843123 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv657832,nssv690123 M 2026 0 2 "" nsv509399 11 33909147 34002046 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621183 S 4 1 0 "" NA15510 nsv39346 11 34004296 34004296 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57924 M 24 "" nsv509400 11 34088858 34210610 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621186 S 4 1 0 "" NA15510 nsv523431 11 34148668 34156425 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699186 S 2026 0 1 "" nsv517429 11 34153060 34156425 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv681272,nssv652320,nssv690493,nssv653953,nssv665303,nssv652757,nssv670360,nssv660240,nssv667359,nssv667767,nssv661975,nssv656242,nssv667868,nssv664626,nssv688737,nssv656071,nssv672505,nssv682079,nssv675826,nssv687773,nssv666277,nssv677938,nssv670875,nssv662727,nssv688065 M 2026 0 25 "" nsv442225 11 34177080 34179952 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" essv24323 11 34177080 34326812 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA11882 nsv8806 11 34177130 34182945 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20155 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18980 nsv515783 11 34187093 34193868 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv659705,nssv677719,nssv671464,nssv664772,nssv674117 M 2026 0 5 "" nsv818809 11 34196306 34310652 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418090 S 112 0 1 "" NA11882 nsv509401 11 34233109 34307135 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621189 S 4 1 0 "" NA15510 nsv818810 11 34294140 34310652 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417666 S 112 0 1 "" NA18994 essv196 11 34294918 34315052 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18994 nsv508622 11 34307135 34319760 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622442 S 4 0 1 "" NA18994 nsv832114 11 34381004 34564427 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449107 S 95 1 0 "" nsv832116 11 34496112 34630476 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449108,nssv1449109,nssv1449110 M 95 3 0 "" nsv526845 11 34581815 34589348 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703203 S 2026 0 1 "" nsv507589 11 34588018 34594018 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622832 S 4 1 0 "" NA18994 nsv832117 11 34595584 34787775 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449113,nssv1449114,nssv1449112,nssv1449111 M 95 0 4 "" dgv63n21 11 34599069 34737512 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv519718,nsv518807 M 2026 2 0 "" nsv832118 11 34699699 34860527 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449115 S 95 1 0 "" nsv832119 11 34772104 34965946 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449116 S 95 1 0 "" nsv8807 11 34868743 34886865 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22993 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18972 essv21365 11 34869891 34893266 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA10860 esv34511 11 34870700 34899412 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6978538,essv6978539 M 771 0 1 "" NA11992 essv22260 11 34870713 34920304 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA11992 nsv437715 11 34898070 34908569 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467596 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19145 nsv518924 11 34899152 34900947 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696384 S 2026 0 1 "" nsv437716 11 34905162 34906772 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467597 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18506 dgv361e1 11 34986509 35195154 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv12469,essv11606 M 271 0 0 "" NA19207 nsv508623 11 35051509 35159939 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618694,nssv622446 M 4 0 2 "" NA10860,NA18994 nsv39411 11 35160029 35160029 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57989 M 24 "" nsv7733 11 35221543 35254186 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10814 S 9 1 0 "" NA18956 nsv832120 11 35233986 35446880 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449118 S 95 1 0 "" essv13578 11 35275896 35437098 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19160 nsv508624 11 35474005 35553245 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620204 S 4 0 1 "" NA15510 nsv526788 11 35524851 35536465 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703140 S 2026 0 1 "" nsv832121 11 35530292 35665813 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449119 S 95 1 0 "" nsv832122 11 35890336 36060324 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449120 S 95 1 0 "" esv2422305 11 35906274 36945491 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161290 S 181 1 0 "" ND04019 nsv7735 11 35976556 36010662 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1002 S 9 1 0 "" NA19240 nsv467791 11 36065073 36955961 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542977 S 1557 1 0 "" NINDS_178 nsv516850 11 36081666 36082328 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700991,nssv679072,nssv657231,nssv691056,nssv679396,nssv671764,nssv654437,nssv675223,nssv685087,nssv690303,nssv673985,nssv674897 M 2026 0 12 "" nsv510248 11 36210906 36216906 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618340 S 4 0 1 "" CHM nsv526434 11 36276771 36277568 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702737 S 2026 0 1 "" esv32924 11 36292648 36292871 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93339 S 51 0 1 "" 22170 esv33552 11 36298611 36299100 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93106 S 51 1 0 "" 21863 esv32890 11 36299628 36300413 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93373 S 51 1 0 "" 22170 nsv518499 11 36423390 36436365 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694243 S 2026 0 1 "" nsv7736 11 36509323 36523222 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1932,nssv5353 M 9 2 0 "" NA18555,NA19129 nsv832123 11 36539448 36714019 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449122,nssv1449121 M 95 2 0 "" nsv467792 11 36580763 36854949 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542978 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00828 nsv518415 11 36600652 36618299 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695850 S 2026 0 1 "" nsv8808 11 36835873 37069944 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22722 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18517 essv4311 11 37079701 37100001 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18564 nsv8809 11 37083696 37094027 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19968 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18564 nsv7737 11 37160971 37193803 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5354 S 9 1 0 "" NA19129 nsv528788 11 37301022 37334900 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705458 S 2026 0 1 "" nsv39619 11 37405381 37405472 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv58197 M 24 "" nsv516326 11 37645003 37662114 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv687127,nssv688612,nssv667593,nssv673289,nssv660555,nssv690653,nssv656694,nssv688698 M 2026 0 8 "" nsv526145 11 37723835 37814433 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702400 S 2026 1 0 "" nsv510249 11 37736377 37742377 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622007 S 4 0 1 "" NA10860 nsv516010 11 37746989 37788198 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv655422,nssv658089,nssv658293,nssv665702 M 2026 4 0 "" nsv832124 11 37753739 37924311 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449123 S 95 1 0 "" nsv467797 11 37782466 37852240 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542980 S 1557 0 1 "" 1780862042_A nsv467798 11 37846022 37907236 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542981 S 1557 0 1 "" 1780862358_A nsv517227 11 37907236 37907498 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv684128,nssv654068,nssv664669 M 2026 0 3 "" nsv467799 11 37907236 37963224 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542982 S 1557 0 1 "" 1798860114_A nsv38982 11 37918622 37918946 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57560 M 24 "" nsv7738 11 38084131 38120403 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8898 S 9 0 1 "" NA12156 nsv520017 11 38087375 38103968 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697179 S 2026 1 0 "" nsv467806 11 38087375 38278782 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542984 S 1557 0 1 "" NINDS_103 nsv7739 11 38167296 38199038 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5355 S 9 1 0 "" NA19129 dgv138n27 11 38205782 38278782 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv467833,nsv467846,nsv467811,nsv467810,nsv467809 M 1557 0 5 "" 1780854299_A,1780862470_A,1780862547_A,NINDS_222,NINDS_228 nsv467825 11 38205782 38296860 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542989 S 1557 0 1 "" 1782681169_A nsv526282 11 38208761 38357792 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702561 S 2026 0 1 "" nsv467847 11 38221290 38341414 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542995 S 1557 0 1 "" NINDS_183 dgv139n27 11 38242077 38282959 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv467857,nsv467856,nsv467855,nsv467851 M 1557 0 4 "" 1780854462_A,1780854525_A,1780862101_A,HGDP00023 dgv64n21 11 38249818 38278782 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv526105,nsv525120 M 2026 0 2 "" nsv526510 11 38255185 38272160 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702820 S 2026 1 0 "" nsv527564 11 38263161 38270829 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704025 S 2026 0 1 "" nsv832125 11 38318239 38489863 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449124 S 95 1 0 "" nsv467858 11 38334468 38341414 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543001 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01228 nsv518072 11 38357792 38363752 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695486 S 2026 0 1 "" nsv7740 11 38372957 38381250 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8899 S 9 0 1 "" NA12156 nsv7741 11 38375581 38409015 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1004 S 9 1 0 "" NA19240 nsv526941 11 38401344 38415508 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703309 S 2026 0 1 "" essv13395 11 38401344 38417833 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18872 dgv362e1 11 38401344 38437928 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1251,essv13254 M 271 0 0 "" NA19201 dgv363e1 11 38410997 38424689 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv8538,essv8016 M 271 0 0 "" NA18523,NA18871 nsv442226 11 38414524 38419763 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv517589 11 38415104 38415508 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv685367,nssv685865,nssv669493,nssv662189,nssv656349,nssv685030,nssv677083,nssv685287,nssv677520,nssv667057,nssv691100,nssv686701,nssv661740,nssv680336,nssv652450,nssv657067 M 2026 0 16 "" nsv832127 11 38589418 38679110 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449126,nssv1449125 M 95 2 0 "" nsv523298 11 38664229 38676344 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699038 S 2026 0 1 "" nsv526476 11 38671135 38676344 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702782 S 2026 0 1 "" nsv7742 11 38735467 38770185 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3941 S 9 1 0 "" NA12878 nsv523676 11 38797635 38864923 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699480 S 2026 0 1 "" nsv522970 11 38821406 38864923 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698640 S 2026 0 1 "" nsv524302 11 38846707 38863746 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700203 S 2026 0 1 "" nsv467862 11 38846707 38965147 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543003 S 1557 0 1 "" 1780854196_A nsv520738 11 38859789 38864923 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697583 S 2026 0 1 "" nsv818812 11 38859789 38864923 CNV Gain+Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416473,nssv1416474 M 112 1 1 "" NA18516,NA18517 nsv526586 11 38863746 38864923 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702904 S 2026 0 1 "" nsv467863 11 38928526 39029545 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543004 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00822 nsv526541 11 38934208 38934847 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702855 S 2026 0 1 "" nsv818813 11 38974855 38990293 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416475,nssv1416476 M 112 0 2 "" NA18515,NA18517 nsv527683 11 38990131 38990293 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704159 S 2026 0 1 "" nsv517903 11 38990293 39007468 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695312 S 2026 0 1 "" nsv38980 11 39326540 39327116 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57558 M 24 "" nsv7743 11 39339129 39384469 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6456 S 9 0 1 "" NA12156 nsv39333 11 39761691 39762025 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57911 M 24 "" nsv528792 11 39779484 39780443 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705463 S 2026 0 1 "" nsv527662 11 39779484 39786442 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704134 S 2026 0 1 "" nsv518169 11 39886205 39888694 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695590 S 2026 0 1 "" nsv518117 11 39886205 39904380 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695533 S 2026 0 1 "" dgv65n21 11 40027599 40228018 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv524741,nsv528205 M 2026 2 0 "" nsv527603 11 40102200 40106260 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704065 S 2026 0 1 "" nsv39488 11 40196740 40196820 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv58066 M 24 "" nsv7744 11 40215191 40259577 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4625 S 9 0 1 "" NA19129 nsv508625 11 40217126 40225261 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622448 S 4 0 1 "" NA18994 nsv507590 11 40218487 40224487 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619043 S 4 1 0 "" NA10860 nsv467865 11 40224673 40254886 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543005 S 1557 0 1 "" NINDS_94 nsv510250 11 40409921 40415921 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623893,nssv618341 M 4 0 2 "" CHM,NA18994 nsv467866 11 40447808 40472369 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543006 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00151 nsv526365 11 40466108 40486821 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702659 S 2026 0 1 "" nsv832128 11 40510250 40642314 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449129,nssv1449130,nssv1449127 M 95 1 2 "" esv2751023 11 40570563 40739627 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6989218,essv6981051,essv6981052,essv6987901 M 771 0 1 "" BEC_345 nsv39060 11 40643446 40643496 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57638 M 24 "" nsv520942 11 40721344 40729192 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv684709,nssv678118 M 2026 0 2 "" nsv818814 11 40739867 40747200 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417454 S 112 0 1 "" NA18953 nsv7746 11 40812713 40830525 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1005 S 9 1 0 "" NA19240 nsv7747 11 40832801 40867391 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2862 S 9 1 0 "" NA18555 dgv364e1 11 40879434 41039419 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv10725,esv174 M 271 0 0 "" NA18523 nsv8810 11 40984262 40986874 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19686 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA10863 nsv38933 11 41053141 41053262 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57511 M 24 "" essv7516 11 41075935 41157340 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18532 dgv365e1 11 41075935 41290487 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv6125,esv760 M 271 0 0 "" NA18532 nsv832129 11 41145833 41340204 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449131 S 95 1 0 "" nsv523225 11 41157340 41385931 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698948 S 2026 1 0 "" nsv8811 11 41213437 41218069 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23555 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18860 nsv832130 11 41263044 41430768 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449132 S 95 1 0 "" nsv520201 11 41266550 41280989 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697277 S 2026 0 1 "" nsv523070 11 41273564 41280989 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698758 S 2026 0 1 "" nsv442227 11 41295844 41303860 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv39572 11 41466920 41466920 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv58150 M 24 "" nsv832131 11 41589740 41753621 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449134,nssv1449133,nssv1449136,nssv1449135 M 95 2 2 "" nsv39593 11 41946636 41946636 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv58171 M 24 "" nsv832132 11 42056984 42258565 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449137 S 95 0 1 "" nsv7748 11 42079111 42124106 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8900 S 9 0 1 "" NA12156 nsv518073 11 42081025 42091145 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695487 S 2026 0 1 "" nsv525962 11 42081025 42095879 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702173 S 2026 0 1 "" nsv528648 11 42081025 42099011 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705281 S 2026 1 0 "" nsv519751 11 42081025 42203294 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697031 S 2026 0 1 "" nsv518346 11 42091145 42095879 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695774 S 2026 0 1 "" nsv7749 11 42183725 42207183 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9269 S 9 1 0 "" NA18517 nsv38868 11 42420675 42420985 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57446 M 24 "" nsv832133 11 42591154 42798198 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449138 S 95 0 1 "" nsv832134 11 42681566 42841588 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449140,nssv1449141 M 95 2 0 "" nsv7750 11 42766367 42782795 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9943 S 9 0 1 "" NA18507 nsv511002 11 42767853 42839786 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622355 S 4 0 0 "" NA10860 nsv442609 11 42769727 42774615 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv832135 11 42779485 42963144 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449142 S 95 0 1 "" nsv507591 11 42814633 42820633 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620759,nssv617813,nssv622849 M 4 3 0 "" CHM,NA15510,NA18994 nsv522240 11 42908857 42929829 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694147 S 2026 1 0 "" nsv521235 11 42925451 42929829 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv688240,nssv687042 M 2026 2 0 "" nsv818815 11 42925451 42929829 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418014,nssv1418037,nssv1418091,nssv1417057,nssv1415986,nssv1418093,nssv1416862,nssv1418048,nssv1415985 M 112 9 0 "" NA06985,NA06991,NA06994,NA07357,NA10859,NA11882,NA12740,NA12751,NA19238 nsv442228 11 42926159 42927743 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv7751 11 43008622 43042829 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1006 S 9 1 0 "" NA19240 nsv521880 11 43066630 43071758 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694651 S 2026 0 1 "" nsv7752 11 43072587 43104052 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10815 S 9 1 0 "" NA18956 nsv519819 11 43388622 43429683 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694348 S 2026 1 0 "" nsv7753 11 43430795 43464494 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8901 S 9 1 0 "" NA12156 dgv66n21 11 43516567 43538768 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv524728,nsv522547 M 2026 0 2 "" nsv832136 11 43667546 43786170 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449147,nssv1449146,nssv1449145,nssv1449144,nssv1449143,nssv1449152,nssv1449151,nssv1449148,nssv1449153,nssv1449158,nssv1449157,nssv1449154,nssv1449155,nssv1449159,nssv1449156,nssv1449149 M 95 15 1 "" nsv7754 11 43683794 43718337 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2863 S 9 1 0 "" NA18555 nsv7755 11 43742454 43776532 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8902 S 9 1 0 "" NA12156 nsv832138 11 43757106 43944580 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449160 S 95 1 0 "" nsv528546 11 43759689 43770352 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705158 S 2026 0 1 "" nsv39218 11 43848421 43848756 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57796 M 24 "" nsv467867 11 43875987 43906087 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543007 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01303 nsv524626 11 43960711 43977889 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700588 S 2026 0 1 "" nsv301 11 43963232 43988590 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1007 S 9 1 0 "" NA19240 nsv302 11 43973991 44019293 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8903 S 9 0 1 "" NA12156 nsv520765 11 43997850 44002927 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697598 S 2026 1 0 "" nsv510251 11 44022914 44028914 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622014,nssv621552,nssv623899 M 4 0 3 "" NA10860,NA15510,NA18994 nsv832139 11 44041807 44255773 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449162,nssv1449163 M 95 0 2 "" nsv523327 11 44042263 44049873 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699071 S 2026 1 0 "" dgv67n21 11 44229098 44255197 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv526910,nsv517357 M 2026 0 14 "" nsv509403 11 44361325 44407835 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619298 S 4 1 0 "" NA10860 nsv818816 11 44378143 44405514 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417719 S 112 1 0 "" NA18999 nsv303 11 44476300 44510219 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8904 S 9 1 0 "" NA12156 nsv525321 11 44553393 44558532 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701431 S 2026 1 0 "" nsv522766 11 44563908 44570247 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698406 S 2026 0 1 "" nsv832140 11 44759051 44925353 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449164 S 95 0 1 "" nsv304 11 44823984 44868878 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8905 S 9 0 1 "" NA12156 nsv510252 11 44863021 44869021 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622017 S 4 0 1 "" NA10860 nsv523057 11 45131106 45138258 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698740 S 2026 0 1 "" nsv305 11 45215401 45218823 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3943 S 9 1 0 "" NA12878 nsv467869 11 45345801 45371611 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543008 S 1557 0 1 "" 1780862563_A nsv306 11 45370620 45401007 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8906 S 9 0 1 "" NA12156 nsv307 11 45791371 45826435 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3944 S 9 1 0 "" NA12878 nsv516442 11 45856538 45939961 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv670466,nssv660449,nssv679890,nssv692112,nssv657130,nssv679215,nssv682694,nssv655354,nssv691218,nssv655057,nssv663772,nssv675721,nssv668447,nssv682952,nssv690191 M 2026 0 15 "" nsv523952 11 45939961 45984857 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699800 S 2026 1 0 "" nsv38731 11 45950033 45955262 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57309 M 24 "" nsv522527 11 45980759 45989680 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705899 S 2026 0 1 "" nsv308 11 46198863 46244118 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8907 S 9 0 1 "" NA12156 nsv309 11 46356254 46397079 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8908 S 9 0 1 "" NA12156 nsv38662 11 46608858 46608988 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57240 M 24 "" nsv310 11 46868730 46902013 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1933 S 9 1 0 "" NA18555 nsv510253 11 46991641 46997641 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618342 S 4 0 1 "" CHM nsv312 11 47003823 47028973 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6457,nssv3945 M 9 0 2 "" NA12156,NA12878 nsv508627 11 47009235 47040583 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618708,nssv622459 M 4 0 2 "" NA10860,NA18994 esv33095 11 47010857 47021343 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101485,essv97506,essv101229,essv100703,essv98244,essv94698,essv94049,essv96965,essv93037,essv96620,essv97091,essv97999,essv100145,essv100422,essv98444 M 51 0 15 "" 21603,21616,21618,21656,21772,21791,21802,21817,21863,22011,22075,22259,22286,22300,22352 nsv313 11 47072240 47106390 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8910 S 9 1 0 "" NA12156 nsv526628 11 47121682 47124830 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702950 S 2026 0 1 "" nsv832141 11 47289756 47477569 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449165 S 95 0 1 "" nsv509404 11 47313431 47349825 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623373 S 4 1 0 "" NA18994 nsv832142 11 47474531 47637886 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449168,nssv1449167,nssv1449166 M 95 0 3 "" nsv314 11 47518140 47562832 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8911 S 9 0 1 "" NA12156 nsv509405 11 47549166 47641232 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619312,nssv623376 M 4 2 0 "" NA10860,NA18994 nsv469858 11 47604091 47793748 CNV Gain Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649879 M 265 1 0 Samples from several populations that are part of the HapMap project. "" nsv69 11 47609019 47623008 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv69 S 1 1 0 "" NA15510 nsv315 11 47609019 47638236 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3946,nssv10891,nssv2864,nssv6458,nssv1008 M 9 5 0 "" NA12156,NA12878,NA15510,NA18555,NA19240 nsv832143 11 47657384 47840116 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449169 S 95 0 1 "" nsv316 11 47845449 47897449 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3947,nssv10816,nssv1935 M 9 3 0 "" NA12878,NA18555,NA18956 nsv509406 11 47848394 47873474 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621207,nssv623378,nssv619317 M 4 3 0 "" NA10860,NA15510,NA18994 nsv317 11 47952479 47963842 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8912 S 9 0 1 "" NA12156 nsv528641 11 47960945 47999629 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705272 S 2026 0 1 "" nsv39746 11 47967034 47967400 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv58324 M 24 "" nsv467871 11 48063062 48651447 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543009 S 1557 1 0 "" 1780862521_A nsv467873 11 48171568 48343851 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543011 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00984 nsv508628 11 48230730 48316319 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618711 S 4 0 1 "" NA10860 dgv366e1 11 48260247 48956881 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv24383,essv24955,essv20516 M 271 0 0 "" NA12707,NA12716 esv542 11 48260247 49141766 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent + Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 "" nsv510254 11 48262444 48268444 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621556,nssv618343,nssv623916 M 4 0 3 "" CHM,NA15510,NA18994 nsv8812 11 48283862 48285680 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18335,nssv18262,nssv17980,nssv19850,nssv20327,nssv19646,nssv18191,nssv23583,nssv21028,nssv22781,nssv19984,nssv20249,nssv22291,nssv20499,nssv23021,nssv22213,nssv20708,nssv18289,nssv22482,nssv19995,nssv19696,nssv19022,nssv22881,nssv19716,nssv25211,nssv19998,nssv20185,nssv20767 M 31 28 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA10839,NA10847,NA10863,NA11830,NA12155,NA12740,NA12802,NA12872,NA18502,NA18504,NA18517,NA18537,NA18552,NA18563,NA18564,NA18572,NA18853,NA18860,NA18942,NA18972,NA18980,NA19007,NA19132,NA19144,NA19173,NA19221,NA19240 esv33256 11 48284286 48284573 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93091,essv92921,essv96684,essv93183 M 51 0 4 "" 21863,21939,22011,22170 dgv48e55 11 48302778 48929078 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv34690,esv34253,esv2751025 M 771 0 3 "" NA12707,NA12716,SPC_25 nsv318 11 48319458 48348830 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3948 S 9 1 0 "" NA12878 nsv39760 11 48324105 48330285 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv58338 M 24 "" nsv39341 11 48335330 48335330 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57919 M 24 "" nsv832144 11 48393119 48548547 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449170 S 95 0 1 "" nsv39544 11 48403683 48413500 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv58122 M 24 "" nsv467874 11 48461172 49913339 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543012 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00656 esv2751026 11 48491347 48548668 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6982588,essv6989653 M 771 0 1 "" BEC_569 nsv508629 11 48546950 48565127 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617388,nssv618712,nssv619917 M 4 0 3 "" CHM,NA10860,NA15510 nsv38551 11 48557433 48560858 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57129 M 24 "" nsv38629 11 48565907 48565907 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57207 M 24 "" nsv39345 11 48565911 48565911 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57923 M 24 "" nsv8814 11 48615838 48858172 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22512 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18502 nsv433414 11 48675981 48807363 CNV Gain Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463295 S 9 1 0 Samples from several populations that are part of the HapMap project. "" NA18507 nsv433415 11 48675981 48911561 CNV Gain Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463296 S 9 1 0 Samples from several populations that are part of the HapMap project. "" NA12878 nsv508630 11 48681753 48780566 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618714 S 4 0 1 "" NA10860 nsv442229 11 48729238 48740069 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv509407 11 48783754 48826966 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623383 S 4 1 0 "" NA18994 essv4365 11 48806924 49141766 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18573 nsv433416 11 48807163 48899026 CNV Gain Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463297 S 9 1 0 Samples from several populations that are part of the HapMap project. "" NA19240 nsv442610 11 48843099 48849795 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv8815 11 48859089 48862899 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19726 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18552 nsv509408 11 48866537 48916799 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620770,nssv619335,nssv623388 M 4 3 0 "" NA10860,NA15510,NA18994 nsv8816 11 48873783 48877592 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19786 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18552 essv5268 11 48881992 49024200 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18624 essv6496 11 48940894 49025210 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18636 nsv832145 11 48959449 49141766 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449173,nssv1449171 M 95 2 0 "" nsv8817 11 48996501 49002444 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19816,nssv20279,nssv22810,nssv20357,nssv21058,nssv18319,nssv18292,nssv19880,nssv20768 M 31 9 0 Samples from several populations that are part of the HapMap project. "" NA12155,NA18517,NA18552,NA18563,NA18572,NA18853,NA18942,NA19144,NA19173 nsv8818 11 49038280 49055096 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20025,nssv22542,nssv25236,nssv22910,nssv23049,nssv20529 M 31 0 6 Samples from several populations that are part of the HapMap project. "" NA12740,NA18502,NA18537,NA18972,NA19132,NA19221 nsv442611 11 49044557 49060262 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv8819 11 49072572 49076254 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21118,nssv20028,nssv19676,nssv20014,nssv19910,nssv22243,nssv20559,nssv22839,nssv23107 M 31 9 0 Samples from several populations that are part of the HapMap project. "" NA10839,NA12740,NA18504,NA18517,NA18564,NA18853,NA18972,NA19007,NA19144 nsv319 11 49080494 49100669 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8913 S 9 0 1 "" NA12156 nsv528414 11 49088883 49091877 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705006 S 2026 1 0 "" nsv525454 11 49112615 49527163 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701582 S 2026 0 1 "" nsv518571 11 49119524 49584409 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696014 S 2026 1 0 "" essv23230 11 49168813 49297907 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA07029 dgv367e1 11 49168813 49425542 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv525,essv9672 M 271 0 0 "" NA18913 dgv368e1 11 49238492 49317264 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv14209,essv13502 M 271 0 0 "" NA18913,NA18914 essv12054 11 49255043 49355549 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19238 nsv442230 11 49264380 49317267 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv467875 11 49267528 49394908 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543013 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01285 nsv818817 11 49283110 49314923 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416863 S 112 0 1 "" NA19238 nsv8820 11 49348121 49358342 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22939 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19132 dgv22n6 11 49381658 49382008 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv38744,nsv38497 M 24 "" nsv832146 11 49449525 49628881 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449174 S 95 1 0 "" essv14807 11 49538501 49715432 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18870 esv1190 11 49538501 49820388 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 "" essv18554 11 49594788 49726569 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA10851 dgv369e1 11 49618505 49715432 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv25129,essv18890,essv18667,essv18487,essv21091,essv21566 M 271 0 0 "" NA10854,NA10856,NA12056,NA12146,NA12156,NA12717 nsv832147 11 49618652 49799967 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449175 S 95 1 0 "" dgv370e1 11 49629519 49820388 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv20827,essv18058 M 271 0 0 "" NA06993,NA10855 nsv7216 11 49652853 49748929 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3949,nssv9821,nssv9820,nssv10817,nssv1936,nssv5356,nssv10892 M 9 0 0 "" NA12878,NA15510,NA18507,NA18555,NA18956,NA19129 esv33193 11 49655696 49709536 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101520,essv98823,essv96857,essv95740,essv98977,essv92896,essv93238 M 51 0 7 "" 21603,21606,21659,21841,21938,21939,22170 dgv371e1 11 49657987 49697457 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv19703,essv24541,essv20835,essv21889,essv25163,essv24195 M 271 0 0 "" NA06991,NA07056,NA11829,NA11831,NA11839,NA12236 dgv372e1 11 49657987 49726569 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv14827,essv8071,essv8537,essv21487,essv13215,essv13394,essv13948 M 271 0 0 "" NA10830,NA18523,NA18872,NA19119,NA19120,NA19160,NA19161 dgv373e1 11 49657987 49746262 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv8673,essv17376,essv16567 M 271 0 0 "" NA18855,NA19101,NA19193 nsv8821 11 49665251 49721982 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18010,nssv18349,nssv20215,nssv19194,nssv19983,nssv22273,nssv19776,nssv20798,nssv23611,nssv19052,nssv22868,nssv20589,nssv18322,nssv22321,nssv19846,nssv23135,nssv18221,nssv19940,nssv19706,nssv20387,nssv25261,nssv22572,nssv20058,nssv20309,nssv18365,nssv20055,nssv21148,nssv20044,nssv22968,nssv20797 M 31 30 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10847,NA10863,NA11830,NA12155,NA12740,NA12802,NA12872,NA18502,NA18504,NA18517,NA18537,NA18552,NA18563,NA18564,NA18572,NA18853,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19144,NA19173,NA19221,NA19240 nsv442612 11 49667437 49714078 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv433264 11 49669405 49734476 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463145 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA12156 essv23739 11 49670299 49697457 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12813 nsv511003 11 49672692 49725579 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622359,nssv618612,nssv621562,nssv624290 M 4 0 0 "" CHM,NA10860,NA15510,NA18994 esv33425 11 49688867 50074123 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99770 S 51 1 0 "" 22086 nsv70 11 49698283 49740901 OTHER Inversion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv70 S 1 0 0 "" NA15510 nsv442613 11 49716131 49717264 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv467876 11 49802136 50014430 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543014 S 1557 1 0 "" 1780854511_A nsv438184 11 49805757 49811283 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470328,nssv470329 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA19099,NA19240 nsv510255 11 49835807 49841807 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623927 S 4 0 1 "" NA18994 nsv511004 11 49991993 50005574 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622361,nssv618668,nssv621565 M 4 0 0 "" CHM,NA10860,NA15510 dgv49e55 11 49992100 51231886 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv2751028,esv2751027 M 771 2 0 "" SPC_180,SPC_50 esv34613 11 49992129 50083553 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6979109,essv6979110,essv6990327 M 771 1 0 "" NA12892 nsv509409 11 50005574 50005574 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623400 S 4 1 0 "" NA18994 essv12779 11 50013000 50245780 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19120 dgv374e1 11 50013000 50405768 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv642,essv8227,essv20666 M 271 0 0 "" NA12892,NA19116 nsv467877 11 50014430 50599126 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543015 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00519 nsv516340 11 50021328 51382454 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv660209,nssv677084,nssv666069,nssv657490,nssv704882,nssv672888,nssv702565,nssv690792,nssv667339,nssv698544,nssv699246,nssv653850,nssv700958,nssv686256,nssv667821,nssv690337,nssv703310,nssv674653,nssv701023,nssv672802,nssv692508,nssv658245,nssv689327,nssv677608,nssv681298,nssv671257,nssv694409,nssv686217,nssv652618,nssv654463,nssv672801,nssv657803,nssv661218,nssv694985,nssv683043,nssv693826,nssv685552,nssv653769,nssv676463,nssv692666,nssv652522,nssv658761,nssv697209,nssv697003,nssv661009,nssv680583,nssv689164,nssv699027,nssv661319,nssv687256,nssv652503,nssv679267,nssv654218,nssv683799,nssv653534,nssv677785,nssv678906,nssv670581,nssv675018,nssv702732,nssv659067,nssv657154,nssv660582,nssv695009,nssv669468,nssv675999,nssv670062,nssv652798,nssv698543,nssv678803,nssv664448,nssv659655,nssv671844,nssv685938,nssv687203,nssv692089,nssv657984,nssv669638,nssv696135,nssv684855,nssv668400,nssv658344 M 2026 14 68 "" nsv7217 11 50047247 50337552 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3950 S 9 0 0 "" NA12878 nsv8822 11 50048783 50052500 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20339 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19173 nsv469594 11 50050300 50242456 CNV Gain Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649709 M 265 1 0 Samples from several populations that are part of the HapMap project. "" nsv433417 11 50052136 50091253 CNV Gain Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463298 S 9 1 0 Samples from several populations that are part of the HapMap project. "" NA12878 nsv818818 11 50052490 50078577 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416177,nssv1416176 M 112 2 0 "" NA12878,NA12892 nsv511005 11 50071838 50270951 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624291 S 4 0 0 "" NA18994 nsv832149 11 50098692 50273027 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449176,nssv1449180,nssv1449177,nssv1449179,nssv1449178 M 95 5 0 "" essv12037 11 50128453 50332876 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19116 esv34231 11 50150660 50330714 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6978474,essv6986626,essv6978475 M 771 1 0 "" NA19116 nsv467878 11 50194788 50335541 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543016 S 1557 1 0 "" 1780862347_A nsv818819 11 50205110 50249096 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416659,nssv1416661 M 112 2 0 "" NA19116,NA19120 dgv375e1 11 50230022 50405768 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv21336,essv25063 M 271 0 0 "" NA12878,NA12892 nsv8823 11 50233483 50235745 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19806,nssv20104,nssv18251,nssv20828,nssv20827 M 31 0 5 Samples from several populations that are part of the HapMap project. "" NA10839,NA10863,NA11830,NA12155,NA12872 nsv433418 11 50260700 50338326 CNV Gain Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463299 S 9 1 0 Samples from several populations that are part of the HapMap project. "" NA12878 nsv832150 11 50285670 50444161 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449181 S 95 1 0 "" nsv818820 11 50288640 50335541 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416178,nssv1416179 M 112 2 0 "" NA12878,NA12892 dgv140n27 11 50396846 50599126 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv467881,nsv467879 M 1557 0 2 "" HGDP00110,HGDP00932 dgv141n27 11 50396846 50599126 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv467880,nsv467882 M 1557 2 0 "" HGDP00517,HGDP00576 nsv818821 11 50578631 50669978 CNV Gain+Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417776,nssv1417777 M 112 1 1 "" NA12234,NA12264 nsv469737 11 51030383 51194096 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649758 M 265 0 0 Samples from several populations that are part of the HapMap project. "" esv2751029 11 51049400 51420212 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6983900,essv6983901,essv6983902 M 771 1 0 "" BEC_730 nsv320 11 51146476 51166658 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2865 S 9 1 0 "" NA18555 nsv442614 11 51209566 51213821 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv142n27 11 51228612 51385578 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv467885,nsv467884 M 1557 2 0 "" 1780854337_A,HGDP01208 nsv832151 11 51234635 51421925 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449182 S 95 0 1 "" nsv442615 11 54458221 54514519 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" esv2751030 11 54592199 55636002 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6986364,essv6983189,essv6983190 M 771 1 0 "" BEC_552 nsv508631 11 54599360 54787236 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618722,nssv618728 M 4 0 1 "" NA10860 nsv524091 11 54631614 55279125 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699964 S 2026 1 0 "" nsv442616 11 54722184 54793048 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv832152 11 54747038 54838707 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449186,nssv1449185 M 95 1 1 "" nsv321 11 54785343 54827835 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1937 S 9 0 1 "" NA18555 nsv832153 11 54824911 54999407 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449187 S 95 0 1 "" dgv68n21 11 54840010 54913010 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv528911,nsv522655 M 2026 0 2 "" nsv467886 11 54840010 55165276 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543024 S 1557 1 0 "" 1780854337_A esv2751031 11 54878282 55097329 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6987983,essv6989249,essv6981565,essv6981566,essv6987984 M 771 0 1 "" BEC_301 nsv8825 11 54905945 54908056 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20115 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18537 nsv821668 11 54910506 55573404 CNV Loss Sebat_et_al_2004 15273396 ROMA Custom Nimblegen photoprint 85000 probe ROMA oligo array nssv1421242 S 31 0 1 "" nsv524882 11 54910725 54929069 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700888 S 2026 0 1 "" nsv518225 11 54928253 55165276 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695649 S 2026 0 1 "" esv33769 11 54940302 55015267 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101262 S 51 0 1 "" 21618 nsv8826 11 54969740 54979633 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23639,nssv22602,nssv20857,nssv20858,nssv20245,nssv22997 M 31 0 6 Samples from several populations that are part of the HapMap project. "" NA11830,NA12155,NA18502,NA18860,NA18980,NA19132 dgv376e1 11 54978996 55268838 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv19578,essv21821 M 271 0 0 "" NA11839,NA12864 esv782 11 54978996 55394688 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent + Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 "" dgv12n68 11 54979003 55189242 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH nsv832154,nsv832155 M 95 0 3 "" esv2751032 11 55033178 55112298 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6989979,essv6984542 M 771 0 1 "" BEC_717 dgv377e1 11 55073652 55268838 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv28,essv5099,essv3472,essv567,essv4545,essv921,essv11623,essv17565,essv6312,essv15899,essv10123,essv20181,essv7115,essv9202,essv5294,essv12257,essv23802,essv19461,essv1728,essv21031,essv20023,essv9676,essv22861,essv13010,essv23967,essv24992,essv6187,essv5508,essv17979,essv451,essv4475,essv780,essv24692,essv15072,essv177,essv348 M 271 0 0 "" NA06991,NA07048,NA10839,NA11829,NA11832,NA11840,NA12003,NA12760,NA12762,NA12763,NA12814,NA18524,NA18532,NA18537,NA18552,NA18577,NA18609,NA18624,NA18632,NA18859,NA18913,NA18952,NA18956,NA18968,NA18971,NA18991,NA18992,NA18997,NA18998,NA19000,NA19101,NA19128,NA19129,NA19130,NA19154,NA19223 nsv522846 11 55079115 55152617 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698499 S 2026 1 0 "" dgv378e1 11 55096278 55209410 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv24543,essv25144,essv20840,essv14220,essv20821 M 271 0 0 "" NA10855,NA11829,NA11831,NA11839,NA18913 dgv379e1 11 55096405 55176235 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv17694,essv598 M 271 0 0 "" NA10835,NA18947 dgv143n27 11 55096405 55204003 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv467887,nsv467888 M 1557 0 2 "" 1780862071_A,HGDP00106 nsv517440 11 55096955 55360988 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv665554,nssv685510,nssv680593,nssv671906,nssv661219,nssv684750,nssv687847,nssv654639,nssv689569,nssv660610,nssv670797,nssv674269,nssv676501,nssv683704,nssv652758,nssv701053,nssv681210,nssv685008,nssv674247,nssv681822,nssv681734,nssv675539,nssv689827,nssv681097,nssv681952,nssv661064,nssv693542,nssv676372,nssv692604,nssv677690,nssv688255,nssv667768,nssv692024,nssv677587,nssv665703,nssv652378,nssv687838,nssv657108,nssv659099,nssv682824,nssv685939,nssv654946,nssv674524,nssv655519,nssv669271,nssv677609,nssv686671,nssv686859,nssv669048,nssv678502,nssv692324,nssv666586,nssv660987,nssv679041,nssv685196,nssv654750,nssv687809,nssv688102,nssv670023,nssv693827,nssv684710,nssv663793,nssv657736,nssv657575,nssv690882,nssv660485,nssv692143,nssv658591,nssv692444,nssv667222,nssv665915,nssv687574,nssv659815,nssv666093,nssv685395,nssv668579,nssv654663,nssv656944,nssv688149,nssv693278,nssv663439,nssv669089,nssv665513,nssv652955,nssv651974,nssv670982,nssv663146,nssv665835,nssv658850,nssv653566,nssv670414,nssv662264,nssv687204,nssv663697,nssv675626,nssv658967,nssv652574,nssv673865,nssv692187,nssv681639,nssv660647,nssv655643,nssv654491,nssv690586,nssv655023,nssv676000,nssv688903,nssv668401,nssv661594,nssv670090,nssv693715,nssv682196,nssv693144,nssv678165,nssv661137,nssv678771,nssv660731,nssv673632,nssv657609,nssv693563,nssv687652,nssv659935,nssv661896,nssv668948,nssv682953,nssv655204,nssv672366,nssv665008,nssv655729,nssv689851,nssv681031,nssv674299,nssv659009,nssv668345,nssv670951,nssv687000,nssv676731,nssv674019,nssv688501,nssv691291,nssv662709,nssv660864,nssv663355,nssv677085,nssv655275,nssv653134,nssv653881,nssv668661,nssv660052,nssv689033,nssv685347,nssv682999,nssv663773,nssv659141,nssv683683,nssv676892,nssv660467,nssv678589,nssv657546,nssv668894,nssv661940,nssv662103,nssv676464,nssv681478,nssv683273,nssv669236,nssv693869,nssv661708,nssv693487,nssv669421,nssv689197,nssv691666,nssv687788,nssv669922,nssv672561,nssv672065,nssv676570,nssv681017,nssv690994,nssv666119,nssv666336,nssv675401,nssv664913,nssv683332,nssv660583,nssv674742,nssv665645,nssv659155,nssv687631,nssv655058,nssv684881,nssv653964,nssv677720,nssv669620,nssv682127,nssv668842,nssv671604,nssv665304,nssv662855,nssv673063,nssv683044,nssv677383,nssv656443,nssv680010,nssv687021,nssv692832,nssv672789,nssv667196,nssv684485,nssv673264,nssv684521,nssv680992,nssv663640,nssv658592,nssv666731,nssv661585,nssv664402,nssv688856,nssv656456,nssv670368,nssv652391,nssv693325,nssv679891,nssv664773,nssv657339,nssv665037,nssv689809,nssv669994,nssv666314,nssv686660,nssv680584,nssv679868,nssv670582,nssv680371,nssv676543,nssv656243,nssv667837,nssv657527,nssv682725,nssv677212,nssv659081,nssv693396,nssv692252,nssv683395,nssv684819,nssv675206,nssv703353,nssv685901,nssv679397,nssv657712,nssv677184,nssv678428,nssv679869,nssv675331,nssv676604,nssv659656,nssv673443,nssv679351,nssv668074,nssv656244,nssv685771,nssv680695,nssv688989,nssv679268,nssv684730,nssv673369,nssv656200,nssv681098,nssv677371,nssv658278,nssv679137,nssv660156,nssv690711,nssv669844,nssv684470,nssv688544,nssv655582,nssv682862,nssv686942,nssv659554,nssv672154,nssv656300,nssv679333,nssv689121,nssv655355,nssv653185,nssv670832,nssv659605,nssv684005,nssv668168,nssv654421,nssv661976,nssv691970,nssv664376,nssv658106,nssv666070,nssv675254,nssv679821,nssv692051,nssv658345,nssv667310,nssv658748,nssv681247,nssv657834,nssv666890,nssv677170,nssv657833,nssv677650,nssv664079,nssv654373,nssv667516,nssv652684,nssv666027,nssv670686,nssv680907,nssv688357,nssv692775,nssv660351,nssv676291,nssv678662,nssv684612,nssv659588,nssv671961,nssv658733,nssv675827,nssv670709,nssv674675,nssv691246,nssv658610,nssv683665,nssv657899,nssv669187,nssv688241,nssv666965,nssv663370,nssv693625,nssv682043,nssv665761,nssv667616,nssv671867,nssv653327,nssv652130,nssv687905,nssv672436,nssv679370,nssv656742,nssv672653,nssv674330,nssv657912,nssv692275,nssv669593,nssv662573,nssv666689,nssv668097,nssv664305,nssv670729,nssv676128,nssv655986,nssv679059,nssv684797,nssv656002,nssv689965,nssv693131,nssv653425,nssv689088,nssv663021,nssv666745,nssv681967,nssv667891,nssv660288,nssv664331,nssv669169,nssv687343,nssv692356,nssv656878,nssv691604,nssv659217,nssv660170,nssv662421,nssv687148,nssv667046,nssv689165,nssv664276,nssv693848,nssv653457,nssv653945,nssv686441,nssv692957,nssv676843,nssv656114,nssv675494,nssv684206,nssv690322,nssv662507,nssv675441,nssv675193,nssv667375,nssv682535,nssv688021,nssv669469,nssv688791,nssv663814,nssv693738,nssv667704,nssv666202,nssv678044,nssv668611,nssv687191,nssv661380,nssv675594,nssv672066,nssv684345,nssv669958,nssv673703,nssv654046,nssv667703,nssv664605,nssv689892,nssv662376,nssv669031,nssv679689,nssv701879,nssv676252,nssv685288,nssv656651,nssv657378,nssv653278,nssv681273,nssv680106,nssv700597,nssv680664,nssv652809,nssv652759,nssv662977,nssv665576,nssv687748,nssv653658,nssv680034,nssv652342,nssv652277,nssv672999,nssv652706,nssv663537,nssv665860,nssv675866,nssv687955,nssv673918,nssv662399,nssv678997,nssv669210,nssv700828,nssv660210,nssv669447,nssv655706,nssv656037,nssv661036,nssv663120,nssv674770,nssv662464,nssv685177,nssv670063,nssv701052,nssv668698,nssv670993,nssv690338,nssv679941,nssv668470,nssv665114,nssv681905,nssv682429,nssv658528,nssv689354,nssv671584,nssv665543,nssv686892,nssv689061,nssv678879,nssv672520,nssv686562,nssv681664,nssv687927,nssv656257,nssv660428,nssv673819,nssv686332,nssv671684,nssv654799,nssv692930,nssv651904,nssv688217,nssv664424,nssv665987,nssv675143,nssv677786,nssv687128,nssv693458,nssv674193,nssv675665,nssv672547,nssv680166,nssv654252,nssv670189,nssv653671,nssv685158,nssv688325,nssv680140,nssv681968,nssv690124,nssv657131,nssv698709,nssv678291,nssv690547,nssv665079,nssv691569,nssv688632,nssv690000,nssv651976,nssv652092,nssv691153,nssv652548,nssv693675,nssv664547,nssv688391,nssv683505,nssv659448,nssv691499,nssv652338,nssv659352,nssv669828,nssv681936,nssv676631,nssv682695,nssv664561,nssv653721,nssv675692,nssv672979,nssv690527,nssv663663,nssv661827,nssv672012,nssv684064,nssv672128,nssv693428,nssv678694,nssv674045,nssv660884,nssv658468,nssv687557,nssv662134,nssv672346,nssv662650,nssv669049,nssv682254,nssv669639 M 2026 41 513 "" nsv323 11 55115601 55226935 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10818,nssv10893 M 9 0 2 "" NA15510,NA18956 nsv71 11 55115601 55226935 CNV Loss Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv71 S 1 0 1 "" NA15510 nsv437717 11 55116232 55363269 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467598 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19211 nsv818824 11 55116789 55204003 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415908 S 112 1 0 "" NA11994 dgv144n27 11 55116789 55217364 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv467898,nsv468119,nsv468143,nsv468337,nsv467956,nsv468379,nsv468456,nsv468447,nsv468065,nsv467896,nsv467892,nsv468213,nsv468062,nsv467970,nsv468214,nsv467889,nsv467891,nsv467986,nsv467984,nsv468070,nsv468274,nsv467978,nsv467940,nsv468102,nsv468239,nsv468376,nsv468407,nsv468343,nsv468499,nsv467897,nsv468226,nsv468298,nsv468413,nsv468352,nsv468552,nsv468210,nsv468137,nsv468241,nsv467893,nsv468153,nsv468544,nsv468152,nsv468197,nsv468288,nsv468445,nsv468368,nsv468262,nsv467890,nsv467895 M 1557 49 0 "" 1780854129_A,1780854294_A,1780854325_A,1780862007_A,1780862066_A,1780862402_A,1780862408_A,1780862452_A,1798860371_A,1798860570_A,HGDP00341,HGDP00372,HGDP00433,HGDP00511,HGDP00520,HGDP00618,HGDP00670,HGDP00727,HGDP00736,HGDP00746,HGDP00759,HGDP00769,HGDP00773,HGDP00791,HGDP00881,HGDP00914,HGDP00917,HGDP00975,HGDP01001,HGDP01018,HGDP01021,HGDP01062,HGDP01103,HGDP01152,HGDP01157,HGDP01212,HGDP01241,HGDP01250,HGDP01273,HGDP01277,HGDP01279,HGDP01329,HGDP01371,NINDS_127,NINDS_240,NINDS_247,NINDS_254,NINDS_256,NINDS_58 dgv145n27 11 55116789 55227570 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv468234,nsv468100,nsv468502,nsv468133,nsv468034,nsv468306,nsv468361,nsv468388,nsv468036,nsv468008,nsv468538,nsv467967,nsv468048,nsv468396,nsv468272,nsv468263,nsv468113,nsv468028,nsv468187,nsv468186,nsv468386,nsv467944,nsv468177,nsv468267,nsv468430,nsv468191,nsv468144,nsv467990,nsv468351,nsv468398,nsv468099,nsv468323,nsv468317,nsv468366,nsv468198,nsv468553,nsv468427,nsv468002,nsv468042,nsv468474,nsv468202,nsv467999,nsv468115,nsv468419,nsv468148,nsv468178,nsv468408,nsv467930,nsv468375,nsv468340,nsv468358,nsv468519,nsv468507,nsv468515,nsv467988,nsv468243,nsv468531,nsv467977,nsv468432,nsv468195,nsv467955,nsv468244,nsv468535,nsv468044,nsv468455,nsv468441,nsv468258,nsv468554,nsv468147,nsv468350,nsv468437,nsv468247,nsv467907,nsv467923,nsv468486,nsv468055,nsv468233,nsv468255,nsv468523,nsv468212,nsv468200,nsv468052,nsv468063,nsv468240,nsv468276,nsv468372,nsv468084,nsv468156,nsv468307,nsv468510,nsv468059,nsv468332,nsv468404,nsv468348,nsv468329,nsv467976,nsv468073,nsv468029,nsv468157,nsv468173,nsv468341,nsv468420,nsv468093,nsv468000,nsv467958,nsv468453,nsv468401,nsv468037,nsv468080,nsv468354,nsv468421,nsv468192,nsv468389,nsv468309,nsv468280,nsv468347,nsv468516,nsv468478,nsv468488,nsv468168,nsv468251,nsv468024,nsv468344,nsv468125,nsv468159,nsv468438,nsv468103,nsv468030,nsv467969,nsv468339,nsv468525,nsv468155,nsv468451,nsv468007,nsv468170,nsv468300,nsv468324,nsv468078,nsv467922,nsv467936,nsv468546,nsv467904,nsv467960,nsv468257,nsv468549,nsv468081,nsv468423,nsv468193,nsv468435,nsv467899,nsv468256,nsv468387,nsv468018,nsv468268,nsv467935,nsv467931,nsv468129,nsv468167,nsv468292,nsv468110,nsv468112,nsv468356,nsv468462,nsv468252,nsv468318,nsv468514,nsv467918,nsv468009,nsv468047,nsv468032,nsv468098,nsv467939,nsv468492,nsv468106,nsv468520,nsv468310,nsv468527,nsv468308,nsv468273,nsv467975,nsv468235,nsv468117,nsv468275,nsv467989,nsv468301,nsv468058,nsv468426,nsv468006,nsv468118,nsv468077,nsv468364,nsv468017,nsv468547,nsv468189,nsv468460,nsv468416,nsv468409,nsv467959,nsv468402,nsv468219,nsv468425,nsv467906,nsv468184,nsv468335,nsv468269,nsv468518,nsv468163,nsv468196,nsv467980,nsv468504,nsv468463,nsv468120,nsv468067,nsv468242,nsv468050,nsv468342,nsv468124,nsv468011,nsv468179,nsv468482,nsv468130,nsv468046,nsv468542,nsv468209,nsv468111,nsv468139,nsv468434,nsv468436,nsv468470,nsv468454,nsv468452,nsv468325,nsv468315,nsv468126,nsv468206,nsv468207,nsv468290,nsv467981,nsv467951,nsv468313,nsv468503,nsv468224,nsv467903,nsv468512,nsv468442,nsv468397,nsv468475,nsv468433,nsv468023,nsv468064,nsv467948,nsv468132,nsv468320,nsv468211,nsv467910,nsv468522,nsv468346,nsv468513,nsv468025,nsv468220,nsv467932,nsv467982,nsv468033,nsv468104,nsv468359,nsv467964,nsv468489,nsv468097,nsv468286,nsv468031,nsv468266,nsv468370,nsv468284,nsv468381,nsv468158,nsv468068,nsv468128,nsv468365,nsv468295,nsv468043,nsv468312,nsv468367,nsv468218,nsv468082,nsv468254,nsv468217,nsv468291,nsv468400,nsv468248,nsv468468,nsv468384,nsv468021,nsv468004,nsv468319,nsv467997,nsv467942,nsv468545,nsv468088,nsv468204,nsv468131,nsv468162,nsv467914,nsv467962,nsv468334,nsv468145,nsv468302,nsv468089,nsv467941,nsv468134,nsv468304,nsv467966,nsv468188,nsv468357,nsv468107,nsv468041,nsv468410,nsv468090,nsv468464,nsv467913,nsv468314,nsv467971,nsv468471,nsv467915,nsv468246,nsv468165,nsv468533,nsv468374,nsv468480,nsv468548,nsv468391,nsv468136,nsv468278,nsv467998,nsv468281,nsv467926,nsv468051,nsv468169,nsv468087,nsv468265,nsv468333,nsv468378,nsv468330,nsv468485,nsv468015,nsv468363,nsv468392,nsv468223,nsv468203,nsv468377,nsv468279,nsv468465,nsv468496,nsv468069,nsv468185,nsv468326,nsv468508,nsv468293,nsv468297,nsv468150,nsv467993,nsv468056,nsv468221,nsv468495,nsv468270,nsv467919,nsv468245,nsv468299,nsv468458,nsv468457,nsv468362,nsv468459,nsv468121,nsv468259,nsv468501,nsv468123,nsv467934,nsv468001,nsv468053,nsv468182,nsv468385,nsv468373,nsv467925,nsv468146,nsv468161,nsv468019,nsv468541,nsv468101,nsv467952,nsv468303,nsv467924,nsv468228,nsv468086,nsv468383,nsv468537,nsv468091,nsv468285,nsv468154,nsv468473,nsv467992,nsv468232,nsv468010,nsv468122,nsv468096,nsv468201,nsv468014,nsv468085,nsv468040,nsv468466,nsv468491,nsv467963,nsv468446,nsv468180,nsv468003,nsv467911,nsv467928,nsv467968,nsv468405,nsv468444,nsv468403,nsv468250,nsv467937,nsv468035,nsv468440,nsv468045,nsv468075,nsv468012,nsv467974,nsv468422,nsv468190,nsv468287,nsv468415,nsv468443,nsv467909,nsv467933,nsv467902,nsv468199,nsv467908,nsv468328,nsv468477,nsv468526,nsv468551,nsv468022,nsv468071,nsv468493,nsv468311,nsv468448,nsv468215,nsv468026,nsv468057,nsv468521,nsv468230,nsv468222,nsv468261,nsv468164,nsv468174,nsv468509,nsv467965,nsv468135,nsv468140,nsv467979,nsv468487,nsv468449,nsv468095,nsv468225,nsv468530,nsv467991,nsv468013,nsv468151,nsv467920,nsv468431,nsv467985,nsv468141,nsv467995,nsv468336,nsv468109,nsv467917,nsv468412,nsv468236,nsv468181,nsv468469,nsv468536,nsv468114,nsv467996,nsv468322,nsv468066,nsv468429,nsv468175,nsv468345,nsv467947,nsv468208,nsv468532,nsv467954,nsv468054,nsv467943,nsv468142,nsv467957,nsv468484,nsv468108,nsv467945,nsv468467,nsv468079,nsv468092,nsv468380,nsv468498,nsv468497,nsv468399,nsv468534,nsv468355,nsv468264,nsv468296,nsv468237,nsv468424,nsv468414,nsv468543,nsv468331,nsv468229,nsv468166,nsv468253,nsv468524,nsv467921,nsv467929,nsv468020,nsv468289,nsv467973,nsv468511,nsv468353,nsv468411,nsv468390,nsv468476,nsv468039,nsv468540,nsv467987,nsv468369,nsv468481,nsv468321,nsv467953,nsv468231,nsv467912,nsv468500,nsv468176,nsv468277,nsv467946,nsv468418,nsv468076,nsv468490,nsv468529,nsv468074,nsv468479 M 1557 0 548 "" 1780846005_A,1780854016_A,1780854017_A,1780854100_A,1780854130_A,1780854158_A,1780854176_A,1780854198_A,1780854210_A,1780854216_A,1780854219_A,1780854302_A,1780854318_A,1780854334_A,1780854336_A,1780854341_A,1780854382_A,1780854392_A,1780854436_A,1780854439_A,1780854444_A,1780854445_A,1780854446_A,1780854462_A,1780854463_A,1780854484_A,1780854485_A,1780854496_A,1780854511_A,1780854533_A,1780854537_A,1780854558_A,1780854567_A,1780854568_A,1780854574_A,1780854592_A,1780862001_A,1780862014_A,1780862020_A,1780862021_A,1780862041_A,1780862043_A,1780862075_A,1780862078_A,1780862080_A,1780862084_A,1780862094_A,1780862100_A,1780862101_A,1780862109_A,1780862125_A,1780862156_A,1780862160_A,1780862161_A,1780862162_A,1780862180_A,1780862229_A,1780862252_A,1780862261_A,1780862274_A,1780862294_A,1780862299_A,1780862300_A,1780862301_A,1780862304_A,1780862334_A,1780862379_A,1780862381_A,1780862388_A,1780862392_A,1780862393_A,1780862394_A,1780862401_A,1780862403_A,1780862404_A,1780862415_A,1780862419_A,1780862424_A,1780862432_A,1780862435_A,1780862437_A,1780862443_A,1780862448_A,1780862461_A,1780862466_A,1780862530_A,1780862539_A,1780862540_A,1780862551_A,1780862554_A,1780862559_A,1780862563_A,1780862565_A,1780862574_A,1780862576_A,1780862584_A,1780862592_A,1780862596_A,1780862597_A,1780862599_A,1782681024_A,1782681080_A,1782681099_A,1782681102_A,1782681109_A,1782681110_A,1782681116_A,1782681144_A,1782681210_A,1782681219_A,1782681263_A,1782681287_A,1782681294_A,1782681317_A,1782681378_A,1782681495_A,1787431166_A,1787431197_A,1798860047_A,1798860049_A,1798860072_A,1798860166_A,1798860251_A,1798860306_A,1798860336_A,1798860552_A,1798860592_A,HGDP00001,HGDP00011,HGDP00013,HGDP00015,HGDP00017,HGDP00019,HGDP00023,HGDP00033,HGDP00035,HGDP00037,HGDP00041,HGDP00047,HGDP00049,HGDP00052,HGDP00054,HGDP00057,HGDP00058,HGDP00060,HGDP00064,HGDP00066,HGDP00080,HGDP00082,HGDP00086,HGDP00088,HGDP00090,HGDP00102,HGDP00105,HGDP00110,HGDP00112,HGDP00118,HGDP00120,HGDP00121,HGDP00124,HGDP00129,HGDP00130,HGDP00131,HGDP00133,HGDP00134,HGDP00135,HGDP00136,HGDP00140,HGDP00141,HGDP00143,HGDP00146,HGDP00150,HGDP00153,HGDP00154,HGDP00155,HGDP00157,HGDP00158,HGDP00160,HGDP00161,HGDP00171,HGDP00183,HGDP00185,HGDP00187,HGDP00189,HGDP00191,HGDP00195,HGDP00197,HGDP00210,HGDP00226,HGDP00237,HGDP00239,HGDP00244,HGDP00258,HGDP00262,HGDP00277,HGDP00279,HGDP00286,HGDP00288,HGDP00290,HGDP00298,HGDP00309,HGDP00315,HGDP00319,HGDP00333,HGDP00336,HGDP00351,HGDP00356,HGDP00359,HGDP00388,HGDP00402,HGDP00423,HGDP00428,HGDP00438,HGDP00445,HGDP00479,HGDP00491,HGDP00515,HGDP00522,HGDP00525,HGDP00526,HGDP00529,HGDP00537,HGDP00541,HGDP00543,HGDP00544,HGDP00548,HGDP00551,HGDP00552,HGDP00553,HGDP00554,HGDP00556,HGDP00558,HGDP00563,HGDP00564,HGDP00567,HGDP00568,HGDP00572,HGDP00574,HGDP00576,HGDP00579,HGDP00583,HGDP00587,HGDP00591,HGDP00594,HGDP00598,HGDP00600,HGDP00604,HGDP00610,HGDP00613,HGDP00615,HGDP00616,HGDP00620,HGDP00621,HGDP00622,HGDP00623,HGDP00624,HGDP00625,HGDP00627,HGDP00629,HGDP00631,HGDP00637,HGDP00642,HGDP00643,HGDP00647,HGDP00654,HGDP00655,HGDP00656,HGDP00662,HGDP00663,HGDP00664,HGDP00672,HGDP00674,HGDP00676,HGDP00679,HGDP00683,HGDP00685,HGDP00694,HGDP00696,HGDP00697,HGDP00699,HGDP00702,HGDP00710,HGDP00711,HGDP00716,HGDP00717,HGDP00720,HGDP00722,HGDP00724,HGDP00725,HGDP00730,HGDP00732,HGDP00741,HGDP00745,HGDP00747,HGDP00748,HGDP00749,HGDP00755,HGDP00756,HGDP00758,HGDP00760,HGDP00761,HGDP00762,HGDP00764,HGDP00766,HGDP00772,HGDP00775,HGDP00778,HGDP00779,HGDP00780,HGDP00781,HGDP00785,HGDP00787,HGDP00790,HGDP00797,HGDP00802,HGDP00806,HGDP00807,HGDP00813,HGDP00814,HGDP00818,HGDP00819,HGDP00820,HGDP00821,HGDP00828,HGDP00837,HGDP00838,HGDP00843,HGDP00845,HGDP00846,HGDP00849,HGDP00852,HGDP00855,HGDP00856,HGDP00857,HGDP00859,HGDP00860,HGDP00861,HGDP00862,HGDP00863,HGDP00864,HGDP00865,HGDP00869,HGDP00872,HGDP00876,HGDP00877,HGDP00882,HGDP00884,HGDP00886,HGDP00889,HGDP00890,HGDP00891,HGDP00898,HGDP00900,HGDP00908,HGDP00909,HGDP00927,HGDP00928,HGDP00930,HGDP00935,HGDP00938,HGDP00952,HGDP00956,HGDP00958,HGDP00959,HGDP00961,HGDP00964,HGDP00969,HGDP00971,HGDP00972,HGDP00973,HGDP00995,HGDP00998,HGDP00999,HGDP01010,HGDP01012,HGDP01027,HGDP01037,HGDP01041,HGDP01043,HGDP01044,HGDP01047,HGDP01050,HGDP01053,HGDP01056,HGDP01057,HGDP01058,HGDP01059,HGDP01063,HGDP01067,HGDP01069,HGDP01071,HGDP01072,HGDP01073,HGDP01076,HGDP01077,HGDP01078,HGDP01096,HGDP01097,HGDP01099,HGDP01100,HGDP01101,HGDP01147,HGDP01164,HGDP01173,HGDP01174,HGDP01177,HGDP01179,HGDP01180,HGDP01184,HGDP01191,HGDP01194,HGDP01195,HGDP01198,HGDP01200,HGDP01201,HGDP01203,HGDP01204,HGDP01205,HGDP01208,HGDP01209,HGDP01213,HGDP01217,HGDP01221,HGDP01226,HGDP01228,HGDP01231,HGDP01234,HGDP01238,HGDP01244,HGDP01245,HGDP01247,HGDP01253,HGDP01258,HGDP01259,HGDP01261,HGDP01262,HGDP01263,HGDP01266,HGDP01267,HGDP01268,HGDP01269,HGDP01271,HGDP01274,HGDP01275,HGDP01282,HGDP01287,HGDP01288,HGDP01289,HGDP01294,HGDP01298,HGDP01302,HGDP01305,HGDP01306,HGDP01307,HGDP01308,HGDP01309,HGDP01312,HGDP01317,HGDP01318,HGDP01319,HGDP01320,HGDP01321,HGDP01322,HGDP01327,HGDP01328,HGDP01331,HGDP01338,HGDP01345,HGDP01347,HGDP01348,HGDP01350,HGDP01351,HGDP01352,HGDP01358,HGDP01359,HGDP01362,HGDP01363,HGDP01366,HGDP01370,HGDP01374,HGDP01376,HGDP01377,HGDP01384,HGDP01385,HGDP01387,HGDP01388,HGDP01400,HGDP01402,NINDS_100,NINDS_101,NINDS_102,NINDS_103,NINDS_105,NINDS_109,NINDS_114,NINDS_115,NINDS_116,NINDS_119,NINDS_124,NINDS_129,NINDS_131,NINDS_134,NINDS_149,NINDS_155,NINDS_160,NINDS_162,NINDS_163,NINDS_17,NINDS_171,NINDS_179,NINDS_192,NINDS_193,NINDS_196,NINDS_203,NINDS_206,NINDS_207,NINDS_211,NINDS_22,NINDS_221,NINDS_222,NINDS_230,NINDS_231,NINDS_232,NINDS_241,NINDS_244,NINDS_246,NINDS_253,NINDS_257,NINDS_259,NINDS_272,NINDS_29,NINDS_3,NINDS_31,NINDS_39,NINDS_4,NINDS_42,NINDS_45,NINDS_65,NINDS_71,NINDS_74,NINDS_76,NINDS_80,NINDS_81,NINDS_87,NINDS_89,NINDS_9,NINDS_97,NINDS_99 dgv146n27 11 55116789 55246953 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv468555,nsv467900 M 1557 2 0 "" HGDP01003,HGDP01296 nsv508632 11 55118150 55204268 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619926 S 4 0 1 "" NA15510 nsv8827 11 55123742 55225164 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23725,nssv19876,nssv20118,nssv20013,nssv20275,nssv20447,nssv20134,nssv19836,nssv18352,nssv23667,nssv19736,nssv20145,nssv25286,nssv22632,nssv18281,nssv18040,nssv18395 M 31 1 16 Samples from several populations that are part of the HapMap project. "" NA07048,NA10839,NA10847,NA10863,NA12802,NA12872,NA18502,NA18537,NA18552,NA18563,NA18564,NA18860,NA18942,NA18980,NA19007,NA19221 esv33874 11 55123743 55209569 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101506,essv98913,essv97550,essv101212,essv93834,essv100872,essv96772,essv101037,essv98214,essv94817,essv94131,essv101307,essv94328,essv97026,essv97824,essv95685,essv95446,essv93073,essv95393,essv97371,essv101731,essv95791,essv94507,essv99107,essv92886,essv92746,essv93766,essv96192,essv96738,essv97178,essv98606,essv100056,essv95978,essv93484,essv93356,essv99653,essv95020,essv92571,essv98114,essv96516,essv99331,essv97685,essv100178,essv100612,essv100450,essv99445,essv98409,essv96416,essv94293 M 51 49 0 "" 21603,21606,21616,21618,21634,21656,21659,21693,21772,21791,21802,21805,21808,21817,21837,21841,21847,21863,21872,21879,21909,21911,21932,21938,21939,21944,21972,22007,22011,22075,22085,22086,22127,22128,22170,22217,22231,22233,22259,22261,22275,22278,22286,22298,22300,22335,22352,22371,22394 dgv6n14 11 55124465 55209499 CNV Loss Cooper et al 2008 18776910 SNP_array nsv433267,nsv433516,nsv433268,nsv433517,nsv433266 M 9 0 5 "" NA12878,NA15510,NA18555,NA18956,NA19129 dgv147n27 11 55127597 55174758 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv468556,nsv467901 M 1557 0 2 "" 1780854257_A,1780854557_A dgv9n64 11 55127597 55174758 CNV Gain+Loss Wang_et_al_2007 17921354 SNP_array nsv818826,nsv818825 M 112 4 5 "" NA10863,NA12234,NA12264,NA12740,NA12750,NA12751,NA18529,NA19138,NA19139 nsv818827 11 55127597 55179162 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418095,nssv1418096,nssv1416181 M 112 3 0 "" NA10859,NA11882,NA12892 dgv10n64 11 55127597 55198944 CNV Loss Wang_et_al_2007 17921354 SNP_array nsv818831,nsv818828 M 112 0 3 "" NA18550,NA18978,NA18992 dgv11n64 11 55127597 55204003 CNV Gain+Loss Wang_et_al_2007 17921354 SNP_array nsv818829,nsv818830 M 112 13 32 "" NA06985,NA06991,NA06994,NA07000,NA07345,NA07348,NA07357,NA10835,NA10847,NA10857,NA10860,NA10861,NA11881,NA11992,NA11993,NA12043,NA12044,NA12239,NA12248,NA12249,NA12865,NA12874,NA12875,NA12878,NA12891,NA18537,NA18547,NA18577,NA18609,NA18855,NA18856,NA18857,NA18949,NA18952,NA18965,NA18968,NA18987,NA18999,NA19137,NA19140,NA19141,NA19142,NA19143,NA19145,NA19193 nsv438185 11 55128383 55130279 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470333,nssv470334,nssv470331,nssv470332 M 269 0 4 Samples from several populations that are part of the HapMap project. "" NA11832,NA12003,NA12763,NA12864 dgv380e1 11 55130549 55176235 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1667,essv1566,essv4935,essv627,essv2769,essv7514,essv18508,essv6099,essv749,essv3509,essv18464,essv8580,essv19340,essv1976,essv18797,essv25052,essv22264,essv13114,essv14806,essv19804,essv4215,essv21492,essv714,essv3681,essv18017,essv21652,essv4321,essv5956,essv505,essv3434,essv5842,essv1699,essv1797,essv24942 M 271 0 0 "" NA06985,NA11832,NA11992,NA12003,NA12248,NA12707,NA12761,NA12763,NA12801,NA12864,NA12878,NA18524,NA18532,NA18537,NA18564,NA18573,NA18577,NA18609,NA18859,NA18870,NA18940,NA18942,NA18943,NA18952,NA18956,NA18968,NA18971,NA18992,NA18997,NA18998,NA18999,NA19000,NA19003,NA19130 dgv381e1 11 55130549 55230803 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv21616,essv19294,essv6082,essv25123,essv9516,essv7495,essv2933,essv17870,essv20752,essv14672,essv19861,essv5990,essv5852,essv1301,essv12941,essv2157,essv9961,essv946,essv4509,essv19064,essv12034,essv13276,essv5650,essv21899,essv7248,essv16607,essv25189,essv9493,essv22733,essv20686,essv19887,essv11474,essv23726,essv19048,essv19468,essv25098,essv8661,essv6438,essv9559,essv11600,essv24363,essv3919,essv20526,essv24442,essv20493,essv21882,essv7666,essv23111,essv23284,essv977,essv2747,essv7454,essv3944,essv23157 M 271 0 0 "" NA06991,NA07022,NA07034,NA07348,NA07357,NA10831,NA10838,NA10839,NA10856,NA10857,NA11830,NA11840,NA11881,NA12006,NA12043,NA12234,NA12239,NA12716,NA12750,NA12802,NA12813,NA12814,NA12865,NA12874,NA18521,NA18526,NA18552,NA18555,NA18561,NA18582,NA18592,NA18621,NA18623,NA18632,NA18635,NA18856,NA18861,NA18949,NA18960,NA18964,NA18965,NA18970,NA18978,NA18980,NA19007,NA19101,NA19102,NA19116,NA19145,NA19154,NA19201,NA19204,NA19207,NA19208 dgv382e1 11 55130549 55377275 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv7908,essv10596,essv8500,essv7928 M 271 0 0 "" NA18854,NA19209,NA19211,NA19239 nsv442617 11 55130608 55209585 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv50e55 11 55133582 55377275 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv34793,esv34637 M 771 0 2 "" NA19093,NA19211 dgv13n68 11 55139256 55350949 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH nsv832157,nsv832156 M 95 0 9 "" dgv148n27 11 55139733 55204003 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv468559,nsv468558,nsv468557 M 1557 0 3 "" 1780862081_A,HGDP00976,NINDS_197 nsv471363 11 55162410 55163347 CNV Deletion Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548074 S 3 "" dgv149n27 11 55165240 55204003 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv468562,nsv468560 M 1557 0 2 "" 1780854159_A,1780862416_A nsv468563 11 55174758 55193702 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543680 S 1557 0 1 "" 1780862311_A nsv471364 11 55174956 55175891 CNV Complex Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548076,nssv548075 M 3 "" dgv12n64 11 55179162 55352889 CNV Loss Wang_et_al_2007 17921354 SNP_array nsv818832,nsv818834 M 112 0 5 "" NA18852,NA18854,NA19093,NA19094,NA19239 nsv7218 11 55189531 55251899 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10819 S 9 0 0 "" NA18956 dgv383e1 11 55201444 55394688 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv8625,essv8406,essv15227,essv12923,essv13066,essv9300,essv13886,essv14649,essv10941,essv11189 M 271 0 0 "" NA18852,NA18854,NA19093,NA19094,NA19209,NA19211,NA19239 dgv51e55 11 55201870 55377275 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv34561,esv34760,esv34812,esv35012,esv35147 M 771 0 5 "" NA18852,NA18854,NA19094,NA19209,NA19239 nsv469885 11 55202869 55375199 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649906 M 265 0 4 Samples from several populations that are part of the HapMap project. "" dgv150n27 11 55204003 55352889 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv468564,nsv468565 M 1557 0 2 "" HGDP00926,HGDP00940 nsv442618 11 55217259 55303668 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv468566 11 55260197 55310673 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543683 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01418 nsv832158 11 55306736 55457885 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449202,nssv1449201 M 95 2 0 "" nsv39282 11 55347300 55357168 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57860 M 24 "" nsv8828 11 55348047 55350970 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22897,nssv19224 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18517,NA18975 nsv8829 11 55431954 55434989 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19254,nssv23163 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18972,NA18975 nsv437718 11 55436559 55585332 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467599 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18863 nsv468568 11 55439371 55576120 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543684 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00941 nsv517590 11 55442132 55593196 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv668199,nssv690811,nssv662190,nssv666867,nssv702049,nssv654399,nssv652451,nssv659264 M 2026 0 8 "" dgv52e55 11 55442375 55599088 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv34592,esv34825 M 771 0 2 "" NA18862,NA18863 dgv151n27 11 55443304 55465391 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv468570,nsv468569 M 1557 0 2 "" HGDP01285,NINDS_159 dgv384e1 11 55446439 55605732 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1008,essv14040,essv11294 M 271 0 0 "" NA18862,NA18863 nsv468571 11 55460342 55465391 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543687 S 1557 0 1 "" NINDS_125 dgv152n27 11 55461398 55486327 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv468574,nsv468573 M 1557 0 2 "" 1780854261_A,1782681076_A nsv521440 11 55520519 55809097 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698050 S 2026 0 1 "" nsv832160 11 55536761 55673374 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449203 S 95 1 0 "" nsv468575 11 55604521 55694530 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543690 S 1557 0 1 "" 1780862176_A nsv519283 11 55718817 55732908 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv680302,nssv682976,nssv655205,nssv687169 M 2026 0 4 "" nsv832161 11 55802749 55923540 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449204 S 95 1 0 "" nsv324 11 55875518 55912931 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9822,nssv10820,nssv3951,nssv2866,nssv5357,nssv6459 M 9 6 0 "" NA12156,NA12878,NA18507,NA18555,NA18956,NA19129 nsv511006 11 55879336 55911867 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621569 S 4 0 0 "" NA15510 nsv510256 11 55888632 55894632 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622034,nssv623933 M 4 0 2 "" NA10860,NA18994 nsv516558 11 56071873 56104212 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv681187,nssv669146,nssv656350,nssv692325,nssv686831,nssv659706,nssv661669,nssv659769,nssv685866,nssv673021 M 2026 0 10 "" dgv69n21 11 56081152 56123253 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv525637,nsv523453 M 2026 0 2 "" nsv516710 11 56123253 56123460 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv670304,nssv686775,nssv680316,nssv678935,nssv662265,nssv684856,nssv686288 M 2026 0 7 "" nsv509410 11 56195385 56248531 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619346,nssv623411,nssv620782 M 4 3 0 "" NA10860,NA15510,NA18994 nsv325 11 56206265 56232995 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1009,nssv9944,nssv10821,nssv9270,nssv5359,nssv10894,nssv6460,nssv3952 M 9 8 0 "" NA12156,NA12878,NA15510,NA18507,NA18517,NA18956,NA19129,NA19240 nsv468577 11 56260304 56460618 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543691 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00862 nsv519069 11 56347126 56349021 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696541 S 2026 0 1 "" nsv8830 11 56381278 56384481 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20369,nssv19796 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA19007,NA19173 nsv520375 11 56426406 56460618 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv675144,nssv700910,nssv663334 M 2026 0 3 "" nsv832162 11 56473234 56658104 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449205 S 95 0 1 "" nsv832163 11 57055930 57237626 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449207,nssv1449208,nssv1449209 M 95 3 0 "" nsv832164 11 57164193 57335401 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449210 S 95 0 1 "" nsv508633 11 57176161 57316621 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622485,nssv622483 M 4 0 1 "" NA18994 nsv326 11 57255129 57272935 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1010 S 9 1 0 "" NA19240 nsv327 11 57289217 57307322 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8914 S 9 0 1 "" NA12156 nsv442231 11 57401386 57405822 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv517822 11 57485569 57507577 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695227 S 2026 0 1 "" nsv328 11 57501324 57546516 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1011,nssv8915 M 9 0 2 "" NA12156,NA19240 nsv832165 11 57562600 57765652 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449211 S 95 1 0 "" nsv38691 11 57577681 57577681 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57269 M 24 "" nsv523101 11 57600082 57628442 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698794 S 2026 1 0 "" nsv442232 11 57608407 57612191 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv832166 11 57608607 57762765 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449213,nssv1449212 M 95 1 1 "" nsv832167 11 57669085 57705326 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449215,nssv1449216,nssv1449214 M 95 2 1 "" nsv522219 11 57869527 57871560 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694996 S 2026 0 1 "" nsv517849 11 57885629 58020757 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695254 S 2026 1 0 "" nsv38576 11 57977183 57977510 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57154 M 24 "" nsv528190 11 58093196 58104341 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704747 S 2026 0 1 "" nsv832168 11 58150636 58321227 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449218,nssv1449219 M 95 2 0 "" dgv70n21 11 58160409 58161309 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv528261,nsv527919 M 2026 0 2 "" nsv329 11 58207620 58234866 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4626 S 9 0 1 "" NA19129 nsv516321 11 58215812 58216649 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv659326,nssv669494,nssv686156,nssv667560,nssv685724,nssv661010,nssv659847,nssv658871,nssv673777,nssv687488,nssv675627 M 2026 0 11 "" nsv507592 11 58235117 58241117 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620236,nssv622896,nssv617814 M 4 3 0 "" CHM,NA15510,NA18994 nsv330 11 58247221 58280094 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3955 S 9 1 0 "" NA12878 dgv71n21 11 58310347 58388944 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv523481,nsv525355 M 2026 0 2 "" nsv508634 11 58380664 58413958 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622494 S 4 0 1 "" NA18994 nsv524785 11 58384410 58388944 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700777 S 2026 0 1 "" nsv528475 11 58388944 58413384 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705078 S 2026 0 1 "" dgv385e1 11 58456668 58635415 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv8424,essv2527,essv9867,essv12563,essv7214,essv13655,essv24802,essv9182,essv11208,essv7101,essv17034,essv10489,essv14279,essv4091,essv4440,essv16364,essv6643,essv1786,essv87,essv1159,essv8178 M 271 0 0 "" NA10860,NA18515,NA18516,NA18537,NA18547,NA18552,NA18621,NA18635,NA18951,NA18991,NA18997,NA19003,NA19098,NA19119,NA19128,NA19144,NA19145,NA19193,NA19194,NA19204,NA19206 dgv386e1 11 58456668 58765249 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv5413,esv712,essv2022 M 271 0 0 "" NA18563,NA18949 dgv14n68 11 58456673 58635415 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH nsv832171,nsv832169 M 95 3 0 "" nsv469559 11 58487361 58644215 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649671 M 265 0 0 Samples from several populations that are part of the HapMap project. "" nsv471671 11 58487362 58644215 CNV Gain Sharp et al 2005 15918152 BAC_aCGH,FISH Eichler Segmental Duplication BAC array nssv549243,nssv549244,nssv549242 M 48 3 0 "" NA10979,NA11776,NA17016 nsv510257 11 58496954 58502954 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622041,nssv623957,nssv618344,nssv621225 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 dgv387e1 11 58502814 58662594 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv15943,essv10176,essv3653,essv7240,essv940,essv2430 M 271 0 0 "" NA18515,NA18516,NA18635,NA18949,NA18951,NA18991 essv6513 11 58535219 58610745 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18572 nsv468578 11 58547204 58658339 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543692 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00601 dgv388e1 11 58558019 58653725 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv14833,essv5991,essv6205 M 271 0 0 "" NA18552,NA18563,NA19119 nsv8831 11 58561003 58611547 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20175,nssv20148,nssv18379,nssv19906,nssv21178,nssv20477 M 31 6 0 Samples from several populations that are part of the HapMap project. "" NA18537,NA18552,NA18563,NA18564,NA18572,NA19144 dgv389e1 11 58567817 58610745 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1583,essv1666,essv7621,essv8997,essv1702 M 271 0 0 "" NA18547,NA18968,NA18992,NA18997,NA19194 nsv442619 11 58567820 58610341 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" esv33906 11 58569589 58609793 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv95928 S 51 1 0 "" 22127 nsv818835 11 58588932 58590478 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418186,nssv1418187 M 112 2 0 "" NA19144,NA19145 nsv517454 11 58588932 58603752 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv665489,nssv657197,nssv684391,nssv671116,nssv670905,nssv676711,nssv652061,nssv685753,nssv682796,nssv652956,nssv691511,nssv652620,nssv690772 M 2026 2 11 "" nsv818836 11 58588932 58603752 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416478,nssv1416477,nssv1418493,nssv1417398,nssv1417658,nssv1415858,nssv1417134,nssv1418494,nssv1415857,nssv1417347,nssv1417417 M 112 11 0 "" NA10860,NA11992,NA18515,NA18516,NA18537,NA18609,NA18949,NA18951,NA18992,NA19193,NA19194 nsv331 11 58611387 58643800 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10822 S 9 1 0 "" NA18956 nsv510258 11 58766214 58772214 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618345,nssv622046 M 4 0 2 "" CHM,NA10860 nsv332 11 58784895 58816692 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1012 S 9 1 0 "" NA19240 nsv507593 11 58805181 58811181 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620244,nssv617815,nssv619044,nssv622906 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv832172 11 59152983 59187691 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449226,nssv1449223,nssv1449224,nssv1449227,nssv1449230,nssv1449229,nssv1449231,nssv1449233,nssv1449234,nssv1449235,nssv1449225,nssv1449232 M 95 0 12 "" nsv39597 11 59155379 59155705 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv58175 M 24 "" nsv517878 11 59197847 59237545 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695285 S 2026 0 1 "" nsv442233 11 59371967 59382587 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv334 11 59420376 59465680 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8916 S 9 0 1 "" NA12156 nsv335 11 59443865 59478518 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2868 S 9 1 0 "" NA18555 nsv832173 11 59545460 59697136 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449236 S 95 1 0 "" nsv509411 11 59566638 59598633 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620789 S 4 1 0 "" NA15510 nsv336 11 59570222 59599391 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3956 S 9 1 0 "" NA12878 nsv468579 11 59570863 59731976 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543693 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00685 esv33843 11 59664707 59701910 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100608 S 51 0 1 "" 22298 nsv832174 11 59665843 59830484 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449237 S 95 1 0 "" nsv524137 11 59693555 59703828 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700015 S 2026 0 1 "" nsv38947 11 59943027 59943084 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57525 M 24 "" nsv508635 11 59946434 60011682 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622503 S 4 0 1 "" NA18994 nsv471730 11 59984753 59985971 CNV Loss Hinds et al 2006 16327809 Oligo_aCGH,PCR Custom Perlegen arrays nssv646011 M 0.104 95 "" nsv525616 11 59996299 59996348 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701761 S 2026 0 1 "" nsv337 11 60011169 60043466 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6461 S 9 1 0 "" NA12156 nsv832175 11 60103197 60273115 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449238 S 95 1 0 "" nsv39214 11 60514857 60514857 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57792 M 24 "" nsv468580 11 60520408 60569033 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543694 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00774 nsv507594 11 60554441 60560441 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620253 S 4 1 0 "" NA15510 nsv832176 11 60573488 60758518 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449248,nssv1449256,nssv1449245,nssv1449240,nssv1449247,nssv1449243,nssv1449246,nssv1449242,nssv1449244,nssv1449251,nssv1449249,nssv1449254,nssv1449252,nssv1449255,nssv1449253,nssv1449257,nssv1449258,nssv1449241 M 95 1 17 "" nsv509412 11 60601218 60694656 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619372 S 4 1 0 "" NA10860 nsv526162 11 60614607 60635238 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702421 S 2026 0 1 "" nsv39073 11 60625221 60625343 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57651 M 24 "" dgv390e1 11 60671936 60837233 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv3198,essv8159,essv4799,essv1874,essv10465,essv292,essv11273,essv8433,essv3061,essv17549,essv9739,essv817,essv24284,essv530,essv8765,essv3463,essv3855,essv8233,essv1276,essv18065,essv1740,essv22304,essv2439,essv6321,essv5110,essv897,essv3310,essv5525,essv1396,essv7418,essv22049,essv2802,essv6124,essv4248,essv5910,essv15200,essv5277,essv7109,essv1482,essv4855,essv7762,essv2501,essv12238,essv156,essv21451,essv13179,essv7180,essv13694,essv15112,essv20323,essv13599,essv4448,essv661,essv16407,essv4905,essv15715,essv10051,essv21668,essv13805,essv12287,essv12848,essv9047,essv22427,essv14176,essv16639,essv18403,essv7849,essv7326,essv5053,essv2866,essv16953,essv4122,essv22529,essv24392,essv19593,essv8291,essv21061,essv10213,essv21816,essv22937,essv14440,essv4678,essv11685,essv22897,essv24770,essv6904,essv6387,essv3149,essv5335,essv7041,essv17746,essv4416,essv10560,essv16345,essv22472,essv2599,essv4080,essv19248,essv14363,essv10900,essv6275,essv4955,essv19444,essv6030,esv346,essv13095,essv13414,essv9902,essv10085,essv2269,essv5496,essv23386,essv10682,essv13518,essv6646,essv4645,essv11431,essv8346,essv12963,essv20232,essv3565,essv9134,essv12459,essv19085,essv21206,essv7269,essv21122,essv15377,essv15522,essv8617,essv9768,essv2342,essv14963,essv6587,essv7712,essv6807,essv16502,essv16814,essv19182,essv19653,essv21969,essv15710,essv23767,essv21389,essv18294,essv24870,essv5718,essv12758,essv17961,essv18751,essv14398,essv1596,essv23521,essv48,essv6951,essv1460,essv17253,essv3350,essv3710,essv259,essv24689,essv2039,essv1191,essv9248,essv478,essv12645,essv10414,essv1964,essv7598,essv2198,essv11943,essv1098,essv14620,essv12415,essv2678,essv11758,essv11139,essv14053,essv19791,essv3100,essv3968,essv366,essv14874 M 271 0 0 "" NA06985,NA06991,NA06993,NA07000,NA07055,NA07348,NA07357,NA10831,NA10835,NA10838,NA10846,NA10856,NA10860,NA10861,NA11829,NA11830,NA11839,NA11840,NA11995,NA12003,NA12144,NA12145,NA12154,NA12155,NA12236,NA12248,NA12249,NA12264,NA12707,NA12717,NA12740,NA12750,NA12760,NA12761,NA12762,NA12763,NA12815,NA12865,NA12874,NA18500,NA18502,NA18503,NA18504,NA18505,NA18507,NA18515,NA18516,NA18522,NA18529,NA18532,NA18537,NA18540,NA18542,NA18545,NA18547,NA18550,NA18552,NA18555,NA18558,NA18561,NA18563,NA18570,NA18571,NA18572,NA18573,NA18576,NA18577,NA18579,NA18582,NA18592,NA18593,NA18594,NA18603,NA18605,NA18608,NA18609,NA18612,NA18620,NA18621,NA18622,NA18623,NA18624,NA18632,NA18633,NA18635,NA18636,NA18637,NA18852,NA18855,NA18857,NA18858,NA18859,NA18860,NA18861,NA18862,NA18863,NA18870,NA18872,NA18912,NA18913,NA18914,NA18940,NA18942,NA18944,NA18945,NA18947,NA18948,NA18949,NA18951,NA18952,NA18953,NA18959,NA18960,NA18964,NA18965,NA18966,NA18967,NA18968,NA18969,NA18970,NA18971,NA18972,NA18973,NA18974,NA18975,NA18976,NA18978,NA18980,NA18981,NA18987,NA18990,NA18991,NA18992,NA18994,NA18995,NA18997,NA18998,NA18999,NA19000,NA19003,NA19007,NA19012,NA19092,NA19093,NA19094,NA19099,NA19101,NA19102,NA19103,NA19116,NA19119,NA19120,NA19127,NA19128,NA19129,NA19130,NA19131,NA19132,NA19138,NA19139,NA19140,NA19142,NA19144,NA19145,NA19152,NA19153,NA19154,NA19160,NA19192,NA19193,NA19194,NA19201,NA19204,NA19206,NA19207,NA19209,NA19210,NA19211,NA19222,NA19238,NA19239,NA19240 nsv8832 11 60684310 60694243 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22662 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18502 nsv832177 11 60709166 60880212 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449260,nssv1449270,nssv1449259,nssv1449269,nssv1449268,nssv1449264,nssv1449265,nssv1449263,nssv1449262,nssv1449267,nssv1449266,nssv1449271,nssv1449276,nssv1449273,nssv1449275,nssv1449274 M 95 0 16 "" nsv8833 11 60719249 60778145 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23191,nssv25311,nssv21208,nssv23752,nssv22303,nssv19284,nssv19966,nssv20619,nssv20178,nssv20507,nssv18382,nssv18409,nssv20305,nssv20205,nssv19826,nssv23025,nssv23219,nssv22691,nssv19936,nssv22351,nssv20888,nssv20887 M 31 20 0 Samples from several populations that are part of the HapMap project. "" NA11830,NA12155,NA12740,NA18502,NA18504,NA18537,NA18552,NA18563,NA18564,NA18572,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19144,NA19221,NA19240 nsv72 11 60726490 60730664 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv72 S 1 1 0 "" NA15510 nsv338 11 60726490 60735942 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1938,nssv9823,nssv10895 M 9 3 0 "" NA15510,NA18507,NA18555 nsv339 11 60728259 60776032 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3957,nssv6463,nssv10823,nssv5360 M 9 0 4 "" NA12156,NA12878,NA18956,NA19129 nsv509414 11 60748009 60748009 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620794 S 4 1 0 "" NA15510 nsv340 11 60754191 60756259 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1939 S 9 1 0 "" NA18555 nsv341 11 60764594 60783712 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1940 S 9 1 0 "" NA18555 nsv509415 11 60786520 60839258 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619373 S 4 1 0 "" NA10860 nsv8834 11 60806157 60820217 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22720,nssv19996 M 31 1 1 Samples from several populations that are part of the HapMap project. "" NA18502,NA18552 nsv507595 11 60893584 60899584 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619045,nssv622912,nssv620263 M 4 3 0 "" NA10860,NA15510,NA18994 nsv520751 11 60913632 60939964 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697589 S 2026 1 0 "" nsv832178 11 60926122 61097438 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449278,nssv1449277 M 95 1 1 "" nsv518592 11 61005959 61011591 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696039 S 2026 0 1 "" nsv818837 11 61005959 61022270 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417720 S 112 1 0 "" NA18999 nsv818838 11 61016327 61018093 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417557 S 112 0 1 "" NA18971 nsv468582 11 61016327 61127859 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543695 S 1557 0 1 "" NINDS_61 nsv342 11 61083960 61117683 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8917 S 9 1 0 "" NA12156 nsv832179 11 61129847 61281576 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449279 S 95 0 1 "" nsv528697 11 61214433 61443609 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705343 S 2026 0 1 "" nsv343 11 61294746 61326534 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5361 S 9 1 0 "" NA19129 nsv468585 11 61372588 61421568 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543697 S 1557 0 1 "" 1780854206_A dgv391e1 11 61505378 61650609 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1331,essv705 M 271 0 0 "" NA18940 esv2751033 11 61536598 61652300 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6984070,essv6984071 M 771 1 0 "" BEC_768 nsv7219 11 61582856 61665067 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1941,nssv9271 M 9 0 0 "" NA18517,NA18555 nsv39599 11 61646881 61646970 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv58177 M 24 "" esv32929 11 61775508 61775581 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv95711 S 51 1 0 "" 21841 esv33305 11 61779416 61833883 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100772 S 51 0 1 "" 21656 nsv516460 11 61861513 61910737 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv668534,nssv672300 M 2026 2 0 "" nsv468586 11 61896645 61939583 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543698 S 1557 0 1 "" NINDS_271 nsv832180 11 61958181 62121404 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449280 S 95 0 1 "" nsv345 11 61981827 62026830 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8918 S 9 0 1 "" NA12156 nsv346 11 62000242 62034168 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8919 S 9 1 0 "" NA12156 nsv832182 11 62052151 62219424 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449284,nssv1449282,nssv1449281 M 95 2 1 "" nsv347 11 62053644 62095503 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8920 S 9 0 1 "" NA12156 nsv348 11 62231026 62276288 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8921 S 9 0 1 "" NA12156 nsv508636 11 62303690 62401034 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619945 S 4 0 1 "" NA15510 nsv509416 11 62303690 62401034 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619376 S 4 1 0 "" NA10860 nsv523357 11 62557724 62595087 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699106 S 2026 0 1 "" nsv818839 11 62594645 62596243 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418495,nssv1416780,nssv1416781,nssv1418310,nssv1418496 M 112 0 5 "" NA19092,NA19160,NA19161,NA19193,NA19194 nsv517447 11 62594645 62604138 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv660971,nssv697497,nssv689935,nssv659707,nssv657270,nssv653207,nssv665796,nssv681389,nssv656387,nssv654312,nssv686098,nssv673778,nssv652043,nssv654464,nssv671286,nssv687861,nssv680502,nssv660323,nssv663235,nssv676210,nssv663465 M 2026 0 21 "" nsv468587 11 62604094 62648460 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543699 S 1557 0 1 "" NINDS_36 nsv522971 11 62605274 62629740 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698641 S 2026 0 1 "" esv33721 11 62688284 62688505 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100652 S 51 0 1 "" 21656 dgv392e1 11 62801568 62883430 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv5758,esv1369 M 271 0 0 "" NA18540 nsv507596 11 62810620 62816620 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622920,nssv619046,nssv620267 M 4 3 0 "" NA10860,NA15510,NA18994 nsv349 11 62936696 62949999 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10896 S 9 1 0 "" NA15510 nsv73 11 62936696 62949999 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv73 S 1 1 0 "" NA15510 nsv350 11 62950698 62970249 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6464 S 9 0 1 "" NA12156 nsv351 11 62953136 62974535 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1942 S 9 1 0 "" NA18555 nsv468588 11 62989939 63076815 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543700 S 1557 0 1 "" 1780854205_A nsv509417 11 63009691 63093791 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623421 S 4 1 0 "" NA18994 nsv352 11 63079884 63113698 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5362,nssv2869 M 9 2 0 "" NA18555,NA19129 esv33275 11 63125571 63127447 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100914 S 51 0 1 "" 21656 esv32927 11 63133853 63144499 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99889 S 51 1 0 "" 22086 nsv353 11 63167792 63185074 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8922 S 9 0 1 "" NA12156 nsv832183 11 63173254 63321141 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449285,nssv1449286 M 95 0 2 "" esv33170 11 63287171 63287925 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv94613 S 51 1 0 "" 21932 esv33730 11 63337776 63342661 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99946 S 51 1 0 "" 22086 dgv15n68 11 63544278 63720108 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH nsv832185,nsv832184 M 95 0 9 "" nsv354 11 63569027 63603532 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1014 S 9 1 0 "" NA19240 nsv356 11 63625423 63669705 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1943 S 9 0 1 "" NA18555 esv33971 11 63703200 63703275 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv94075,essv96895,essv94621,essv100206 M 51 0 4 "" 21802,21817,21932,22286 nsv832186 11 63728836 63926635 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449300,nssv1449299 M 95 0 2 "" esv33774 11 63734670 63735320 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93393 S 51 1 0 "" 22170 esv33033 11 63757130 63757826 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93767 S 51 0 1 "" 21972 nsv357 11 63808383 63832837 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8923 S 9 1 0 "" NA12156 nsv358 11 63849512 63883813 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3958,nssv10824 M 9 2 0 "" NA12878,NA18956 dgv13n64 11 63853809 63886298 CNV Loss Wang_et_al_2007 17921354 SNP_array nsv818841,nsv818840 M 112 0 2 "" NA18968,NA19003 nsv832187 11 63878545 64068876 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449301 S 95 0 1 "" esv2422214 11 64069067 64239994 CNV Deletion Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161405 S 181 0 1 "" ND04575 nsv832188 11 64071944 64241785 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449305,nssv1449306,nssv1449303,nssv1449302,nssv1449304 M 95 5 0 "" nsv818842 11 64102024 64302967 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415686 S 112 1 0 "" NA12248 nsv528506 11 64102024 64457606 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705113 S 2026 0 1 "" nsv359 11 64233584 64259449 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8925 S 9 0 1 "" NA12156 dgv153n27 11 64233626 64341535 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv468597,nsv468598 M 1557 0 2 "" 1780862093_A,1782681313_A nsv832189 11 64243759 64376775 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449310,nssv1449309,nssv1449308 M 95 0 3 "" dgv72n21 11 64302967 64341563 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv519478,nsv519117 M 2026 0 2 "" nsv39166 11 64379983 64380078 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57744 M 24 "" nsv360 11 64388971 64416212 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8926 S 9 0 1 "" NA12156 nsv526181 11 64394617 65013905 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702443 S 2026 1 0 "" esv32668 11 64499646 64514663 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93713,essv100287 M 51 2 0 "" 21972,22286 esv2750762 11 64515533 64517684 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93671 S 51 0 1 "" 21972 nsv509418 11 64688578 64726828 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619380 S 4 1 0 "" NA10860 nsv832190 11 64734720 64884189 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449311 S 95 0 1 "" esv2422285 11 64769870 65011116 CNV Deletion Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161335 S 181 0 1 "" ND04575 nsv482159 11 64878858 64881658 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558520 S 1 1 0 "" KB1 esv32703 11 64970436 64978602 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93324 S 51 1 0 "" 22170 nsv361 11 65044882 65058887 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3959 S 9 1 0 "" NA12878 nsv39227 11 65120899 65120977 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57805 M 24 "" dgv393e1 11 65316469 65478939 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv5312,esv270,essv22372 M 271 0 0 "" NA12875,NA18563 nsv832191 11 65388905 65562696 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449313,nssv1449312 M 95 0 2 "" nsv39194 11 65422106 65429033 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57772 M 24 "" nsv362 11 65683714 65705369 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1015 S 9 0 1 "" NA19240 nsv517090 11 65684349 65691765 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv693092,nssv661270,nssv674079,nssv687441,nssv669371,nssv683045,nssv662191,nssv653851,nssv666549,nssv661871,nssv673779,nssv689744,nssv684902,nssv684043,nssv666891,nssv680503,nssv656388,nssv676316,nssv653770,nssv679870 M 2026 0 20 "" nsv818843 11 65684349 65691765 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416663,nssv1416662 M 112 0 2 "" NA19116,NA19120 esv32849 11 65815610 65816862 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93706 S 51 1 0 "" 21972 nsv832193 11 65876915 66035381 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449314 S 95 0 1 "" nsv468601 11 65990599 66052690 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543704 S 1557 0 1 "" 1780862448_A nsv522277 11 65990599 66250401 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695058 S 2026 0 1 "" nsv363 11 66121953 66153157 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3960 S 9 1 0 "" NA12878 nsv518919 11 66165985 66225045 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696380 S 2026 0 1 "" nsv468602 11 66225045 66390973 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543705 S 1557 0 1 "" 1782681216_A nsv516087 11 66272625 66336148 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv680957,nssv663664,nssv666120,nssv676680,nssv682696,nssv688545,nssv667561 M 2026 7 0 "" nsv508638 11 66298229 66400210 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622517 S 4 0 1 "" NA18994 nsv364 11 66359769 66371914 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3961 S 9 1 0 "" NA12878 nsv832194 11 66391038 66562556 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449315,nssv1449316,nssv1449320,nssv1449319,nssv1449317 M 95 3 2 "" esv32822 11 66468753 66469671 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93837,essv95206,essv94374,essv97792,essv95507,essv93027,essv97391,essv101667,essv94513,essv92689,essv93727,essv96165,essv93450,essv93179,essv97721,essv100263,essv98376 M 51 11 6 "" 21634,21721,21808,21837,21847,21863,21879,21909,21932,21944,21972,22007,22128,22170,22278,22286,22352 nsv365 11 66609167 66635822 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6465 S 9 0 1 "" NA12156 nsv509419 11 66742434 66766224 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620800 S 4 1 0 "" NA15510 nsv468603 11 66789652 66921071 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543706 S 1557 0 1 "" 1798860210_A nsv367 11 66863079 66879107 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6466 S 9 1 0 "" NA12156 nsv7220 11 66878607 66909679 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6467 S 9 0 0 "" NA12156 nsv516453 11 66921071 66942576 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv676516,nssv682954,nssv669703,nssv668487 M 2026 0 4 "" nsv521723 11 66932268 67067834 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694483 S 2026 0 1 "" nsv524096 11 66942576 66981564 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699970 S 2026 0 1 "" nsv468604 11 66942576 67040467 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543707 S 1557 0 1 "" NINDS_173 nsv527056 11 66964002 67050884 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703432 S 2026 0 1 "" nsv528976 11 66981564 66983582 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705675 S 2026 0 1 "" esv2422195 11 66990898 67383477 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161376 S 181 1 0 "" ND01659 nsv368 11 67003889 67033913 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5364 S 9 1 0 "" NA19129 nsv468606 11 67109265 67573512 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543709 S 1557 1 0 "" NINDS_4 dgv154n27 11 67129053 67190445 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv468607,nsv468608 M 1557 0 2 "" 1780862003_A,1780862484_A nsv468609 11 67152290 67190445 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543712 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00688 dgv394e1 11 67229481 67647865 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv710,essv6671,essv19554,essv5774 M 271 0 0 "" NA12864,NA18540,NA18608 dgv395e1 11 67239060 67538145 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv6544,essv7059,essv6928,essv6442,essv4346,essv605,essv3266 M 271 0 0 "" NA18592,NA18608,NA18612,NA18622,NA18624,NA18947,NA18967 nsv818845 11 67258202 67430258 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417321,nssv1417248 M 112 0 2 "" NA18577,NA18608 nsv468610 11 67258202 67471604 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543713 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00697 dgv14n64 11 67258202 67505393 CNV Loss Wang_et_al_2007 17921354 SNP_array nsv818847,nsv818846 M 112 0 3 "" NA18609,NA18612,NA18987 nsv516191 11 67258202 67505393 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv693204,nssv656038,nssv666690,nssv705404,nssv703410,nssv676632,nssv662961 M 2026 3 4 "" nsv469719 11 67272762 67434857 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649740 M 265 0 3 Samples from several populations that are part of the HapMap project. "" nsv369 11 67325181 67339503 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10826 S 9 1 0 "" NA18956 nsv370 11 67347432 67380406 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1944,nssv5365 M 9 2 0 "" NA18555,NA19129 essv3003 11 67367400 67459594 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18981 nsv469856 11 67395613 67616066 CNV Gain Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649877 M 265 2 0 Samples from several populations that are part of the HapMap project. "" nsv442621 11 67396131 67419050 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv155n27 11 67416597 67471604 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv468611,nsv468612 M 1557 0 2 "" HGDP01189,HGDP01190 nsv8836 11 67509455 67576375 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25336 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19221 nsv482160 11 67515151 67528169 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558521 S 1 1 0 "" KB1 dgv156n27 11 67521632 67556502 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv468613,nsv468614 M 1557 0 2 "" 1780862226_A,HGDP00546 nsv468615 11 67521632 67573512 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543718 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01339 nsv371 11 67638549 67648069 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8927 S 9 0 1 "" NA12156 nsv38993 11 67896393 67896393 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57571 M 24 "" nsv509420 11 67914444 67986240 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623433 S 4 1 0 "" NA18994 nsv468618 11 67927589 67987816 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543720 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00546 dgv73n21 11 67955584 67973996 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv520841,nsv526402 M 2026 0 2 "" nsv832195 11 68042959 68231187 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449322,nssv1449321 M 95 0 2 "" nsv372 11 68067646 68096718 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6468 S 9 0 1 "" NA12156 nsv510259 11 68091241 68097241 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621255 S 4 0 1 "" NA15510 nsv509421 11 68094241 68200169 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623438,nssv620808 M 4 2 0 "" NA15510,NA18994 nsv509422 11 68258057 68319008 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623441 S 4 1 0 "" NA18994 nsv373 11 68334706 68360294 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8928 S 9 0 1 "" NA12156 nsv509423 11 68398039 68494630 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623446,nssv620811,nssv623444 M 4 2 0 "" NA15510,NA18994 nsv374 11 68400386 68421311 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10827,nssv3962 M 9 2 0 "" NA12878,NA18956 nsv38626 11 68480021 68480230 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57204 M 24 "" nsv520960 11 68514489 68515361 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694410 S 2026 0 1 "" nsv527120 11 68514489 68537646 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703503 S 2026 0 1 "" nsv832196 11 68519158 68689864 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449324,nssv1449323 M 95 0 2 "" nsv468619 11 68526609 68577452 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543721 S 1557 0 1 "" NINDS_54 nsv468620 11 68561382 68612171 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543722 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00336 nsv521595 11 68613492 68633163 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698212 S 2026 1 0 "" nsv509425 11 68616765 68740165 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620815 S 4 1 0 "" NA15510 nsv818848 11 68617234 68627577 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417747 S 112 0 1 "" NA19003 nsv375 11 68706481 68723072 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8929 S 9 1 0 "" NA12156 nsv376 11 68754003 68789107 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1016 S 9 1 0 "" NA19240 nsv508639 11 68883612 69060810 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622527 S 4 0 1 "" NA18994 nsv528007 11 68948792 68948922 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704533 S 2026 0 1 "" nsv818849 11 68984727 68987156 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417523 S 112 0 1 "" NA18968 nsv468622 11 69014341 69053658 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543723 S 1557 0 1 "" 1780862042_A nsv38869 11 69091329 69092922 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57447 M 24 "" dgv16n68 11 69117677 69297659 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH nsv832198,nsv832197 M 95 0 7 "" nsv468623 11 69123458 69144411 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543724 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01001 nsv523897 11 69127319 69139375 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699740 S 2026 0 1 "" nsv832199 11 69241915 69396984 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449333,nssv1449334 M 95 1 1 "" nsv832200 11 69241915 69396984 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449335 S 95 0 1 "" nsv508640 11 69297139 69361395 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622529 S 4 0 1 "" NA18994 nsv468624 11 69316688 69388070 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543725 S 1557 0 1 "" 1780862444_A nsv832201 11 69381495 69522942 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449336 S 95 0 1 "" nsv38996 11 69423524 69423589 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57574 M 24 "" nsv39653 11 69660204 69662138 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv58231 M 24 "" nsv39588 11 69664132 69669536 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv58166 M 24 "" nsv378 11 69731207 69784991 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9272 S 9 0 1 "" NA18517 dgv157n27 11 69749575 69771806 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv468626,nsv468629,nsv468630 M 1557 0 3 "" HGDP00017,HGDP00262,HGDP00520 nsv468627 11 69754186 69759313 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543727 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01378 nsv517181 11 69755529 69759313 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv686248,nssv670906,nssv652008,nssv677843,nssv664024,nssv655604,nssv678235,nssv699175,nssv652523,nssv683614,nssv653946,nssv684191,nssv686065,nssv661438 M 2026 0 14 "" nsv379 11 69869833 69916016 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1017,nssv8930,nssv3963,nssv1945,nssv5366 M 9 5 0 "" NA12156,NA12878,NA18555,NA19129,NA19240 nsv509426 11 69886518 69903502 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623453,nssv620820,nssv618087,nssv619382 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv524138 11 70129700 70141158 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700016 S 2026 0 1 "" nsv818850 11 70154458 70174289 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417748 S 112 0 1 "" NA19003 nsv509427 11 70275795 70358372 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619383 S 4 1 0 "" NA10860 nsv380 11 70279912 70313158 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8931 S 9 1 0 "" NA12156 nsv39143 11 70287862 70288000 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57721 M 24 "" nsv381 11 70374595 70408055 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8932 S 9 1 0 "" NA12156 nsv510582 11 70451029 70566349 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624299,nssv618669,nssv622366,nssv621580 M 4 0 0 "" CHM,NA10860,NA15510,NA18994 nsv38686 11 70475400 70475473 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57264 M 24 "" esv32673 11 70552731 70610298 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100897 S 51 1 0 "" 21656 nsv382 11 70728179 70752754 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1018 S 9 1 0 "" NA19240 nsv520291 11 70741167 70744872 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv662447,nssv680504 M 2026 0 2 "" dgv74n21 11 70746443 70893528 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv519224,nsv526973 M 2026 0 2 "" nsv832202 11 70752897 70809016 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449341,nssv1449339,nssv1449337,nssv1449338 M 95 0 4 "" nsv518163 11 70819998 70832801 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695584 S 2026 0 1 "" nsv507597 11 70928436 70934436 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622956 S 4 1 0 "" NA18994 nsv832205 11 71014348 71201465 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449342 S 95 1 0 "" dgv396e1 11 71041287 71335224 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv11169,esv137,essv19507,essv11918 M 271 0 0 "" NA12864,NA18502,NA19211 esv33330 11 71081959 71105199 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97508,essv100690,essv100967,essv95108,essv94077,essv101346,essv95454,essv101749,essv94518,essv99114,essv92881,essv96215,essv93512,essv93327,essv97696,essv100605 M 51 1 15 "" 21616,21656,21693,21721,21802,21805,21847,21909,21932,21938,21939,22007,22128,22170,22278,22298 nsv482161 11 71176205 71189928 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558522 S 1 1 0 "" KB1 nsv8837 11 71194988 71237563 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20026,nssv23247,nssv22779 M 31 1 2 Samples from several populations that are part of the HapMap project. "" NA18502,NA18552,NA18972 nsv509428 11 71263771 71325991 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623459 S 4 1 0 "" NA18994 nsv383 11 71287254 71304975 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1019 S 9 1 0 "" NA19240 esv32752 11 71373970 71374136 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98715 S 51 0 1 "" 21606 nsv384 11 71462930 71494868 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10828 S 9 1 0 "" NA18956 nsv39571 11 71522241 71522241 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv58149 M 24 "" nsv526086 11 71544815 71550425 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702330 S 2026 0 1 "" nsv385 11 71658963 71695604 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1020,nssv1946 M 9 2 0 "" NA18555,NA19240 nsv832206 11 71684221 71853665 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449343 S 95 1 0 "" nsv522492 11 71828476 71832177 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705860 S 2026 0 1 "" nsv832207 11 71950398 72146770 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449344 S 95 0 1 "" nsv468633 11 71959532 72014212 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543730 S 1557 0 1 "" NINDS_98 nsv523601 11 71959532 72108583 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699394 S 2026 0 1 "" nsv509429 11 71962613 71993207 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620824 S 4 1 0 "" NA15510 nsv468636 11 72083516 72109327 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543731 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01095 esv2422418 11 72324166 72485513 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161259 S 181 1 0 "" ND01840 nsv386 11 72526745 72571455 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8933 S 9 0 1 "" NA12156 nsv832208 11 72553832 72768651 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449345 S 95 1 0 "" nsv518659 11 72612267 72623668 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696109 S 2026 1 0 "" nsv387 11 72642382 72674160 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10829 S 9 1 0 "" NA18956 nsv520665 11 72676869 72739504 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697546 S 2026 0 1 "" nsv508641 11 72826929 72913176 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618758 S 4 0 1 "" NA10860 nsv520130 11 72861246 72901424 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv690125,nssv674898,nssv661065 M 2026 3 0 "" nsv389 11 72881847 72917171 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3964 S 9 1 0 "" NA12878 nsv38888 11 72900244 72900244 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57466 M 24 "" nsv525173 11 73034520 73042321 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701249 S 2026 0 1 "" nsv521125 11 73036884 73055790 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697803 S 2026 0 1 "" nsv528592 11 73038536 73042321 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705218 S 2026 0 1 "" nsv390 11 73065836 73110547 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8934 S 9 0 1 "" NA12156 nsv510260 11 73145202 73151202 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618346 S 4 0 1 "" CHM nsv509430 11 73183268 73249633 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619389 S 4 1 0 "" NA10860 nsv391 11 73186507 73221691 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1021 S 9 1 0 "" NA19240 nsv510946 11 73300187 73335362 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624302 S 4 0 0 "" NA18994 nsv520299 11 73361942 73372402 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv662587,nssv662745 M 2026 0 2 "" nsv525322 11 73405807 73406170 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701432 S 2026 1 0 "" nsv471781 11 73439092 73439701 CNV Loss Hinds et al 2006 16327809 Oligo_aCGH,PCR Custom Perlegen arrays nssv646062 M 0.064 95 "" dgv397e1 11 73520257 74235245 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv714,essv7444,essv6962 M 271 0 0 "" NA18582 nsv392 11 73524089 73557067 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3966 S 9 1 0 "" NA12878 esv34979 11 73556336 74211100 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6979615,essv6979616,essv6986907,essv6986908,essv6990387 M 771 1 0 "" NA18582 nsv522994 11 73584572 73594838 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698664 S 2026 0 1 "" nsv527942 11 73721356 73722624 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704450 S 2026 0 1 "" nsv524552 11 73757755 73770051 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700503 S 2026 0 1 "" nsv8838 11 73809699 73818947 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18412,nssv18311,nssv20208,nssv20043,nssv20649,nssv19866,nssv22808,nssv20917,nssv19856,nssv22926,nssv25361,nssv23275,nssv20235,nssv23053,nssv22381,nssv18130,nssv19314,nssv23779,nssv19112,nssv20335,nssv20918,nssv21238,nssv20164,nssv19970,nssv22333 M 31 0 25 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10863,NA11830,NA12155,NA12740,NA12802,NA12872,NA18502,NA18504,NA18517,NA18537,NA18564,NA18853,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19144,NA19221,NA19240 nsv393 11 73813510 73859065 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6469 S 9 0 1 "" NA12156 nsv832209 11 73833531 74006767 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449346 S 95 1 0 "" nsv509431 11 74023964 74124901 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623470 S 4 1 0 "" NA18994 nsv525311 11 74064089 74064448 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701418 S 2026 1 0 "" nsv38718 11 74182988 74184681 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57296 M 24 "" nsv8839 11 74209985 74211721 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22411 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19240 nsv8840 11 74231509 74236604 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22363 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18504 nsv832210 11 74240430 74409781 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449347,nssv1449348 M 95 1 1 "" nsv526053 11 74535084 74539193 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702290 S 2026 0 1 "" nsv832211 11 74623487 74783773 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449349,nssv1449350 M 95 0 2 "" nsv522447 11 74660587 74746415 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705806 S 2026 0 1 "" nsv468637 11 74747519 74753514 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543732 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00491 nsv516556 11 74749431 74758568 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv669132,nssv674926,nssv702360,nssv698102 M 2026 1 3 "" dgv398e1 11 74875928 74878739 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv3494,esv1132 M 271 0 0 "" NA18999 nsv525193 11 74953826 74964989 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701272 S 2026 0 1 "" nsv832212 11 75202641 75403271 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449352 S 95 1 0 "" nsv515973 11 75246915 75509963 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694527,nssv657132,nssv680167,nssv703792,nssv665555 M 2026 5 0 "" nsv394 11 75498195 75543425 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8935 S 9 0 1 "" NA12156 nsv515484 11 75531883 75540219 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv673866,nssv651663 M 2026 0 2 "" nsv395 11 75546346 75573013 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3967 S 9 1 0 "" NA12878 nsv518763 11 75552685 75568343 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696213 S 2026 0 1 "" nsv39715 11 75559533 75559533 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv58293 M 24 "" nsv522670 11 75562969 75574220 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv706075 S 2026 0 1 "" nsv523869 11 75645343 75645489 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699708 S 2026 0 1 "" nsv528902 11 75645343 75650726 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705586 S 2026 0 1 "" nsv524020 11 75711022 75725441 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699882 S 2026 0 1 "" nsv521451 11 75731175 75765492 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698062 S 2026 0 1 "" nsv442622 11 75820665 75825933 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv528623 11 75839037 75845867 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705253 S 2026 0 1 "" nsv509432 11 75961607 76040334 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623472 S 4 1 0 "" NA18994 nsv518717 11 75966585 75988624 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696168 S 2026 0 1 "" nsv527708 11 76037370 76041465 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704187 S 2026 1 0 "" nsv509433 11 76059466 76117062 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623475 S 4 1 0 "" NA18994 nsv39437 11 76065997 76074071 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv58015 M 24 "" nsv507598 11 76199270 76205270 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619048 S 4 1 0 "" NA10860 nsv518920 11 76250664 76315299 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696381 S 2026 0 1 "" nsv519309 11 76315001 76315299 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696783 S 2026 0 1 "" nsv519700 11 76315299 76387443 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv657654,nssv688546,nssv683071,nssv661595,nssv689966,nssv674899,nssv704507,nssv661250 M 2026 7 1 "" nsv396 11 76347764 76380393 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5367 S 9 0 1 "" NA19129 nsv507599 11 76405859 76411859 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619049,nssv622970 M 4 2 0 "" NA10860,NA18994 nsv397 11 76418150 76450224 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6470 S 9 1 0 "" NA12156 nsv509434 11 76503823 76620311 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619409 S 4 1 0 "" NA10860 nsv528593 11 76518357 76529687 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705219 S 2026 0 1 "" nsv39193 11 76918851 76918900 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57771 M 24 "" nsv468641 11 76978989 77097962 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543733 S 1557 1 0 "" 1780862469_A nsv398 11 77176648 77208876 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10830 S 9 1 0 "" NA18956 nsv507600 11 77183098 77189098 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620307 S 4 1 0 "" NA15510 nsv520740 11 77231286 77675584 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697584 S 2026 1 0 "" nsv524537 11 77260914 77270869 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700487 S 2026 0 1 "" nsv507601 11 77271640 77277640 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620311 S 4 1 0 "" NA15510 nsv8841 11 77318692 77370226 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19886,nssv22955,nssv21268,nssv22393 M 31 0 4 Samples from several populations that are part of the HapMap project. "" NA18504,NA18517,NA19007,NA19144 nsv400 11 77331715 77364774 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5368 S 9 1 0 "" NA19129 nsv526268 11 77366422 77376172 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702541 S 2026 1 0 "" nsv516638 11 77402322 77441437 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv669789,nssv670710 M 2026 0 2 "" nsv516503 11 77533825 77598578 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv669790,nssv699801,nssv674080,nssv683822,nssv668719 M 2026 0 5 "" nsv527066 11 77561503 77640781 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703445 S 2026 1 0 "" esv33345 11 77566356 77578836 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99908 S 51 1 0 "" 22086 nsv510261 11 77656392 77662392 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624005 S 4 0 1 "" NA18994 nsv516040 11 77847433 77848489 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv653947,nssv679269,nssv676980,nssv672043,nssv684638,nssv671143,nssv668535,nssv688571,nssv669372,nssv686925,nssv675540,nssv679018,nssv656389,nssv671765,nssv680035,nssv665408,nssv677808,nssv652219,nssv679109,nssv654220,nssv684297,nssv662010,nssv666411,nssv674711,nssv678863,nssv653696,nssv664774,nssv667743,nssv673780,nssv671413 M 2026 0 30 "" nsv468642 11 77928019 78039867 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543734 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00011 nsv468643 11 78018336 78059765 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543735 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01332 esv33883 11 78066412 78077527 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv94948 S 51 0 1 "" 22231 nsv525230 11 78119061 78140463 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701319 S 2026 0 1 "" nsv832213 11 78123405 78302333 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449353 S 95 1 0 "" nsv516542 11 78131293 78140463 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv681211,nssv691998,nssv669008 M 2026 0 3 "" nsv509436 11 78395603 78478965 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623481 S 4 1 0 "" NA18994 nsv507602 11 78426103 78432103 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619050 S 4 1 0 "" NA10860 nsv401 11 78448265 78481641 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8936 S 9 1 0 "" NA12156 nsv519911 11 78568853 78575110 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv659449,nssv689166 M 2026 0 2 "" nsv832214 11 78582182 78798846 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449354 S 95 1 0 "" nsv832216 11 78659942 78843378 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449355 S 95 1 0 "" nsv402 11 78961916 79006625 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8937 S 9 0 1 "" NA12156 nsv521386 11 79023510 79026494 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697996 S 2026 0 1 "" nsv38973 11 79153257 79158168 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57551 M 24 "" nsv403 11 79306395 79340167 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8938 S 9 1 0 "" NA12156 nsv404 11 79422823 79453409 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1947 S 9 1 0 "" NA18555 dgv399e1 11 79645152 79660988 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv10972,essv17221,essv13369 M 271 0 0 "" NA18857,NA19092,NA19159 dgv400e1 11 79645152 79693784 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv943,essv11462 M 271 0 0 "" NA18856 nsv516941 11 79650193 79667948 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv655785,nssv673078,nssv687170,nssv679639,nssv693659,nssv691897,nssv665356,nssv689303,nssv658816,nssv688218,nssv660824,nssv654438,nssv685687,nssv682740,nssv678722,nssv653852,nssv654313,nssv656538,nssv657155,nssv670227,nssv653328,nssv687001,nssv672301,nssv654721,nssv653478,nssv658206,nssv654465,nssv699789,nssv653209,nssv664449,nssv656696,nssv677521,nssv669959 M 2026 0 33 "" nsv442623 11 79650579 79659825 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv401e1 11 79650581 79660988 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv13353,essv12863 M 271 0 0 "" NA18500,NA18502 essv9578 11 79650581 79665876 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18501 nsv8842 11 79651987 79668072 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19344,nssv22837 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18502,NA18975 esv34207 11 79653765 79661000 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6988108,essv6979130 M 771 0 1 "" NA18500 nsv523898 11 79731102 79732182 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699741 S 2026 1 0 "" nsv405 11 79769563 79814331 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8939 S 9 0 1 "" NA12156 nsv507603 11 79798883 79804883 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617816,nssv620316,nssv622984 M 4 3 0 "" CHM,NA15510,NA18994 nsv468644 11 79806357 79853868 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543736 S 1557 1 0 "" 1782681278_A nsv406 11 79928615 79961831 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3968 S 9 1 0 "" NA12878 nsv526424 11 79933124 79960012 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702725 S 2026 0 1 "" nsv832217 11 79997894 80194218 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449356 S 95 1 0 "" nsv407 11 80018396 80052495 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1023 S 9 1 0 "" NA19240 nsv519003 11 80022121 80023860 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696472 S 2026 0 1 "" nsv408 11 80075336 80113138 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8940 S 9 0 1 "" NA12156 dgv402e1 11 80076875 80080035 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1329,essv16597 M 271 0 0 "" NA18860 nsv526924 11 80204073 80214984 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703288 S 2026 0 1 "" nsv442234 11 80550138 80556840 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv403e1 11 80553027 80556842 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1128,essv16565 M 271 0 0 "" NA19193 nsv818851 11 80553633 80570961 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418497 S 112 0 1 "" NA19193 nsv442235 11 80575854 80583265 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv522268 11 80580086 80582116 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695048 S 2026 1 0 "" nsv527578 11 80580086 81167347 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704039 S 2026 0 1 "" nsv468646 11 80626998 80669801 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543737 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01356 dgv158n27 11 80661868 80692622 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv468648,nsv468647 M 1557 0 2 "" HGDP00467,HGDP01090 nsv519460 11 80661868 80692622 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv685478,nssv659413,nssv676104,nssv675790,nssv657156,nssv674159,nssv656274,nssv678925,nssv686099 M 2026 0 9 "" dgv404e1 11 80665959 80695621 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv15913,essv7965,esv1388 M 271 0 0 "" NA19203,NA19205 nsv832218 11 80681937 80883273 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449357 S 95 1 0 "" nsv832219 11 80770275 80907293 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449358 S 95 1 0 "" nsv510262 11 80819781 80825781 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624014 S 4 0 1 "" NA18994 nsv38490 11 80825779 80825892 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57068 M 24 "" nsv468649 11 80827181 80870289 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543740 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01213 nsv38542 11 80843408 80852951 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57120 M 24 "" nsv510263 11 80984247 80990247 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622085,nssv621271,nssv618347,nssv624015 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv468651 11 80995594 81041583 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543742 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01029 essv7465 11 80996713 81126163 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18633 esv689 11 80996713 81508270 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent + Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 "" esv34835 11 81016689 81126163 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6989121,essv6988247,essv6979808,essv6979809,essv6988248 M 771 0 1 "" NA18633 nsv525371 11 81075126 81094768 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701492 S 2026 0 1 "" dgv405e1 11 81088432 81508270 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv22788,essv18528,essv17596,essv23810 M 271 0 0 "" NA12753,NA12763 nsv522551 11 81094768 81230803 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705932 S 2026 0 1 "" dgv53e55 11 81126163 81470451 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv34312,esv34646 M 771 0 2 "" NA12753,NA12763 nsv437132 11 81126528 81451497 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467013 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA12753 nsv8843 11 81148927 81152311 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22984,nssv20103,nssv23806,nssv22453 M 31 4 0 Samples from several populations that are part of the HapMap project. "" NA07048,NA18504,NA18517,NA18860 nsv519004 11 81152288 81157641 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696473 S 2026 0 1 "" dgv159n27 11 81159302 81164606 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv468652,nsv468653 M 1557 0 2 "" 1780854261_A,1780862432_A nsv8844 11 81166938 81170190 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23012 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18517 dgv160n27 11 81172140 81194909 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv468654,nsv468656,nsv468658,nsv468662,nsv468655 M 1557 0 5 "" 1782681080_A,HGDP00145,HGDP00563,NINDS_36,NINDS_91 dgv161n27 11 81174591 81201656 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv468659,nsv468754,nsv468657,nsv468749,nsv468753,nsv468660,nsv468758,nsv468752,nsv468755,nsv468751,nsv468756,nsv468757 M 1557 0 12 "" 1780854016_A,1780854017_A,1780854253_A,HGDP00078,HGDP00151,HGDP00567,HGDP00639,HGDP01169,HGDP01237,HGDP01329,HGDP01362,NINDS_101 essv18539 11 81175188 81194806 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA11993 dgv406e1 11 81175527 81208645 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv22718,essv2386,essv11399,essv23716,essv25150,essv3836,essv3930 M 271 0 0 "" NA11839,NA12239,NA12813,NA18953,NA18970,NA18976,NA19192 nsv8845 11 81178883 81203954 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20000,nssv18341,nssv19896,nssv18455,nssv19142 M 31 1 4 Samples from several populations that are part of the HapMap project. "" NA07029,NA10847,NA10863,NA12872,NA18853 dgv162n27 11 81181640 81191362 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv468664,nsv468663 M 1557 0 2 "" 1780854118_A,1780854159_A dgv163n27 11 81181640 81194909 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv468745,nsv468680,nsv468746,nsv468721,nsv468729,nsv468715,nsv468710,nsv468723,nsv468702,nsv468704,nsv468726,nsv468725,nsv468735,nsv468692,nsv468693,nsv468677,nsv468682,nsv468700,nsv468730,nsv468744,nsv468742,nsv468733,nsv468743,nsv468747,nsv468712,nsv468689,nsv468681,nsv468724,nsv468678,nsv468686,nsv468719,nsv468717,nsv468748,nsv468713,nsv468708,nsv468691,nsv468688,nsv468741,nsv468711,nsv468701,nsv468671,nsv468737,nsv468740,nsv468669,nsv468684,nsv468687,nsv468667,nsv468679,nsv468714,nsv468707,nsv468690,nsv468706,nsv468738,nsv468731,nsv468703,nsv468685,nsv468698,nsv468709,nsv468673,nsv468665,nsv468722,nsv468675,nsv468718,nsv468699,nsv468696,nsv468720,nsv468670,nsv468666,nsv468676,nsv468668,nsv468674,nsv468697,nsv468734,nsv468732,nsv468736,nsv468695 M 1557 0 76 "" 1780862391_A,HGDP00007,HGDP00013,HGDP00064,HGDP00092,HGDP00131,HGDP00140,HGDP00143,HGDP00148,HGDP00158,HGDP00175,HGDP00177,HGDP00185,HGDP00224,HGDP00234,HGDP00267,HGDP00302,HGDP00319,HGDP00323,HGDP00326,HGDP00356,HGDP00359,HGDP00372,HGDP00376,HGDP00402,HGDP00407,HGDP00491,HGDP00514,HGDP00531,HGDP00541,HGDP00548,HGDP00558,HGDP00575,HGDP00584,HGDP00607,HGDP00619,HGDP00622,HGDP00646,HGDP00656,HGDP00678,HGDP00679,HGDP00685,HGDP00686,HGDP00696,HGDP00735,HGDP00736,HGDP00806,HGDP00814,HGDP00881,HGDP00882,HGDP00949,HGDP00950,HGDP00956,HGDP00959,HGDP01065,HGDP01073,HGDP01075,HGDP01162,HGDP01168,HGDP01186,HGDP01256,HGDP01272,HGDP01277,HGDP01282,HGDP01331,HGDP01336,HGDP01339,HGDP01345,HGDP01358,HGDP01368,HGDP01372,HGDP01399,HGDP01401,HGDP01402,HGDP01414,NINDS_225 nsv515963 11 81181640 81194909 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv682697,nssv652379,nssv659492,nssv690883,nssv677588,nssv665704,nssv682638,nssv696228,nssv674300,nssv686415,nssv671979,nssv651667,nssv693006,nssv654047,nssv672013,nssv664562,nssv685554,nssv671766,nssv654772,nssv669863,nssv673107,nssv655707,nssv668504,nssv677957,nssv654562,nssv684347,nssv672129,nssv684589,nssv678529,nssv682763,nssv659112,nssv664403,nssv667855,nssv675106,nssv681459,nssv666850,nssv680932,nssv688857,nssv670994,nssv681274,nssv653298,nssv675495,nssv673079,nssv670932,nssv658346,nssv671414,nssv685998,nssv655442,nssv683913,nssv683333,nssv662728,nssv659555,nssv692421,nssv680011,nssv651843,nssv674654,nssv679773,nssv672389,nssv668536,nssv657985,nssv687839,nssv671465,nssv664001,nssv666203,nssv672698,nssv656773,nssv655465,nssv677372,nssv664775,nssv691667,nssv679841,nssv669355,nssv659737,nssv678663,nssv654466,nssv652302,nssv675207,nssv672944,nssv688000,nssv689233,nssv689328,nssv669032,nssv662694,nssv661251,nssv684192,nssv701985,nssv670197,nssv669669,nssv660648,nssv693757,nssv678550,nssv668075,nssv682106,nssv670730,nssv661220,nssv690032,nssv652353,nssv662638,nssv664683,nssv671697,nssv666667,nssv672521,nssv659032,nssv679253,nssv691325,nssv655356,nssv669791,nssv671888,nssv672367,nssv666509,nssv681640,nssv689167,nssv672856,nssv683638,nssv676571,nssv662678,nssv680958,nssv680875,nssv652576,nssv692889,nssv683973,nssv670064,nssv688219,nssv688291,nssv673648,nssv663794,nssv652504,nssv661828,nssv673045,nssv666610,nssv681439,nssv686975,nssv684161,nssv691898,nssv659682,nssv662266,nssv685224,nssv673138,nssv684486,nssv677844,nssv657869,nssv681479,nssv692202,nssv685754,nssv656048,nssv676044,nssv667869,nssv684731,nssv669960,nssv668806,nssv655206,nssv689482,nssv672490,nssv666028,nssv688714,nssv657947,nssv682863,nssv682622,nssv679165,nssv677185,nssv659142,nssv670775,nssv656301,nssv656245,nssv692370,nssv674584,nssv673943,nssv691570,nssv681762,nssv659100,nssv660194,nssv676792,nssv682568,nssv680372,nssv682255,nssv678747,nssv687318,nssv674700,nssv662878,nssv676292,nssv687981,nssv685530,nssv651928,nssv666071,nssv686563,nssv669060,nssv668240,nssv668919,nssv679060,nssv652998,nssv662844,nssv691057,nssv664890,nssv677890,nssv670583,nssv679187,nssv675854,nssv685976,nssv662485,nssv679970,nssv659708,nssv680993,nssv678590,nssv667542,nssv652524,nssv676804,nssv655987,nssv693528,nssv676408,nssv664606,nssv662400,nssv669829,nssv652621,nssv693184,nssv666388,nssv692623,nssv685396,nssv679556,nssv681797,nssv679752,nssv655663,nssv655897,nssv685330,nssv680665,nssv662978,nssv679292,nssv658911,nssv686909,nssv684667,nssv662710,nssv661897,nssv688326,nssv680237,nssv657528,nssv690723,nssv685772,nssv655059,nssv657931,nssv673333,nssv656743,nssv691248,nssv703641,nssv695411,nssv669621,nssv694008,nssv673022,nssv684857,nssv693626,nssv656158,nssv675985,nssv685575,nssv691305,nssv675384,nssv663753,nssv666148,nssv657913,nssv667058,nssv691202,nssv661138,nssv671013,nssv674046,nssv655625,nssv662746,nssv686893,nssv667376,nssv654841,nssv676544,nssv693828,nssv691154,nssv672654,nssv685688,nssv675867,nssv667022,nssv678045,nssv690977,nssv672103,nssv665556,nssv674141,nssv666492,nssv683429,nssv693774,nssv654688,nssv668125,nssv653567 M 2026 1 283 "" nsv818852 11 81181640 81194909 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416090,nssv1417455,nssv1417060,nssv1416664,nssv1416588,nssv1416928,nssv1418390,nssv1415859,nssv1417062,nssv1415780,nssv1418391,nssv1418498,nssv1418499,nssv1415860,nssv1417524,nssv1418389,nssv1417919,nssv1415687 M 112 0 18 "" NA06994,NA07029,NA10847,NA10860,NA11993,NA12043,NA12146,NA12239,NA12249,NA12813,NA12875,NA18853,NA18953,NA18968,NA19119,NA19172,NA19192,NA19194 dgv407e1 11 81181640 81202309 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv8590,essv947,essv18875,essv21082,essv1693 M 271 0 0 "" NA07029,NA10854,NA18968,NA18981,NA19130 esv33777 11 81183084 81192438 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv95447,essv95252,essv96589,essv93569,essv98039,essv97691,essv100257,essv100490 M 51 0 8 "" 21847,21872,22011,22128,22259,22278,22286,22298 nsv442236 11 81189919 81194913 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv468759 11 81201520 81284672 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543850 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00185 nsv519571 11 81203793 81205854 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696926 S 2026 0 1 "" nsv38847 11 81233820 81234186 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57425 M 24 "" nsv468760 11 81234419 81246574 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543851 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01043 nsv525372 11 81253579 81254419 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701493 S 2026 0 1 "" nsv468762 11 81253579 81275675 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543853 S 1557 0 1 "" 1798860071_A nsv507604 11 81280541 81286541 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620324,nssv622995 M 4 2 0 "" NA15510,NA18994 nsv8847 11 81353009 81357638 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23111 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19132 nsv8848 11 81427753 81432462 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18469 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18572 nsv409 11 81519610 81551863 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3969 S 9 0 1 "" NA12878 nsv471751 11 81809848 81810289 CNV Loss Hinds et al 2006 16327809 Oligo_aCGH,PCR Custom Perlegen arrays nssv646032 M 0.173 95 "" nsv412 11 81811688 81856330 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8941 S 9 0 1 "" NA12156 nsv832220 11 81814941 82003096 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449359 S 95 1 0 "" nsv832221 11 81890832 82085279 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449364,nssv1449363,nssv1449361,nssv1449360,nssv1449365,nssv1449368,nssv1449367,nssv1449366 M 95 8 0 "" nsv471752 11 81899451 81899585 CNV Loss Hinds et al 2006 16327809 Oligo_aCGH,PCR Custom Perlegen arrays nssv646033 M 0.338 95 "" esv33531 11 81909575 83194350 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv95646 S 51 0 1 "" 21841 nsv413 11 82120752 82156204 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3970 S 9 1 0 "" NA12878 nsv515868 11 82263004 82370170 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv663774,nssv665090 M 2026 2 0 "" nsv38781 11 82277696 82277813 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57359 M 24 "" nsv414 11 82454156 82486106 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1024 S 9 1 0 "" NA19240 nsv468763 11 82474071 82514027 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543854 S 1557 0 1 "" NINDS_236 nsv468764 11 82645611 82649745 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543855 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00052 nsv516859 11 83257555 83258281 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv654492,nssv654883 M 2026 0 2 "" nsv468765 11 83269232 83298588 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543856 S 1557 0 1 "" 1780854279_A nsv527778 11 83298435 83298588 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704269 S 2026 0 1 "" esv2751034 11 83479618 83517920 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6982218,essv6986108,essv6982217 M 771 1 0 "" BEC_404 nsv516717 11 83508907 83520146 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv659123,nssv655399,nssv684092,nssv671185,nssv670398 M 2026 5 0 "" nsv415 11 83602589 83647251 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8942 S 9 0 1 "" NA12156 nsv524869 11 83789032 83797668 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700874 S 2026 0 1 "" nsv507605 11 83796855 83802855 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622996 S 4 1 0 "" NA18994 nsv508642 11 83838434 83932755 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619964 S 4 0 1 "" NA15510 nsv519456 11 83876556 83932969 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696863 S 2026 0 1 "" nsv520103 11 83882153 83886264 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv672302,nssv660774 M 2026 0 2 "" nsv468766 11 83944833 84023477 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543857 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00530 nsv519411 11 84109695 84127155 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv672014,nssv656049,nssv680792,nssv673820 M 2026 0 4 "" nsv527928 11 84127155 84226195 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704435 S 2026 1 0 "" nsv468767 11 84214283 84249432 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543858 S 1557 0 1 "" 1798860102_A nsv8849 11 84214581 84249143 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18371 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA12872 nsv516146 11 84215556 84254292 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv670024,nssv674270,nssv682650,nssv693145,nssv666471 M 2026 0 5 "" dgv408e1 11 84234326 84271303 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1175,essv19318 M 271 0 0 "" NA12872 nsv510264 11 84311545 84317545 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622087 S 4 0 1 "" NA10860 dgv75n21 11 84402443 84572681 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv528491,nsv527535 M 2026 0 2 "" essv7704 11 84858128 85107139 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18633 esv678 11 84858128 85281636 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent + Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 "" nsv8850 11 84862397 84864590 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23139 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19132 nsv518780 11 84923420 84944441 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696234 S 2026 0 1 "" nsv416 11 84926365 84950487 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3971 S 9 1 0 "" NA12878 esv32962 11 84942421 84950332 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101353,essv95618,essv99155,essv97772 M 51 0 4 "" 21805,21841,22275,22278 nsv515581 11 84943969 84944441 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv692667,nssv686894,nssv663965,nssv679535,nssv660953,nssv656607,nssv686130,nssv685924,nssv685031,nssv686289,nssv677186,nssv683582 M 2026 0 12 "" essv22464 11 85020345 85281636 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12761 nsv468768 11 85072828 85114000 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543859 S 1557 0 1 "" 1780862596_A nsv832222 11 85083360 85281629 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449369 S 95 1 0 "" essv21657 11 85114516 85150995 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12761 nsv417 11 85137935 85169285 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5369 S 9 1 0 "" NA19129 nsv528829 11 85172917 85173940 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705503 S 2026 0 1 "" nsv518426 11 85220130 85220524 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695861 S 2026 0 1 "" nsv418 11 85287777 85321470 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5370 S 9 1 0 "" NA19129 dgv164n27 11 85365857 85435237 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv468770,nsv468771 M 1557 0 2 "" HGDP00517,NINDS_147 nsv832223 11 85522963 85693605 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449370 S 95 0 1 "" dgv409e1 11 85547592 85583161 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv24638,esv1122 M 271 0 0 "" NA10846 nsv8851 11 85566045 85577228 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20679 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA12740 nsv442624 11 85567306 85576469 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv517382 11 85568037 85572099 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv674047,nssv657576,nssv684093,nssv700134,nssv651862,nssv668126 M 2026 0 6 "" nsv818853 11 85568037 85572099 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415991,nssv1418081,nssv1415990,nssv1418092 M 112 0 4 "" NA06991,NA06993,NA12740,NA12751 nsv508643 11 85666225 85725367 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618772 S 4 0 1 "" NA10860 nsv519914 11 85688437 85691009 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697122 S 2026 0 1 "" nsv518588 11 85714603 85716734 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694251 S 2026 0 1 "" nsv510265 11 85841579 85847579 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621275 S 4 0 1 "" NA15510 nsv528182 11 85912252 85936654 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704734 S 2026 0 1 "" nsv522178 11 85960328 85963473 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694951 S 2026 0 1 "" nsv471753 11 85963510 85964435 CNV Loss Hinds et al 2006 16327809 Oligo_aCGH,PCR Custom Perlegen arrays nssv646034 M 0.469 95 "" nsv8852 11 85981147 85984436 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20056,nssv20948,nssv22866,nssv23167,nssv20265,nssv19374,nssv19916,nssv18499 M 31 0 8 Samples from several populations that are part of the HapMap project. "" NA12155,NA18502,NA18537,NA18552,NA18572,NA18975,NA19007,NA19132 nsv471754 11 85981805 85984268 CNV Loss Hinds et al 2006 16327809 Oligo_aCGH,PCR Custom Perlegen arrays nssv646035 M 1.063 95 "" nsv522823 11 85995167 85999224 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698472 S 2026 0 1 "" nsv520466 11 86022325 86024588 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697437 S 2026 0 1 "" nsv521505 11 86115763 86192720 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698122 S 2026 1 0 "" nsv468775 11 86131063 86158364 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543862 S 1557 0 1 "" 1780862469_A nsv523704 11 86186576 86206085 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699512 S 2026 0 1 "" nsv524804 11 86289944 86290230 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700796 S 2026 0 1 "" nsv419 11 86357621 86392521 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3972 S 9 1 0 "" NA12878 nsv468776 11 86466364 86504070 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543863 S 1557 0 1 "" NINDS_223 nsv420 11 86522976 86567759 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8943 S 9 0 1 "" NA12156 nsv518332 11 86566932 86568725 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695761 S 2026 0 1 "" nsv525787 11 86566932 86597826 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701965 S 2026 0 1 "" nsv528940 11 86568725 86570513 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705631 S 2026 0 1 "" nsv521810 11 86712344 86715328 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694580 S 2026 0 1 "" nsv421 11 86724749 86739737 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3973 S 9 1 0 "" NA12878 nsv832224 11 86839769 87033571 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449371 S 95 1 0 "" nsv423 11 86885371 86930263 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8944 S 9 0 1 "" NA12156 nsv471755 11 87111053 87112872 CNV Loss Hinds et al 2006 16327809 Oligo_aCGH,PCR Custom Perlegen arrays nssv646036 M 0.021 95 "" dgv410e1 11 87287865 87304787 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv7255,esv1242 M 271 0 0 "" NA18635 nsv424 11 87310077 87354860 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8945 S 9 0 1 "" NA12156 nsv517308 11 87356014 87356180 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv693849,nssv651668,nssv685032 M 2026 0 3 "" nsv39176 11 87425729 87425920 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57754 M 24 "" nsv527214 11 87500294 87512880 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703614 S 2026 0 1 "" nsv818854 11 87586739 87587799 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416479 S 112 1 0 "" NA18516 dgv76n21 11 87620047 87624748 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv526785,nsv518460 M 2026 0 2 "" dgv77n21 11 87826776 87838578 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv523026,nsv528117 M 2026 0 2 "" nsv507606 11 87890799 87896799 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620334 S 4 1 0 "" NA15510 nsv510266 11 87914019 87920019 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621281 S 4 0 1 "" NA15510 nsv425 11 87948177 87980011 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5371 S 9 1 0 "" NA19129 nsv526075 11 87965452 87977813 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702316 S 2026 0 1 "" nsv468780 11 87998871 88034912 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543864 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01355 nsv516008 11 88005956 88023261 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv665685,nssv669899,nssv656488,nssv668419,nssv683834,nssv659124,nssv682107,nssv660507,nssv670415 M 2026 0 9 "" esv2751036 11 88013717 88020266 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6985245,essv6985244 M 771 0 1 "" SPC_13 nsv38884 11 88038008 88041028 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57462 M 24 "" dgv411e1 11 88083993 88339832 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv15884,essv3060,essv11741,essv9089,essv22551,essv22167,essv8727,essv15199,essv15713,essv12306,essv24760,essv9253,essv13797,essv22243,essv4722,essv9376,essv4400,essv11643,essv142,essv9939,essv14364,essv3400,essv6246,essv20933,essv22896,essv13100,essv13873,essv23347,essv22652,essv19530,essv18278,essv11282,essv9677,essv18994,essv17526,esv290,essv5375,essv6609,essv3966 M 271 0 0 "" NA07348,NA10846,NA10857,NA10860,NA12005,NA12044,NA12750,NA12752,NA12760,NA12762,NA12801,NA12864,NA18504,NA18563,NA18573,NA18620,NA18621,NA18636,NA18852,NA18853,NA18854,NA18912,NA18913,NA18945,NA18968,NA18970,NA18981,NA19092,NA19094,NA19128,NA19132,NA19138,NA19145,NA19153,NA19154,NA19194,NA19204,NA19223 dgv78n21 11 88173062 88173280 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv527353,nsv518516 M 2026 2 0 "" essv12691 11 88202448 88339832 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18500 nsv8853 11 88254017 88304135 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22513,nssv18472,nssv23040,nssv18529,nssv20399,nssv22483,nssv19926,nssv20133,nssv19404,nssv21298,nssv20537,nssv20295,nssv20978,nssv18160,nssv20238,nssv18485,nssv19946,nssv19172,nssv23098,nssv23303,nssv20030,nssv20116,nssv22471 M 31 21 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10847,NA10863,NA12155,NA12802,NA18504,NA18517,NA18537,NA18552,NA18563,NA18564,NA18572,NA18853,NA18942,NA18972,NA18975,NA19007,NA19144,NA19173,NA19240 esv33207 11 88299467 88312253 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98615 S 51 1 0 "" 22085 esv33258 11 88313134 88315539 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv96801 S 51 0 1 "" 21659 esv32702 11 88314479 89105516 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98775,essv97488,essv94094,essv97035,essv99043,essv98653,essv98511 M 51 1 6 "" 21606,21616,21802,21817,21938,22085,22352 nsv522236 11 88441929 88496430 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695016 S 2026 0 1 "" nsv468781 11 88552339 88911434 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543865 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00664 nsv39232 11 88602380 88603985 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57810 M 24 "" dgv165n27 11 88660146 88739977 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv468784,nsv468782 M 1557 0 2 "" HGDP00043,HGDP00649 nsv468785 11 88869079 89106380 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543869 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00804 nsv527380 11 89044838 89079879 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703813 S 2026 0 1 "" dgv412e1 11 89082686 89569836 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv4388,esv687,essv4339 M 271 0 0 "" NA18573,NA18622 nsv518785 11 89105700 89106380 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696239 S 2026 0 1 "" nsv8854 11 89110649 89112736 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20325 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18537 nsv8855 11 89115895 89155290 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23359,nssv22895,nssv20709,nssv23195,nssv20355,nssv23331 M 31 0 5 Samples from several populations that are part of the HapMap project. "" NA12740,NA18502,NA18537,NA18972,NA19132 nsv508644 11 89132138 89185619 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622565 S 4 0 1 "" NA18994 nsv426 11 89162036 89196311 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1025 S 9 1 0 "" NA19240 nsv832225 11 89181351 89440838 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449372,nssv1449376,nssv1449374,nssv1449375 M 95 4 0 "" esv33414 11 89182847 89223857 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97564 S 51 0 1 "" 21616 nsv8856 11 89184243 89190407 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20146,nssv18515,nssv21328,nssv18502,nssv23223,nssv19956,nssv20268,nssv23126,nssv20567,nssv20163,nssv20769,nssv20459,nssv20194,nssv18559,nssv22501,nssv21008,nssv20060,nssv19464 M 31 18 0 Samples from several populations that are part of the HapMap project. "" NA07048,NA10839,NA10847,NA10863,NA12155,NA12740,NA18517,NA18552,NA18563,NA18564,NA18572,NA18853,NA18942,NA18975,NA19132,NA19144,NA19173,NA19240 nsv7222 11 89184594 89452604 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1026,nssv6473,nssv1948,nssv9273,nssv1949,nssv3976,nssv3975,nssv6472 M 9 0 0 "" NA12156,NA12878,NA18517,NA18555,NA19240 nsv469862 11 89207822 89372535 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649883 M 265 0 0 Samples from several populations that are part of the HapMap project. "" essv22404 11 89207823 89372535 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA10861 nsv8858 11 89214753 89375381 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20947,nssv21038,nssv23154,nssv23473,nssv18545,nssv22924,nssv20829,nssv18532,nssv20193,nssv19494,nssv20977,nssv23417,nssv18575,nssv20223,nssv19524,nssv20385,nssv23501,nssv20799,nssv18589,nssv23445,nssv19986,nssv18562,nssv20445,nssv23833,nssv20016 M 31 1 13 Samples from several populations that are part of the HapMap project. "" NA07048,NA10847,NA10863,NA11830,NA12155,NA12740,NA18502,NA18517,NA18537,NA18572,NA18860,NA18942,NA18972,NA18975 nsv508645 11 89231790 89292239 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618774 S 4 0 1 "" NA10860 nsv508646 11 89297864 89358350 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617389,nssv619973,nssv622571 M 4 0 3 "" CHM,NA15510,NA18994 nsv508647 11 89374265 89453460 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617390 S 4 0 1 "" CHM nsv8859 11 89427192 89482328 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23529,nssv23251,nssv20597,nssv20859,nssv20475,nssv18190 M 31 0 6 Samples from several populations that are part of the HapMap project. "" NA12740,NA12802,NA18537,NA18563,NA18972,NA19132 nsv468787 11 89541802 89593029 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543870 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01365 nsv427 11 89630599 89635319 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1950 S 9 1 0 "" NA18555 nsv519936 11 89634463 89637444 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv659556,nssv691249,nssv690884 M 2026 0 3 "" nsv818856 11 89657936 89689801 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417678 S 112 1 0 "" NA18994 nsv818857 11 89831556 89847652 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417920 S 112 1 0 "" NA18852 nsv468788 11 89831573 89874972 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543871 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00966 nsv428 11 89984971 90015007 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1027 S 9 1 0 "" NA19240 nsv510267 11 90047070 90053070 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618348 S 4 0 1 "" CHM nsv521151 11 90109466 90233847 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702178,nssv683100,nssv693510 M 2026 0 3 "" nsv442625 11 90207835 90210585 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv413e1 11 90247849 90559703 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv16196,esv330 M 271 0 0 "" NA19161 nsv38725 11 90298432 90299335 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57303 M 24 "" nsv429 11 90309378 90316877 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8946 S 9 0 1 "" NA12156 nsv468789 11 90329125 90403760 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543872 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00076 nsv507607 11 90350735 90356735 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619051,nssv617817,nssv620344,nssv623001 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv525587 11 90394576 90403760 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701726 S 2026 0 1 "" nsv520471 11 90395143 90403760 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697687,nssv671698,nssv672303 M 2026 2 1 "" dgv414e1 11 90424582 90559703 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv3309,essv22533,essv9621,essv15860,essv1833,essv22668,essv300,essv1494,essv10483,essv6633,essv19658,essv12470,essv11816,essv14896,essv18202,essv1032,essv1782,essv9123,essv2486,essv4581,essv22085,essv1186,essv3177,essv10228,essv23492,essv18386,essv11865,essv14608,essv15212,essv22525,essv22182,essv12255,essv18637,essv13163,essv8288,essv12418,essv24801,essv9993,essv5935,essv12847,essv17445,essv21394,essv13600,essv22949,essv15068,essv10111,essv15545,essv5470,essv23981,essv15678,essv24235,essv17543,essv14190,essv20393,essv10516,essv8829,essv11027,essv23225,essv10285,essv10786,essv8234,essv16729,essv24368,essv8758,essv2974,essv4446,essv22118,essv11456,essv23667,essv19603,essv17033,essv9204,essv248,essv18429,essv24069,essv13804,essv14265,essv11752,essv13664,essv14716,essv1342,essv3998,essv7835,essv12338,essv15364,essv9901,essv19419,essv4637,essv5256,essv23782,essv1223,essv6226,essv13420,essv9440,essv20960,essv13057,essv11669,essv9372,essv17668,essv23016,essv13893,essv16861,essv10642,essv23339,essv17305,essv16136,essv24591,essv8354,essv17809,essv19985,essv24984,essv20996,essv19938,essv15392,essv13027,essv14573,essv23888,essv22900,essv7717,essv5753,essv10429,essv18116,essv21130,essv3217,essv9766,essv21819,essv8464,essv17100,essv19567,essv22332,essv10883,essv8650,essv16776,essv8961,essv18828,essv23559,essv14416,essv7300,essv17169,essv24932,essv22772,essv15795,essv10950,essv23608,essv20336,essv1422,essv22398,essv21344,essv2183,essv6970,essv21284,essv5179,essv21440,essv12629,essv16085,essv16409,essv2630,essv19000,essv1971,essv21219,essv13544,essv11940,essv20593,essv1127,essv15515,essv17227,essv3536,essv2296,essv9055,essv12550,essv407,essv5140,essv11157,essv8155,essv20663,essv146,essv20130,essv23440,essv9729 M 271 0 0 "" NA06985,NA06991,NA06993,NA06994,NA07019,NA07029,NA07034,NA07048,NA07056,NA07345,NA07348,NA07357,NA10830,NA10831,NA10839,NA10854,NA10855,NA10856,NA10857,NA10859,NA10860,NA10863,NA11830,NA11831,NA11839,NA11840,NA11881,NA11882,NA11992,NA11993,NA12005,NA12006,NA12043,NA12044,NA12057,NA12154,NA12155,NA12234,NA12236,NA12249,NA12264,NA12707,NA12716,NA12717,NA12740,NA12750,NA12751,NA12752,NA12760,NA12762,NA12763,NA12801,NA12812,NA12813,NA12814,NA12815,NA12864,NA12875,NA12878,NA12892,NA18500,NA18501,NA18502,NA18503,NA18504,NA18505,NA18506,NA18508,NA18515,NA18516,NA18521,NA18522,NA18523,NA18524,NA18550,NA18552,NA18558,NA18564,NA18582,NA18592,NA18593,NA18594,NA18611,NA18621,NA18624,NA18632,NA18633,NA18636,NA18852,NA18853,NA18854,NA18855,NA18856,NA18857,NA18858,NA18859,NA18860,NA18862,NA18863,NA18871,NA18872,NA18912,NA18913,NA18944,NA18948,NA18951,NA18959,NA18960,NA18964,NA18965,NA18966,NA18967,NA18968,NA18970,NA18971,NA18972,NA18974,NA18976,NA18978,NA18980,NA18981,NA18995,NA18997,NA18999,NA19005,NA19007,NA19012,NA19092,NA19093,NA19094,NA19098,NA19099,NA19100,NA19101,NA19102,NA19103,NA19116,NA19119,NA19120,NA19127,NA19128,NA19129,NA19130,NA19131,NA19132,NA19137,NA19138,NA19139,NA19140,NA19141,NA19142,NA19143,NA19144,NA19145,NA19152,NA19153,NA19154,NA19159,NA19160,NA19171,NA19172,NA19192,NA19194,NA19200,NA19201,NA19202,NA19203,NA19205,NA19206,NA19207,NA19208,NA19209,NA19211,NA19221,NA19222,NA19223,NA19238,NA19239,NA19240 nsv8860 11 90450345 90452608 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23860 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18860 nsv510268 11 90496612 90502612 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621287,nssv624028,nssv618349,nssv622096 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv8861 11 90533689 90538364 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25386 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19221 nsv8862 11 90541777 90552972 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20889 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA12740 nsv442237 11 90545908 90552634 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv430 11 90589129 90620325 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3977 S 9 1 0 "" NA12878 dgv166n27 11 90595620 90638244 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv468791,nsv468790 M 1557 0 2 "" 1780854459_A,1780862310_A esv34891 11 90605700 90686800 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6988217,essv6979679,essv6979680 M 771 0 1 "" NA18605 nsv468792 11 90605720 90698546 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543875 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01182 dgv415e1 11 90605720 90702192 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv5669,esv1348 M 271 0 0 "" NA18605 nsv39438 11 90793253 90793555 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv58016 M 24 "" nsv832227 11 90894766 91041730 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449377 S 95 1 0 "" nsv832228 11 90963077 91143052 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449378 S 95 1 0 "" nsv526705 11 91455249 91466486 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703044 S 2026 0 1 "" dgv416e1 11 91456251 91464123 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv5656,esv1273 M 271 0 0 "" NA18526 nsv832229 11 91524084 91714472 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449382,nssv1449388,nssv1449381,nssv1449387,nssv1449383,nssv1449386,nssv1449385,nssv1449389,nssv1449380,nssv1449379 M 95 10 0 "" nsv832230 11 91592290 91751994 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449390 S 95 1 0 "" nsv39076 11 91602338 91605442 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57654 M 24 "" nsv510269 11 91669574 91675574 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622099 S 4 0 1 "" NA10860 nsv431 11 91676806 91711312 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5372,nssv8947,nssv1028 M 9 3 0 "" NA12156,NA19129,NA19240 nsv509437 11 91683109 91733234 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620858,nssv619424 M 4 2 0 "" NA10860,NA15510 nsv38845 11 91885646 91885949 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57423 M 24 "" nsv832231 11 91951621 92106438 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449391 S 95 1 0 "" nsv521791 11 91958746 91960478 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694561 S 2026 0 1 "" nsv432 11 92002665 92036447 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3978 S 9 1 0 "" NA12878 nsv434 11 92275040 92308347 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8948 S 9 1 0 "" NA12156 nsv442239 11 92344805 92346836 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv507608 11 92372556 92378556 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623010 S 4 1 0 "" NA18994 nsv526546 11 92381834 92490826 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702860 S 2026 1 0 "" nsv525304 11 92469552 92517181 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701410 S 2026 0 1 "" nsv435 11 92493414 92527541 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1951,nssv3979,nssv6474 M 9 0 3 "" NA12156,NA12878,NA18555 nsv510593 11 92504909 92521692 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618618 S 4 0 0 "" CHM nsv818858 11 92537990 92571877 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416263 S 112 0 1 "" NA12056 dgv417e1 11 92537990 92573785 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv18692,esv1386 M 271 0 0 "" NA12056 esv33564 11 92558248 92576193 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100391 S 51 0 1 "" 22300 nsv436 11 92606648 92625322 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10832 S 9 0 1 "" NA18956 nsv526846 11 92632247 92632522 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703204 S 2026 1 0 "" nsv516245 11 92665226 92668588 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv667023,nssv678664,nssv689089,nssv660775,nssv688953,nssv654773 M 2026 0 6 "" nsv437 11 92668933 92702501 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2870 S 9 1 0 "" NA18555 nsv438 11 92674059 92720161 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6475 S 9 0 1 "" NA12156 nsv468793 11 92707811 92769541 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543876 S 1557 0 1 "" 1780854255_A nsv507609 11 92733564 92739564 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619052 S 4 1 0 "" NA10860 nsv439 11 92775584 92811330 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1952,nssv5373,nssv6476,nssv1029 M 9 0 4 "" NA12156,NA18555,NA19129,NA19240 nsv508649 11 92780547 92820740 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619982,nssv617391,nssv618781,nssv622576 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 dgv79n21 11 92870785 92880495 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv516461,nsv522568 M 2026 0 6 "" nsv440 11 92985186 93017124 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1953 S 9 1 0 "" NA18555 nsv832232 11 93040962 93189086 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449392 S 95 1 0 "" nsv525639 11 93045711 93050801 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701793 S 2026 0 1 "" nsv527168 11 93049452 93050801 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703562 S 2026 0 1 "" nsv441 11 93054470 93089858 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1030 S 9 1 0 "" NA19240 nsv508650 11 93248658 93353224 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618782,nssv622579 M 4 0 2 "" NA10860,NA18994 nsv442 11 93304765 93357621 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9824,nssv1956,nssv8949 M 9 0 3 "" NA12156,NA18507,NA18555 dgv418e1 11 93315872 93337708 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv13211,essv6785,essv19157,essv19827 M 271 0 0 "" NA10847,NA12812,NA18594,NA19120 dgv419e1 11 93315872 93344108 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv11480,essv20499 M 271 0 0 "" NA12874,NA18856 dgv420e1 11 93315872 93354598 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv921,essv6472 M 271 0 0 "" NA18637 dgv421e1 11 93318584 93327428 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv14828,essv3672,essv12143 M 271 0 0 "" NA18505,NA18943,NA19119 dgv422e1 11 93318584 93330980 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv10715,essv8683,essv22723,essv15971,essv12012,essv25035,essv24450,essv23644,essv16173,essv9524,essv8008 M 271 0 0 "" NA07055,NA12239,NA12801,NA12865,NA18506,NA18508,NA18912,NA19141,NA19142,NA19221,NA19223 nsv8863 11 93323530 93329495 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25411,nssv18605 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA10847,NA19221 nsv8864 11 93334320 93342207 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20627,nssv21358,nssv20176,nssv18592 M 31 0 4 Samples from several populations that are part of the HapMap project. "" NA18552,NA18563,NA18942,NA19144 nsv442240 11 93337704 93341240 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv523082 11 93473871 93505795 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698773 S 2026 1 0 "" nsv508651 11 93473948 93520118 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622582 S 4 0 1 "" NA18994 nsv468795 11 93503969 93604565 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543877 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01254 nsv517664 11 93505795 93552684 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv689662,nssv652761,nssv673392,nssv664725,nssv655683,nssv680736,nssv693488,nssv660324,nssv689570,nssv676732,nssv671466,nssv690033,nssv690793,nssv700440 M 2026 0 14 "" nsv509438 11 93585429 93631225 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619443,nssv620863 M 4 2 0 "" NA10860,NA15510 nsv523083 11 93601769 93790438 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698774 S 2026 1 0 "" nsv832233 11 93621082 93798119 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449393 S 95 1 0 "" nsv38987 11 93731440 93731489 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57565 M 24 "" nsv443 11 93800642 93825519 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8950 S 9 1 0 "" NA12156 nsv519248 11 94004009 94006944 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696740 S 2026 0 1 "" nsv521986 11 94004009 94008853 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694753 S 2026 0 1 "" nsv832234 11 94101838 94267493 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449394 S 95 1 0 "" nsv445 11 94133193 94162925 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10833 S 9 1 0 "" NA18956 nsv509439 11 94321975 94332631 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619445 S 4 1 0 "" NA10860 nsv446 11 94333368 94378560 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8952 S 9 0 1 "" NA12156 nsv518887 11 94352493 94356646 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696346 S 2026 1 0 "" nsv447 11 94553858 94578432 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6477 S 9 0 1 "" NA12156 nsv39727 11 94694868 94694868 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv58305 M 24 "" nsv448 11 94803671 94823311 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3980 S 9 0 1 "" NA12878 nsv523727 11 94807509 94820327 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699543 S 2026 0 1 "" nsv508652 11 94807813 94830826 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618788,nssv617392 M 4 0 2 "" CHM,NA10860 nsv468796 11 94815941 94820327 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543878 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00991 nsv518672 11 94817553 94820327 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696122 S 2026 0 1 "" nsv449 11 94829347 94860370 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10834 S 9 1 0 "" NA18956 nsv450 11 95051778 95084417 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1032 S 9 1 0 "" NA19240 nsv521090 11 95081883 95112039 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697781 S 2026 1 0 "" nsv39590 11 95093287 95093287 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv58168 M 24 "" nsv832235 11 95126424 95307883 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449396 S 95 1 0 "" nsv517358 11 95324507 95347800 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv657655,nssv684094,nssv678467,nssv651810,nssv673501,nssv692867,nssv663721,nssv660988,nssv666295,nssv652235,nssv679892,nssv674846,nssv691219,nssv665836,nssv653238 M 2026 15 0 "" nsv468797 11 95324507 95351562 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543879 S 1557 0 1 "" NINDS_152 dgv34n17 11 95436697 95466766 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437720,nsv437719 M 60 0 2 "" NA18872,NA19142 esv2422272 11 95454157 95472813 CNV Deletion Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161411 S 181 0 1 "" ND01496 nsv39583 11 95494617 95494762 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv58161 M 24 "" dgv80n21 11 95572771 95579484 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv526286,nsv522278 M 2026 0 2 "" nsv468798 11 95592312 95617318 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543880 S 1557 0 1 "" NINDS_67 nsv516311 11 95619379 95620715 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv661011,nssv657656,nssv700335,nssv662243,nssv687956,nssv686080,nssv670995,nssv667493,nssv696118,nssv657804,nssv672437,nssv675496,nssv657036 M 2026 0 13 "" nsv39676 11 95641573 95643042 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv58254 M 24 "" nsv516287 11 95847907 95907171 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv667340,nssv655853,nssv675157,nssv687257,nssv671169 M 2026 0 5 "" nsv39134 11 95872781 95873092 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57712 M 24 "" nsv528072 11 96298989 96302097 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704608 S 2026 0 1 "" dgv423e1 11 96355736 96576298 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv8677,essv15711 M 271 0 0 "" NA18912 esv539 11 96355736 96698006 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent + Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 "" nsv525078 11 96472124 96550210 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701133 S 2026 0 1 "" esv35013 11 96479400 96549641 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6979991,essv6989136,essv6988286 M 771 0 1 "" NA18912 nsv468799 11 96500421 96550210 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543881 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00011 esv2751037 11 96511512 96631600 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6982087,essv6982086,essv6982085,essv6989569,essv6989568 M 771 0 1 "" BEC_519 essv23549 11 96530728 96698006 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA06993 nsv8865 11 96613051 96614890 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21098 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA12155 nsv451 11 96639751 96666511 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3981 S 9 1 0 "" NA12878 nsv821669 11 96765260 96946383 CNV Loss Sebat_et_al_2004 15273396 ROMA Custom Nimblegen photoprint 85000 probe ROMA oligo array nssv1421243 S 31 0 1 "" nsv832236 11 96920358 97103806 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449397 S 95 0 1 "" nsv468801 11 96944291 96986882 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543883 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01400 nsv832238 11 97008784 97168670 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449399,nssv1449398 M 95 2 0 "" nsv832239 11 97018574 97051350 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449400 S 95 0 1 "" nsv516151 11 97023895 97025197 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv665514,nssv674827,nssv693896,nssv676409,nssv690388,nssv671390,nssv684779,nssv660325,nssv665608,nssv680303,nssv671287,nssv685348,nssv652762,nssv686100,nssv681248,nssv690932,nssv675082,nssv675497,nssv663065,nssv660776,nssv664645,nssv652330,nssv677086,nssv662526,nssv688699,nssv665329,nssv672803,nssv655094,nssv661012,nssv671540,nssv653615,nssv654563,nssv686895,nssv680036,nssv684044,nssv665686,nssv677610,nssv692164,nssv672414,nssv667913,nssv687575 M 2026 0 41 "" nsv452 11 97055976 97057070 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3982 S 9 1 0 "" NA12878 nsv468803 11 97062996 97122773 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543884 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00716 dgv424e1 11 97120050 97249540 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv997,esv1079 M 271 0 0 "" NA18964 esv2751038 11 97211948 97283012 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6989190,essv6980653 M 771 0 1 "" BEC_101 nsv468804 11 97242217 97848847 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543885 S 1557 0 1 "" 1780862111_A dgv425e1 11 97309468 97384974 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1,esv1384 M 271 0 0 "" NA18945 esv34819 11 97323686 97379032 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6988300,essv6980043,essv6989142 M 771 0 1 "" NA18945 nsv468806 11 97328263 97338387 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543887 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01346 nsv526112 11 97338387 97380183 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702361 S 2026 0 1 "" nsv832240 11 97364165 97534210 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449425,nssv1449410,nssv1449417,nssv1449402,nssv1449416,nssv1449419,nssv1449424,nssv1449423,nssv1449420,nssv1449421,nssv1449431,nssv1449430,nssv1449426,nssv1449428,nssv1449427,nssv1449435,nssv1449432,nssv1449434,nssv1449437,nssv1449436,nssv1449401,nssv1449403,nssv1449415,nssv1449422,nssv1449405,nssv1449404,nssv1449409,nssv1449414,nssv1449408,nssv1449413,nssv1449412,nssv1449433,nssv1449411 M 95 1 32 "" nsv468808 11 97463167 97514897 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543888 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00782 nsv832241 11 97504973 97723820 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449438 S 95 0 1 "" nsv515533 11 97635266 97718006 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv679893,nssv668076,nssv663846 M 2026 3 0 "" nsv522057 11 97661928 97847676 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694828 S 2026 1 0 "" nsv468811 11 97787546 97825623 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543889 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00165 nsv510270 11 97808821 97814821 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621298,nssv624048,nssv618350,nssv622117 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv518605 11 97860221 97862870 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696051 S 2026 0 1 "" nsv468812 11 97962694 97986603 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543890 S 1557 0 1 "" 1780854293_A nsv468813 11 97986603 98028284 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543891 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01346 nsv453 11 98000196 98021926 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3983 S 9 1 0 "" NA12878 nsv522928 11 98051843 98071804 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698591 S 2026 0 1 "" nsv468814 11 98059142 98100845 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543892 S 1557 0 1 "" NINDS_183 nsv524110 11 98100276 98100845 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699988 S 2026 0 1 "" nsv468819 11 98178721 98211869 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543894 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00924 dgv426e1 11 98266953 98310378 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv18793,esv1412 M 271 0 0 "" NA12891 nsv832242 11 98269433 98463594 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449439 S 95 0 1 "" nsv818859 11 98271560 98312568 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416184 S 112 0 1 "" NA12891 esv35016 11 98274111 98310400 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6989065,essv6979089 M 771 0 1 "" NA12891 dgv167n27 11 98316369 98341301 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv468822,nsv468821 M 1557 0 2 "" HGDP00003,HGDP01414 nsv520928 11 98323965 98330947 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697693 S 2026 0 1 "" nsv468823 11 98438373 98539370 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543897 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00474 esv33558 11 98512312 98512400 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98856 S 51 1 0 "" 21606 esv32699 11 98515776 98519388 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100026 S 51 0 1 "" 22086 nsv525174 11 98526770 98530204 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701250 S 2026 0 1 "" nsv516785 11 98530204 98530405 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv686081,nssv653458 M 2026 0 2 "" nsv517422 11 98534439 98536566 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv664249,nssv651977,nssv671170 M 2026 0 3 "" nsv520993 11 98539071 98595718 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697726 S 2026 0 1 "" nsv524013 11 98546758 98549764 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699873 S 2026 0 1 "" nsv468824 11 98567845 98593257 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543898 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00169 dgv427e1 11 98575697 98717492 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv18995,esv849 M 271 0 0 "" NA12005 nsv8866 11 98617056 98625338 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22531 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19240 nsv521600 11 98665712 98689812 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698217 S 2026 1 0 "" dgv428e1 11 98674719 98707009 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv5971,essv1710 M 271 0 0 "" NA18552,NA18968 dgv429e1 11 98679357 98691890 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2924,essv19129 M 271 0 0 "" NA12044,NA19007 nsv519381 11 98689812 98706527 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696823 S 2026 0 1 "" dgv430e1 11 98690633 98707009 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv18475,essv23158 M 271 0 0 "" NA10831,NA11832 nsv526809 11 98773827 98775443 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703163 S 2026 1 0 "" nsv468828 11 98796904 98835621 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543899 S 1557 0 1 "" 1780854061_A nsv468829 11 98814218 98848394 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543900 S 1557 0 1 "" 1780854436_A nsv468830 11 98814218 98892027 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543901 S 1557 0 1 "" 1780862459_A nsv468831 11 98826953 98842199 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543902 S 1557 0 1 "" 1780854477_A nsv522201 11 98827908 98835621 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694974 S 2026 0 1 "" nsv526736 11 98834366 98835621 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703079 S 2026 0 1 "" nsv507610 11 98971907 98977907 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619054 S 4 1 0 "" NA10860 nsv526965 11 98992656 99002515 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703337 S 2026 1 0 "" nsv468832 11 98993821 99007288 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543903 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00781 nsv818860 11 98994224 98998635 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416480,nssv1416481 M 112 0 2 "" NA18515,NA18517 nsv468833 11 98994224 99002515 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543904 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01237 nsv468834 11 98995656 99005948 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543905 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01236 nsv525366 11 98995656 99010880 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701486 S 2026 0 1 "" dgv168n27 11 99029544 99071992 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv468836,nsv468837,nsv468835 M 1557 0 3 "" 1780862416_A,1780862587_A,1798860361_A nsv519340 11 99029544 99071992 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv658944,nssv655497,nssv671258,nssv677420 M 2026 0 4 "" nsv522053 11 99079081 99085406 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694823 S 2026 0 1 "" nsv520862 11 99083719 99085406 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697655 S 2026 0 1 "" nsv517898 11 99103335 99104665 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695307 S 2026 0 1 "" nsv454 11 99106885 99140039 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8953 S 9 1 0 "" NA12156 nsv468842 11 99134182 99156043 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543910 S 1557 0 1 "" 1780862310_A nsv468843 11 99150578 99197414 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543911 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00768 nsv528690 11 99154024 99160002 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705333 S 2026 0 1 "" nsv832243 11 99239748 99438250 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449441 S 95 1 0 "" nsv468844 11 99275428 99297546 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543912 S 1557 0 1 "" 1780862312_A dgv431e1 11 99309814 99358487 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv22685,esv1274 M 271 0 0 "" NA12004 essv19298 11 99324506 99357622 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA07022 essv12429 11 99348596 99358487 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19152 nsv526847 11 99393600 99404124 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703205 S 2026 1 0 "" nsv468845 11 99393600 99440848 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543913 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01262 nsv456 11 99432803 99465954 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1033 S 9 1 0 "" NA19240 nsv468846 11 99514208 99541501 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543914 S 1557 0 1 "" NINDS_103 nsv468847 11 99546630 99562746 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543915 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00112 nsv832244 11 99589039 99722240 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449442 S 95 0 1 "" nsv457 11 99623248 99653631 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1957 S 9 1 0 "" NA18555 nsv832245 11 99643858 99782039 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449443 S 95 1 0 "" nsv468848 11 99651302 99694892 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543916 S 1557 0 1 "" NINDS_125 nsv520995 11 99669167 100186421 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697727 S 2026 1 0 "" nsv522847 11 99678598 99678704 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698500 S 2026 1 0 "" nsv458 11 99804638 99849629 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8954 S 9 0 1 "" NA12156 nsv832246 11 99931935 100112167 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449444 S 95 1 0 "" nsv459 11 99942414 99987163 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8955 S 9 0 1 "" NA12156 nsv38828 11 100155522 100155522 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57406 M 24 "" nsv460 11 100166501 100199026 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5374 S 9 1 0 "" NA19129 nsv468849 11 100218437 100238330 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543917 S 1557 0 1 "" 1780854117_A nsv518618 11 100373856 100379529 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696066 S 2026 0 1 "" nsv522843 11 100374171 100383708 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698496 S 2026 1 0 "" nsv517236 11 100375704 100379529 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv668094,nssv683774,nssv690208,nssv686049,nssv674768,nssv704841,nssv654091,nssv661755,nssv664682,nssv674870,nssv688969,nssv679969,nssv653205,nssv668970 M 2026 1 13 "" nsv509440 11 100573075 100644283 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620871 S 4 1 0 "" NA15510 nsv516828 11 100578015 100578882 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv658866,nssv657608,nssv690474,nssv654279,nssv688062 M 2026 0 5 "" nsv832247 11 100628693 100803997 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449445 S 95 1 0 "" nsv38688 11 100762083 100762083 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57266 M 24 "" nsv468851 11 100773657 100836017 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543918 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01198 nsv468852 11 100909855 100941899 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543919 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00438 nsv519281 11 100909855 100941899 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv673984,nssv655203 M 2026 2 0 "" nsv507611 11 100944105 100950105 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619055 S 4 1 0 "" NA10860 nsv461 11 101039317 101089214 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1958,nssv1034,nssv6478,nssv9274,nssv10835,nssv3985,nssv5375 M 9 0 7 "" NA12156,NA12878,NA18517,NA18555,NA18956,NA19129,NA19240 nsv468853 11 101044618 101121906 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543920 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01258 nsv508653 11 101054071 101079261 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619987 S 4 0 1 "" NA15510 nsv511007 11 101054071 101102006 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618619 S 4 0 0 "" CHM nsv74 11 101065750 101113874 CNV Loss Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv74 S 1 0 1 "" NA15510 nsv832249 11 101077029 101254283 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449447,nssv1449446 M 95 1 1 "" nsv527220 11 101096401 101115590 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703620 S 2026 1 0 "" nsv832250 11 101123144 101309230 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449448 S 95 1 0 "" nsv507612 11 101196305 101202305 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617818 S 4 1 0 "" CHM nsv527254 11 101466109 101467985 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703658 S 2026 0 1 "" nsv832251 11 101517505 101686954 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449449 S 95 0 1 "" nsv468854 11 101841827 101919153 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543921 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00563 nsv507613 11 101881288 101887288 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620372 S 4 1 0 "" NA15510 nsv818861 11 101921069 101929100 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417412 S 112 0 1 "" NA18951 nsv462 11 101943881 101976567 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1035 S 9 1 0 "" NA19240 nsv832252 11 101950689 102133089 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449452,nssv1449450 M 95 2 0 "" esv33374 11 101982627 101985050 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93675 S 51 0 1 "" 21972 nsv507614 11 101985050 101991050 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617819,nssv623020 M 4 2 0 "" CHM,NA18994 esv33621 11 101993365 101994331 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98797 S 51 0 1 "" 21606 nsv38595 11 102106862 102106983 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57173 M 24 "" nsv463 11 102116195 102149140 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1959 S 9 1 0 "" NA18555 nsv516310 11 102288920 102290592 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv667491,nssv688417 M 2026 0 2 "" nsv464 11 102297984 102330509 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10836 S 9 1 0 "" NA18956 nsv465 11 102302577 102347426 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8956 S 9 0 1 "" NA12156 nsv832253 11 102351133 102546608 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449453 S 95 1 0 "" nsv468855 11 102442889 102561890 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543922 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01348 dgv432e1 11 102541001 102720677 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1243,essv5763 M 271 0 0 "" NA18540 nsv523713 11 102549248 102561890 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699526 S 2026 1 0 "" esv2750977 11 102587768 103430000 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6987711,essv6984910,essv6984909,essv6987712,essv6984911 M 771 1 0 "" SPC_193 nsv39433 11 102593155 102593310 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv58011 M 24 "" nsv521204 11 102605727 102803176 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697843 S 2026 0 1 "" esv33410 11 102646923 102656077 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99625 S 51 0 1 "" 22217 nsv516744 11 102885973 102897552 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv661136,nssv674789,nssv670580,nssv690881,nssv678661,nssv692050,nssv691618 M 2026 0 7 "" nsv38767 11 102916042 102916354 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57345 M 24 "" nsv526530 11 102917974 102923294 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702843 S 2026 0 1 "" nsv467 11 103150047 103181726 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6479 S 9 1 0 "" NA12156 nsv38514 11 103308123 103312746 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57092 M 24 "" nsv526709 11 103441679 103451371 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703048 S 2026 0 1 "" esv2750978 11 103470000 104851268 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6984833,essv6984835,essv6984834,essv6984832,essv6984831 M 771 1 0 "" SPC_183 nsv519705 11 103483750 103487043 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697002 S 2026 0 1 "" nsv507615 11 103680902 103686902 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619056,nssv620380,nssv617820,nssv623024 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv511008 11 103750930 103811889 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618620,nssv624321 M 4 0 0 "" CHM,NA18994 nsv468 11 103768103 103789308 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6481,nssv1960,nssv3986 M 9 0 3 "" NA12156,NA12878,NA18555 nsv510271 11 103770301 103776301 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621310 S 4 0 1 "" NA15510 nsv8867 11 103820771 103826404 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22561 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19240 nsv832254 11 103917979 104112487 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449454 S 95 0 1 "" esv33027 11 104173905 104176101 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99142 S 51 1 0 "" 22275 nsv832255 11 104180128 104352171 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449455 S 95 0 1 "" esv33953 11 104215160 104242742 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93209 S 51 0 1 "" 22170 dgv433e1 11 104224803 104303755 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1354,essv15180 M 271 0 0 "" NA18504 nsv8869 11 104229815 104265247 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23182,nssv22543 M 31 1 1 Samples from several populations that are part of the HapMap project. "" NA18504,NA18517 nsv468862 11 104279224 104748581 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543924 S 1557 1 0 "" 1780862563_A nsv38581 11 104283218 104284624 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57159 M 24 "" nsv469 11 104331512 104360046 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10837 S 9 1 0 "" NA18956 dgv434e1 11 104401086 104437198 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv9519,essv16617,essv13347 M 271 0 0 "" NA18500,NA18521,NA19208 esv1015 11 104401086 104484927 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 "" nsv517089 11 104420773 104435886 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv679709,nssv692529,nssv666866,nssv672727,nssv671695,nssv656321,nssv683798,nssv670602,nssv687285,nssv687317,nssv658928,nssv675624,nssv668937,nssv674156,nssv676978,nssv666813,nssv657978,nssv656386,nssv666774,nssv689568,nssv669145,nssv676209,nssv665606,nssv680370,nssv656137,nssv661632,nssv666889,nssv682448,nssv673469,nssv661895,nssv663260,nssv671924,nssv683377,nssv680184,nssv683775,nssv678842,nssv669492,nssv659154,nssv681367,nssv653766,nssv660483,nssv688438,nssv652423,nssv677082 M 2026 0 44 "" nsv470 11 104421571 104466440 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8958 S 9 0 1 "" NA12156 dgv435e1 11 104424602 104439310 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv14683,essv11069,essv8713,essv9958,essv8252,essv9862,essv15443,essv14948,essv11410,essv8986 M 271 0 0 "" NA19132,NA19138,NA19144,NA19145,NA19153,NA19192,NA19194,NA19200,NA19204,NA19206 essv12898 11 104424602 104442581 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18522 nsv8870 11 104425560 104437692 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22953,nssv23279,nssv21388 M 31 0 3 Samples from several populations that are part of the HapMap project. "" NA18502,NA19132,NA19144 dgv436e1 11 104428916 104437198 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv15910,essv12885,essv13947,essv9484,essv8579 M 271 0 0 "" NA18502,NA19130,NA19154,NA19160,NA19205 nsv442626 11 104429072 104436443 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv818862 11 104429456 104435886 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418500,nssv1418501 M 112 0 2 "" NA19192,NA19194 dgv437e1 11 104442581 104484927 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv15959,essv12133 M 271 0 0 "" NA19142,NA19173 nsv818863 11 104445414 104466207 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416039,nssv1416589,nssv1416590,nssv1416050 M 112 4 0 "" NA19140,NA19142,NA19172,NA19173 nsv8871 11 104446960 104478718 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20489 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19173 esv33277 11 104449972 104474695 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv95951 S 51 1 0 "" 22127 nsv442241 11 104455634 104477768 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv524985 11 104466207 104496850 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701014 S 2026 0 1 "" nsv528789 11 104519774 104638256 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705459 S 2026 0 1 "" nsv38978 11 104554485 104556996 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57556 M 24 "" nsv442242 11 104555015 104572108 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv471 11 104621476 104665758 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1961 S 9 0 1 "" NA18555 nsv510272 11 104645127 104651127 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624057 S 4 0 1 "" NA18994 nsv523995 11 104677259 104748581 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699855 S 2026 1 0 "" esv33350 11 104730339 104755140 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97469 S 51 0 1 "" 21616 nsv472 11 104963246 104992649 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6482 S 9 1 0 "" NA12156 nsv832256 11 105021803 105194536 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449456 S 95 1 0 "" nsv832257 11 105167963 105322786 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449457 S 95 0 1 "" nsv39184 11 105179799 105181414 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57762 M 24 "" dgv23n6 11 105270716 105271050 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv39020,nsv39011 M 24 "" dgv81n21 11 105389295 105398704 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv527285,nsv526898 M 2026 0 2 "" nsv832258 11 105805573 105932865 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449458 S 95 1 0 "" nsv516910 11 105899414 105904692 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv673332,nssv678212,nssv657857,nssv657735,nssv656723,nssv688184,nssv654882,nssv693307,nssv661217,nssv674452,nssv703489,nssv661165,nssv689481,nssv683988 M 2026 0 14 "" nsv468864 11 105903230 105904692 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543925 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00618 nsv473 11 106001082 106036538 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3987 S 9 1 0 "" NA12878 nsv39784 11 106101091 106101387 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv58362 M 24 "" nsv527620 11 106171269 106171543 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704086 S 2026 0 1 "" nsv474 11 106262230 106300356 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1962 S 9 0 1 "" NA18555 nsv39525 11 106344713 106344713 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv58103 M 24 "" nsv38495 11 106344714 106344714 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57073 M 24 "" nsv527555 11 106400242 106476691 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704016 S 2026 0 1 "" nsv832260 11 106480304 106687005 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449459 S 95 0 1 "" nsv508654 11 106485822 106520858 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619991 S 4 0 1 "" NA15510 nsv523141 11 106630113 106633224 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698848 S 2026 0 1 "" nsv527352 11 106645287 106645805 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703781 S 2026 0 1 "" nsv832261 11 106651111 106826772 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449460 S 95 0 1 "" nsv475 11 106717010 106760932 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1036,nssv9275,nssv10897 M 9 0 3 "" NA15510,NA18517,NA19240 nsv75 11 106724834 106756990 CNV Loss Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv75 S 1 0 1 "" NA15510 nsv508655 11 106727851 106762695 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618796,nssv617394,nssv619996 M 4 0 3 "" CHM,NA10860,NA15510 nsv509441 11 106727851 106762695 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623531 S 4 1 0 "" NA18994 nsv8872 11 106733574 106754830 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20395,nssv20919,nssv22982,nssv23887,nssv20120,nssv20657,nssv20687,nssv22591,nssv21037,nssv20253,nssv20254,nssv18619,nssv19202,nssv20365,nssv23307,nssv23557,nssv21128,nssv19554,nssv21007,nssv21158,nssv20224,nssv23210,nssv25436 M 31 0 18 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA11830,NA12155,NA12740,NA18502,NA18517,NA18563,NA18572,NA18853,NA18860,NA18972,NA18975,NA18980,NA19132,NA19221,NA19240 nsv433518 11 106744316 106746393 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463399 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA18517 esv33566 11 106744472 106747949 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97541,essv101110,essv100860,essv98233,essv94017,essv94441,essv96935,essv95660,essv93024,essv98951,essv93780,essv96197,essv96600,essv98583,essv99861,essv93412,essv99633,essv100112,essv100328,essv98509 M 51 16 4 "" 21616,21618,21656,21772,21802,21808,21817,21841,21863,21938,21972,22007,22011,22085,22086,22170,22217,22286,22300,22352 dgv438e1 11 106829486 106849778 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv7882,esv1202 M 271 0 0 "" NA19140 nsv442243 11 106843163 106852442 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv439e1 11 106843727 106849778 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv15980,essv15158 M 271 0 0 "" NA19142,NA19210 nsv515572 11 106845807 106852591 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705881,nssv658867,nssv663938,nssv686757,nssv682414 M 2026 0 5 "" nsv818864 11 106845807 106853487 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416061,nssv1416072 M 112 0 2 "" NA19140,NA19142 esv2422201 11 106984572 107061035 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161545 S 181 1 0 "" ND05296 nsv476 11 107022588 107056343 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8959 S 9 1 0 "" NA12156 esv2750979 11 107071767 107129408 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6986166,essv6982424,essv6982423 M 771 1 0 "" BEC_44 nsv521771 11 107095545 107409856 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694538 S 2026 1 0 "" esv33858 11 107122490 107122703 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98554 S 51 0 1 "" 22085 nsv527748 11 107133062 107175438 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704234 S 2026 1 0 "" nsv520229 11 107154236 107175438 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv684540,nssv687797,nssv662039,nssv677842,nssv662617,nssv685596,nssv693254,nssv683123 M 2026 8 0 "" nsv468867 11 107154236 107202843 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543926 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01166 nsv442244 11 107158953 107176398 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" esv2750980 11 107226151 107476196 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6981447,essv6985575,essv6981448 M 771 1 0 "" BEC_229 nsv525122 11 107266760 107271573 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701190 S 2026 0 1 "" nsv478 11 107276242 107295470 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1963 S 9 0 1 "" NA18555 nsv442627 11 107289717 107292923 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv479 11 107333692 107364426 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6483 S 9 1 0 "" NA12156 nsv507616 11 107429527 107435527 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620386,nssv623036,nssv619057 M 4 3 0 "" NA10860,NA15510,NA18994 nsv480 11 107488075 107527716 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10838,nssv3988 M 9 2 0 "" NA12878,NA18956 nsv832262 11 107629041 107814560 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449461,nssv1449463 M 95 0 2 "" nsv832263 11 107688582 107889601 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449465,nssv1449464 M 95 2 0 "" nsv832264 11 107954823 108128930 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449468,nssv1449467,nssv1449466,nssv1449469,nssv1449472,nssv1449471,nssv1449470,nssv1449477,nssv1449476,nssv1449475,nssv1449474,nssv1449478 M 95 11 1 "" nsv39083 11 108291907 108298180 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57661 M 24 "" nsv437721 11 108425012 108427715 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467602 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19100 nsv438186 11 108425691 108426533 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470335,nssv470336 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA19098,NA19100 nsv481 11 108426481 108451755 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8960 S 9 0 1 "" NA12156 nsv39567 11 108661450 108661450 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv58145 M 24 "" nsv525949 11 108695464 108695555 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702156 S 2026 0 1 "" nsv482 11 109189914 109222798 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1037 S 9 1 0 "" NA19240 nsv832265 11 109417425 109601340 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449479 S 95 1 0 "" nsv523584 11 109422369 109431650 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699373 S 2026 1 0 "" nsv483 11 109484872 109518365 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1038 S 9 1 0 "" NA19240 nsv39222 11 109532049 109532101 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57800 M 24 "" nsv484 11 109612000 109626779 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8961 S 9 0 1 "" NA12156 nsv485 11 109869270 109899800 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9945,nssv10839,nssv3989 M 9 3 0 "" NA12878,NA18507,NA18956 nsv509442 11 109880366 109891582 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619458 S 4 1 0 "" NA10860 nsv468868 11 109960086 109989761 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543927 S 1557 0 1 "" 1780854518_A nsv832266 11 110036221 110216712 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449481,nssv1449480 M 95 2 0 "" nsv507617 11 110153827 110159827 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623041,nssv617821 M 4 2 0 "" CHM,NA18994 nsv486 11 110177071 110210490 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1040 S 9 1 0 "" NA19240 nsv487 11 110294179 110324351 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5376 S 9 1 0 "" NA19129 nsv832267 11 110372794 110561769 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449482 S 95 1 0 "" nsv489 11 110376946 110421627 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8962 S 9 0 1 "" NA12156 nsv525209 11 110418450 110421825 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701291 S 2026 1 0 "" nsv468869 11 110418450 110448346 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543928 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00860 nsv832268 11 110687546 110899259 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449483 S 95 0 1 "" nsv490 11 110691107 110735804 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8963 S 9 0 1 "" NA12156 nsv39618 11 110728928 110728987 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv58196 M 24 "" nsv491 11 110798157 110824167 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6484 S 9 0 1 "" NA12156 nsv510273 11 110979346 110985346 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621322 S 4 0 1 "" NA15510 nsv832269 11 111065480 111255881 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449485 S 95 0 1 "" nsv492 11 111157075 111190002 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3990 S 9 1 0 "" NA12878 nsv482162 11 111284560 111287683 CNV Loss Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558523 S 1 0 1 "" KB1 nsv519192 11 111536834 111569349 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696675 S 2026 1 0 "" nsv525636 11 111548824 111568464 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701790 S 2026 0 1 "" nsv493 11 111590883 111592619 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10841 S 9 1 0 "" NA18956 nsv494 11 111637355 111676894 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8964 S 9 0 1 "" NA12156 nsv495 11 112039311 112068763 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1964 S 9 0 1 "" NA18555 nsv517298 11 112085787 112092082 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv654237,nssv667492 M 2026 2 0 "" nsv496 11 112098165 112134890 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5377,nssv1965 M 9 2 0 "" NA18555,NA19129 nsv832271 11 112348013 112383857 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449501,nssv1449502,nssv1449500,nssv1449487,nssv1449486,nssv1449489,nssv1449499,nssv1449488,nssv1449492,nssv1449491,nssv1449498,nssv1449490,nssv1449494,nssv1449493,nssv1449497,nssv1449496 M 95 16 0 "" nsv526604 11 112390291 112433374 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702924 S 2026 0 1 "" nsv468870 11 112414065 112455992 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543929 S 1557 0 1 "" NINDS_69 nsv832272 11 112430501 112607964 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449503 S 95 1 0 "" nsv516224 11 112493084 112493446 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv662460,nssv666919,nssv662805,nssv686239,nssv670225,nssv657979,nssv658868,nssv673470,nssv681966,nssv691533 M 2026 0 10 "" nsv515828 11 112538116 112570503 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv664912,nssv688254 M 2026 0 2 "" nsv515795 11 112772031 112778135 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv674627,nssv693486,nssv675081,nssv673389,nssv674741,nssv678843,nssv665487,nssv682394,nssv663812,nssv664816,nssv684686,nssv687925,nssv680956,nssv687146,nssv691216,nssv688020,nssv690263,nssv682317,nssv665163,nssv658707,nssv672236,nssv674969,nssv669920,nssv656198,nssv659262,nssv677211,nssv671512,nssv658966 M 2026 0 28 "" nsv523683 11 112846601 112852165 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699487 S 2026 0 1 "" nsv39055 11 112871496 112872036 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57633 M 24 "" nsv832273 11 113159963 113333516 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449504 S 95 0 1 "" nsv497 11 113219961 113252116 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1041 S 9 1 0 "" NA19240 nsv521857 11 113610805 113634267 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694631 S 2026 0 1 "" nsv498 11 113613716 113636589 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5378 S 9 0 1 "" NA19129 nsv818865 11 113627219 113628907 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417721 S 112 1 0 "" NA18999 nsv526581 11 113795579 113797224 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702899 S 2026 0 1 "" dgv440e1 11 113877495 114024335 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv316,essv6114 M 271 0 0 "" NA18532 nsv38546 11 113902373 113902442 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57124 M 24 "" nsv832274 11 113911114 114061876 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449505,nssv1449509,nssv1449508,nssv1449507 M 95 4 0 "" nsv8873 11 113972770 114022624 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19976,nssv20505,nssv18622,nssv19584,nssv20455,nssv20298,nssv23585 M 31 7 0 Samples from several populations that are part of the HapMap project. "" NA18537,NA18564,NA18942,NA18972,NA18975,NA18980,NA19007 nsv517300 11 113976286 114017837 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv671959,nssv686287,nssv659240,nssv678684,nssv654251,nssv685237,nssv681245 M 2026 0 7 "" nsv507618 11 114021139 114027139 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617822 S 4 1 0 "" CHM nsv832275 11 114056337 114121069 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449511,nssv1449510 M 95 2 0 "" nsv500 11 114109336 114133189 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9276 S 9 1 0 "" NA18517 nsv832276 11 114114090 114292962 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449512 S 95 0 1 "" nsv523896 11 114120247 114126679 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699739 S 2026 1 0 "" nsv518838 11 114177129 114187583 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696291 S 2026 0 1 "" nsv832277 11 114281321 114426980 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449513 S 95 1 0 "" nsv8874 11 114326690 114331172 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20328 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18564 nsv39374 11 114467155 114467724 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57952 M 24 "" nsv501 11 114480198 114515605 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3991 S 9 1 0 "" NA12878 nsv468871 11 114646666 114687540 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543930 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00644 nsv502 11 114678042 114709414 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5379 S 9 1 0 "" NA19129 nsv832278 11 114748953 114907315 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449514 S 95 1 0 "" nsv525753 11 114805709 114807081 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701921 S 2026 0 1 "" nsv525450 11 114892659 114918203 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701578 S 2026 0 1 "" esv2750981 11 114988378 115246794 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6983325,essv6983326,essv6983327,essv6988656 M 771 1 0 "" BEC_639 nsv508656 11 115149071 115230509 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622596 S 4 0 1 "" NA18994 nsv510274 11 115200532 115206532 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618351,nssv622129,nssv621325 M 4 0 3 "" CHM,NA10860,NA15510 nsv510275 11 115257519 115263519 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618352 S 4 0 1 "" CHM nsv503 11 115324907 115359208 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3992 S 9 1 0 "" NA12878 nsv39732 11 115454716 115454716 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv58310 M 24 "" nsv504 11 115555069 115589544 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2872 S 9 1 0 "" NA18555 nsv507619 11 115582249 115588249 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619058,nssv623049,nssv620401 M 4 3 0 "" NA10860,NA15510,NA18994 nsv832279 11 115593837 115757316 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449515 S 95 0 1 "" nsv505 11 115630707 115662757 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5381 S 9 1 0 "" NA19129 nsv506 11 115674527 115698265 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9825 S 9 1 0 "" NA18507 nsv516720 11 115712512 115749078 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv693527,nssv670434 M 2026 0 2 "" nsv525881 11 115760668 115793119 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702081 S 2026 1 0 "" nsv507 11 116139429 116179996 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1042 S 9 0 1 "" NA19240 nsv832280 11 116250687 116416874 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449516,nssv1449519 M 95 1 1 "" nsv507620 11 116328416 116334416 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617823 S 4 1 0 "" CHM nsv7223 11 116470517 116585616 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3993 S 9 0 0 "" NA12878 esv33272 11 116507164 116515730 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv95056,essv95105,essv94740,essv94805,essv97858,essv95408,essv96485,essv96461,essv100177 M 51 0 6 "" 21721,21791,21837,21872,22261,22286 nsv39763 11 116538909 116538909 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv58341 M 24 "" nsv518908 11 116556375 116571900 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696368 S 2026 0 1 "" nsv524270 11 116556375 116590480 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700168 S 2026 0 1 "" nsv516483 11 116609746 116661762 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv668718,nssv674077,nssv668659,nssv688324,nssv661824,nssv663694,nssv683181 M 2026 7 0 "" nsv509443 11 116631047 116669367 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619478 S 4 1 0 "" NA10860 nsv39790 11 116696461 116696618 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv58368 M 24 "" nsv517908 11 116765285 116768313 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694179 S 2026 0 1 "" nsv39581 11 116783408 116792372 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv58159 M 24 "" nsv832282 11 116840133 117041492 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449520 S 95 1 0 "" nsv521775 11 116847018 116858213 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694541 S 2026 0 1 "" nsv508 11 116955013 117018964 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1043,nssv8965 M 9 2 0 "" NA12156,NA19240 nsv519857 11 117029753 117030086 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv678904,nssv685899,nssv693183,nssv659111 M 2026 0 4 "" nsv527773 11 117030086 117030630 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704263 S 2026 0 1 "" nsv509 11 117056315 117089029 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5382 S 9 1 0 "" NA19129 nsv517470 11 117191404 117205088 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv681593,nssv690976,nssv673581,nssv673156,nssv652115,nssv663695,nssv698365,nssv683878,nssv664156,nssv674769,nssv697154,nssv673614,nssv669787,nssv705888,nssv657802,nssv663119,nssv704517 M 2026 0 17 "" nsv526267 11 117191404 117213147 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702540 S 2026 0 1 "" nsv525055 11 117335639 117337019 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701103 S 2026 0 1 "" nsv509444 11 117409363 117493461 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620901 S 4 1 0 "" NA15510 nsv468878 11 117452908 117537452 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543932 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00244 nsv515768 11 117465637 117467118 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv685028,nssv678720,nssv664722 M 2026 0 3 "" nsv519116 11 117521249 117539411 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696592 S 2026 0 1 "" nsv511 11 117580362 117615351 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3994 S 9 1 0 "" NA12878 nsv510276 11 117640840 117646840 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618353,nssv622134,nssv621330 M 4 0 3 "" CHM,NA10860,NA15510 nsv512 11 117791937 117821546 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5383 S 9 1 0 "" NA19129 nsv513 11 117864441 117891313 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3996 S 9 1 0 "" NA12878 nsv7224 11 117940624 117946970 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5384 S 9 0 0 "" NA19129 nsv832283 11 117942715 118162403 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449521 S 95 0 1 "" nsv527864 11 117986641 118033634 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704362 S 2026 0 1 "" nsv516013 11 118407959 118408051 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv666066,nssv684451,nssv676500,nssv673431,nssv665723,nssv684900,nssv658609,nssv660553 M 2026 0 8 "" nsv510277 11 118435456 118441456 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618354,nssv622135 M 4 0 2 "" CHM,NA10860 nsv468879 11 118481929 118564614 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543933 S 1557 0 1 "" NINDS_60 nsv514 11 118490472 118519137 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8966 S 9 0 1 "" NA12156 nsv525043 11 118683850 118684217 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701087 S 2026 0 1 "" nsv528636 11 118683850 118684217 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705267 S 2026 1 0 "" nsv522705 11 118711040 118713138 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv706117 S 2026 0 1 "" nsv832284 11 118742860 118913835 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449522,nssv1449523 M 95 2 0 "" esv33796 11 118745287 118748038 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93380 S 51 1 0 "" 22170 nsv38588 11 118862201 118871373 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57166 M 24 "" nsv515 11 118863468 118908077 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4627 S 9 0 1 "" NA19129 nsv509445 11 118985166 119071092 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619489 S 4 1 0 "" NA10860 nsv468880 11 119069706 119093272 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543934 S 1557 0 1 "" NINDS_166 nsv528824 11 119155315 119167019 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705498 S 2026 0 1 "" nsv38820 11 119224710 119224997 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57398 M 24 "" nsv516 11 119253374 119278807 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8967 S 9 1 0 "" NA12156 nsv832285 11 119294805 119462934 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449524 S 95 1 0 "" nsv524406 11 119378614 119398389 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700325 S 2026 1 0 "" nsv508657 11 119396788 119476422 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620007 S 4 0 1 "" NA15510 nsv517 11 119455958 119471236 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10843 S 9 1 0 "" NA18956 nsv518463 11 119528715 119531958 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695901 S 2026 1 0 "" nsv518464 11 119545652 119615177 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695902 S 2026 0 1 "" nsv518 11 119579189 119613359 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8968 S 9 1 0 "" NA12156 nsv522706 11 119679055 119683842 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv706118 S 2026 0 1 "" nsv39754 11 119699614 119699905 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv58332 M 24 "" nsv529003 11 119714596 119860440 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705710 S 2026 0 1 "" nsv519 11 119771717 119804617 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1044 S 9 1 0 "" NA19240 nsv520 11 119834963 119869154 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1045 S 9 1 0 "" NA19240 nsv468881 11 119952040 120056310 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543935 S 1557 1 0 "" 1780854441_A nsv832286 11 120091053 120251056 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449525 S 95 0 1 "" nsv522869 11 120113295 120113871 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698524 S 2026 0 1 "" nsv524900 11 120147908 120150421 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700909 S 2026 0 1 "" nsv523053 11 120294718 120295062 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698736 S 2026 0 1 "" nsv523 11 120341562 120375049 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8969 S 9 1 0 "" NA12156 nsv524651 11 120446793 120459979 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700618 S 2026 0 1 "" nsv524 11 120468713 120513377 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8970 S 9 0 1 "" NA12156 nsv525 11 120555963 120590826 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1046 S 9 1 0 "" NA19240 nsv7225 11 120817546 120851750 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6485 S 9 0 0 "" NA12156 nsv522474 11 120862178 120941480 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705839 S 2026 0 1 "" nsv526 11 120882680 120887058 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8971 S 9 1 0 "" NA12156 nsv527072 11 120953300 120991762 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703451 S 2026 0 1 "" esv34768 11 120957861 121040148 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6990264,essv6978636 M 771 1 0 "" NA12056 nsv818867 11 120978203 121040148 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416264 S 112 1 0 "" NA12056 dgv441e1 11 120978808 121045852 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv18688,esv1197 M 271 0 0 "" NA12056 nsv8875 11 120991361 120994811 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20519 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19173 nsv832287 11 121080589 121227945 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449526 S 95 0 1 "" nsv518668 11 121098595 121109866 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696117 S 2026 0 1 "" nsv38612 11 121141630 121141681 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57190 M 24 "" nsv39116 11 121307008 121307008 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57694 M 24 "" nsv39530 11 121364432 121364432 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv58108 M 24 "" dgv17n68 11 121467901 121712630 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH nsv832289,nsv832288 M 95 2 0 "" nsv38950 11 121852787 121854490 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57528 M 24 "" nsv508658 11 121899263 121971663 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622601 S 4 0 1 "" NA18994 dgv169n27 11 122063212 122117505 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv468882,nsv468884 M 1557 0 2 "" HGDP00995,HGDP01019 nsv527 11 122103306 122137120 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1047 S 9 1 0 "" NA19240 nsv520988 11 122243020 122294665 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694502,nssv680165,nssv679214 M 2026 3 0 "" nsv510278 11 122299832 122305832 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618355 S 4 0 1 "" CHM nsv522969 11 122300898 122304440 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698639 S 2026 0 1 "" dgv442e1 11 122339246 122372360 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv13356,esv1018 M 271 0 0 "" NA19159 nsv8876 11 122346856 122350363 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20284 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA10839 nsv39419 11 122735230 122735285 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57997 M 24 "" dgv443e1 11 122784405 123050005 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv286,essv20073 M 271 0 0 "" NA07048 nsv518300 11 122900558 122901074 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695731 S 2026 0 1 "" nsv528 11 122908057 122939829 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10844 S 9 1 0 "" NA18956 nsv818868 11 123083838 123097449 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417634 S 112 1 0 "" NA18987 nsv529 11 123153872 123162147 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8972 S 9 0 1 "" NA12156 nsv510279 11 123186579 123192579 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621334,nssv618356,nssv624072 M 4 0 3 "" CHM,NA15510,NA18994 nsv525836 11 123195542 123199016 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702028 S 2026 1 0 "" dgv82n21 11 123276969 123664385 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv527167,nsv525021 M 2026 2 0 "" nsv518797 11 123321424 123352074 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696252 S 2026 0 1 "" nsv516962 11 123419952 123424338 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv667441,nssv680258,nssv677015,nssv668152,nssv680138,nssv669921,nssv663878,nssv683758,nssv653516,nssv671925,nssv657980,nssv657574,nssv674296,nssv653387 M 2026 0 14 "" nsv38538 11 123547940 123548713 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57116 M 24 "" nsv530 11 123590093 123592201 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1968 S 9 1 0 "" NA18555 nsv442245 11 123592514 123601125 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv507621 11 123719602 123725602 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620419,nssv623063 M 4 2 0 "" NA15510,NA18994 nsv507622 11 123840424 123846424 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619059,nssv623067 M 4 2 0 "" NA10860,NA18994 nsv518199 11 123891221 123955190 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695622 S 2026 1 0 "" nsv521879 11 123932140 123935961 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694650 S 2026 1 0 "" nsv531 11 124242020 124279531 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10845,nssv1049 M 9 2 0 "" NA18956,NA19240 nsv520150 11 124246982 124264258 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697250 S 2026 0 1 "" nsv520010 11 124333145 124440567 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv660074,nssv681477,nssv663232 M 2026 0 3 "" nsv39015 11 124335349 124335456 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57593 M 24 "" nsv525136 11 124450756 124451444 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701206 S 2026 0 1 "" nsv527157 11 124450756 124470580 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703549 S 2026 0 1 "" nsv832290 11 124487812 124646260 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449531,nssv1449530 M 95 1 1 "" nsv468885 11 124567002 124589952 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543939 S 1557 0 1 "" NINDS_272 dgv83n21 11 124575602 124593480 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv517656,nsv521936 M 2026 0 30 "" dgv444e1 11 124580498 124605648 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv24321,esv1423 M 271 0 0 "" NA11882 nsv818869 11 124580785 124589952 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418097 S 112 0 1 "" NA11882 nsv468887 11 124589952 124629183 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543940 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00897 nsv523559 11 124677803 124677884 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699339 S 2026 0 1 "" nsv528236 11 124677884 124680691 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704798 S 2026 0 1 "" nsv525451 11 124766961 124772103 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701579 S 2026 0 1 "" nsv38673 11 124799847 124800146 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57251 M 24 "" nsv532 11 124837906 124863727 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8974 S 9 0 1 "" NA12156 esv32964 11 124870175 125421492 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98712,essv100855,essv98625,essv99361 M 51 2 2 "" 21606,21656,22085,22335 nsv39485 11 125054335 125060052 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv58063 M 24 "" nsv519206 11 125098119 125123118 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696695 S 2026 1 0 "" nsv482163 11 125121398 125124952 CNV Loss Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558524 S 1 0 1 "" KB1 nsv534 11 125124733 125157867 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8975 S 9 1 0 "" NA12156 nsv468888 11 125153426 125271254 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543941 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00243 nsv535 11 125293596 125338476 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8976 S 9 0 1 "" NA12156 nsv516919 11 125317560 125330918 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv692603,nssv691217,nssv698963,nssv663571,nssv699931,nssv654986 M 2026 0 6 "" nsv507623 11 125458848 125464848 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620423,nssv623072 M 4 2 0 "" NA15510,NA18994 nsv536 11 125538653 125582815 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3997 S 9 0 1 "" NA12878 nsv525213 11 125546414 125565293 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701296 S 2026 0 1 "" nsv523976 11 125559495 125562554 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699831 S 2026 0 1 "" nsv528454 11 125560250 125561724 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705053 S 2026 0 1 "" nsv519844 11 125571250 125573852 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697081 S 2026 0 1 "" nsv515958 11 125572158 125573852 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv673471,nssv656537,nssv661317,nssv660770,nssv682587,nssv681620,nssv690909,nssv665472,nssv678862,nssv676727 M 2026 0 10 "" nsv537 11 125591600 125620856 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1050 S 9 1 0 "" NA19240 nsv527257 11 125747907 125751286 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703661 S 2026 1 0 "" nsv523864 11 126103574 126106342 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699701 S 2026 1 0 "" nsv524109 11 126107663 126110244 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699987 S 2026 0 1 "" nsv538 11 126184030 126212953 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1969 S 9 1 0 "" NA18555 nsv539 11 126359959 126384633 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3998 S 9 1 0 "" NA12878 nsv528676 11 126470993 126471177 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705316 S 2026 0 1 "" nsv527631 11 126542835 126560326 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704099 S 2026 1 0 "" nsv523151 11 126556731 126564157 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698859 S 2026 0 1 "" nsv528334 11 126661942 126703754 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704916 S 2026 1 0 "" nsv519489 11 126675983 126693718 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696879 S 2026 1 0 "" nsv818870 11 126700597 126709174 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418393 S 112 0 1 "" NA12239 dgv445e1 11 126701966 126709174 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv22729,esv1209 M 271 0 0 "" NA12239 dgv24n6 11 126961509 126961644 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv38637,nsv38826 M 24 "" nsv818871 11 127094060 127100594 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415688,nssv1415689 M 112 0 2 "" NA10835,NA12248 nsv526723 11 127176525 127301560 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703063 S 2026 1 0 "" nsv515707 11 127472564 127491412 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv679638,nssv661625,nssv681637,nssv668167,nssv658184,nssv693275,nssv660617,nssv681074,nssv690847,nssv651886,nssv683736,nssv665407,nssv666775,nssv653355,nssv659958,nssv662806 M 2026 0 16 "" nsv39794 11 127548167 127548493 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv58372 M 24 "" nsv520622 11 127587605 127594145 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv673288,nssv691435 M 2026 0 2 "" nsv540 11 127656405 127673384 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3999 S 9 1 0 "" NA12878 nsv520669 11 127687731 127692593 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697548 S 2026 0 1 "" nsv510280 11 127700810 127706810 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622144 S 4 0 1 "" NA10860 nsv541 11 127758267 127803291 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8977 S 9 0 1 "" NA12156 nsv542 11 127810163 127822396 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5385 S 9 0 1 "" NA19129 nsv442246 11 127838729 127840260 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv517012 11 127888014 127893983 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv671637,nssv669881,nssv660118,nssv656583,nssv651769,nssv678164,nssv661269,nssv690652,nssv684983,nssv662901,nssv671075,nssv684115,nssv693847,nssv675691,nssv678090,nssv678450,nssv690791,nssv689659,nssv675104,nssv683855,nssv667309,nssv692111,nssv684854,nssv687954,nssv657782,nssv685477,nssv667615,nssv683580,nssv685176,nssv656026,nssv667419,nssv668329,nssv664520,nssv692399,nssv679488,nssv690848,nssv672854,nssv682794,nssv684666,nssv658783,nssv661119,nssv682221,nssv669354,nssv658221,nssv682165,nssv675719,nssv673582,nssv691866,nssv673077,nssv675984,nssv656001,nssv678905,nssv672756,nssv667105,nssv664723,nssv657092,nssv674404,nssv677370,nssv675593,nssv682253,nssv683160,nssv661062,nssv675757,nssv653614,nssv663771,nssv693370,nssv669576,nssv693005,nssv683462,nssv688136,nssv679395,nssv680315,nssv676251,nssv693773,nssv686829,nssv670135,nssv693868,nssv680009,nssv679463,nssv667137,nssv693426,nssv656273,nssv677689,nssv681638,nssv654092,nssv695174,nssv674192,nssv668938,nssv674652,nssv684795,nssv693276,nssv680284,nssv677443,nssv674329,nssv652424,nssv682951,nssv668531,nssv688697,nssv682588,nssv671441,nssv693737,nssv659292,nssv685900,nssv680139,nssv675896,nssv656629,nssv657338,nssv685193,nssv666313,nssv656469,nssv665834,nssv677016,nssv656199,nssv669527,nssv653717,nssv690508,nssv692420,nssv683879,nssv656963,nssv691140,nssv672345,nssv654340,nssv684090,nssv668302,nssv671256,nssv670603,nssv691568,nssv665200,nssv685891,nssv689196,nssv665164,nssv684965,nssv684390,nssv686064,nssv688611,nssv691363,nssv672260,nssv678501,nssv661318,nssv670158,nssv660822,nssv675625,nssv661756,nssv692201,nssv692703,nssv651726,nssv669957,nssv653767,nssv693130,nssv687147,nssv664447,nssv670851,nssv657249,nssv653277,nssv659325,nssv662807,nssv661923,nssv671564,nssv665327,nssv676728,nssv664644,nssv659915,nssv664304,nssv684611,nssv667890,nssv652856,nssv656796,nssv681682,nssv676315,nssv660771,nssv659976,nssv677606,nssv672298,nssv653944,nssv663813,nssv689374,nssv692831,nssv669592,nssv670061,nssv655056,nssv673157,nssv691997,nssv677389,nssv661825,nssv673432,nssv690438,nssv664590,nssv685835,nssv659891,nssv666118,nssv672011,nssv680791,nssv666609,nssv664157,nssv653133,nssv677763,nssv687926,nssv658410,nssv664101,nssv659681,nssv681153,nssv653424,nssv684181,nssv668971,nssv678587,nssv681573,nssv668095,nssv656322,nssv685329,nssv664275,nssv681549,nssv689891,nssv670340,nssv664817 M 2026 0 214 "" nsv521429 11 127976450 127980211 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698039 S 2026 0 1 "" nsv543 11 128095271 128129099 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4000 S 9 1 0 "" NA12878 nsv468891 11 128164697 128175030 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543942 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01077 nsv526725 11 128173012 128173302 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703065 S 2026 0 1 "" nsv545 11 128182285 128201577 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8978 S 9 0 1 "" NA12156 nsv38628 11 128187928 128188620 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57206 M 24 "" nsv468892 11 128278623 128309999 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543943 S 1557 0 1 "" NINDS_200 dgv84n21 11 128309999 128324002 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv528381,nsv522732 M 2026 0 2 "" nsv525837 11 128344366 128348083 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702029 S 2026 0 1 "" nsv832291 11 128467181 128620000 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449533,nssv1449532 M 95 0 2 "" nsv546 11 128796979 128820722 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9826 S 9 1 0 "" NA18507 nsv832293 11 128851141 129033043 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449534 S 95 0 1 "" nsv507624 11 128873910 128879910 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619060,nssv617824 M 4 2 0 "" CHM,NA10860 nsv547 11 128886904 128931690 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8979 S 9 0 1 "" NA12156 nsv38903 11 128955569 128955569 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57481 M 24 "" nsv832294 11 128963310 129120160 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449535 S 95 1 0 "" nsv516228 11 129056603 129065794 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv666964,nssv678451,nssv677607 M 2026 0 3 "" nsv548 11 129121212 129154600 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8980 S 9 1 0 "" NA12156 nsv39607 11 129221585 129226648 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv58185 M 24 "" nsv468893 11 129283582 129310023 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543944 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01021 nsv39533 11 129341195 129344745 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv58111 M 24 "" nsv832295 11 129474317 129635298 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449536 S 95 1 0 "" essv12346 11 129474432 129635215 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19138 dgv446e1 11 129474432 129847927 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv644,essv438 M 271 0 0 "" NA18952 nsv549 11 129480011 129512609 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10846 S 9 1 0 "" NA18956 nsv517199 11 129530155 129581544 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv669701,nssv696967,nssv671514,nssv672237,nssv653992,nssv688570,nssv665624,nssv685085,nssv684796,nssv700230,nssv670950,nssv667420,nssv677807,nssv692888 M 2026 0 14 "" dgv3e24 11 129565193 129577412 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH esv2750561,esv2750625 M 51 2 0 "" 21634,22352 nsv468896 11 129592155 129665085 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543946 S 1557 0 1 "" 1780862229_A esv33203 11 129602921 129624529 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100820 S 51 0 1 "" 21656 nsv39016 11 129620673 129620722 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57594 M 24 "" nsv818872 11 129620956 129715798 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417425 S 112 0 1 "" NA18952 essv506 11 129633534 129715211 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18952 esv34550 11 129638425 129715211 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6988311,essv6980097 M 771 0 1 "" NA18952 nsv508660 11 129772733 129878695 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622611 S 4 0 1 "" NA18994 nsv550 11 129801193 129835353 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8981 S 9 1 0 "" NA12156 nsv8877 11 129821444 129829952 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21188 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA12155 nsv8878 11 129852398 129854960 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18652,nssv20549 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18942,NA19173 nsv528299 11 129936692 129945533 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704875 S 2026 0 1 "" nsv508661 11 129952081 130024282 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620013,nssv622614 M 4 0 2 "" NA15510,NA18994 nsv526747 11 129986747 130117948 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703092 S 2026 1 0 "" nsv507625 11 130165321 130171321 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620431,nssv619061,nssv623080 M 4 3 0 "" NA10860,NA15510,NA18994 nsv551 11 130203720 130248674 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8982 S 9 0 1 "" NA12156 nsv552 11 130275319 130286880 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1970 S 9 0 1 "" NA18555 nsv468897 11 130430227 130475753 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543947 S 1557 0 1 "" 1780862433_A nsv39257 11 130469229 130469303 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57835 M 24 "" dgv447e1 11 130484613 130489555 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1010,essv4353 M 271 0 0 "" NA18622 nsv509447 11 130552572 130552572 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618088 S 4 1 0 "" CHM nsv507626 11 130554589 130560589 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620438 S 4 1 0 "" NA15510 dgv448e1 11 130938011 131254195 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv21811,essv9168,essv12271,essv19402,essv15741,essv8158,essv16887,essv14629,essv4274,esv211,essv12379,essv17306,essv23558,essv11543,essv9660,essv16492,essv10363 M 271 0 0 "" NA06993,NA11839,NA11840,NA18603,NA18856,NA18913,NA19093,NA19101,NA19128,NA19131,NA19173,NA19205,NA19206,NA19210,NA19222,NA19238 nsv519866 11 130970406 130987364 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697092 S 2026 0 1 "" nsv526844 11 131020866 131024145 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703202 S 2026 1 0 "" nsv553 11 131040880 131075057 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1051,nssv5387 M 9 2 0 "" NA19129,NA19240 nsv510281 11 131107381 131113381 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618357 S 4 0 1 "" CHM nsv468898 11 131118832 131154656 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543948 S 1557 1 0 "" 1780854295_A nsv517550 11 131150645 131173745 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv669546,nssv652336,nssv692866,nssv672584,nssv704881,nssv656912,nssv676407,nssv670774,nssv705567 M 2026 7 2 "" nsv522510 11 131386237 131388017 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705878 S 2026 0 1 "" nsv554 11 131426210 131434196 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1971 S 9 1 0 "" NA18555 nsv832296 11 131506987 131598665 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449537 S 95 1 0 "" nsv556 11 131556706 131601157 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8983 S 9 0 1 "" NA12156 nsv39518 11 131581952 131581952 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv58096 M 24 "" nsv518815 11 131904482 131909665 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696268 S 2026 1 0 "" nsv511010 11 132066869 132079448 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624326 S 4 0 0 "" NA18994 nsv557 11 132304532 132330165 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8985 S 9 0 1 "" NA12156 dgv54e55 11 132316000 132797586 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv2750983,esv2750982 M 771 2 0 "" BEC_631,BEC_795 nsv521504 11 132325094 132329581 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698121 S 2026 0 1 "" nsv522776 11 132325094 132334045 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698417 S 2026 0 1 "" nsv39130 11 132396780 132396780 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57708 M 24 "" nsv517552 11 132429624 132440598 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv668446,nssv684091,nssv669446,nssv696419,nssv672824,nssv694921,nssv674078,nssv681850,nssv691968,nssv670707,nssv658572,nssv659571,nssv652337 M 2026 0 13 "" nsv510282 11 132481943 132487943 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621350,nssv622148,nssv624088 M 4 0 3 "" NA10860,NA15510,NA18994 dgv85n21 11 132493789 132510059 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv523117,nsv516629 M 2026 0 11 "" nsv508662 11 132530838 132619772 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618826 S 4 0 1 "" NA10860 nsv525431 11 132803817 132811355 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701558 S 2026 0 1 "" nsv517407 11 132825285 132826177 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv654719,nssv685864,nssv657152,nssv684239,nssv654436,nssv653849,nssv678924,nssv661870,nssv684562,nssv677356,nssv667912,nssv658008,nssv664940,nssv656562,nssv685836,nssv665986,nssv693894,nssv668841,nssv667558,nssv662808,nssv665532,nssv653206,nssv658635,nssv673599,nssv660772,nssv663333,nssv691099,nssv652616,nssv670038,nssv652593,nssv653993,nssv693091,nssv657981,nssv664972,nssv654798,nssv663879,nssv663354,nssv666548,nssv658708,nssv653919,nssv664724 M 2026 0 41 "" nsv818873 11 132825285 132826177 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416965 S 112 0 1 "" NA19138 nsv38926 11 133025127 133025127 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57504 M 24 "" nsv38609 11 133025180 133025180 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57187 M 24 "" nsv558 11 133046518 133060513 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8986 S 9 1 0 "" NA12156 nsv559 11 133071741 133105851 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2873 S 9 1 0 "" NA18555 nsv528474 11 133133795 133148854 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705077 S 2026 0 1 "" nsv468900 11 133263747 133288442 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543949 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00976 nsv560 11 133364903 133396244 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10847 S 9 1 0 "" NA18956 nsv523202 11 133388098 133388280 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698921 S 2026 0 1 "" dgv18n68 11 133436383 133485883 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH nsv832297,nsv832298 M 95 0 2 "" nsv521581 11 133501689 134147842 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698196 S 2026 1 0 "" nsv832299 11 133545363 133721889 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449541,nssv1449542,nssv1449543 M 95 0 3 "" nsv468901 11 133641403 133715739 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543950 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00625 dgv170n27 11 133654284 133715739 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv468904,nsv468908,nsv468902 M 1557 3 0 "" HGDP00230,HGDP01184,HGDP01329 nsv516459 11 133654284 133722075 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv692985,nssv691711,nssv672299,nssv703662,nssv668532,nssv683581,nssv684190,nssv677980,nssv683940 M 2026 3 6 "" dgv171n27 11 133663955 133715739 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv468907,nsv468909,nsv468903,nsv468906 M 1557 0 4 "" HGDP00031,HGDP00205,HGDP00775,NINDS_26 dgv4e196 11 133679543 134119769 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array esv2422337,esv2422259 M 181 2 0 "" ND02256,ND03627 nsv521623 11 133682485 134132097 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694467 S 2026 1 0 "" nsv561 11 133728651 133755602 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5388 S 9 1 0 "" NA19129 nsv524977 11 133745734 133750494 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701006 S 2026 0 1 "" esv2750984 11 133811431 133922969 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6986430,essv6983423 M 771 1 0 "" BEC_652 dgv55e55 11 133816000 134263730 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv2750986,esv2750985 M 771 2 0 "" BEC_521,SPC_10 nsv39776 11 133827065 133827134 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv58354 M 24 "" dgv172n27 11 133849939 134239506 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv468924,nsv468922,nsv468919,nsv468913,nsv468923,nsv468920,nsv468918,nsv468929,nsv468921,nsv468917 M 1557 10 0 "" 1780854445_A,1780854467_A,1780862388_A,1780862484_A,1780862540_A,1782681210_A,1798860280_A,HGDP00671,NINDS_135,NINDS_147 nsv517742 11 133851329 134239506 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv660646,nssv681851,nssv681096,nssv691551,nssv699881,nssv660554,nssv701282,nssv679070,nssv702829,nssv667462,nssv680301,nssv663316,nssv661185,nssv659587,nssv669370,nssv657982,nssv665328,nssv674297,nssv692642,nssv705029,nssv686858,nssv654353,nssv674825,nssv653074,nssv657093,nssv681246 M 2026 20 6 "" nsv468928 11 133859722 133971866 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543970 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00491 nsv510283 11 133991925 133997925 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621354 S 4 0 1 "" NA15510 esv2422348 11 134065431 134179378 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161500 S 181 1 0 "" ND05691 nsv8881 11 134079182 134112735 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23914,nssv20717,nssv23335,nssv20949,nssv20283,nssv18682,nssv25490,nssv21478,nssv23238,nssv18220,nssv20485,nssv22621,nssv20535,nssv18401,nssv20150,nssv21218,nssv19232,nssv20206,nssv22573,nssv20579,nssv23613,nssv18649,nssv20358,nssv23010,nssv20006,nssv20046,nssv21097,nssv20314,nssv19614 M 31 29 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10863,NA11830,NA12155,NA12740,NA12802,NA12872,NA18502,NA18504,NA18517,NA18537,NA18552,NA18563,NA18564,NA18572,NA18853,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19144,NA19173,NA19221,NA19240 nsv818874 11 134081426 134103253 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418188,nssv1418189 M 112 2 0 "" NA19143,NA19145 nsv468935 11 134081426 134108466 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543972 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00924 nsv442247 11 134085524 134108160 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv449e1 11 134085801 134113081 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv11363,essv16599 M 271 0 0 "" NA18858,NA18860 esv1433 11 134085801 134147144 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 "" dgv173n27 11 134103253 134122531 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv468939,nsv468936,nsv468937 M 1557 3 0 "" 1780862310_A,HGDP00208,NINDS_123 nsv562 11 134105347 134113585 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4001 S 9 0 1 "" NA12878 esv34216 11 134106222 134131333 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6979321,essv6979322,essv6990350 M 771 1 0 "" NA18529 esv33486 11 134108809 134112837 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101188,essv93910,essv96854,essv94095,essv95687,essv95502,essv99066,essv92797,essv98119,essv100294,essv99389,essv98396 M 51 1 11 "" 21618,21634,21659,21802,21841,21847,21938,21944,22259,22300,22335,22352 dgv450e1 11 134113081 134147144 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv4532,essv6539,essv1662 M 271 0 0 "" NA18566,NA18611,NA18961 essv4519 11 134113289 134131333 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18623 nsv468940 11 134113328 134122531 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543976 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01254 nsv442248 11 134119190 134132093 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv818875 11 134119393 134132097 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417108 S 112 1 0 "" NA18529 essv4101 11 134120636 134131333 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18529 dgv56e55 11 134121000 134131333 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv34449,esv34369 M 771 2 0 "" NA18566,NA18611 nsv563 11 134122427 134157753 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1052 S 9 1 0 "" NA19240 nsv38690 11 134125047 134125118 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57268 M 24 "" nsv832300 11 134144181 134341450 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449544 S 95 1 0 "" nsv564 11 134207001 134240425 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5389 S 9 1 0 "" NA19129 nsv468941 11 134211153 134255459 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543977 S 1557 1 0 "" NINDS_162 nsv510284 11 134220589 134226589 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622151 S 4 0 1 "" NA10860 nsv524252 11 134226681 134243480 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700148 S 2026 0 1 "" nsv525201 11 134244141 134247906 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701283 S 2026 0 1 "" nsv519954 11 134265783 134278635 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697144 S 2026 0 1 "" dgv86n21 11 134268351 134349020 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv518392,nsv523390 M 2026 0 2 "" nsv520057 11 134292195 134331468 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697199 S 2026 1 0 "" nsv565 11 134327223 134339349 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1972 S 9 0 1 "" NA18555 nsv39258 11 134404665 134404742 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv57836 M 24 "" nsv522313 11 134432384 134445626 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695093 S 2026 1 0 "" nsv8882 12 11657 57115 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21127,nssv25513,nssv23941 M 31 2 1 Samples from several populations that are part of the HapMap project. "" NA11830,NA18860,NA19221 nsv832301 12 16595 139071 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449545,nssv1449546 M 95 1 1 "" nsv832302 12 36819 214262 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449547 S 95 1 0 "" nsv468943 12 64079 148637 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543978 S 1557 1 0 "" NINDS_73 nsv567 12 80149 107815 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5390 S 9 1 0 "" NA19129 nsv568 12 125109 159147 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2874 S 9 1 0 "" NA18555 dgv87n21 12 130943 173581 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv515938,nsv517911 M 2026 0 13 "" nsv468947 12 149719 248165 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543979 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00937 nsv569 12 159235 175985 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4002 S 9 0 1 "" NA12878 nsv523142 12 169304 203121 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698849 S 2026 1 0 "" dgv451e1 12 205271 303412 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv18027,essv18788 M 271 0 0 "" NA12878,NA12891 dgv452e1 12 205271 860805 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv11814,esv661 M 271 0 0 "" NA18521 nsv570 12 237052 266084 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4003 S 9 0 1 "" NA12878 esv34939 12 242047 303412 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6979090,essv6988100 M 771 0 1 "" NA12891 nsv521387 12 243381 258468 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697997 S 2026 1 0 "" nsv442249 12 248989 255352 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" esv33025 12 297784 302927 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93998 S 51 1 0 "" 21802 nsv8883 12 300400 303084 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23266,nssv20036,nssv18635,nssv18712 M 31 1 3 Samples from several populations that are part of the HapMap project. "" NA10847,NA18517,NA18942,NA19007 esv33918 12 302927 306716 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv96537 S 51 1 0 "" 22261 nsv442250 12 303069 414108 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" essv9499 12 303412 413467 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18521 nsv571 12 387223 429908 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5391,nssv1053 M 9 2 0 "" NA19129,NA19240 nsv509448 12 388234 411870 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618089 S 4 1 0 "" CHM nsv8884 12 393986 408850 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18742,nssv20609,nssv18679,nssv22603,nssv23038,nssv19644,nssv20106,nssv20344,nssv20565,nssv20236,nssv20777,nssv23641,nssv20388 M 31 2 11 Samples from several populations that are part of the HapMap project. "" NA10839,NA10863,NA18502,NA18504,NA18537,NA18552,NA18563,NA18564,NA18572,NA18942,NA18972,NA18975,NA19173 nsv468948 12 454615 488242 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543980 S 1557 1 0 "" NINDS_217 nsv468951 12 495208 653745 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543983 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00937 nsv8885 12 502781 504968 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18802 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18942 nsv8886 12 515433 518042 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21508 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19144 nsv8887 12 530087 537136 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23096 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18502 nsv519441 12 539571 586770 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694072 S 2026 1 0 "" nsv527632 12 560734 568895 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704100 S 2026 0 1 "" nsv818876 12 642719 666392 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417393 S 112 1 0 "" NA18949 dgv174n27 12 642719 673749 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv468958,nsv468957 M 1557 2 0 "" HGDP01250,HGDP01345 nsv518881 12 643523 666392 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696340 S 2026 1 0 "" nsv520819 12 650167 659891 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv675760,nssv678504 M 2026 0 2 "" essv9497 12 656499 834812 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18521 nsv511011 12 718807 745308 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622386 S 4 0 0 "" NA10860 nsv468959 12 720874 792669 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543986 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00206 nsv518946 12 724592 831597 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696412 S 2026 0 1 "" nsv437133 12 736231 758581 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467014 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA12802 nsv8888 12 736616 745394 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20515,nssv20266,nssv23363,nssv20313,nssv21157,nssv23124,nssv22651,nssv22633,nssv18461,nssv18709,nssv20136,nssv20639,nssv19262,nssv18832,nssv18665,nssv20448,nssv21538,nssv20066,nssv23968,nssv20180,nssv20595,nssv25536,nssv19674,nssv23669,nssv23294,nssv20374 M 31 26 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10847,NA10863,NA11830,NA12872,NA18502,NA18504,NA18517,NA18537,NA18552,NA18564,NA18572,NA18853,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19144,NA19173,NA19221,NA19240 nsv442628 12 739370 744290 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv524544 12 760163 792669 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700495 S 2026 1 0 "" nsv522901 12 792669 838750 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698559 S 2026 1 0 "" nsv468960 12 845537 1325367 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543987 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00937 nsv468962 12 917792 990219 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543989 S 1557 1 0 "" NINDS_247 nsv516003 12 943313 948337 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv665662,nssv693566,nssv681116,nssv671144,nssv682484,nssv698086,nssv678091 M 2026 0 7 "" nsv818878 12 945143 948337 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416482 S 112 0 1 "" NA18516 nsv521937 12 945797 951115 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694706 S 2026 0 1 "" nsv524382 12 978991 995736 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700297 S 2026 0 1 "" nsv515491 12 990219 995736 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv653301,nssv676319 M 2026 0 2 "" esv32742 12 1004613 1005849 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98728 S 51 0 1 "" 21606 nsv572 12 1029433 1050209 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9946 S 9 1 0 "" NA18507 nsv524525 12 1142624 1236772 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700474 S 2026 0 1 "" nsv519502 12 1184691 1236772 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700326,nssv656444,nssv660011 M 2026 0 3 "" nsv520059 12 1380901 1384282 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697200 S 2026 0 1 "" nsv573 12 1430428 1474800 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1973 S 9 0 1 "" NA18555 nsv832304 12 1580510 1738903 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449554,nssv1449550,nssv1449553,nssv1449549,nssv1449552,nssv1449555,nssv1449548,nssv1449556,nssv1449559,nssv1449558,nssv1449557 M 95 11 0 "" nsv527641 12 1619095 1620308 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704111 S 2026 0 1 "" nsv523570 12 1620166 1623551 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699352 S 2026 0 1 "" nsv832305 12 1640113 1806315 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449560 S 95 1 0 "" nsv510285 12 1703904 1709904 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624091,nssv622154,nssv618358,nssv621356 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv832306 12 1717987 1871569 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449561 S 95 0 1 "" nsv53173 12 1734273 1734587 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71751 M 24 "" dgv175n27 12 1778114 1803814 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv468966,nsv468965 M 1557 0 2 "" HGDP00546,NINDS_173 nsv518013 12 1784534 1823251 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695425 S 2026 0 1 "" nsv524974 12 1807249 1808062 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700999 S 2026 0 1 "" nsv523186 12 1807772 1808062 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698900 S 2026 0 1 "" nsv516798 12 1823251 1843645 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv676374,nssv670983,nssv657858,nssv671606 M 2026 0 4 "" nsv518786 12 1868305 1886583 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696240 S 2026 1 0 "" nsv516230 12 1878809 1879060 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv660619,nssv666966 M 2026 0 2 "" nsv53217 12 1888161 1888238 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71795 M 24 "" nsv521838 12 1930841 2169941 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694611 S 2026 1 0 "" nsv525455 12 1935631 2005287 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701583 S 2026 0 1 "" nsv574 12 1982138 2015237 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1974 S 9 1 0 "" NA18555 nsv53850 12 2085354 2085886 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv72428 M 24 "" dgv25n6 12 2086665 2086796 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv53458,nsv53659 M 24 "" dgv176n27 12 2097572 2139849 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv468968,nsv468967 M 1557 0 2 "" HGDP00708,HGDP01303 nsv521953 12 2105889 2117440 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694722 S 2026 0 1 "" nsv516496 12 2107103 2138404 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv655277,nssv671319,nssv684096,nssv659083,nssv668950,nssv689122,nssv674997,nssv678470,nssv683258,nssv652525,nssv692668,nssv669882,nssv676573,nssv677401,nssv692626,nssv678119,nssv690640,nssv676805,nssv655024,nssv673370,nssv652707,nssv691367,nssv664425,nssv690209,nssv664404,nssv687472,nssv686612,nssv691366,nssv652062,nssv656258,nssv690598,nssv675958,nssv655878,nssv688613,nssv693308,nssv675758,nssv674272,nssv679272,nssv688859,nssv673001,nssv682168,nssv653111,nssv691748,nssv663371,nssv663920,nssv661222,nssv693132,nssv662486,nssv693029,nssv653009,nssv676443,nssv653949,nssv658912,nssv679490,nssv666364,nssv656446,nssv688441,nssv693186,nssv688157,nssv662508,nssv675209,nssv677845,nssv702208,nssv692605,nssv693627,nssv685036,nssv653499,nssv657039,nssv686442,nssv691203,nssv670230,nssv673276,nssv664478,nssv676821 M 2026 0 74 "" nsv8889 12 2107696 2128402 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20126,nssv24025,nssv25559,nssv18695,nssv22681,nssv20545,nssv20296,nssv20343,nssv18491,nssv23322,nssv23421,nssv18739,nssv22663,nssv20625,nssv20807,nssv20669,nssv19292,nssv18862,nssv20210,nssv21568,nssv19704,nssv18250,nssv20979,nssv23152,nssv23727,nssv20478,nssv20166,nssv21248 M 31 27 1 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10847,NA10863,NA12155,NA12740,NA12802,NA12872,NA18502,NA18504,NA18517,NA18537,NA18552,NA18563,NA18564,NA18572,NA18853,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19144,NA19173,NA19221,NA19240 nsv508663 12 2109710 2137235 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617395 S 4 0 1 "" CHM nsv818879 12 2115897 2120329 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415589,nssv1415590,nssv1416266,nssv1418098,nssv1416265 M 112 0 5 "" NA10830,NA10851,NA11881,NA12057,NA12236 dgv177n27 12 2115897 2121534 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv468969,nsv468970,nsv468971 M 1557 0 3 "" 1780862419_A,HGDP00277,NINDS_271 nsv468973 12 2115897 2155992 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543998 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00315 nsv442629 12 2116123 2128667 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv438187 12 2117440 2125588 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470337 S 269 0 1 Samples from several populations that are part of the HapMap project. "" NA12872 nsv575 12 2205902 2250044 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4004,nssv1054,nssv1975,nssv6486,nssv10848,nssv10898,nssv5392 M 9 7 0 "" NA12156,NA12878,NA15510,NA18555,NA18956,NA19129,NA19240 nsv509449 12 2205916 2258098 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620922,nssv619524,nssv623583 M 4 3 0 "" NA10860,NA15510,NA18994 nsv76 12 2229492 2241937 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv76 S 1 1 0 "" NA15510 nsv53170 12 2235409 2235409 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71748 M 24 "" nsv524111 12 2308366 2311723 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699989 S 2026 0 1 "" nsv832307 12 2328212 2518033 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449563 S 95 1 0 "" nsv507627 12 2341356 2347356 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619062,nssv617825 M 4 2 0 "" CHM,NA10860 nsv526182 12 2432802 2439719 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702444 S 2026 1 0 "" nsv509450 12 2437439 2552887 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619528,nssv623586 M 4 2 0 "" NA10860,NA18994 nsv52683 12 2441780 2441780 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71261 M 24 "" nsv576 12 2487688 2522667 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4005 S 9 1 0 "" NA12878 nsv578 12 2532561 2554286 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8987 S 9 1 0 "" NA12156 nsv832308 12 2555989 2669489 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449564 S 95 0 1 "" nsv53150 12 2646677 2646677 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71728 M 24 "" dgv19n68 12 2705497 2914865 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH nsv832309,nsv832310 M 95 0 4 "" nsv53097 12 2725237 2725237 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71675 M 24 "" nsv832311 12 2789771 2975966 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449569 S 95 0 1 "" nsv516944 12 2857835 2858205 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv685037,nssv653479 M 2026 0 2 "" nsv579 12 2919369 2925875 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5393 S 9 1 0 "" NA19129 nsv468974 12 2951881 2959821 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543999 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00628 nsv528500 12 2951881 2959821 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705105 S 2026 0 1 "" nsv523615 12 2989074 2994413 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699411 S 2026 0 1 "" nsv468975 12 2996301 3020435 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544000 S 1557 0 1 "" NINDS_69 nsv527090 12 3110556 3125623 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703469 S 2026 0 1 "" nsv528150 12 3110695 3113053 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704697 S 2026 0 1 "" nsv832312 12 3112432 3337461 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449570 S 95 0 1 "" nsv468976 12 3115851 3125623 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544001 S 1557 0 1 "" NINDS_111 nsv468977 12 3134767 3162729 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544002 S 1557 0 1 "" 1780862226_A nsv8890 12 3174811 3178358 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20655 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18537 nsv53179 12 3177190 3178314 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71757 M 24 "" nsv468978 12 3198066 3226495 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544003 S 1557 0 1 "" NINDS_14 nsv516931 12 3224123 3226495 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv675629,nssv655025 M 2026 0 2 "" nsv526531 12 3224123 3264359 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702844 S 2026 0 1 "" nsv527091 12 3244936 3257275 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703470 S 2026 0 1 "" nsv8892 12 3260491 3263497 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23350 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18517 nsv580 12 3410281 3450455 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8988,nssv5394 M 9 2 0 "" NA12156,NA19129 nsv581 12 3477270 3519653 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8989 S 9 0 1 "" NA12156 nsv468980 12 3548512 3568100 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544004 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00976 nsv468981 12 3556024 3968769 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544005 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01312 nsv582 12 3576257 3607066 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4007 S 9 1 0 "" NA12878 nsv528921 12 3576629 3582345 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705609 S 2026 0 1 "" nsv832313 12 3668989 3886200 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449571 S 95 0 1 "" nsv832316 12 3851445 4050642 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449572 S 95 1 0 "" nsv518170 12 3914737 3918505 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695591 S 2026 0 1 "" nsv524675 12 3945121 3948346 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700646 S 2026 0 1 "" nsv583 12 3953572 3973316 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4008 S 9 1 0 "" NA12878 nsv438188 12 3957146 3958803 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470340,nssv470339,nssv470338,nssv470342 M 269 0 4 Samples from several populations that are part of the HapMap project. "" NA18547,NA18576,NA18592,NA18976 nsv584 12 4025135 4059370 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8990 S 9 1 0 "" NA12156 nsv832317 12 4185559 4305876 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449574 S 95 1 0 "" nsv442251 12 4213627 4218670 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv520791 12 4230850 4244189 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694401 S 2026 0 1 "" nsv437722 12 4261593 4267007 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467603 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19173 nsv468984 12 4269348 4282065 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544007 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01191 nsv468985 12 4293873 4343590 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544008 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00565 nsv519278 12 4312167 4345455 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696762 S 2026 0 1 "" nsv528492 12 4332422 4343590 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705097 S 2026 0 1 "" nsv523578 12 4332766 4338182 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699364 S 2026 0 1 "" nsv585 12 4384510 4429503 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8991 S 9 0 1 "" NA12156 esv33276 12 4423477 4425254 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv94727,essv95475 M 51 2 0 "" 21791,21847 nsv586 12 4466320 4499793 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1055 S 9 1 0 "" NA19240 nsv832318 12 4526060 4746098 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449575 S 95 1 0 "" dgv88n21 12 4558895 4561943 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv526830,nsv522586 M 2026 0 2 "" nsv7226 12 4583103 4606264 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1056 S 9 0 0 "" NA19240 nsv468986 12 4596329 4622059 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544009 S 1557 0 1 "" 1780854545_A nsv587 12 4615673 4649899 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8992 S 9 1 0 "" NA12156 nsv589 12 4682951 4716525 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1057 S 9 1 0 "" NA19240 nsv525579 12 4687151 4693176 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701718 S 2026 1 0 "" nsv520570 12 4800048 4824852 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697493 S 2026 0 1 "" nsv523628 12 4886654 4892699 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699426 S 2026 1 0 "" nsv525373 12 5020020 5020463 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701494 S 2026 0 1 "" nsv517406 12 5023408 5026839 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv692240,nssv666746,nssv652924,nssv684563,nssv692833,nssv683275,nssv664608,nssv693739,nssv657685,nssv685114,nssv651930,nssv667422,nssv654495,nssv691058,nssv689450,nssv662856 M 2026 0 16 "" nsv528035 12 5111233 5111646 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704567 S 2026 0 1 "" nsv520231 12 5113800 5115044 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv662040,nssv679580,nssv684640 M 2026 0 3 "" nsv590 12 5136809 5191381 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8994,nssv8993 M 9 0 1 "" NA12156 nsv832319 12 5200005 5384129 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449577,nssv1449576 M 95 2 0 "" nsv591 12 5247928 5282289 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8995 S 9 0 1 "" NA12156 nsv468988 12 5392817 6120948 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544010 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01276 nsv523152 12 5408373 5568320 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698860 S 2026 1 0 "" nsv592 12 5419550 5424265 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5395 S 9 1 0 "" NA19129 nsv524170 12 5457413 5489075 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700050 S 2026 1 0 "" nsv528886 12 5741110 5742820 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705568 S 2026 0 1 "" nsv507628 12 5868610 5874610 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620456,nssv619063,nssv617826 M 4 3 0 "" CHM,NA10860,NA15510 nsv521492 12 5879856 5905569 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698103 S 2026 0 1 "" nsv517527 12 5896615 5905569 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv687929,nssv666095,nssv666510,nssv665579,nssv652278 M 2026 0 5 "" nsv53042 12 5902701 5902701 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71620 M 24 "" nsv521996 12 5915522 5927337 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694117 S 2026 0 1 "" nsv509451 12 6072235 6165141 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623591 S 4 1 0 "" NA18994 nsv832320 12 6094393 6298383 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449578 S 95 0 1 "" nsv516183 12 6108740 6113877 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv666668,nssv689483 M 2026 0 2 "" nsv437134 12 6108740 6125686 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467015 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA12740 nsv437136 12 6108740 6134080 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467017 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA10851 nsv8893 12 6110241 6118561 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20196,nssv21598,nssv20699,nssv18280,nssv23180,nssv20240,nssv20373,nssv20685,nssv18892,nssv20837,nssv20434,nssv19734,nssv20575,nssv18799,nssv18725,nssv22710,nssv20156,nssv21187,nssv20508,nssv24052,nssv21278,nssv19322,nssv25582,nssv23408,nssv23754,nssv23449,nssv22692 M 31 27 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10847,NA10863,NA11830,NA12155,NA12802,NA18502,NA18504,NA18517,NA18537,NA18563,NA18564,NA18572,NA18853,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19144,NA19173,NA19221,NA19240 nsv438189 12 6113877 6116707 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470346,nssv470344,nssv470343,nssv470345 M 269 0 4 Samples from several populations that are part of the HapMap project. "" NA10851,NA12056,NA12740,NA12750 nsv832321 12 6120040 6220924 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449579,nssv1449580,nssv1449581 M 95 1 2 "" nsv522028 12 6134080 6141364 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694798 S 2026 0 1 "" nsv818880 12 6159369 6178784 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415690 S 112 1 0 "" NA12248 nsv52620 12 6160514 6160602 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71198 M 24 "" nsv53369 12 6270241 6270431 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71947 M 24 "" nsv53368 12 6270830 6271076 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71946 M 24 "" esv34325 12 6321851 6492610 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6980430,essv6980431,essv6980432 M 771 1 0 "" NA19173 dgv453e1 12 6324145 6534096 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv11538,essv16371,esv798 M 271 0 0 "" NA19172,NA19173 esv34390 12 6398330 6492610 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6990479,essv6980426,essv6980427 M 771 1 0 "" NA19172 essv12131 12 6403986 6506653 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19173 nsv818881 12 6404915 6450637 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416591,nssv1416592 M 112 2 0 "" NA19172,NA19173 nsv442252 12 6407756 6453667 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv8894 12 6409530 6455801 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20729 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19173 nsv525022 12 6434471 6472004 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701061 S 2026 1 0 "" nsv8895 12 6482612 6495144 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20789 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19173 nsv8896 12 6515512 6517508 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23477 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19132 nsv509452 12 6546362 6633054 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620928 S 4 1 0 "" NA15510 nsv832322 12 6555311 6745341 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449582 S 95 0 1 "" nsv832323 12 6641660 6835984 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449583 S 95 0 1 "" nsv53563 12 6702142 6702142 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv72141 M 24 "" nsv525884 12 6703365 6706312 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702085 S 2026 0 1 "" nsv524621 12 6703365 6722708 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700582 S 2026 0 1 "" nsv593 12 6756414 6801084 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8996 S 9 0 1 "" NA12156 nsv832324 12 6759724 6911730 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449585,nssv1449586 M 95 0 2 "" nsv52513 12 6777645 6777900 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71091 M 24 "" nsv516726 12 6818289 6819143 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv662011,nssv692932,nssv657250,nssv678064,nssv678046,nssv670467,nssv685869,nssv687930,nssv680013,nssv686614,nssv692959,nssv670711,nssv693490 M 2026 0 13 "" nsv526312 12 6818729 6819160 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702596 S 2026 0 1 "" nsv509453 12 6875955 6985418 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620935 S 4 1 0 "" NA15510 nsv818882 12 7172584 7193249 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415691 S 112 1 0 "" NA12248 nsv832325 12 7185271 7360779 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449587,nssv1449588 M 95 1 1 "" nsv594 12 7372997 7407364 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8997 S 9 0 1 "" NA12156 nsv595 12 7434674 7450421 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2875 S 9 1 0 "" NA18555 nsv525458 12 7514991 7523150 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701586 S 2026 0 1 "" nsv526689 12 7620700 7626398 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703023 S 2026 0 1 "" nsv468990 12 7620700 7692799 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544011 S 1557 0 1 "" 1780862093_A dgv178n27 12 7647973 7712959 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv468991,nsv468992 M 1557 0 2 "" 1780854573_A,1780862306_A nsv521149 12 7647973 7728255 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697815 S 2026 0 1 "" dgv5e196 12 7665787 7998084 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array esv2422501,esv2422200,esv2422373 M 181 3 0 "" ND01701,ND03532,ND05071 nsv521241 12 7707018 7717572 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv687491,nssv692987 M 2026 0 2 "" dgv6e196 12 7714691 7964299 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array esv2422192,esv2422336,esv2422242,esv2422371,esv2422236 M 181 5 0 "" ND01580,ND01613,ND01695,ND03710,ND05052 esv2422393 12 7726833 7878857 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161462 S 181 1 0 "" ND01566 dgv57e55 12 7744779 8007335 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv34893,esv2751112 M 771 2 0 "" BEC_53,NA12239 dgv454e1 12 7748086 8031668 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv23430,essv22626,essv564,essv6622,essv4142,essv20726,essv82 M 271 0 0 "" NA10854,NA12752,NA18555,NA18621,NA18991,NA18998 dgv455e1 12 7748086 8515254 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv15244,essv19432,essv22869,esv757 M 271 0 0 "" NA11840,NA12760,NA19094 nsv8897 12 7804782 7814267 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22721 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18504 dgv456e1 12 7809727 7971597 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv25177,essv21094 M 271 0 0 "" NA10854,NA11840 nsv7227 12 7818205 7889900 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1978,nssv1976 M 9 0 0 "" NA18555 nsv522654 12 7821438 7824902 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv706054 S 2026 0 1 "" dgv457e1 12 7836651 8031668 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv3650,essv19035 M 271 0 0 "" NA07034,NA18991 nsv596 12 7838162 7858963 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1977 S 9 1 0 "" NA18555 nsv516107 12 7844356 8039366 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv653773,nssv661776,nssv686485,nssv661013,nssv691580,nssv662270,nssv674817,nssv653447,nssv682727,nssv658734,nssv683802,nssv668403,nssv684860,nssv653593,nssv685434,nssv678317,nssv702536,nssv680505,nssv689571,nssv681685,nssv678236,nssv678257,nssv693565,nssv692276,nssv684471,nssv667893,nssv685089,nssv652549,nssv660029,nssv703024,nssv690774,nssv682571,nssv672805,nssv695915,nssv676031,nssv687810,nssv690642,nssv686199,nssv653300,nssv661650,nssv662695,nssv681033,nssv678984,nssv681869,nssv685925,nssv691722,nssv677296,nssv653480,nssv659495,nssv676774,nssv682560,nssv672439,nssv652508,nssv682515,nssv680226,nssv673668,nssv657294,nssv682764,nssv653031,nssv654173,nssv691326,nssv651932,nssv680448,nssv665432,nssv657686 M 2026 56 9 "" dgv58e55 12 7845318 8031668 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv34279,esv34438,esv34692,esv34839,esv2751113,esv34531 M 771 6 0 "" BEC_615,NA12760,NA18621,NA18991,NA18998,NA19092 nsv8898 12 7846594 7848125 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19352,nssv23436 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA18517 essv10974 12 7854479 7966952 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19092 esv2751114 12 7854479 8008336 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6989900,essv6984030 M 771 0 1 "" BEC_755 dgv179n27 12 7861988 7990569 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv469000,nsv468997,nsv469010,nsv468999 M 1557 4 0 "" HGDP00813,HGDP00929,HGDP01295,HGDP01301 nsv818883 12 7876208 7960148 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418312,nssv1418311 M 112 2 0 "" NA19092,NA19094 dgv180n27 12 7884583 8034733 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv469031,nsv469046,nsv469057,nsv469029,nsv469026,nsv469028,nsv469014,nsv469048,nsv469001,nsv469050,nsv469025,nsv469039,nsv469033,nsv469019,nsv469047,nsv469052,nsv469035,nsv469018,nsv469041,nsv469036,nsv469020,nsv469051,nsv469004,nsv469045,nsv469015,nsv469043,nsv469022,nsv469034,nsv469040,nsv469024,nsv469017,nsv469053,nsv469013,nsv469021,nsv469098,nsv469037,nsv469006,nsv469012,nsv469080,nsv469011,nsv469023,nsv469030,nsv469032,nsv469042,nsv469056,nsv469091 M 1557 46 0 "" 1780854357_A,1780854477_A,1780854485_A,1780862175_A,1780862276_A,1780862521_A,1780862577_A,1780862594_A,1782681023_A,HGDP00015,HGDP00066,HGDP00120,HGDP00151,HGDP00161,HGDP00197,HGDP00216,HGDP00259,HGDP00514,HGDP00525,HGDP00534,HGDP00630,HGDP00694,HGDP00717,HGDP00761,HGDP00897,HGDP00898,HGDP00911,HGDP00955,HGDP01018,HGDP01188,HGDP01264,HGDP01269,HGDP01289,HGDP01326,HGDP01341,HGDP01350,HGDP01352,NINDS_13,NINDS_15,NINDS_191,NINDS_205,NINDS_235,NINDS_54,NINDS_59,NINDS_78,NINDS_96 dgv181n27 12 7888157 7949190 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv469008,nsv469087 M 1557 0 2 "" 1780854039_A,HGDP00285 dgv182n27 12 7888157 7990569 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv469009,nsv469089,nsv469088,nsv469090 M 1557 0 4 "" 1780862111_A,HGDP00210,HGDP00456,HGDP00733 nsv818884 12 7888157 8014573 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418394 S 112 1 0 "" NA12239 dgv183n27 12 7888157 8017012 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv469092,nsv469044,nsv469093 M 1557 0 3 "" 1780854130_A,1780854235_A,HGDP00679 nsv442253 12 7895692 8015167 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv59e55 12 7908740 8033850 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv2751115,esv2751120,esv2751123,esv2751116,esv2751117,esv2751119 M 771 6 0 "" BEC_175,BEC_505,BEC_527,BEC_768,NA18555,SPC_129 esv2751118 12 7908740 8081473 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6987138,essv6984997,essv6984996 M 771 1 0 "" SPC_3 essv22724 12 7908745 7966952 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12239 dgv60e55 12 7908745 8025936 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv34402,esv2751121,esv2751122 M 771 0 3 "" BEC_106,BEC_558,BEC_559 dgv458e1 12 7908745 8033850 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv631,essv5860,essv12926,essv6072 M 271 0 0 "" NA18555,NA18621,NA18998,NA19094 esv2751124 12 7915629 7926410 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6984811,essv6987690 M 771 1 0 "" SPC_181 nsv469100 12 7915629 7990569 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544084 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01019 essv23467 12 7918138 7989956 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA07034 nsv53191 12 7960613 7961535 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71769 M 24 "" esv32804 12 8112120 8112663 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98768 S 51 0 1 "" 21606 dgv459e1 12 8167813 8332082 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv975,essv23786,essv5572,essv9593,essv19224,essv9785,essv14163,essv21559 M 271 0 0 "" NA10838,NA12763,NA12873,NA18529,NA18863,NA18981,NA19140,NA19141 dgv460e1 12 8167813 8472071 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv20779,essv11096,essv11235,essv13761,essv21611,essv22144,essv10618,essv19506,essv6681,essv6298,essv18903,essv17504 M 271 0 0 "" NA10857,NA12146,NA12155,NA12717,NA12762,NA12864,NA18608,NA18609,NA18855,NA19153,NA19204,NA19211 dgv461e1 12 8167813 8515254 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2489,essv2987,essv11912 M 271 0 0 "" NA18502,NA18981,NA19003 nsv8899 12 8201345 8272107 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20270,nssv23505,nssv22739,nssv20867,nssv23781,nssv18829,nssv23236,nssv20538,nssv20326,nssv20464,nssv23208,nssv18922,nssv19794,nssv24079,nssv18815,nssv20568,nssv21308,nssv21628,nssv21009,nssv18785,nssv25605,nssv22780,nssv20819,nssv23464,nssv19382 M 31 14 8 Samples from several populations that are part of the HapMap project. "" NA07029,NA10839,NA10847,NA12155,NA12740,NA18502,NA18504,NA18517,NA18552,NA18563,NA18564,NA18572,NA18853,NA18860,NA18942,NA18972,NA18975,NA19132,NA19144,NA19173,NA19221,NA19240 dgv462e1 12 8211560 8398448 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv10717,essv22703,essv19822,essv21881 M 271 0 0 "" NA06991,NA10847,NA12004,NA18508 nsv471365 12 8216417 8223909 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548080,nssv548079,nssv548077 M 3 "" dgv463e1 12 8220967 8449509 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv7050,essv12026,essv20724,essv11464,essv21915 M 271 0 0 "" NA10838,NA12752,NA18612,NA18856,NA19116 essv6083 12 8234455 8302160 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18621 essv1083 12 8234455 8332082 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18990 nsv433419 12 8237875 8322268 CNV Gain Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463300 S 9 1 0 Samples from several populations that are part of the HapMap project. "" NA19240 nsv597 12 8254378 8263752 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1979 S 9 1 0 "" NA18555 dgv464e1 12 8259480 8283630 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv22621,essv19709,essv4330 M 271 0 0 "" NA12154,NA12236,NA18564 dgv465e1 12 8259480 8333886 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv21366,essv19154,essv5944 M 271 0 0 "" NA10860,NA12812,NA18577 essv13388 12 8269208 8398448 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18872 nsv508664 12 8342143 8495958 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622642,nssv618840,nssv620033,nssv617396,nssv622639 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv8900 12 8424249 8444469 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23808,nssv23264,nssv20356,nssv21338 M 31 2 2 Samples from several populations that are part of the HapMap project. "" NA12155,NA18502,NA18552,NA18972 nsv598 12 8433944 8494779 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4009,nssv5397,nssv6487,nssv10849,nssv1060,nssv9827,nssv10900 M 9 0 7 "" NA12156,NA12878,NA15510,NA18507,NA18956,NA19129,NA19240 nsv77 12 8448532 8483138 CNV Loss Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv77 S 1 0 1 "" NA15510 nsv442631 12 8449755 8475939 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv8901 12 8454283 8458877 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23492 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18517 nsv518772 12 8507076 8558846 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696222 S 2026 1 0 "" nsv518125 12 8507076 8562541 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695543 S 2026 0 1 "" nsv600 12 8522913 8536827 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8998 S 9 0 1 "" NA12156 nsv526021 12 8554076 8562541 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702251 S 2026 0 1 "" nsv510286 12 8585842 8591842 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624102,nssv618359 M 4 0 2 "" CHM,NA18994 nsv527782 12 8648058 8648748 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704273 S 2026 1 0 "" nsv601 12 8837314 8845626 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5398 S 9 1 0 "" NA19129 nsv521922 12 8877646 8883237 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694692 S 2026 0 1 "" nsv516260 12 8901938 8904596 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv679273,nssv667141 M 2026 0 2 "" nsv442254 12 8902508 8905023 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv53517 12 8908348 8909373 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv72095 M 24 "" nsv832327 12 8973046 9137487 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449666,nssv1449589,nssv1449597,nssv1449620,nssv1449676,nssv1449674,nssv1449648,nssv1449600,nssv1449591,nssv1449647,nssv1449590,nssv1449592,nssv1449594,nssv1449593,nssv1449608,nssv1449596,nssv1449601,nssv1449607,nssv1449602,nssv1449605,nssv1449603,nssv1449604,nssv1449598,nssv1449667,nssv1449619,nssv1449609,nssv1449610,nssv1449613,nssv1449611,nssv1449612,nssv1449668,nssv1449661,nssv1449615,nssv1449614,nssv1449653,nssv1449599,nssv1449654,nssv1449652,nssv1449664,nssv1449618,nssv1449649,nssv1449665,nssv1449671,nssv1449625,nssv1449655,nssv1449663,nssv1449675,nssv1449646,nssv1449622,nssv1449621,nssv1449624,nssv1449623,nssv1449657,nssv1449650,nssv1449630,nssv1449627,nssv1449631,nssv1449626,nssv1449658,nssv1449659,nssv1449656,nssv1449645,nssv1449637,nssv1449632,nssv1449660,nssv1449669,nssv1449616,nssv1449670,nssv1449633,nssv1449636,nssv1449634,nssv1449635,nssv1449638,nssv1449639,nssv1449672,nssv1449644,nssv1449643,nssv1449641,nssv1449642 M 95 0 79 "" nsv52793 12 8974789 8976423 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71371 M 24 "" nsv521482 12 9044413 9045199 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698093 S 2026 0 1 "" nsv527404 12 9141868 9326511 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703840 S 2026 1 0 "" nsv523958 12 9194707 9440339 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699808 S 2026 0 1 "" nsv469101 12 9234853 9254198 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544085 S 1557 0 1 "" 1780862528_A dgv466e1 12 9262862 9814796 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv9757,esv607 M 271 0 0 "" NA18863 nsv8903 12 9266955 9272540 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22798,nssv21368 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA12155,NA19240 nsv7228 12 9293371 9516507 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9828,nssv5399,nssv9829,nssv6488,nssv1980 M 9 0 0 "" NA12156,NA18507,NA18555,NA19129 nsv8904 12 9359727 9361766 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23292 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18502 nsv8905 12 9433429 9439574 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20849 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19173 nsv508665 12 9437500 9493022 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622648 S 4 0 1 "" NA18994 nsv509454 12 9437500 9493022 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619531 S 4 1 0 "" NA10860 nsv8906 12 9439120 9447262 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20494,nssv21217,nssv20897,nssv21658,nssv18310,nssv19824,nssv18859,nssv20879,nssv18952,nssv20186,nssv23835,nssv23520,nssv20300,nssv20386,nssv20715 M 31 15 0 Samples from several populations that are part of the HapMap project. "" NA10839,NA11830,NA12802,NA18517,NA18537,NA18552,NA18563,NA18572,NA18853,NA18942,NA18972,NA18975,NA19007,NA19144,NA19173 dgv467e1 12 9451354 9630395 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv6115,essv7579,essv5319,essv16423,essv4371,essv24496,essv5644,essv21376 M 271 0 0 "" NA12740,NA12802,NA18532,NA18545,NA18563,NA18573,NA18579,NA19139 dgv468e1 12 9451354 9814796 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv12389,essv18936,essv10450,essv17430,essv8478,essv1253,essv10808,essv22135,essv2474,essv12484,essv8297,essv14609,essv5021,essv15254,essv12599,essv9988,essv15618,essv18587,essv8187,essv13697,essv12813,essv3854,essv18239,essv15065,essv19759,essv15785,essv6754,essv13173,essv6383,essv2685,essv2988,essv16538,essv15425,essv15557,essv9935,essv3189,essv8175,essv14366,essv4482,essv8753,essv24230,essv11024,essv11492,essv7367,essv4615,essv24980,essv23785,essv10289,essv20949,essv5239,essv9375,essv13463,essv4549,essv24672,essv13835,essv10668,essv23073,essv12672,essv22573,essv11419,essv7235,essv21044,essv8799,essv10815,essv11206,essv11159,essv16759,essv21990,essv9732,essv17199,essv12737,essv16155,essv3802,essv22811,essv2018,essv21194,essv2875,essv5489,essv16047,essv11929,essv16840,essv23606,essv20145,essv12250,essv15476 M 271 0 0 "" NA06991,NA07345,NA07348,NA10835,NA10839,NA10856,NA10857,NA11829,NA11830,NA11995,NA12004,NA12005,NA12006,NA12043,NA12057,NA12234,NA12763,NA12801,NA12812,NA18500,NA18501,NA18502,NA18505,NA18506,NA18508,NA18515,NA18516,NA18523,NA18524,NA18547,NA18552,NA18562,NA18570,NA18572,NA18576,NA18594,NA18624,NA18632,NA18853,NA18854,NA18855,NA18857,NA18871,NA18872,NA18912,NA18913,NA18914,NA18943,NA18949,NA18953,NA18967,NA18974,NA18981,NA18994,NA18995,NA18999,NA19092,NA19093,NA19094,NA19098,NA19099,NA19100,NA19101,NA19102,NA19103,NA19116,NA19119,NA19120,NA19129,NA19131,NA19137,NA19143,NA19145,NA19171,NA19173,NA19192,NA19194,NA19203,NA19204,NA19205,NA19206,NA19207,NA19210,NA19211,NA19238 nsv8907 12 9455929 9466480 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23320 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18502 nsv602 12 9500570 9639761 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5400,nssv9830,nssv6490,nssv9277,nssv10850,nssv4010 M 9 0 6 "" NA12156,NA12878,NA18507,NA18517,NA18956,NA19129 dgv469e1 12 9501978 9664499 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1319,essv23266,essv1684,essv2568,essv1050,essv3931,essv10962,essv4218,essv1299,essv965,essv7057,essv3584,essv1078,essv5011,essv208,essv20879,essv2378,essv12924,essv622,essv7682,essv96,essv10513,essv22013,essv21873,essv6533,essv3507,essv23298,essv12099,essv12108,essv21627,essv8671,essv4515,essv5695,essv20468,essv9949,essv21358,essv15176,essv18908,essv20454,essv12959,essv19702,essv5861,essv22798,essv15951,essv7456,essv13292,essv14898,essv6925,essv3902,essv7517,essv11058,essv13270,essv6850,essv21085,essv4544,essv730,essv8908,essv6203,essv8978,essv8998,essv6417,essv17865,essv8514,essv24951,essv2923,essv5834,essv21650,essv1548,essv11401,essv19072,essv25030,essv6463,essv20531,essv13811,essv17686,essv20680,essv16621,essv8510,essv5895,essv8396,essv14250,essv19138,essv6048,essv6799,essv2962,essv17214,essv2158,essv22246,essv7937,essv6434,essv18547,essv9554,essv11311,essv15,essv23761,essv3260,essv14798,essv13390,essv17358,essv19334,essv8686,essv3827,essv20823,essv14218,essv13506,essv2404,essv1992,essv8057,essv3688,essv3316,essv926,essv13945,essv503,essv23305,essv3437,essv2109,essv6500,essv1650,essv2752,essv18784,essv19855,essv1714,essv5967,essv22687,essv2701,essv19305 M 271 0 0 "" NA06991,NA06994,NA07022,NA07345,NA07348,NA10835,NA10854,NA10855,NA10857,NA10860,NA11830,NA11992,NA11993,NA11994,NA11995,NA12004,NA12006,NA12145,NA12234,NA12236,NA12249,NA12264,NA12707,NA12717,NA12753,NA12761,NA12801,NA12802,NA12812,NA12815,NA12872,NA12891,NA18515,NA18517,NA18523,NA18524,NA18532,NA18545,NA18550,NA18552,NA18555,NA18558,NA18563,NA18566,NA18571,NA18572,NA18576,NA18582,NA18592,NA18594,NA18603,NA18608,NA18609,NA18611,NA18612,NA18620,NA18623,NA18637,NA18853,NA18854,NA18857,NA18861,NA18863,NA18870,NA18872,NA18912,NA18913,NA18914,NA18940,NA18942,NA18943,NA18944,NA18945,NA18948,NA18949,NA18952,NA18953,NA18956,NA18959,NA18960,NA18961,NA18965,NA18967,NA18968,NA18970,NA18972,NA18973,NA18974,NA18975,NA18976,NA18978,NA18980,NA18981,NA18987,NA18990,NA18992,NA18994,NA18995,NA18998,NA18999,NA19005,NA19007,NA19012,NA19092,NA19093,NA19094,NA19099,NA19100,NA19101,NA19102,NA19103,NA19129,NA19138,NA19139,NA19143,NA19160,NA19171,NA19173,NA19192,NA19194,NA19201,NA19202,NA19204,NA19208,NA19209,NA19210 dgv470e1 12 9502064 9604705 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv5670,essv25192,essv19339 M 271 0 0 "" NA06985,NA11840,NA18605 dgv471e1 12 9505288 9702031 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv13231,essv6555,essv756,essv8584,essv11391,essv7664 M 271 0 0 "" NA18624,NA18632,NA19003,NA19127,NA19130,NA19131 nsv53753 12 9511898 9511967 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv72331 M 24 "" nsv511012 12 9516760 9635419 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618621 S 4 0 0 "" CHM nsv8908 12 9523968 9626720 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22856,nssv18982,nssv20524,nssv20957,nssv18340,nssv20909,nssv18889,nssv20446,nssv21039,nssv22827,nssv23406,nssv18949,nssv23862,nssv18521,nssv18919,nssv23548,nssv21099,nssv21688,nssv18370,nssv20216,nssv23533,nssv21247,nssv20805,nssv20605,nssv20775,nssv20927,nssv23576,nssv20330,nssv20939,nssv23348,nssv19854,nssv20635,nssv18551 M 31 21 0 Samples from several populations that are part of the HapMap project. "" NA10839,NA11830,NA12740,NA12802,NA12872,NA18502,NA18517,NA18537,NA18552,NA18563,NA18572,NA18853,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19144,NA19173,NA19240 esv33284 12 9524065 9604661 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97509,essv93950,essv93904,essv93864,essv100661,essv100748,essv100806,essv96816,essv101078,essv101051,essv100980,essv94749,essv94765,essv94792,essv101380,essv101301,essv95442,essv95458,essv95527,essv93117,essv93049,essv93004,essv96108,essv96199,essv96681,essv96632,essv96599,essv97256,essv97118,essv97147,essv99913,essv93348,essv94932,essv94963,essv95048,essv97719,essv97767 M 51 3 13 "" 21616,21634,21656,21659,21693,21791,21805,21847,21863,22007,22011,22075,22086,22170,22231,22278 nsv442632 12 9524645 9619559 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv472e1 12 9532468 9604705 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv4931,essv19873,essv21491 M 271 0 0 "" NA11881,NA12003,NA18537 dgv473e1 12 9532468 9634923 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv14838,essv10709,essv21935,essv10182,essv25122,essv24636,essv17398,essv12068,essv11328,essv10613,essv22738,essv15925,essv12046,essv13218,essv12018,essv9572,essv12865,essv24192,essv14654,essv20838,essv2756,essv23115,essv19485,essv18532,essv13311,essv9291,essv11597,essv7959,essv6113,essv11475,essv21912,essv24553,essv16369,essv21748,essv24348,essv23693,essv15439,essv5875,essv9263,essv19027,essv5078,essv13337,essv8017,essv17989,essv9866,essv12438,essv7463,essv7980,essv13976,essv12147,essv7500,essv7906,essv16172,essv19127 M 271 0 0 "" NA07034,NA07056,NA10838,NA10839,NA10846,NA10856,NA10861,NA11829,NA11831,NA12005,NA12043,NA12044,NA12057,NA12239,NA12740,NA12750,NA12763,NA18500,NA18501,NA18502,NA18505,NA18506,NA18507,NA18508,NA18516,NA18561,NA18562,NA18570,NA18573,NA18633,NA18852,NA18855,NA18856,NA18871,NA19000,NA19098,NA19116,NA19119,NA19120,NA19128,NA19137,NA19141,NA19144,NA19145,NA19152,NA19172,NA19203,NA19205,NA19206,NA19207,NA19211,NA19238,NA19239,NA19240 nsv433519 12 9607393 9616735 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463400 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA12878 nsv516258 12 9628505 9632767 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv667119,nssv659293 M 2026 0 2 "" essv5635 12 9631521 9702031 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18579 essv6453 12 9634553 9664499 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18592 nsv8909 12 9646154 9649961 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20835,nssv20987,nssv20246,nssv23889,nssv20554 M 31 5 0 Samples from several populations that are part of the HapMap project. "" NA10839,NA18537,NA18563,NA18972,NA19007 nsv603 12 9649176 9681330 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5401 S 9 1 0 "" NA19129 dgv474e1 12 9747225 9779820 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv14824,essv13409 M 271 0 0 "" NA18870,NA18872 nsv442255 12 9753345 9766191 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv8910 12 9757260 9763776 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25628 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19221 nsv8911 12 9787167 9788958 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23604 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18517 nsv8912 12 9814952 9817587 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21277 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA11830 nsv523050 12 9923147 10015640 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698733 S 2026 0 1 "" nsv525593 12 10012614 10047913 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701735 S 2026 0 1 "" nsv604 12 10035306 10051707 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8999 S 9 0 1 "" NA12156 nsv524870 12 10100978 10111152 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700875 S 2026 1 0 "" nsv520713 12 10253491 10255629 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697570 S 2026 0 1 "" nsv527123 12 10255437 10255629 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703506 S 2026 0 1 "" nsv832328 12 10289338 10511710 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449677 S 95 1 0 "" nsv605 12 10339905 10385475 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6491 S 9 0 1 "" NA12156 nsv8914 12 10423567 10553943 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23632,nssv25651,nssv19012,nssv18845,nssv20598,nssv23916,nssv20276 M 31 0 7 Samples from several populations that are part of the HapMap project. "" NA10847,NA18517,NA18564,NA18942,NA18972,NA19007,NA19221 nsv606 12 10443899 10504166 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5402,nssv1981,nssv9278 M 9 0 3 "" NA18517,NA18555,NA19129 nsv521062 12 10452224 10496212 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697763 S 2026 1 0 "" esv32543 12 10464047 10490286 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv95197,essv101405,essv95297,essv97357,essv95852,essv94629,essv93606,essv93474,essv96511,essv100546,essv98471 M 51 0 11 "" 21721,21805,21872,21879,21911,21932,21972,22128,22261,22298,22352 nsv442633 12 10474634 10487386 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv523828 12 10566562 10589522 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699659 S 2026 0 1 "" nsv832329 12 10568361 10737213 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449678 S 95 1 0 "" nsv52694 12 10612499 10614216 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71272 M 24 "" nsv516351 12 10650756 10655312 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv688292,nssv691668,nssv690698,nssv688590,nssv658784,nssv663827,nssv693716,nssv657293,nssv677833,nssv652820,nssv680225,nssv690995,nssv658799,nssv682367,nssv658851,nssv681480,nssv655424,nssv683000,nssv662448,nssv695668,nssv680447,nssv674701 M 2026 0 22 "" nsv528941 12 10658065 10658147 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705632 S 2026 0 1 "" nsv607 12 10668134 10712802 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9001 S 9 0 1 "" NA12156 nsv527604 12 10711585 10712043 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704066 S 2026 0 1 "" dgv475e1 12 10860887 11606188 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv8785,essv8220,essv24391,essv17476,essv13721,essv13596,essv11934,essv12829,essv12409,essv10301,essv17035,essv11697,essv10518,essv23774,essv23332,essv13071,esv863,essv8090,essv21383,essv9675,essv15874,essv21330,essv17750,essv22215 M 271 0 0 "" NA10831,NA12044,NA12707,NA12740,NA12750,NA12762,NA12763,NA12878,NA18502,NA18506,NA18508,NA18852,NA18913,NA19116,NA19119,NA19120,NA19127,NA19144,NA19154,NA19206,NA19223,NA19238,NA19240 essv11102 12 10961112 11122296 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19211 dgv476e1 12 10961112 11436808 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv19008,essv9218,essv16536,essv19583,essv17152,essv16198 M 271 0 0 "" NA12005,NA12864,NA19128,NA19161,NA19171,NA19210 nsv832330 12 10968945 11098224 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449680,nssv1449679,nssv1449681 M 95 3 0 "" nsv8915 12 11037861 11039856 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23660,nssv19442 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA18517 nsv516631 12 11045061 11047313 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv669704,nssv673046 M 2026 0 2 "" nsv8916 12 11053325 11056361 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21129 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA12740 nsv8917 12 11059499 11185014 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20390,nssv22809,nssv23434,nssv20628,nssv21337,nssv20476,nssv24106,nssv21307,nssv19884,nssv18460,nssv21159,nssv21718,nssv25673,nssv22838,nssv18581,nssv19472,nssv18400,nssv21458,nssv20226,nssv23745,nssv25695,nssv23561,nssv22885,nssv20584,nssv23589,nssv20614,nssv23718,nssv20969,nssv20450,nssv20360,nssv23617,nssv19502 M 31 0 21 Samples from several populations that are part of the HapMap project. "" NA07029,NA10839,NA10863,NA11830,NA12155,NA12740,NA12802,NA12872,NA18502,NA18504,NA18517,NA18552,NA18564,NA18853,NA18860,NA18975,NA19132,NA19144,NA19173,NA19221,NA19240 esv33303 12 11109590 11112629 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101461,essv97859,essv95328 M 51 3 0 "" 21603,21837,21872 nsv442634 12 11113633 11132799 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv511013 12 11122638 11178984 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621614,nssv624332,nssv622389 M 4 0 0 "" NA10860,NA15510,NA18994 nsv471366 12 11135153 11136179 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548082,nssv548081,nssv548083 M 3 "" nsv52653 12 11179371 11179423 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71231 M 24 "" nsv8918 12 11228967 11231144 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21488 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA12155 dgv477e1 12 11248302 11436808 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv10992,essv6357 M 271 0 0 "" NA18609,NA19143 dgv478e1 12 11248302 11606188 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv11995,essv22136,essv6911,essv18861,essv19436 M 271 0 0 "" NA10857,NA11840,NA12751,NA18517,NA18605 nsv8919 12 11316630 11325402 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23645,nssv21189,nssv23462 M 31 0 3 Samples from several populations that are part of the HapMap project. "" NA12740,NA18502,NA19132 nsv509455 12 11324349 11417832 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623615 S 4 1 0 "" NA18994 nsv818885 12 11350073 11356963 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416484,nssv1416485 M 112 2 0 "" NA18515,NA18516 nsv516262 12 11350073 11466837 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv659188,nssv662979,nssv692644,nssv679270,nssv686702,nssv663665,nssv674331,nssv682342,nssv681249,nssv662527,nssv703074,nssv661292,nssv666778,nssv688990,nssv667244,nssv664726,nssv683801,nssv693489,nssv689034,nssv664277,nssv689329,nssv656915,nssv693007,nssv669297,nssv654587,nssv665431,nssv676925,nssv676411,nssv676605,nssv696568,nssv685034,nssv693775,nssv662639,nssv652577,nssv671699,nssv653092,nssv654564,nssv664061,nssv690597,nssv672699,nssv658469,nssv670852,nssv668895,nssv692530,nssv669705,nssv674655,nssv659770,nssv671222,nssv675345,nssv682978,nssv677467,nssv670341,nssv691364,nssv692624,nssv676253,nssv652441,nssv682977,nssv656087,nssv675498,nssv659936,nssv655786,nssv667517,nssv680337,nssv656323,nssv674360,nssv658993,nssv675828,nssv678748,nssv651669,nssv653659,nssv676957,nssv679073,nssv693056,nssv676001,nssv691365,nssv674900,nssv654493,nssv663393,nssv669640,nssv677390,nssv663775,nssv654620,nssv684590,nssv683705,nssv666072,nssv669792,nssv651770,nssv669470,nssv693543,nssv652425,nssv680696,nssv673961,nssv692577,nssv683014,nssv658246,nssv652973,nssv664137,nssv657577,nssv689063,nssv676572,nssv693093,nssv689745,nssv670604,nssv661872,nssv686672,nssv674271,nssv682942,nssv680208,nssv686526,nssv692931,nssv683317,nssv669188,nssv653018,nssv682167,nssv664470,nssv680625,nssv683583,nssv671487,nssv665988,nssv693758,nssv682415,nssv689257,nssv674771,nssv657411,nssv667393,nssv668581,nssv683334,nssv685238,nssv659657,nssv689393,nssv657068,nssv679123,nssv689795,nssv683557,nssv677230,nssv690439,nssv693255,nssv669335,nssv667081,nssv667139,nssv676772,nssv667790,nssv680876,nssv665091,nssv657932,nssv677638,nssv685576,nssv656668,nssv692025,nssv684903,nssv670305,nssv689392,nssv684966,nssv670551,nssv668346,nssv665218,nssv682956,nssv661363,nssv681683,nssv686759,nssv658090,nssv680908,nssv659977,nssv676045,nssv678785,nssv680465,nssv655708,nssv656390,nssv653994,nssv689952,nssv686484,nssv691012,nssv675722,nssv668005,nssv669722,nssv668876,nssv675628,nssv673047,nssv685755,nssv677809,nssv683942,nssv669496,nssv663066,nssv656539,nssv664250 M 2026 36 149 "" nsv8920 12 11350198 11385362 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23490,nssv21219 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA12740,NA18502 dgv184n27 12 11372324 11466837 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv469102,nsv469103 M 1557 0 2 "" 1780862224_A,NINDS_69 nsv608 12 11374350 11458911 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6492,nssv9279,nssv1061,nssv4011 M 9 0 4 "" NA12156,NA12878,NA18517,NA19240 nsv438190 12 11375250 11435555 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470365,nssv470349,nssv470356,nssv470358,nssv470348,nssv470355,nssv470360,nssv470351,nssv470361,nssv470362,nssv470357,nssv470350,nssv470364,nssv470366,nssv470353,nssv470347,nssv470359,nssv470354 M 269 0 15 Samples from several populations that are part of the HapMap project. "" NA10831,NA10847,NA12156,NA12239,NA12740,NA12753,NA12762,NA18502,NA18506,NA18508,NA18515,NA18522,NA19119,NA19120,NA19238 nsv8921 12 11392505 11466457 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23799,nssv25747,nssv20480,nssv20865,nssv18905,nssv21518,nssv21309,nssv21249,nssv20644,nssv19914,nssv18979,nssv20433,nssv19532,nssv20665,nssv22914,nssv21748,nssv21279,nssv19042,nssv21367,nssv23518,nssv23772,nssv20306,nssv23673,nssv22867,nssv23943,nssv21808,nssv18875,nssv24132,nssv20999,nssv18611,nssv20256 M 31 1 25 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10847,NA10863,NA11830,NA12155,NA12740,NA12872,NA18502,NA18504,NA18517,NA18537,NA18572,NA18853,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19144,NA19173,NA19221,NA19240 dgv35n17 12 11393123 11448926 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437139,nsv437725,nsv437138,nsv437723 M 60 0 4 "" NA10831,NA12753,NA18506,NA19120 nsv437137 12 11395597 11421894 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467018 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA10847 nsv482164 12 11396024 11399791 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558525 S 1 1 0 "" KB1 esv33471 12 11400180 11444750 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101587,essv97598,essv97544,essv93896,essv96870,essv96874,essv95141,essv93974,essv97874,essv95522,essv101783,essv99130,essv96675,essv97245,essv98649,essv93407,essv92511,essv98129,essv100268,essv100583,essv96345 M 51 10 9 "" 21603,21616,21634,21659,21721,21802,21837,21847,21909,21938,22011,22075,22085,22170,22233,22259,22286,22298,22371 nsv442635 12 11403759 11434653 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" essv24169 12 11404579 11444635 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12751 dgv185n27 12 11411688 11434269 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv469106,nsv469108,nsv469104,nsv469111,nsv469109,nsv469107,nsv469110 M 1557 0 7 "" 1780862384_A,HGDP00517,HGDP00608,HGDP00931,HGDP00991,HGDP01036,HGDP01271 nsv818886 12 11411688 11434269 CNV Gain+Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416488,nssv1415995,nssv1416950,nssv1416487,nssv1415591,nssv1415782,nssv1415592,nssv1418191,nssv1418099,nssv1415781,nssv1418190,nssv1418193,nssv1416939,nssv1417582,nssv1415993 M 112 6 9 "" NA10830,NA10857,NA11882,NA12044,NA12236,NA12740,NA12751,NA12865,NA12874,NA18515,NA18517,NA18972,NA19143,NA19144,NA19145 nsv818887 12 11411688 11438799 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417395 S 112 1 0 "" NA18949 nsv818890 12 11411688 11448926 CNV Gain+Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416268,nssv1416486,nssv1416267,nssv1418395,nssv1418396,nssv1415992,nssv1415862,nssv1416385 M 112 4 4 "" NA10847,NA10851,NA11992,NA12057,NA12239,NA12750,NA18516,NA18857 nsv437140 12 11421894 11448926 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467021 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA10847 nsv818891 12 11433177 11448926 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417477 S 112 1 0 "" NA18960 nsv482165 12 11435743 11439765 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558526 S 1 1 0 "" KB1 nsv818892 12 11438799 11448926 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415996 S 112 0 1 "" NA12740 nsv52822 12 11450508 11459563 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71400 M 24 "" nsv469112 12 11466837 11602957 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544096 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00511 nsv609 12 11695453 11730241 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1062 S 9 1 0 "" NA19240 nsv611 12 11785422 11800101 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1063 S 9 1 0 "" NA19240 dgv186n27 12 11804627 11822526 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv469113,nsv469114 M 1557 0 2 "" 1780862252_A,HGDP00890 nsv832331 12 11816362 12005718 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449682 S 95 0 1 "" nsv516796 12 11905252 11919012 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv682430,nssv691285,nssv686462,nssv656564,nssv665743,nssv658294,nssv681887,nssv675070,nssv682080,nssv692625,nssv659048,nssv655626,nssv664891,nssv687427,nssv656724,nssv670447,nssv666493,nssv660468,nssv682780,nssv682016,nssv677337,nssv658041,nssv673444,nssv690253,nssv653459,nssv686082,nssv670361,nssv655538 M 2026 0 28 "" nsv53245 12 11978573 11986733 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71823 M 24 "" nsv438191 12 12031052 12037271 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470372,nssv470367,nssv470368,nssv470371,nssv470369,nssv470370 M 269 0 6 Samples from several populations that are part of the HapMap project. "" NA18862,NA18863,NA19143,NA19145,NA19207,NA19208 nsv527741 12 12084254 12087236 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704226 S 2026 0 1 "" nsv515729 12 12144858 12145743 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv655357,nssv673557,nssv668896,nssv676143,nssv689376,nssv655276,nssv677017,nssv656835,nssv674048,nssv664607,nssv674231,nssv676046,nssv666073,nssv662902 M 2026 0 14 "" nsv528912 12 12144858 12157308 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705597 S 2026 0 1 "" nsv529005 12 12146023 12304062 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705712 S 2026 0 1 "" nsv832332 12 12235294 12376233 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449683 S 95 0 1 "" nsv818893 12 12406451 12433136 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416386 S 112 0 1 "" NA18855 dgv15n64 12 12421985 12435533 CNV Loss Wang_et_al_2007 17921354 SNP_array nsv818894,nsv818895 M 112 0 5 "" NA19116,NA19120,NA19141,NA19159,NA19161 nsv437141 12 12421985 12435533 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467022 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA12864 dgv187n27 12 12424251 12433136 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv469115,nsv469117,nsv469118 M 1557 0 3 "" 1780854467_A,HGDP00524,HGDP00675 nsv517152 12 12424251 12438912 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv663795,nssv663754,nssv688991,nssv682979,nssv656608,nssv680812,nssv690654,nssv688858,nssv656050,nssv679942,nssv654314,nssv685239,nssv655325,nssv687067,nssv675224,nssv681032,nssv673821,nssv664941,nssv680877,nssv676293,nssv667082,nssv673445,nssv687688,nssv704135,nssv686564,nssv677787,nssv653744,nssv661488,nssv653672,nssv653653,nssv654422,nssv675808,nssv665861,nssv679271,nssv654374,nssv691101,nssv655498,nssv659771,nssv653239,nssv655112,nssv687515,nssv678489,nssv673919,nssv663847,nssv663919,nssv685867,nssv693185,nssv657682,nssv675051,nssv655466,nssv678315,nssv661709,nssv652304,nssv666233,nssv676373,nssv689623,nssv679466,nssv682483,nssv676171,nssv673527 M 2026 0 60 "" nsv442636 12 12428764 12433138 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv479e1 12 12511921 12674391 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv9240,essv15050,esv23 M 271 0 0 "" NA19128,NA19129 nsv523366 12 12556513 12570391 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699115 S 2026 1 0 "" esv33583 12 12557043 12570375 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97478 S 51 0 1 "" 21616 nsv523022 12 12564818 12579448 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698701 S 2026 0 1 "" nsv8922 12 12605559 12607734 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21339,nssv20658,nssv22896,nssv23826,nssv20463,nssv19562 M 31 6 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA12740,NA18504,NA18517,NA18564 nsv53247 12 12632777 12642205 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71825 M 24 "" nsv522482 12 12637852 12644945 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705849 S 2026 0 1 "" nsv612 12 12676068 12703221 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4012,nssv10851 M 9 2 0 "" NA12878,NA18956 nsv509456 12 12689295 12726039 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620949,nssv619542,nssv623620,nssv618090 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 dgv89n21 12 12701921 12721304 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv528913,nsv522656 M 2026 2 0 "" nsv53843 12 12794588 12798403 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv72421 M 24 "" nsv527423 12 12900127 12905526 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703861 S 2026 0 1 "" nsv832333 12 12941004 13152331 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449685 S 95 1 0 "" nsv520173 12 12974404 13016204 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697262 S 2026 0 1 "" nsv52858 12 13090355 13090458 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71436 M 24 "" nsv613 12 13205254 13238872 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9002,nssv4013 M 9 2 0 "" NA12156,NA12878 nsv614 12 13318260 13363133 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9003 S 9 0 1 "" NA12156 nsv528081 12 13377872 13377930 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704617 S 2026 0 1 "" nsv522848 12 13396763 13408841 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698501 S 2026 0 1 "" nsv518481 12 13404007 13405256 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695920 S 2026 0 1 "" nsv508666 12 13418770 13451305 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618846,nssv620038,nssv617397 M 4 0 3 "" CHM,NA10860,NA15510 nsv78 12 13429399 13466004 CNV Loss Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv78 S 1 0 1 "" NA15510 esv33935 12 13431565 13448864 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100712,essv99881 M 51 2 0 "" 21656,22086 nsv615 12 13433124 13448180 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6493,nssv5403 M 9 0 2 "" NA12156,NA19129 esv33553 12 13470992 13473801 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100727,essv100094 M 51 2 0 "" 21656,22086 esv33788 12 13481216 13481912 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98102 S 51 0 1 "" 22259 nsv518482 12 13766056 13769155 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695921 S 2026 0 1 "" nsv524950 12 13899773 13901181 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700969 S 2026 0 1 "" nsv832334 12 13960000 14209787 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449686 S 95 1 0 "" nsv616 12 14070838 14100025 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5404 S 9 1 0 "" NA19129 nsv528068 12 14161348 14426818 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704604 S 2026 1 0 "" nsv617 12 14280745 14325521 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9004 S 9 0 1 "" NA12156 nsv832335 12 14300155 14498015 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449687 S 95 0 1 "" dgv90n21 12 14312379 14319385 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv526448,nsv516257 M 2026 0 3 "" nsv469119 12 14513269 14579911 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544103 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01188 nsv618 12 14564480 14592575 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9006 S 9 0 1 "" NA12156 nsv528779 12 14735102 14776905 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705445 S 2026 0 1 "" nsv519851 12 14812901 14813007 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv676144,nssv659082,nssv680186 M 2026 0 3 "" nsv53585 12 14836654 14836775 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv72163 M 24 "" nsv469120 12 14966469 14992702 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544104 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01090 nsv510287 12 15033366 15039366 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624114,nssv618360 M 4 0 2 "" CHM,NA18994 nsv619 12 15211958 15244720 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4014 S 9 1 0 "" NA12878 nsv620 12 15253027 15281147 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10852 S 9 1 0 "" NA18956 esv33461 12 15323654 15398874 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98577 S 51 1 0 "" 22085 nsv622 12 15425617 15477411 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5406,nssv9280 M 9 0 2 "" NA18517,NA19129 nsv442257 12 15459186 15464906 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv517475 12 15461346 15465349 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv672889,nssv686926,nssv652132,nssv670605,nssv687287,nssv670416,nssv670116,nssv654315,nssv660732,nssv670229,nssv662355,nssv663122,nssv698817,nssv662192,nssv666412,nssv688440,nssv656697,nssv666550,nssv654722,nssv668007,nssv668582,nssv662074,nssv690933,nssv667394,nssv659772,nssv685088,nssv680479,nssv693956,nssv692532,nssv671391,nssv677231,nssv660585,nssv656540,nssv671288,nssv688992,nssv672804,nssv692704,nssv659979,nssv685414 M 2026 0 39 "" nsv469121 12 15583166 15623011 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544105 S 1557 0 1 "" 1798860192_A nsv623 12 15861352 15869981 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9007 S 9 0 1 "" NA12156 nsv510288 12 15901646 15907646 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618361,nssv621373,nssv622175,nssv624115 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv832336 12 16131300 16321671 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449688 S 95 1 0 "" dgv480e1 12 16156359 16337645 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv7203,esv263 M 271 0 0 "" NA18547 nsv527670 12 16168702 16219962 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704145 S 2026 0 1 "" nsv52662 12 16301514 16303933 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71240 M 24 "" nsv832338 12 16363501 16531364 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449689 S 95 1 0 "" nsv523348 12 16384311 16385171 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699097 S 2026 1 0 "" nsv821670 12 16449421 16465824 CNV Loss Sebat_et_al_2004 15273396 ROMA Custom Nimblegen photoprint 85000 probe ROMA oligo array nssv1421244 S 31 0 1 "" nsv832339 12 16461006 16631584 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449690 S 95 1 0 "" nsv624 12 16804881 16849488 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9008 S 9 0 1 "" NA12156 nsv507629 12 17084870 17090870 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619065 S 4 1 0 "" NA10860 dgv20n68 12 17109168 17316056 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH nsv832341,nsv832340 M 95 11 0 "" nsv442258 12 17481711 17491817 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv517025 12 17507735 17508378 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv653635,nssv655962,nssv680534,nssv666363,nssv664362,nssv689852,nssv671014,nssv668402,nssv665092,nssv689141,nssv654281,nssv655167,nssv660053,nssv675810,nssv662879,nssv659916,nssv673291,nssv678685,nssv654253,nssv679293,nssv690951,nssv661221,nssv686131,nssv683915,nssv676773,nssv672130,nssv689828 M 2026 0 27 "" nsv524469 12 17507735 17512871 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700406 S 2026 0 1 "" nsv507630 12 17597794 17603794 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620484 S 4 1 0 "" NA15510 nsv832342 12 17693010 17816827 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449703 S 95 0 1 "" nsv7229 12 17783418 17943734 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9832,nssv1982,nssv6494,nssv1984,nssv1065,nssv5408,nssv10853,nssv9281,nssv10854,nssv9282,nssv10901,nssv1064,nssv4015,nssv9831,nssv5407 M 9 0 0 "" NA12156,NA12878,NA15510,NA18507,NA18517,NA18555,NA18956,NA19129,NA19240 nsv469123 12 17795456 17834874 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544106 S 1557 0 1 "" 1780854341_A nsv80 12 17801435 17883572 OTHER Inversion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv80 S 1 0 0 "" NA15510 nsv511014 12 17807326 17936480 OTHER Inversion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622392,nssv621617,nssv624334,nssv618613 M 4 0 0 "" CHM,NA10860,NA15510,NA18994 nsv518096 12 17818869 17834874 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695509 S 2026 0 1 "" nsv8923 12 17847427 17858036 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18641 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA12872 nsv442259 12 17853447 17856104 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv625 12 18118329 18151619 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1985 S 9 1 0 "" NA18555 nsv832343 12 18170747 18351431 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449704 S 95 1 0 "" nsv832344 12 18182476 18397254 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449705 S 95 0 1 "" nsv626 12 18234281 18266370 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9009 S 9 0 1 "" NA12156 nsv527221 12 18252910 18253289 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703621 S 2026 0 1 "" nsv524175 12 18252910 18293752 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700056 S 2026 1 0 "" nsv437726 12 18270750 18287445 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467607 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18863 nsv8925 12 18273452 18284670 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25769 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19221 nsv627 12 18364027 18380447 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9010 S 9 0 1 "" NA12156 nsv438194 12 18371121 18458285 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470376,nssv470378,nssv470373,nssv470377,nssv470375 M 269 0 4 Samples from several populations that are part of the HapMap project. "" NA19137,NA19139,NA19159,NA19161 nsv8926 12 18435370 18455219 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19072 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18942 nsv437727 12 18449443 18467071 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467608 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19139 nsv437728 12 18452664 18459995 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467609 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19161 nsv520574 12 18670526 18672216 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697498 S 2026 0 1 "" nsv521707 12 18675030 18675519 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698331 S 2026 0 1 "" nsv628 12 18677846 18710561 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5409 S 9 1 0 "" NA19129 nsv629 12 18839663 18873429 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2876 S 9 1 0 "" NA18555 esv2422206 12 18844289 19455628 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161491 S 181 1 0 "" ND03704 nsv832345 12 18877361 19060813 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449712,nssv1449711,nssv1449708,nssv1449707,nssv1449710,nssv1449709,nssv1449718,nssv1449714,nssv1449713,nssv1449716,nssv1449715 M 95 0 11 "" nsv469129 12 18979898 19064774 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544108 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00011 nsv52983 12 19030715 19030800 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71561 M 24 "" nsv509458 12 19126043 19161252 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623625 S 4 1 0 "" NA18994 esv2422261 12 19153698 19397638 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161295 S 181 1 0 "" ND03970 esv2422498 12 19222190 19326762 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161313 S 181 1 0 "" ND01944 nsv516362 12 19254445 19482075 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv657038,nssv652831,nssv698280,nssv669090,nssv652010,nssv693870,nssv656916,nssv689796,nssv660012,nssv690561,nssv689035,nssv671767,nssv705663,nssv664802,nssv695181,nssv677444,nssv686416,nssv668242 M 2026 15 3 "" esv33101 12 19262414 19704045 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99892 S 51 1 0 "" 22086 nsv469131 12 19321899 19431361 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544109 S 1557 1 0 "" 1780862015_A dgv188n27 12 19360345 19477127 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv469145,nsv469155,nsv469140,nsv469136,nsv469156,nsv469142,nsv469137,nsv469141,nsv469144,nsv469139,nsv469143 M 1557 11 0 "" 1780854202_A,1780854219_A,1780862111_A,1780862373_A,1782681091_A,1798860210_A,HGDP01279,HGDP01385,NINDS_18,NINDS_181,NINDS_45 nsv832346 12 19388150 19619022 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449719 S 95 0 1 "" nsv516783 12 19532082 19535793 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv656630,nssv670833 M 2026 0 2 "" nsv524620 12 19574987 19725418 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700581 S 2026 0 1 "" nsv630 12 19576192 19621265 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9011 S 9 0 1 "" NA12156 nsv507631 12 19825804 19831804 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617827,nssv623100 M 4 2 0 "" CHM,NA18994 nsv832347 12 19938176 20116308 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449720 S 95 0 1 "" nsv631 12 19989005 20024029 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1066 S 9 1 0 "" NA19240 nsv519505 12 20228452 20230208 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv677445,nssv656445,nssv680317,nssv697407 M 2026 0 4 "" nsv527363 12 20246053 20246280 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703794 S 2026 0 1 "" nsv469158 12 20657826 20675028 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544123 S 1557 0 1 "" 1780862001_A nsv634 12 20724486 20736595 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1986 S 9 1 0 "" NA18555 nsv635 12 20739727 20742153 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9833 S 9 1 0 "" NA18507 nsv523367 12 20754206 20754840 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699116 S 2026 0 1 "" dgv481e1 12 20833482 21009087 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv6684,essv18190,essv20216,essv2083,essv11628,essv20415,essv17481,esv342,essv23025,essv23952,essv9144,essv18293,essv18711,essv17917,essv23421 M 271 0 0 "" NA10830,NA10846,NA10854,NA12003,NA12057,NA12144,NA12762,NA12812,NA12814,NA12874,NA18608,NA18860,NA18949,NA19154 esv2750761 12 20857414 20858401 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100006 S 51 0 1 "" 22086 dgv4e24 12 20859885 20860090 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH esv2750541,esv2750640,esv2750767,esv2750775 M 51 0 4 "" 21817,21841,22352,22394 nsv509459 12 20876503 20922577 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623626 S 4 1 0 "" NA18994 nsv515735 12 20901315 21311979 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv690340,nssv661924,nssv657684,nssv702776,nssv686379,nssv655605,nssv701692,nssv664627 M 2026 1 7 "" nsv8927 12 20920993 20922216 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20336 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19007 nsv8928 12 20921878 20926336 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25791 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19221 nsv636 12 20933406 20965923 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10855 S 9 1 0 "" NA18956 nsv438195 12 20959604 21054866 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470380,nssv470381,nssv470379 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA18594,NA19007 nsv8929 12 21007080 21038983 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23546 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18502 nsv469159 12 21015638 21296099 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544124 S 1557 0 1 "" 1780862306_A nsv469161 12 21398969 21446958 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544126 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00090 esv2750499 12 21403585 21414034 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv95676 S 51 1 0 "" 21841 nsv519603 12 21417739 21475976 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv689717,nssv694851,nssv685063,nssv686273,nssv657040,nssv681212,nssv684207,nssv696927,nssv690934,nssv675430,nssv679557,nssv658295,nssv685577,nssv657859,nssv679352,nssv703997,nssv693871,nssv688022,nssv688305,nssv689968,nssv679690 M 2026 2 19 "" nsv469162 12 21423367 21459318 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544127 S 1557 0 1 "" NINDS_125 nsv526789 12 21446958 21482055 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703141 S 2026 0 1 "" nsv469163 12 21470347 21483624 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544128 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01167 nsv528556 12 21556146 21571630 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705171 S 2026 1 0 "" nsv832349 12 21640360 21821962 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449722,nssv1449721,nssv1449725,nssv1449723,nssv1449724 M 95 5 0 "" nsv637 12 21684232 21716633 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5410 S 9 1 0 "" NA19129 nsv53790 12 21938743 21938844 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv72368 M 24 "" nsv53503 12 21959119 21959715 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv72081 M 24 "" nsv638 12 21978139 21993559 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2877 S 9 1 0 "" NA18555 nsv639 12 22002246 22044745 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6495 S 9 0 1 "" NA12156 essv14178 12 22032101 22250748 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19140 dgv482e1 12 22032101 22628174 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv453,essv10260 M 271 0 0 "" NA18506 nsv53830 12 22077849 22078008 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv72408 M 24 "" nsv438196 12 22086469 22125325 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470382,nssv470383,nssv470384 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA19141,NA19142 nsv437729 12 22125325 22159790 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467610 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19205 nsv437730 12 22133522 22148387 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467611 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19173 nsv438197 12 22139915 22142636 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470391,nssv470386,nssv470390,nssv470388,nssv470389,nssv470387 M 269 0 6 Samples from several populations that are part of the HapMap project. "" NA19171,NA19173,NA19200,NA19202,NA19204,NA19205 nsv521691 12 22172193 22172536 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698310 S 2026 1 0 "" nsv521274 12 22228472 22357042 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv692291,nssv691620 M 2026 0 2 "" esv33913 12 22307370 22313507 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98843,essv96962,essv95632,essv93658,essv97153,essv98455 M 51 6 0 "" 21606,21817,21841,21972,22075,22352 essv12236 12 22333762 22472221 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19101 nsv640 12 22438256 22485775 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5411,nssv6497,nssv1067,nssv10856,nssv1987,nssv4017 M 9 0 6 "" NA12156,NA12878,NA18555,NA18956,NA19129,NA19240 nsv8930 12 22461792 22480708 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20510,nssv21029,nssv21838,nssv23731,nssv23574 M 31 5 0 Samples from several populations that are part of the HapMap project. "" NA18502,NA18853,NA19132,NA19144,NA19173 nsv508667 12 22462192 22479954 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617398,nssv618859,nssv620044,nssv622655 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv469166 12 22509872 22557798 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544129 S 1557 0 1 "" NINDS_145 nsv507632 12 22523026 22529026 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620495 S 4 1 0 "" NA15510 nsv528499 12 22756692 22761409 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705104 S 2026 0 1 "" nsv524506 12 22759432 22761409 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700450 S 2026 0 1 "" nsv507633 12 22791673 22797673 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617828,nssv623102,nssv619066 M 4 3 0 "" CHM,NA10860,NA18994 nsv52535 12 22913839 22913839 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71113 M 24 "" nsv641 12 22939791 22974444 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2878 S 9 1 0 "" NA18555 dgv91n21 12 22958569 23580568 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv528353,nsv519732 M 2026 2 0 "" dgv92n21 12 23045722 23047861 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv520268,nsv525732 M 2026 0 2 "" nsv522666 12 23046972 23047861 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv706070 S 2026 0 1 "" nsv517579 12 23474357 23500373 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv673174,nssv652426 M 2026 0 2 "" nsv518314 12 23537311 23539403 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695745 S 2026 1 0 "" nsv528294 12 23569189 23570012 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704869 S 2026 0 1 "" nsv818896 12 23624709 23625382 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417584 S 112 1 0 "" NA18972 nsv832350 12 23626836 23808821 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449726 S 95 0 1 "" nsv832351 12 23672999 23867574 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449727,nssv1449730,nssv1449729 M 95 2 1 "" nsv469167 12 23727479 23751907 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544130 S 1557 0 1 "" NINDS_106 esv33613 12 23830794 23831195 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98802,essv97008,essv99005,essv93787,essv97129,essv98352 M 51 6 0 "" 21606,21817,21938,21972,22075,22352 nsv433520 12 23900409 23914981 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463401 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA18956 nsv525031 12 23905336 23907449 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701072 S 2026 0 1 "" nsv518599 12 24030629 24031025 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694252 S 2026 0 1 "" nsv642 12 24068785 24113562 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9012 S 9 0 1 "" NA12156 nsv469168 12 24295264 24326688 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544131 S 1557 0 1 "" 1780862194_A nsv519893 12 24372728 24389832 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697110 S 2026 0 1 "" esv2422312 12 24410659 25112953 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161530 S 181 1 0 "" ND03463 nsv643 12 24420618 24450987 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5412 S 9 1 0 "" NA19129 nsv832352 12 24426090 24627807 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449731 S 95 1 0 "" nsv645 12 24575181 24614688 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6498 S 9 0 1 "" NA12156 nsv469169 12 24583650 25248947 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544132 S 1557 1 0 "" NINDS_249 nsv469173 12 24782442 25098920 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544135 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01379 nsv527424 12 24846320 24846442 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703862 S 2026 0 1 "" nsv646 12 24939104 24954110 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2879 S 9 1 0 "" NA18555 nsv520878 12 24946158 24947332 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv678592,nssv676845 M 2026 0 2 "" nsv832353 12 24952087 25011242 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449733,nssv1449732,nssv1449734,nssv1449737,nssv1449735,nssv1449736 M 95 6 0 "" nsv525641 12 24979579 24981353 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701795 S 2026 1 0 "" nsv469174 12 25020282 25048396 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544136 S 1557 0 1 "" 1780854339_A nsv525326 12 25078437 25082058 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701436 S 2026 0 1 "" nsv507634 12 25081583 25087583 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620496,nssv619067,nssv623103 M 4 3 0 "" NA10860,NA15510,NA18994 nsv52528 12 25096052 25104876 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71106 M 24 "" dgv483e1 12 25125048 25143445 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv5704,esv1291 M 271 0 0 "" NA18550 nsv515612 12 25163294 25232444 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv664102,nssv688328,nssv692203 M 2026 3 0 "" nsv53768 12 25176687 25177145 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv72346 M 24 "" nsv522233 12 25283549 25288549 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695011 S 2026 0 1 "" nsv647 12 25350047 25383158 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1068 S 9 1 0 "" NA19240 nsv515959 12 25439546 25441894 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv665474,nssv655824 M 2026 0 2 "" nsv520540 12 25525442 25527287 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv672304,nssv676981,nssv684392,nssv676412 M 2026 0 4 "" nsv519712 12 25540624 25543709 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv657805,nssv681275,nssv672945,nssv675759,nssv691141 M 2026 0 5 "" dgv484e1 12 25540624 25545712 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv19857,esv1278 M 271 0 0 "" NA12234 nsv437731 12 25563026 25571434 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467612 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19208 nsv509460 12 25666235 25693395 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618091 S 4 1 0 "" CHM nsv832354 12 25676412 25873288 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449741,nssv1449738 M 95 2 0 "" dgv485e1 12 25883598 26052383 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv123,essv19106 M 271 0 0 "" NA07055 nsv522358 12 25897333 25904280 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695139 S 2026 0 1 "" nsv528977 12 25924553 25925920 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705676 S 2026 0 1 "" nsv433521 12 26018497 26024052 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463402 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA18956 nsv517117 12 26018497 26025192 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv654048,nssv687881,nssv655898,nssv677123,nssv687789,nssv656088,nssv653814,nssv675385,nssv683463,nssv667311,nssv672757,nssv667377,nssv676574,nssv690755,nssv660777,nssv668897 M 2026 0 16 "" nsv522351 12 26018497 26040970 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694158 S 2026 0 1 "" nsv648 12 26221558 26266453 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9014 S 9 0 1 "" NA12156 nsv524588 12 26424670 26425333 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700547 S 2026 0 1 "" nsv649 12 26428646 26460391 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1988 S 9 1 0 "" NA18555 nsv832355 12 26524738 26700467 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449742 S 95 1 0 "" nsv523964 12 27052396 27053543 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699814 S 2026 0 1 "" nsv53319 12 27106627 27106795 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71897 M 24 "" nsv832356 12 27118051 27310617 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449743 S 95 1 0 "" nsv521872 12 27158221 27679741 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694644 S 2026 1 0 "" nsv469175 12 27333099 27384005 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544137 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00557 nsv832357 12 27444118 27483233 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449745,nssv1449744 M 95 2 0 "" nsv650 12 27454680 27488659 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1069 S 9 1 0 "" NA19240 nsv523517 12 27517154 27525477 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699290 S 2026 1 0 "" nsv437732 12 27520009 27546667 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467613 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19145 nsv519752 12 27522647 27525477 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv658144,nssv692776,nssv701781,nssv678964,nssv690095 M 2026 4 1 "" dgv36n17 12 27530251 27551070 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437737,nsv437736,nsv437734,nsv437733 M 60 0 4 "" NA18857,NA19154,NA19173,NA19240 nsv438198 12 27532740 27533809 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470392,nssv470393 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA19171,NA19173 nsv651 12 27534407 27564651 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1071 S 9 0 1 "" NA19240 dgv16n64 12 27537993 27545813 CNV Loss Wang_et_al_2007 17921354 SNP_array nsv818897,nsv818898 M 112 0 6 "" NA18515,NA18516,NA18517,NA19143,NA19144,NA19145 nsv442638 12 27539008 27542629 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv8931 12 27539237 27546535 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22943,nssv21059,nssv23853,nssv21868 M 31 0 4 Samples from several populations that are part of the HapMap project. "" NA18517,NA19144,NA19173,NA19240 dgv486e1 12 27539678 27542418 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv20851,esv975,essv13959 M 271 0 0 "" NA11829,NA19160 nsv517383 12 27539678 27545813 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv693030,nssv658872,nssv667083,nssv676075,nssv687862,nssv682461,nssv667720,nssv669742,nssv683916,nssv676317,nssv675499,nssv658929,nssv674927,nssv656669,nssv662193,nssv689746,nssv651863,nssv676926,nssv688256,nssv652454,nssv664974,nssv656391,nssv684393,nssv655899,nssv686703,nssv664378,nssv654774,nssv680123,nssv671700,nssv663440,nssv685415,nssv679943 M 2026 0 32 "" nsv438199 12 27539977 27545038 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470395,nssv470410,nssv470404,nssv470405,nssv470402,nssv470409,nssv470399,nssv470394,nssv470398,nssv470400,nssv470401,nssv470406,nssv470397,nssv470403 M 269 0 14 Samples from several populations that are part of the HapMap project. "" NA18515,NA18855,NA18857,NA19099,NA19100,NA19143,NA19145,NA19152,NA19154,NA19160,NA19171,NA19173,NA19239,NA19240 nsv832358 12 27563216 27749639 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449746 S 95 1 0 "" nsv520981 12 27590587 27601182 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694411 S 2026 0 1 "" dgv189n27 12 27638020 27723575 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv469177,nsv469176 M 1557 2 0 "" HGDP00693,HGDP00733 nsv521002 12 27689411 27691713 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694412 S 2026 0 1 "" nsv469178 12 27740050 27806212 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544140 S 1557 1 0 "" 1780862457_A nsv528604 12 27951898 27954018 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705230 S 2026 0 1 "" nsv437738 12 27984381 27990663 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467619 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18500 nsv442639 12 27986760 27988911 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv522148 12 28091505 28091579 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694922 S 2026 1 0 "" nsv652 12 28099880 28120361 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1989,nssv1072 M 9 2 0 "" NA18555,NA19240 nsv509461 12 28109520 28121319 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623627 S 4 1 0 "" NA18994 nsv507635 12 28233562 28239562 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617829 S 4 1 0 "" CHM nsv653 12 28313188 28337655 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9015 S 9 0 1 "" NA12156 nsv527047 12 28361351 28508479 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703423 S 2026 0 1 "" nsv469179 12 28368114 28435731 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544141 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00752 nsv523622 12 28370038 28409826 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699419 S 2026 1 0 "" dgv93n21 12 28394989 28496693 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv528465,nsv522919 M 2026 0 2 "" nsv469181 12 28409826 28520243 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544142 S 1557 0 1 "" NINDS_223 dgv190n27 12 28419575 28487596 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv469184,nsv469182 M 1557 0 2 "" 1780862576_A,HGDP01385 nsv523992 12 28443864 28491511 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699848 S 2026 0 1 "" dgv191n27 12 28455148 28491511 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv469186,nsv469185 M 1557 0 2 "" HGDP00752,HGDP01033 nsv521777 12 28466092 28496693 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694544 S 2026 0 1 "" nsv654 12 28467893 28498797 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6499 S 9 1 0 "" NA12156 nsv519119 12 28472369 28496693 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696595 S 2026 1 0 "" nsv469188 12 28474060 28520243 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544148 S 1557 0 1 "" NINDS_183 nsv516088 12 28481418 28491511 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv666121,nssv657218 M 2026 2 0 "" nsv469189 12 28590431 28636597 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544149 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00285 nsv442260 12 28656614 28658887 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv523734 12 28952979 28974685 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699550 S 2026 1 0 "" dgv487e1 12 29002049 29181116 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv15805,esv401 M 271 0 0 "" NA19223 nsv519276 12 29101388 29117347 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696761 S 2026 1 0 "" nsv510289 12 29148124 29154124 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622185,nssv621381,nssv618362 M 4 0 3 "" CHM,NA10860,NA15510 esv32710 12 29162322 29164589 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97505 S 51 0 1 "" 21616 esv33168 12 29192719 29194422 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99795 S 51 1 0 "" 22086 nsv437739 12 29220772 29230133 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467620 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19094 esv33218 12 29283606 29284137 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99444 S 51 1 0 "" 22335 nsv525100 12 29467784 29477222 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701159 S 2026 0 1 "" nsv527807 12 29489113 29489747 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704301 S 2026 0 1 "" nsv469190 12 29503692 29702738 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544150 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01003 nsv507636 12 29751837 29757837 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623104,nssv619068 M 4 2 0 "" NA10860,NA18994 nsv528476 12 29775820 29786802 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705079 S 2026 0 1 "" nsv469191 12 29830895 29990037 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544151 S 1557 0 1 "" NINDS_133 nsv526146 12 29880559 30004090 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702401 S 2026 1 0 "" nsv524554 12 29906457 29906761 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700508 S 2026 0 1 "" dgv488e1 12 29914434 30066499 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv13146,esv218,essv13437,essv12230 M 271 0 0 "" NA19101,NA19102,NA19192 nsv656 12 29974896 30007343 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4018 S 9 1 0 "" NA12878 nsv510290 12 30106469 30112469 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622193 S 4 0 1 "" NA10860 nsv53516 12 30113251 30113251 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv72094 M 24 "" nsv8932 12 30128382 30134945 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19132,nssv20506,nssv21457,nssv23970 M 31 0 4 Samples from several populations that are part of the HapMap project. "" NA11830,NA18552,NA18942,NA18972 nsv438200 12 30128618 30132410 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470411 S 269 0 1 Samples from several populations that are part of the HapMap project. "" NA18856 nsv442641 12 30128768 30135200 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" esv33466 12 30131342 30137446 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv94472 S 51 0 1 "" 21808 nsv528183 12 30132032 30136371 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704735 S 2026 0 1 "" nsv821695 12 30178581 30341441 CNV Loss Sebat_et_al_2004 15273396 ROMA Custom Nimblegen photoprint 85000 probe ROMA oligo array nssv1421333 S 31 0 1 "" nsv8933 12 30190617 30198053 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22972,nssv20895 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18537,NA19240 nsv516421 12 30200343 30302566 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv688257,nssv668265,nssv655207,nssv674468 M 2026 4 0 "" nsv8934 12 30284578 30296015 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25813,nssv23602 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18502,NA19221 nsv832360 12 30284596 30446960 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449747 S 95 1 0 "" nsv8936 12 30298960 30300328 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24027 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18972 nsv517916 12 30346112 30376878 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695328 S 2026 1 0 "" nsv8937 12 30348429 30353765 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18671,nssv20688,nssv18935 M 31 3 0 Samples from several populations that are part of the HapMap project. "" NA10847,NA12872,NA18564 esv33180 12 30362884 30369496 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98733,essv100808,essv99956 M 51 3 0 "" 21606,21656,22086 nsv522000 12 30367455 30376878 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694769 S 2026 0 1 "" esv32559 12 30369858 30369965 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100838,essv98153,essv94405,essv98948,essv97201,essv100032,essv99636,essv98069,essv99326,essv100305,essv99384,essv98384,essv94163 M 51 0 13 "" 21656,21772,21808,21938,22075,22086,22217,22259,22275,22300,22335,22352,22394 nsv507637 12 30392646 30398646 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623105,nssv617830,nssv620497 M 4 3 0 "" CHM,NA15510,NA18994 esv33254 12 30395342 30400632 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101594,essv98861,essv97503,essv100714,essv95208,essv98272,essv94392,essv96910,essv95712,essv93054,essv98938,essv92931,essv93781,essv97094,essv98607,essv100012,essv93340,essv99656,essv98082,essv99141,essv100208,essv100360,essv99435,essv98408,essv96396,essv94159 M 51 26 0 "" 21603,21606,21616,21656,21721,21772,21808,21817,21841,21863,21938,21939,21972,22075,22085,22086,22170,22217,22259,22275,22286,22300,22335,22352,22371,22394 esv32665 12 30432761 30440459 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93770,essv100073 M 51 2 0 "" 21972,22086 nsv525673 12 30441788 30441854 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701830 S 2026 0 1 "" nsv469192 12 30569892 30598302 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544152 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00530 nsv523846 12 30597617 30598457 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699680 S 2026 0 1 "" nsv53388 12 30621209 30621209 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71966 M 24 "" nsv832361 12 30685297 30888508 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449748 S 95 0 1 "" nsv515645 12 30702093 30704095 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv693979,nssv664231,nssv659165,nssv669996,nssv660267 M 2026 0 5 "" nsv657 12 30811046 30844513 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5413 S 9 1 0 "" NA19129 esv2422447 12 30846078 31341082 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161342 S 181 1 0 "" ND03704 nsv832362 12 30849053 31016250 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449749 S 95 0 1 "" dgv7e196 12 30963226 31237262 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array esv2422264,esv2422323,esv2422366,esv2422496,esv2422254 M 181 5 0 "" ND03231,ND03406,ND03662,ND03790,ND04019 nsv658 12 30963667 30999916 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4019 S 9 0 1 "" NA12878 nsv522849 12 30987048 31020397 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698502 S 2026 1 0 "" nsv520694 12 31004731 31005838 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697561 S 2026 0 1 "" nsv524047 12 31007000 31039929 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699911 S 2026 0 1 "" dgv489e1 12 31016734 31382371 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv10463,essv812,essv3241,essv8791,essv20143,essv2964,essv8438,essv10799,essv11833,essv4580,essv22099,essv4453,essv8761,essv11137,essv15251,essv12590,essv24287,essv23206,essv11952,essv12170,essv7211,essv8213,essv2867,essv13667,essv16089,essv12805,essv5474,essv8278,essv15422,essv17177,essv15071,essv12483,essv5050,essv6775,essv14368,essv18827,essv5373,essv23827,essv13055,essv24712,essv9326,esv620,essv23041,essv10630,essv19291,essv13442,essv4661,essv11044,essv11573,essv16545,essv9812,essv10873,essv21402,essv7323,essv21986,essv16813,essv15668,essv9718,essv17890,essv17446,essv21179,essv1263,essv13176,essv2084,essv18922,essv12620,essv16075,essv2637,essv16901,essv4397 M 271 0 0 "" NA07345,NA10838,NA10856,NA10857,NA11829,NA11830,NA11995,NA12003,NA12005,NA12043,NA12156,NA12740,NA12751,NA12763,NA12812,NA18500,NA18501,NA18502,NA18508,NA18515,NA18516,NA18521,NA18523,NA18524,NA18547,NA18552,NA18562,NA18563,NA18570,NA18573,NA18576,NA18594,NA18632,NA18852,NA18853,NA18855,NA18863,NA18871,NA18872,NA18912,NA18913,NA18949,NA18953,NA18967,NA18973,NA18974,NA18981,NA18995,NA19092,NA19094,NA19098,NA19100,NA19101,NA19102,NA19103,NA19116,NA19119,NA19120,NA19129,NA19143,NA19171,NA19173,NA19192,NA19194,NA19203,NA19205,NA19207,NA19210,NA19211 nsv525788 12 31018427 31020397 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701967 S 2026 0 1 "" nsv469193 12 31024332 31041450 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544153 S 1557 0 1 "" NINDS_169 esv2751043 12 31039929 31390938 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6985030,essv6985029 M 771 1 0 "" BEC_821 nsv524633 12 31049786 31053881 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700598 S 2026 0 1 "" dgv61e55 12 31062295 31305740 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv2751045,esv2751044,esv2751047,esv2751048 M 771 4 0 "" BEC_377,BEC_510,BEC_592,SPC_85 esv2751046 12 31065500 31576000 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6983056,essv6983055 M 771 1 0 "" BEC_538 dgv192n27 12 31092984 31298174 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv469200,nsv469197,nsv469195,nsv469196,nsv469198,nsv469199 M 1557 6 0 "" 1782681093_A,1782681287_A,HGDP00088,HGDP00105,HGDP00450,HGDP01386 nsv515974 12 31092984 31344017 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv657394,nssv668347,nssv684394,nssv691155,nssv691258,nssv679724,nssv652044,nssv690641,nssv692645,nssv662135,nssv689700,nssv658573,nssv689624,nssv656470,nssv703433,nssv685064,nssv691512,nssv679822,nssv652709,nssv652364,nssv683943,nssv692113,nssv701390,nssv661626,nssv677691,nssv677862,nssv668807,nssv666611,nssv676277,nssv702194,nssv694818,nssv664670,nssv693776,nssv661532,nssv683481,nssv664306,nssv671743,nssv689330,nssv672491,nssv658208,nssv679536,nssv664846,nssv672438,nssv666815,nssv660241,nssv700664,nssv676465,nssv662619 M 2026 46 2 "" nsv659 12 31095013 31140322 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9016 S 9 0 1 "" NA12156 nsv8938 12 31097721 31100035 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23630 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18502 dgv17n64 12 31101381 31298174 CNV Gain Wang_et_al_2007 17921354 SNP_array nsv818901,nsv818899 M 112 4 0 "" NA12740,NA12751,NA19119,NA19120 nsv832363 12 31101745 31271301 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449750 S 95 1 0 "" dgv8e196 12 31110214 31173418 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array esv2422386,esv2422453,esv2422218,esv2422436,esv2422449,esv2422267,esv2422282 M 181 7 0 "" ND01220,ND01695,ND03633,ND04069,ND04291,ND04498,ND05370 esv2422283 12 31114046 31151259 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161375 S 181 1 0 "" ND01613 dgv62e55 12 31116977 31305740 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv2751062,esv2751060,esv2751064,esv35119,esv2751069,esv2751059,esv2751056,esv2751067,esv2751070,esv35017,esv34653,esv34728,esv34757,esv34800,esv34809,esv2751049,esv2751050,esv2751051,esv2751052,esv2751055,esv2751057,esv2751058,esv2751061,esv2751063,esv2751065,esv2751066,esv2751068 M 771 27 0 "" BEC_104,BEC_305,BEC_311,BEC_385,BEC_406,BEC_447,BEC_516,BEC_531,BEC_562,BEC_644,BEC_651,BEC_677,BEC_678,BEC_714,BEC_715,BEC_734,BEC_94,NA10838,NA12003,NA12156,NA12751,NA12763,NA18852,NA19210,SPC_10,SPC_124,SPC_18 dgv63e55 12 31116977 31404985 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv35092,esv2751053,esv2751054,esv2751071,esv2751072,esv2751077 M 771 6 0 "" BEC_444,BEC_613,BEC_676,BEC_693,BEC_694,NA19119 dgv490e1 12 31125435 31335485 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv8513,essv18496,essv13219,essv14846,essv18514,essv9311,essv21916,essv15170,essv21503 M 271 0 0 "" NA10838,NA12003,NA12156,NA12763,NA18523,NA18852,NA19119,NA19120,NA19210 esv2422308 12 31126055 31166437 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161507 S 181 1 0 "" ND01588 nsv509462 12 31138680 31172441 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620964 S 4 1 0 "" NA15510 dgv193n27 12 31152226 31306258 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv469252,nsv469233,nsv469232,nsv469213,nsv469246,nsv469209,nsv469206,nsv469236,nsv469203,nsv469242,nsv469201,nsv469240,nsv469207,nsv469225,nsv469210,nsv469218,nsv469223,nsv469237,nsv469229,nsv469234,nsv469215,nsv469212,nsv469214,nsv469202,nsv469251,nsv469244,nsv469245,nsv469248,nsv469231,nsv469250,nsv469241,nsv469221,nsv469208,nsv469220,nsv469211,nsv469226,nsv469224,nsv469230,nsv469222,nsv469219,nsv469243,nsv469247,nsv469228,nsv469239,nsv469204,nsv469217,nsv469235 M 1557 47 0 "" 1780854159_A,1780854231_A,1780854279_A,1780854296_A,1780854362_A,1780854446_A,1780854481_A,1780862127_A,1780862312_A,1780862528_A,1780862551_A,1780862574_A,1780862575_A,1780862576_A,1782681076_A,1782681109_A,1782681115_A,1782681164_A,1782681277_A,1782681296_A,1782681316_A,1798860552_A,HGDP00009,HGDP00060,HGDP00224,HGDP00230,HGDP00514,HGDP00533,HGDP00563,HGDP00673,HGDP00698,HGDP00915,HGDP00925,HGDP00951,HGDP01155,HGDP01253,HGDP01274,HGDP01280,HGDP01300,HGDP01362,HGDP01377,NINDS_159,NINDS_178,NINDS_245,NINDS_256,NINDS_29,NINDS_76 nsv8939 12 31155092 31299364 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18701,nssv21017,nssv18490,nssv21119,nssv25856,nssv19162,nssv25835,nssv21898,nssv20695,nssv20674,nssv23880,nssv19009,nssv19944,nssv21928,nssv20540,nssv20366,nssv21487,nssv20536,nssv20925,nssv23907,nssv23658,nssv24054,nssv20955,nssv21459,nssv21149,nssv23001,nssv21369 M 31 21 1 Samples from several populations that are part of the HapMap project. "" NA10839,NA11830,NA12740,NA12802,NA12872,NA18502,NA18517,NA18537,NA18552,NA18563,NA18572,NA18853,NA18942,NA18972,NA18975,NA18980,NA19007,NA19144,NA19173,NA19221,NA19240 esv33836 12 31160462 31242543 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93281 S 51 1 0 "" 22170 dgv491e1 12 31169298 31247316 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv21601,essv24458 M 271 0 0 "" NA12155,NA12865 dgv492e1 12 31169298 31303021 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv24163,essv23697,essv9507 M 271 0 0 "" NA12740,NA12751,NA18521 dgv64e55 12 31169298 31305740 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv2751074,esv2751083,esv2751080,esv2751081,esv34408,esv34274,esv34711,esv2751073,esv2751075,esv2751076,esv2751078,esv2751079,esv2751082,esv2751084,esv2751085 M 771 15 0 "" BEC_236,BEC_355,BEC_379,BEC_402,BEC_501,BEC_597,BEC_611,BEC_629,BEC_639,BEC_687,NA18521,NA18523,NA19120,SPC_168,SPC_99 nsv660 12 31169503 31190912 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1073 S 9 1 0 "" NA19240 nsv818902 12 31177747 31202342 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418197,nssv1418198 M 112 2 0 "" NA19143,NA19145 dgv493e1 12 31202207 31382371 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv14616,essv11225 M 271 0 0 "" NA19093,NA19204 nsv469253 12 31202342 31298174 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544213 S 1557 1 0 "" 1780862195_A nsv508668 12 31204482 31231408 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618866 S 4 0 1 "" NA10860 nsv818903 12 31248369 31276546 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417921 S 112 1 0 "" NA18852 nsv469309 12 31248369 31300846 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544220 S 1557 1 0 "" NINDS_156 nsv442642 12 31264657 31293961 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv524737 12 31291168 31355930 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700728 S 2026 1 0 "" nsv832364 12 31359257 31539411 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449752,nssv1449753 M 95 0 2 "" nsv661 12 31361233 31394647 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5414 S 9 1 0 "" NA19129 nsv832365 12 31534078 31699799 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449754 S 95 0 1 "" nsv52934 12 31613199 31622374 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71512 M 24 "" nsv510291 12 31647364 31653364 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618363 S 4 0 1 "" CHM nsv662 12 31686533 31720489 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1074 S 9 1 0 "" NA19240 nsv522379 12 31707890 31708430 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695159 S 2026 0 1 "" esv2422415 12 31754627 31821989 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161329 S 181 1 0 "" ND01693 nsv8940 12 31791171 31878630 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20286,nssv22925,nssv19192,nssv18965,nssv19592 M 31 5 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA10847,NA10863,NA18504,NA18942 nsv442261 12 31791817 31801173 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv818904 12 31795038 31803855 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418019,nssv1415692 M 112 0 2 "" NA07345,NA12248 nsv515490 12 31795038 31810455 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv653299,nssv656003,nssv671086,nssv700665,nssv659773,nssv684331,nssv693980,nssv655278,nssv675210,nssv684859 M 2026 0 10 "" nsv522362 12 31821038 31872560 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694159 S 2026 0 1 "" nsv663 12 31833256 31877875 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1990 S 9 0 1 "" NA18555 nsv523907 12 31835742 31839532 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699750 S 2026 0 1 "" nsv519112 12 31836252 31848648 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696587 S 2026 0 1 "" nsv511015 12 31852716 31962322 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618614,nssv624335,nssv622395 M 4 0 0 "" CHM,NA10860,NA18994 esv2750757 12 31872616 31876210 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99395 S 51 0 1 "" 22335 esv32719 12 31877881 31878466 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100676,essv95594,essv93296 M 51 0 3 "" 21656,21841,22170 dgv494e1 12 31882773 31963864 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1103,essv24613 M 271 0 0 "" NA12875 dgv65e55 12 31882773 31972700 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv35043,esv2751087,esv34737,esv34926,esv2751086,esv2751088,esv2751089 M 771 7 0 "" BEC_387,BEC_826,NA12740,NA12753,NA12763,SPC_150,SPC_159 esv33521 12 31885599 31887076 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv94237 S 51 0 1 "" 22394 nsv8941 12 31890959 31954866 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21489 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA12740 dgv18n64 12 31892782 31954269 CNV Gain Wang_et_al_2007 17921354 SNP_array nsv818905,nsv818906 M 112 3 0 "" NA12740,NA12751,NA12875 dgv194n27 12 31892782 31960144 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv469330,nsv469329,nsv469328,nsv469323,nsv469320,nsv469324,nsv469318,nsv469325,nsv469321,nsv469322,nsv469331,nsv469326 M 1557 12 0 "" 1780854418_A,1780862459_A,1780862573_A,1780862585_A,1788485590_A,HGDP00274,HGDP01299,NINDS_146,NINDS_198,NINDS_259,NINDS_37,NINDS_81 nsv516507 12 31892782 31960144 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv652994,nssv688358,nssv686613,nssv658376,nssv696574,nssv683182,nssv661381,nssv674273,nssv672946,nssv669769,nssv693399,nssv654238,nssv654800,nssv654494,nssv677982,nssv659816,nssv653020,nssv661830,nssv662245,nssv662711,nssv680108,nssv680994,nssv683335,nssv672155,nssv678166,nssv688738,nssv681888,nssv661365,nssv656489,nssv671962,nssv682222,nssv681684,nssv690210,nssv683989,nssv683161,nssv661401 M 2026 23 13 "" nsv469332 12 31895437 31985368 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544235 S 1557 1 0 "" 1780862176_A dgv66e55 12 31904362 31954300 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv34935,esv34771,esv2751090 M 771 3 0 "" BEC_24,NA10855,NA11831 dgv495e1 12 31904362 31963864 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv20833,essv22793,essv18516,essv24178,essv23706,essv24546 M 271 0 0 "" NA10855,NA11831,NA12740,NA12751,NA12753,NA12763 dgv67e55 12 31904362 31968090 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv2751093,esv2751091,esv2751092,esv2751094,esv2751095 M 771 5 0 "" BEC_510,BEC_575,BEC_705,SPC_14,SPC_86 nsv818907 12 31943689 31945102 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416091,nssv1416092,nssv1418100,nssv1418115,nssv1418104 M 112 0 5 "" NA06991,NA06993,NA11881,NA12801,NA12813 nsv528760 12 31943689 31965665 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705422 S 2026 0 1 "" nsv442262 12 31944499 31949242 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv507638 12 31946340 31952340 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620499 S 4 1 0 "" NA15510 nsv664 12 31959768 31987859 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2880 S 9 1 0 "" NA18555 nsv52722 12 31962323 31962323 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71300 M 24 "" nsv515512 12 32040182 32041510 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv653404,nssv691471,nssv691368,nssv663208,nssv690935,nssv674712,nssv666642,nssv674469,nssv688043,nssv671117 M 2026 0 10 "" nsv521398 12 32040182 32047983 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698009 S 2026 0 1 "" nsv521441 12 32085642 32089144 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698051 S 2026 0 1 "" esv2751096 12 32171607 32594051 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6981053,essv6981054,essv6988349,essv6985461 M 771 1 0 "" BEC_345 nsv53118 12 32204206 32204206 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71696 M 24 "" nsv437142 12 32218425 32246233 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467023 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA10863 nsv832366 12 32219826 32402627 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449755,nssv1449756 M 95 2 0 "" nsv8942 12 32221610 32228425 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20316 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA10863 nsv665 12 32247541 32281987 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2881 S 9 1 0 "" NA18555 nsv518108 12 32275691 32277681 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695522 S 2026 1 0 "" nsv526311 12 32275691 32277681 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702595 S 2026 0 1 "" nsv528838 12 32345199 32345552 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705515 S 2026 0 1 "" nsv438201 12 32414722 32422479 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470413,nssv470412 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA19137,NA19139 nsv526183 12 32422479 32427082 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702445 S 2026 0 1 "" nsv469346 12 32422487 32478732 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544237 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00017 nsv469347 12 32447113 32493346 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544238 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01200 nsv527786 12 32652825 32663179 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704277 S 2026 1 0 "" nsv507639 12 32763583 32769583 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619069,nssv623106 M 4 2 0 "" NA10860,NA18994 nsv516937 12 32871284 32875597 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv675595,nssv658411,nssv693328,nssv655060,nssv674333,nssv672522 M 2026 0 6 "" nsv526287 12 32871284 32879242 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702567 S 2026 0 1 "" nsv832367 12 32954911 33190234 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449757 S 95 1 0 "" nsv507640 12 33128644 33134644 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620500 S 4 1 0 "" NA15510 nsv667 12 33168383 33202105 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4020 S 9 1 0 "" NA12878 nsv668 12 33172942 33206150 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9834 S 9 0 1 "" NA18507 nsv8943 12 33185151 33198835 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19974,nssv21179 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18975,NA19173 nsv437740 12 33185304 33203464 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467621 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19173 nsv517258 12 33192424 33194609 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv685113,nssv666365,nssv665244,nssv679691,nssv683101,nssv654148,nssv676575,nssv686704,nssv662377,nssv688368,nssv672390,nssv679217,nssv667675,nssv680285,nssv688547,nssv692445,nssv658785,nssv673944,nssv661831,nssv688700,nssv682551,nssv652063,nssv668785,nssv681430 M 2026 0 24 "" nsv528382 12 33192424 33201064 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704971 S 2026 0 1 "" nsv442643 12 33192673 33198641 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv519988 12 33224016 33228724 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694358 S 2026 0 1 "" nsv511016 12 33253665 33294793 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618622 S 4 0 0 "" CHM nsv669 12 33254062 33310067 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9835,nssv1991,nssv10858,nssv1075,nssv9283,nssv5415 M 9 0 6 "" NA18507,NA18517,NA18555,NA18956,NA19129,NA19240 nsv832368 12 33260229 33479765 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449758 S 95 1 0 "" nsv508669 12 33270134 33294793 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622656 S 4 0 1 "" NA18994 nsv442644 12 33270866 33286685 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv507641 12 33281625 33287625 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620501 S 4 1 0 "" NA15510 nsv528000 12 33299398 33310842 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704525 S 2026 0 1 "" dgv496e1 12 33333291 34727104 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv22933,esv640,essv20757 M 271 0 0 "" NA07357 nsv8944 12 33349293 33350848 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23029 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19240 nsv670 12 33349718 33394367 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9017 S 9 0 1 "" NA12156 esv34883 12 33401400 34651600 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6990473,essv6987063,essv6987064,essv6980366 M 771 1 0 "" NA07357 nsv469348 12 33415349 34137023 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544239 S 1557 1 0 "" 1780854197_A nsv818908 12 33415349 34565140 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418020 S 112 1 0 "" NA07357 essv5432 12 33467973 33524866 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18542 nsv832369 12 33523495 33691008 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449759 S 95 1 0 "" nsv437741 12 33606133 33628125 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467622 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19100 nsv438202 12 33609514 33612689 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470417,nssv470415,nssv470416,nssv470414 M 269 0 4 Samples from several populations that are part of the HapMap project. "" NA18871,NA18872,NA19127,NA19129 nsv818909 12 33611229 33626202 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416966 S 112 0 1 "" NA19137 nsv442263 12 33614743 33623007 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv516215 12 33615916 33626202 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv659467,nssv666868,nssv692165,nssv687394,nssv690096,nssv668169,nssv689663,nssv689168 M 2026 0 8 "" nsv438203 12 33617670 33626050 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470418,nssv470420 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA19098,NA19100 nsv469739 12 33629831 33813501 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649760 M 265 0 0 Samples from several populations that are part of the HapMap project. "" nsv469350 12 33643597 34137023 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544241 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01232 nsv523443 12 33688021 34711193 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699199 S 2026 1 0 "" nsv8945 12 33778232 33779343 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21209 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19173 nsv8947 12 33781521 33791968 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19622 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA07029 nsv832371 12 33782428 33944047 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449760 S 95 0 1 "" nsv671 12 33801893 33832865 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10859 S 9 1 0 "" NA18956 nsv8948 12 33859257 33870723 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20725,nssv24081 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18972,NA18980 nsv509463 12 33878698 33919108 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619595,nssv620965 M 4 2 0 "" NA10860,NA15510 essv7210 12 33884264 34084037 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18547 nsv672 12 33901591 33910822 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6500,nssv4021 M 9 2 0 "" NA12156,NA12878 nsv8949 12 33985551 33986803 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20785 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18980 nsv8950 12 33989629 34000478 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21958,nssv24158 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18860,NA19144 nsv520568 12 34002761 34327658 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697491 S 2026 1 0 "" nsv527701 12 34002761 34711193 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704179 S 2026 1 0 "" dgv497e1 12 34051454 34266146 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv7969,essv9574 M 271 0 0 "" NA18501,NA19240 dgv498e1 12 34051454 34727104 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv14261,essv13978 M 271 0 0 "" NA19098,NA19100 nsv8951 12 34075687 34077082 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23716 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18502 nsv673 12 34085666 34127052 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1076 S 9 0 1 "" NA19240 nsv469523 12 34086234 34188854 CNV Gain Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649576 M 265 2 0 Samples from several populations that are part of the HapMap project. "" nsv8952 12 34090404 34099360 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23758 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19132 dgv499e1 12 34091669 34219171 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv16610,essv8000,essv8262,essv13279,essv9272,essv8708 M 271 0 0 "" NA19137,NA19153,NA19200,NA19201,NA19208,NA19221 nsv53752 12 34098682 34108086 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv72330 M 24 "" nsv8953 12 34099360 34108364 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23057,nssv23934,nssv25877,nssv23785 M 31 0 4 Samples from several populations that are part of the HapMap project. "" NA18517,NA19132,NA19221,NA19240 nsv442645 12 34099623 34107572 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv500e1 12 34103379 34122207 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv15946,essv12928,essv17385,essv11340,essv13336 M 271 0 0 "" NA18500,NA18515,NA18855,NA19094,NA19128 dgv501e1 12 34103379 34141643 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv11369,essv14243,essv14938 M 271 0 0 "" NA19100,NA19127,NA19132 essv12083 12 34103379 34172968 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19099 dgv502e1 12 34103379 34277165 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv10721,essv8395,essv13108 M 271 0 0 "" NA18508,NA18859,NA19093 nsv517511 12 34126870 34711193 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv673433,nssv680339,nssv688044,nssv670417,nssv663815,nssv663277,nssv703935,nssv663572,nssv704427,nssv674433,nssv700802,nssv679398,nssv704944,nssv671541,nssv692986,nssv695199,nssv676002,nssv693564,nssv667935,nssv698922,nssv679335,nssv701377,nssv652236,nssv655730,nssv675596,nssv687395,nssv671043,nssv669793,nssv701187,nssv666249,nssv683639,nssv664159,nssv697492,nssv670643,nssv683274,nssv669961,nssv666869,nssv659630 M 2026 6 32 "" nsv8954 12 34142134 34153372 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21239 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19173 nsv442264 12 34147976 34153819 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv442265 12 34206228 34694313 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv68e55 12 34237698 34651600 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv34741,esv34666 M 771 2 0 "" NA19098,NA19100 nsv8955 12 34238230 36144127 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20566,nssv25898,nssv24210,nssv20815,nssv24184,nssv23743,nssv21988 M 31 2 4 Samples from several populations that are part of the HapMap project. "" NA18502,NA18552,NA18860,NA18980,NA19144,NA19221 dgv195n27 12 34327658 34565140 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv469352,nsv469351,nsv469353 M 1557 3 0 "" HGDP00457,HGDP01033,HGDP01086 nsv469354 12 34327658 34565140 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544245 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01338 essv21920 12 34445062 34650850 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12057 nsv437143 12 34587117 34604197 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467024 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA10851 nsv52761 12 34718281 34718416 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71339 M 24 "" dgv503e1 12 36142962 36470532 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv4858,essv863,essv9452 M 271 0 0 "" NA18540,NA19000,NA19208 dgv504e1 12 36142962 37321303 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv7229,esv729,essv7628 M 271 0 0 "" NA18547 esv34542 12 36144000 37243600 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6979401,essv6979400,essv6979399,essv6990360,essv6986854,essv6986855 M 771 1 0 "" NA18547 essv19733 12 36177141 36255461 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA10859 nsv8956 12 36200442 36229150 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24236,nssv23961,nssv23770,nssv20596,nssv20346,nssv25919,nssv24108,nssv18995,nssv20985 M 31 3 6 Samples from several populations that are part of the HapMap project. "" NA10847,NA10863,NA18502,NA18517,NA18537,NA18552,NA18860,NA18972,NA19221 essv20020 12 36216093 36439696 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA07048 nsv527488 12 36219721 36718276 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703936 S 2026 0 1 "" nsv818910 12 36219721 37239340 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417169 S 112 1 0 "" NA18547 nsv8958 12 36250456 36269881 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20493 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA07048 nsv508671 12 36259567 36559612 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618877 S 4 0 1 "" NA10860 nsv524507 12 36270798 36411114 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700451 S 2026 0 1 "" nsv832372 12 36281502 36416018 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449770,nssv1449765,nssv1449761,nssv1449778,nssv1449777,nssv1449764,nssv1449769,nssv1449767,nssv1449768,nssv1449766,nssv1449776,nssv1449772,nssv1449771,nssv1449775,nssv1449763,nssv1449774 M 95 0 16 "" nsv433420 12 36301572 36404411 CNV Gain Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463301 S 9 1 0 Samples from several populations that are part of the HapMap project. "" NA12878 nsv437742 12 36328011 36407203 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467623 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18521 nsv442266 12 36340414 36394320 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv515744 12 36354967 36667312 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698992,nssv664648,nssv676003,nssv680585,nssv692090,nssv687129 M 2026 0 6 "" esv2422349 12 36390141 37047914 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161396 S 181 1 0 "" ND04361 esv2422488 12 36390141 37357001 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161452 S 181 1 0 "" ND01678 nsv438205 12 36397599 36433840 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470425,nssv470426,nssv470421,nssv470424,nssv470423,nssv470427,nssv470422 M 269 0 7 Samples from several populations that are part of the HapMap project. "" NA18853,NA18854,NA19100,NA19103,NA19132,NA19173,NA19208 nsv832373 12 36476801 36681198 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449780,nssv1449779 M 95 0 2 "" nsv818912 12 36528296 36667312 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417686,nssv1417402 M 112 0 2 "" NA18951,NA18999 dgv196n27 12 36528296 37151333 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv469355,nsv469357 M 1557 2 0 "" 1780854401_A,NINDS_103 nsv469356 12 36528296 37473675 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544247 S 1557 1 0 "" NINDS_6 nsv442267 12 36565610 36578346 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv818913 12 36599054 36667312 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417445 S 112 0 1 "" NA18953 nsv509464 12 36602088 36656360 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619599 S 4 1 0 "" NA10860 nsv511017 12 36602088 36795318 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624336 S 4 0 0 "" NA18994 esv2751097 12 36671779 37129708 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6988771,essv6984216,essv6984217,essv6984218,essv6987531 M 771 1 0 "" BEC_810 nsv510292 12 36700362 36706362 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622208 S 4 0 1 "" NA10860 nsv8959 12 36728858 36738532 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23812,nssv25940,nssv20845,nssv23797 M 31 4 0 Samples from several populations that are part of the HapMap project. "" NA18502,NA18980,NA19132,NA19221 nsv8960 12 36797896 36817772 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20376,nssv23839 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA10863,NA19132 essv22991 12 36860465 37089322 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA07357 nsv8961 12 36885435 36893509 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21517,nssv23866,nssv22954,nssv20875 M 31 0 4 Samples from several populations that are part of the HapMap project. "" NA11830,NA18504,NA18980,NA19132 nsv8962 12 36903982 36918798 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24262 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18860 nsv674 12 36931839 36965538 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9018 S 9 1 0 "" NA12156 nsv442268 12 36947182 36955164 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv8963 12 37005019 37011755 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20905 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18980 nsv8964 12 37034587 37042747 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25991,nssv23115 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA19221,NA19240 nsv510293 12 37090157 37096157 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621382,nssv618364 M 4 0 2 "" CHM,NA15510 nsv8965 12 37151411 37157067 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21269 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19173 nsv469358 12 37205791 37275672 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544249 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00313 dgv505e1 12 37328102 37332250 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv7634,esv1111 M 271 0 0 "" NA18547 nsv675 12 37399415 37430093 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10860 S 9 1 0 "" NA18956 nsv676 12 37470626 37502089 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1992 S 9 0 1 "" NA18555 nsv52810 12 37582347 37582448 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71388 M 24 "" nsv678 12 37752064 37775663 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6501 S 9 0 1 "" NA12156 nsv832374 12 37754701 37916636 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449781,nssv1449782 M 95 0 2 "" nsv679 12 37779425 37813089 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9020 S 9 1 0 "" NA12156 dgv21n68 12 37885629 38094544 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH nsv832376,nsv832375 M 95 2 0 "" nsv680 12 38079151 38112883 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1077 S 9 1 0 "" NA19240 nsv522940 12 38232621 38284411 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698603 S 2026 0 1 "" dgv197n27 12 38232621 38328487 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv469361,nsv469359 M 1557 0 2 "" HGDP00994,HGDP01414 nsv519635 12 38271473 38284411 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv684065,nssv657271 M 2026 0 2 "" nsv53793 12 38393412 38393479 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv72371 M 24 "" nsv522471 12 38570933 38575057 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705835 S 2026 0 1 "" dgv506e1 12 38586180 38618120 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv15444,essv12149,esv1187,essv12878 M 271 0 0 "" NA18502,NA18505,NA19206 nsv8966 12 38587700 38602567 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23824 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18502 nsv515811 12 38588866 38598763 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv662450,nssv686637,nssv656698,nssv675332,nssv676318,nssv664847 M 2026 0 6 "" nsv442269 12 38589773 38601293 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv8967 12 38614179 38617204 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23143 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19240 nsv681 12 38635437 38666133 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10861 S 9 1 0 "" NA18956 nsv519063 12 38822328 38825125 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696535 S 2026 0 1 "" nsv510294 12 38835680 38841680 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618365 S 4 0 1 "" CHM nsv437743 12 38840926 38843127 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467624 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19094 nsv832377 12 38991148 39141490 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449786 S 95 1 0 "" dgv37n17 12 39099031 39107443 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437744,nsv437745 M 60 0 2 "" NA18857,NA19154 nsv442646 12 39103864 39107744 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv69e55 12 39104262 39107745 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv34373,esv34482 M 771 0 2 "" NA19140,NA19142 nsv818914 12 39104527 39106899 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416786,nssv1416105,nssv1416117,nssv1416094,nssv1416787 M 112 0 5 "" NA19140,NA19141,NA19142,NA19160,NA19161 nsv438206 12 39104527 39106948 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470433,nssv470432,nssv470431,nssv470429,nssv470434,nssv470428 M 269 0 6 Samples from several populations that are part of the HapMap project. "" NA18855,NA18857,NA19140,NA19142,NA19152,NA19154 nsv515583 12 39104527 39111184 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv664002,nssv693094,nssv665797,nssv658636,nssv656275,nssv660302,nssv685453,nssv693400 M 2026 0 8 "" nsv522066 12 39106899 39116850 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694837 S 2026 0 1 "" nsv526848 12 39130103 39134380 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703206 S 2026 1 0 "" nsv518952 12 39143887 39153600 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696420 S 2026 1 0 "" nsv509465 12 39155866 39200135 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618092,nssv620966,nssv619605 M 4 3 0 "" CHM,NA10860,NA15510 nsv516022 12 39159293 39160355 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv662946,nssv657806,nssv688518,nssv705713,nssv678138,nssv677788,nssv660778,nssv665775,nssv671701,nssv685902 M 2026 1 9 "" nsv8969 12 39163332 39170649 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20704 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA10839 nsv52989 12 39165940 39166416 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71567 M 24 "" dgv38n17 12 39166327 39170933 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437748,nsv437749,nsv437747,nsv437750 M 60 0 4 "" NA18863,NA19100,NA19120,NA19145 nsv682 12 39166516 39205668 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10902,nssv9947,nssv1993,nssv1078,nssv5416 M 9 5 0 "" NA15510,NA18507,NA18555,NA19129,NA19240 nsv438207 12 39168293 39169671 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470436,nssv470435,nssv470437,nssv470439,nssv470438 M 269 0 5 Samples from several populations that are part of the HapMap project. "" NA18594,NA18605,NA18608,NA18968,NA18975 nsv53241 12 39170449 39170508 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71819 M 24 "" nsv81 12 39175711 39182456 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv81 S 1 1 0 "" NA15510 nsv8970 12 39190361 39237480 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20626 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18552 nsv832378 12 39229378 39418572 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449787 S 95 1 0 "" nsv683 12 39237740 39282525 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5417 S 9 0 1 "" NA19129 nsv519683 12 39253636 39273835 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv657556,nssv682056 M 2026 0 2 "" nsv832379 12 39340707 39519016 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449788 S 95 1 0 "" esv2751098 12 39368666 39466502 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6987243,essv6987244,essv6985744,essv6985745,essv6985746 M 771 1 0 "" SPC_4 nsv832380 12 39418573 39610228 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449789,nssv1449790 M 95 0 2 "" nsv52882 12 39429617 39429873 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71460 M 24 "" nsv53030 12 39453706 39453765 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71608 M 24 "" nsv524407 12 39576804 39577669 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700327 S 2026 0 1 "" nsv523801 12 39577669 39578736 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699630 S 2026 0 1 "" nsv832382 12 39645817 39775948 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449791 S 95 0 1 "" nsv684 12 39786179 39831306 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9021 S 9 0 1 "" NA12156 nsv52737 12 39795744 39799999 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71315 M 24 "" nsv517338 12 39940246 39948720 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv675577,nssv677668,nssv683666,nssv667059,nssv662712,nssv668127,nssv654282,nssv654948,nssv651772,nssv665285,nssv679316,nssv693429,nssv693595,nssv688519,nssv693146,nssv680995,nssv678213,nssv689868,nssv662268,nssv683776,nssv687661,nssv678167,nssv677522,nssv691369,nssv665989,nssv664363,nssv671907,nssv665923,nssv662923,nssv670091,nssv668227,nssv667791,nssv688701,nssv673250,nssv685868,nssv660268,nssv664450,nssv683302 M 2026 0 38 "" nsv52593 12 39946084 39946400 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71171 M 24 "" nsv832383 12 39979565 40133201 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449792 S 95 1 0 "" nsv832384 12 40058915 40257697 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449796,nssv1449794,nssv1449793 M 95 3 0 "" dgv507e1 12 40067025 40102269 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2159,esv1038 M 271 0 0 "" NA18978 nsv818915 12 40071264 40097330 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417620 S 112 1 0 "" NA18978 nsv832385 12 40245630 40252528 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449797 S 95 0 1 "" nsv521917 12 40296986 40299434 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694688 S 2026 0 1 "" nsv832386 12 40303526 40475743 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449798 S 95 1 0 "" nsv520892 12 40324438 40344405 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv683046,nssv677087 M 2026 2 0 "" nsv522657 12 40510567 40513143 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv706059 S 2026 0 1 "" nsv52888 12 40524321 40525144 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71466 M 24 "" nsv832387 12 40631808 40751772 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449799 S 95 0 1 "" nsv685 12 40706990 40721094 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9022 S 9 0 1 "" NA12156 nsv53273 12 40768966 40768966 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71851 M 24 "" nsv437751 12 40872908 40885389 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467632 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19094 nsv832388 12 41164595 41373336 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449800,nssv1449801 M 95 1 1 "" nsv522388 12 41172484 41176358 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695168 S 2026 1 0 "" nsv524513 12 41172484 41181668 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700457 S 2026 0 1 "" nsv832389 12 41289628 41460163 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449802 S 95 1 0 "" esv32880 12 41306841 41313692 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101240,essv96800,essv97902,essv93149,essv92952,essv93614,essv99655,essv97974 M 51 0 8 "" 21618,21659,21837,21863,21939,21972,22217,22259 nsv52801 12 41794045 41794045 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71379 M 24 "" nsv52968 12 42263728 42265827 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71546 M 24 "" nsv523305 12 42275083 42280252 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699045 S 2026 0 1 "" nsv518510 12 42369215 42391557 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694244 S 2026 1 0 "" nsv526719 12 42584684 42602029 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703059 S 2026 0 1 "" nsv832390 12 42604338 42798381 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449803 S 95 1 0 "" nsv832391 12 42680404 42838822 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449804 S 95 0 1 "" nsv522314 12 42757976 42773328 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695094 S 2026 0 1 "" nsv832393 12 42815673 42978681 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449805,nssv1449807 M 95 2 0 "" nsv686 12 42957507 42983177 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9023 S 9 0 1 "" NA12156 nsv520635 12 42993934 43007141 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697530 S 2026 0 1 "" nsv832394 12 43363840 43555572 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449808 S 95 0 1 "" nsv526438 12 43394451 43394747 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702741 S 2026 0 1 "" nsv687 12 43402131 43409297 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9024 S 9 1 0 "" NA12156 nsv527565 12 43606034 43652079 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704026 S 2026 0 1 "" dgv198n27 12 43639634 43675084 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv469366,nsv469365 M 1557 0 2 "" 1780862470_A,HGDP00828 nsv469367 12 43649812 43686881 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544255 S 1557 0 1 "" NINDS_219 nsv689 12 43865788 43899500 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1079 S 9 1 0 "" NA19240 nsv690 12 43960394 44005126 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9025 S 9 0 1 "" NA12156 nsv832395 12 44128032 44325564 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449809,nssv1449810 M 95 0 2 "" nsv508672 12 44170997 44217358 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620048,nssv617399,nssv618893 M 4 0 3 "" CHM,NA10860,NA15510 nsv691 12 44182562 44232722 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5418,nssv1080,nssv9836,nssv6502 M 9 0 4 "" NA12156,NA18507,NA19129,NA19240 nsv442647 12 44192107 44195804 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" esv2751099 12 44246385 44329900 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6988458,essv6985679,essv6981847 M 771 1 0 "" BEC_493 esv32607 12 44373697 44383494 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv95012,essv99501 M 51 2 0 "" 22231,22335 dgv508e1 12 44435605 44636158 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv12413,esv377 M 271 0 0 "" NA19238 nsv832396 12 44441691 44596850 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449811 S 95 0 1 "" nsv832397 12 44552257 44740000 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449812 S 95 0 1 "" nsv832398 12 44897959 45111797 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449813 S 95 1 0 "" nsv521192 12 44995518 45007086 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694423 S 2026 0 1 "" nsv692 12 45304739 45335762 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1082,nssv1995,nssv5419 M 9 0 3 "" NA18555,NA19129,NA19240 dgv26n6 12 45361618 45361981 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv53621,nsv52523 M 24 "" nsv693 12 45536405 45566786 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10862 S 9 1 0 "" NA18956 nsv694 12 45746983 45759649 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6503 S 9 0 1 "" NA12156 nsv832399 12 45789177 45975868 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449814 S 95 1 0 "" esv2751100 12 45827657 46032424 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6982220,essv6982219,essv6989592,essv6982221 M 771 0 1 "" BEC_404 nsv527663 12 45963217 45965615 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704136 S 2026 0 1 "" nsv522275 12 45994103 46004450 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695055 S 2026 0 1 "" nsv832400 12 46126515 46310872 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449815 S 95 1 0 "" nsv522914 12 46133227 46153777 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698575 S 2026 0 1 "" esv2751101 12 46227125 46413152 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6987667,essv6984742,essv6984743,essv6984744,essv6987668 M 771 1 0 "" SPC_173 nsv527728 12 46240864 46330773 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704210 S 2026 1 0 "" nsv53705 12 46312920 46312920 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv72283 M 24 "" nsv695 12 46329528 46374488 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9026 S 9 0 1 "" NA12156 nsv521329 12 46330278 46337723 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697936 S 2026 1 0 "" nsv518487 12 46337723 46344058 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695927 S 2026 0 1 "" nsv517899 12 46367806 46368749 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695308 S 2026 1 0 "" nsv696 12 46400230 46434803 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4022 S 9 1 0 "" NA12878 dgv94n21 12 46405829 46501447 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv527470,nsv524967 M 2026 0 2 "" nsv518315 12 46436019 46439262 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695746 S 2026 0 1 "" nsv832401 12 46633720 46764266 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449816 S 95 0 1 "" nsv519174 12 46646251 46651532 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696657 S 2026 0 1 "" nsv525456 12 46652716 46663236 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701584 S 2026 1 0 "" nsv519659 12 46652716 46675512 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696977 S 2026 0 1 "" dgv509e1 12 46715969 47111766 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv5418,esv516 M 271 0 0 "" NA18563 nsv508673 12 46776053 46853405 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617400 S 4 0 1 "" CHM nsv8971 12 46822793 47044768 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20523,nssv21547,nssv18520,nssv18731,nssv21047,nssv21548,nssv20764 M 31 1 6 Samples from several populations that are part of the HapMap project. "" NA07048,NA10839,NA11830,NA12155,NA12802,NA12872,NA18563 esv34439 12 46828024 47065829 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6979487,essv6979488,essv6979489,essv6979490 M 771 1 0 "" NA18563 dgv510e1 12 46833395 47111766 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv6199,essv4088 M 271 0 0 "" NA18563,NA18635 esv33956 12 46851910 46931828 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97516 S 51 0 1 "" 21616 nsv518743 12 46883774 46886787 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694269 S 2026 0 1 "" essv7243 12 46958573 46989789 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18635 esv34952 12 46958600 46989800 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6979818,essv6988250 M 771 0 1 "" NA18635 dgv199n27 12 46962050 46998134 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv469372,nsv469369,nsv469370 M 1557 0 3 "" HGDP01096,HGDP01099,HGDP01184 nsv832402 12 46973028 47137287 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449818 S 95 1 0 "" nsv53338 12 46994841 46996951 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71916 M 24 "" nsv437752 12 47008099 47027486 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467633 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18506 nsv438208 12 47011045 47020876 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470440,nssv470442 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA18506,NA18508 nsv510295 12 47170857 47176857 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621383,nssv624117 M 4 0 2 "" NA15510,NA18994 nsv697 12 47183738 47218732 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1083 S 9 1 0 "" NA19240 nsv438209 12 47345081 47357512 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470443,nssv470444 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA18506,NA18507 nsv519053 12 47351994 47365737 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696524 S 2026 0 1 "" nsv698 12 47475198 47508846 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5420 S 9 1 0 "" NA19129 nsv469373 12 47543059 47571657 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544260 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00721 nsv832404 12 47544827 47744822 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449821,nssv1449820,nssv1449819,nssv1449822 M 95 4 0 "" nsv700 12 47699585 47730192 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10863 S 9 1 0 "" NA18956 nsv518041 12 47904310 47931507 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695453 S 2026 0 1 "" nsv701 12 47906901 47931299 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2883 S 9 1 0 "" NA18555 nsv507642 12 47939951 47945951 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619071,nssv623108 M 4 2 0 "" NA10860,NA18994 nsv509466 12 47946904 47946904 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620967 S 4 1 0 "" NA15510 nsv832405 12 48006546 48197129 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449823 S 95 1 0 "" nsv832406 12 48146960 48348403 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449824 S 95 0 1 "" nsv518746 12 48157231 48210904 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696195 S 2026 0 1 "" nsv522972 12 48482661 48697098 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698642 S 2026 1 0 "" nsv832407 12 48529535 48698503 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449825 S 95 0 1 "" nsv525920 12 48571328 48591216 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702124 S 2026 0 1 "" nsv523899 12 48640704 48652567 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699742 S 2026 0 1 "" nsv437753 12 48740624 48748405 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467634 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19208 nsv53354 12 48855107 48855413 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71932 M 24 "" nsv702 12 48957137 49002201 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9027 S 9 0 1 "" NA12156 nsv469376 12 49079113 49142880 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544261 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00915 nsv703 12 49793477 49827966 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1084 S 9 1 0 "" NA19240 nsv704 12 49896307 49930454 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4023 S 9 1 0 "" NA12878 nsv469377 12 49977018 50020218 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544262 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00845 nsv832408 12 49982872 50157606 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449826 S 95 1 0 "" nsv52505 12 50083157 50083208 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71083 M 24 "" nsv519438 12 50124056 50186372 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv684820,nssv658470,nssv685479,nssv680012,nssv656203,nssv687928,nssv676734,nssv657658,nssv660120,nssv661832,nssv672171 M 2026 11 0 "" nsv705 12 50188043 50214863 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6504 S 9 1 0 "" NA12156 nsv706 12 50461726 50473400 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9029 S 9 0 1 "" NA12156 nsv53216 12 50514070 50514070 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71794 M 24 "" nsv527286 12 50573043 50600655 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703700 S 2026 0 1 "" nsv523741 12 50590666 50600655 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699557 S 2026 0 1 "" nsv707 12 50593228 50624380 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5421 S 9 1 0 "" NA19129 nsv708 12 50610941 50627869 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6505 S 9 0 1 "" NA12156 nsv525457 12 50635355 50671078 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701585 S 2026 0 1 "" nsv469378 12 50689377 50727817 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544263 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00857 nsv518451 12 50723758 50726016 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv684097,nssv656259 M 2026 0 2 "" nsv832409 12 50735433 50894118 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449827 S 95 0 1 "" nsv438210 12 50791226 50819085 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470445,nssv470446 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA18503,NA18505 nsv523062 12 50802618 50817836 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698748 S 2026 0 1 "" nsv818916 12 50802618 50830366 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417704 S 112 1 0 "" NA18999 dgv511e1 12 50849531 51071786 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv563,essv21776 M 271 0 0 "" NA12239 nsv469381 12 50875897 50891833 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544264 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00444 nsv7230 12 50931331 51011292 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9837,nssv1996 M 9 0 0 "" NA18507,NA18555 nsv510296 12 50937899 50943899 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621384 S 4 0 1 "" NA15510 essv22726 12 50962670 51071786 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12239 dgv70e55 12 50962670 51078200 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv2751104,esv2751105,esv35152,esv2751102,esv2751103 M 771 5 0 "" BEC_361,BEC_745,BEC_8,NA12239,SPC_140 nsv516938 12 50963976 51074279 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703104,nssv675578,nssv659892,nssv655061,nssv693628,nssv695650,nssv655081 M 2026 5 2 "" nsv818917 12 50977370 51068408 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418397 S 112 1 0 "" NA12239 dgv200n27 12 50977370 51075195 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv469389,nsv469388,nsv469385 M 1557 3 0 "" 1782681287_A,1798860306_A,NINDS_116 nsv832410 12 51001647 51187031 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449829,nssv1449830 M 95 2 0 "" nsv832411 12 51027854 51174131 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449833,nssv1449832,nssv1449831 M 95 0 3 "" nsv8972 12 51062509 51066930 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19222 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18942 nsv832412 12 51070257 51225503 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449834 S 95 0 1 "" nsv520797 12 51101732 51114706 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697617 S 2026 1 0 "" esv2751106 12 51114706 51150507 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6989413,essv6984130 M 771 0 1 "" BEC_783 dgv95n21 12 51151042 51169117 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv524862,nsv527439 M 2026 0 2 "" nsv832413 12 51155229 51188922 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449838,nssv1449837,nssv1449835,nssv1449836,nssv1449840 M 95 0 5 "" nsv709 12 51180286 51244513 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2884,nssv5422 M 9 2 0 "" NA18555,NA19129 nsv832415 12 51247614 51437351 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449841 S 95 0 1 "" nsv522631 12 51289223 51294320 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv706029 S 2026 0 1 "" nsv524563 12 51371139 51373716 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700517 S 2026 0 1 "" nsv516955 12 51372912 51373716 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv687359,nssv687207,nssv653722,nssv669997,nssv656115,nssv653500,nssv672700 M 2026 0 7 "" nsv528616 12 51436632 51448795 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705245 S 2026 0 1 "" nsv832416 12 51459707 51651633 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449842 S 95 0 1 "" nsv711 12 51521153 51553606 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5423 S 9 1 0 "" NA19129 nsv53037 12 51586050 51591321 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71615 M 24 "" nsv517066 12 51686445 52020773 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv663667,nssv657233,nssv687149,nssv681824,nssv675597,nssv693430,nssv672368,nssv660173,nssv691076,nssv674194,nssv682223,nssv679753,nssv653279,nssv689893,nssv653723,nssv652857,nssv661140,nssv655358,nssv665557,nssv657807,nssv691972,nssv666122,nssv652339,nssv667936,nssv693629,nssv683336,nssv692422,nssv661533,nssv703541,nssv662487,nssv670606,nssv655026,nssv684821,nssv692446,nssv694517,nssv658412,nssv670952,nssv674334,nssv692890,nssv663755,nssv667423,nssv699709,nssv672758,nssv669794,nssv669550,nssv657491,nssv677722,nssv668331,nssv677764 M 2026 0 49 "" nsv712 12 51751356 51784171 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6506 S 9 1 0 "" NA12156 nsv832417 12 51755925 51934282 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449843 S 95 1 0 "" nsv713 12 51798500 51840158 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2885,nssv9030 M 9 2 0 "" NA12156,NA18555 nsv469404 12 51804087 51907978 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544271 S 1557 0 1 "" NINDS_71 nsv52510 12 51872961 51873189 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71088 M 24 "" dgv27n6 12 51873415 51873761 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv52509,nsv52525 M 24 "" nsv52860 12 51876250 51876628 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71438 M 24 "" nsv52501 12 51876873 51877544 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71079 M 24 "" nsv52713 12 51970768 51970768 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71291 M 24 "" nsv714 12 52135220 52169210 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2886 S 9 1 0 "" NA18555 nsv53289 12 52214209 52214209 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71867 M 24 "" nsv526791 12 52241752 52380303 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703144 S 2026 1 0 "" nsv715 12 52252370 52262686 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9031 S 9 0 1 "" NA12156 dgv28n6 12 52531675 52531978 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv52862,nsv52704 M 24 "" nsv52676 12 52610582 52610582 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71254 M 24 "" dgv512e1 12 52633336 52820913 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv15041,essv20928,essv877,esv130 M 271 0 0 "" NA12801,NA19000,NA19129 nsv832418 12 52696607 52866711 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449844 S 95 0 1 "" nsv716 12 52721196 52753273 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1997 S 9 1 0 "" NA18555 nsv832419 12 52744094 52939207 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449845 S 95 0 1 "" nsv8973 12 52785827 52798431 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24018 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18517 nsv832420 12 52817323 52976848 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449846 S 95 0 1 "" nsv509467 12 52853668 52935649 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620968 S 4 1 0 "" NA15510 nsv520202 12 53026646 53035101 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv687022,nssv663068,nssv661710,nssv678294,nssv676793 M 2026 0 5 "" nsv717 12 53121029 53140710 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9032 S 9 0 1 "" NA12156 nsv508674 12 53126177 53202263 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618894 S 4 0 1 "" NA10860 nsv832421 12 53202964 53371669 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449848,nssv1449847 M 95 2 0 "" nsv525674 12 53217880 53217973 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701831 S 2026 0 1 "" nsv516882 12 53535006 53603053 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv681327,nssv654665 M 2026 2 0 "" nsv522483 12 53793732 53796116 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705850 S 2026 0 1 "" nsv507643 12 53839311 53845311 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617831 S 4 1 0 "" CHM nsv718 12 53992623 54032468 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5424,nssv1085,nssv4024,nssv6507 M 9 4 0 "" NA12156,NA12878,NA19129,NA19240 nsv82 12 53995934 54011707 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv82 S 1 1 0 "" NA15510 nsv438211 12 54001143 54011957 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470447,nssv470448 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA18506,NA18508 nsv509469 12 54007635 54034261 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620969,nssv619609 M 4 2 0 "" NA10860,NA15510 nsv52988 12 54013482 54014455 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71566 M 24 "" nsv832422 12 54118477 54287319 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449852,nssv1449853,nssv1449849 M 95 0 3 "" nsv437144 12 54147173 54152228 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467025 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA12802 nsv526676 12 54206581 54207285 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703008 S 2026 0 1 "" nsv469409 12 54262108 54265237 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544273 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01301 nsv525231 12 54363186 54410599 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701320 S 2026 0 1 "" nsv832423 12 54367089 54539965 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449854 S 95 1 0 "" nsv469410 12 54384305 54457160 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544274 S 1557 0 1 "" 1780862573_A nsv507644 12 54470391 54476391 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623109,nssv617832,nssv620503,nssv619072 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv719 12 54532672 54577079 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1998 S 9 0 1 "" NA18555 nsv508675 12 54535865 54546775 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622657 S 4 0 1 "" NA18994 nsv832424 12 54561493 54753184 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449855 S 95 0 1 "" nsv832427 12 54678812 54799041 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449856,nssv1449857 M 95 0 2 "" nsv720 12 54860977 54893599 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5425 S 9 1 0 "" NA19129 nsv526706 12 55248199 55274609 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703045 S 2026 1 0 "" nsv525202 12 55290935 55300111 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701284 S 2026 0 1 "" nsv438212 12 55300111 55301400 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470449,nssv470450 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA12707,NA12717 nsv438213 12 55606077 55610763 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470451,nssv470453 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA18503,NA19103 nsv832428 12 55626876 55821961 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449858 S 95 1 0 "" nsv516039 12 55628455 55663776 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv660157,nssv674361,nssv665862 M 2026 0 3 "" nsv722 12 55710216 55722973 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10865 S 9 1 0 "" NA18956 dgv96n21 12 55819249 55923860 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv525873,nsv518980 M 2026 0 2 "" nsv519293 12 55869939 55923860 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv683823,nssv655228,nssv661597,nssv695975 M 2026 0 4 "" nsv723 12 56001140 56032327 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10866 S 9 1 0 "" NA18956 nsv516655 12 56049787 56097681 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv684822,nssv695292,nssv669923,nssv675598 M 2026 3 1 "" dgv513e1 12 56116000 56288135 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv14160,essv2606,essv12222,essv1754,essv2457,essv5579,essv12603,essv7556,essv9214,essv12799,essv8804,essv15049,esv309,essv15743,essv9042,essv5397,essv1818,essv16685,essv14446,essv4250,essv10445,essv14282,essv8615,essv10316,essv15813,essv9393,essv13879,essv10578,essv16939,essv9116,essv17129,essv14066,essv9825,essv14541,essv13014,essv1130,essv5465,essv2546 M 271 0 0 "" NA18506,NA18508,NA18515,NA18529,NA18545,NA18563,NA18603,NA18632,NA18853,NA18854,NA18859,NA18860,NA18861,NA18863,NA18964,NA18976,NA18990,NA18997,NA18999,NA19003,NA19098,NA19101,NA19120,NA19128,NA19129,NA19131,NA19132,NA19140,NA19142,NA19144,NA19171,NA19194,NA19201,NA19202,NA19223,NA19239,NA19240 nsv469411 12 56130316 56207455 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544275 S 1557 0 1 "" NINDS_70 nsv8974 12 56139046 56152148 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26011 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19221 nsv724 12 56206732 56249804 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4026,nssv1999 M 9 2 0 "" NA12878,NA18555 nsv8975 12 56229263 56231510 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21519 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA12740 nsv725 12 56252816 56280075 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4628 S 9 0 1 "" NA19129 nsv53146 12 56268709 56269968 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71724 M 24 "" nsv508676 12 56331403 56384805 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622658 S 4 0 1 "" NA18994 nsv510601 12 56416565 56478192 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622659 S 4 0 1 "" NA18994 nsv726 12 56497446 56532162 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4027 S 9 1 0 "" NA12878 nsv727 12 56549866 56584743 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1086 S 9 1 0 "" NA19240 nsv523853 12 56636898 56672989 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699688 S 2026 1 0 "" nsv728 12 56744619 56785805 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9838,nssv10867,nssv2000,nssv10903,nssv1087,nssv6508,nssv5426 M 9 7 0 "" NA12156,NA15510,NA18507,NA18555,NA18956,NA19129,NA19240 nsv509470 12 56750014 56759769 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620970,nssv623628 M 4 2 0 "" NA15510,NA18994 nsv511018 12 56750014 56768441 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618670 S 4 0 0 "" CHM nsv83 12 56754551 56760334 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv83 S 1 1 0 "" NA15510 nsv510297 12 56756769 56762769 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622213 S 4 0 1 "" NA10860 nsv729 12 56776361 56821733 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6509 S 9 0 1 "" NA12156 nsv527323 12 56846693 56854644 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703748 S 2026 1 0 "" nsv730 12 56985059 57045363 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5427,nssv10868,nssv9839,nssv9948,nssv6510,nssv1088,nssv10905 M 9 0 6 "" NA12156,NA15510,NA18507,NA18956,NA19129,NA19240 nsv8976 12 57004218 57020779 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20004,nssv20396,nssv23171,nssv20553,nssv20794,nssv20718,nssv21549 M 31 7 0 Samples from several populations that are part of the HapMap project. "" NA07048,NA10839,NA12740,NA18564,NA18975,NA19007,NA19240 nsv84 12 57006943 57032578 CNV Loss Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv84 S 1 0 1 "" NA15510 nsv510602 12 57008716 57057209 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618895,nssv622660,nssv620049 M 4 0 3 "" NA10860,NA15510,NA18994 nsv731 12 57104480 57137085 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1089 S 9 1 0 "" NA19240 nsv510298 12 57109770 57115770 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621385,nssv622214,nssv624118 M 4 0 3 "" NA10860,NA15510,NA18994 nsv832429 12 57166978 57340396 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449859 S 95 0 1 "" dgv514e1 12 57308996 57609312 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv850,essv22362 M 271 0 0 "" NA12875 nsv818918 12 57475381 57509946 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415786 S 112 1 0 "" NA12875 essv24604 12 57477996 57520339 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12875 nsv438214 12 57502971 57518064 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470460,nssv470455,nssv470454,nssv470458,nssv470456,nssv470461,nssv470459,nssv470464,nssv470457,nssv470462 M 269 0 10 Samples from several populations that are part of the HapMap project. "" NA18500,NA18501,NA18506,NA18507,NA18870,NA18872,NA19101,NA19103,NA19119,NA19120 nsv733 12 57596554 57653627 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1090,nssv9033,nssv5428 M 9 3 0 "" NA12156,NA19129,NA19240 nsv526485 12 57699069 57708935 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702794 S 2026 0 1 "" nsv522058 12 57702994 57708935 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694829 S 2026 0 1 "" nsv524903 12 57707186 57708935 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700914 S 2026 0 1 "" nsv469412 12 57790867 57828384 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544276 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00552 nsv832430 12 57839078 57944600 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449860 S 95 0 1 "" nsv520767 12 57957655 58068495 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697599 S 2026 1 0 "" nsv522193 12 58038750 58043812 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694968 S 2026 0 1 "" nsv734 12 58063941 58096598 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10869 S 9 1 0 "" NA18956 nsv735 12 58085499 58168983 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6511,nssv9034 M 9 0 1 "" NA12156 nsv469413 12 58142428 58203034 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544277 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00210 dgv39n17 12 58221376 58238640 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437149,nsv437148,nsv437150,nsv437145,nsv437754 M 60 0 5 "" NA06991,NA10831,NA10835,NA12864,NA18857 nsv438216 12 58222193 58230898 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470467,nssv470470,nssv470469,nssv470475,nssv470471,nssv470472,nssv470465,nssv470466,nssv470476,nssv470468,nssv470473 M 269 0 11 Samples from several populations that are part of the HapMap project. "" NA06985,NA06991,NA10831,NA10835,NA12155,NA12248,NA12864,NA12872,NA18965,NA18971,NA18997 esv2751107 12 58538267 58639800 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6984342,essv6987565 M 771 1 0 "" BEC_692 nsv516042 12 58640574 58745637 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv661223,nssv691552,nssv665863 M 2026 0 3 "" nsv511019 12 58795890 58834904 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622397,nssv624337 M 4 0 0 "" NA10860,NA18994 nsv507645 12 58822403 58828403 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620504 S 4 1 0 "" NA15510 nsv832431 12 58912559 59095500 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449861 S 95 1 0 "" nsv8977 12 59039220 59044846 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23199,nssv21299 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA19173,NA19240 nsv437755 12 59039374 59044197 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467636 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19240 nsv832432 12 59087886 59255174 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449863 S 95 0 1 "" esv32810 12 59159790 59165069 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93777,essv99923 M 51 1 1 "" 21972,22086 nsv469414 12 59253264 59314484 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544278 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01031 nsv832433 12 59396761 59583586 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449864 S 95 0 1 "" nsv526849 12 59440276 59539752 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703207 S 2026 1 0 "" nsv818919 12 59595154 59602876 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417585 S 112 1 0 "" NA18972 nsv469415 12 59602058 59677465 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544279 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00047 nsv528557 12 59716565 59720274 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705172 S 2026 0 1 "" nsv509471 12 59730110 59754986 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618093,nssv620971 M 4 2 0 "" CHM,NA15510 nsv507646 12 59736507 59742507 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623110 S 4 1 0 "" NA18994 dgv515e1 12 59797263 59898818 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv9262,esv1169 M 271 0 0 "" NA19137 nsv507647 12 59802439 59808439 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619073,nssv623111 M 4 2 0 "" NA10860,NA18994 nsv8978 12 59809393 59820361 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18550 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA12802 nsv818920 12 59816779 59879553 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416967 S 112 0 1 "" NA19137 esv34273 12 59846251 59889800 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6978375,essv6986597,essv6978376 M 771 1 0 "" NA19012 essv3928 12 59846251 59898285 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18970 essv1541 12 59868562 59898818 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19012 nsv736 12 59964351 59995866 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10870 S 9 1 0 "" NA18956 dgv516e1 12 60060452 60082655 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv25127,esv1248 M 271 0 0 "" NA10856 nsv832434 12 60110186 60319893 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449865 S 95 1 0 "" nsv520898 12 60365037 60401432 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697676 S 2026 1 0 "" nsv442272 12 60488837 60497087 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv516147 12 60557385 60558836 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv674274,nssv683430,nssv670025,nssv666472,nssv691182,nssv674630 M 2026 0 6 "" nsv53083 12 60621488 60627549 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71661 M 24 "" nsv737 12 60654154 60687700 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9035 S 9 1 0 "" NA12156 nsv832435 12 60693267 60888102 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449867,nssv1449866 M 95 2 0 "" nsv738 12 61015037 61050361 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4028 S 9 1 0 "" NA12878 nsv469417 12 61037509 61088910 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544281 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00461 nsv821671 12 61080571 61294231 CNV Loss Sebat_et_al_2004 15273396 ROMA Custom Nimblegen photoprint 85000 probe ROMA oligo array nssv1421245 S 31 0 1 "" nsv739 12 61152602 61187718 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1092 S 9 1 0 "" NA19240 nsv469418 12 61179466 61245404 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544282 S 1557 0 1 "" 1780862194_A nsv740 12 61276848 61288601 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9036 S 9 1 0 "" NA12156 nsv53806 12 61316789 61319671 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv72384 M 24 "" nsv741 12 61324522 61351113 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9037 S 9 0 1 "" NA12156 nsv527742 12 61364450 61370579 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704227 S 2026 0 1 "" nsv516508 12 61366498 61370579 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv682570,nssv670448,nssv668753,nssv688786,nssv670876 M 2026 0 5 "" nsv524555 12 61366498 61372858 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700509 S 2026 1 0 "" nsv53660 12 61518669 61518996 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv72238 M 24 "" esv2751108 12 61732200 61790219 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6988806,essv6984458,essv6984459,essv6984460 M 771 1 0 "" BEC_708 nsv469592 12 61772777 61965406 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649707 M 265 0 6 Samples from several populations that are part of the HapMap project. "" nsv832436 12 61790260 61944379 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449868 S 95 1 0 "" nsv832438 12 61857919 62032094 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449869 S 95 1 0 "" nsv8980 12 61861674 61866178 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21329 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19173 nsv832439 12 61974350 62151493 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449870 S 95 1 0 "" nsv742 12 62016212 62048863 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6512 S 9 1 0 "" NA12156 esv2422401 12 62064794 62303324 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161331 S 181 1 0 "" ND05052 nsv832440 12 62114074 62283191 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449871 S 95 0 1 "" nsv469419 12 62153194 62202949 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544283 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01400 nsv524092 12 62155425 62159243 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699965 S 2026 0 1 "" dgv201n27 12 62181589 62426038 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv469421,nsv469420,nsv469422,nsv469423 M 1557 4 0 "" HGDP00520,HGDP00708,HGDP00726,HGDP00739 nsv8981 12 62183601 62192660 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21578,nssv21579 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA12155,NA12740 essv25168 12 62188068 62438880 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA11840 dgv517e1 12 62188068 62538439 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv630,essv19452,essv21416 M 271 0 0 "" NA11840,NA12717 dgv71e55 12 62188218 62406115 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv34725,esv2751109 M 771 2 0 "" BEC_362,NA12717 nsv516374 12 62202949 62454380 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv661067,nssv668471,nssv666691,nssv657234,nssv664451,nssv685289,nssv664755,nssv666431,nssv662269,nssv657041,nssv678139,nssv681868,nssv674713,nssv681154,nssv691370,nssv679373,nssv698993,nssv668583,nssv661402,nssv674998,nssv652455,nssv672728,nssv691220,nssv654666,nssv676576,nssv689484,nssv689169,nssv689718,nssv665724,nssv688150,nssv672104,nssv681594,nssv677523,nssv663317,nssv665820,nssv691371,nssv692026,nssv662651,nssv652842,nssv666779,nssv671392,nssv682416,nssv676634,nssv682726,nssv670731,nssv700589,nssv692868,nssv685198,nssv667312,nssv689394,nssv667892,nssv692114,nssv669528,nssv654606,nssv653280,nssv692669 M 2026 40 16 "" nsv8982 12 62216521 62218607 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26031 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19221 esv33383 12 62217008 62427366 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97055,essv93762,essv100321,essv98424 M 51 1 3 "" 21817,21972,22300,22352 nsv8983 12 62225477 62347631 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20656 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18552 nsv442273 12 62225991 62406909 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" esv2751110 12 62226000 62560947 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6988840,essv6987660,essv6984722 M 771 1 0 "" SPC_169 nsv469424 12 62226007 62369568 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544288 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00683 dgv202n27 12 62226007 62426038 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv469432,nsv469426,nsv469447,nsv469436,nsv469428,nsv469431,nsv469425,nsv469446,nsv469435,nsv469450,nsv469433,nsv469443,nsv469444,nsv469448,nsv469429,nsv469437,nsv469430,nsv469434 M 1557 18 0 "" 1780854176_A,1780854196_A,1780854219_A,1780862197_A,1780862547_A,1782681142_A,HGDP00173,HGDP00475,HGDP00526,HGDP00632,HGDP00667,HGDP00693,HGDP00906,HGDP00907,HGDP00917,HGDP00943,HGDP01074,HGDP01301 dgv203n27 12 62226007 62426038 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv469442,nsv469441,nsv469439,nsv469445,nsv469440 M 1557 0 5 "" 1780862565_A,1782681316_A,HGDP00039,NINDS_205,NINDS_7 esv2751111 12 62261464 62406115 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6990042,essv6984920 M 771 0 1 "" SPC_194 essv18897 12 62261464 62431798 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12717 dgv204n27 12 62338144 62404825 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv469451,nsv469453 M 1557 0 2 "" HGDP00237,NINDS_53 nsv469452 12 62338144 62415375 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544316 S 1557 1 0 "" NINDS_125 nsv745 12 62343342 62374404 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5429 S 9 1 0 "" NA19129 nsv832441 12 62350043 62538439 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449872 S 95 0 1 "" nsv469454 12 62368487 62422121 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544318 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01065 nsv8984 12 62419885 62425202 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24318 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18860 nsv746 12 62475711 62521233 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6513 S 9 0 1 "" NA12156 nsv832442 12 62514338 62729038 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449874 S 95 1 0 "" nsv507648 12 62585554 62591554 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617833,nssv619075 M 4 2 0 "" CHM,NA10860 nsv519341 12 62621845 62622045 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696801 S 2026 0 1 "" nsv747 12 62677839 62710265 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5430 S 9 0 1 "" NA19129 nsv437756 12 62678767 62698137 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467637 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19129 nsv515618 12 62685998 62690201 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv680037,nssv664120,nssv680423,nssv678786 M 2026 0 4 "" nsv442274 12 62687505 62691702 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv438217 12 62688136 62690201 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470477,nssv470478 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA19127,NA19129 esv33314 12 62743742 62744047 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98718 S 51 0 1 "" 21606 nsv469456 12 62996986 63035639 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544319 S 1557 0 1 "" 1780854459_A nsv517246 12 63007487 63010798 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv664684,nssv654116 M 2026 0 2 "" nsv832443 12 63165123 63343532 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449875 S 95 0 1 "" nsv832444 12 63267751 63454739 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449876 S 95 0 1 "" nsv515833 12 63304111 63304459 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv669864,nssv671468,nssv656857,nssv656965,nssv661671,nssv679189,nssv664942,nssv680038,nssv684564,nssv677018,nssv680878,nssv686860 M 2026 0 12 "" nsv818921 12 63304111 63304459 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418199,nssv1418200 M 112 0 2 "" NA19143,NA19145 nsv438218 12 63304111 63323750 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470479,nssv470480 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA19143,NA19145 nsv524627 12 63368597 63377298 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700590 S 2026 0 1 "" nsv52978 12 63520076 63525773 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71556 M 24 "" nsv748 12 63592478 63625960 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1093 S 9 1 0 "" NA19240 nsv469458 12 63677987 63823937 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544320 S 1557 1 0 "" NINDS_198 nsv510299 12 63736281 63742281 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618366,nssv621386,nssv622215,nssv624119 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv832445 12 63787154 63973778 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449877 S 95 1 0 "" nsv522671 12 63924685 63926294 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv706076 S 2026 0 1 "" nsv749 12 63973341 63976152 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5432 S 9 1 0 "" NA19129 nsv750 12 64119644 64165347 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6514 S 9 0 1 "" NA12156 nsv751 12 64138725 64172039 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4029 S 9 1 0 "" NA12878 nsv752 12 64177908 64186235 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4629 S 9 0 1 "" NA19129 nsv753 12 64195337 64222998 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9039 S 9 0 1 "" NA12156 nsv510300 12 64322210 64328210 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624120 S 4 0 1 "" NA18994 dgv97n21 12 64401468 64417330 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv518448,nsv526184 M 2026 0 2 "" nsv515887 12 64407529 64417330 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv686736,nssv675280,nssv658361,nssv683533,nssv679871,nssv674362,nssv665515,nssv674453,nssv665144 M 2026 0 9 "" nsv507649 12 64500740 64506740 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619076 S 4 1 0 "" NA10860 nsv832446 12 64680130 64787751 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449879,nssv1449878 M 95 1 1 "" nsv526076 12 64827573 64832367 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702317 S 2026 0 1 "" nsv832447 12 65072081 65276296 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449880 S 95 1 0 "" nsv518043 12 65102406 65102768 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695454 S 2026 0 1 "" nsv469459 12 65140621 65236556 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544321 S 1557 1 0 "" 1782681262_A nsv522810 12 65145843 65146355 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698456 S 2026 0 1 "" nsv832449 12 65172086 65356220 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449881 S 95 1 0 "" esv33058 12 65181676 65197429 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv94440,essv96907 M 51 0 2 "" 21808,21817 nsv8985 12 65191605 65193019 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22983 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18504 dgv518e1 12 65191672 65266447 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv20512,esv1300 M 271 0 0 "" NA12716 nsv518007 12 65208873 65221347 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695420 S 2026 0 1 "" esv34782 12 65219809 65257665 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6978817,essv6988054 M 771 0 1 "" NA12716 nsv442275 12 65249567 65257291 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv53367 12 65285113 65290251 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71945 M 24 "" nsv469461 12 65293337 65324862 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544323 S 1557 0 1 "" 1788485588_A nsv527057 12 65335516 65337492 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703434 S 2026 0 1 "" nsv53335 12 65403275 65403357 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71913 M 24 "" nsv523387 12 65521240 65524668 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699136 S 2026 0 1 "" nsv754 12 65588927 65609827 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10871 S 9 1 0 "" NA18956 nsv521008 12 65591544 65608881 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697733 S 2026 0 1 "" nsv525987 12 65623079 65680675 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702209 S 2026 1 0 "" nsv53199 12 65919174 65919174 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71777 M 24 "" nsv525023 12 65959137 65994936 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701062 S 2026 0 1 "" nsv756 12 65989854 66031010 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9040 S 9 0 1 "" NA12156 nsv757 12 66007517 66041452 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1094 S 9 1 0 "" NA19240 nsv52972 12 66213617 66214388 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71550 M 24 "" nsv519668 12 66273454 66273897 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv687558,nssv657473 M 2026 0 2 "" nsv528191 12 66934584 66940909 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704748 S 2026 0 1 "" nsv507650 12 66944044 66950044 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620505,nssv623112 M 4 2 0 "" NA15510,NA18994 nsv510301 12 67041398 67047398 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624121 S 4 0 1 "" NA18994 nsv521035 12 67052353 67100206 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697747 S 2026 0 1 "" nsv758 12 67124407 67157408 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4030 S 9 1 0 "" NA12878 nsv522941 12 67177243 67467110 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698605 S 2026 1 0 "" nsv510302 12 67402062 67408062 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624122 S 4 0 1 "" NA18994 nsv759 12 67413689 67458721 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9041 S 9 0 1 "" NA12156 nsv53581 12 67461119 67461172 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv72159 M 24 "" nsv53687 12 67467904 67475248 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv72265 M 24 "" nsv52755 12 67542043 67542784 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71333 M 24 "" nsv523088 12 67597320 67605055 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698780 S 2026 0 1 "" nsv523272 12 67605055 67610710 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699006 S 2026 0 1 "" nsv760 12 67683818 67738565 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5433,nssv4031 M 9 2 0 "" NA12878,NA19129 nsv522348 12 67808455 67814045 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695128 S 2026 0 1 "" dgv5e24 12 67961003 67961704 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH esv2750620,esv2750489,esv2750742 M 51 0 3 "" 21721,21841,22371 nsv761 12 68211796 68223114 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10872 S 9 1 0 "" NA18956 nsv524127 12 68308963 68309685 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700005 S 2026 1 0 "" nsv507651 12 68338396 68344396 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620507,nssv617834,nssv619077,nssv623113 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv52529 12 68472621 68476377 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71107 M 24 "" nsv507652 12 68528268 68534268 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619078 S 4 1 0 "" NA10860 nsv507653 12 68615561 68621561 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620508 S 4 1 0 "" NA15510 nsv510303 12 68694984 68700984 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618367 S 4 0 1 "" CHM nsv762 12 68716037 68749258 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5434 S 9 1 0 "" NA19129 nsv529039 12 68716731 68719461 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705752 S 2026 0 1 "" nsv515829 12 68727252 68856483 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv688258,nssv664914 M 2026 0 2 "" nsv442276 12 68797034 68805714 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv763 12 68894143 68916565 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9042 S 9 0 1 "" NA12156 nsv469463 12 69085071 69120135 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544324 S 1557 1 0 "" NINDS_58 nsv764 12 69112295 69145176 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6515 S 9 1 0 "" NA12156 nsv8986 12 69138649 69215012 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23851,nssv24045,nssv20583,nssv23893,nssv21359,nssv18580,nssv23227,nssv21107,nssv19652,nssv20436,nssv23011,nssv20686,nssv26051,nssv20034,nssv20716,nssv22018,nssv24134,nssv21015,nssv20824,nssv20570 M 31 18 1 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10863,NA12802,NA18502,NA18504,NA18517,NA18537,NA18552,NA18563,NA18853,NA18972,NA18975,NA19132,NA19144,NA19173,NA19221,NA19240 nsv469464 12 69143357 69188879 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544325 S 1557 0 1 "" NINDS_83 dgv40n17 12 69158125 69165667 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437152,nsv437153 M 60 0 2 "" NA10847,NA10851 nsv437151 12 69158125 69168994 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467032 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA10846 nsv515985 12 69158125 69170763 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv679795,nssv678295,nssv684453,nssv652653,nssv674454,nssv683102,nssv685742,nssv691791,nssv679124,nssv691513,nssv692145,nssv693279,nssv673633,nssv678140,nssv689170,nssv675924,nssv676794,nssv674656,nssv682169,nssv676982,nssv676295,nssv688392,nssv651966,nssv651865,nssv675402,nssv676356,nssv670996,nssv654069,nssv676577,nssv659866,nssv689142,nssv656227,nssv689355,nssv652321,nssv670877,nssv663335,nssv656246,nssv654033,nssv675293,nssv686083,nssv652375,nssv678936,nssv705469,nssv669062,nssv686017,nssv668382,nssv665259,nssv686050,nssv691534,nssv673615,nssv660013,nssv664522,nssv697421,nssv661558,nssv683534,nssv670953,nssv680853,nssv652853,nssv676444,nssv683015,nssv668243,nssv665798,nssv684249,nssv679150,nssv652011,nssv668128,nssv652133,nssv653427,nssv694028,nssv669423,nssv680765,nssv686033,nssv679190,nssv651978,nssv653660,nssv687982,nssv686257,nssv653405,nssv670798,nssv655208 M 2026 3 77 "" nsv442649 12 69158942 69164294 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv507654 12 69159382 69165382 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620509 S 4 1 0 "" NA15510 nsv818923 12 69160993 69162296 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416003,nssv1418021,nssv1417462,nssv1418398,nssv1418022,nssv1416002,nssv1416001,nssv1418399 M 112 0 8 "" NA07348,NA07357,NA10847,NA12146,NA12740,NA12750,NA12751,NA18960 nsv438219 12 69160993 69163283 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470483,nssv470488,nssv470482,nssv470486,nssv470484,nssv470489,nssv470481,nssv470487 M 269 0 8 Samples from several populations that are part of the HapMap project. "" NA10846,NA10847,NA10851,NA10856,NA12056,NA12145,NA12146,NA12751 esv32743 12 69161518 69399479 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100873,essv98141,essv96946,essv95600,essv93611,essv97158,essv99749,essv93306,essv98087,essv100381,essv96253 M 51 11 0 "" 21656,21772,21817,21841,21972,22075,22086,22170,22259,22300,22371 nsv509472 12 69286903 69333590 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620973 S 4 1 0 "" NA15510 nsv518144 12 69309150 69314127 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695565 S 2026 1 0 "" nsv518982 12 69329521 69337039 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696450 S 2026 0 1 "" nsv53686 12 69495174 69498280 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv72264 M 24 "" nsv765 12 69614902 69640122 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9840,nssv5435,nssv1095,nssv4032 M 9 4 0 "" NA12878,NA18507,NA19129,NA19240 nsv519696 12 69718435 69719560 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv674160,nssv657610 M 2026 0 2 "" nsv832450 12 69726624 69911166 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449882 S 95 1 0 "" nsv507655 12 69767357 69773357 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617835,nssv620510 M 4 2 0 "" CHM,NA15510 nsv442277 12 69785308 69796518 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv510304 12 69886755 69892755 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618368,nssv622216 M 4 0 2 "" CHM,NA10860 nsv767 12 70082471 70119264 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9043 S 9 0 1 "" NA12156 nsv832451 12 70264599 70486128 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449883 S 95 0 1 "" nsv524634 12 70377292 70398867 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700599 S 2026 0 1 "" dgv519e1 12 70388731 70594440 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv5556,esv541 M 271 0 0 "" NA18529 esv35030 12 70459000 70559100 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6979324,essv6979323 M 771 1 0 "" NA18529 essv4115 12 70459038 70558246 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18529 nsv818924 12 70468172 70566851 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417101 S 112 1 0 "" NA18529 nsv8987 12 70473883 70477100 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20613,nssv20935,nssv22048,nssv20600,nssv20466,nssv19252,nssv20064,nssv23039,nssv23920,nssv20456,nssv24344,nssv23878,nssv21137 M 31 0 13 Samples from several populations that are part of the HapMap project. "" NA07048,NA10863,NA18502,NA18504,NA18563,NA18853,NA18860,NA18942,NA18975,NA18980,NA19007,NA19132,NA19144 nsv8988 12 70529317 70534876 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24370 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18860 nsv518498 12 70593883 70795046 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695939 S 2026 0 1 "" nsv768 12 70733295 70762527 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1096 S 9 1 0 "" NA19240 esv2422452 12 70772200 71461848 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161312 S 181 1 0 "" ND01693 nsv769 12 70812699 70857923 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9044 S 9 0 1 "" NA12156 nsv832452 12 70871238 71050762 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449885 S 95 1 0 "" nsv770 12 70902104 70946777 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9045 S 9 0 1 "" NA12156 nsv469465 12 70942192 71545381 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544326 S 1557 1 0 "" NINDS_198 nsv771 12 70988032 71021287 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9046 S 9 1 0 "" NA12156 nsv832453 12 71064325 71253094 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449890,nssv1449887,nssv1449898,nssv1449886,nssv1449894,nssv1449889,nssv1449897,nssv1449896,nssv1449888,nssv1449899,nssv1449891,nssv1449893,nssv1449892 M 95 1 12 "" nsv772 12 71096169 71138463 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9048 S 9 0 1 "" NA12156 nsv521839 12 71113300 71126089 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694612 S 2026 0 1 "" nsv469466 12 71116708 71171821 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544327 S 1557 0 1 "" NINDS_183 nsv818925 12 71135298 71136703 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417063 S 112 0 1 "" NA07000 nsv832454 12 71227065 71367447 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449900 S 95 1 0 "" dgv520e1 12 71276974 71537376 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv739,essv1236 M 271 0 0 "" NA18995 nsv8989 12 71359585 71361193 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24072 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18517 esv34457 12 71368700 71518607 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6978272,essv6987362,essv6989011,essv6978271 M 771 0 1 "" NA18995 essv2360 12 71368737 71494315 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18995 nsv8993 12 71376546 71394384 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21167 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18563 nsv525560 12 71415853 71427019 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701699 S 2026 0 1 "" nsv52794 12 71431017 71434494 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71372 M 24 "" nsv519510 12 71638697 71650107 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696892 S 2026 0 1 "" dgv521e1 12 71660953 71703530 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv8013,esv893 M 271 0 0 "" NA18871 nsv832455 12 71667769 71808892 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449901 S 95 1 0 "" nsv528157 12 71678350 71698489 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704705 S 2026 0 1 "" nsv773 12 71730160 71773190 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9049 S 9 0 1 "" NA12156 nsv774 12 71855349 71889982 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2887 S 9 1 0 "" NA18555 nsv832456 12 71906686 72062213 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449902,nssv1449903 M 95 2 0 "" nsv525883 12 71956122 71980950 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702083 S 2026 0 1 "" nsv469467 12 71971593 72024082 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544328 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00157 nsv832457 12 72070855 72298253 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449904,nssv1449905 M 95 2 0 "" nsv832458 12 72171596 72361758 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449907 S 95 0 1 "" nsv442278 12 72277693 72283646 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv818926 12 72277909 72278941 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418126,nssv1418137 M 112 0 2 "" NA06991,NA06993 nsv510305 12 72347555 72353555 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618369,nssv624123 M 4 0 2 "" CHM,NA18994 nsv469468 12 72358536 72424867 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544329 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00336 nsv437758 12 72493662 72503163 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467639 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19240 nsv522394 12 72561457 72647245 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695175 S 2026 0 1 "" nsv528259 12 72589141 72647245 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704825 S 2026 0 1 "" nsv526601 12 72593807 72691303 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702921 S 2026 0 1 "" nsv469470 12 72815097 72882519 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544330 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00133 nsv775 12 72847101 72875146 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5436 S 9 1 0 "" NA19129 nsv520257 12 72876623 72967266 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697311 S 2026 1 0 "" nsv469472 12 72938064 72976559 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544332 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00106 nsv469473 12 72962648 72999163 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544333 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00963 nsv523765 12 72967266 73035743 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699586 S 2026 1 0 "" nsv469474 12 73136950 73174367 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544334 S 1557 0 1 "" 1780862459_A dgv205n27 12 73144224 73208990 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv469476,nsv469475 M 1557 0 2 "" 1780862109_A,1780862310_A nsv53015 12 73251200 73251308 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71593 M 24 "" nsv832460 12 73369230 73546994 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449908 S 95 1 0 "" dgv522e1 12 73396068 73500176 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv12918,esv962 M 271 0 0 "" NA19094 nsv524456 12 73448424 73692224 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700389 S 2026 1 0 "" nsv776 12 73459532 73492150 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5437 S 9 1 0 "" NA19129 nsv469477 12 73471914 73491371 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544337 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00964 nsv510603 12 73553542 73584794 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622661 S 4 0 1 "" NA18994 nsv832461 12 73566240 73719369 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449909 S 95 1 0 "" nsv522290 12 73621294 73800890 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695072 S 2026 1 0 "" nsv832462 12 73748681 73933838 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449910 S 95 1 0 "" nsv519821 12 73812710 73816018 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697068 S 2026 0 1 "" dgv98n21 12 73933055 74027150 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv520424,nsv526556 M 2026 2 0 "" nsv520316 12 74027150 74039510 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv662857,nssv693280 M 2026 0 2 "" nsv832463 12 74422818 74602970 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449911 S 95 1 0 "" nsv521900 12 74498650 74502021 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694671 S 2026 0 1 "" nsv519546 12 74533810 74541673 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694334 S 2026 0 1 "" nsv53801 12 74585199 74585511 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv72379 M 24 "" nsv527391 12 74690960 74694839 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703826 S 2026 0 1 "" nsv518190 12 74690960 74707521 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695613 S 2026 0 1 "" nsv520195 12 75182828 75412415 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv663698,nssv693371,nssv661598,nssv691259,nssv682197 M 2026 5 0 "" nsv778 12 75470657 75504982 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1097 S 9 1 0 "" NA19240 nsv779 12 75790127 75819580 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10873 S 9 1 0 "" NA18956 nsv469479 12 75821477 75885549 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544338 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00098 nsv780 12 76067661 76092534 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9050 S 9 0 1 "" NA12156 nsv519103 12 76109691 76111512 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696579 S 2026 0 1 "" nsv519280 12 76152920 76189296 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696763 S 2026 0 1 "" nsv832464 12 76257661 76403522 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449912 S 95 1 0 "" dgv41n17 12 76399540 76407675 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437760,nsv437759 M 60 0 2 "" NA19154,NA19194 nsv832465 12 76508098 76707824 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449914,nssv1449913 M 95 2 0 "" esv33056 12 76535245 76571911 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100787 S 51 1 0 "" 21656 nsv8994 12 76541156 76542567 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23255 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19240 nsv438220 12 76544928 76569809 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470491,nssv470490 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA19203,NA19205 nsv437761 12 76565021 76572179 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467642 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19205 nsv518042 12 76671089 76671181 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694193 S 2026 0 1 "" nsv518576 12 76713166 76833275 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694065 S 2026 0 1 "" nsv469481 12 76848923 76867248 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544339 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01336 nsv781 12 76958611 76989809 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5438 S 9 1 0 "" NA19129 dgv206n27 12 76982085 77007315 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv469484,nsv469483 M 1557 0 2 "" 1780862126_A,1780862176_A nsv469485 12 76985547 77017261 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544343 S 1557 0 1 "" NINDS_91 nsv507656 12 77059227 77065227 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619079 S 4 1 0 "" NA10860 nsv53721 12 77190337 77190337 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv72299 M 24 "" dgv42n17 12 77211978 77223693 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437763,nsv437762 M 60 0 2 "" NA19132,NA19208 nsv782 12 77253468 77278159 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4033 S 9 1 0 "" NA12878 nsv783 12 77409199 77440468 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10874 S 9 1 0 "" NA18956 nsv784 12 77496619 77517169 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1098 S 9 1 0 "" NA19240 nsv832466 12 77902959 78092907 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449916,nssv1449915 M 95 0 2 "" nsv507657 12 78087764 78093764 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617836,nssv619080,nssv620511,nssv623115 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv52925 12 78101123 78101303 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71503 M 24 "" nsv507658 12 78119734 78125734 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617837,nssv620512,nssv619081,nssv623116 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv832467 12 78155654 78339983 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449918 S 95 0 1 "" nsv785 12 78382824 78410568 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2001 S 9 1 0 "" NA18555 nsv8995 12 78654687 78665787 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24396,nssv20778,nssv24099,nssv23947,nssv21389,nssv23905,nssv20486,nssv23097,nssv22078,nssv23283,nssv20124,nssv21609,nssv21045,nssv20630,nssv24160,nssv19282,nssv21577,nssv26070,nssv21197,nssv19039,nssv19682 M 31 2 19 Samples from several populations that are part of the HapMap project. "" NA07029,NA11830,NA12740,NA18502,NA18504,NA18517,NA18537,NA18563,NA18564,NA18572,NA18853,NA18860,NA18942,NA18972,NA18975,NA19007,NA19132,NA19144,NA19173,NA19221,NA19240 nsv786 12 78656671 78674803 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10906,nssv6517,nssv4034 M 9 3 0 "" NA12156,NA12878,NA15510 nsv85 12 78657407 78662732 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv85 S 1 1 0 "" NA15510 esv33677 12 78661991 78670448 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv96916 S 51 0 1 "" 21817 nsv818927 12 78691812 78728455 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416387,nssv1416388 M 112 0 2 "" NA18855,NA18857 nsv507659 12 78732968 78738968 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623117 S 4 1 0 "" NA18994 nsv510306 12 78768931 78774931 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618370,nssv621387 M 4 0 2 "" CHM,NA15510 nsv787 12 78784294 78819226 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4035 S 9 1 0 "" NA12878 nsv507660 12 78847234 78853234 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617838,nssv620513,nssv619082,nssv623118 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv53040 12 78885547 78885547 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71618 M 24 "" nsv437764 12 78930489 78948272 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467645 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18521 nsv438221 12 78939801 78940386 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470493,nssv470492 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA18521,NA18522 nsv832468 12 79042908 79253275 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449919 S 95 1 0 "" nsv521152 12 79194215 79214400 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697816 S 2026 0 1 "" nsv832469 12 79210707 79429075 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449920 S 95 0 1 "" nsv7231 12 79316424 79399550 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10875,nssv9841,nssv6518,nssv9285,nssv9284,nssv5439,nssv9842 M 9 0 0 "" NA12156,NA18507,NA18517,NA18956,NA19129 nsv442279 12 79327643 79330579 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv517140 12 79328655 79330063 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv659774,nssv679042,nssv653854,nssv677913,nssv678806 M 2026 0 5 "" nsv523953 12 79328655 79457326 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699802 S 2026 1 0 "" nsv511021 12 79334651 79372454 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618615,nssv621618 M 4 0 0 "" CHM,NA15510 nsv507661 12 79354506 79360506 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619084,nssv623119 M 4 2 0 "" NA10860,NA18994 dgv207n27 12 79399864 79450793 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv469487,nsv469486 M 1557 0 2 "" 1780854449_A,1780862470_A nsv469488 12 79438550 79505120 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544346 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00616 nsv789 12 79816624 79862676 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6519 S 9 0 1 "" NA12156 nsv53642 12 79902377 79902743 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv72220 M 24 "" nsv521788 12 80435676 80477915 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694556 S 2026 0 1 "" nsv53023 12 80481124 80481124 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71601 M 24 "" nsv790 12 80629565 80649278 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2002 S 9 0 1 "" NA18555 nsv791 12 80708611 80735390 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1099 S 9 0 1 "" NA19240 nsv469489 12 80721562 80778591 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544347 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01100 nsv53530 12 80722766 80722766 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv72108 M 24 "" nsv53409 12 80722778 80722778 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71987 M 24 "" nsv832471 12 81081421 81257828 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449931,nssv1449922,nssv1449930,nssv1449925,nssv1449927,nssv1449929,nssv1449926,nssv1449923,nssv1449934,nssv1449924,nssv1449933,nssv1449921,nssv1449932 M 95 0 13 "" nsv53259 12 81238828 81238885 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71837 M 24 "" nsv519197 12 81334313 81558944 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696682 S 2026 1 0 "" nsv438222 12 81459099 81470766 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470495,nssv470494 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA19210,NA19211 nsv521849 12 81516251 82493947 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694624 S 2026 1 0 "" nsv507662 12 81586763 81592763 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623120 S 4 1 0 "" NA18994 nsv469490 12 81591899 82009737 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544348 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01181 dgv523e1 12 81603513 81860089 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv513,essv22210 M 271 0 0 "" NA12044 nsv469491 12 81610863 81706210 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544349 S 1557 0 1 "" 1798860071_A essv19112 12 81670581 81704083 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12044 nsv469492 12 81671084 81708810 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544350 S 1557 0 1 "" NINDS_35 nsv516625 12 81671084 81708810 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv669641,nssv693872,nssv659683 M 2026 0 3 "" nsv818928 12 81671084 81708810 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416961 S 112 0 1 "" NA12044 nsv469494 12 81706210 81708810 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544352 S 1557 0 1 "" NINDS_92 nsv437765 12 81732922 81774401 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467646 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19094 nsv442650 12 81744367 81746241 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv832472 12 81750751 81922221 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449935 S 95 0 1 "" nsv469495 12 81842401 81877247 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544353 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01306 nsv523902 12 81919943 81925808 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699745 S 2026 0 1 "" nsv8996 12 82110912 82116474 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24422 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18860 nsv510604 12 82116961 82181985 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620050 S 4 0 1 "" NA15510 nsv792 12 82118363 82135209 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10907 S 9 0 1 "" NA15510 nsv86 12 82118363 82135209 CNV Loss Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv86 S 1 0 1 "" NA15510 nsv524863 12 82166784 82173896 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700868 S 2026 0 1 "" nsv52734 12 82346513 82347076 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71312 M 24 "" nsv793 12 82409062 82444831 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4036,nssv5441 M 9 2 0 "" NA12878,NA19129 nsv469496 12 82516827 82576943 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544354 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00736 nsv53664 12 82544753 82545065 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv72242 M 24 "" nsv469497 12 82567792 82656471 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544355 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01053 nsv438223 12 82662983 82669951 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470497,nssv470498 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA18608,NA18960 nsv442651 12 82665758 82667709 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv53839 12 82666273 82666479 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv72417 M 24 "" nsv832473 12 82669313 82823473 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449938,nssv1449936,nssv1449937 M 95 2 1 "" nsv469500 12 82976019 83263072 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544356 S 1557 1 0 "" 1780862540_A esv33089 12 83095670 83098913 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98814,essv98326,essv94456,essv97020,essv100066,essv99691,essv100337,essv99497 M 51 5 3 "" 21606,21772,21808,21817,22086,22217,22300,22335 nsv832474 12 83137326 83302891 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449940,nssv1449941 M 95 2 0 "" nsv442280 12 83215743 83220230 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv53451 12 83248867 83255814 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv72029 M 24 "" nsv523684 12 83414968 83426752 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699488 S 2026 0 1 "" nsv832475 12 83483290 83691231 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449943,nssv1449942,nssv1449947,nssv1449944,nssv1449946,nssv1449945,nssv1449948 M 95 7 0 "" nsv469503 12 83543742 83614944 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544357 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00643 dgv208n27 12 83751686 83841722 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv455668,nsv455667 M 1557 0 2 "" 1780862194_A,1782681093_A nsv794 12 83857516 83891888 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9051 S 9 0 1 "" NA12156 nsv510605 12 83929002 83935368 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622662 S 4 0 1 "" NA18994 nsv455678 12 84201285 84287577 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533186 S 1557 0 1 "" 1782681096_A esv2751125 12 84387326 84600708 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6989742,essv6983142,essv6983143 M 771 0 1 "" BEC_547 nsv795 12 84395860 84440590 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9052 S 9 0 1 "" NA12156 nsv455679 12 84410864 84527217 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533187 S 1557 0 1 "" 1780862414_A esv2751126 12 84414900 84563871 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6985148,essv6989478,essv6990086,essv6985147 M 771 0 1 "" SPC_108 nsv520857 12 84421780 84430330 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv688792,nssv676413 M 2026 0 2 "" nsv523422 12 84441887 84498201 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699176 S 2026 0 1 "" nsv522439 12 84523466 84568734 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705797 S 2026 0 1 "" nsv796 12 84582276 84608796 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4037 S 9 1 0 "" NA12878 nsv455680 12 84623278 84662745 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533188 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00752 nsv516647 12 84818709 84820472 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv676414,nssv669865 M 2026 0 2 "" nsv797 12 84845962 84879917 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2888 S 9 1 0 "" NA18555 nsv832476 12 84892219 84999590 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449949 S 95 0 1 "" nsv798 12 84902290 84949919 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6520 S 9 0 1 "" NA12156 nsv518059 12 84918680 85250194 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695470 S 2026 0 1 "" nsv510606 12 85047917 85057770 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618896 S 4 0 1 "" NA10860 nsv800 12 85074847 85120355 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6521 S 9 0 1 "" NA12156 nsv801 12 85129840 85179179 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4038,nssv5442,nssv2003,nssv6522,nssv1101 M 9 5 0 "" NA12156,NA12878,NA18555,NA19129,NA19240 nsv509473 12 85150669 85151932 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623629,nssv619610,nssv618094,nssv620975 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv802 12 85186226 85226152 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9950,nssv5443 M 9 0 2 "" NA18507,NA19129 nsv442652 12 85203550 85215269 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv803 12 85351006 85384248 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9054 S 9 1 0 "" NA12156 nsv520577 12 85522845 85553778 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv672729,nssv683140 M 2026 2 0 "" nsv455681 12 85567056 85635308 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533189 S 1557 0 1 "" 1780862404_A nsv804 12 85663237 85665754 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2889 S 9 1 0 "" NA18555 nsv455682 12 85696978 85777339 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533190 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01285 nsv7233 12 85705958 85792048 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9843,nssv9286,nssv10876,nssv6523 M 9 0 0 "" NA12156,NA18507,NA18517,NA18956 nsv805 12 85737238 85767301 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10908 S 9 1 0 "" NA15510 nsv511022 12 85738313 85762103 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624339,nssv621619 M 4 0 0 "" NA15510,NA18994 nsv510307 12 85741783 85747783 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618371,nssv622217 M 4 0 2 "" CHM,NA10860 nsv507663 12 85750392 85756392 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617839,nssv619085 M 4 2 0 "" CHM,NA10860 nsv519543 12 85809797 86030488 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696912 S 2026 0 1 "" nsv517718 12 85822376 85932677 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv666337,nssv651665,nssv688151,nssv692371,nssv681500,nssv679317,nssv670231,nssv666149,nssv682874 M 2026 0 9 "" nsv806 12 85884778 85929974 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9055 S 9 0 1 "" NA12156 nsv442281 12 85915851 85928739 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv442653 12 86033381 86035729 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv519837 12 86264832 86268307 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697078 S 2026 0 1 "" nsv438224 12 86264832 86275499 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470499,nssv470502,nssv470501,nssv470500 M 269 0 4 Samples from several populations that are part of the HapMap project. "" NA10838,NA10861,NA11995,NA12003 nsv510308 12 86362524 86368524 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624124 S 4 0 1 "" NA18994 nsv832477 12 86570143 86733281 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449951 S 95 0 1 "" nsv52586 12 86642926 86646387 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71164 M 24 "" nsv53100 12 86840639 86840639 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71678 M 24 "" nsv807 12 87030076 87074961 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9056 S 9 0 1 "" NA12156 nsv832478 12 87155237 87310371 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449952 S 95 0 1 "" nsv8997 12 87258378 87347700 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20516,nssv20660,nssv24126,nssv24448,nssv21479 M 31 0 5 Samples from several populations that are part of the HapMap project. "" NA18517,NA18853,NA18860,NA19007,NA19173 nsv8998 12 87514326 87519407 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23974 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19132 nsv507664 12 87514977 87520977 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623121 S 4 1 0 "" NA18994 nsv523977 12 87964643 87972422 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699832 S 2026 0 1 "" nsv808 12 88076026 88120714 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9057 S 9 0 1 "" NA12156 nsv525392 12 88149871 88150937 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701515 S 2026 0 1 "" nsv832479 12 88363558 88569237 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449953 S 95 1 0 "" nsv832480 12 88721677 88904615 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449954 S 95 1 0 "" nsv527605 12 88776395 88776452 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704067 S 2026 0 1 "" nsv809 12 88783936 88812154 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9951 S 9 1 0 "" NA18507 nsv507665 12 88938874 88944874 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620514,nssv617840,nssv623122 M 4 3 0 "" CHM,NA15510,NA18994 nsv811 12 88984118 88999243 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2005 S 9 0 1 "" NA18555 nsv437766 12 88985104 88996973 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467647 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18860 nsv438225 12 88992727 88993412 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470504,nssv470505,nssv470510,nssv470511,nssv470508,nssv470506,nssv470509,nssv470503 M 269 0 8 Samples from several populations that are part of the HapMap project. "" NA06994,NA07029,NA07345,NA07348,NA10839,NA12006,NA18858,NA18860 nsv832482 12 89056433 89206875 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449955 S 95 1 0 "" nsv525698 12 89141107 89157318 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701858 S 2026 1 0 "" esv32647 12 89188673 89189815 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100949 S 51 0 1 "" 21693 nsv53274 12 89245672 89245672 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71852 M 24 "" dgv30n6 12 89348841 89349061 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv52977,nsv52629 M 24 "" nsv812 12 89381492 89422262 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1102 S 9 0 1 "" NA19240 nsv442654 12 89394785 89400376 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv527968 12 89578966 89593036 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704480 S 2026 0 1 "" nsv455683 12 89579976 89656675 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533191 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00926 nsv813 12 89586404 89620272 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5444 S 9 1 0 "" NA19129 nsv455684 12 89627023 89689799 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533192 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01191 dgv209n27 12 89694603 89749670 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv455685,nsv455687 M 1557 0 2 "" 1780862459_A,HGDP01030 nsv521037 12 89703962 89707510 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697748 S 2026 0 1 "" nsv437767 12 89732204 89744716 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467648 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19208 nsv832483 12 89737042 89943896 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449956 S 95 1 0 "" nsv520079 12 89745355 89749670 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697213 S 2026 0 1 "" nsv814 12 89769606 89802900 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1103 S 9 1 0 "" NA19240 dgv210n27 12 90005729 90155173 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv455690,nsv455689,nsv455688 M 1557 0 3 "" HGDP00145,HGDP00154,HGDP00155 nsv832484 12 90035751 90179822 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449966,nssv1449967,nssv1449965,nssv1449957,nssv1449964,nssv1449959,nssv1449963,nssv1449958,nssv1449960 M 95 1 8 "" nsv815 12 90101510 90147172 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6524 S 9 0 1 "" NA12156 nsv510607 12 90162883 90222244 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622664 S 4 0 1 "" NA18994 nsv816 12 90260560 90293769 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9058 S 9 1 0 "" NA12156 nsv832485 12 90279009 90453363 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449968 S 95 1 0 "" nsv832486 12 90400257 90609367 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449969 S 95 1 0 "" nsv52613 12 90504146 90504146 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71191 M 24 "" nsv7234 12 90596947 97535689 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10909 S 9 0 0 "" NA15510 nsv521970 12 90612446 90614886 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694739 S 2026 0 1 "" nsv832487 12 90616515 90819560 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449970 S 95 1 0 "" dgv524e1 12 90649382 90813144 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv24278,esv275 M 271 0 0 "" NA10856 nsv524267 12 90656068 90666543 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700165 S 2026 1 0 "" nsv817 12 90665337 90699353 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9059 S 9 1 0 "" NA12156 nsv8999 12 90783615 90788488 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26089 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19221 nsv525958 12 90810695 90814895 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702168 S 2026 0 1 "" nsv832488 12 90827003 90992349 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449971 S 95 1 0 "" nsv442283 12 91139396 91149782 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv52617 12 91188281 91189720 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71195 M 24 "" nsv53835 12 91189730 91190032 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv72413 M 24 "" nsv525093 12 91274775 91279485 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701152 S 2026 0 1 "" nsv818 12 91345777 91391276 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6525 S 9 0 1 "" NA12156 nsv510309 12 91464686 91470686 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618372 S 4 0 1 "" CHM nsv455691 12 91633671 91794070 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533199 S 1557 1 0 "" 1780854090_A nsv520865 12 91703483 91727483 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694542,nssv685792,nssv676578,nssv695366 M 2026 0 4 "" nsv819 12 91860454 91893125 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2006 S 9 1 0 "" NA18555 nsv820 12 92120520 92153051 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6526 S 9 1 0 "" NA12156 nsv53478 12 92122158 92122238 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv72056 M 24 "" dgv525e1 12 92175967 92188663 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv25171,esv1037 M 271 0 0 "" NA11840 nsv516635 12 92178342 92195929 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv669770,nssv681574,nssv683917 M 2026 0 3 "" nsv822 12 92246554 92291296 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9061 S 9 0 1 "" NA12156 nsv518120 12 92287988 92290052 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694203 S 2026 0 1 "" nsv823 12 92318151 92362846 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9062 S 9 0 1 "" NA12156 nsv528151 12 92326865 92329712 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704698 S 2026 0 1 "" nsv438227 12 92363640 92365457 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470512,nssv470513 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA18563,NA18572 nsv824 12 92429514 92461713 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1104 S 9 1 0 "" NA19240 nsv53050 12 92483944 92487027 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71628 M 24 "" nsv825 12 92546797 92578824 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5445 S 9 1 0 "" NA19129 nsv510310 12 92584458 92590458 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618373 S 4 0 1 "" CHM nsv826 12 92625348 92670779 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6527 S 9 0 1 "" NA12156 nsv442284 12 92700148 92704034 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv523282 12 92702245 92704990 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699021 S 2026 0 1 "" nsv9000 12 92722161 93155625 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23125 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18504 nsv529049 12 92737945 92738353 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705769 S 2026 0 1 "" nsv524248 12 92742879 92748824 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700140 S 2026 0 1 "" nsv525412 12 92745268 92745386 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701536 S 2026 0 1 "" nsv53078 12 92860797 92861108 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71656 M 24 "" nsv510311 12 92880751 92886751 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618374 S 4 0 1 "" CHM nsv827 12 92956260 92989845 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4039 S 9 1 0 "" NA12878 nsv519828 12 93043143 93045974 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv658968,nssv682698 M 2026 0 2 "" nsv437769 12 93064015 93071828 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467650 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19142 nsv53225 12 93073320 93073479 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71803 M 24 "" nsv832489 12 93082729 93249226 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449972 S 95 0 1 "" nsv828 12 93102707 93128873 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2007 S 9 1 0 "" NA18555 nsv520739 12 93167650 93172672 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv674871,nssv692988,nssv676415 M 2026 0 3 "" nsv832490 12 93226965 93392756 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449974 S 95 1 0 "" nsv516550 12 93235062 93392516 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv658145,nssv669091 M 2026 0 2 "" nsv52506 12 93450120 93451485 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71084 M 24 "" nsv507666 12 93469529 93475529 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620515,nssv619086 M 4 2 0 "" NA10860,NA15510 nsv829 12 93558888 93593215 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1105 S 9 1 0 "" NA19240 nsv53265 12 93722228 93731998 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71843 M 24 "" nsv53404 12 93889515 93889650 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71982 M 24 "" nsv518889 12 93931847 93958484 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696347 S 2026 1 0 "" nsv519584 12 93933563 93936920 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv658762,nssv676105,nssv656966,nssv660326 M 2026 0 4 "" nsv52790 12 93934152 93939933 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71368 M 24 "" nsv526515 12 94060610 94064353 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702825 S 2026 0 1 "" nsv53566 12 94090768 94091933 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv72144 M 24 "" nsv528802 12 94281873 94292313 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705476 S 2026 0 1 "" nsv507667 12 94287532 94293532 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620516,nssv617841,nssv619087 M 4 3 0 "" CHM,NA10860,NA15510 nsv438228 12 94301826 94311594 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470515,nssv470514 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA19209,NA19211 nsv528896 12 94432736 94488670 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705580 S 2026 1 0 "" nsv528916 12 94468158 94478621 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705603 S 2026 0 1 "" nsv830 12 94471851 94516986 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2008 S 9 0 1 "" NA18555 nsv831 12 94474319 94507781 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1106 S 9 1 0 "" NA19240 nsv455692 12 94523501 94576791 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533200 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00952 nsv521234 12 94525831 94528447 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694425 S 2026 1 0 "" nsv526022 12 94554351 94561596 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702252 S 2026 0 1 "" nsv833 12 94561501 94592998 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6528 S 9 1 0 "" NA12156 nsv455693 12 94750959 94777158 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533201 S 1557 0 1 "" NINDS_33 nsv455694 12 94791328 94813107 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533202 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00148 nsv834 12 94811083 94845841 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2009 S 9 0 1 "" NA18555 nsv523292 12 94888606 94911669 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699032 S 2026 1 0 "" nsv832491 12 94987005 95080628 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449975 S 95 0 1 "" nsv835 12 95030223 95038342 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9063 S 9 0 1 "" NA12156 nsv53408 12 95067607 95072548 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71986 M 24 "" nsv836 12 95155478 95190185 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4040 S 9 1 0 "" NA12878 nsv53730 12 95207831 95207831 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv72308 M 24 "" nsv519948 12 95382285 95382710 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697141 S 2026 0 1 "" nsv818929 12 95382285 95383021 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417528 S 112 1 0 "" NA18968 nsv526288 12 95382285 95402285 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702568 S 2026 0 1 "" nsv522649 12 95584907 95601017 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv706049 S 2026 0 1 "" nsv525218 12 95646414 95648102 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701304 S 2026 0 1 "" nsv510312 12 95852331 95858331 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624125 S 4 0 1 "" NA18994 nsv521154 12 95880595 95896400 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697817 S 2026 0 1 "" nsv832493 12 95881033 96078311 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449976 S 95 1 0 "" nsv837 12 95884430 95914060 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9064 S 9 0 1 "" NA12156 nsv832494 12 96048765 96222662 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449977 S 95 1 0 "" nsv838 12 96070654 96102901 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1107 S 9 1 0 "" NA19240 nsv839 12 96188358 96219643 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10877 S 9 1 0 "" NA18956 nsv52640 12 96204268 96204335 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71218 M 24 "" nsv455695 12 96257589 96266712 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533203 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00001 nsv832495 12 96264071 96428149 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449978 S 95 1 0 "" nsv507668 12 96291720 96297720 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617842 S 4 1 0 "" CHM nsv840 12 96353736 96387698 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4041 S 9 1 0 "" NA12878 nsv438229 12 96379481 96391285 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470516,nssv470517 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA19138,NA19139 nsv9001 12 96433426 96510423 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20965 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18980 nsv438230 12 96517213 96533447 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470523,nssv470520,nssv470521,nssv470522 M 269 0 4 Samples from several populations that are part of the HapMap project. "" NA10839,NA10855,NA11831,NA12005 nsv53546 12 96518113 96518172 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv72124 M 24 "" nsv521692 12 96541331 96562664 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698312 S 2026 0 1 "" nsv510313 12 96577390 96583390 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622218 S 4 0 1 "" NA10860 nsv525617 12 96609926 96611662 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701762 S 2026 1 0 "" dgv526e1 12 96672954 96848094 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv202,essv16290 M 271 0 0 "" NA19161 nsv841 12 96773899 96807945 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4042 S 9 1 0 "" NA12878 nsv9002 12 96834725 96841763 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26108 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19221 nsv53281 12 97040058 97040209 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71859 M 24 "" nsv438231 12 97173329 97173989 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470526,nssv470528,nssv470529,nssv470525,nssv470524,nssv470527 M 269 0 6 Samples from several populations that are part of the HapMap project. "" NA12752,NA12753,NA12760,NA12761,NA12763,NA12864 nsv520270 12 97206663 97218849 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697317 S 2026 0 1 "" nsv842 12 97267367 97312698 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6529 S 9 0 1 "" NA12156 nsv520714 12 97479664 97485682 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv682378,nssv678490,nssv674657 M 2026 0 3 "" nsv832496 12 97544313 97701867 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449979 S 95 1 0 "" nsv455696 12 97574360 97610756 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533204 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00568 nsv844 12 97604788 97618679 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1108 S 9 1 0 "" NA19240 nsv845 12 97722027 97733458 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9066 S 9 0 1 "" NA12156 nsv526324 12 97729622 97733153 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702613 S 2026 0 1 "" nsv846 12 97868469 97909305 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9067 S 9 0 1 "" NA12156 nsv847 12 97961843 97996454 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1109 S 9 1 0 "" NA19240 nsv510314 12 98131765 98137765 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618375,nssv624126,nssv622219,nssv621388 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv848 12 98193799 98238777 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9068 S 9 0 1 "" NA12156 nsv849 12 98267550 98313181 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4044 S 9 0 1 "" NA12878 nsv437154 12 98290388 98307004 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467035 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA10838 nsv9004 12 98295885 98305947 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23932,nssv18791,nssv24474,nssv26127,nssv24031 M 31 0 5 Samples from several populations that are part of the HapMap project. "" NA12872,NA18502,NA18860,NA19132,NA19221 nsv442655 12 98297761 98301202 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv438232 12 98297960 98304976 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470531 S 269 0 1 Samples from several populations that are part of the HapMap project. "" NA12144 nsv515574 12 98297960 98304976 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv669171,nssv680318,nssv692594,nssv681188,nssv654205,nssv686258,nssv674406,nssv690979,nssv690643,nssv677892,nssv674527,nssv675791,nssv657547,nssv676579,nssv654991,nssv654440,nssv657157,nssv666315,nssv674603,nssv663183,nssv678710,nssv651864,nssv672842,nssv671685,nssv693401 M 2026 0 25 "" esv33474 12 98351254 98351406 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv96035 S 51 1 0 "" 22127 esv32717 12 98479337 98584775 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100261 S 51 1 0 "" 22286 nsv519031 12 98483994 98485340 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696500 S 2026 0 1 "" nsv517202 12 98498174 98511241 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv684668,nssv660779,nssv684823,nssv684743,nssv684194,nssv657235,nssv653998,nssv654070,nssv675255,nssv651979,nssv686290,nssv652974,nssv689234,nssv673528,nssv688393,nssv660666,nssv662121,nssv696413,nssv693347,nssv652526,nssv653112,nssv653448,nssv673371,nssv681641,nssv688278,nssv679374 M 2026 0 26 "" nsv455699 12 98582456 98584918 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533206 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01328 nsv525970 12 98582456 98607244 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702185 S 2026 0 1 "" nsv850 12 98750675 98759272 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9844 S 9 1 0 "" NA18507 nsv523049 12 98913543 98935261 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698732 S 2026 0 1 "" nsv518866 12 98935261 98945590 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694282 S 2026 0 1 "" nsv851 12 99272568 99317399 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9069 S 9 0 1 "" NA12156 nsv852 12 99319821 99354998 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4045 S 9 1 0 "" NA12878 nsv455700 12 99383476 99438795 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533207 S 1557 0 1 "" NINDS_36 nsv442285 12 99439304 99446419 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv52731 12 99619916 99621152 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71309 M 24 "" nsv853 12 99680678 99725320 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5446 S 9 0 1 "" NA19129 nsv518877 12 99711781 99714234 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694283 S 2026 0 1 "" nsv856 12 99858740 99891783 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9070 S 9 1 0 "" NA12156 nsv857 12 100026215 100061343 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6530,nssv4046 M 9 2 0 "" NA12156,NA12878 nsv438233 12 100026444 100034552 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470532,nssv470535,nssv470534,nssv470533,nssv470537,nssv470536 M 269 0 6 Samples from several populations that are part of the HapMap project. "" NA06994,NA07019,NA07029,NA07056,NA10835,NA12249 nsv527122 12 100246038 100253135 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703505 S 2026 0 1 "" nsv510315 12 100256082 100262082 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624127 S 4 0 1 "" NA18994 nsv53174 12 100258772 100259425 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71752 M 24 "" nsv527505 12 100276707 100282432 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703957 S 2026 0 1 "" nsv507669 12 100375067 100381067 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617843,nssv620517,nssv619088 M 4 3 0 "" CHM,NA10860,NA15510 nsv858 12 100401381 100434154 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1110 S 9 1 0 "" NA19240 nsv832497 12 100563444 100758108 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449980 S 95 1 0 "" nsv859 12 100592665 100616330 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4047 S 9 0 1 "" NA12878 nsv860 12 100622338 100634078 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10878 S 9 0 1 "" NA18956 nsv861 12 100668757 100700909 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5447 S 9 1 0 "" NA19129 nsv525663 12 100743968 100751033 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701819 S 2026 0 1 "" nsv455702 12 101059666 101130078 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533208 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00966 nsv862 12 101188056 101222785 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1111 S 9 1 0 "" NA19240 nsv832498 12 101231043 101416036 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449981 S 95 1 0 "" nsv832499 12 101310767 101477725 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449982 S 95 1 0 "" nsv863 12 101498217 101542709 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2010 S 9 0 1 "" NA18555 nsv509474 12 101589576 101596327 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623630 S 4 1 0 "" NA18994 nsv832500 12 101618059 101775134 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449983,nssv1449985 M 95 0 2 "" nsv516328 12 101675777 101677726 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv667617,nssv693397,nssv681499 M 2026 0 3 "" nsv53435 12 101731913 101732062 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv72013 M 24 "" nsv832501 12 101966394 102151292 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449986 S 95 1 0 "" nsv864 12 102045052 102078901 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9071 S 9 1 0 "" NA12156 nsv521147 12 102359295 102359375 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697814 S 2026 0 1 "" nsv528405 12 102399062 102403969 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704997 S 2026 0 1 "" nsv52539 12 102456613 102456613 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71117 M 24 "" nsv52733 12 102456637 102456637 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71311 M 24 "" nsv527362 12 102531929 102541441 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703793 S 2026 0 1 "" nsv865 12 102532569 102577331 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9072 S 9 0 1 "" NA12156 nsv518252 12 102562257 102564298 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695683 S 2026 0 1 "" nsv525838 12 102562257 102565557 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702030 S 2026 0 1 "" nsv524064 12 102564064 102568313 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699932 S 2026 0 1 "" nsv867 12 102574163 102609235 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1112 S 9 1 0 "" NA19240 nsv52873 12 102693733 102696049 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71451 M 24 "" nsv53249 12 102879464 102879539 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71827 M 24 "" nsv52595 12 102881974 102883192 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71173 M 24 "" nsv52994 12 103198753 103204244 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71572 M 24 "" nsv832502 12 103336196 103410755 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449990,nssv1449987,nssv1449988,nssv1449989 M 95 0 4 "" nsv518733 12 103344763 103346652 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696182 S 2026 0 1 "" nsv832504 12 103355798 103530712 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449991,nssv1449992 M 95 1 1 "" nsv868 12 103361431 103398039 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9074 S 9 0 1 "" NA12156 nsv515742 12 103565721 103566349 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv692483,nssv664646 M 2026 0 2 "" nsv832505 12 103817819 104000232 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449993 S 95 1 0 "" nsv869 12 103865892 103897371 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10879,nssv2011 M 9 0 2 "" NA18555,NA18956 nsv832506 12 103963741 104140028 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449994 S 95 1 0 "" nsv510589 12 104172538 104246222 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620051 S 4 0 1 "" NA15510 nsv516472 12 104215070 104220065 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv668580,nssv660556 M 2026 0 2 "" nsv510316 12 104259834 104265834 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624128,nssv618376 M 4 0 2 "" CHM,NA18994 nsv870 12 104308964 104344350 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1113 S 9 1 0 "" NA19240 nsv832507 12 104324152 104507653 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449996 S 95 1 0 "" nsv510317 12 104454371 104460371 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621389 S 4 0 1 "" NA15510 nsv832508 12 104701264 104911579 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449997,nssv1449998 M 95 2 0 "" nsv519500 12 104852923 104858637 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv656430,nssv693326 M 2026 0 2 "" nsv832509 12 104866355 105018688 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1449999 S 95 1 0 "" nsv871 12 104909983 104932273 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9075 S 9 0 1 "" NA12156 nsv832510 12 105290197 105453607 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450000 S 95 0 1 "" nsv507670 12 105304719 105310719 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619089 S 4 1 0 "" NA10860 nsv832511 12 105448121 105610295 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450001 S 95 1 0 "" nsv507671 12 105449451 105455451 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620518,nssv619090,nssv617844 M 4 3 0 "" CHM,NA10860,NA15510 nsv522964 12 105492092 105493308 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698633 S 2026 0 1 "" nsv9005 12 105521700 105869597 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20776 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18552 dgv99n21 12 105856062 105870347 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv524439,nsv525081 M 2026 0 2 "" nsv516865 12 105867340 105870347 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv671806,nssv654537 M 2026 0 2 "" nsv437155 12 105867340 105881312 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467036 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA10831 nsv526138 12 105870347 105872719 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702393 S 2026 0 1 "" esv33807 12 106016211 106016362 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98024 S 51 1 0 "" 22259 nsv872 12 106191405 106224810 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1114 S 9 1 0 "" NA19240 nsv873 12 106319143 106346457 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9076 S 9 0 1 "" NA12156 esv32768 12 106358337 106358550 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99440 S 51 1 0 "" 22335 nsv874 12 106465560 106498902 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1115 S 9 1 0 "" NA19240 nsv875 12 106514070 106559177 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9077 S 9 0 1 "" NA12156 nsv876 12 106523038 106557350 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1116 S 9 1 0 "" NA19240 nsv524699 12 106535955 106543149 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700679 S 2026 0 1 "" nsv524835 12 106535955 106547859 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700836 S 2026 0 1 "" nsv455705 12 106537294 106548218 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533209 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00862 nsv528273 12 106547606 106547859 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704842 S 2026 1 0 "" nsv878 12 106701799 106732176 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5448 S 9 1 0 "" NA19129 nsv507672 12 106715531 106721531 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623123 S 4 1 0 "" NA18994 nsv879 12 106783265 106820081 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2012,nssv1117,nssv4048 M 9 3 0 "" NA12878,NA18555,NA19240 nsv832512 12 106878162 107040616 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450003,nssv1450002 M 95 2 0 "" nsv510318 12 106882372 106888372 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618377 S 4 0 1 "" CHM dgv211n27 12 106882469 106991402 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv455709,nsv455706,nsv455710 M 1557 0 3 "" 1780862095_A,HGDP01384,NINDS_210 nsv527811 12 106908230 106978604 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704305 S 2026 0 1 "" nsv880 12 106956662 106980196 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2013,nssv5450 M 9 2 0 "" NA18555,NA19129 nsv507673 12 106960405 106966405 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617845,nssv619091 M 4 2 0 "" CHM,NA10860 nsv7235 12 106979392 107015850 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9288,nssv5451 M 9 0 0 "" NA18517,NA19129 nsv881 12 106989267 107018439 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4049 S 9 1 0 "" NA12878 nsv438234 12 107297172 107311184 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470544,nssv470543,nssv470540,nssv470545,nssv470538,nssv470539,nssv470542,nssv470546 M 269 0 8 Samples from several populations that are part of the HapMap project. "" NA18506,NA18507,NA18521,NA18522,NA18912,NA18914,NA19099,NA19100 nsv509475 12 107467000 107486520 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618095,nssv623631,nssv619612,nssv620976 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv882 12 107469395 107483876 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9078 S 9 1 0 "" NA12156 nsv524079 12 107484108 107494548 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699948 S 2026 0 1 "" nsv883 12 107492570 107538292 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6531 S 9 0 1 "" NA12156 esv2422361 12 107688920 108018885 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161433 S 181 1 0 "" ND03950 nsv524524 12 107774517 107795786 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700473 S 2026 1 0 "" nsv455711 12 107781213 107813320 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533214 S 1557 0 1 "" 1780862021_A nsv525664 12 107832662 107833381 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701820 S 2026 0 1 "" nsv53822 12 107955927 107955927 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv72400 M 24 "" nsv526106 12 107999279 108005112 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702354 S 2026 0 1 "" nsv455712 12 108015569 108126301 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533215 S 1557 1 0 "" NINDS_201 nsv528323 12 108015569 108126301 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704904 S 2026 1 0 "" nsv526593 12 108031788 108040672 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702912 S 2026 0 1 "" nsv507674 12 108093574 108099574 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617846,nssv620519,nssv619092 M 4 3 0 "" CHM,NA10860,NA15510 nsv515873 12 108287206 108305335 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv682955,nssv656997,nssv656797,nssv693829,nssv665115,nssv656914,nssv654988 M 2026 7 0 "" nsv526783 12 108573283 108590134 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703135 S 2026 0 1 "" nsv518032 12 108579230 108590134 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695441 S 2026 0 1 "" nsv884 12 108877676 108911107 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2890 S 9 1 0 "" NA18555 nsv507675 12 109420724 109426724 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623124 S 4 1 0 "" NA18994 nsv885 12 109502340 109535093 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4050 S 9 1 0 "" NA12878 nsv525818 12 109633746 109639214 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702004 S 2026 0 1 "" nsv509476 12 109676139 109782266 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620977 S 4 1 0 "" NA15510 nsv442287 12 109696674 109698445 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv7236 12 109752327 109832397 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6534 S 9 0 0 "" NA12156 nsv438235 12 109845756 109854519 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470548,nssv470547 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA12740,NA12751 nsv832513 12 110184811 110355654 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450004 S 95 1 0 "" nsv455714 12 110204942 110251122 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533216 S 1557 0 1 "" NINDS_70 nsv516920 12 110261273 110263303 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv656998,nssv654989,nssv674628 M 2026 0 3 "" esv33030 12 110305979 110306160 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv92782 S 51 0 1 "" 21944 nsv886 12 110315503 110350331 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9079 S 9 0 1 "" NA12156 nsv510319 12 110386622 110392622 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624129 S 4 0 1 "" NA18994 nsv455715 12 110661800 110768885 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533217 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00962 nsv515716 12 110661800 110768885 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv662555,nssv664521 M 2026 2 0 "" nsv887 12 110903726 110912856 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9080 S 9 0 1 "" NA12156 nsv52789 12 110935295 110939459 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71367 M 24 "" nsv889 12 111345782 111390632 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9082 S 9 0 1 "" NA12156 nsv438236 12 111619143 111636282 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470549,nssv470550 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA18506,NA18508 nsv832515 12 111678549 111827456 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450005 S 95 1 0 "" nsv832516 12 111783825 111941322 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450008,nssv1450007 M 95 2 0 "" nsv515628 12 111860411 111860859 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv673781,nssv664158 M 2026 0 2 "" nsv890 12 111876490 111892414 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9083 S 9 1 0 "" NA12156 nsv507676 12 111910848 111916848 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620520,nssv619093,nssv623125 M 4 3 0 "" NA10860,NA15510,NA18994 nsv891 12 111928450 111954372 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5452 S 9 0 1 "" NA19129 nsv519540 12 111943230 112360124 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv676844,nssv656774,nssv696607 M 2026 1 2 "" nsv892 12 112420241 112437109 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9084 S 9 0 1 "" NA12156 nsv52578 12 112443906 112443961 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71156 M 24 "" nsv510573 12 112482103 112579464 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620053 S 4 0 1 "" NA15510 nsv893 12 112598206 112630552 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6535 S 9 1 0 "" NA12156 nsv455718 12 112636869 112661612 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533218 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00526 nsv527640 12 112700931 112703818 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704110 S 2026 0 1 "" nsv509477 12 112752281 112792329 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619613 S 4 1 0 "" NA10860 nsv437770 12 112866928 112909082 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467651 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19194 nsv507677 12 112939610 112945610 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620521 S 4 1 0 "" NA15510 nsv894 12 113056245 113088157 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5453 S 9 1 0 "" NA19129 nsv442288 12 113094923 113100625 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" esv33215 12 113095002 113100612 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97332,essv100600 M 51 0 2 "" 21879,22298 nsv515517 12 113097348 113100629 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv653426,nssv668379,nssv664214,nssv657835,nssv665577,nssv683737,nssv666094,nssv687205,nssv677589,nssv655256,nssv657870 M 2026 0 11 "" nsv832517 12 113113486 113292888 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450009 S 95 1 0 "" nsv832518 12 113210058 113398300 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450010,nssv1450011 M 95 0 2 "" nsv455720 12 113306923 113323538 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533219 S 1557 0 1 "" 1780862433_A dgv100n21 12 113432483 113469157 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv521912,nsv522051 M 2026 0 2 "" nsv525839 12 113461271 113461694 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702031 S 2026 1 0 "" nsv53058 12 113540864 113540919 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71636 M 24 "" nsv53431 12 113546187 113549759 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv72009 M 24 "" nsv832519 12 113659268 113881790 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450012,nssv1450013 M 95 0 2 "" nsv52687 12 113806565 113806565 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71265 M 24 "" nsv510590 12 113947741 113999836 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620054 S 4 0 1 "" NA15510 nsv455721 12 113987795 114006179 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533220 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01063 nsv522639 12 113998886 114007676 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv706037 S 2026 0 1 "" nsv518378 12 114005625 114006179 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695807 S 2026 0 1 "" dgv101n21 12 114005625 114007676 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv526565,nsv515549 M 2026 0 6 "" nsv510574 12 114030672 114046822 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620055 S 4 0 1 "" NA15510 nsv526914 12 114101510 114105043 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703275 S 2026 0 1 "" nsv455723 12 114110231 114135002 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533221 S 1557 0 1 "" 1780862015_A nsv528335 12 114153533 114154055 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704917 S 2026 0 1 "" nsv437771 12 114174261 114192723 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467652 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18854 nsv528768 12 114201866 114207858 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705432 S 2026 0 1 "" nsv524884 12 114263790 114265636 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700890 S 2026 0 1 "" nsv510320 12 114291520 114297520 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622220 S 4 0 1 "" NA10860 nsv832520 12 114292318 114498774 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450014,nssv1450015 M 95 0 2 "" nsv510321 12 114478581 114484581 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618378,nssv624130 M 4 0 2 "" CHM,NA18994 nsv895 12 114514754 114549726 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1119 S 9 1 0 "" NA19240 nsv52837 12 114540246 114542623 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71415 M 24 "" nsv832521 12 114622676 114782702 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450016 S 95 0 1 "" nsv53588 12 114671637 114671700 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv72166 M 24 "" dgv527e1 12 114691670 114713454 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv5767,esv916 M 271 0 0 "" NA18540 nsv524703 12 114802009 114810180 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700686 S 2026 0 1 "" nsv832522 12 114938644 115111206 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450018,nssv1450020,nssv1450022,nssv1450023,nssv1450019,nssv1450021 M 95 0 6 "" nsv52565 12 115024719 115024719 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71143 M 24 "" nsv528118 12 115470096 115496664 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704661 S 2026 1 0 "" nsv896 12 115534447 115553981 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5454 S 9 1 0 "" NA19129 nsv53379 12 115549605 115550943 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71957 M 24 "" nsv832523 12 115553063 115736530 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450024,nssv1450026,nssv1450025,nssv1450027 M 95 1 3 "" nsv897 12 115554340 115587935 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5455 S 9 1 0 "" NA19129 nsv521649 12 115590260 115599507 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698267 S 2026 0 1 "" nsv526125 12 115599507 115601552 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702376 S 2026 0 1 "" nsv53492 12 115651408 115653683 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv72070 M 24 "" nsv898 12 115749944 115784897 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1120 S 9 1 0 "" NA19240 nsv832524 12 115776830 115959296 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450029 S 95 1 0 "" nsv519118 12 115848805 115983900 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696594 S 2026 0 1 "" nsv900 12 115852234 115885426 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4051 S 9 1 0 "" NA12878 nsv832526 12 115992954 116186541 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450031,nssv1450032,nssv1450030 M 95 0 3 "" nsv510592 12 116081592 116147433 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617402 S 4 0 1 "" CHM nsv52574 12 116103693 116106273 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71152 M 24 "" nsv53465 12 116156822 116158132 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv72043 M 24 "" nsv509478 12 116245891 116283524 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620978,nssv619614 M 4 2 0 "" NA10860,NA15510 nsv901 12 116253335 116285932 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10910,nssv2015,nssv6536,nssv4054 M 9 4 0 "" NA12156,NA12878,NA15510,NA18555 nsv87 12 116267396 116284876 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv87 S 1 1 0 "" NA15510 nsv528231 12 116339830 116341956 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704793 S 2026 0 1 "" nsv832527 12 116436727 116572964 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450033 S 95 1 0 "" nsv528755 12 116437448 116447133 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705417 S 2026 0 1 "" nsv517825 12 116468361 116473029 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695230 S 2026 0 1 "" nsv442289 12 116512044 116514247 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv519555 12 116609619 116613709 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv659960,nssv671515,nssv656834,nssv705042 M 2026 3 1 "" nsv509481 12 116626767 116696766 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623633 S 4 1 0 "" NA18994 nsv53849 12 116641894 116649645 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv72427 M 24 "" nsv53654 12 116998746 116998835 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv72232 M 24 "" nsv52642 12 116998862 116998933 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71220 M 24 "" nsv524938 12 117087456 117203395 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700952 S 2026 1 0 "" nsv523621 12 117421328 117481863 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699418 S 2026 0 1 "" nsv507678 12 117541662 117547662 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620523 S 4 1 0 "" NA15510 nsv519756 12 117555077 117689962 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694345 S 2026 1 0 "" nsv507679 12 117561212 117567212 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623126,nssv617847 M 4 2 0 "" CHM,NA18994 dgv528e1 12 117692414 117757043 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv885,essv1567 M 271 0 0 "" NA18997 nsv528073 12 117731383 117731691 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704609 S 2026 0 1 "" nsv438238 12 117898473 117903932 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470551,nssv470553 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA18959,NA18976 nsv529044 12 117993208 117995150 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705760 S 2026 0 1 "" nsv455725 12 117995150 118021285 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533222 S 1557 0 1 "" 1780854538_A nsv521985 12 118000123 118002108 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694116 S 2026 0 1 "" nsv902 12 118038832 118083860 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9085 S 9 0 1 "" NA12156 nsv832528 12 118100931 118256121 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450034 S 95 1 0 "" nsv455726 12 118200502 118228385 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533223 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01378 nsv832529 12 118326098 118534366 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450035 S 95 0 1 "" nsv515563 12 118448591 118454032 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv670907,nssv705689,nssv670532,nssv689375,nssv691181,nssv651853,nssv670264,nssv662793,nssv662244,nssv659353,nssv655961,nssv667838,nssv653151,nssv671605,nssv660954,nssv666362,nssv676820,nssv673275,nssv652740,nssv687358,nssv659658,nssv676545,nssv685397,nssv683396,nssv662980 M 2026 0 25 "" nsv437156 12 118450731 118457721 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467037 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA12707 nsv442290 12 118451607 118453481 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv510575 12 118765883 118900210 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622665,nssv622666 M 4 0 1 "" NA18994 nsv510322 12 118796991 118802991 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621390 S 4 0 1 "" NA15510 nsv455728 12 118818283 118859015 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533224 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00572 nsv510323 12 118922199 118928199 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624131,nssv618379 M 4 0 2 "" CHM,NA18994 nsv903 12 118955466 118961847 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2016 S 9 1 0 "" NA18555 nsv7237 12 118961201 118971740 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4055 S 9 0 0 "" NA12878 nsv519657 12 118996416 119138810 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696976 S 2026 0 1 "" nsv832530 12 119048789 119220895 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450036 S 95 0 1 "" nsv904 12 119093709 119095560 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6537 S 9 1 0 "" NA12156 nsv7238 12 119126760 119145243 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1121 S 9 0 0 "" NA19240 nsv905 12 119144568 119186084 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9086,nssv1122 M 9 2 0 "" NA12156,NA19240 nsv518764 12 119210633 119213237 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696214 S 2026 0 1 "" nsv509482 12 119335640 119395636 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620979,nssv623634 M 4 2 0 "" NA15510,NA18994 nsv906 12 119436403 119481161 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9087 S 9 0 1 "" NA12156 nsv907 12 119480817 119515397 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2891 S 9 1 0 "" NA18555 nsv521928 12 119504448 120257468 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694698 S 2026 1 0 "" nsv908 12 119801305 119835375 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9089 S 9 1 0 "" NA12156 dgv529e1 12 119878565 120047533 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv296,essv481 M 271 0 0 "" NA18952 nsv832531 12 119903215 120066952 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450037,nssv1450038 M 95 2 0 "" nsv442291 12 119998666 120001223 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv515743 12 120003066 120004551 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv680338,nssv664647,nssv673600,nssv660885,nssv660584,nssv663121,nssv683584 M 2026 0 7 "" nsv455731 12 120130974 120149894 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533226 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01174 esv32620 12 120284481 120284589 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98837 S 51 0 1 "" 21606 nsv509483 12 120360536 120417893 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619615 S 4 1 0 "" NA10860 nsv909 12 120414511 120422373 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2892 S 9 1 0 "" NA18555 nsv527988 12 120577313 120579514 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704508 S 2026 0 1 "" esv33181 12 120696873 120697341 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93745 S 51 0 1 "" 21972 nsv911 12 120697244 120742145 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5456 S 9 0 1 "" NA19129 nsv520973 12 120727826 120729938 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv679074,nssv680737 M 2026 0 2 "" nsv912 12 120742411 120774625 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9977 S 9 1 0 "" NA18956 nsv527450 12 120944010 121201411 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703891 S 2026 0 1 "" nsv53703 12 121535227 121535555 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv72281 M 24 "" nsv53263 12 121713856 121718377 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71841 M 24 "" nsv913 12 121714912 121741729 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2017 S 9 1 0 "" NA18555 nsv517200 12 121836931 122179378 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv685197,nssv692845,nssv654990,nssv678468,nssv701966,nssv681711,nssv665382,nssv667421,nssv659493,nssv653995,nssv652166,nssv691747,nssv691449,nssv669548,nssv669422,nssv700220,nssv673842,nssv651670,nssv663666,nssv683684,nssv685660,nssv702811,nssv661066,nssv698769,nssv668720,nssv663538,nssv656945,nssv667934,nssv672586,nssv693398,nssv684591,nssv687393,nssv661596,nssv660171,nssv672825,nssv657836,nssv656201,nssv652303,nssv688327,nssv668488,nssv674525,nssv659265,nssv673986,nssv655520,nssv694009 M 2026 0 45 "" nsv52669 12 121862644 121862767 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71247 M 24 "" nsv52581 12 121862830 121862984 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71159 M 24 "" nsv7239 12 121871405 121896647 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9289 S 9 0 0 "" NA18517 dgv22n68 12 121920807 122114170 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH nsv832532,nsv832533 M 95 0 4 "" nsv455732 12 121952453 122099718 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533227 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01003 nsv914 12 121986789 122018125 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5457 S 9 1 0 "" NA19129 esv2422416 12 122534556 122610569 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161444 S 181 1 0 "" ND01703 dgv530e1 12 122635002 122720736 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv22281,essv22803,esv1366 M 271 0 0 "" NA12753,NA12762 nsv442292 12 122639927 122720734 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" esv35148 12 122644000 122721000 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6978885,essv6986739 M 771 1 0 "" NA12753 nsv524660 12 122644863 122719318 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700628 S 2026 1 0 "" nsv455733 12 122644863 122720736 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533228 S 1557 1 0 "" NINDS_10 nsv832534 12 122682485 122759491 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450047,nssv1450044,nssv1450046,nssv1450045 M 95 0 4 "" nsv519344 12 122696783 122719318 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv661741,nssv655521 M 2026 2 0 "" nsv522321 12 122908830 122949516 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695101 S 2026 0 1 "" nsv915 12 122910437 122944679 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4056 S 9 1 0 "" NA12878 nsv509484 12 122916085 122934910 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619617,nssv618096 M 4 2 0 "" CHM,NA10860 nsv520633 12 123073274 123208085 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697529 S 2026 1 0 "" nsv523233 12 123086683 123090138 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698956 S 2026 0 1 "" nsv518962 12 123086683 123108326 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696429 S 2026 0 1 "" nsv53136 12 123233882 123233998 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71714 M 24 "" nsv818930 12 123265870 123401013 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415693 S 112 1 0 "" NA12248 nsv53622 12 123320701 123320820 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv72200 M 24 "" nsv832535 12 123336234 123510109 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450048,nssv1450049 M 95 2 0 "" nsv916 12 123346466 123353661 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1123 S 9 1 0 "" NA19240 nsv455737 12 123358265 123397467 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533229 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01351 nsv455738 12 123384124 123410129 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533230 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00977 nsv832538 12 123391292 123572267 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450055,nssv1450053,nssv1450054,nssv1450051,nssv1450062,nssv1450057,nssv1450056,nssv1450060,nssv1450059,nssv1450058,nssv1450064,nssv1450063,nssv1450065,nssv1450052 M 95 0 14 "" nsv832539 12 123496479 123698389 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450066 S 95 0 1 "" nsv455739 12 123508805 123530022 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533231 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00438 nsv52719 12 123809806 123812589 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71297 M 24 "" nsv520994 12 123936886 123971316 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv684095,nssv679465,nssv701344 M 2026 1 2 "" nsv509485 12 124000367 124035180 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619618 S 4 1 0 "" NA10860 nsv524395 12 124036087 124036423 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700313 S 2026 0 1 "" nsv519030 12 124176577 124181282 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696499 S 2026 0 1 "" nsv917 12 124307269 124332838 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4057,nssv2894 M 9 2 0 "" NA12878,NA18555 nsv509486 12 124318365 124330123 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620980 S 4 1 0 "" NA15510 nsv507680 12 124321895 124327895 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623127 S 4 1 0 "" NA18994 nsv832540 12 124356543 124541682 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450067 S 95 1 0 "" nsv918 12 124362612 124397906 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1124 S 9 1 0 "" NA19240 nsv832541 12 124441811 124635201 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450068 S 95 1 0 "" nsv518416 12 124495348 124513082 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695851 S 2026 0 1 "" nsv919 12 124642595 124676729 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2895 S 9 1 0 "" NA18555 nsv920 12 124702475 124735818 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9090 S 9 1 0 "" NA12156 nsv437772 12 124728347 124736141 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467653 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19132 nsv438239 12 124731647 124732838 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470554,nssv470555 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA19131,NA19132 esv33967 12 124742456 124749993 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93334 S 51 1 0 "" 22170 nsv522232 12 124994630 125007700 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695010 S 2026 0 1 "" nsv922 12 125119842 125153083 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9091 S 9 1 0 "" NA12156 nsv528567 12 125200545 125205226 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705186 S 2026 0 1 "" nsv923 12 125278456 125317319 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1125,nssv2018 M 9 0 2 "" NA18555,NA19240 nsv924 12 125291998 125331771 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1126,nssv6538,nssv5458 M 9 3 0 "" NA12156,NA19129,NA19240 nsv515762 12 125294813 125754386 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv667106,nssv674629,nssv662267,nssv659629,nssv656138,nssv701139,nssv696305,nssv693028,nssv665473,nssv704380,nssv679852,nssv682569,nssv664706,nssv661670,nssv695313,nssv690339,nssv681867 M 2026 5 12 "" nsv510594 12 125298159 125315886 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622667,nssv618897 M 4 0 2 "" NA10860,NA18994 dgv531e1 12 125324021 125362245 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv9845,esv1315 M 271 0 0 "" NA19144 nsv437773 12 125343370 125357985 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467654 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19145 nsv818931 12 125345007 125350842 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418201,nssv1418202 M 112 0 2 "" NA19144,NA19145 nsv9006 12 125345717 125354415 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22138 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19144 nsv442293 12 125347329 125354088 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" essv14677 12 125348559 125357285 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19145 nsv510324 12 125427588 125433588 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624132,nssv618380,nssv621391,nssv622221 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv53717 12 125429997 125430310 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv72295 M 24 "" nsv925 12 125511094 125533384 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6539 S 9 0 1 "" NA12156 nsv455743 12 125521321 125529684 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533233 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00019 nsv442657 12 125525218 125529470 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv455744 12 125819806 125870869 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533234 S 1557 0 1 "" 1788485381_A nsv832542 12 125821849 125976621 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450070,nssv1450069,nssv1450071 M 95 1 2 "" nsv509487 12 125826221 125881744 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619619,nssv623636,nssv620981 M 4 3 0 "" NA10860,NA15510,NA18994 nsv926 12 125828962 125862796 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1127,nssv5459,nssv2896 M 9 3 0 "" NA18555,NA19129,NA19240 nsv517539 12 125833933 125842375 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv652305,nssv652817,nssv690390,nssv687043,nssv659521,nssv683001,nssv676294,nssv702870,nssv690754,nssv656202,nssv690192,nssv661293,nssv669549 M 2026 0 13 "" nsv507681 12 125844108 125850108 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617848 S 4 1 0 "" CHM nsv9007 12 125852405 126114323 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20854,nssv20546 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA10839,NA19007 nsv455745 12 125905124 125992006 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533235 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00608 dgv102n21 12 125931284 125939667 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv516861,nsv518440 M 2026 0 3 "" nsv832543 12 125997313 126154858 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450074 S 95 1 0 "" nsv521215 12 126008625 126018399 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697849 S 2026 0 1 "" nsv455746 12 126008625 126034401 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533236 S 1557 0 1 "" NINDS_167 nsv455747 12 126013316 126018399 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533237 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01074 nsv517707 12 126013316 126033511 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv691349,nssv687489,nssv659218,nssv659327,nssv660450,nssv652194,nssv675809,nssv680738,nssv665968,nssv663236,nssv672415,nssv681420,nssv667264,nssv684751,nssv686636,nssv668006,nssv654263,nssv661531,nssv668380,nssv662449,nssv655684,nssv681778,nssv668303,nssv669170,nssv661829,nssv689064,nssv665490,nssv659978,nssv670306,nssv689602,nssv658009,nssv668263,nssv682536,nssv680141,nssv690475,nssv653592,nssv690773,nssv682395,nssv676681,nssv654221,nssv657657,nssv679710 M 2026 0 42 "" nsv832544 12 126034719 126195580 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450075 S 95 0 1 "" nsv522129 12 126056275 126067972 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694134 S 2026 0 1 "" nsv515981 12 126067972 126118994 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv660211,nssv691733,nssv659049,nssv679138,nssv657837,nssv654565,nssv661139,nssv659354,nssv676633,nssv655803,nssv668264,nssv665578 M 2026 0 12 "" nsv442658 12 126100573 126110468 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv437774 12 126109897 126129494 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467655 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18500 nsv818932 12 126110227 126112528 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417687 S 112 0 1 "" NA18999 nsv442295 12 126117567 126129255 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv438240 12 126118994 126123162 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470557,nssv470556 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA18500,NA18501 nsv511023 12 126130869 126183883 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624340 S 4 0 0 "" NA18994 nsv927 12 126143401 126172802 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10911,nssv2019,nssv9978,nssv1128,nssv6540,nssv5461 M 9 6 0 "" NA12156,NA15510,NA18555,NA18956,NA19129,NA19240 nsv88 12 126154226 126167818 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv88 S 1 1 0 "" NA15510 nsv53568 12 126185307 126185632 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv72146 M 24 "" nsv832545 12 126195589 126349242 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450077,nssv1450076 M 95 2 0 "" nsv928 12 126208465 126243631 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1129 S 9 1 0 "" NA19240 nsv507682 12 126328536 126334536 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619094,nssv620524 M 4 2 0 "" NA10860,NA15510 nsv832546 12 126330417 126491368 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450078 S 95 1 0 "" nsv523135 12 126381567 126382761 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698840 S 2026 0 1 "" nsv528793 12 126448670 126598685 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705464 S 2026 0 1 "" nsv524310 12 126768788 126770455 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700212 S 2026 0 1 "" nsv516688 12 126780240 126790509 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv673023,nssv662755,nssv670160 M 2026 0 3 "" nsv53491 12 126915947 126915947 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv72069 M 24 "" nsv53607 12 126915970 126915970 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv72185 M 24 "" nsv818934 12 126950615 126954523 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416789,nssv1416788 M 112 0 2 "" NA19159,NA19161 nsv525984 12 127058492 127060041 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702203 S 2026 0 1 "" nsv525640 12 127264075 127266084 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701794 S 2026 0 1 "" nsv510325 12 127271856 127277856 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622222 S 4 0 1 "" NA10860 nsv437775 12 127312655 127347338 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467656 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19161 nsv9008 12 127321371 127326485 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20808,nssv22168,nssv23153 M 31 3 0 Samples from several populations that are part of the HapMap project. "" NA18504,NA18564,NA19144 nsv438241 12 127322882 127331499 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470558,nssv470559 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA19160,NA19161 esv33712 12 127332577 127340094 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv92557 S 51 1 0 "" 22233 nsv832547 12 127382354 127573941 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450079 S 95 1 0 "" nsv52720 12 127394906 127394906 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71298 M 24 "" nsv527302 12 127463870 127479698 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703720 S 2026 0 1 "" nsv518258 12 127481294 127483805 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695688 S 2026 0 1 "" dgv532e1 12 127597185 127906190 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv37,essv19290,essv19513 M 271 0 0 "" NA10838,NA12864 nsv52909 12 127667418 127667528 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71487 M 24 "" nsv520287 12 127697569 127699555 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv662401,nssv692744,nssv673987,nssv677721 M 2026 0 4 "" nsv455749 12 127733945 127791704 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533238 S 1557 1 0 "" NINDS_29 esv2751039 12 127746927 127794124 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6983462,essv6986442 M 771 1 0 "" BEC_658 nsv832549 12 127748590 127945979 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450080 S 95 0 1 "" nsv523786 12 127751653 127759436 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699613 S 2026 0 1 "" dgv212n27 12 127751653 127791704 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv455750,nsv455751 M 1557 2 0 "" HGDP00243,NINDS_238 nsv526547 12 127751653 127791704 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702861 S 2026 1 0 "" nsv522054 12 127753610 127756206 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694824 S 2026 0 1 "" nsv818935 12 127753610 127757177 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416185 S 112 0 1 "" NA12891 nsv455754 12 127753754 127767789 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533241 S 1557 0 1 "" 1782681112_A nsv9009 12 127754773 127758426 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21607 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA11830 esv2751040 12 127755000 127768000 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6982743,essv6982742 M 771 1 0 "" BEC_587 nsv442296 12 127755389 127757425 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv455755 12 127755393 127757893 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533242 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01027 nsv517182 12 127755393 127759436 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv692531,nssv687206,nssv653948,nssv661364,nssv691899,nssv684951,nssv671742,nssv690978,nssv655257,nssv678316,nssv673822,nssv684452,nssv678805,nssv702207,nssv668241,nssv692958,nssv661649,nssv671996,nssv684858,nssv652742,nssv673290,nssv664348,nssv668381,nssv678293,nssv654093,nssv658166,nssv669009,nssv686910 M 2026 0 28 "" nsv9010 12 127775787 127777791 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23959 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18502 nsv53683 12 127823608 127823608 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv72261 M 24 "" nsv521048 12 127905303 127913857 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697753 S 2026 0 1 "" nsv516077 12 127911498 127913857 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv677667,nssv687490,nssv662311,nssv668538,nssv666044,nssv656324,nssv686943,nssv659366,nssv682797,nssv679579,nssv671889,nssv685035,nssv684639,nssv695943,nssv655443,nssv679075,nssv673666,nssv659156,nssv691102,nssv667223,nssv680422,nssv666892 M 2026 0 22 "" nsv818936 12 127911498 127913857 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417781,nssv1417783 M 112 0 2 "" NA10863,NA12234 nsv929 12 127921892 127950290 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2020 S 9 1 0 "" NA18555 nsv526688 12 127980197 128040847 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703022 S 2026 1 0 "" dgv213n27 12 128019791 128037742 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv455760,nsv455761,nsv455758,nsv455759 M 1557 4 0 "" HGDP00607,HGDP00624,HGDP00643,HGDP00738 nsv526263 12 128024911 128040847 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702535 S 2026 1 0 "" nsv53601 12 128044306 128044306 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv72179 M 24 "" nsv53596 12 128044365 128044365 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv72174 M 24 "" nsv525882 12 128055509 128064826 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702082 S 2026 0 1 "" nsv930 12 128075129 128106109 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6541 S 9 0 1 "" NA12156 nsv517810 12 128100310 128175051 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695215 S 2026 0 1 "" nsv832550 12 128109157 128300673 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450081 S 95 0 1 "" nsv528720 12 128259725 128263926 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705371 S 2026 0 1 "" nsv53551 12 128365569 128365881 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv72129 M 24 "" nsv52627 12 128408800 128408800 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71205 M 24 "" nsv507683 12 128415182 128421182 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617849,nssv623128 M 4 2 0 "" CHM,NA18994 nsv518434 12 128417802 128418827 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695870 S 2026 0 1 "" essv11539 12 128471344 128658697 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19173 dgv533e1 12 128471344 129640456 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv5614,esv520,essv5728 M 271 0 0 "" NA18593 nsv9011 12 128477061 128485707 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20995 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18980 nsv53089 12 128489426 128489549 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71667 M 24 "" nsv931 12 128497488 128532556 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1130 S 9 1 0 "" NA19240 esv34208 12 128537669 129613307 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6990392,essv6979652,essv6979651,essv6986921,essv6986922 M 771 1 0 "" NA18593 nsv818937 12 128537793 129255152 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417270 S 112 1 0 "" NA18593 nsv933 12 128543200 128570931 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9979 S 9 1 0 "" NA18956 nsv9012 12 128583022 128588674 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21509 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19173 nsv442297 12 128583437 128585021 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv517682 12 128584032 128587112 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv673782,nssv679421,nssv652834,nssv676733,nssv668662,nssv661400 M 2026 0 6 "" nsv53131 12 128585184 128585514 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71709 M 24 "" nsv9013 12 128601341 128603421 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19312,nssv23311,nssv24500,nssv23181,nssv21227,nssv20690,nssv20576 M 31 0 7 Samples from several populations that are part of the HapMap project. "" NA18504,NA18563,NA18853,NA18860,NA18942,NA19007,NA19240 nsv934 12 128648179 128681798 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5462 S 9 1 0 "" NA19129 nsv9015 12 128674513 128681457 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21025 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18980 nsv832551 12 128730896 128936955 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450083,nssv1450089,nssv1450087,nssv1450082,nssv1450085,nssv1450086,nssv1450088 M 95 0 7 "" nsv53735 12 128756630 128756630 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv72313 M 24 "" nsv9016 12 128819579 128823426 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20838 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18564 nsv935 12 128863738 128908706 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5463 S 9 0 1 "" NA19129 nsv9017 12 128863938 128871924 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18821,nssv19069,nssv22198,nssv19712,nssv20806,nssv21539 M 31 0 6 Samples from several populations that are part of the HapMap project. "" NA07029,NA12872,NA18552,NA18572,NA19144,NA19173 nsv9018 12 128919049 128927162 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26146 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19221 nsv9019 12 128944824 128947307 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20606,nssv20154 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18975,NA19007 nsv520701 12 129073723 129075413 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv689090,nssv674332 M 2026 0 2 "" nsv832552 12 129115490 129283340 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450090 S 95 1 0 "" dgv214n27 12 129123536 129155189 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv455764,nsv455762 M 1557 0 2 "" HGDP00894,HGDP00995 nsv9020 12 129132832 129145870 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26165 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19221 nsv515621 12 129234257 129238833 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv687577,nssv691900,nssv664138 M 2026 0 3 "" nsv9021 12 129288331 129291485 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23339 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19240 nsv455765 12 129350735 129409227 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533250 S 1557 1 0 "" 1780854341_A nsv469863 12 129359443 129564222 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649884 M 265 0 0 Samples from several populations that are part of the HapMap project. "" nsv936 12 129376018 129404355 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5464 S 9 1 0 "" NA19129 nsv509488 12 129387430 129405928 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623637,nssv618097,nssv619620 M 4 3 0 "" CHM,NA10860,NA18994 nsv818938 12 129391731 129436096 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417271 S 112 1 0 "" NA18593 nsv9022 12 129395008 129403621 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24186,nssv21608,nssv26214,nssv21569,nssv21055,nssv24016,nssv24058,nssv20184,nssv19772,nssv20836 M 31 6 4 Samples from several populations that are part of the HapMap project. "" NA07029,NA12155,NA18502,NA18552,NA18972,NA18975,NA18980,NA19132,NA19173,NA19221 nsv509489 12 129422494 129503132 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623638 S 4 1 0 "" NA18994 nsv937 12 129427981 129453884 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9980 S 9 1 0 "" NA18956 nsv832553 12 129429905 129619085 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450091,nssv1450092,nssv1450093 M 95 0 3 "" nsv455766 12 129445576 129477334 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533251 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00372 nsv818939 12 129497965 129612351 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417273 S 112 1 0 "" NA18593 nsv523185 12 129526348 129534492 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698899 S 2026 0 1 "" nsv509490 12 129635063 129660254 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623639 S 4 1 0 "" NA18994 nsv53644 12 129636007 129636081 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv72222 M 24 "" nsv938 12 129646048 129677487 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9845,nssv6543,nssv4058 M 9 3 0 "" NA12156,NA12878,NA18507 nsv53218 12 129650870 129650963 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71796 M 24 "" esv33084 12 129657577 129658606 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv95089,essv95283,essv92758,essv96319,essv94171 M 51 0 5 "" 21721,21872,21944,22371,22394 nsv53842 12 129669751 129669751 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv72420 M 24 "" nsv437776 12 129671864 129684019 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467657 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19205 nsv438242 12 129672881 129674990 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470561,nssv470560 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA19203,NA19205 nsv442659 12 129673189 129675249 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv528135 12 129692716 129694658 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704680 S 2026 0 1 "" nsv515679 12 129741631 129743731 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv662729,nssv693327,nssv669061,nssv679371,nssv664377,nssv664349,nssv673843,nssv656431 M 2026 0 8 "" nsv939 12 129796125 129831001 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1131 S 9 1 0 "" NA19240 nsv527536 12 129839094 129855053 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703996 S 2026 0 1 "" nsv455767 12 129904194 129958064 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533252 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00863 nsv53443 12 129914137 129914220 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv72021 M 24 "" nsv524291 12 129948231 129953145 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700191 S 2026 0 1 "" nsv519628 12 129964324 129968416 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv679372,nssv657232,nssv662292,nssv694210,nssv704891 M 2026 0 5 "" nsv517271 12 130012921 130391170 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv682589,nssv686673,nssv664230,nssv678469,nssv658207,nssv669995,nssv663067,nssv691721,nssv673667,nssv676231,nssv657412,nssv654689,nssv666204,nssv682514,nssv684193,nssv651771,nssv654172,nssv695689,nssv690560,nssv683257,nssv674585,nssv692914,nssv690812,nssv662354,nssv684298,nssv684613,nssv686548,nssv658143,nssv671467,nssv687319,nssv677891,nssv680764,nssv675208,nssv659494,nssv654439,nssv679977,nssv675292,nssv684269,nssv677981,nssv689967,nssv660451,nssv670383 M 2026 3 39 "" nsv940 12 130093015 130126367 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1132 S 9 1 0 "" NA19240 dgv9e196 12 130122517 130201659 CNV Deletion Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array esv2422313,esv2422207 M 181 0 2 "" ND01493,ND01570 nsv442298 12 130213364 130248196 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv832554 12 130239429 130460000 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450096,nssv1450094 M 95 0 2 "" nsv455768 12 130240722 130299919 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533253 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00991 dgv534e1 12 130248171 130353185 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv19310,essv19365 M 271 0 0 "" NA07019,NA07022 dgv535e1 12 130248171 130935124 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv722,essv7079,essv4942 M 271 0 0 "" NA18537 nsv437157 12 130252265 130302540 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467038 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA07019 dgv72e55 12 130252265 130364452 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv2751041,esv34527 M 771 0 2 "" BEC_383,NA07022 dgv215n27 12 130255197 130272940 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv455771,nsv455770,nsv455772 M 1557 0 3 "" 1780862435_A,HGDP00060,NINDS_242 dgv216n27 12 130255197 130299919 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv455776,nsv455773,nsv455778,nsv455779,nsv455792,nsv455795,nsv455777,nsv455793,nsv455791 M 1557 0 9 "" 1780862312_A,1782681095_A,HGDP00637,HGDP00647,HGDP01074,HGDP01077,HGDP01267,HGDP01269,NINDS_236 nsv438243 12 130255197 130300598 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470562,nssv470564 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA07019,NA07022 dgv217n27 12 130255197 130355212 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv455781,nsv455790,nsv455782,nsv455783,nsv455794,nsv455780 M 1557 0 6 "" 1782681023_A,HGDP00622,HGDP00731,HGDP01076,HGDP01253,NINDS_82 esv32837 12 130255983 130344257 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99125,essv92766,essv94197 M 51 1 2 "" 21938,21944,22394 nsv9023 12 130257493 130260103 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21637,nssv18851,nssv20636,nssv19129,nssv20884,nssv19025 M 31 0 6 Samples from several populations that are part of the HapMap project. "" NA10839,NA10847,NA11830,NA12872,NA18572,NA19007 nsv7240 12 130264922 130811561 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9846,nssv6544 M 9 0 0 "" NA12156,NA18507 nsv469686 12 130269519 130430745 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649617 M 265 0 2 Samples from several populations that are part of the HapMap project. "" nsv469651 12 130269521 130437504 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649579 M 265 0 0 Samples from several populations that are part of the HapMap project. "" nsv471672 12 130269522 130437504 CNV Gain Sharp et al 2005 15918152 BAC_aCGH,FISH Eichler Segmental Duplication BAC array nssv549895 S 48 1 0 "" NA10969 nsv9024 12 130282349 130284042 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20914 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA10839 esv34554 12 130294045 130958577 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6979365,essv6979364,essv6979363,essv6979362,essv6979361,essv6986842 M 771 1 0 "" NA18537 nsv9026 12 130299668 130302148 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24043 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18502 nsv9027 12 130315089 130321485 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26233,nssv24085,nssv21115,nssv20214,nssv20944,nssv19802,nssv21667,nssv23209,nssv20720 M 31 8 1 Samples from several populations that are part of the HapMap project. "" NA07029,NA10839,NA11830,NA18504,NA18853,NA18975,NA18980,NA19132,NA19221 nsv442660 12 130319048 130321327 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv536e1 12 130322135 130350528 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv958,essv1041,essv7653 M 271 0 0 "" NA18632,NA18975,NA18981 nsv9028 12 130322865 130350104 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20244,nssv26251,nssv20274,nssv21257 M 31 0 3 Samples from several populations that are part of the HapMap project. "" NA18563,NA18975,NA19221 nsv455798 12 130324939 130333683 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533274 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01251 dgv19n64 12 130324939 130339814 CNV Loss Wang_et_al_2007 17921354 SNP_array nsv818942,nsv818940 M 112 0 2 "" NA18856,NA18992 nsv818941 12 130324939 130355212 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417243 S 112 0 1 "" NA18577 nsv442661 12 130341093 130350634 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv818943 12 130355212 130446153 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417127 S 112 1 0 "" NA18537 dgv537e1 12 130371694 130509579 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv11260,essv16904 M 271 0 0 "" NA19204,NA19205 nsv53398 12 130376748 130376855 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71976 M 24 "" nsv455799 12 130380353 130786477 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533275 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01228 nsv9029 12 130390718 130396157 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26269 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19221 nsv53119 12 130392694 130392748 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71697 M 24 "" nsv437777 12 130420464 130496856 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467658 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19205 nsv442299 12 130425002 130483625 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" essv9956 12 130425003 130457297 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19204 nsv438244 12 130425003 130471387 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470566,nssv470565 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA19204,NA19205 nsv517201 12 130425270 130470283 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv651929,nssv679489,nssv653996,nssv667140,nssv701684,nssv655750,nssv667245,nssv657037,nssv681798 M 2026 1 8 "" nsv9030 12 130428492 130439095 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21105 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18537 nsv53573 12 130438666 130438666 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv72151 M 24 "" nsv53306 12 130442860 130443754 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71884 M 24 "" nsv9031 12 130445294 130447143 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21135 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18537 nsv9032 12 130461895 130477879 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21165 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18537 nsv9033 12 130493061 130508974 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21195 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18537 nsv517841 12 130516217 130520598 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694170 S 2026 0 1 "" nsv9034 12 130536129 130539045 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24212 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18972 nsv455800 12 130698455 130790890 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533276 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00991 nsv9035 12 130722182 130723942 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20780 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18853 nsv9037 12 130723200 130725729 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24238 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18972 nsv9038 12 130726076 130728370 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21145 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18980 nsv509492 12 130728379 130778763 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618098,nssv619621,nssv618099,nssv620982 M 4 3 0 "" CHM,NA10860,NA15510 dgv218n27 12 130729388 130786477 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv455801,nsv455802 M 1557 2 0 "" HGDP00376,HGDP00433 nsv941 12 130763382 130786863 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9981,nssv9092 M 9 2 0 "" NA12156,NA18956 essv7484 12 130769865 130845280 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18561 nsv9039 12 130776667 130778660 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19342,nssv20666,nssv21287,nssv20304,nssv24264,nssv21638,nssv21225 M 31 3 4 Samples from several populations that are part of the HapMap project. "" NA12155,NA18537,NA18563,NA18942,NA18972,NA18975,NA19007 nsv9040 12 130779031 130796426 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26287,nssv21317,nssv21255 M 31 3 0 Samples from several populations that are part of the HapMap project. "" NA18537,NA18563,NA19221 nsv442300 12 130781114 130786945 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv818945 12 130781897 130790890 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417656,nssv1417252 M 112 2 0 "" NA18577,NA18992 nsv818946 12 130781897 130911031 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417129 S 112 1 0 "" NA18537 nsv437159 12 130790477 130821104 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467040 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA10847 nsv437778 12 130790890 130810845 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467659 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19120 nsv438245 12 130797133 130801985 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470575,nssv470572,nssv470577,nssv470578,nssv470569,nssv470571,nssv470567,nssv470568,nssv470573,nssv470570,nssv470576 M 269 0 11 Samples from several populations that are part of the HapMap project. "" NA10856,NA11829,NA11994,NA12006,NA12154,NA12751,NA12763,NA19119,NA19120,NA19201,NA19202 nsv9041 12 130798268 130804396 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20696,nssv23367,nssv24320,nssv20868,nssv21175,nssv19372,nssv21347,nssv20334,nssv21697,nssv21285,nssv19159,nssv23237,nssv19055,nssv20974,nssv21639 M 31 1 14 Samples from several populations that are part of the HapMap project. "" NA10839,NA10847,NA11830,NA12740,NA18504,NA18537,NA18563,NA18564,NA18572,NA18942,NA18972,NA18975,NA18980,NA19007,NA19240 nsv442662 12 130798814 130799565 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" esv32930 12 130799188 130801346 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101548,essv94619,essv99030,essv96188,essv96655,essv93503,essv94937,essv96467,essv99301,essv98392 M 51 0 10 "" 21603,21932,21938,22007,22011,22128,22231,22261,22275,22352 nsv9042 12 130817974 130826471 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21315 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18537 nsv9043 12 130828952 130830519 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21668,nssv26304 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA12155,NA19221 nsv9044 12 130834279 130913895 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21345 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18537 nsv455803 12 130899373 131088474 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533279 S 1557 1 0 "" 1780862435_A nsv832555 12 130926419 131078868 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450099,nssv1450102,nssv1450097,nssv1450098,nssv1450101,nssv1450100 M 95 0 6 "" esv2751042 12 130926914 131156176 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6984953,essv6984952,essv6988871,essv6984951,essv6987123 M 771 1 0 "" SPC_20 nsv52992 12 130929949 130929949 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71570 M 24 "" nsv455804 12 130993089 131085763 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533280 S 1557 0 1 "" 1780862021_A nsv9045 12 131020307 131057675 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21669,nssv22228,nssv19189,nssv20643,nssv21375,nssv18610,nssv24070,nssv20496,nssv21599,nssv26321,nssv23265,nssv19115,nssv19832,nssv18881 M 31 12 2 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10847,NA10863,NA12740,NA12802,NA12872,NA18502,NA18504,NA18537,NA18572,NA19144,NA19173,NA19221 nsv437780 12 131027646 131044363 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467661 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19194 nsv942 12 131056944 131085825 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1133 S 9 1 0 "" NA19240 nsv509493 12 131243398 131316526 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620983,nssv619622,nssv623640 M 4 3 0 "" NA10860,NA15510,NA18994 dgv103n21 12 131267826 131629032 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv527956,nsv518033 M 2026 0 2 "" nsv944 12 131289291 131315258 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1134,nssv6545 M 9 2 0 "" NA12156,NA19240 nsv53069 12 131299666 131299753 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71647 M 24 "" nsv528119 12 131325550 131369099 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704662 S 2026 0 1 "" nsv520897 12 131350092 131369099 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv677213,nssv679334 M 2026 0 2 "" nsv53189 12 131429780 131429780 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71767 M 24 "" nsv52579 12 131434518 131434589 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71157 M 24 "" nsv52990 12 131481567 131481567 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71568 M 24 "" nsv52922 12 131549496 131549549 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71500 M 24 "" nsv53062 12 131568627 131569099 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71640 M 24 "" nsv509494 12 131608072 131713235 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619624 S 4 1 0 "" NA10860 nsv455805 12 131619123 131655264 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533281 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01310 nsv528778 12 131632810 131634854 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705444 S 2026 0 1 "" nsv528876 12 131632810 131636496 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705556 S 2026 0 1 "" nsv52980 12 131656579 131656658 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71558 M 24 "" nsv455806 12 131703930 131801533 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533282 S 1557 0 1 "" 1780862346_A nsv455807 12 131727839 131771696 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533283 S 1557 0 1 "" 1780862444_A nsv53631 12 131750624 131750785 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv72209 M 24 "" nsv455809 12 131765333 131792758 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533285 S 1557 0 1 "" 1780862093_A nsv455810 12 131788767 131796023 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533286 S 1557 0 1 "" 1780862557_A esv2422284 12 131791184 131895857 CNV Deletion Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161513 S 181 0 1 "" ND03355 nsv52739 12 131807800 131807860 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71317 M 24 "" nsv53840 12 131914623 131914623 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv72418 M 24 "" nsv53329 12 131917332 131917394 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71907 M 24 "" nsv455811 12 131956521 132001304 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533287 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01097 nsv52999 12 131976728 131976728 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv71577 M 24 "" nsv53567 12 131992505 131992586 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv72145 M 24 "" nsv455812 12 132000348 132073859 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533288 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00232 dgv538e1 12 132095571 132344463 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv10741,esv555 M 271 0 0 "" NA18523 nsv945 12 132125292 132153559 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6546 S 9 1 0 "" NA12156 nsv509495 12 132132278 132169231 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618100,nssv623641,nssv619625,nssv620984 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv9046 12 132136592 132145322 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26338 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19221 nsv528637 12 132136762 132141477 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705268 S 2026 0 1 "" nsv455813 12 132174424 132205981 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533289 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00086 dgv219n27 12 132188413 132209466 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv455814,nsv455815 M 1557 2 0 "" HGDP00700,HGDP01259 nsv525745 12 132188413 132226213 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701912 S 2026 1 0 "" nsv438246 12 132194994 132209677 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470581,nssv470580,nssv470582,nssv470579 M 269 0 4 Samples from several populations that are part of the HapMap project. "" NA06985,NA10838,NA11832,NA11995 nsv9048 12 132219825 132227655 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24346 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18972 nsv9049 12 132248918 132250183 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24152,nssv24097,nssv23293,nssv22258 M 31 4 0 Samples from several populations that are part of the HapMap project. "" NA18502,NA18504,NA18517,NA19144 essv8522 12 132249701 132344463 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18523 nsv518970 12 132287699 132389146 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696438 S 2026 1 0 "" dgv220n27 12 132294671 132389146 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv455817,nsv455816 M 1557 2 0 "" 1780862379_A,HGDP00798 nsv455818 12 132314851 132389146 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533294 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00608 nsv9050 12 132327728 132355554 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23425 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19240 nsv442301 12 132328791 132388539 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv539e1 13 17918001 18201680 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv20868,essv139 M 271 0 0 "" NA12145,NA18968 dgv540e1 13 17918001 18358616 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv4829,essv20515,esv749 M 271 0 0 "" NA12716,NA18540 dgv73e55 13 17960300 18252675 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv34400,esv2751130,esv2751131 M 771 3 0 "" BEC_401,BEC_531,NA12716 dgv541e1 13 18008630 18176736 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv5491,essv19193,essv16032 M 271 0 0 "" NA12865,NA18501,NA18632 nsv832556 13 18012966 18189013 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450103 S 95 1 0 "" nsv442302 13 18041824 18165293 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv9051 13 18073177 18081072 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21727 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA11830 nsv9052 13 18094553 18101809 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18911 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA12872 essv23756 13 18110262 18190758 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA11994 nsv507684 13 18118257 18124257 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620525,nssv617850,nssv619095,nssv623129 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 dgv542e1 13 18204524 18348905 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv14247,essv21605,essv18913,essv19467,essv23746,essv8010,essv21081 M 271 0 0 "" NA10854,NA12155,NA12717,NA12750,NA12813,NA19100,NA19221 essv3828 13 18209780 18306095 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18953 nsv9053 13 18215850 18284290 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24112,nssv24526,nssv21698,nssv26355,nssv24124,nssv20866,nssv24372 M 31 5 2 Samples from several populations that are part of the HapMap project. "" NA12155,NA18502,NA18552,NA18860,NA18972,NA19132,NA19221 nsv947 13 18225570 18286700 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6547,nssv9952,nssv9982,nssv2023 M 9 0 4 "" NA12156,NA18507,NA18555,NA18956 nsv511024 13 18240383 18291046 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618623 S 4 0 0 "" CHM dgv543e1 13 18246805 18306095 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv18557,essv19362 M 271 0 0 "" NA07019,NA10851 dgv544e1 13 18246805 18358616 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv5074,essv5968,essv19316 M 271 0 0 "" NA12872,NA18552,NA18570 dgv43n17 13 18247140 18326184 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437160,nsv437781 M 60 0 2 "" NA12752,NA19205 nsv509496 13 18256521 18256521 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619626 S 4 1 0 "" NA10860 nsv948 13 18331634 18356265 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1137 S 9 1 0 "" NA19240 nsv507685 13 18343329 18349329 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623130 S 4 1 0 "" NA18994 nsv9054 13 18343911 18346445 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20526 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA10863 nsv9055 13 18352500 18361665 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23453 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19240 nsv455821 13 18439910 18446826 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533295 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00445 nsv455822 13 18439910 18524928 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533296 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00056 nsv455823 13 18509008 18538445 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533297 S 1557 1 0 "" NINDS_79 esv33571 13 18519060 18535941 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98889,essv100689,essv99802 M 51 3 0 "" 21606,21656,22086 nsv523647 13 18520143 18656799 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699448 S 2026 0 1 "" nsv522870 13 18605854 18642884 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698525 S 2026 1 0 "" nsv523978 13 18612717 18644610 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699833 S 2026 0 1 "" nsv949 13 18616647 18631399 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2897 S 9 1 0 "" NA18555 nsv527819 13 18630017 18632660 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704314 S 2026 0 1 "" nsv455824 13 18630017 18656911 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533298 S 1557 0 1 "" 1780862081_A nsv528089 13 18644610 18656911 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704625 S 2026 0 1 "" nsv482166 13 18645920 18653936 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558527 S 1 1 0 "" KB1 nsv455825 13 18649932 18656911 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533299 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00122 nsv515683 13 18650291 18656799 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv684348,nssv657529,nssv660212,nssv658222,nssv673372,nssv676195,nssv670198,nssv682537,nssv664379,nssv684270,nssv688548,nssv680274,nssv658042 M 2026 0 13 "" nsv511025 13 18840953 18891745 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621620 S 4 0 0 "" NA15510 nsv510326 13 18847521 18853521 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624134,nssv618381,nssv622223 M 4 0 3 "" CHM,NA10860,NA18994 nsv521073 13 18870233 18880162 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697769 S 2026 1 0 "" nsv510327 13 18871424 18877424 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618382,nssv622224,nssv624135 M 4 0 3 "" CHM,NA10860,NA18994 nsv469566 13 18874331 19030818 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649678 M 265 0 0 Samples from several populations that are part of the HapMap project. "" nsv523881 13 18884472 19081017 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699723 S 2026 1 0 "" nsv469567 13 18924331 19074977 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649679 M 265 0 0 Samples from several populations that are part of the HapMap project. "" nsv523915 13 18980107 19036930 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699758 S 2026 0 1 "" nsv950 13 18996690 19029226 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6548 S 9 1 0 "" NA12156 nsv523550 13 19001773 19008195 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699328 S 2026 1 0 "" nsv516945 13 19003471 19407203 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv653481,nssv662528,nssv662136,nssv670147,nssv683880,nssv696089,nssv672806,nssv662312,nssv675925,nssv685807,nssv690065,nssv705372,nssv673292,nssv703670,nssv691436,nssv654949 M 2026 5 11 "" nsv455826 13 19172844 19338020 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533300 S 1557 0 1 "" 1780862415_A nsv9056 13 19357555 19369675 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26371 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19221 nsv438247 13 19361867 19368071 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470587,nssv470589,nssv470584,nssv470591,nssv470583,nssv470586,nssv470590,nssv470588 M 269 0 8 Samples from several populations that are part of the HapMap project. "" NA18856,NA18857,NA19099,NA19100,NA19210,NA19211,NA19221,NA19222 nsv442663 13 19363397 19367459 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv832557 13 19382575 19554055 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450104 S 95 1 0 "" nsv455828 13 19494565 19562036 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533301 S 1557 0 1 "" NINDS_152 nsv523961 13 19535140 19562819 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699811 S 2026 0 1 "" nsv519367 13 19585179 19585836 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv658930,nssv656798,nssv663168,nssv655685 M 2026 0 4 "" nsv516427 13 19621127 19623636 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv691416,nssv668305 M 2026 0 2 "" esv2751132 13 19690082 20018804 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6990022,essv6989454,essv6984777,essv6984778,essv6984779,essv6990021 M 771 0 1 "" SPC_179 nsv527067 13 19808558 19810527 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703446 S 2026 0 1 "" nsv524401 13 19810067 19810527 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700320 S 2026 0 1 "" dgv221n27 13 19870553 19993720 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv455834,nsv455833 M 1557 0 2 "" HGDP00814,HGDP00821 esv34984 13 19870700 20014541 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6979325,essv6979326,essv6979327,essv6988154,essv6989085 M 771 0 1 "" NA18529 dgv545e1 13 19870722 20122478 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv5594,essv4114,esv548 M 271 0 0 "" NA18529 nsv517163 13 19873269 19875507 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv653664,nssv652889,nssv653643,nssv678002,nssv675723,nssv671927,nssv672044,nssv686486,nssv660327,nssv659709,nssv672890,nssv659189,nssv661403,nssv683141,nssv693161,nssv686832,nssv657413,nssv663209,nssv673704,nssv679692,nssv679673,nssv681369,nssv662810,nssv656325,nssv672980,nssv658710,nssv671768,nssv663515,nssv659980,nssv663123,nssv660825,nssv676983,nssv674554,nssv659294,nssv659961,nssv675225,nssv659738,nssv654667,nssv693372 M 2026 0 39 "" nsv818947 13 19873269 19993720 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417093 S 112 0 1 "" NA18529 nsv832558 13 20082300 20224807 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450105 S 95 0 1 "" esv33630 13 20103150 20110588 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv95863 S 51 1 0 "" 21911 nsv951 13 20225387 20252018 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5466 S 9 1 0 "" NA19129 dgv6e24 13 20229537 20230650 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH esv2750593,esv2750653,esv2750523,esv2750537,esv2750583,esv2750518,esv2750706,esv2750573,esv2750598,esv2750611,esv2750509,esv2750671,esv2750477,esv2750490,esv2750502,esv2750507,esv2750513,esv2750533,esv2750536,esv2750549,esv2750551,esv2750563,esv2750567,esv2750574,esv2750600,esv2750607,esv2750616,esv2750629,esv2750636,esv2750651,esv2750658,esv2750672,esv2750676,esv2750683,esv2750696,esv2750700,esv2750703,esv2750712,esv2750718,esv2750719,esv2750731,esv2750749,esv2750759,esv2750776,esv2750631 M 51 45 0 "" 21603,21606,21616,21618,21634,21693,21721,21772,21791,21802,21805,21808,21817,21837,21841,21863,21872,21879,21909,21911,21932,21938,21939,21944,21972,22007,22011,22075,22085,22127,22128,22170,22217,22231,22233,22259,22261,22275,22278,22286,22298,22335,22352,22371,22394 esv33549 13 20392802 20392905 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv94058 S 51 0 1 "" 21802 nsv9057 13 20415724 20419962 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21377 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18563 nsv515960 13 20432199 20432752 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv681852,nssv691059,nssv661294,nssv672045,nssv663466,nssv680626,nssv662313,nssv680340,nssv679711,nssv678065,nssv665475 M 2026 0 11 "" nsv9059 13 20435513 20468871 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26416,nssv24552 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA18860,NA19221 nsv64790 13 20479744 20479810 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv83368 M 24 "" nsv455835 13 20548501 20585567 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533305 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00005 esv32897 13 20626349 20627811 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101600,essv101124,essv93833,essv94451,essv95331,essv97326,essv95834,essv99016,essv92907,essv96144,essv93508,essv92606,essv96514,essv97724,essv100248,essv100535 M 51 0 16 "" 21603,21618,21634,21808,21872,21879,21911,21938,21939,22007,22128,22233,22261,22278,22286,22298 esv33455 13 20640486 20640645 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv96977 S 51 0 1 "" 21817 nsv64608 13 20640541 20644479 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv83186 M 24 "" esv34670 13 20708219 20796168 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6978762,essv6986698 M 771 1 0 "" NA12236 dgv546e1 13 20717264 20796168 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv19722,esv1083 M 271 0 0 "" NA12236 nsv818948 13 20725506 20791151 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415593 S 112 1 0 "" NA12236 nsv9060 13 20791561 20799550 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20673,nssv20556 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA07048,NA10863 nsv519207 13 20811015 20816844 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696696 S 2026 1 0 "" nsv528507 13 20965681 20999691 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705114 S 2026 1 0 "" nsv832560 13 20975722 21164191 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450113,nssv1450111,nssv1450107,nssv1450108,nssv1450109,nssv1450110,nssv1450112 M 95 0 7 "" nsv952 13 20979263 21023652 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2024 S 9 0 1 "" NA18555 nsv953 13 21033977 21068454 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4060 S 9 1 0 "" NA12878 nsv525610 13 21071795 21081452 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701755 S 2026 0 1 "" nsv955 13 21075758 21120413 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9093 S 9 0 1 "" NA12156 nsv509497 13 21156261 21217971 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623642,nssv619627 M 4 2 0 "" NA10860,NA18994 nsv956 13 21206981 21241142 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9094 S 9 1 0 "" NA12156 nsv521733 13 21273922 21281253 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694494 S 2026 1 0 "" nsv521330 13 21275341 21281253 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697937 S 2026 0 1 "" nsv522035 13 21357507 21369401 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694805 S 2026 1 0 "" nsv957 13 21390437 21423831 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1138 S 9 1 0 "" NA19240 nsv832561 13 21452320 21561832 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450114 S 95 0 1 "" nsv518126 13 21453778 21457190 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695544 S 2026 0 1 "" nsv518947 13 21542217 21543461 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696414 S 2026 0 1 "" nsv518382 13 21542217 21544474 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695813 S 2026 0 1 "" esv2422437 13 21670723 22888451 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161249 S 181 1 0 "" ND04240 nsv522279 13 21746444 21858163 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695060 S 2026 0 1 "" dgv104n21 13 21766685 21771485 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv520677,nsv521430 M 2026 2 0 "" nsv522871 13 21767266 21780871 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698526 S 2026 0 1 "" nsv958 13 21798512 21835083 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2025 S 9 0 1 "" NA18555 nsv442303 13 21994827 22004855 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv455836 13 22033954 22172512 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533306 S 1557 0 1 "" 1780854123_A nsv525067 13 22119348 22122008 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701121 S 2026 0 1 "" nsv517917 13 22129920 22132909 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695329 S 2026 0 1 "" nsv959 13 22204300 22229742 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6549 S 9 0 1 "" NA12156 nsv832562 13 22221892 22351914 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450115 S 95 0 1 "" esv2422502 13 22227699 23854929 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161478 S 181 1 0 "" ND01934 esv2422445 13 22229982 22632940 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161299 S 181 1 0 "" ND04312 dgv74e55 13 22239615 22454615 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv2751134,esv2751133 M 771 2 0 "" BEC_544,BEC_709 nsv526435 13 22255136 22381716 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702738 S 2026 1 0 "" nsv818949 13 22300993 22310923 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416670,nssv1416669,nssv1418313 M 112 3 0 "" NA19093,NA19116,NA19120 nsv524128 13 22320522 22327357 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700006 S 2026 0 1 "" nsv518408 13 22320522 22381716 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695840 S 2026 0 1 "" nsv832563 13 22335637 22522444 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450116 S 95 1 0 "" nsv832564 13 22360492 22514069 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450118 S 95 0 1 "" nsv517940 13 22365854 22529340 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695352 S 2026 1 0 "" esv2751135 13 22404648 22673500 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6984247,essv6984251,essv6984250,essv6984249,essv6984248 M 771 1 0 "" BEC_681 nsv455837 13 22409581 23813551 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533307 S 1557 1 0 "" NINDS_72 nsv525965 13 22409581 23830645 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702179 S 2026 1 0 "" nsv455838 13 22426685 22762657 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533308 S 1557 1 0 "" NINDS_163 nsv960 13 22431215 22476097 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9095 S 9 0 1 "" NA12156 nsv524206 13 22437563 22464586 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700093 S 2026 0 1 "" nsv442304 13 22443593 22451522 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv818950 13 22443597 22451518 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417357,nssv1417422 M 112 0 2 "" NA18612,NA18952 esv2751136 13 22454400 23865515 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6981474,essv6981476,essv6981473,essv6981477,essv6987965,essv6987964,essv6981475,essv6989242 M 771 0 1 "" BEC_24 nsv521331 13 22466143 22471475 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697938 S 2026 0 1 "" nsv509498 13 22469794 22536258 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623643,nssv623644,nssv620985 M 4 2 0 "" NA15510,NA18994 nsv510576 13 22503236 22536258 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618898 S 4 0 1 "" NA10860 dgv44n17 13 22523664 22536210 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437162,nsv437161 M 60 0 2 "" NA06991,NA07029 nsv961 13 22527013 22536224 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4061 S 9 0 1 "" NA12878 dgv105n21 13 22593531 22595841 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv521760,nsv523714 M 2026 2 0 "" nsv520725 13 22629386 22815281 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697577 S 2026 0 1 "" nsv517054 13 22659882 22664935 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv658620,nssv653698,nssv666817,nssv689036 M 2026 0 4 "" nsv521020 13 22841526 22866485 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697739 S 2026 1 0 "" nsv521022 13 22868859 22922344 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697740 S 2026 0 1 "" nsv455840 13 22894197 22925634 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533309 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00670 nsv832565 13 22934554 23112858 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450119 S 95 1 0 "" nsv64693 13 22955657 22955988 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv83271 M 24 "" nsv962 13 23114191 23160175 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6551 S 9 0 1 "" NA12156 nsv521023 13 23153384 23167820 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694413 S 2026 1 0 "" nsv832566 13 23321564 23483633 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450120 S 95 1 0 "" nsv518839 13 23381053 23413162 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696292 S 2026 0 1 "" nsv523820 13 23386126 23388921 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699651 S 2026 0 1 "" nsv518890 13 23419485 23427566 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696348 S 2026 0 1 "" nsv516361 13 23555042 23557212 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv691642,nssv658427,nssv674301,nssv667769 M 2026 0 4 "" esv2422202 13 23595584 23788928 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161486 S 181 1 0 "" ND04312 nsv509499 13 23599947 23640950 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623645 S 4 1 0 "" NA18994 nsv507686 13 23602794 23608794 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620526,nssv617851 M 4 2 0 "" CHM,NA15510 esv2751137 13 23625026 23854056 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6984255,essv6984254,essv6984253,essv6984252,essv6988776 M 771 1 0 "" BEC_681 nsv455842 13 23746395 23813551 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533311 S 1557 1 0 "" NINDS_163 nsv832567 13 23775119 23992871 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450121,nssv1450122 M 95 0 2 "" nsv521634 13 23802315 23860983 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694468 S 2026 0 1 "" esv2751138 13 23829981 23906630 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6983117,essv6983118 M 771 1 0 "" BEC_544 nsv520280 13 23858000 23860983 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697323 S 2026 0 1 "" dgv547e1 13 23927295 23948923 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv23712,esv1192 M 271 0 0 "" NA12740 nsv64523 13 23927645 23927645 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv83101 M 24 "" nsv832568 13 23994523 24215466 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450123 S 95 1 0 "" esv2751139 13 24001620 24124107 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6983702,essv6983701,essv6983700,essv6983699 M 771 1 0 "" BEC_614 nsv963 13 24057098 24111621 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9847,nssv9290 M 9 0 2 "" NA18507,NA18517 nsv433523 13 24069524 24080467 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463404 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA18517 nsv455843 13 24078151 24235300 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533312 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01361 esv2751140 13 24083375 24189900 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6983070,essv6983069,essv6986345 M 771 1 0 "" BEC_539 esv32530 13 24085829 24098727 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98830,essv98587,essv99765,essv99476 M 51 2 2 "" 21606,22085,22086,22335 dgv222n27 13 24098597 24147088 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv455844,nsv455845 M 1557 2 0 "" HGDP00900,NINDS_231 esv2751141 13 24107589 24139746 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6983923,essv6987445 M 771 1 0 "" BEC_734 nsv525938 13 24129635 24139241 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702144 S 2026 0 1 "" nsv527317 13 24130217 24130548 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703742 S 2026 0 1 "" esv32615 13 24132159 24132608 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100708 S 51 0 1 "" 21656 nsv528064 13 24162037 24167407 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704600 S 2026 0 1 "" esv33422 13 24270935 24271100 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv95303,essv94595,essv92947,essv92698,essv97994,essv99352,essv97736,essv100404,essv98341 M 51 0 9 "" 21872,21932,21939,21944,22259,22275,22278,22300,22352 nsv442664 13 24407846 24413343 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv964 13 24420209 24464918 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5467 S 9 0 1 "" NA19129 dgv106n21 13 24466016 24477336 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv515904,nsv521289 M 2026 0 16 "" nsv818951 13 24469233 24477336 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416674 S 112 0 1 "" NA19116 dgv7e24 13 24567208 24568491 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH esv2750715,esv2750478,esv2750555,esv2750579,esv2750630,esv2750637,esv2750650,esv2750656,esv2750770 M 51 0 9 "" 21656,21659,21932,22007,22217,22286,22300,22352,22394 dgv107n21 13 24577445 24579106 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv525056,nsv518769 M 2026 0 2 "" nsv818952 13 24577445 24579106 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418159,nssv1418148 M 112 0 2 "" NA06991,NA06993 nsv526439 13 24758273 24759577 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702742 S 2026 0 1 "" nsv510596 13 24815461 24848969 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622668 S 4 0 1 "" NA18994 nsv521237 13 24978666 24982161 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv689377,nssv687130 M 2026 0 2 "" nsv442665 13 25108823 25124911 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv521913 13 25124174 25129946 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694684 S 2026 0 1 "" nsv967 13 25275327 25311098 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9096,nssv9984,nssv4062 M 9 3 0 "" NA12156,NA12878,NA18956 nsv509500 13 25277900 25290717 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620986,nssv619628,nssv623646,nssv618101 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv832569 13 25367541 25592540 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450124 S 95 0 1 "" nsv517013 13 25505667 25514627 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv691372,nssv682798,nssv673583,nssv667142,nssv691803,nssv653616,nssv689331,nssv672305,nssv668539 M 2026 0 9 "" nsv818953 13 25544425 25553996 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417346 S 112 1 0 "" NA18609 nsv433524 13 25549661 25553654 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463405 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA18956 nsv968 13 25657858 25671385 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1139 S 9 1 0 "" NA19240 nsv64848 13 25721699 25721895 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv83426 M 24 "" dgv548e1 13 25898592 26065378 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv201,essv4825 M 271 0 0 "" NA18540 nsv9061 13 25940659 25945807 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26431 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19221 nsv9062 13 25946194 25951381 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19402,nssv20726,nssv21465,nssv26446,nssv21205,nssv21728,nssv23321,nssv21787,nssv22288,nssv24638,nssv18941,nssv20703,nssv19862,nssv20810,nssv21699,nssv21629,nssv24178,nssv23481,nssv19219,nssv20898,nssv24398,nssv20364,nssv19145,nssv24138,nssv24150 M 31 25 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10847,NA11830,NA12155,NA12740,NA12872,NA18502,NA18504,NA18517,NA18537,NA18564,NA18572,NA18853,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19144,NA19173,NA19221,NA19240 nsv969 13 26066675 26072204 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9848 S 9 1 0 "" NA18507 nsv970 13 26169342 26204533 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1140 S 9 1 0 "" NA19240 nsv455848 13 26204551 26221607 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533315 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00737 nsv455849 13 26206354 26261688 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533316 S 1557 0 1 "" 1780862415_A nsv507687 13 26225396 26231396 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620527 S 4 1 0 "" NA15510 nsv971 13 26226315 26272038 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6552 S 9 0 1 "" NA12156 nsv516802 13 26436496 26437964 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv663608,nssv671015 M 2026 2 0 "" nsv521278 13 26473037 26473287 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697882 S 2026 0 1 "" nsv525992 13 26486660 26487593 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702215 S 2026 0 1 "" nsv972 13 26513923 26544346 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2898,nssv4063 M 9 2 0 "" NA12878,NA18555 nsv523333 13 26655905 26713377 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699079 S 2026 0 1 "" nsv520824 13 26750569 26757861 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697634 S 2026 0 1 "" nsv64586 13 26759888 26760201 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv83164 M 24 "" nsv523599 13 27108301 27109580 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699391 S 2026 0 1 "" esv32691 13 27153524 27153670 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93114,essv98128,essv94277 M 51 3 0 "" 21863,22259,22394 nsv522030 13 27243952 27254322 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694799 S 2026 0 1 "" nsv528978 13 27410585 27412987 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705677 S 2026 1 0 "" nsv973 13 27540575 27572061 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10912 S 9 1 0 "" NA15510 nsv64687 13 27588116 27594207 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv83265 M 24 "" nsv525459 13 27692258 27771907 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701587 S 2026 0 1 "" nsv64676 13 27737857 27738181 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv83254 M 24 "" nsv455850 13 27889988 27949331 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533317 S 1557 0 1 "" 1780854101_A nsv64855 13 28059628 28059628 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv83433 M 24 "" nsv832571 13 28147931 28317562 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450125 S 95 0 1 "" nsv974 13 28181886 28214510 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9985 S 9 1 0 "" NA18956 nsv518610 13 28373872 28384244 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694253 S 2026 0 1 "" nsv975 13 28385107 28420092 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1141 S 9 1 0 "" NA19240 nsv520663 13 28413875 28455614 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694393 S 2026 1 0 "" nsv455851 13 28626058 28644494 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533318 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00433 nsv976 13 28657458 28702146 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9097 S 9 0 1 "" NA12156 nsv64203 13 28789563 28789873 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv82781 M 24 "" nsv978 13 28826908 28872458 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6553 S 9 0 1 "" NA12156 nsv64217 13 28852772 28853095 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv82795 M 24 "" nsv979 13 29020254 29065821 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6554 S 9 0 1 "" NA12156 nsv528336 13 29092288 29124498 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704918 S 2026 1 0 "" nsv980 13 29098197 29134915 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9098,nssv4064,nssv2026 M 9 0 3 "" NA12156,NA12878,NA18555 nsv510577 13 29111612 29152316 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620056,nssv618899,nssv617403 M 4 0 3 "" CHM,NA10860,NA15510 nsv510598 13 29374386 29440798 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620057 S 4 0 1 "" NA15510 nsv832572 13 29548005 29733256 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450127,nssv1450126 M 95 2 0 "" nsv981 13 29601159 29637838 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9099 S 9 0 1 "" NA12156 nsv528192 13 29698293 29703992 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704749 S 2026 0 1 "" nsv521987 13 29703815 29703992 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694754 S 2026 0 1 "" nsv455853 13 29809531 29849514 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533320 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01023 nsv982 13 29812394 29846351 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9100 S 9 1 0 "" NA12156 nsv525675 13 29845612 29846741 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701832 S 2026 0 1 "" nsv832573 13 29951709 30126905 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450129 S 95 1 0 "" nsv983 13 30064114 30075460 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9102 S 9 0 1 "" NA12156 nsv832574 13 30129333 30294545 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450130 S 95 1 0 "" nsv984 13 30219604 30249667 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9953 S 9 1 0 "" NA18507 nsv985 13 30255225 30293764 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1142,nssv9103 M 9 2 0 "" NA12156,NA19240 nsv9063 13 30413462 30426982 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26460 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19221 dgv549e1 13 30423174 30476563 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1547,esv957 M 271 0 0 "" NA19012 esv2751142 13 30624178 30804141 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6984238,essv6984237,essv6987538 M 771 1 0 "" BEC_817 nsv528568 13 30624653 30769663 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705187 S 2026 1 0 "" nsv64080 13 30780509 30790029 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv82658 M 24 "" nsv832575 13 30881769 31046428 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450131 S 95 0 1 "" nsv986 13 30997594 31029718 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9104 S 9 0 1 "" NA12156 nsv987 13 31019998 31053679 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2899 S 9 1 0 "" NA18555 nsv989 13 31279210 31319797 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5469 S 9 0 1 "" NA19129 nsv990 13 31414007 31447069 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2027,nssv9986 M 9 0 2 "" NA18555,NA18956 nsv64730 13 31425584 31426794 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv83308 M 24 "" nsv517120 13 31426958 31433996 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv662451,nssv671702,nssv667650,nssv658763,nssv675926,nssv691103,nssv673783,nssv669147,nssv665744,nssv691712,nssv652710,nssv678141,nssv655131,nssv665533,nssv675404,nssv680666,nssv655900,nssv675500,nssv684967,nssv689603,nssv685756,nssv675052,nssv686549,nssv666447,nssv688418,nssv682651,nssv657272,nssv653019,nssv663467,nssv667211,nssv689171,nssv682838,nssv656670,nssv656967,nssv691622,nssv681524,nssv658873,nssv662137,nssv684592,nssv652527,nssv669497,nssv673334,nssv665116,nssv691766,nssv683881,nssv658010,nssv688220,nssv677358,nssv670732,nssv653816,nssv684395,nssv679582 M 2026 0 52 "" dgv45n17 13 31426958 31438047 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437782,nsv437783 M 60 0 2 "" NA18515,NA18914 nsv9064 13 31430130 31437931 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21495,nssv24664,nssv23509,nssv24424,nssv18640,nssv26474,nssv21659,nssv24176,nssv24164,nssv20840 M 31 0 10 Samples from several populations that are part of the HapMap project. "" NA12802,NA18502,NA18537,NA18853,NA18860,NA18972,NA19132,NA19173,NA19221,NA19240 nsv442666 13 31430622 31436423 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" esv33375 13 31430839 31436343 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93816,essv94422,essv93080,essv94604,essv96070,essv99706,essv94981,essv99150 M 51 0 8 "" 21634,21808,21863,21932,22127,22217,22231,22275 nsv526230 13 31431830 31440703 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702496 S 2026 0 1 "" nsv526461 13 31431830 31452459 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702764 S 2026 0 1 "" nsv818954 13 31504069 31519178 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418502 S 112 0 1 "" NA19193 nsv519928 13 31570463 31571837 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv684017,nssv660586,nssv682516,nssv685808,nssv690391,nssv660535,nssv659522,nssv693095 M 2026 0 8 "" nsv832576 13 31795131 31974988 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450132 S 95 1 0 "" nsv507688 13 32078525 32084525 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620528,nssv617852 M 4 2 0 "" CHM,NA15510 nsv832577 13 32165473 32336261 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450133 S 95 1 0 "" nsv528562 13 32450682 32451549 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705178 S 2026 1 0 "" nsv526667 13 32597982 32604179 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702997 S 2026 0 1 "" nsv63989 13 32635764 32635860 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv82567 M 24 "" nsv991 13 32689518 32734704 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9105 S 9 0 1 "" NA12156 nsv519343 13 32753398 32756313 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696802 S 2026 0 1 "" nsv992 13 32825625 32853201 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9106 S 9 1 0 "" NA12156 nsv510328 13 32842217 32848217 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618383 S 4 0 1 "" CHM nsv993 13 32859839 32904696 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9107 S 9 0 1 "" NA12156 nsv832578 13 32981659 33186613 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450134 S 95 1 0 "" nsv994 13 32995401 33041058 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9291 S 9 0 1 "" NA18517 nsv9065 13 33000262 33043918 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20928,nssv23349,nssv24204,nssv23537,nssv21467,nssv18971,nssv24690,nssv24202,nssv21788,nssv21525,nssv20763,nssv19175,nssv21235,nssv21689,nssv20586,nssv21004,nssv21817,nssv22318,nssv24190,nssv24450,nssv19249,nssv19892,nssv20394,nssv18670 M 31 24 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10847,NA10863,NA11830,NA12155,NA12802,NA12872,NA18502,NA18504,NA18517,NA18537,NA18563,NA18564,NA18572,NA18860,NA18972,NA18975,NA18980,NA19132,NA19144,NA19173,NA19240 nsv437163 13 33032809 33046353 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467044 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA10857 esv32975 13 33033770 33042587 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98808,essv95085,essv98218,essv94692,essv101414,essv101656,essv94512,essv92874,essv92765,essv96623,essv93288,essv92645,essv99223,essv100614,essv98515 M 51 0 15 "" 21606,21721,21772,21791,21805,21909,21932,21939,21944,22011,22170,22233,22275,22298,22352 nsv510578 13 33034220 33060131 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622669 S 4 0 1 "" NA18994 nsv438249 13 33039635 33041447 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470593,nssv470592 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA10857,NA12043 nsv521954 13 33195679 33197233 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694723 S 2026 0 1 "" nsv995 13 33345580 33350195 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6555 S 9 1 0 "" NA12156 nsv996 13 33359981 33391858 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9987 S 9 1 0 "" NA18956 nsv527943 13 33396922 33404746 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704451 S 2026 0 1 "" nsv528193 13 33407474 33435384 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704750 S 2026 0 1 "" esv33813 13 33464480 33464848 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98640 S 51 0 1 "" 22085 esv33137 13 33470977 33475565 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100746 S 51 1 0 "" 21656 dgv550e1 13 33768946 33934202 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv22556,essv870,essv15036,essv19981,essv20959,esv34,essv16238,essv19562,essv20574 M 271 0 0 "" NA07056,NA07348,NA12801,NA12813,NA12864,NA19000,NA19129,NA19161 nsv507689 13 33791556 33797556 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619097 S 4 1 0 "" NA10860 nsv997 13 33828527 33861308 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2028 S 9 1 0 "" NA18555 nsv9066 13 33852033 33853639 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19001,nssv18700,nssv20870 M 31 0 3 Samples from several populations that are part of the HapMap project. "" NA12802,NA12872,NA18853 nsv9067 13 33862283 33865518 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21555,nssv24476,nssv21497,nssv20958 M 31 4 0 Samples from several populations that are part of the HapMap project. "" NA18537,NA18563,NA18564,NA18972 esv33828 13 33906076 33910184 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99225 S 51 1 0 "" 22275 nsv526502 13 33985891 34376341 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702812 S 2026 1 0 "" nsv524898 13 34107520 34117778 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700907 S 2026 0 1 "" nsv998 13 34112539 34157748 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9108 S 9 0 1 "" NA12156 nsv64868 13 34119473 34126649 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv83446 M 24 "" nsv1000 13 34168049 34172162 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9109 S 9 1 0 "" NA12156 nsv518621 13 34349150 34371956 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694254 S 2026 0 1 "" nsv64616 13 34358003 34358209 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv83194 M 24 "" nsv1001 13 34389350 34420814 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5470 S 9 1 0 "" NA19129 nsv510600 13 34452619 34459989 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617404 S 4 0 1 "" CHM nsv64727 13 34482732 34482894 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv83305 M 24 "" esv33135 13 34588252 34598671 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv94045,essv95732,essv98936,essv95980,essv93522,essv99734,essv100471,essv98445 M 51 0 8 "" 21802,21841,21938,22127,22128,22217,22298,22352 esv33929 13 34609906 34609947 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100024 S 51 0 1 "" 22086 nsv1002 13 34669914 34714812 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9110 S 9 0 1 "" NA12156 nsv832579 13 34965270 35144572 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450135 S 95 0 1 "" nsv510329 13 34984903 34990903 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621393,nssv618384,nssv622225 M 4 0 3 "" CHM,NA10860,NA15510 nsv832580 13 35099247 35265714 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450136 S 95 0 1 "" nsv507690 13 35191337 35197337 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620530,nssv617853,nssv619098 M 4 3 0 "" CHM,NA10860,NA15510 nsv64246 13 35336405 35336722 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv82824 M 24 "" nsv524786 13 35359168 35359822 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700778 S 2026 0 1 "" nsv510948 13 35408921 35431356 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622398 S 4 0 0 "" NA10860 nsv509501 13 35426107 35431356 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620987 S 4 1 0 "" NA15510 nsv518674 13 35535010 35536466 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696124 S 2026 0 1 "" nsv522911 13 35535455 35536466 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698570 S 2026 0 1 "" nsv525432 13 35736074 35762549 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701559 S 2026 0 1 "" nsv515635 13 35746187 35762549 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv692166,nssv691605,nssv685809,nssv655988,nssv679139,nssv701419,nssv665245,nssv664181,nssv691437,nssv655359,nssv661998 M 2026 6 5 "" nsv1003 13 35884821 35895614 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4065 S 9 1 0 "" NA12878 nsv1004 13 36007958 36039798 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9988 S 9 1 0 "" NA18956 nsv524665 13 36158707 36164928 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700634 S 2026 0 1 "" nsv1005 13 36201443 36246237 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9113 S 9 0 1 "" NA12156 nsv522336 13 36203641 36482838 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695116 S 2026 1 0 "" essv24624 13 36209331 36249756 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA10846 dgv551e1 13 36209331 36273415 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv20861,esv1288 M 271 0 0 "" NA12145 nsv64081 13 36336257 36336322 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv82659 M 24 "" nsv1006 13 36342954 36368226 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2029,nssv5471 M 9 2 0 "" NA18555,NA19129 nsv510330 13 36690717 36696717 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624136 S 4 0 1 "" NA18994 nsv1007 13 36744532 36778831 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2900 S 9 1 0 "" NA18555 nsv64437 13 36778569 36778662 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv83015 M 24 "" nsv832582 13 36841056 37022252 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450137 S 95 1 0 "" nsv832583 13 36928752 37100000 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450140,nssv1450138 M 95 0 2 "" dgv108n21 13 36938267 36943165 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv521650,nsv519270 M 2026 0 3 "" nsv510595 13 36942468 36976364 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622399 S 4 0 0 "" NA10860 nsv517476 13 36963446 37019560 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv661873,nssv659190,nssv662314,nssv653093,nssv665220,nssv678142,nssv679853,nssv675882,nssv677270,nssv679110,nssv685038,nssv682396,nssv652167,nssv665167,nssv688904,nssv670369,nssv678787,nssv662138,nssv689198,nssv652195,nssv688169,nssv686487,nssv678184,nssv667143,nssv687720,nssv681370,nssv667061,nssv653356,nssv676047,nssv663336,nssv682485,nssv659219,nssv662999,nssv680079,nssv652134,nssv667973 M 2026 0 36 "" esv33144 13 36967723 36983277 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93919,essv96817,essv101038,essv95052,essv101420,essv96919,essv95492,essv95373,essv97294,essv99026,essv96227,essv99929,essv93362,essv99693,essv98036,essv96432,essv99149,essv98476,essv94292 M 51 17 2 "" 21634,21659,21693,21721,21805,21817,21847,21872,21879,21938,22007,22086,22170,22217,22259,22261,22275,22352,22394 dgv552e1 13 36968044 37011260 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv911,essv9951 M 271 0 0 "" NA19204 dgv223n27 13 36968549 37017096 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv455857,nsv455856 M 1557 0 2 "" HGDP00912,HGDP00932 nsv9068 13 36969416 36984045 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21847,nssv19462,nssv20793,nssv21729,nssv21585,nssv20896,nssv21265,nssv19031,nssv21034,nssv19205 M 31 0 10 Samples from several populations that are part of the HapMap project. "" NA07048,NA10839,NA10847,NA11830,NA12740,NA12872,NA18537,NA18552,NA18942,NA18980 nsv442667 13 36970036 36982757 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv455859 13 36991541 37017096 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533323 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01286 dgv224n27 13 37000166 37017096 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv455860,nsv455861 M 1557 0 2 "" HGDP00691,HGDP01201 nsv818956 13 37029993 37051351 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417922 S 112 1 0 "" NA18852 nsv64072 13 37124806 37124806 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv82650 M 24 "" nsv64068 13 37124866 37124866 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv82646 M 24 "" esv33246 13 37251893 37255951 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100741,essv99740 M 51 2 0 "" 21656,22217 nsv64102 13 37357897 37357897 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv82680 M 24 "" nsv64613 13 37524207 37524266 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv83191 M 24 "" nsv518259 13 37546788 37559893 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695690 S 2026 0 1 "" nsv507691 13 37706331 37712331 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623131,nssv619099,nssv617854,nssv620531 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv64083 13 37955316 37958201 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv82661 M 24 "" esv33142 13 37955504 37958191 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98891,essv100761,essv95202,essv98271,essv94843,essv101278,essv96975,essv93026,essv97405,essv101657,essv98975,essv92980,essv92682,essv93686,essv100000,essv95966,essv93367,essv99606,essv97973,essv96543,essv100232,essv100541,essv98453,essv94213 M 51 4 20 "" 21606,21656,21721,21772,21791,21805,21817,21863,21879,21909,21938,21939,21944,21972,22086,22127,22170,22217,22259,22261,22286,22298,22352,22394 nsv832584 13 37972265 38182724 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450141 S 95 1 0 "" nsv832585 13 38131307 38322375 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450142 S 95 1 0 "" nsv64239 13 38174701 38174758 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv82817 M 24 "" nsv507692 13 38233827 38239827 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619100 S 4 1 0 "" NA10860 nsv1008 13 38356830 38366613 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9114 S 9 0 1 "" NA12156 nsv1009 13 38364116 38398627 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4066 S 9 1 0 "" NA12878 nsv520639 13 38423264 38427226 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697532 S 2026 0 1 "" nsv509503 13 38423550 38442130 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623647 S 4 1 0 "" NA18994 nsv442668 13 38645763 38649136 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv437164 13 38765227 38770237 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467045 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA12802 nsv438250 13 38766773 38768592 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470595,nssv470594 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA12802,NA12815 nsv64628 13 38832219 38833515 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv83206 M 24 "" nsv64358 13 38841738 38841738 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv82936 M 24 "" nsv507693 13 38892163 38898163 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620532,nssv617855,nssv619101,nssv623132 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv1011 13 38906962 38932177 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9115 S 9 0 1 "" NA12156 nsv64485 13 38926482 38926803 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv83063 M 24 "" dgv553e1 13 38938036 38988742 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv945,essv206,essv2728 M 271 0 0 "" NA18965,NA18994 nsv818957 13 38961104 38965857 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417493 S 112 0 1 "" NA18965 nsv517093 13 39017410 39021073 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv682091,nssv664332,nssv676048,nssv653999,nssv653774,nssv692533,nssv686638,nssv655145,nssv670468,nssv677359,nssv691844,nssv679275 M 2026 0 12 "" nsv523936 13 39017410 39026845 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699782 S 2026 0 1 "" nsv832586 13 39120880 39277063 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450143,nssv1450145,nssv1450144 M 95 1 2 "" nsv523666 13 39127891 39128294 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699468 S 2026 0 1 "" esv33028 13 39136180 39137010 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98158,essv98343 M 51 2 0 "" 21772,22352 nsv1012 13 39180226 39214040 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9116 S 9 1 0 "" NA12156 nsv510331 13 39318552 39324552 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621394 S 4 0 1 "" NA15510 nsv516486 13 39604991 39618994 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv680697,nssv692933,nssv669010,nssv704487,nssv668663,nssv687396,nssv682652,nssv682699,nssv681825,nssv705928 M 2026 0 10 "" nsv527497 13 39622077 39623689 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703946 S 2026 0 1 "" nsv523657 13 39626494 39626828 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699458 S 2026 1 0 "" nsv510332 13 39761651 39767651 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618385,nssv621395,nssv624137 M 4 0 3 "" CHM,NA15510,NA18994 nsv527921 13 39796405 39812540 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704428 S 2026 1 0 "" nsv1013 13 39873457 39906652 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2030 S 9 1 0 "" NA18555 nsv524578 13 39941438 39941558 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700534 S 2026 0 1 "" nsv525547 13 40022652 40035804 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701685 S 2026 0 1 "" nsv516843 13 40167994 40168080 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv682081,nssv654385 M 2026 2 0 "" nsv64500 13 40475534 40475671 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv83078 M 24 "" nsv832587 13 40502931 40696808 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450173,nssv1450190,nssv1450168,nssv1450151,nssv1450185,nssv1450191,nssv1450182,nssv1450188,nssv1450189,nssv1450187,nssv1450171,nssv1450186,nssv1450176,nssv1450192,nssv1450194,nssv1450199,nssv1450193,nssv1450198,nssv1450147,nssv1450148,nssv1450146,nssv1450149,nssv1450197,nssv1450174,nssv1450175,nssv1450181,nssv1450155,nssv1450167,nssv1450196,nssv1450152,nssv1450153,nssv1450154,nssv1450177,nssv1450170,nssv1450178,nssv1450156,nssv1450158,nssv1450157,nssv1450159,nssv1450166,nssv1450180,nssv1450160,nssv1450165,nssv1450179,nssv1450162,nssv1450169,nssv1450164,nssv1450163 M 95 48 0 "" nsv528180 13 40613282 40658947 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704730 S 2026 1 0 "" nsv523358 13 40616827 40658947 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699107 S 2026 0 1 "" nsv1014 13 40669113 40701719 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2901 S 9 1 0 "" NA18555 nsv1015 13 40723960 40756487 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5472 S 9 1 0 "" NA19129 nsv509504 13 40885977 40968900 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620988 S 4 1 0 "" NA15510 nsv455865 13 40995044 41423876 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533327 S 1557 1 0 "" 1780862585_A nsv516192 13 41002828 41003710 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv666692,nssv679140,nssv676635 M 2026 0 3 "" nsv818958 13 41002828 41003710 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417244 S 112 0 1 "" NA18577 nsv522257 13 41015928 41034100 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695037 S 2026 0 1 "" nsv528324 13 41186173 41193142 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704905 S 2026 0 1 "" dgv75e55 13 41291824 41480595 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv2751143,esv2751144 M 771 0 2 "" BEC_549,BEC_699 nsv832588 13 41349120 41525252 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450200,nssv1450201 M 95 2 0 "" nsv1016 13 41513997 41544425 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10913 S 9 1 0 "" NA15510 nsv832589 13 41534681 41675633 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450202 S 95 0 1 "" nsv510333 13 41563816 41569816 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621396 S 4 0 1 "" NA15510 nsv455866 13 41587853 41612711 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533328 S 1557 0 1 "" 1780862381_A dgv554e1 13 41649707 41674117 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv5756,esv896 M 271 0 0 "" NA18540 nsv832590 13 41655648 41810459 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450203 S 95 1 0 "" nsv519614 13 41657253 41660048 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv657069,nssv657181 M 2026 0 2 "" nsv523454 13 41657253 41665185 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699211 S 2026 0 1 "" nsv9070 13 41659324 41662377 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24230 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18517 nsv455867 13 41692508 41710356 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533329 S 1557 0 1 "" 1780862162_A nsv832591 13 41735587 41916301 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450204 S 95 1 0 "" nsv1017 13 41881355 41911888 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2031 S 9 1 0 "" NA18555 esv33319 13 42042604 42044458 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99975 S 51 0 1 "" 22086 nsv832593 13 42043940 42207787 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450205 S 95 1 0 "" dgv555e1 13 42098764 42130996 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv15922,esv1142,essv7966,essv13367 M 271 0 0 "" NA19159,NA19203,NA19205 nsv442306 13 42103086 42123720 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv522484 13 42103269 42126324 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705851 S 2026 0 1 "" nsv818959 13 42103269 42127438 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416790 S 112 0 1 "" NA19159 nsv437784 13 42115101 42122740 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467665 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19205 nsv1018 13 42170331 42194527 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9488 S 9 1 0 "" NA18507 nsv455869 13 42258598 42356559 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533330 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01374 esv33538 13 42280242 42771921 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv94767 S 51 1 0 "" 21791 nsv455870 13 42314658 42394235 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533331 S 1557 1 0 "" 1780862532_A dgv225n27 13 42369403 42422816 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv455871,nsv455872 M 1557 2 0 "" 1780846320_A,HGDP01229 nsv527959 13 42373191 42419227 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704469 S 2026 1 0 "" nsv455873 13 42457768 42501871 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533334 S 1557 0 1 "" 1780854103_A nsv519830 13 42495865 42496191 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv658969,nssv672981,nssv676682 M 2026 0 3 "" nsv525534 13 42495865 42527595 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701669 S 2026 1 0 "" nsv442669 13 42497548 42501093 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv109n21 13 42501093 42502158 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv525393,nsv529029 M 2026 2 0 "" nsv524787 13 42501093 42505143 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700779 S 2026 1 0 "" nsv818960 13 42501093 42505143 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417657,nssv1417109 M 112 2 0 "" NA18529,NA18992 esv2751145 13 42552658 42722441 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6987613,essv6987612,essv6984532,essv6984531,essv6984530 M 771 1 0 "" BEC_715 nsv832594 13 42607309 42789531 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450210,nssv1450207,nssv1450208,nssv1450209 M 95 3 1 "" nsv516197 13 42630555 42686158 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv688831,nssv671908,nssv666732,nssv687241 M 2026 4 0 "" esv2751146 13 42640864 42688913 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6981115,essv6985481,essv6981117,essv6981116 M 771 1 0 "" BEC_354 nsv518904 13 42726170 42782680 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696362 S 2026 1 0 "" nsv526810 13 42782680 42789149 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703164 S 2026 0 1 "" nsv516714 13 42922157 42926789 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv670342,nssv684434,nssv655963,nssv692728,nssv685435,nssv692646,nssv674335,nssv690562,nssv679613 M 2026 0 9 "" nsv1019 13 42936104 42969886 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4067 S 9 1 0 "" NA12878 nsv528539 13 43060114 43060400 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705151 S 2026 0 1 "" nsv832595 13 43188973 43397299 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450214,nssv1450212,nssv1450215,nssv1450211,nssv1450213,nssv1450219,nssv1450218,nssv1450216 M 95 8 0 "" nsv524104 13 43361409 43369277 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699979 S 2026 0 1 "" nsv1020 13 43750823 43783826 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2032 S 9 1 0 "" NA18555 nsv1022 13 43759994 43800747 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9117 S 9 0 1 "" NA12156 nsv516216 13 44204329 44207025 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv666870,nssv659414 M 2026 0 2 "" nsv507694 13 44217618 44223618 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623133,nssv617856 M 4 2 0 "" CHM,NA18994 nsv524788 13 44390146 44438136 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700780 S 2026 0 1 "" nsv64787 13 44491224 44491224 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv83365 M 24 "" nsv832596 13 44512373 44696897 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450220,nssv1450221 M 95 0 2 "" nsv518593 13 44708063 44724876 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696040 S 2026 0 1 "" nsv510579 13 44777361 44897073 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620058 S 4 0 1 "" NA15510 nsv1023 13 44840921 44863946 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1143,nssv9489 M 9 2 0 "" NA18507,NA19240 nsv455875 13 44887456 44951545 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533335 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00682 nsv510583 13 44956592 45058537 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620059 S 4 0 1 "" NA15510 nsv64403 13 45214564 45219771 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv82981 M 24 "" nsv1024 13 45264845 45309417 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2033 S 9 0 1 "" NA18555 nsv527222 13 45265380 45282832 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703622 S 2026 1 0 "" nsv832597 13 45284263 45453184 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450222,nssv1450224,nssv1450223 M 95 0 3 "" nsv526023 13 45380120 45387745 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702253 S 2026 0 1 "" nsv832598 13 45446364 45621183 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450225,nssv1450226 M 95 2 0 "" nsv455876 13 45516291 46211420 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533336 S 1557 1 0 "" 1780854101_A nsv526925 13 45650672 45652735 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703289 S 2026 0 1 "" nsv64655 13 45804889 45805037 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv83233 M 24 "" nsv1025 13 45918884 45946900 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9990 S 9 0 1 "" NA18956 nsv510584 13 45925862 45945287 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617405 S 4 0 1 "" CHM nsv1026 13 46033625 46067367 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4068 S 9 1 0 "" NA12878 nsv1027 13 46274592 46307559 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6556 S 9 1 0 "" NA12156 nsv510334 13 46363576 46369576 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621397,nssv624138 M 4 0 2 "" NA15510,NA18994 nsv525794 13 46541160 46565284 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701975 S 2026 1 0 "" nsv519317 13 46555923 46565284 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv655360,nssv697341,nssv698775,nssv685725 M 2026 3 1 "" nsv455877 13 46599641 46626088 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533337 S 1557 0 1 "" 1780862015_A nsv832599 13 46601076 46771856 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450227 S 95 1 0 "" nsv1028 13 46643294 46658919 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6557 S 9 0 1 "" NA12156 nsv455878 13 46720977 46740681 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533338 S 1557 0 1 "" 1780854257_A nsv527824 13 46737421 46739001 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704320 S 2026 0 1 "" nsv455879 13 46817612 47088107 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533339 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00791 nsv455880 13 46831126 46876253 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533340 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00682 nsv64224 13 46913696 46913799 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv82802 M 24 "" nsv528605 13 46915771 46919997 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705231 S 2026 0 1 "" nsv528243 13 47060559 47132113 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704805 S 2026 0 1 "" nsv832600 13 47081119 47239418 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450229 S 95 1 0 "" nsv7241 13 47089925 47122249 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6558 S 9 0 0 "" NA12156 nsv437785 13 47227585 47231992 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467666 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18503 nsv438251 13 47227772 47228419 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470597,nssv470598 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA18503,NA18504 nsv507695 13 47295378 47301378 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617857 S 4 1 0 "" CHM nsv1029 13 47437966 47443742 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9119 S 9 1 0 "" NA12156 nsv832601 13 47467953 47633940 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450231,nssv1450230,nssv1450232 M 95 3 0 "" nsv1030 13 47568830 47581048 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2902 S 9 1 0 "" NA18555 nsv1031 13 47664511 47688173 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5473 S 9 0 1 "" NA19129 nsv832602 13 47901160 48065782 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450233 S 95 0 1 "" nsv832604 13 47959082 48179808 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450234 S 95 0 1 "" nsv455881 13 48032413 48067571 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533341 S 1557 0 1 "" NINDS_163 nsv832605 13 48069306 48242971 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450236,nssv1450235 M 95 2 0 "" nsv525996 13 48108803 48120179 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702221 S 2026 0 1 "" nsv1033 13 48139447 48148565 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4630 S 9 0 1 "" NA19129 dgv556e1 13 48181984 48370518 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv23677,esv32 M 271 0 0 "" NA10863 nsv64742 13 48203734 48203797 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv83320 M 24 "" nsv64481 13 48203800 48203863 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv83059 M 24 "" nsv64104 13 48207953 48208061 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv82682 M 24 "" nsv64438 13 48208066 48208174 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv83016 M 24 "" nsv832606 13 48250213 48404010 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450237 S 95 1 0 "" nsv433525 13 48360955 48362222 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463406 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA18956 nsv1034 13 48424762 48470728 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2034,nssv9120 M 9 0 2 "" NA12156,NA18555 nsv455882 13 48429552 48577158 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533342 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00682 nsv1035 13 48554226 48598372 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9121 S 9 0 1 "" NA12156 nsv1036 13 48636706 48671760 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4069 S 9 1 0 "" NA12878 nsv832607 13 48654459 48818895 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450238 S 95 0 1 "" nsv64013 13 48741429 48741494 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv82591 M 24 "" nsv507696 13 48767799 48773799 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623134,nssv617858,nssv619102,nssv620534 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv1037 13 48817579 48824726 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9122 S 9 0 1 "" NA12156 nsv64662 13 48849416 48851876 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv83240 M 24 "" nsv523648 13 48903445 48984267 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699449 S 2026 1 0 "" nsv519181 13 48992091 48996377 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696665 S 2026 0 1 "" nsv525151 13 49004562 49005290 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701223 S 2026 1 0 "" nsv455883 13 49022622 49083205 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533343 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00873 nsv510335 13 49215270 49221270 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621398 S 4 0 1 "" NA15510 nsv1038 13 49222774 49257991 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9123 S 9 0 1 "" NA12156 nsv64311 13 49271980 49272168 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv82889 M 24 "" nsv1039 13 49427688 49453027 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1144,nssv2035 M 9 2 0 "" NA18555,NA19240 nsv517142 13 49433864 49443358 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv653855,nssv681712,nssv692423 M 2026 0 3 "" nsv64412 13 49507219 49507294 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv82990 M 24 "" nsv832608 13 49576629 49786414 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450240 S 95 1 0 "" nsv832609 13 49844578 49963969 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450241,nssv1450242 M 95 0 2 "" nsv1040 13 49939592 49988904 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9490,nssv1145,nssv6559,nssv2036,nssv4070,nssv5474 M 9 0 6 "" NA12156,NA12878,NA18507,NA18555,NA19129,NA19240 nsv526482 13 49940259 49963837 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702791 S 2026 0 1 "" nsv510585 13 49955885 49981784 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618900,nssv622670,nssv620060,nssv617406 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 esv32798 13 49958817 49964037 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv94090,essv95281,essv99122,essv93645,essv93202,essv99624,essv99296,essv97745,essv96250 M 51 9 0 "" 21802,21872,21938,21972,22170,22217,22275,22278,22371 esv33542 13 49967473 49971761 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98761,essv97592,essv95082,essv94127,essv101291,essv95261,essv99010,essv93595,essv99841,essv93237,essv99672,essv92559,essv99291,essv97706,essv100402,essv96277 M 51 16 0 "" 21606,21616,21721,21802,21805,21872,21938,21972,22086,22170,22217,22233,22275,22278,22300,22371 esv32857 13 49974248 49981901 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98828 S 51 0 1 "" 21606 nsv526007 13 50004556 50004789 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702235 S 2026 0 1 "" nsv522672 13 50015563 50017738 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv706077 S 2026 1 0 "" nsv524139 13 50051476 50051733 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700017 S 2026 0 1 "" nsv510336 13 50058255 50064255 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622226,nssv624139,nssv618386 M 4 0 3 "" CHM,NA10860,NA18994 esv32589 13 50063509 50064871 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97254 S 51 0 1 "" 22075 nsv437786 13 50216576 50229551 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467667 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19161 nsv526999 13 50338934 50350752 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703374 S 2026 0 1 "" nsv516602 13 50343561 50344115 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv691013,nssv671289,nssv671223,nssv669498,nssv690440,nssv681501,nssv657578,nssv660620,nssv678185,nssv686443,nssv679192,nssv661320,nssv689017 M 2026 0 13 "" nsv832610 13 50534662 50720107 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450243 S 95 1 0 "" nsv518074 13 50583790 50588385 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695488 S 2026 0 1 "" nsv507697 13 50615583 50621583 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617859,nssv620535,nssv619103 M 4 3 0 "" CHM,NA10860,NA15510 nsv527820 13 50622665 50622788 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704315 S 2026 0 1 "" nsv523778 13 50653108 50666502 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699601 S 2026 1 0 "" nsv64581 13 50658757 50658872 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv83159 M 24 "" nsv832611 13 50664473 50836315 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450244 S 95 0 1 "" nsv1041 13 50797989 50824652 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9991,nssv9124 M 9 2 0 "" NA12156,NA18956 nsv832612 13 51074984 51260526 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450259,nssv1450255,nssv1450256,nssv1450257,nssv1450254,nssv1450248,nssv1450246,nssv1450245,nssv1450247,nssv1450252,nssv1450249,nssv1450253,nssv1450258,nssv1450251 M 95 14 0 "" nsv1042 13 51102446 51133647 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6560 S 9 1 0 "" NA12156 nsv64332 13 51246709 51248351 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv82910 M 24 "" nsv507698 13 51450513 51456513 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617860,nssv623135,nssv619104,nssv620536 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv7242 13 51748934 52042129 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9492,nssv5477,nssv2037,nssv9491,nssv6561 M 9 0 0 "" NA12156,NA18507,NA18555,NA19129 nsv442307 13 51756793 51788011 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv1044 13 51994699 52018069 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4071 S 9 1 0 "" NA12878 nsv442670 13 51995985 52003786 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv517434 13 52255924 52260696 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv688633,nssv652012,nssv670307 M 2026 0 3 "" nsv507699 13 52256077 52262077 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620537 S 4 1 0 "" NA15510 nsv523092 13 52317140 52327454 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698784 S 2026 0 1 "" nsv455889 13 52317140 52364128 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533346 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00682 nsv1045 13 52330332 52366806 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4072,nssv1146 M 9 2 0 "" NA12878,NA19240 nsv832613 13 52422320 52585189 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450260 S 95 1 0 "" nsv527779 13 53023625 53147154 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704270 S 2026 0 1 "" nsv455890 13 53082238 53113095 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533347 S 1557 0 1 "" 1780854061_A nsv1046 13 53089267 53099756 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4073 S 9 1 0 "" NA12878 nsv1047 13 53128841 53140365 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5478 S 9 0 1 "" NA19129 esv34743 13 53211730 53322594 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6979617,essv6979618 M 771 1 0 "" NA18582 dgv557e1 13 53231210 53319335 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1172,essv7449 M 271 0 0 "" NA18582 nsv519254 13 53312565 53340810 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696749 S 2026 0 1 "" nsv527523 13 53349651 53429288 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703977 S 2026 0 1 "" nsv818961 13 53379823 53390155 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415694 S 112 0 1 "" NA12248 nsv522802 13 53402572 53413421 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698447 S 2026 0 1 "" nsv1048 13 53483586 53528435 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9126 S 9 0 1 "" NA12156 nsv455891 13 53531374 53566513 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533348 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01306 nsv515622 13 53562410 53568235 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv664139,nssv660886,nssv677914,nssv688520 M 2026 0 4 "" nsv523121 13 53562410 53570836 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698821 S 2026 0 1 "" nsv526911 13 53568213 53570836 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703271 S 2026 0 1 "" nsv1049 13 53582355 53626982 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9127 S 9 0 1 "" NA12156 esv34795 13 53590000 53593929 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6979594,essv6979595 M 771 0 1 "" NA18577 dgv558e1 13 53590033 53609237 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1196,essv5951 M 271 0 0 "" NA18577 nsv9071 13 53595731 53599032 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24716,nssv21094 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA10839,NA18860 nsv518338 13 53686843 53710499 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695767 S 2026 0 1 "" nsv818962 13 53686843 53710499 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416390 S 112 0 1 "" NA18856 nsv64700 13 53791603 53791664 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv83278 M 24 "" nsv523882 13 53793700 53796202 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699724 S 2026 1 0 "" nsv522444 13 53866790 53868747 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705802 S 2026 0 1 "" nsv1050 13 54073270 54098094 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9493 S 9 1 0 "" NA18507 esv32904 13 54203892 54206490 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99900 S 51 0 1 "" 22086 nsv528493 13 54336906 54500403 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705098 S 2026 0 1 "" nsv1051 13 54364547 54409293 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9128 S 9 0 1 "" NA12156 nsv523903 13 54450707 54452304 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699746 S 2026 0 1 "" nsv437787 13 54582768 54593306 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467668 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19103 nsv518200 13 54635835 54662634 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695623 S 2026 0 1 "" nsv521367 13 54690941 56949393 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697977 S 2026 0 1 "" nsv832615 13 54782467 54980136 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450262 S 95 0 1 "" nsv64257 13 54839184 54839473 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv82835 M 24 "" nsv524440 13 54888586 54891841 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700371 S 2026 0 1 "" nsv832616 13 55011714 55221689 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450263 S 95 1 0 "" nsv455892 13 55077481 55153829 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533349 S 1557 0 1 "" 1780854417_A nsv832617 13 55148770 55311110 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450264 S 95 1 0 "" nsv455893 13 55214485 55302250 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533350 S 1557 0 1 "" NINDS_2 nsv455894 13 55329151 55403182 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533351 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00214 nsv1052 13 55558953 55593081 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9129 S 9 1 0 "" NA12156 nsv507700 13 55565196 55571196 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620538,nssv617861,nssv623136,nssv619105 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv832618 13 55632433 55798271 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450265 S 95 1 0 "" nsv1053 13 55739574 55769981 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9992 S 9 1 0 "" NA18956 nsv64150 13 55972211 55973727 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv82728 M 24 "" nsv1055 13 56138856 56162164 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2039 S 9 0 1 "" NA18555 nsv518435 13 56366937 56401046 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695871 S 2026 0 1 "" nsv1056 13 56376210 56407640 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6562 S 9 1 0 "" NA12156 dgv559e1 13 56523625 56729961 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv3283,essv805,essv8858,essv688,essv1514,essv21790,essv23841,essv20224,essv22643,essv12000,essv9606,essv14869,essv6722,essv24000,essv1743,essv764,essv10802,essv10107,essv2468,essv22877,essv876,essv4201,essv15703,essv5569,essv12195,essv3170,essv6185,essv8733,essv10534,essv10013,essv6917,essv21820,essv21015,essv4553,essv22124,essv4492,essv8641,essv11230,essv22969,essv15551,essv8232,essv6593,essv24765,essv14174,essv16038,essv4897,essv6733,essv11812,essv14280,essv4673,essv9101,essv5815,essv1376,essv11000,essv17243,essv13614,essv22336,essv17009,essv2187,essv24432,essv12988,essv18409,essv11666,essv3028,essv24919,essv16428,essv22542,essv16497,essv21670,essv9885,essv18823,essv10487,essv17781,essv9438,essv22477,essv10342,essv7781,essv5232,essv10232,essv8934,essv4982,essv12315,essv17702,essv4041,essv8121,essv23553,essv16322,essv20920,essv15871,essv4421,essv9387,essv19594,essv21276,essv24489,essv4618,essv20395,essv12583,essv13833,essv20012,essv10684,essv15389,essv23805,essv17308,essv13764,essv19934,essv8363,essv13432,essv4292,essv20785,essv14484,essv24584,essv23509,essv14060,essv23960,essv18110,essv3736,essv11840,essv15346,essv21132,essv6251,essv21200,essv20554,essv9777,essv14996,essv19082,essv19186,essv17145,essv21973,essv18260,essv14401,essv21515,essv12751,essv7546,essv17075,essv1591,essv5222,essv7726,essv1476,essv3697,essv22512,essv24134,essv2082,essv14700,essv1180,essv434,essv22771,essv12618,essv24059,essv21436,essv23219,essv1916,essv13698,essv1138,essv12485,essv11759,essv10394,essv4733,essv20137,essv15503,essv18695,essv106,essv22240,essv24478 M 271 0 0 "" NA06985,NA06991,NA06993,NA06994,NA07019,NA07022,NA07034,NA07048,NA07055,NA07056,NA07345,NA07348,NA07357,NA10830,NA10831,NA10846,NA10847,NA10855,NA10857,NA10859,NA10860,NA11830,NA11839,NA11882,NA11992,NA11993,NA11995,NA12044,NA12056,NA12144,NA12146,NA12155,NA12156,NA12239,NA12248,NA12249,NA12707,NA12716,NA12717,NA12751,NA12752,NA12760,NA12761,NA12763,NA12801,NA12802,NA12813,NA12814,NA12815,NA12865,NA12872,NA12873,NA12874,NA18500,NA18501,NA18503,NA18504,NA18505,NA18506,NA18507,NA18508,NA18515,NA18517,NA18521,NA18522,NA18523,NA18524,NA18526,NA18529,NA18532,NA18542,NA18545,NA18552,NA18561,NA18562,NA18566,NA18573,NA18594,NA18603,NA18605,NA18608,NA18611,NA18620,NA18621,NA18622,NA18624,NA18633,NA18635,NA18636,NA18637,NA18853,NA18854,NA18855,NA18856,NA18858,NA18859,NA18861,NA18862,NA18863,NA18870,NA18912,NA18914,NA18942,NA18944,NA18947,NA18949,NA18951,NA18952,NA18956,NA18959,NA18960,NA18961,NA18964,NA18968,NA18972,NA18973,NA18975,NA18980,NA18981,NA18997,NA18999,NA19000,NA19007,NA19012,NA19092,NA19098,NA19099,NA19101,NA19116,NA19119,NA19127,NA19130,NA19132,NA19137,NA19138,NA19139,NA19140,NA19141,NA19143,NA19144,NA19145,NA19152,NA19153,NA19154,NA19159,NA19171,NA19172,NA19192,NA19193,NA19194,NA19200,NA19202,NA19203,NA19204,NA19206,NA19207,NA19208,NA19210,NA19221,NA19222,NA19223,NA19239,NA19240 esv500 13 56523625 56824435 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent + Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 "" nsv9072 13 56585659 56657380 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19492,nssv18730,nssv20900,nssv21789,nssv24256,nssv20454,nssv22378,nssv24216,nssv21877,nssv22348,nssv19922,nssv21295,nssv24502,nssv26488,nssv21818,nssv23565,nssv23407 M 31 12 5 Samples from several populations that are part of the HapMap project. "" NA07029,NA11830,NA12155,NA12740,NA12802,NA18504,NA18517,NA18853,NA18942,NA18972,NA18975,NA18980,NA19132,NA19144,NA19221,NA19240 nsv510930 13 56594427 56659711 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618671 S 4 0 0 "" CHM dgv560e1 13 56600591 56729961 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv15080,essv5132,essv14592,essv14477,essv16112,essv15216,essv18943 M 271 0 0 "" NA12005,NA18577,NA19093,NA19094,NA19100,NA19129,NA19201 essv9957 13 56601020 56805841 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19204 nsv832619 13 56601346 56773819 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450266,nssv1450268,nssv1450269,nssv1450267 M 95 4 0 "" nsv1057 13 56601405 56620893 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9993 S 9 1 0 "" NA18956 nsv509505 13 56609635 56661833 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619630,nssv623648,nssv620989 M 4 3 0 "" NA10860,NA15510,NA18994 nsv1058 13 56610803 56726078 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9494,nssv1147 M 9 0 2 "" NA18507,NA19240 nsv1059 13 56637480 56656866 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4074 S 9 1 0 "" NA12878 nsv471367 13 56639332 56642353 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548085,nssv548084,nssv548086 M 3 "" nsv482167 13 56639332 56642353 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558528 S 1 1 0 "" KB1 nsv9073 13 56650401 56725064 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24742,nssv23593,nssv23435,nssv20930,nssv24228,nssv21527,nssv24254,nssv24312,nssv22408,nssv19061,nssv22468,nssv20484,nssv21124 M 31 1 11 Samples from several populations that are part of the HapMap project. "" NA10839,NA12872,NA18502,NA18504,NA18517,NA18563,NA18853,NA18860,NA18975,NA19144,NA19240 nsv438252 13 56653475 56683831 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470600,nssv470599,nssv470603,nssv470605,nssv470602,nssv470606,nssv470601,nssv470604 M 269 0 4 Samples from several populations that are part of the HapMap project. "" NA06985,NA06991,NA10861,NA11995 nsv442671 13 56656271 56676381 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" esv32675 13 56657400 56687078 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101487,essv99832,essv93317 M 51 0 3 "" 21603,22086,22170 nsv433526 13 56659471 56673101 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463407 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA19129 dgv7n14 13 56659471 56680301 CNV Loss Cooper et al 2008 18776910 SNP_array nsv433528,nsv433527 M 9 0 2 "" NA18517,NA19240 nsv437165 13 56663478 56690156 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467046 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA10861 nsv437788 13 56676527 56690340 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467669 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19142 nsv437789 13 56680301 56882916 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467670 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19129 nsv510337 13 56689156 56695156 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618387,nssv624140,nssv622227,nssv621399 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv455898 13 56690719 56711568 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533353 S 1557 0 1 "" NINDS_45 nsv818963 13 56690719 56717452 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418204,nssv1418205 M 112 0 2 "" NA19144,NA19145 nsv516990 13 56690719 56734345 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv690813,nssv677915,nssv662315,nssv682057,nssv676927,nssv653255,nssv674715,nssv673472,nssv665663,nssv693957,nssv666473,nssv653568,nssv678530,nssv655989 M 2026 14 0 "" nsv522124 13 56690719 56816365 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694898 S 2026 0 1 "" nsv442308 13 56708301 56721044 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv818964 13 56711568 56717452 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416492 S 112 1 0 "" NA18516 nsv526710 13 56711568 56786987 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703049 S 2026 0 1 "" dgv561e1 13 56739785 56790661 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv13287,essv16392 M 271 0 0 "" NA19172,NA19202 nsv517203 13 56748616 56790893 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv661742,nssv661404,nssv659010,nssv660303,nssv684271,nssv668664,nssv677748,nssv674555,nssv668540,nssv671638,nssv682590,nssv652890,nssv684565,nssv668972,nssv672046,nssv669317,nssv692484,nssv677232,nssv683882,nssv684396,nssv690034,nssv658186,nssv675501,nssv690254,nssv670039,nssv664848,nssv688993,nssv677421,nssv654000,nssv696390,nssv686577,nssv660927,nssv693096,nssv665433,nssv671585,nssv665305,nssv655095,nssv688442,nssv693402,nssv668584,nssv658689,nssv674676,nssv675666,nssv664943,nssv672306,nssv659848,nssv677723,nssv660682 M 2026 0 48 "" essv14208 13 56755082 56790236 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18913 essv14947 13 56755082 56824435 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19132 nsv9074 13 56762436 56787198 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24242 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19132 nsv442672 13 56767188 56786596 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv562e1 13 56772419 56777459 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv13242,essv13269,essv13499 M 271 0 0 "" NA18914,NA19131,NA19201 essv8699 13 56772419 56805841 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18912 nsv455899 13 56772821 56786987 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533354 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00939 nsv818965 13 56772821 56786987 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416593 S 112 0 1 "" NA19172 nsv437791 13 56772821 56792382 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467672 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18914 nsv9075 13 56806201 56809969 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24768 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18860 nsv442309 13 56842712 56848581 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv64011 13 56857691 56857773 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv82589 M 24 "" nsv832620 13 57028661 57200264 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450270 S 95 1 0 "" nsv507701 13 57122509 57128509 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620540 S 4 1 0 "" NA15510 nsv1060 13 57133857 57165294 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1148 S 9 1 0 "" NA19240 nsv518063 13 57152774 57156095 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695475 S 2026 0 1 "" nsv526745 13 57152774 57159918 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703089 S 2026 0 1 "" nsv527993 13 57156095 57159918 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704516 S 2026 0 1 "" nsv64099 13 57284075 57284452 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv82677 M 24 "" nsv1061 13 57425601 57459269 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5479 S 9 1 0 "" NA19129 nsv64414 13 57426928 57426985 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv82992 M 24 "" nsv517500 13 57431554 57449354 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv662316,nssv677422,nssv689936,nssv686861,nssv652196,nssv662730,nssv667360,nssv682572,nssv658122,nssv688787,nssv667992 M 2026 0 11 "" nsv442310 13 57488282 57495029 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv510586 13 57490690 57498786 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617407 S 4 0 1 "" CHM nsv517720 13 57491658 57497032 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv666587,nssv688443,nssv675855,nssv663516,nssv680424,nssv671981,nssv681250,nssv682980,nssv664350,nssv652976,nssv675868,nssv692578,nssv678237,nssv662105,nssv684862,nssv668244,nssv688832,nssv662597,nssv655499,nssv655964,nssv668754,nssv656072,nssv659867,nssv677187,nssv666015,nssv661856,nssv681214,nssv668170,nssv679944,nssv663921,nssv678695,nssv653302,nssv676546,nssv665725,nssv676466,nssv690625,nssv681665 M 2026 0 37 "" nsv818967 13 57555675 57571289 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417923 S 112 1 0 "" NA18852 nsv518427 13 57566704 57571289 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695862 S 2026 0 1 "" dgv226n27 13 57607912 57661603 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv455900,nsv455901 M 1557 0 2 "" HGDP00818,HGDP01095 nsv818968 13 57688067 57698033 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417130 S 112 1 0 "" NA18537 nsv1062 13 57695924 57728218 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1149 S 9 1 0 "" NA19240 nsv1063 13 57783638 57817199 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5480 S 9 1 0 "" NA19129 nsv509506 13 57805834 57817507 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619631 S 4 1 0 "" NA10860 nsv526851 13 58019803 58021020 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703209 S 2026 0 1 "" nsv519764 13 58195136 58199168 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697037 S 2026 0 1 "" nsv64070 13 58211382 58211681 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv82648 M 24 "" nsv1064 13 58234013 58254738 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9130 S 9 0 1 "" NA12156 nsv524769 13 58259783 58266058 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700760 S 2026 0 1 "" nsv519994 13 58266058 58271006 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697167 S 2026 0 1 "" nsv525820 13 58266058 58275096 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702006 S 2026 0 1 "" nsv522995 13 58270439 58271006 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698665 S 2026 0 1 "" nsv515982 13 58272829 58275096 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv657838,nssv690599,nssv691156,nssv665580,nssv660213,nssv661463,nssv674118,nssv660014,nssv693740 M 2026 0 9 "" nsv520208 13 58551843 58561359 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv661874,nssv688761,nssv671469 M 2026 0 3 "" nsv832621 13 58682625 58836694 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450271,nssv1450273 M 95 2 0 "" nsv507702 13 58753328 58759328 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623137 S 4 1 0 "" NA18994 nsv507703 13 58916730 58922730 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619106,nssv617862 M 4 2 0 "" CHM,NA10860 nsv1066 13 59089309 59134110 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9131 S 9 0 1 "" NA12156 nsv64385 13 59096797 59103788 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv82963 M 24 "" nsv507704 13 59206629 59212629 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619107,nssv617863,nssv623138 M 4 3 0 "" CHM,NA10860,NA18994 nsv519334 13 59308393 59331525 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696798 S 2026 0 1 "" nsv832622 13 59496878 59695553 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450274,nssv1450275,nssv1450276,nssv1450277 M 95 1 3 "" nsv64137 13 59520940 59521078 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv82715 M 24 "" nsv64931 13 59525116 59533672 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv83509 M 24 "" nsv455903 13 59875087 60007964 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533357 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00682 nsv523359 13 59875087 60022262 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699108 S 2026 0 1 "" nsv521268 13 60115897 60122519 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv692115,nssv690794 M 2026 0 2 "" esv32591 13 60151038 60154881 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100063 S 51 0 1 "" 22086 nsv832623 13 60201819 60366577 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450278,nssv1450279 M 95 2 0 "" nsv64634 13 60260091 60260191 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv83212 M 24 "" nsv832624 13 60281649 60451975 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450280 S 95 1 0 "" nsv1067 13 60337559 60371635 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9132,nssv4075,nssv9994,nssv2040 M 9 4 0 "" NA12156,NA12878,NA18555,NA18956 nsv509507 13 60358438 60360664 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619632,nssv623649 M 4 2 0 "" NA10860,NA18994 nsv832626 13 60443192 60596234 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450281 S 95 1 0 "" nsv510338 13 60448141 60454141 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622228 S 4 0 1 "" NA10860 nsv528594 13 60485016 60491887 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705220 S 2026 1 0 "" nsv832627 13 60540812 60727218 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450282 S 95 1 0 "" nsv507705 13 60607342 60613342 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619108 S 4 1 0 "" NA10860 nsv442311 13 60611470 60616344 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv516139 13 60636792 60642696 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv684669,nssv666448,nssv690795 M 2026 0 3 "" nsv518287 13 60765725 60771380 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694222 S 2026 1 0 "" nsv455904 13 60781624 60851407 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533358 S 1557 0 1 "" 1780862312_A nsv521309 13 60850004 60851908 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697916 S 2026 0 1 "" nsv510587 13 60877754 60892054 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620061 S 4 0 1 "" NA15510 nsv832628 13 60883541 61051693 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450284 S 95 0 1 "" nsv1068 13 60961179 61006405 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9133 S 9 0 1 "" NA12156 nsv526801 13 61045475 61045536 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703155 S 2026 0 1 "" nsv528090 13 61073239 61088999 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704626 S 2026 0 1 "" nsv455905 13 61088375 61090632 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533359 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00613 nsv518612 13 61088999 61090632 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696058 S 2026 0 1 "" nsv832629 13 61218370 61395239 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450285 S 95 1 0 "" nsv510588 13 61377355 61380717 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622671 S 4 0 1 "" NA18994 nsv510339 13 61434690 61440690 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622229 S 4 0 1 "" NA10860 nsv832630 13 61549866 61709429 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450287,nssv1450286 M 95 2 0 "" dgv110n21 13 61569408 61578230 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv518640,nsv526572 M 2026 0 2 "" nsv523042 13 61943642 61945020 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698725 S 2026 0 1 "" nsv818969 13 62008607 62015161 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416968 S 112 0 1 "" NA19138 nsv519895 13 62009279 62015161 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697111 S 2026 0 1 "" dgv563e1 13 62097238 62619249 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv780,essv763,essv3433 M 271 0 0 "" NA18956 nsv516866 13 62127880 62131897 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv677846,nssv693256,nssv681019,nssv654538,nssv678665 M 2026 0 5 "" nsv455907 13 62127880 62157034 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533360 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00007 dgv564e1 13 62179940 62527158 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv829,essv1322 M 271 0 0 "" NA18973 dgv76e55 13 62179940 62535278 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv34296,esv34669 M 771 0 2 "" NA18956,NA18973 nsv1069 13 62203908 62542060 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9995,nssv9135 M 9 0 2 "" NA12156,NA18956 nsv442312 13 62216545 62527158 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv433269 13 62226404 62408732 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463150 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA18956 nsv832631 13 62260735 62430051 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450296,nssv1450293,nssv1450292,nssv1450299,nssv1450298,nssv1450297,nssv1450290,nssv1450291,nssv1450289,nssv1450288 M 95 10 0 "" nsv519723 13 62291269 62305059 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv674119,nssv681763,nssv657933 M 2026 0 3 "" nsv832632 13 62427545 62590439 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450300 S 95 1 0 "" nsv433270 13 62437681 62527158 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463151 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA18956 nsv455909 13 62457476 62555192 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533362 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00872 nsv510591 13 62496574 62506413 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620062 S 4 0 1 "" NA15510 nsv64505 13 62505673 62505673 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv83083 M 24 "" nsv64867 13 62522553 62522686 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv83445 M 24 "" nsv469654 13 62681763 62844117 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649582 M 265 0 2 Samples from several populations that are part of the HapMap project. "" nsv9076 13 62769207 62771351 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24528 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18972 nsv455910 13 62867263 62903084 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533363 S 1557 0 1 "" 1780854536_A nsv521298 13 62884900 62890470 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697905 S 2026 0 1 "" nsv455911 13 62884900 62906925 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533364 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00567 nsv510340 13 63077829 63083829 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624141 S 4 0 1 "" NA18994 nsv524746 13 63082454 63241820 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700737 S 2026 1 0 "" nsv521156 13 63091225 63092661 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697818 S 2026 0 1 "" nsv455912 13 63091225 63139240 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533365 S 1557 0 1 "" 1780854495_A nsv455913 13 63100643 63108399 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533366 S 1557 0 1 "" 1780862394_A nsv442673 13 63122789 63134693 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv516838 13 63158774 63241820 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv654354,nssv682839,nssv663299,nssv687102,nssv686805,nssv677651,nssv681354,nssv675405,nssv678631,nssv671668,nssv684397,nssv660328 M 2026 0 12 "" nsv7244 13 63161559 63260366 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9495,nssv9954,nssv9292,nssv2041 M 9 0 0 "" NA18507,NA18517,NA18555 nsv9077 13 63189262 63192710 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20960 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18853 dgv565e1 13 63201508 63285508 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv9284,esv934 M 271 0 0 "" NA19137 nsv442313 13 63227094 63303323 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv9078 13 63237863 63241311 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20990 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18853 nsv832633 13 63283306 63419488 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450301 S 95 0 1 "" nsv9079 13 63290403 63299597 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24268 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19132 nsv516171 13 63330923 63834244 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv658837,nssv658764,nssv675829,nssv677959,nssv699212,nssv666612,nssv658043 M 2026 0 7 "" nsv455914 13 63330923 64266491 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533367 S 1557 1 0 "" 1780862585_A nsv832634 13 63481793 63635417 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450302 S 95 1 0 "" nsv1070 13 63570657 63616366 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6563 S 9 0 1 "" NA12156 nsv1071 13 63753435 63787537 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2903 S 9 1 0 "" NA18555 nsv821672 13 64056794 65087468 CNV Loss Sebat_et_al_2004 15273396 ROMA Custom Nimblegen photoprint 85000 probe ROMA oligo array nssv1421247 S 31 0 1 "" nsv818970 13 64091125 64094066 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417371 S 112 0 1 "" NA18944 nsv507706 13 64094991 64100991 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617864 S 4 1 0 "" CHM nsv528825 13 64125776 64127480 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705499 S 2026 0 1 "" nsv510341 13 64134389 64140389 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622230 S 4 0 1 "" NA10860 nsv442314 13 64198454 64209619 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv510342 13 64199248 64205248 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622231 S 4 0 1 "" NA10860 nsv9081 13 64214146 64220063 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24793 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18860 nsv832635 13 64317369 64472768 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450303 S 95 0 1 "" nsv507707 13 64374702 64380702 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620541,nssv623140 M 4 2 0 "" NA15510,NA18994 nsv9082 13 64419177 64429388 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21154 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA10839 nsv524318 13 64426336 64432998 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700221 S 2026 0 1 "" nsv519044 13 64644183 64696304 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696514 S 2026 1 0 "" nsv1072 13 64699555 64700706 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9996 S 9 1 0 "" NA18956 nsv832637 13 64741928 64903073 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450319,nssv1450311,nssv1450324,nssv1450322,nssv1450321,nssv1450310,nssv1450316,nssv1450326,nssv1450325,nssv1450323,nssv1450318,nssv1450312,nssv1450320,nssv1450315,nssv1450309,nssv1450305,nssv1450304,nssv1450314,nssv1450308,nssv1450313,nssv1450307 M 95 21 0 "" esv2751147 13 64770832 64941203 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6983980,essv6983981,essv6989403 M 771 0 1 "" BEC_74 dgv227n27 13 64808793 65406345 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv455917,nsv455916 M 1557 2 0 "" 1780862162_A,HGDP00224 nsv455918 13 64889907 65047009 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533370 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01184 essv17755 13 65062295 65222213 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA10831 dgv566e1 13 65062295 65292451 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv7356,esv619 M 271 0 0 "" NA18570 nsv442315 13 65094528 65103708 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv525504 13 65099818 65103110 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701636 S 2026 0 1 "" essv5073 13 65128608 65255649 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18570 esv34387 13 65133107 65253636 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6979545,essv6979546,essv6979547 M 771 1 0 "" NA18570 nsv832638 13 65240398 65396164 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450327 S 95 1 0 "" nsv521036 13 65252630 65254943 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv680341,nssv683585 M 2026 0 2 "" nsv9083 13 65253468 65261274 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26502 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19221 nsv455920 13 65265526 65383952 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533371 S 1557 0 1 "" NINDS_66 nsv455921 13 65376226 65398874 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533372 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00039 nsv521792 13 65589811 65611679 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694562 S 2026 1 0 "" nsv1073 13 65681290 65716219 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1150 S 9 1 0 "" NA19240 nsv510343 13 65765133 65771133 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624142 S 4 0 1 "" NA18994 dgv567e1 13 65903813 66017201 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv3495,esv1431,essv1543 M 271 0 0 "" NA18999,NA19012 nsv9084 13 65909211 65912948 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24310 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18502 essv4340 13 65912427 65932491 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18622 nsv1074 13 65920231 65938773 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9496 S 9 1 0 "" NA18507 esv2422196 13 65939891 66193481 CNV Deletion Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161239 S 181 0 1 "" ND01690 nsv832639 13 65947801 66121702 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450329 S 95 1 0 "" dgv228n27 13 65996376 66067479 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv455927,nsv455923,nsv455924,nsv455925 M 1557 0 4 "" HGDP00037,HGDP00070,HGDP00080,HGDP00736 nsv455926 13 65996376 66098655 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533376 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00175 nsv455928 13 66110423 66290299 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533378 S 1557 0 1 "" NINDS_69 nsv455929 13 66118804 66154280 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533379 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00029 esv34348 13 66129500 66223787 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6979634,essv6979635,essv6988212,essv6989107 M 771 0 1 "" NA18592 dgv568e1 13 66129506 66217983 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv6428,esv1074 M 271 0 0 "" NA18592 nsv455931 13 66133612 66195899 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533380 S 1557 0 1 "" 1780854261_A nsv455932 13 66195899 66241267 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533381 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00710 nsv523360 13 66220715 66418345 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699109 S 2026 0 1 "" nsv528416 13 66280799 66290299 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705008 S 2026 0 1 "" nsv455933 13 66290299 66335317 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533382 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00846 nsv64575 13 66299508 66301850 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv83153 M 24 "" nsv832640 13 66358305 66533967 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450330 S 95 1 0 "" nsv437166 13 66397280 66426574 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467047 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA10857 nsv507708 13 66402184 66408184 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623141,nssv620542,nssv619109 M 4 3 0 "" NA10860,NA15510,NA18994 nsv818971 13 66409431 66425245 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416983,nssv1416972 M 112 0 2 "" NA10857,NA12043 nsv438254 13 66410969 66418345 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470609,nssv470608 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA10857,NA12043 nsv518201 13 66547600 66549062 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695624 S 2026 0 1 "" nsv832641 13 66569692 66606714 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450334,nssv1450337,nssv1450333,nssv1450335,nssv1450336,nssv1450332,nssv1450331 M 95 0 7 "" nsv522396 13 66636743 66638759 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695176 S 2026 0 1 "" nsv527729 13 66752437 66945718 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704211 S 2026 0 1 "" nsv64280 13 66795336 66795401 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv82858 M 24 "" nsv64120 13 66848544 66848595 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv82698 M 24 "" nsv64400 13 66848596 66848647 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv82978 M 24 "" nsv442316 13 66945140 66954900 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv516031 13 66945718 66993176 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv684566,nssv676106,nssv665821 M 2026 0 3 "" nsv455934 13 66961344 66993176 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533383 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01031 nsv525828 13 66979048 67042169 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702017 S 2026 1 0 "" nsv510344 13 67063764 67069764 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622232 S 4 0 1 "" NA10860 nsv1075 13 67196875 67241318 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2042 S 9 0 1 "" NA18555 nsv510608 13 67221772 67236108 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620063 S 4 0 1 "" NA15510 nsv832642 13 67504872 67681892 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450338 S 95 0 1 "" nsv510345 13 67700031 67706031 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624143 S 4 0 1 "" NA18994 nsv526751 13 67702749 67731595 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703097 S 2026 0 1 "" nsv510346 13 67810613 67816613 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621400,nssv618388,nssv624144,nssv622233 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv510609 13 67832604 67872513 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622673 S 4 0 1 "" NA18994 nsv64114 13 67834890 67835265 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv82692 M 24 "" nsv518145 13 67840848 67841498 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695566 S 2026 0 1 "" nsv455936 13 67840848 67926482 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533384 S 1557 0 1 "" NINDS_158 nsv528660 13 67879660 68103919 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705294 S 2026 0 1 "" nsv818972 13 67912813 67926482 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417924 S 112 1 0 "" NA18852 nsv437792 13 68025120 68040299 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467673 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18500 nsv521148 13 68027160 68030249 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv690235,nssv683072,nssv687492 M 2026 0 3 "" nsv526852 13 68103919 68110347 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703210 S 2026 1 0 "" nsv9085 13 68131593 68142130 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22498 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19144 nsv1078 13 68132474 68185003 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10914 S 9 0 1 "" NA15510 nsv455937 13 68134636 68138946 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533385 S 1557 0 1 "" 1782681076_A nsv437167 13 68136289 68170158 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467048 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA10855 nsv455938 13 68137915 68159813 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533386 S 1557 0 1 "" NINDS_125 esv32770 13 68138941 68163552 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101448,essv98817,essv100738,essv97059,essv99022,essv93744,essv97199,essv99838,essv93252,essv98417 M 51 10 0 "" 21603,21606,21656,21817,21938,21972,22075,22086,22170,22352 nsv516956 13 68138946 68159813 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv653076,nssv680960,nssv666669,nssv691734,nssv662981,nssv660733,nssv676145,nssv677146,nssv651740,nssv678452,nssv661464,nssv672891,nssv668332,nssv655838,nssv690097,nssv692052,nssv663940,nssv676335,nssv664307,nssv661224,nssv653449,nssv665434,nssv652995,nssv682224,nssv654049,nssv668541,nssv671224,nssv676278,nssv691044,nssv683048,nssv684066,nssv672857,nssv690885,nssv675462,nssv668755,nssv655606,nssv662731,nssv664182,nssv664364,nssv686348,nssv675487,nssv688860,nssv662880,nssv685139,nssv675811,nssv659817,nssv662402,nssv674491,nssv683856,nssv669499,nssv682256,nssv691643,nssv660508,nssv651866,nssv671171,nssv685225,nssv686274,nssv692400,nssv661490,nssv673305,nssv654131,nssv656302,nssv690176,nssv666413,nssv672548,nssv666278,nssv655146,nssv690849,nssv660972,nssv673123,nssv679823,nssv681502,nssv654071,nssv662588,nssv682431,nssv656584,nssv666432,nssv681277,nssv668585,nssv685689,nssv686259,nssv667705,nssv653501,nssv653973,nssv655500,nssv682368,nssv663039,nssv666747,nssv676683,nssv681953,nssv652622,nssv664803,nssv664649,nssv662106,nssv657530,nssv675693,nssv670776,nssv663517,nssv670399,nssv671565,nssv654222,nssv683685,nssv662947,nssv678318,nssv658970,nssv655229,nssv681034,nssv671769,nssv662845,nssv675158,nssv654206,nssv677789,nssv678168,nssv667212,nssv686333,nssv683412,nssv658749,nssv684454,nssv676483,nssv669883,nssv668153,nssv668985,nssv671909,nssv660708,nssv654607,nssv655901,nssv653135,nssv679558,nssv674970,nssv676806,nssv666474,nssv689829,nssv658044,nssv684498,nssv662747,nssv678531,nssv660214,nssv689786,nssv681937,nssv692277,nssv684487,nssv675000,nssv667424,nssv672224,nssv673988,nssv681355,nssv653113,nssv682108,nssv683276,nssv664776,nssv655854,nssv670687,nssv665745,nssv686615,nssv685159,nssv657948,nssv686249,nssv652013,nssv689065,nssv679583,nssv685793,nssv686084,nssv657198,nssv655751,nssv683835,nssv690529,nssv659893,nssv652797,nssv653094,nssv691292 M 2026 0 170 "" nsv9086 13 68142130 68163183 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21848 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA12155 dgv229n27 13 68147928 68159813 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv455942,nsv455947,nsv455939,nsv455950,nsv455949,nsv455946,nsv455953,nsv455948,nsv455940,nsv455954,nsv455945,nsv455955,nsv455943,nsv455951,nsv455944 M 1557 0 15 "" 1780854017_A,1780854573_A,1780862002_A,HGDP00710,HGDP00838,HGDP00845,HGDP00846,HGDP00852,HGDP00875,HGDP00970,HGDP00986,HGDP00998,HGDP01009,NINDS_165,NINDS_67 nsv818973 13 68147928 68159813 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415696,nssv1415697,nssv1416269,nssv1418023,nssv1418024,nssv1415698 M 112 0 6 "" NA07345,NA07348,NA10835,NA12056,NA12248,NA12249 nsv433271 13 68147928 68164923 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463152 S 9 0 1 "" NA15510 nsv442674 13 68149981 68166243 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv438255 13 68150839 68155761 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470610,nssv470611 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA10855,NA11832 dgv230n27 13 68151863 68159813 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv455956,nsv455957 M 1557 0 2 "" 1780862080_A,HGDP00654 nsv510610 13 68154643 68168981 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618902 S 4 0 1 "" NA10860 dgv569e1 13 68253637 68290580 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1013,essv2420 M 271 0 0 "" NA18951 nsv510611 13 68257652 68261704 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620064 S 4 0 1 "" NA15510 nsv818974 13 68285687 68289513 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417404 S 112 0 1 "" NA18951 nsv455958 13 68346115 68379734 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533406 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00626 nsv455960 13 68437183 68488678 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533407 S 1557 0 1 "" 1780862380_A nsv818975 13 68460886 68491474 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418504 S 112 0 1 "" NA19193 nsv523066 13 68480135 68481740 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698752 S 2026 0 1 "" nsv516856 13 68556977 68557913 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv654775,nssv654468,nssv675376 M 2026 3 0 "" nsv455961 13 68556977 68599293 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533408 S 1557 0 1 "" 1782681080_A nsv507709 13 68633738 68639738 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619110,nssv620543 M 4 2 0 "" NA10860,NA15510 nsv523455 13 68638182 68639898 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699213 S 2026 0 1 "" nsv818976 13 68660896 68664391 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417670 S 112 1 0 "" NA18994 dgv231n27 13 68660944 68673098 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv455965,nsv455964 M 1557 0 2 "" NINDS_114,NINDS_142 dgv111n21 13 68778147 68778302 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv528300,nsv523328 M 2026 0 2 "" nsv832643 13 69222441 69384662 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450340 S 95 1 0 "" nsv510347 13 69312540 69318540 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621401,nssv622234,nssv624145 M 4 0 3 "" NA10860,NA15510,NA18994 esv2422425 13 69493690 69538063 CNV Deletion Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161423 S 181 0 1 "" ND01570 nsv455967 13 69538646 69604009 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533411 S 1557 0 1 "" 1780854197_A nsv519463 13 69542891 69546838 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv656276,nssv657579,nssv689258,nssv660887,nssv673962,nssv672506 M 2026 0 6 "" nsv9087 13 69633412 69673593 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21878,nssv21557,nssv20926,nssv23463,nssv21184,nssv24818,nssv26516,nssv21615,nssv20616,nssv24554,nssv21819,nssv24338,nssv21325,nssv19952,nssv20823,nssv24324,nssv19121,nssv22528,nssv21719,nssv19279,nssv21907,nssv20786,nssv19522,nssv20514,nssv19235,nssv23621,nssv18790,nssv21020,nssv24336,nssv20988 M 31 30 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10847,NA10863,NA11830,NA12155,NA12740,NA12802,NA12872,NA18502,NA18504,NA18517,NA18537,NA18552,NA18563,NA18564,NA18572,NA18853,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19144,NA19173,NA19221,NA19240 dgv77e55 13 69634065 69678281 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv2751150,esv2751148,esv2751149,esv2751151 M 771 0 4 "" BEC_343,BEC_395,BEC_405,SPC_108 dgv570e1 13 69634065 69687992 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv18691,essv21958,essv18556,esv1053 M 271 0 0 "" NA07000,NA10851,NA12056 nsv818978 13 69637654 69666685 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416271,nssv1417064,nssv1416270 M 112 0 3 "" NA07000,NA10851,NA12056 dgv232n27 13 69637654 69676218 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv455973,nsv455972,nsv455971 M 1557 0 3 "" 1780862226_A,1780862384_A,HGDP01300 nsv517757 13 69637654 69676218 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv676146,nssv655209,nssv688739,nssv680319,nssv677488,nssv665145,nssv687689,nssv692891,nssv671566,nssv693630,nssv669448,nssv673265,nssv653136,nssv686018,nssv687738,nssv662982,nssv655467,nssv668505,nssv674948,nssv670384,nssv684455,nssv673634,nssv682623 M 2026 0 23 "" nsv442318 13 69640329 69670896 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv510348 13 69642382 69648382 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624146 S 4 0 1 "" NA18994 dgv78e55 13 69642500 69670400 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv34403,esv35071 M 771 0 2 "" NA07000,NA10851 nsv455975 13 69647985 69666685 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533416 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01072 nsv455976 13 69647985 69676218 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533417 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00807 nsv519396 13 69705950 69717579 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv656946,nssv672027,nssv655902 M 2026 0 3 "" nsv1079 13 69713483 69758210 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9136 S 9 0 1 "" NA12156 nsv455977 13 69809017 69867303 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533418 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00584 nsv509508 13 69849594 69849594 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618102 S 4 1 0 "" CHM nsv516669 13 69969424 69982998 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv655583,nssv676928,nssv670040 M 2026 0 3 "" nsv455978 13 70006878 70094462 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533419 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01220 nsv528897 13 70245124 70250047 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705581 S 2026 0 1 "" nsv1080 13 70271599 70316874 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9137 S 9 0 1 "" NA12156 nsv832644 13 70276042 70440953 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450353,nssv1450347,nssv1450342,nssv1450341,nssv1450346,nssv1450345,nssv1450343,nssv1450354,nssv1450344,nssv1450352,nssv1450349,nssv1450351,nssv1450348 M 95 0 13 "" nsv527006 13 70307941 70307992 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703381 S 2026 0 1 "" dgv112n21 13 70310985 70328586 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv525164,nsv522371 M 2026 0 2 "" nsv442319 13 70314510 70328585 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv818979 13 70315922 70328586 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417259 S 112 0 1 "" NA18593 nsv455979 13 70318425 70328586 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533420 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01237 nsv528769 13 70440204 70443355 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705433 S 2026 0 1 "" nsv510349 13 70451269 70457269 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621403 S 4 0 1 "" NA15510 nsv522603 13 70629457 70639393 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705994 S 2026 0 1 "" nsv832645 13 70977801 71167555 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450357,nssv1450355,nssv1450356 M 95 3 0 "" nsv455981 13 71023642 71094982 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533421 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00963 nsv455984 13 71043339 71138564 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533422 S 1557 0 1 "" NINDS_189 nsv510612 13 71057047 71077622 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618903 S 4 0 1 "" NA10860 nsv64658 13 71207290 71207357 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv83236 M 24 "" nsv510350 13 71216207 71222207 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622235 S 4 0 1 "" NA10860 dgv571e1 13 71226326 71383406 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv22597,esv444,essv21006 M 271 0 0 "" NA06991,NA07348 nsv1081 13 71320260 71379689 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9138,nssv4076 M 9 0 2 "" NA12156,NA12878 nsv510613 13 71373946 71388298 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617408 S 4 0 1 "" CHM nsv9088 13 71374967 71378998 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21849,nssv19982,nssv21937,nssv19265,nssv21214 M 31 0 5 Samples from several populations that are part of the HapMap project. "" NA07029,NA10839,NA10847,NA11830,NA12740 nsv442675 13 71375556 71378557 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv1082 13 71619018 71663443 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4631 S 9 0 1 "" NA19129 nsv1083 13 71700235 71772953 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5481,nssv6564,nssv4078 M 9 0 3 "" NA12156,NA12878,NA19129 nsv517121 13 71708337 71710136 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv666967,nssv680373,nssv657437,nssv653817,nssv687578,nssv692167,nssv672916,nssv679945,nssv655965,nssv655825,nssv671963,nssv670385,nssv687863,nssv667464,nssv665286,nssv667213,nssv669924,nssv661925,nssv686862,nssv671703,nssv678505,nssv659572,nssv657557,nssv676211,nssv681189,nssv687473,nssv678238,nssv683883,nssv671105,nssv654469,nssv687790,nssv689235,nssv674142,nssv693348,nssv689914,nssv692241,nssv681686,nssv669681,nssv674082,nssv680614,nssv677524,nssv660242,nssv685290,nssv673529,nssv666414,nssv670308,nssv652456,nssv688572,nssv681421,nssv668898,nssv666588,nssv655501,nssv683125,nssv692777,nssv663318,nssv662756,nssv659011,nssv660329,nssv672730,nssv663848,nssv666389,nssv674434,nssv690177,nssv654900,nssv657182,nssv680551,nssv692534,nssv668613,nssv690626,nssv688715,nssv661875,nssv657070,nssv669298,nssv663147,nssv677669,nssv669336,nssv675724,nssv663619,nssv690830,nssv654034,nssv676049,nssv670343,nssv660667,nssv663237,nssv655990,nssv654223,nssv664392,nssv668448,nssv655444,nssv671225,nssv687288,nssv685578,nssv675125,nssv686349,nssv674716,nssv690066,nssv686132,nssv684670,nssv666016,nssv668008,nssv659191,nssv686200,nssv677402,nssv659606,nssv679166 M 2026 0 105 "" nsv528579 13 71708337 71727634 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705198 S 2026 0 1 "" nsv510614 13 71734774 71759268 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618904,nssv620065,nssv617409 M 4 0 3 "" CHM,NA10860,NA15510 nsv64819 13 71854708 71855019 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv83397 M 24 "" nsv1084 13 72092816 72122508 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5482 S 9 1 0 "" NA19129 nsv1085 13 72274253 72305016 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6565 S 9 1 0 "" NA12156 nsv517408 13 72457983 72501694 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv681992,nssv683640,nssv695651,nssv675159,nssv651933 M 2026 0 5 "" nsv521789 13 72542196 72543997 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694557 S 2026 0 1 "" nsv64411 13 72580554 72580623 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv82989 M 24 "" nsv64504 13 72602772 72604237 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv83082 M 24 "" dgv572e1 13 72712442 72713960 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1026,essv14230 M 271 0 0 "" NA18913 nsv64349 13 72715918 72717342 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv82927 M 24 "" dgv46n17 13 72917375 72923430 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437168,nsv437793 M 60 0 2 "" NA10846,NA19240 nsv510615 13 72961459 73006739 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620066 S 4 0 1 "" NA15510 nsv64536 13 72972923 72973250 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv83114 M 24 "" nsv1086 13 73187939 73219535 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5483 S 9 1 0 "" NA19129 nsv521444 13 73611440 75151355 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698055 S 2026 1 0 "" nsv510616 13 73664036 73770367 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618905 S 4 0 1 "" NA10860 nsv507710 13 73815178 73821178 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620544 S 4 1 0 "" NA15510 dgv113n21 13 73848534 73881155 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv527787,nsv520870 M 2026 0 2 "" nsv507711 13 73876150 73882150 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623142,nssv617865,nssv619111 M 4 3 0 "" CHM,NA10860,NA18994 dgv573e1 13 74102052 74275589 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv20170,esv450 M 271 0 0 "" NA11832 nsv1087 13 74117736 74119368 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9997 S 9 1 0 "" NA18956 nsv523922 13 74136098 74136213 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699765 S 2026 0 1 "" nsv519166 13 74179700 74194810 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696649 S 2026 1 0 "" nsv522783 13 74192936 74194810 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698426 S 2026 0 1 "" nsv525356 13 74469343 74480873 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701475 S 2026 0 1 "" nsv64034 13 74523201 74523278 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv82612 M 24 "" esv32759 13 74998122 74998286 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101556,essv98871,essv100856,essv93259,essv99595 M 51 0 5 "" 21603,21606,21656,22170,22217 nsv1089 13 75003040 75007929 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9497,nssv1151 M 9 2 0 "" NA18507,NA19240 nsv442676 13 75007535 75015769 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv525594 13 75009281 75017507 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701736 S 2026 1 0 "" nsv818980 13 75009281 75017507 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418505 S 112 1 0 "" NA19192 nsv1090 13 75014378 75037955 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1152 S 9 1 0 "" NA19240 esv2751152 13 75042200 75186419 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6982322,essv6982321 M 771 0 1 "" BEC_416 nsv1091 13 75180393 75225907 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6566 S 9 0 1 "" NA12156 nsv832646 13 75198429 75381103 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450358 S 95 1 0 "" dgv574e1 13 75219611 75440004 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv55,essv790,essv18618 M 271 0 0 "" NA12234,NA18956 nsv832649 13 75322873 75555892 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450359 S 95 0 1 "" nsv64510 13 75413584 75413584 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv83088 M 24 "" nsv471735 13 75506546 75510873 CNV Loss Hinds et al 2006 16327809 Oligo_aCGH,PCR Custom Perlegen arrays nssv646016 M 0.021 95 "" nsv9089 13 75506694 75509898 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21050 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18853 nsv818981 13 75508128 75510358 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417925 S 112 0 1 "" NA18853 nsv516991 13 75508128 75532902 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv677423,nssv674407,nssv666893,nssv653594,nssv677503,nssv683944,nssv686178,nssv704929,nssv673200,nssv657159,nssv680260,nssv675160,nssv690910,nssv677233,nssv658062,nssv653569,nssv652764,nssv677525,nssv657783 M 2026 0 19 "" nsv455988 13 75508562 75560924 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533424 S 1557 0 1 "" 1780854449_A nsv442320 13 75509750 75510848 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv520272 13 75798144 75801623 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697318 S 2026 0 1 "" nsv515972 13 75999906 76009637 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv689304,nssv655804,nssv686550,nssv668773,nssv655539,nssv677234,nssv666433,nssv685810,nssv687474,nssv665544 M 2026 0 10 "" nsv455989 13 76021534 76084706 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533425 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01398 nsv528630 13 76116574 76130697 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705260 S 2026 0 1 "" nsv832650 13 76123655 76293095 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450360 S 95 0 1 "" nsv832651 13 76260854 76446840 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450362,nssv1450363 M 95 2 0 "" nsv832652 13 76327243 76513643 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450364 S 95 1 0 "" nsv507712 13 76334862 76340862 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620545,nssv623143,nssv617866,nssv619112 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv518365 13 76390971 76396700 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694229 S 2026 0 1 "" nsv832653 13 76421035 76587357 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450365 S 95 0 1 "" nsv1092 13 76431915 76439543 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9139 S 9 0 1 "" NA12156 nsv528367 13 76472984 76473397 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704954 S 2026 0 1 "" dgv575e1 13 76523033 76666465 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2497,esv262 M 271 0 0 "" NA19003 nsv528143 13 76747276 76760985 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704689 S 2026 0 1 "" nsv1093 13 76835652 76879866 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2043 S 9 0 1 "" NA18555 nsv64245 13 76879196 76880744 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv82823 M 24 "" nsv507713 13 77506967 77512967 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617867 S 4 1 0 "" CHM nsv507714 13 77572136 77578136 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620546,nssv617868,nssv623144 M 4 3 0 "" CHM,NA15510,NA18994 nsv1094 13 77652103 77697848 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6568 S 9 0 1 "" NA12156 nsv516992 13 77665412 77665502 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv692027,nssv688120,nssv672280,nssv670688,nssv663040,nssv656585,nssv656089,nssv654035,nssv666415,nssv689143,nssv686488,nssv657199,nssv670233,nssv690392,nssv656671,nssv655805,nssv655855,nssv663468,nssv676255,nssv671016,nssv683706,nssv686896,nssv661711,nssv653570,nssv668877,nssv671290,nssv671910,nssv652711,nssv681190,nssv655381,nssv666940,nssv660621,nssv659523 M 2026 0 33 "" nsv515727 13 77704693 77705440 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv668266,nssv692091,nssv670933,nssv680342,nssv658279,nssv693459,nssv688833,nssv663184,nssv680320,nssv682170,nssv671567,nssv672440,nssv664591,nssv668245,nssv690886,nssv667839,nssv684968,nssv689416,nssv671186,nssv691606,nssv659868,nssv692168 M 2026 0 22 "" nsv525629 13 77704693 77706814 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701782 S 2026 0 1 "" nsv1095 13 77745635 77779835 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1154 S 9 1 0 "" NA19240 nsv832654 13 77747248 77994996 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450366 S 95 1 0 "" dgv233n27 13 77767282 77813845 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv455992,nsv455993,nsv455991 M 1557 3 0 "" HGDP01191,HGDP01309,HGDP01312 nsv1096 13 77791250 77826200 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4079 S 9 1 0 "" NA12878 nsv64597 13 77895642 77896751 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv83175 M 24 "" nsv510351 13 78002399 78008399 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621404,nssv618389,nssv624147,nssv622236 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 dgv114n21 13 78012662 78038844 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv526462,nsv528903 M 2026 0 2 "" dgv234n27 13 78038844 78114419 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv455995,nsv455994 M 1557 0 2 "" 1780862306_A,1780862444_A nsv1097 13 78048721 78081316 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2044 S 9 1 0 "" NA18555 nsv1098 13 78094254 78127714 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9141 S 9 1 0 "" NA12156 nsv442321 13 78101102 78105643 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv517259 13 78103413 78105589 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv693349,nssv658471,nssv684542,nssv654149,nssv673293 M 2026 0 5 "" nsv1100 13 78178069 78211097 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9142 S 9 1 0 "" NA12156 nsv64903 13 78178484 78178600 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv83481 M 24 "" nsv64675 13 78193095 78201193 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv83253 M 24 "" nsv510352 13 78255805 78261805 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622237 S 4 0 1 "" NA10860 dgv23n68 13 78313107 78537840 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH nsv832655,nsv832656 M 95 2 0 "" dgv32n6 13 78559069 78559417 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv64375,nsv64896 M 24 "" nsv523536 13 78718127 78722975 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699311 S 2026 0 1 "" nsv507715 13 78762616 78768616 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620547,nssv617869,nssv623145,nssv619113 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv832657 13 78802979 78997109 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450373,nssv1450371,nssv1450370,nssv1450369 M 95 4 0 "" nsv64617 13 78845136 78845287 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv83195 M 24 "" nsv64406 13 78864099 78864153 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv82984 M 24 "" nsv64677 13 78864341 78864412 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv83255 M 24 "" nsv523979 13 78877680 79018264 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699834 S 2026 0 1 "" nsv64679 13 78891360 78891428 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv83257 M 24 "" nsv7245 13 79261585 79343423 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9294,nssv9293 M 9 0 0 "" NA18517 nsv438256 13 79377405 79401111 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470612,nssv470613 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA10856,NA11829 nsv832658 13 79384981 79578222 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450374 S 95 0 1 "" nsv64327 13 79429860 79430085 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv82905 M 24 "" nsv64975 13 79579798 79579858 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv83553 M 24 "" nsv64721 13 79579829 79579882 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv83299 M 24 "" nsv522015 13 79590812 79599849 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694784 S 2026 0 1 "" nsv832660 13 79672803 79857995 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450375 S 95 1 0 "" nsv525767 13 79844324 79850613 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701935 S 2026 1 0 "" nsv832661 13 80132403 80353075 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450376 S 95 1 0 "" nsv507716 13 80339188 80345188 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623146,nssv620548 M 4 2 0 "" NA15510,NA18994 nsv455998 13 80414817 80469691 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533433 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00027 nsv1101 13 80489764 80519668 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1155 S 9 1 0 "" NA19240 nsv1102 13 80694614 80730699 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9498 S 9 0 1 "" NA18507 nsv510617 13 80704057 80709671 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622675 S 4 0 1 "" NA18994 nsv437794 13 80817203 80824046 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467675 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19154 nsv522104 13 81024756 81029297 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694876 S 2026 0 1 "" dgv115n21 13 81097552 81237360 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv525165,nsv522372 M 2026 2 0 "" nsv456000 13 81152473 81177410 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533434 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00845 nsv1103 13 81173913 81218632 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9143 S 9 0 1 "" NA12156 nsv456001 13 81218144 81248783 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533435 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00566 nsv526594 13 81228082 81248783 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702913 S 2026 0 1 "" nsv524140 13 81237495 81248783 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700018 S 2026 0 1 "" nsv520572 13 81270269 81290693 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697496 S 2026 0 1 "" nsv64728 13 81445444 81445444 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv83306 M 24 "" nsv526853 13 81984661 81989192 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703211 S 2026 1 0 "" nsv818982 13 81984661 82012600 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417432 S 112 1 0 "" NA18952 dgv235n27 13 81984661 82055207 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv456013,nsv456014 M 1557 0 2 "" NINDS_212,NINDS_227 nsv510618 13 81993861 81999372 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622676 S 4 0 1 "" NA18994 dgv576e1 13 82035430 82280653 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv371,essv24145 M 271 0 0 "" NA10847 nsv510597 13 82057484 82089459 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624343 S 4 0 0 "" NA18994 nsv528314 13 82096952 82106056 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704894 S 2026 0 1 "" nsv456016 13 82124758 82163627 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533439 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01319 nsv9090 13 82143883 82157168 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24843,nssv21355 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18860,NA18980 nsv528126 13 82213653 82254566 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704671 S 2026 0 1 "" nsv832662 13 82307672 82481757 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450377 S 95 1 0 "" nsv510353 13 82379985 82385985 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624148 S 4 0 1 "" NA18994 nsv832663 13 82411998 82576851 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450378 S 95 0 1 "" nsv510354 13 82438259 82444259 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624149,nssv622238 M 4 0 2 "" NA10860,NA18994 nsv9092 13 82512013 82524962 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26530 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19221 dgv577e1 13 82592802 82779067 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv16363,esv68 M 271 0 0 "" NA19193 nsv9093 13 82608849 82614930 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26544 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19221 nsv526635 13 82647523 82651409 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702957 S 2026 0 1 "" nsv437170 13 82680633 82694731 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467051 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA12753 nsv515815 13 82686707 82689616 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv670954,nssv686463,nssv686350,nssv664867,nssv657949,nssv673002,nssv690282,nssv676256,nssv667214,nssv687662,nssv655027,nssv676958,nssv683446,nssv669723 M 2026 0 14 "" nsv507717 13 82688419 82694419 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619116 S 4 1 0 "" NA10860 nsv524490 13 82693542 82697765 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700428 S 2026 0 1 "" nsv64427 13 82699229 82699438 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv83005 M 24 "" nsv507718 13 82724965 82730965 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619117 S 4 1 0 "" NA10860 nsv525535 13 82735155 82741223 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701670 S 2026 0 1 "" nsv528315 13 82740523 82775280 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704895 S 2026 0 1 "" nsv442322 13 82821536 82825906 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv456017 13 82832762 82919341 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533440 S 1557 0 1 "" NINDS_183 nsv519660 13 82846048 82851694 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv657455,nssv674802 M 2026 0 2 "" nsv523067 13 82953447 82960281 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698753 S 2026 0 1 "" dgv578e1 13 82956558 83175698 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv4879,esv704 M 271 0 0 "" NA18561 dgv236n27 13 82987208 83055928 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv456032,nsv456033,nsv456037,nsv456035,nsv456036,nsv456038,nsv456018,nsv456020,nsv456034 M 1557 0 9 "" HGDP00855,HGDP00859,HGDP00860,HGDP00864,HGDP00970,HGDP01044,HGDP01050,HGDP01057,HGDP01058 dgv237n27 13 82996585 83049998 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv456028,nsv456027,nsv456025,nsv456022,nsv456031,nsv456029,nsv456024,nsv456026,nsv456023,nsv456021 M 1557 0 10 "" 1780854097_A,HGDP00708,HGDP00861,HGDP00868,HGDP00869,HGDP00872,HGDP00877,HGDP01047,HGDP01056,HGDP01353 esv2751153 13 82998931 83180655 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6989932,essv6989419 M 771 0 1 "" BEC_814 nsv517663 13 83000441 83055928 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv674470,nssv652891,nssv686066,nssv678566,nssv686790,nssv661757,nssv665762,nssv692683,nssv670997,nssv652743,nssv679491,nssv676775,nssv656392,nssv656116,nssv675927,nssv682092,nssv662652,nssv670674,nssv668506,nssv678186,nssv687083,nssv680168,nssv657474,nssv653021,nssv688259,nssv660557,nssv673530 M 2026 0 27 "" esv2751154 13 83004473 83045936 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6985179,essv6985178 M 771 0 1 "" SPC_118 dgv579e1 13 83009774 83030766 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv11320,essv14044 M 271 0 0 "" NA18862,NA18863 nsv456040 13 83012727 83055928 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533462 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00751 nsv456042 13 83019164 83043271 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533463 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00889 nsv456043 13 83034857 83055928 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533464 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00856 nsv1104 13 83052395 83062654 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6569 S 9 1 0 "" NA12156 essv7488 13 83063628 83156897 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18561 nsv1105 13 83074501 83106181 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6570,nssv2045 M 9 2 0 "" NA12156,NA18555 nsv1106 13 83193218 83228544 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1156 S 9 1 0 "" NA19240 nsv526962 13 83422611 83457816 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703334 S 2026 0 1 "" nsv1107 13 83471338 83516509 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9144 S 9 0 1 "" NA12156 nsv518065 13 83495120 83522913 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695476 S 2026 0 1 "" nsv832664 13 83694716 83852394 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450379 S 95 1 0 "" nsv456045 13 83699380 83705008 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533465 S 1557 0 1 "" 1782681495_A nsv507719 13 83728526 83734526 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623147 S 4 1 0 "" NA18994 nsv832665 13 83746088 83939312 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450380 S 95 0 1 "" nsv521458 13 83800561 83884074 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698068 S 2026 1 0 "" nsv1108 13 83801857 83835483 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9499,nssv4080,nssv2046,nssv9999,nssv6571,nssv1157,nssv5484 M 9 7 0 "" NA12156,NA12878,NA18507,NA18555,NA18956,NA19129,NA19240 nsv832666 13 83926183 84091797 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450391,nssv1450385,nssv1450395,nssv1450387,nssv1450388,nssv1450384,nssv1450390,nssv1450404,nssv1450386,nssv1450393,nssv1450392,nssv1450409,nssv1450396,nssv1450381,nssv1450403,nssv1450382,nssv1450402,nssv1450408,nssv1450399,nssv1450397,nssv1450398,nssv1450401,nssv1450389,nssv1450400 M 95 24 0 "" nsv519656 13 83950478 83959029 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv685416,nssv695182,nssv658874,nssv657414 M 2026 0 4 "" nsv528529 13 84026146 84031242 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705140 S 2026 0 1 "" nsv64302 13 84083347 84083398 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv82880 M 24 "" nsv832667 13 84320788 84455378 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450410 S 95 0 1 "" nsv507720 13 84339031 84345031 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620549 S 4 1 0 "" NA15510 nsv521873 13 84410144 84412352 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694645 S 2026 0 1 "" nsv456047 13 84441154 84455108 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533466 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01416 nsv821673 13 84446447 84867020 CNV Loss Sebat_et_al_2004 15273396 ROMA Custom Nimblegen photoprint 85000 probe ROMA oligo array nssv1421248 S 31 0 1 "" nsv442323 13 84446480 84453972 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv580e1 13 84446595 84452592 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv3652,essv1068,esv1055 M 271 0 0 "" NA18990,NA18991 nsv9094 13 84465526 84470205 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24868 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18860 nsv818983 13 84502069 84514542 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417587 S 112 1 0 "" NA18972 nsv519345 13 84510389 84512475 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696803 S 2026 0 1 "" nsv456048 13 84521684 84654411 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533467 S 1557 0 1 "" NINDS_160 nsv9095 13 84590963 84604340 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24362 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18502 esv2422250 13 84616436 84869540 CNV Deletion Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161474 S 181 0 1 "" ND04946 nsv9096 13 84620747 84623122 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21018 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18564 nsv1109 13 84634437 84668241 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2904 S 9 1 0 "" NA18555 nsv64131 13 84638623 84640043 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv82709 M 24 "" nsv456049 13 84762300 84971008 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533468 S 1557 0 1 "" NINDS_182 nsv524753 13 84762300 84971008 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700744 S 2026 0 1 "" nsv456050 13 84778423 84850326 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533469 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00155 nsv456051 13 84892701 85204453 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533470 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00586 nsv510355 13 85022418 85028418 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624151 S 4 0 1 "" NA18994 nsv832668 13 85132886 85262255 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450411 S 95 1 0 "" nsv524758 13 85361136 85466585 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700749 S 2026 0 1 "" nsv818984 13 85427276 85443904 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417927 S 112 1 0 "" NA18852 nsv456054 13 85440149 85473870 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533471 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00689 nsv832669 13 85441825 85595235 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450413,nssv1450412 M 95 2 0 "" nsv527068 13 85503289 85563006 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703447 S 2026 1 0 "" esv2751155 13 85510900 85638600 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6989890,essv6983983,essv6983982,essv6989891 M 771 0 1 "" BEC_74 nsv523306 13 85516099 85526242 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699046 S 2026 0 1 "" nsv519559 13 85561923 85573760 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv656858,nssv674408 M 2026 0 2 "" nsv516701 13 85783272 85788685 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv670234,nssv672307 M 2026 0 2 "" nsv64744 13 85953194 85953498 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv83322 M 24 "" nsv456056 13 86006618 86085619 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533472 S 1557 0 1 "" 1780862355_A nsv832671 13 86337346 86505708 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450414 S 95 0 1 "" nsv517795 13 86634853 86691391 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694048 S 2026 0 1 "" nsv832672 13 86792964 86965898 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450415 S 95 0 1 "" nsv63960 13 86820749 86820807 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv82538 M 24 "" nsv818985 13 86922142 86940706 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416391,nssv1416392 M 112 0 2 "" NA18855,NA18857 dgv581e1 13 86954602 87112550 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv336,essv17786 M 271 0 0 "" NA10831 nsv519480 13 87001078 87069604 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696875 S 2026 0 1 "" nsv524508 13 87198375 87206215 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700452 S 2026 1 0 "" nsv64928 13 87224558 87224636 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv83506 M 24 "" nsv832673 13 87229111 87405320 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450416 S 95 0 1 "" nsv523153 13 87252080 87269138 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698861 S 2026 0 1 "" nsv515796 13 87268186 87269138 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv666511,nssv690035,nssv672067,nssv675928,nssv662529,nssv652131,nssv669500,nssv673473 M 2026 0 8 "" nsv64069 13 87440140 87442289 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv82647 M 24 "" nsv1111 13 87488103 87523390 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1158 S 9 1 0 "" NA19240 nsv456057 13 87669760 87778274 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533473 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00064 nsv510619 13 87813093 87816990 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618906 S 4 0 1 "" NA10860 nsv64345 13 88025030 88025030 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv82923 M 24 "" nsv1112 13 88162976 88215544 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9295 S 9 0 1 "" NA18517 nsv64648 13 88170283 88170364 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv83226 M 24 "" nsv64390 13 88170368 88170449 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv82968 M 24 "" nsv1113 13 88171370 88204968 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5485 S 9 1 0 "" NA19129 dgv582e1 13 88209082 88673975 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv5793,esv799 M 271 0 0 "" NA18566 nsv523143 13 88214498 88223143 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698850 S 2026 0 1 "" nsv9097 13 88248289 88255371 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24350 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19132 nsv1114 13 88285578 88330805 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9145 S 9 0 1 "" NA12156 esv34578 13 88313665 88620800 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6986883,essv6979537,essv6979538,essv6979539,essv6986882 M 771 1 0 "" NA18566 essv4535 13 88337416 88620754 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18566 nsv9098 13 88371823 88374540 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19295 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA10847 nsv64900 13 88372790 88372943 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv83478 M 24 "" nsv832674 13 88447147 88571585 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450417 S 95 0 1 "" essv8627 13 88476233 88642741 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19239 nsv821674 13 88510050 88578302 CNV Loss Sebat_et_al_2004 15273396 ROMA Custom Nimblegen photoprint 85000 probe ROMA oligo array nssv1421249,nssv1421250 M 31 0 2 "" nsv832675 13 88570411 88724956 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450420,nssv1450419 M 95 2 0 "" dgv583e1 13 88594137 88662594 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv6414,essv5430 M 271 0 0 "" NA18542,NA18545 nsv442324 13 88594853 88637414 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv523742 13 88615400 88628502 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699558 S 2026 0 1 "" nsv456058 13 88615400 88638240 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533474 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00955 nsv518445 13 88615400 88638240 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695883 S 2026 0 1 "" nsv818986 13 88615400 88638240 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417148 S 112 0 1 "" NA18542 nsv64058 13 88724216 88724275 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv82636 M 24 "" nsv1115 13 88725651 88759593 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4081 S 9 1 0 "" NA12878 nsv832676 13 88739213 88888425 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450421 S 95 1 0 "" nsv456059 13 89074828 89153676 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533475 S 1557 0 1 "" 1780862528_A esv2422378 13 89078620 89597586 CNV Deletion Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161245 S 181 0 1 "" ND04531 nsv1116 13 89092938 89139238 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10000,nssv2905,nssv1159 M 9 3 0 "" NA18555,NA18956,NA19240 nsv510932 13 89101900 89124422 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621622,nssv624344 M 4 0 0 "" NA15510,NA18994 nsv456060 13 89107160 89190615 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533476 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00580 nsv456064 13 89227194 89684079 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533477 S 1557 0 1 "" NINDS_165 nsv507721 13 89264122 89270122 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620550,nssv623148 M 4 2 0 "" NA15510,NA18994 nsv510356 13 89303456 89309456 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618390,nssv624152 M 4 0 2 "" CHM,NA18994 nsv64578 13 89348562 89348562 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv83156 M 24 "" nsv1117 13 89356432 89377804 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2906 S 9 1 0 "" NA18555 nsv832677 13 89485287 89646837 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450422 S 95 1 0 "" nsv433272 13 89488779 89508794 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463153 S 9 0 1 "" NA15510 nsv528839 13 89554984 89555412 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705516 S 2026 0 1 "" nsv528428 13 89554984 89559260 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705021 S 2026 0 1 "" nsv522513 13 89569738 89570618 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705882 S 2026 0 1 "" nsv510357 13 89639866 89645866 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618391 S 4 0 1 "" CHM nsv64027 13 89947410 89947410 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv82605 M 24 "" nsv526002 13 90022069 90060301 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702228 S 2026 0 1 "" dgv116n21 13 90184441 90196753 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv526357,nsv521546 M 2026 0 2 "" nsv507722 13 90459427 90465427 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617870 S 4 1 0 "" CHM nsv526854 13 90549620 90552959 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703212 S 2026 1 0 "" nsv832678 13 90569620 90730242 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450423 S 95 1 0 "" nsv1118 13 90652486 90686646 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2907 S 9 1 0 "" NA18555 nsv832679 13 90657468 90828221 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450424 S 95 1 0 "" nsv528942 13 90724397 90731783 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705633 S 2026 0 1 "" nsv1119 13 90724605 90760114 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9146 S 9 0 1 "" NA12156 nsv510620 13 90743175 90795423 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620067 S 4 0 1 "" NA15510 nsv1120 13 91170734 91198617 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5486,nssv1160 M 9 0 2 "" NA19129,NA19240 nsv527713 13 91181194 91188298 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704193 S 2026 0 1 "" nsv524271 13 91217770 91299665 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700169 S 2026 0 1 "" nsv528318 13 91373623 91405375 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704899 S 2026 0 1 "" nsv456066 13 91492582 91682371 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533478 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01027 nsv527287 13 91699927 91709497 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703701 S 2026 0 1 "" nsv518324 13 91715857 91753355 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695754 S 2026 0 1 "" nsv456068 13 91759152 91836914 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533479 S 1557 1 0 "" NINDS_55 nsv1122 13 91793670 91824308 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4082 S 9 1 0 "" NA12878 nsv832680 13 91819115 91979490 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450425 S 95 1 0 "" nsv1123 13 91855061 91889577 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2908 S 9 1 0 "" NA18555 nsv456069 13 91959847 92002428 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533480 S 1557 0 1 "" 1780862404_A nsv818987 13 91999003 92006594 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416969 S 112 0 1 "" NA19137 nsv1124 13 92040969 92087283 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6572 S 9 0 1 "" NA12156 nsv1125 13 92064542 92097535 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2048 S 9 1 0 "" NA18555 nsv521051 13 92082784 92087164 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv693350,nssv680766 M 2026 0 2 "" nsv526003 13 92194656 92201784 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702229 S 2026 0 1 "" nsv456072 13 92217363 92304865 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533481 S 1557 0 1 "" NINDS_156 nsv1126 13 92329459 92330538 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4083 S 9 1 0 "" NA12878 nsv522221 13 92336058 92339485 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694998 S 2026 0 1 "" nsv515697 13 92339485 92347342 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv671172,nssv658945,nssv655856,nssv664452,nssv672562 M 2026 0 5 "" nsv1127 13 92408548 92420068 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10001 S 9 1 0 "" NA18956 dgv117n21 13 92498676 92511121 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv519671,nsv526346 M 2026 2 0 "" nsv832682 13 92498862 92672802 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450426 S 95 0 1 "" nsv1128 13 92502487 92536627 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9147 S 9 1 0 "" NA12156 nsv507723 13 92522053 92528053 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617871,nssv623149 M 4 2 0 "" CHM,NA18994 dgv238n27 13 92614294 92640400 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv456075,nsv456073 M 1557 2 0 "" HGDP00025,HGDP00037 nsv456076 13 92614294 92651930 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533485 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00218 nsv64659 13 92681569 92681654 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv83237 M 24 "" esv2751156 13 92711000 92786639 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6981802,essv6981801,essv6989263,essv6989519 M 771 0 1 "" BEC_48 nsv507724 13 92847121 92853121 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619118 S 4 1 0 "" NA10860 nsv523214 13 92919686 92924826 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698935 S 2026 0 1 "" nsv818989 13 92919686 92927597 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417928 S 112 1 0 "" NA18852 dgv584e1 13 92972655 93146180 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv429,essv22639 M 271 0 0 "" NA12752 nsv832683 13 93005803 93168927 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450428,nssv1450427,nssv1450430 M 95 1 2 "" nsv1129 13 93054726 93081018 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9148 S 9 0 1 "" NA12156 nsv832684 13 93177508 93348854 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450431,nssv1450433,nssv1450432 M 95 0 3 "" nsv64776 13 93190429 93190526 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv83354 M 24 "" nsv1130 13 93208850 93253629 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9149 S 9 0 1 "" NA12156 nsv507725 13 93268100 93274100 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619119,nssv623150 M 4 2 0 "" NA10860,NA18994 nsv526048 13 93565312 93678220 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702285 S 2026 0 1 "" nsv1131 13 93750891 93783925 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9150 S 9 1 0 "" NA12156 nsv1133 13 93906444 93940001 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1161 S 9 1 0 "" NA19240 nsv528812 13 93940068 93940835 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705486 S 2026 0 1 "" nsv832685 13 93977677 94077967 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450434 S 95 1 0 "" nsv832686 13 94004743 94198993 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450435 S 95 1 0 "" nsv832687 13 94210812 94380162 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450436 S 95 1 0 "" nsv7246 13 94428861 97952419 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9500 S 9 0 0 "" NA18507 nsv832688 13 94431194 94578199 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450437 S 95 1 0 "" nsv510358 13 94431496 94437496 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621405,nssv624153,nssv622239,nssv618392 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv525194 13 94470951 94535193 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701275 S 2026 0 1 "" nsv832689 13 94557074 94719309 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450438 S 95 0 1 "" nsv522179 13 94686105 94690357 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694952 S 2026 0 1 "" nsv456078 13 94727889 94770497 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533486 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00720 nsv517610 13 94729993 94833884 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv669110,nssv652505,nssv679151,nssv661348,nssv663849,nssv690627,nssv687983,nssv693373,nssv687984,nssv701105,nssv669109,nssv671542 M 2026 7 5 "" nsv456080 13 94741886 94813130 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533487 S 1557 1 0 "" NINDS_205 nsv456082 13 94790980 94825508 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533488 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01179 nsv525525 13 94798750 94845071 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701660 S 2026 1 0 "" nsv1134 13 94805858 94828927 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1163 S 9 0 1 "" NA19240 nsv524855 13 94833884 94845925 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700858 S 2026 0 1 "" nsv525760 13 94974035 94984576 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701928 S 2026 0 1 "" nsv832690 13 95128758 95306078 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450439,nssv1450441 M 95 1 1 "" nsv507726 13 95187959 95193959 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623151 S 4 1 0 "" NA18994 nsv832691 13 95276099 95457824 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450443,nssv1450442 M 95 0 2 "" nsv527566 13 95283610 95295071 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704027 S 2026 0 1 "" nsv519575 13 95335275 95338205 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696929 S 2026 0 1 "" nsv1135 13 95398634 95431437 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6573 S 9 1 0 "" NA12156 nsv64173 13 95431424 95431741 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv82751 M 24 "" nsv507727 13 95609247 95615247 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617872,nssv620551,nssv619120 M 4 3 0 "" CHM,NA10860,NA15510 nsv1136 13 95690692 95735796 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9151 S 9 0 1 "" NA12156 nsv521410 13 95703618 95706723 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698020 S 2026 0 1 "" nsv519951 13 95720192 95721516 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv687171,nssv659607,nssv676172,nssv690441 M 2026 0 4 "" nsv522493 13 95883420 95982289 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705861 S 2026 0 1 "" nsv517907 13 96135248 96190221 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694059 S 2026 0 1 "" nsv516784 13 96238572 96247322 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv670834,nssv677384,nssv689079,nssv691535 M 2026 2 2 "" nsv832693 13 96392846 96575482 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450444 S 95 0 1 "" nsv1137 13 96601475 96646815 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6574 S 9 0 1 "" NA12156 nsv832694 13 96728562 96935883 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450445 S 95 1 0 "" nsv1138 13 96787890 96821603 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9152 S 9 1 0 "" NA12156 nsv1139 13 96931794 96976131 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2049 S 9 0 1 "" NA18555 nsv438257 13 96975940 96976926 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470615,nssv470614 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA19201,NA19202 nsv64612 13 97021979 97021979 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv83190 M 24 "" nsv1140 13 97031231 97076198 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9153 S 9 0 1 "" NA12156 nsv518191 13 97112333 97113282 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695614 S 2026 0 1 "" nsv520380 13 97321467 97330758 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697382 S 2026 0 1 "" nsv456084 13 97325440 97339220 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533489 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00882 nsv818990 13 97328242 97330758 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416093,nssv1418400,nssv1416095,nssv1416186,nssv1415787 M 112 0 5 "" NA12239,NA12801,NA12812,NA12874,NA12892 nsv516118 13 97328242 97334864 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv689451,nssv680552,nssv689787,nssv682257,nssv655991,nssv653818,nssv680643,nssv675107,nssv673277,nssv655230,nssv688001,nssv658472,nssv670199,nssv672982,nssv677188,nssv668098,nssv668699,nssv661100,nssv669706,nssv665664,nssv691829,nssv685903,nssv668129,nssv683739,nssv654423,nssv692253,nssv660751,nssv693351,nssv676655,nssv656457,nssv655028,nssv659818,nssv673502,nssv677446,nssv691937,nssv671393,nssv662598,nssv670552,nssv668420,nssv669401,nssv652519 M 2026 0 41 "" nsv523423 13 97365641 97367376 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699177 S 2026 0 1 "" esv2751157 13 97539314 97597584 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6989821,essv6983585 M 771 0 1 "" BEC_670 nsv437171 13 97551462 97560454 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467052 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA07048 nsv456086 13 97553495 97569539 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533491 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01254 nsv456087 13 97676809 97712694 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533492 S 1557 0 1 "" 1780862093_A nsv528803 13 97686627 97720817 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705477 S 2026 0 1 "" nsv818991 13 97711062 97740231 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417930,nssv1417929 M 112 0 2 "" NA18852,NA18854 esv34957 13 97712694 97740200 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6988258,essv6979861 M 771 0 1 "" NA18854 dgv585e1 13 97712694 97753390 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1193,essv8497 M 271 0 0 "" NA18854 nsv456088 13 97753790 98006567 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533493 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01081 nsv510359 13 97757744 97763744 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618393,nssv621406,nssv624154 M 4 0 3 "" CHM,NA15510,NA18994 nsv832695 13 97838041 98032793 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450446 S 95 0 1 "" nsv509511 13 97864194 97942718 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619636 S 4 1 0 "" NA10860 nsv517409 13 97887157 97913518 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv689645,nssv651934,nssv688464,nssv696029,nssv668306,nssv655062,nssv679894,nssv659415,nssv701177,nssv675599,nssv694284 M 2026 1 10 "" nsv1141 13 97906454 97939142 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1164 S 9 1 0 "" NA19240 nsv456089 13 97967428 98046312 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533494 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01287 nsv1142 13 97976560 98011074 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1165 S 9 1 0 "" NA19240 nsv1144 13 98029663 98062754 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4084,nssv2050 M 9 0 2 "" NA12878,NA18555 nsv510621 13 98030700 98075425 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620068,nssv622677 M 4 0 2 "" NA15510,NA18994 nsv527303 13 98064782 98117502 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703721 S 2026 0 1 "" nsv64073 13 98104160 98104222 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv82651 M 24 "" nsv518082 13 98115514 98134291 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695495 S 2026 1 0 "" nsv456091 13 98572725 98627312 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533495 S 1557 0 1 "" 1780862015_A nsv523519 13 98693966 98708323 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699292 S 2026 0 1 "" nsv521902 13 98781320 98787539 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694673 S 2026 0 1 "" nsv1145 13 98849297 98865234 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2909 S 9 1 0 "" NA18555 nsv456092 13 98871666 98891132 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533496 S 1557 0 1 "" 1780854483_A nsv527215 13 98890004 98891132 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703615 S 2026 0 1 "" nsv510934 13 98979560 99013258 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621623 S 4 0 0 "" NA15510 nsv528508 13 99022296 99022644 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705115 S 2026 0 1 "" nsv519296 13 99025469 99027477 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv656247,nssv655231,nssv672655 M 2026 0 3 "" nsv832696 13 99117594 99280237 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450447 S 95 1 0 "" nsv510360 13 99238422 99244422 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622240 S 4 0 1 "" NA10860 nsv821675 13 99240885 99282297 CNV Loss Sebat_et_al_2004 15273396 ROMA Custom Nimblegen photoprint 85000 probe ROMA oligo array nssv1421251 S 31 0 1 "" nsv832697 13 99386509 99560047 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450448 S 95 0 1 "" nsv510622 13 99392591 99489866 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622678 S 4 0 1 "" NA18994 nsv456093 13 99415306 99464634 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533497 S 1557 0 1 "" 1780862100_A nsv1146 13 99423956 99468838 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9154 S 9 0 1 "" NA12156 nsv509512 13 99489866 99559875 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620991,nssv619637 M 4 2 0 "" NA10860,NA15510 nsv832698 13 99518944 99688890 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450449 S 95 0 1 "" nsv526668 13 99603798 99610856 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702998 S 2026 1 0 "" nsv7247 13 99738307 100312195 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10002 S 9 0 0 "" NA18956 nsv523329 13 99807455 99834029 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699073 S 2026 0 1 "" nsv518301 13 99814518 99817629 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695732 S 2026 0 1 "" nsv507728 13 99911888 99917888 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620552 S 4 1 0 "" NA15510 nsv507729 13 99965038 99971038 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623153 S 4 1 0 "" NA18994 nsv522365 13 100057428 100057953 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695145 S 2026 0 1 "" nsv1147 13 100129433 100174367 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9155 S 9 0 1 "" NA12156 nsv1148 13 100141809 100176450 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1166 S 9 1 0 "" NA19240 nsv456094 13 100347259 100368000 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533498 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00662 nsv456095 13 100350235 100363004 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533499 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01027 nsv832699 13 100402034 100593232 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450452,nssv1450450 M 95 2 0 "" nsv524376 13 100413432 100461958 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700289 S 2026 1 0 "" nsv1149 13 100492807 100537601 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9156 S 9 0 1 "" NA12156 nsv1150 13 100619031 100653125 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4086 S 9 1 0 "" NA12878 nsv64877 13 100692145 100694425 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv83455 M 24 "" nsv832700 13 100717786 100874219 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450453 S 95 1 0 "" nsv528744 13 100784846 100785048 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705405 S 2026 0 1 "" nsv519642 13 100862974 100869572 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696968 S 2026 0 1 "" nsv516078 13 100865354 100869572 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv666045,nssv681117 M 2026 0 2 "" nsv832701 13 100895774 101064357 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450454 S 95 0 1 "" nsv523777 13 100973899 100974245 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699600 S 2026 0 1 "" nsv510361 13 101055092 101061092 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622241,nssv618394 M 4 0 2 "" CHM,NA10860 nsv521536 13 101065425 101122218 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698152 S 2026 0 1 "" nsv832702 13 101072062 101245563 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450455 S 95 1 0 "" nsv1151 13 101136006 101169566 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5487 S 9 1 0 "" NA19129 nsv456097 13 101140742 101147035 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533501 S 1557 0 1 "" NINDS_45 nsv525759 13 101167264 101168511 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701927 S 2026 1 0 "" nsv832704 13 101362990 101508412 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450456 S 95 1 0 "" nsv1152 13 101423377 101456499 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5488 S 9 1 0 "" NA19129 nsv832705 13 101429291 101603301 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450457,nssv1450459,nssv1450458 M 95 3 0 "" nsv1153 13 101440831 101486522 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6575 S 9 0 1 "" NA12156 esv34672 13 101452130 101465763 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6987372,essv6978314 M 771 0 1 "" NA19000 nsv456098 13 101456654 101517230 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533502 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00356 dgv586e1 13 101459508 101483261 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2762,esv1233 M 271 0 0 "" NA19000 nsv832706 13 101581970 101741814 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450460 S 95 1 0 "" nsv1155 13 101604241 101639324 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4087 S 9 1 0 "" NA12878 nsv63965 13 101611917 101612033 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv82543 M 24 "" nsv507730 13 101669312 101675312 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623154 S 4 1 0 "" NA18994 nsv524907 13 101738207 101741851 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700918 S 2026 0 1 "" nsv527169 13 101917220 101917288 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703563 S 2026 0 1 "" nsv524419 13 101933444 101939251 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700345 S 2026 0 1 "" nsv1156 13 101991750 102037034 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9157 S 9 0 1 "" NA12156 nsv1157 13 102134682 102169332 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4088,nssv9955 M 9 2 0 "" NA12878,NA18507 nsv519661 13 102141429 102142610 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696978 S 2026 0 1 "" nsv524532 13 102148565 102150761 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700482 S 2026 0 1 "" nsv522820 13 102148565 102152914 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698469 S 2026 0 1 "" nsv523760 13 102152057 102152914 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699580 S 2026 0 1 "" nsv519731 13 102398190 102400495 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv657986,nssv684641,nssv679581 M 2026 0 3 "" nsv520526 13 102398190 102404830 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697469 S 2026 0 1 "" nsv818992 13 102483067 102495729 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415863 S 112 1 0 "" NA11993 nsv523242 13 102483067 102500665 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698970 S 2026 1 0 "" nsv1158 13 102502451 102539884 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9158 S 9 0 1 "" NA12156 nsv1159 13 102556419 102590404 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9159 S 9 1 0 "" NA12156 nsv1160 13 102680747 102706074 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2051 S 9 1 0 "" NA18555 nsv507731 13 102713063 102719063 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623155,nssv617873,nssv619121,nssv620553 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv64805 13 102729654 102729968 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv83383 M 24 "" nsv456099 13 102733219 102935963 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533503 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00738 nsv64087 13 102807856 102808174 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv82665 M 24 "" nsv528665 13 102809878 102830398 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705303 S 2026 0 1 "" nsv818993 13 102824275 102836403 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415594,nssv1415596 M 112 0 2 "" NA10830,NA12154 nsv64346 13 102889767 102890248 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv82924 M 24 "" nsv527774 13 102902377 102966614 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704264 S 2026 1 0 "" nsv522220 13 102927933 103206029 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694997 S 2026 0 1 "" nsv64650 13 103006809 103006809 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv83228 M 24 "" dgv587e1 13 103073528 103077233 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv6534,essv6792 M 271 0 0 "" NA18594,NA18611 dgv588e1 13 103073528 103079107 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1685,essv1571,essv3595,esv958 M 271 0 0 "" NA18969,NA18992,NA18997 nsv9099 13 103074622 103077364 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19309 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18572 nsv442677 13 103074861 103076411 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" essv2560 13 103075333 103079107 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18974 nsv1161 13 103088293 103119713 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2052 S 9 1 0 "" NA18555 nsv526054 13 103143536 103150253 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702291 S 2026 0 1 "" nsv523518 13 103143536 103155023 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699291 S 2026 0 1 "" esv34417 13 103201000 103223000 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6990287,essv6978805 M 771 1 0 "" NA12707 dgv589e1 13 103201047 103222979 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv892,essv24949 M 271 0 0 "" NA12707 nsv832707 13 103215124 103415580 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450461 S 95 1 0 "" dgv118n21 13 103326843 103329369 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv522528,nsv523710 M 2026 0 2 "" nsv1162 13 103372502 103416954 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4632 S 9 0 1 "" NA19129 nsv523203 13 103395052 103407780 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698923 S 2026 0 1 "" nsv64301 13 103681093 103681819 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv82879 M 24 "" nsv1163 13 103769570 103780981 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9160 S 9 0 1 "" NA12156 dgv590e1 13 103783832 103787454 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1231,essv7642 M 271 0 0 "" NA18632 nsv9100 13 103788903 103790507 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20012 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA07029 nsv521724 13 103817940 103820221 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694484 S 2026 0 1 "" nsv520159 13 103829770 103834862 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697254 S 2026 0 1 "" nsv524080 13 103924217 103953143 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699949 S 2026 1 0 "" nsv64430 13 103929185 103929185 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv83008 M 24 "" nsv64995 13 103975944 103975944 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv83573 M 24 "" nsv1164 13 104197356 104242275 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9161 S 9 0 1 "" NA12156 nsv526744 13 104222547 104245314 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703088 S 2026 0 1 "" nsv456100 13 104222547 104249902 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533504 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01364 nsv832708 13 104225552 104393088 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450463 S 95 0 1 "" nsv832709 13 104276349 104322709 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450464 S 95 0 1 "" nsv510362 13 104400567 104406567 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624155 S 4 0 1 "" NA18994 dgv591e1 13 104418323 104585016 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv20343,esv795 M 271 0 0 "" NA12236 nsv818994 13 104466548 104537409 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415597 S 112 1 0 "" NA12236 essv19716 13 104466931 104540789 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12236 esv34774 13 104466931 104545000 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6978765,essv6978764,essv6978763,essv6986699 M 771 1 0 "" NA12236 nsv9101 13 104532375 104545329 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20816 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19007 nsv456101 13 104576218 104635900 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533505 S 1557 1 0 "" 1780862085_A nsv9104 13 104579321 104581744 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24364 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18517 nsv520637 13 104626627 104635900 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697531 S 2026 0 1 "" nsv1166 13 104642519 104674866 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2053 S 9 1 0 "" NA18555 nsv520687 13 104643603 104652441 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv674081,nssv679274 M 2026 0 2 "" nsv520752 13 104725948 104727263 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv684861,nssv674999 M 2026 0 2 "" nsv516195 13 104752139 104753643 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv668612,nssv674363,nssv657548,nssv691621,nssv676194,nssv661977,nssv676254,nssv675403,nssv682837,nssv681925,nssv693777,nssv666714,nssv690528 M 2026 0 13 "" nsv1167 13 104768511 104801832 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1167 S 9 1 0 "" NA19240 nsv519018 13 104917447 104924309 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696488 S 2026 0 1 "" nsv1168 13 104949379 104983582 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2910 S 9 1 0 "" NA18555 nsv524222 13 104954707 104995067 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700110 S 2026 0 1 "" dgv239n27 13 105031002 105105350 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv456109,nsv456104,nsv456106,nsv456102,nsv456103,nsv456105 M 1557 0 6 "" HGDP00862,HGDP00868,HGDP01001,HGDP01003,HGDP01012,HGDP01015 nsv1169 13 105186099 105253616 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9297 S 9 0 1 "" NA18517 nsv525061 13 105199403 105202838 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701113 S 2026 0 1 "" nsv832710 13 105217625 105382007 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450465,nssv1450466 M 95 0 2 "" nsv516513 13 105289737 105295988 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv673920,nssv668772 M 2026 0 2 "" nsv64251 13 105290834 105294539 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv82829 M 24 "" nsv1170 13 105343797 105379132 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4089 S 9 1 0 "" NA12878 nsv521889 13 105578098 105579259 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694661 S 2026 0 1 "" nsv1171 13 105687161 105701370 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2054 S 9 0 1 "" NA18555 nsv522082 13 105711482 105714789 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694856 S 2026 0 1 "" nsv1172 13 106011236 106045070 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1168 S 9 1 0 "" NA19240 nsv518553 13 106027799 106037715 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695996 S 2026 1 0 "" nsv832711 13 106115854 106278034 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450467 S 95 1 0 "" nsv524956 13 106184121 107025880 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700977 S 2026 1 0 "" nsv1173 13 106209566 106251835 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2911,nssv4090,nssv10003,nssv9162 M 9 4 0 "" NA12156,NA12878,NA18555,NA18956 nsv509514 13 106211061 106249101 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623651,nssv620993,nssv619638 M 4 3 0 "" NA10860,NA15510,NA18994 nsv832712 13 106278038 106454994 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450469,nssv1450468 M 95 0 2 "" nsv510363 13 106404598 106410598 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618395,nssv622242 M 4 0 2 "" CHM,NA10860 nsv1174 13 106415066 106448745 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9163 S 9 1 0 "" NA12156 nsv1175 13 106483907 106498590 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10004 S 9 1 0 "" NA18956 nsv528262 13 106669967 106696750 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704829 S 2026 1 0 "" nsv510623 13 106703436 106780731 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618907 S 4 0 1 "" NA10860 esv2751127 13 106799000 106871000 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6989715,essv6982996,essv6989338 M 771 0 1 "" BEC_532 nsv64265 13 106853568 106861650 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv82843 M 24 "" nsv527392 13 106960600 106990121 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703827 S 2026 1 0 "" nsv832713 13 106964760 107138743 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450470 S 95 1 0 "" nsv519927 13 107031742 107046046 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697131 S 2026 1 0 "" nsv510364 13 107059736 107065736 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624156 S 4 0 1 "" NA18994 dgv592e1 13 107090320 107274703 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv7859,esv515,essv7706,essv12613 M 271 0 0 "" NA18500,NA18558,NA18633 essv6053 13 107093227 107130924 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18603 nsv516705 13 107214682 107215219 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv670281,nssv678937 M 2026 0 2 "" nsv456110 13 107267825 107280986 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533514 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00964 nsv832715 13 107309198 107481871 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450471,nssv1450472,nssv1450475,nssv1450474 M 95 0 4 "" nsv526646 13 107423939 107431712 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702972 S 2026 0 1 "" nsv523829 13 107458063 107469565 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699660 S 2026 0 1 "" nsv1177 13 107471848 107505402 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1169 S 9 1 0 "" NA19240 nsv507732 13 107506813 107512813 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623156,nssv619122 M 4 2 0 "" NA10860,NA18994 nsv520624 13 107530553 107547068 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv686804,nssv673304 M 2026 0 2 "" nsv510365 13 107540375 107546375 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621407 S 4 0 1 "" NA15510 nsv63970 13 107566406 107566406 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv82548 M 24 "" nsv522687 13 107612825 107616886 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv706097 S 2026 0 1 "" nsv521685 13 107630437 107631285 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698305 S 2026 0 1 "" nsv510624 13 107732871 107757838 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617410,nssv618908 M 4 0 2 "" CHM,NA10860 nsv526850 13 107737706 107741035 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703208 S 2026 1 0 "" dgv119n21 13 107782011 107789674 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv519175,nsv527316 M 2026 0 2 "" nsv832716 13 107875490 108044958 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450478,nssv1450476,nssv1450477 M 95 0 3 "" nsv520463 13 107895041 107898025 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv671667,nssv691641 M 2026 0 2 "" nsv518060 13 108037834 108038578 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695471 S 2026 0 1 "" nsv1178 13 108064532 108097993 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1170 S 9 1 0 "" NA19240 nsv509515 13 108125773 108147914 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623652 S 4 1 0 "" NA18994 nsv1179 13 108127879 108161338 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2055,nssv4091,nssv1171 M 9 3 0 "" NA12878,NA18555,NA19240 nsv9105 13 108337567 108341665 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21645 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18537 nsv9106 13 108361324 108365802 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21244 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA10839 nsv832717 13 108424717 108588641 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450479 S 95 0 1 "" nsv64924 13 108458972 108459023 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv83502 M 24 "" nsv525337 13 108462557 108474724 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701455 S 2026 0 1 "" nsv832718 13 108526684 108700023 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450480 S 95 1 0 "" nsv510366 13 108617555 108623555 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621408 S 4 0 1 "" NA15510 nsv518003 13 108709716 108715363 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695415 S 2026 0 1 "" dgv593e1 13 108719614 109007551 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv12350,essv15593,esv328,essv6296 M 271 0 0 "" NA18609,NA19137,NA19138 nsv1180 13 108848596 108869201 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9164 S 9 0 1 "" NA12156 nsv64836 13 109011168 109011221 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv83414 M 24 "" nsv64808 13 109011230 109011283 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv83386 M 24 "" nsv9107 13 109159511 109161459 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21385 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18980 nsv1181 13 109166304 109201140 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1172 S 9 1 0 "" NA19240 nsv526943 13 109191478 109219885 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703313 S 2026 0 1 "" nsv9108 13 109215230 109219997 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19552,nssv21587,nssv20853,nssv23649,nssv23491,nssv20042,nssv19339,nssv24388,nssv24376,nssv26588,nssv20544,nssv18820,nssv19325,nssv21675,nssv19151,nssv21110,nssv21274,nssv20646,nssv20846 M 31 7 12 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10847,NA10863,NA12802,NA12872,NA18502,NA18504,NA18537,NA18563,NA18572,NA18853,NA18942,NA18975,NA19007,NA19132,NA19221,NA19240 nsv818995 13 109219452 109220392 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416791 S 112 1 0 "" NA19159 nsv832719 13 109310260 109453884 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450481 S 95 0 1 "" esv32627 13 109313212 109322580 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv94483 S 51 0 1 "" 21932 nsv442325 13 109471611 109473200 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv240n27 13 109540198 109559522 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv456112,nsv456114,nsv456111,nsv456113 M 1557 0 4 "" 1780862195_A,1780862424_A,NINDS_149,NINDS_166 nsv515849 13 109540198 109559522 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv668304,nssv684798,nssv665009,nssv680613,nssv671104,nssv681213,nssv681276,nssv671868 M 2026 0 8 "" nsv456115 13 109554665 109604491 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533519 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01303 nsv520696 13 109616599 109617855 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697562 S 2026 0 1 "" nsv1182 13 109627692 109673030 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6577 S 9 0 1 "" NA12156 dgv241n27 13 109640154 109650221 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv456118,nsv456117 M 1557 0 2 "" HGDP00857,HGDP00868 nsv64357 13 109670084 109670213 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv82935 M 24 "" nsv521901 13 109693996 109695445 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694672 S 2026 0 1 "" nsv523051 13 109749316 109764350 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698734 S 2026 0 1 "" esv2751128 13 109838799 109930491 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6981495,essv6987972,essv6981493,essv6981494,essv6981496 M 771 0 1 "" BEC_280 nsv509516 13 109879989 109985527 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619639 S 4 1 0 "" NA10860 nsv832720 13 109898236 110093994 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450482 S 95 0 1 "" nsv64022 13 109943493 109943560 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv82600 M 24 "" nsv519056 13 110038470 110048044 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694302 S 2026 0 1 "" nsv525124 13 110059268 110078003 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701192 S 2026 0 1 "" nsv456120 13 110078003 110107618 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533523 S 1557 0 1 "" NINDS_111 nsv519282 13 110141889 110158586 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696764 S 2026 0 1 "" nsv518808 13 110249709 110251585 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696262 S 2026 0 1 "" nsv64622 13 110378890 110378890 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv83200 M 24 "" nsv456121 13 110381423 110458114 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533524 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00977 nsv1183 13 110386795 110421132 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2912 S 9 1 0 "" NA18555 dgv594e1 13 110460034 110604912 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv20853,essv24719,esv861 M 271 0 0 "" NA11829 esv2751129 13 110462708 110569878 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6987708,essv6984899,essv6984900,essv6984901 M 771 1 0 "" SPC_192 dgv242n27 13 110475430 110547117 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv456124,nsv456123 M 1557 2 0 "" 1780854058_A,1798860569_A nsv516588 13 110475430 110547117 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705960,nssv678880,nssv669400,nssv678998,nssv689839 M 2026 4 1 "" esv34372 13 110478211 110549062 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6990192,essv6978070 M 771 1 0 "" NA11829 nsv9109 13 110501819 110509592 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21617,nssv21048,nssv20876,nssv21908,nssv24640,nssv21879,nssv20956,nssv20676,nssv21967,nssv19181,nssv20102,nssv21475,nssv21304,nssv22558,nssv20574,nssv21749,nssv21705,nssv23519,nssv24390 M 31 4 15 Samples from several populations that are part of the HapMap project. "" NA07029,NA10839,NA10863,NA11830,NA12155,NA12740,NA12872,NA18504,NA18517,NA18537,NA18552,NA18563,NA18564,NA18972,NA18975,NA18980,NA19007,NA19144,NA19173 nsv507733 13 110534972 110540972 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623158 S 4 1 0 "" NA18994 nsv1184 13 110536570 110563232 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4092 S 9 1 0 "" NA12878 nsv1185 13 110545969 110577972 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9165 S 9 0 1 "" NA12156 esv32604 13 110590449 110607412 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97115 S 51 0 1 "" 22075 nsv1186 13 110675758 110720615 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9166 S 9 0 1 "" NA12156 nsv64702 13 110776674 110776674 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv83280 M 24 "" dgv120n21 13 110783259 110789285 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv527048,nsv516543 M 2026 0 3 "" nsv518673 13 110783937 110789285 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696123 S 2026 1 0 "" dgv595e1 13 110872855 111151995 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv15054,esv162 M 271 0 0 "" NA19129 nsv527335 13 110941191 110942174 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703761 S 2026 0 1 "" nsv832721 13 111024790 111149355 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450485,nssv1450483 M 95 0 2 "" nsv64592 13 111145111 111145160 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv83170 M 24 "" nsv64098 13 111621108 111621165 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv82676 M 24 "" nsv524691 13 111642167 111643475 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700666 S 2026 0 1 "" nsv456128 13 111682066 111848615 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533527 S 1557 0 1 "" 1780862444_A nsv832722 13 111758242 111949607 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450486 S 95 0 1 "" nsv507734 13 111869846 111875846 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620554,nssv617874,nssv623159 M 4 3 0 "" CHM,NA15510,NA18994 nsv64567 13 111871889 111871889 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv83145 M 24 "" nsv526460 13 111884656 111889281 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702763 S 2026 0 1 "" nsv1189 13 111955357 112047008 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10006,nssv9298,nssv4093,nssv2056,nssv6579 M 9 0 5 "" NA12156,NA12878,NA18517,NA18555,NA18956 nsv509517 13 111972230 112027072 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619640,nssv620994 M 4 2 0 "" NA10860,NA15510 nsv510625 13 111972230 112027072 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622679 S 4 0 1 "" NA18994 nsv511026 13 111972230 112057344 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618672 S 4 0 0 "" CHM nsv1190 13 111973036 111997393 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1173,nssv2057,nssv6578,nssv10005 M 9 4 0 "" NA12156,NA18555,NA18956,NA19240 nsv64978 13 111981589 111981996 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv83556 M 24 "" nsv64843 13 112010020 112010155 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv83421 M 24 "" nsv1191 13 112011370 112012860 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4094 S 9 1 0 "" NA12878 nsv517711 13 112154490 112157732 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv652925,nssv693281 M 2026 0 2 "" nsv64288 13 112325844 112325844 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv82866 M 24 "" nsv521686 13 112358548 112372325 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698306 S 2026 1 0 "" nsv518792 13 112381685 112487587 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696245 S 2026 0 1 "" dgv596e1 13 112424858 112739202 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv14892,essv8842,essv14367,essv10254,essv9097,essv9193,essv14793,essv15511,esv179,essv12529,essv11700,essv12973,essv13471,essv9151,essv10165,essv9738,essv16203,essv10792,essv11789,essv10293 M 271 0 0 "" NA18504,NA18505,NA18506,NA18508,NA18522,NA18523,NA18859,NA18860,NA18913,NA19128,NA19130,NA19132,NA19152,NA19154,NA19159,NA19161,NA19192,NA19194,NA19207 nsv64365 13 112490143 112490254 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv82943 M 24 "" nsv64969 13 112492342 112492437 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv83547 M 24 "" nsv1192 13 112498172 112531502 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1174 S 9 1 0 "" NA19240 nsv64912 13 112547500 112547594 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv83490 M 24 "" nsv832723 13 112550821 112746773 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450488,nssv1450487 M 95 0 2 "" nsv524253 13 112560332 112587895 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700149 S 2026 0 1 "" nsv1193 13 112561946 112595883 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9168 S 9 1 0 "" NA12156 nsv64453 13 112566069 112567311 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv83031 M 24 "" essv1950 13 112568275 112739202 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18959 nsv509518 13 112573679 112621843 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619641 S 4 1 0 "" NA10860 nsv64496 13 112575349 112575497 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv83074 M 24 "" nsv9110 13 112581214 112585157 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23677 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19240 nsv64155 13 112597190 112597254 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv82733 M 24 "" nsv509519 13 112627410 112801899 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619642,nssv623653 M 4 2 0 "" NA10860,NA18994 nsv518044 13 112707109 112913337 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695455 S 2026 1 0 "" nsv9111 13 112713274 112720950 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20604,nssv20883,nssv19582,nssv21108,nssv24402,nssv21997 M 31 0 6 Samples from several populations that are part of the HapMap project. "" NA07048,NA11830,NA18564,NA18942,NA18975,NA19132 nsv832724 13 112775902 112852253 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450490,nssv1450491,nssv1450489 M 95 0 3 "" nsv519639 13 112776346 112784544 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv674714,nssv657313,nssv683047,nssv700175 M 2026 0 4 "" nsv64645 13 112782417 112782576 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv83223 M 24 "" nsv818996 13 112790596 112828042 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417710 S 112 1 0 "" NA18999 nsv64704 13 112814875 112815362 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv83282 M 24 "" nsv509520 13 112921520 112960122 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623654 S 4 1 0 "" NA18994 nsv1194 13 112941092 112973900 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6580 S 9 1 0 "" NA12156 nsv509521 13 113011276 113096796 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623655,nssv619643 M 4 2 0 "" NA10860,NA18994 nsv64974 13 113034640 113034640 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv83552 M 24 "" nsv9112 13 113077224 113094346 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24666,nssv18850,nssv24923,nssv20906,nssv19612,nssv21505,nssv26602,nssv21909,nssv23547,nssv20913,nssv23735,nssv21140,nssv20132,nssv20634,nssv21735,nssv19369,nssv20706,nssv24416,nssv21809,nssv21138,nssv24414,nssv19355,nssv21647,nssv22588,nssv19211,nssv24428,nssv22027 M 31 27 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10847,NA10863,NA11830,NA12740,NA12802,NA12872,NA18502,NA18504,NA18517,NA18537,NA18563,NA18564,NA18572,NA18853,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19144,NA19173,NA19221,NA19240 dgv597e1 13 113086430 113259065 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv23919,esv210 M 271 0 0 "" NA12814 nsv1195 13 113095900 113129559 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4096 S 9 1 0 "" NA12878 nsv9113 13 113097958 113102832 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20943 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA07048 nsv9115 13 113105623 113118136 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26615 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19221 nsv509522 13 113110997 113134389 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623656,nssv619644,nssv620995 M 4 3 0 "" NA10860,NA15510,NA18994 nsv9116 13 113136514 113149027 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26628 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19221 nsv64762 13 113137468 113137635 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv83340 M 24 "" nsv64447 13 113138644 113138979 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv83025 M 24 "" nsv64502 13 113149278 113149458 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv83080 M 24 "" nsv456137 13 113154699 113179955 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533529 S 1557 0 1 "" 1780862304_A nsv64189 13 113260142 113260261 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv82767 M 24 "" nsv832726 13 113261409 113365404 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450494,nssv1450493,nssv1450492 M 95 0 3 "" nsv509523 13 113273289 113328685 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619645 S 4 1 0 "" NA10860 nsv832727 13 113492713 113658045 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450496 S 95 0 1 "" esv33489 13 113497396 113501832 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100852,essv97216 M 51 2 0 "" 21656,22075 nsv511027 13 113505090 113575028 OTHER Inversion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624345,nssv622401,nssv621625 M 4 0 0 "" NA10860,NA15510,NA18994 nsv522907 13 113535832 113538172 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698566 S 2026 0 1 "" nsv64295 13 113606186 113606186 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv82873 M 24 "" nsv64170 13 113607083 113607083 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv82748 M 24 "" nsv518916 13 113759040 113835170 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696376 S 2026 0 1 "" dgv121n21 13 113759040 113948297 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv527299,nsv524254 M 2026 0 2 "" nsv64982 13 113771746 113771823 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv83560 M 24 "" nsv1196 13 113795051 113818598 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9501 S 9 1 0 "" NA18507 nsv64415 13 113813924 113814013 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv82993 M 24 "" nsv438258 13 113851980 113853018 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470620,nssv470619,nssv470616,nssv470617 M 269 0 4 Samples from several populations that are part of the HapMap project. "" NA18859,NA18860,NA18861,NA18863 nsv64635 13 113882512 113882739 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv83213 M 24 "" nsv64423 13 113887259 113887340 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv83001 M 24 "" nsv524968 13 113887971 113905078 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700993 S 2026 0 1 "" nsv1197 13 113932521 113966963 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1175 S 9 1 0 "" NA19240 nsv832728 13 113949315 114030638 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450497 S 95 1 0 "" nsv456140 13 113955396 113995800 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533530 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00886 nsv456142 13 113978334 114004996 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533532 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00613 nsv521609 13 114004996 114025158 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698226 S 2026 1 0 "" nsv456143 13 114025158 114061118 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533533 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00423 nsv64869 13 114079018 114079018 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv83447 M 24 "" nsv518491 13 114082584 114121252 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695931 S 2026 0 1 "" nsv516205 13 114108121 114121252 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv683667,nssv683738,nssv666816,nssv701868 M 2026 0 4 "" nsv510626 14 18077979 18128310 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618910 S 4 0 1 "" NA10860 esv33527 14 18187183 19494445 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98132,essv101343,essv96342 M 51 2 1 "" 21772,21805,22371 nsv9117 14 18427834 19495241 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21938,nssv19331,nssv23575,nssv24454,nssv20986,nssv24973,nssv19385,nssv21198,nssv21168,nssv24532,nssv20796,nssv19642,nssv19702,nssv21288,nssv21016,nssv23843,nssv24518,nssv23789,nssv24466,nssv22118,nssv24632,nssv21737,nssv23762,nssv21839,nssv24544,nssv19241,nssv20664,nssv22678,nssv21939,nssv20966,nssv20724,nssv21565,nssv18880,nssv21200,nssv22117,nssv22618,nssv24494,nssv19511,nssv23897,nssv19451,nssv21334,nssv19481,nssv21795,nssv26641,nssv23603,nssv24506,nssv18910,nssv20162,nssv21535,nssv21170,nssv20996,nssv21998,nssv23816,nssv21968,nssv20973,nssv25023,nssv24998,nssv20694,nssv24442,nssv19361,nssv24520,nssv21228,nssv22147,nssv21797,nssv21825,nssv24492,nssv19301,nssv22057,nssv20766,nssv24682,nssv23870,nssv24630,nssv26654,nssv19399,nssv20936,nssv25048,nssv22058,nssv24468,nssv21677,nssv24440,nssv20192,nssv21364,nssv24734,nssv21869,nssv24656,nssv24708,nssv24480,nssv19271,nssv21258,nssv24692,nssv21827,nssv19672,nssv21855,nssv22148,nssv18940,nssv21707,nssv22648,nssv19391,nssv24948,nssv21885,nssv21899,nssv21318,nssv24546,nssv22028,nssv24558 M 31 9 30 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10847,NA10863,NA11830,NA12155,NA12740,NA12802,NA12872,NA18502,NA18504,NA18517,NA18537,NA18552,NA18563,NA18564,NA18572,NA18853,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19144,NA19173,NA19221,NA19240 nsv7248 14 18463289 19162026 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10007,nssv2059,nssv9502,nssv5489,nssv6581 M 9 0 0 "" NA12156,NA18507,NA18555,NA18956,NA19129 nsv442678 14 18521076 18539520 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv510627 14 18522922 18558749 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618911,nssv622680,nssv620069 M 4 0 3 "" NA10860,NA15510,NA18994 nsv1198 14 18528811 18550702 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10008 S 9 0 1 "" NA18956 nsv832729 14 18559876 18733123 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450524,nssv1450508,nssv1450502,nssv1450507,nssv1450523,nssv1450520,nssv1450519,nssv1450522,nssv1450521,nssv1450526,nssv1450501,nssv1450525,nssv1450532,nssv1450531,nssv1450527,nssv1450528,nssv1450500,nssv1450535,nssv1450534,nssv1450533,nssv1450499,nssv1450498,nssv1450504,nssv1450505,nssv1450511,nssv1450516,nssv1450530,nssv1450510,nssv1450509,nssv1450515,nssv1450503,nssv1450514,nssv1450512,nssv1450513 M 95 33 1 "" nsv471368 14 18623365 18654942 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548087,nssv548090,nssv548088 M 3 "" nsv832730 14 18662310 18987252 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450541,nssv1450536,nssv1450538,nssv1450537,nssv1450544,nssv1450547,nssv1450552,nssv1450546,nssv1450549,nssv1450548,nssv1450550,nssv1450554,nssv1450560,nssv1450559,nssv1450555,nssv1450556,nssv1450558,nssv1450539,nssv1450557,nssv1450569,nssv1450563,nssv1450545,nssv1450568,nssv1450577,nssv1450565,nssv1450567,nssv1450564,nssv1450566,nssv1450572,nssv1450570,nssv1450571,nssv1450576,nssv1450574,nssv1450575,nssv1450582,nssv1450578,nssv1450579,nssv1450542,nssv1450581,nssv1450543,nssv1450580,nssv1450583,nssv1450553,nssv1450561,nssv1450585 M 95 44 1 "" dgv598e1 14 18732531 19070091 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv5284,essv10210,essv15823,essv587,essv269,essv5041,essv2053,essv22120,essv2492,essv1382,essv17459,essv20332,essv7379,essv20157,essv17208,essv23437,essv2184,essv9597,essv17624,essv11719,essv9044,essv11786,essv24402,essv14626,essv14450,essv6240,essv20913,essv11496,essv17667,essv5742,essv14098,essv19093,essv19780,essv21165,essv19666,essv9242,essv9684,essv12385,essv23654,essv17067,essv18301,essv2308,essv12631,essv24750,essv16823 M 271 0 0 "" NA07055,NA10835,NA10846,NA10854,NA10857,NA10860,NA10863,NA11830,NA11832,NA11881,NA12043,NA12236,NA12264,NA12707,NA12753,NA12801,NA18500,NA18504,NA18576,NA18593,NA18623,NA18624,NA18636,NA18861,NA18913,NA18940,NA18949,NA18960,NA18978,NA18998,NA19003,NA19007,NA19093,NA19128,NA19132,NA19141,NA19152,NA19154,NA19171,NA19172,NA19173,NA19201,NA19205,NA19223,NA19238 dgv599e1 14 18732531 19626027 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv3307,essv8861,essv4671,essv18221,essv20119,essv1508,essv24715,essv15565,essv12001,essv7698,essv11810,essv23984,essv20308,essv10427,essv3188,essv10772,essv20763,essv24274,essv2589,essv1027,essv13610,essv8760,essv19615,essv23203,essv9150,essv12175,essv13715,essv12342,essv7801,essv15137,essv18617,essv9946,essv12785,essv14196,essv11133,essv23930,essv24909,essv13577,essv16921,essv15723,essv16679,essv23543,essv21003,essv5157,essv18077,essv27,essv5084,essv17550,essv16448,essv16274,essv4883,essv16514,essv14705,essv13429,essv5217,essv14357,essv1169,essv24044,essv11453,essv15672,essv9396,essv13802,essv7225,esv773,essv13911,essv22517,essv24893,essv19443,essv15264,essv19959,essv8348,essv13000,essv24594,essv18824,essv15350,essv9774,essv15009,essv18329,essv424,essv22932,essv21403,essv21980,essv22554,essv4458,essv12745,essv12464,essv13184,essv17808,essv1426,essv22810,essv24135,essv3698,essv21309,essv5458,essv20633,essv20572,essv19017,essv11927,essv2442,essv1144,essv3014,essv2237,essv2623,essv167,essv18736,essv17262,essv15475,essv10309,essv20071,essv22226 M 271 0 0 "" NA06991,NA06993,NA06994,NA07000,NA07048,NA07056,NA07345,NA07348,NA07357,NA10831,NA10847,NA10856,NA10859,NA11829,NA11840,NA11882,NA11992,NA11994,NA11995,NA12004,NA12005,NA12044,NA12057,NA12144,NA12145,NA12146,NA12155,NA12156,NA12234,NA12716,NA12740,NA12751,NA12762,NA12813,NA12814,NA12874,NA12878,NA12892,NA18502,NA18503,NA18505,NA18506,NA18508,NA18517,NA18521,NA18523,NA18547,NA18552,NA18558,NA18561,NA18564,NA18577,NA18611,NA18622,NA18632,NA18633,NA18853,NA18854,NA18857,NA18858,NA18859,NA18860,NA18862,NA18863,NA18870,NA18912,NA18914,NA18944,NA18947,NA18951,NA18952,NA18964,NA18966,NA18967,NA18968,NA18972,NA18974,NA18980,NA18981,NA18990,NA18991,NA18999,NA19005,NA19092,NA19094,NA19101,NA19102,NA19119,NA19120,NA19127,NA19129,NA19131,NA19137,NA19138,NA19139,NA19140,NA19142,NA19144,NA19145,NA19153,NA19159,NA19160,NA19161,NA19192,NA19194,NA19207,NA19210,NA19211,NA19222 nsv433422 14 18740757 19400957 CNV Gain Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463303 S 9 1 0 Samples from several populations that are part of the HapMap project. "" NA19240 nsv511028 14 18814351 18901225 OTHER Inversion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622402 S 4 0 0 "" NA10860 nsv1200 14 18820618 18865630 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9169 S 9 0 1 "" NA12156 nsv509525 14 18849142 18885351 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620996,nssv623658 M 4 2 0 "" NA15510,NA18994 nsv832731 14 18882916 19042636 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450621,nssv1450608,nssv1450594,nssv1450598,nssv1450612,nssv1450603,nssv1450610,nssv1450611,nssv1450614,nssv1450613,nssv1450616,nssv1450620,nssv1450619,nssv1450618,nssv1450624,nssv1450602,nssv1450623,nssv1450622,nssv1450627,nssv1450625,nssv1450626,nssv1450604,nssv1450597,nssv1450605,nssv1450596,nssv1450609,nssv1450607,nssv1450593,nssv1450615,nssv1450601,nssv1450599,nssv1450592,nssv1450600,nssv1450586,nssv1450591,nssv1450590,nssv1450589,nssv1450587,nssv1450588 M 95 39 0 "" dgv600e1 14 18908252 19070091 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv648,essv6344,essv4278,essv21836,essv7770,essv8649 M 271 0 0 "" NA11839,NA18542,NA18603,NA18609,NA18975,NA19239 dgv601e1 14 18908252 19626027 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv6563,essv4425,essv7296,essv5581,essv17883,essv1771,essv3732 M 271 0 0 "" NA12003,NA18529,NA18573,NA18592,NA18621,NA18961,NA18997 nsv509526 14 19039048 19081575 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620997 S 4 1 0 "" NA15510 nsv832732 14 19043164 19219012 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450630 S 95 0 1 "" dgv6n31 14 19093852 19393002 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis nsv471524,nsv471528,nsv471526 M 3 "" dgv24n68 14 19150166 19341196 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH nsv832734,nsv832733 M 95 72 0 "" dgv602e1 14 19215884 19543920 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv7887,essv4774,essv20978,essv3585,essv8198,essv2398,essv20815,essv2145,essv1308,essv3331,essv14832,essv1071,essv1542,essv1675,essv3596,essv13286,essv2379,essv9453,essv6088,essv550,essv23388,essv3491,essv5843,essv23262,essv8642,essv757,essv1368,essv2929,essv22607,essv3173,essv3244,essv22784,essv17869,essv12098,essv4542,essv7586,essv8316,essv3675,essv21353,essv5696,essv19706,essv7455,essv7675,essv15441,essv4129,essv11334,essv22711,essv17391,essv12069,essv1805,essv20731,essv14912,essv9963,essv10581,essv17327,essv21926,essv7048,essv20466,essv3844,essv5082,essv10509,essv24947,essv937,essv7958,essv11624,essv21477,essv1560,essv4320,essv17404,essv5658,essv23311,essv8715,essv6903,essv5668,essv4208,essv14581,essv6406,essv8575,essv12135,essv2765,essv19474,essv21637,essv13312,essv4517,essv25054,essv5329,essv7249,essv7102,essv20386,essv21907,essv6481,essv18675,essv5420,essv6457,essv11398,essv25175,essv19078,essv19872,essv20706,essv5909,essv11558,essv16579,essv18907,essv19153,essv4667,essv11469,essv17219,essv6927,essv5884,essv6791,essv25018,essv19338,essv5611,essv25089,essv18538,essv22011,essv4588,essv7978,essv24556,essv1336,essv12036,essv24349,essv916,essv19797,essv5639,essv10881,essv6947,essv13983,essv8019,essv13387,essv19203,essv16618,essv19317,essv6452,essv14931,essv24030,essv10464,essv9724,essv19031,essv15914,essv16374,essv1632,essv1985,essv3819,essv9,essv7900,essv18778,essv21424,essv22700,essv7652,essv6202,essv18553,essv3423,essv2108,essv3904,essv17692,essv23285,essv1043,essv21108,essv2738,essv23752,essv23095,essv5880,essv8904,essv5014,essv1698,essv3937,essv7999 M 271 0 0 "" NA06985,NA07029,NA07034,NA10830,NA10835,NA10838,NA10839,NA10851,NA10854,NA10855,NA10857,NA10860,NA10863,NA11830,NA11831,NA11840,NA11881,NA11993,NA11994,NA12004,NA12006,NA12043,NA12056,NA12057,NA12154,NA12236,NA12239,NA12249,NA12264,NA12707,NA12717,NA12750,NA12752,NA12753,NA12760,NA12761,NA12801,NA12802,NA12812,NA12814,NA12815,NA12864,NA12865,NA12872,NA12873,NA12891,NA18507,NA18515,NA18524,NA18526,NA18537,NA18542,NA18545,NA18550,NA18555,NA18562,NA18563,NA18564,NA18566,NA18570,NA18571,NA18576,NA18579,NA18582,NA18592,NA18593,NA18594,NA18605,NA18608,NA18609,NA18612,NA18620,NA18621,NA18623,NA18632,NA18635,NA18636,NA18637,NA18855,NA18856,NA18857,NA18871,NA18872,NA18913,NA18942,NA18943,NA18945,NA18948,NA18949,NA18953,NA18956,NA18959,NA18960,NA18965,NA18967,NA18968,NA18969,NA18970,NA18971,NA18973,NA18975,NA18976,NA18978,NA18980,NA18987,NA18990,NA18992,NA18995,NA18997,NA18998,NA18999,NA19000,NA19003,NA19007,NA19012,NA19098,NA19099,NA19103,NA19116,NA19119,NA19128,NA19129,NA19130,NA19132,NA19140,NA19143,NA19154,NA19171,NA19172,NA19173,NA19192,NA19193,NA19200,NA19202,NA19203,NA19204,NA19205,NA19206,NA19208,NA19221,NA19238,NA19239,NA19240 dgv603e1 14 19215884 19626027 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv10196,essv1220,essv22302,essv10138,essv8442,essv23609,essv24521,essv21117,essv17198,essv19500,essv22095,essv3518 M 271 0 0 "" NA06985,NA12006,NA12154,NA12802,NA12815,NA12864,NA18516,NA18965,NA18995,NA19130,NA19171 nsv821676 14 19267456 19468888 CNV Gain Sebat_et_al_2004 15273396 ROMA Custom Nimblegen photoprint 85000 probe ROMA oligo array nssv1421260,nssv1421266,nssv1421256,nssv1421258,nssv1421267,nssv1421270,nssv1421263,nssv1421253,nssv1421269,nssv1421259,nssv1421261,nssv1421262,nssv1421252,nssv1421264,nssv1421254,nssv1421265,nssv1421255,nssv1421271 M 31 18 0 "" nsv442679 14 19270023 19493212 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv433273 14 19272965 19400957 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463154 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA12156 dgv79e55 14 19272965 19502884 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv2751253,esv2751237,esv2751173,esv2751172,esv2751254,esv34969,esv34250,esv2751190,esv34626,esv34980,esv34443,esv34321,esv34398,esv34521,esv34582,esv34625,esv34638,esv34645,esv35009,esv35020,esv2751170,esv2751171,esv2751174,esv2751175,esv2751194,esv2751219,esv2751235,esv2751236,esv2751238,esv2751239,esv2751241,esv2751242 M 771 0 32 "" BEC_415,BEC_468,BEC_581,BEC_586,BEC_618,BEC_721,BEC_9,NA12155,NA12813,NA12865,NA12874,NA18515,NA18529,NA18532,NA18537,NA18552,NA18561,NA18573,NA18577,NA18611,NA18622,NA18633,NA18940,NA18944,NA18952,NA18966,NA18972,NA18974,NA18981,NA18991,NA18998,SPC_7 dgv80e55 14 19272965 19553500 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv2751244,esv2751193,esv2751256,esv34678,esv2751223,esv2751224,esv34394,esv35039,esv34596,esv2751191,esv2751177,esv2751176,esv2751216,esv2751185,esv2751248,esv34371,esv2751198,esv34802,esv34535,esv35085,esv34792,esv34593,esv2751250,esv34549,esv2751180,esv2751209,esv2751226,esv2751166,esv2751162,esv2751163,esv2751165,esv2751164,esv2751262,esv2751181,esv2751211,esv35105,esv2751229,esv2751203,esv2751189,esv2751225,esv2751187,esv2751257,esv34204,esv34244,esv34246,esv34259,esv34286,esv34295,esv34311,esv34363,esv34399,esv34416,esv34430,esv34454,esv34456,esv34481,esv34505,esv34524,esv34553,esv34555,esv34633,esv34655,esv34766,esv34770,esv2751252,esv34836,esv34844,esv34927,esv34976,esv35000,esv35113,esv35129,esv35131,esv35132,esv35135,esv35151,esv2751167,esv2751168,esv2751169,esv2751178,esv2751179,esv2751182,esv2751183,esv2751184,esv2751186,esv2751188,esv2751192,esv2751195,esv2751196,esv2751197,esv2751199,esv2751200,esv2751201,esv2751202,esv2751204,esv2751205,esv2751206,esv2751207,esv2751208,esv2751210,esv2751212,esv2751213,esv2751214,esv2751215,esv2751217,esv2751218,esv2751220,esv2751221,esv2751222,esv2751227,esv2751230,esv2751231,esv2751232,esv2751233,esv2751234,esv2751240,esv2751243,esv2751245,esv2751246,esv2751247,esv2751249,esv2751251,esv2751255,esv2751261,esv2751263,esv2751228,esv2751260,esv2751259,esv2751258 M 771 129 0 "" BEC_114,BEC_132,BEC_175,BEC_177,BEC_287,BEC_294,BEC_299,BEC_301,BEC_307,BEC_309,BEC_337,BEC_342,BEC_348,BEC_351,BEC_353,BEC_371,BEC_382,BEC_386,BEC_389,BEC_395,BEC_397,BEC_41,BEC_424,BEC_425,BEC_427,BEC_431,BEC_433,BEC_460,BEC_470,BEC_501,BEC_503,BEC_515,BEC_532,BEC_533,BEC_540,BEC_541,BEC_547,BEC_551,BEC_556,BEC_561,BEC_569,BEC_57,BEC_570,BEC_592,BEC_596,BEC_601,BEC_604,BEC_605,BEC_608,BEC_628,BEC_629,BEC_637,BEC_652,BEC_661,BEC_665,BEC_668,BEC_673,BEC_675,BEC_680,BEC_683,BEC_689,BEC_693,BEC_698,BEC_699,BEC_706,BEC_707,BEC_711,BEC_724,BEC_734,BEC_736,BEC_74,BEC_741,BEC_742,BEC_765,BEC_768,BEC_775,BEC_785,BEC_8,BEC_91,NA06985,NA10830,NA10839,NA11994,NA12004,NA12006,NA12717,NA12752,NA12802,NA12815,NA12864,NA18516,NA18526,NA18550,NA18564,NA18582,NA18592,NA18594,NA18605,NA18632,NA18857,NA18871,NA18943,NA18965,NA18968,NA18990,NA18995,NA18997,NA19007,NA19012,NA19130,NA19171,NA19200,NA19239,NA19240,SPC_10,SPC_102,SPC_133,SPC_140,SPC_163,SPC_165,SPC_174,SPC_193,SPC_2,SPC_23,SPC_3,SPC_34,SPC_4,SPC_85,SPC_93 dgv81e55 14 19272965 19696000 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv2751266,esv2751264,esv2751265,esv2751267 M 771 4 0 "" BEC_22,BEC_354,BEC_563,BEC_633 esv2751268 14 19272965 19786681 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6987553,essv6984313,essv6984314,essv6988786 M 771 1 0 "" BEC_688 nsv832735 14 19289488 19485285 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450723,nssv1450724,nssv1450759,nssv1450721,nssv1450722,nssv1450729,nssv1450727,nssv1450725,nssv1450726,nssv1450735,nssv1450738,nssv1450733,nssv1450730,nssv1450731,nssv1450737,nssv1450736,nssv1450734,nssv1450742,nssv1450758,nssv1450741,nssv1450743,nssv1450732,nssv1450748,nssv1450745,nssv1450746,nssv1450744,nssv1450747,nssv1450750,nssv1450757,nssv1450752,nssv1450756,nssv1450754,nssv1450753,nssv1450755,nssv1450710,nssv1450720,nssv1450760,nssv1450715,nssv1450761,nssv1450764,nssv1450763,nssv1450713,nssv1450711,nssv1450714,nssv1450712,nssv1450719,nssv1450716,nssv1450718,nssv1450749 M 95 49 0 "" dgv604e1 14 19309086 19525204 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv9527,essv12435,essv8412,essv12005,essv9481,essv8995,essv6050,essv18502,essv11371,essv15976,essv6545,essv14204,essv13962 M 271 0 0 "" NA12763,NA18603,NA18624,NA18913,NA19093,NA19127,NA19141,NA19142,NA19152,NA19154,NA19160,NA19194,NA19223 dgv82e55 14 19309319 19492423 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv35086,esv34495,esv34559,esv34995,esv34530,esv35114,esv2751269 M 771 7 0 "" BEC_810,NA12154,NA12760,NA12872,NA18856,NA19000,NA19173 esv34243 14 19309319 19580947 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6979444,essv6979443 M 771 0 1 "" NA18558 nsv471369 14 19318322 19319262 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548091,nssv548092,nssv548093 M 3 "" dgv605e1 14 19337785 19502828 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv194,essv18462,essv21746,essv6523 M 271 0 0 "" NA10861,NA11832,NA18572,NA18994 essv15197 14 19337785 19580947 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18504 nsv517699 14 19375271 19502504 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv662758,nssv687044,nssv689969,nssv676606,nssv691536,nssv667107,nssv654901,nssv687258,nssv652892,nssv680187,nssv676636,nssv686133,nssv670265,nssv684435,nssv666942,nssv657160,nssv658535,nssv681889,nssv662317,nssv667313,nssv672701,nssv659328,nssv673266,nssv686260,nssv661439,nssv671911,nssv692310,nssv673003,nssv660668,nssv681138,nssv685241,nssv667637,nssv683990,nssv675812 M 2026 29 5 "" nsv520814 14 19375271 19536664 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697626 S 2026 0 1 "" nsv1201 14 19413225 19426275 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9170 S 9 0 1 "" NA12156 nsv471370 14 19414267 19415211 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548095,nssv548094 M 3 "" nsv832737 14 19432768 19595839 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450775,nssv1450774,nssv1450776,nssv1450772,nssv1450765,nssv1450771,nssv1450768,nssv1450766,nssv1450767,nssv1450770,nssv1450769 M 95 11 0 "" nsv469855 14 19440980 19574860 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649876 M 265 0 19 Samples from several populations that are part of the HapMap project. "" dgv606e1 14 19444633 19488997 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv12905,essv14035,essv8559 M 271 0 0 "" NA18503,NA18522,NA18862 nsv471372 14 19458606 19459575 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548096,nssv548097 M 3 "" essv4 14 19502641 19543920 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18945 nsv525754 14 19552311 19571152 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701922 S 2026 0 1 "" nsv832738 14 19568462 19714291 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450777 S 95 0 1 "" nsv9118 14 19588055 19611568 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21230 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18853 essv8070 14 19590226 19608948 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19161 nsv818997 14 19590900 19609145 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416493,nssv1417932,nssv1416495,nssv1417931 M 112 4 0 "" NA18515,NA18516,NA18853,NA18854 dgv122n21 14 19590900 19664229 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv520054,nsv524732 M 2026 13 0 "" nsv442326 14 19591275 19609202 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv1202 14 19592700 19656887 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6582,nssv1176,nssv2060 M 9 0 3 "" NA12156,NA18555,NA19240 nsv818998 14 19598047 19609145 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416793,nssv1416792 M 112 2 0 "" NA19159,NA19161 nsv9119 14 19612261 19625950 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23631,nssv21915,nssv22177,nssv21929,nssv26667,nssv21003,nssv20826,nssv25073,nssv21348,nssv21969,nssv24658,nssv21260,nssv24644,nssv21026,nssv24760,nssv21857,nssv22178,nssv21454,nssv22707 M 31 19 0 Samples from several populations that are part of the HapMap project. "" NA07048,NA10839,NA10863,NA11830,NA12155,NA12740,NA18502,NA18504,NA18517,NA18537,NA18563,NA18564,NA18853,NA18860,NA19007,NA19132,NA19144,NA19173,NA19221 nsv510628 14 19614671 19626567 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618912 S 4 0 1 "" NA10860 nsv511029 14 19614671 19636574 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621626 S 4 0 0 "" NA15510 nsv521393 14 19673739 19692827 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698003 S 2026 0 1 "" nsv832739 14 19673966 19804062 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450778 S 95 1 0 "" nsv85568 14 19688562 19691748 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv104146 M 24 "" nsv456144 14 19754117 19778958 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533534 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00359 nsv9120 14 19762808 19767195 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19445 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA10847 nsv442327 14 20034116 20041622 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv528120 14 20037484 20041624 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704663 S 2026 1 0 "" nsv1203 14 20190708 20235917 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9171 S 9 0 1 "" NA12156 nsv521333 14 20272055 20272999 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697940 S 2026 0 1 "" dgv607e1 14 20285948 20541454 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv8197,essv17046,essv6711,esv559,essv10060,essv249,essv2004,essv16477,essv17030 M 271 0 0 "" NA18608,NA18948,NA18949,NA19099,NA19116,NA19139,NA19144,NA19172 dgv608e1 14 20383476 20541454 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv10526,essv12986,essv15573,essv4240,essv4968,essv8621 M 271 0 0 "" NA18603,NA18637,NA18859,NA19137,NA19239,NA19240 nsv832740 14 20401900 20614892 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450779 S 95 1 0 "" nsv9121 14 20411743 20496489 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25098,nssv22736,nssv22795,nssv26680,nssv25123,nssv23924 M 31 2 2 Samples from several populations that are part of the HapMap project. "" NA18860,NA19144,NA19221,NA19240 nsv817619 14 20413004 20483442 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417392 S 112 1 0 "" NA18949 nsv517174 14 20413004 20490928 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv671118,nssv693491,nssv683303,nssv683885,nssv686336,nssv666990,nssv684436,nssv670507,nssv655686,nssv673474,nssv689395,nssv677147,nssv678003,nssv671044,nssv659068,nssv652835,nssv684992,nssv659608,nssv678844,nssv652578,nssv662924,nssv685726,nssv663573,nssv657492,nssv673531,nssv691901,nssv675161,nssv667744,nssv680480,nssv668939,nssv694148,nssv687516,nssv675256,nssv664453,nssv666046,nssv671928,nssv684018,nssv677570,nssv667914,nssv692373,nssv687610,nssv681155,nssv675630,nssv664308,nssv670469,nssv676735,nssv692254,nssv653187,nssv700970,nssv669237,nssv660888,nssv671770,nssv677670,nssv667562,nssv654668,nssv688652,nssv651935,nssv679640,nssv692486,nssv679725,nssv692116,nssv653675,nssv684162,nssv670117,nssv652457,nssv686528,nssv666780,nssv658765,nssv654470,nssv658223,nssv693930,nssv686489,nssv661014,nssv676032,nssv658817,nssv661899,nssv680909,nssv670607,nssv665990,nssv667361,nssv664849,nssv666074,nssv656509,nssv659416,nssv693897,nssv690911,nssv700377,nssv683945,nssv658320,nssv702506,nssv682876,nssv684904,nssv669743,nssv693686,nssv691417,nssv688614,nssv658491,nssv654950,nssv660587,nssv689572,nssv677724,nssv676416,nssv693403 M 2026 3 100 "" nsv1204 14 20413244 20487448 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1177 S 9 0 1 "" NA19240 nsv1205 14 20414552 20447050 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6583 S 9 1 0 "" NA12156 nsv442680 14 20419446 20479821 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv609e1 14 20422939 20443497 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv6933,essv7892 M 271 0 0 "" NA18608,NA19239 essv941 14 20422939 20503182 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18949 nsv433274 14 20427995 20475725 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463155 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA19240 nsv817620 14 20431224 20469417 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416970,nssv1416971,nssv1418206,nssv1416675 M 112 0 4 "" NA19116,NA19137,NA19139,NA19144 nsv456146 14 20431224 20502295 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533535 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00472 nsv1206 14 20459417 20507579 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4097,nssv9173 M 9 2 0 "" NA12156,NA12878 nsv527381 14 20492506 20494558 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703814 S 2026 1 0 "" nsv84528 14 20605985 20606310 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103106 M 24 "" dgv123n21 14 20610703 20644530 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv525724,nsv528337 M 2026 0 2 "" nsv524093 14 20644530 20722737 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699966 S 2026 1 0 "" nsv520641 14 20701168 20702271 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697533 S 2026 0 1 "" nsv509527 14 20796525 20840137 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620998,nssv623659 M 4 2 0 "" NA15510,NA18994 esv2422459 14 21001464 21239342 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161519 S 181 1 0 "" ND03401 nsv85879 14 21035530 21044038 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv104457 M 24 "" nsv522850 14 21059681 21067948 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698503 S 2026 1 0 "" nsv515769 14 21103775 21104464 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv657273,nssv663574,nssv667144,nssv664727 M 2026 0 4 "" nsv525849 14 21118254 21124872 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702043 S 2026 1 0 "" nsv433423 14 21119138 21124976 CNV Gain Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463304 S 9 1 0 Samples from several populations that are part of the HapMap project. "" NA19240 nsv442681 14 21119983 21125597 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv817621 14 21121359 21123703 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416866,nssv1416865,nssv1416867 M 112 3 0 "" NA19238,NA19239,NA19240 nsv516092 14 21121359 21124872 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv669682,nssv671145,nssv689747,nssv690036,nssv685039,nssv674248,nssv660331,nssv685090,nssv678926,nssv693240,nssv666150,nssv658321,nssv668267 M 2026 13 0 "" nsv817622 14 21121359 21124872 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418207,nssv1418208 M 112 2 0 "" NA19144,NA19145 nsv526137 14 21121359 21139619 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702392 S 2026 1 0 "" nsv1207 14 21125821 21128950 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1178 S 9 1 0 "" NA19240 nsv456147 14 21143313 21374911 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533536 S 1557 1 0 "" NINDS_244 nsv510629 14 21204265 21285682 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620070 S 4 0 1 "" NA15510 nsv85718 14 21206392 21206392 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv104296 M 24 "" nsv507735 14 21272603 21278603 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617875 S 4 1 0 "" CHM nsv528996 14 21290409 21312133 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705700 S 2026 0 1 "" nsv832741 14 21305621 21483477 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450780 S 95 1 0 "" nsv456148 14 21312133 21362645 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533537 S 1557 0 1 "" NINDS_160 nsv524527 14 21358681 21457158 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700476 S 2026 0 1 "" nsv525130 14 21359199 21362645 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701198 S 2026 1 0 "" nsv84428 14 21364507 21368152 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103006 M 24 "" nsv832742 14 21377600 21571588 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450781,nssv1450788,nssv1450783,nssv1450786,nssv1450785,nssv1450787,nssv1450782 M 95 7 0 "" nsv1208 14 21384281 21419601 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4098 S 9 1 0 "" NA12878 nsv520214 14 21398771 21400270 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv688002,nssv661926 M 2026 0 2 "" dgv124n21 14 21406603 21426065 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv522337,nsv520616 M 2026 0 2 "" dgv610e1 14 21462543 21466983 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv12893,esv1234 M 271 0 0 "" NA18522 nsv520915 14 21480460 21490309 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv677639,nssv689080 M 2026 2 0 "" nsv528406 14 21498824 21504263 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704998 S 2026 0 1 "" nsv516346 14 21523755 21528535 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv667721,nssv663210,nssv683668,nssv688521 M 2026 0 4 "" nsv523482 14 21523755 21531435 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699248 S 2026 0 1 "" nsv527415 14 21528535 21531435 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703853 S 2026 0 1 "" nsv507736 14 21565899 21571899 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619123,nssv617876,nssv623160 M 4 3 0 "" CHM,NA10860,NA18994 nsv456149 14 21568242 21604830 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533538 S 1557 0 1 "" NINDS_119 nsv821693 14 21581346 22040241 CNV Loss Sebat_et_al_2004 15273396 ROMA Custom Nimblegen photoprint 85000 probe ROMA oligo array nssv1421331 S 31 0 1 "" nsv832743 14 21628027 21807284 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450807,nssv1450800,nssv1450803,nssv1450798,nssv1450799,nssv1450802,nssv1450789,nssv1450805,nssv1450801,nssv1450790,nssv1450793,nssv1450808,nssv1450797,nssv1450792,nssv1450791,nssv1450796,nssv1450794,nssv1450804 M 95 18 0 "" nsv528420 14 21656232 21657593 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705012 S 2026 0 1 "" nsv517292 14 21657593 21662834 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv689211,nssv670282,nssv668307,nssv654224 M 2026 0 4 "" nsv84297 14 21699639 21699639 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv102875 M 24 "" nsv832744 14 21763281 21977510 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450838,nssv1450846,nssv1450824,nssv1450841,nssv1450833,nssv1450831,nssv1450843,nssv1450842,nssv1450820,nssv1450819,nssv1450818,nssv1450821,nssv1450840,nssv1450844,nssv1450845,nssv1450823,nssv1450822,nssv1450832,nssv1450834,nssv1450848,nssv1450816,nssv1450847,nssv1450837,nssv1450830,nssv1450809,nssv1450835,nssv1450811,nssv1450826,nssv1450810,nssv1450815,nssv1450813,nssv1450849,nssv1450829,nssv1450825,nssv1450812,nssv1450836,nssv1450814,nssv1450852,nssv1450827 M 95 39 0 "" nsv9122 14 21790551 21803445 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26692 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19221 dgv125n21 14 21806501 22011989 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv527934,nsv522021 M 2026 0 2 "" nsv456151 14 21816895 21838610 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533539 S 1557 0 1 "" NINDS_272 nsv523638 14 21819582 21923525 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699438 S 2026 0 1 "" nsv519395 14 21822713 21826110 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696831 S 2026 0 1 "" nsv520510 14 21834952 21862055 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694194,nssv671964,nssv679218 M 2026 3 0 "" nsv84391 14 21844676 21845208 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv102969 M 24 "" nsv520383 14 21864135 21867816 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv680506,nssv663469,nssv685743 M 2026 0 3 "" nsv832745 14 21867480 22006855 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450875,nssv1450888,nssv1450853,nssv1450889,nssv1450872,nssv1450878,nssv1450865,nssv1450861,nssv1450863,nssv1450886,nssv1450868,nssv1450893,nssv1450860,nssv1450890,nssv1450866,nssv1450894,nssv1450857,nssv1450859,nssv1450855,nssv1450870,nssv1450885,nssv1450877,nssv1450856,nssv1450864,nssv1450871,nssv1450887,nssv1450858,nssv1450891,nssv1450869,nssv1450867,nssv1450876,nssv1450874,nssv1450883,nssv1450879,nssv1450854,nssv1450882,nssv1450881,nssv1450880,nssv1450892 M 95 39 0 "" nsv524622 14 21878594 21956159 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700583 S 2026 0 1 "" nsv523766 14 21923525 21957570 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699587 S 2026 0 1 "" nsv84357 14 21951507 21952099 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv102935 M 24 "" nsv9123 14 21952934 21966898 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21046 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18552 nsv528745 14 21956159 21999998 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705406 S 2026 0 1 "" nsv1209 14 21969113 22012663 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1179 S 9 0 1 "" NA19240 dgv126n21 14 21970760 21986886 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv516269,nsv527273 M 2026 0 8 "" dgv243n27 14 21970760 21986886 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv456157,nsv456158 M 1557 0 2 "" HGDP00230,HGDP00938 nsv456160 14 21991120 22029432 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533543 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01240 nsv456161 14 21995192 21999878 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533544 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00882 dgv611e1 14 22011989 22057862 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1308,essv12028 M 271 0 0 "" NA19116 nsv456162 14 22012730 22033486 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533545 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00438 nsv456164 14 22020088 22033486 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533547 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01173 nsv520779 14 22024617 22042795 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv688762,nssv675333 M 2026 0 2 "" nsv832746 14 22045388 22220635 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450896 S 95 1 0 "" nsv832748 14 22054064 22168775 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450897 S 95 1 0 "" nsv1211 14 22055108 22089002 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2913 S 9 1 0 "" NA18555 nsv518467 14 22089004 22101673 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695903 S 2026 0 1 "" nsv85174 14 22093004 22093079 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103752 M 24 "" nsv519534 14 22122217 22122711 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv656725,nssv660669,nssv684671 M 2026 0 3 "" nsv520576 14 22149570 22163380 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697499 S 2026 0 1 "" nsv1212 14 22157787 22184959 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1180,nssv4099,nssv2061 M 9 0 3 "" NA12878,NA18555,NA19240 nsv442329 14 22164681 22169049 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv127n21 14 22230034 22329539 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv522569,nsv528804 M 2026 2 0 "" nsv84994 14 22258660 22258897 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103572 M 24 "" nsv1213 14 22265827 22284362 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2062 S 9 1 0 "" NA18555 nsv519176 14 22327968 22328029 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696659 S 2026 0 1 "" nsv522410 14 22327968 22340436 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695192 S 2026 0 1 "" nsv1214 14 22416901 22429541 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9174 S 9 0 1 "" NA12156 nsv84692 14 22575529 22575718 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103270 M 24 "" nsv518632 14 22631033 22633735 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694255 S 2026 0 1 "" nsv1215 14 22673997 22706847 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2063 S 9 1 0 "" NA18555 nsv456166 14 22931651 22957705 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533548 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00564 nsv524778 14 23058626 23060945 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700769 S 2026 0 1 "" nsv1216 14 23205370 23234492 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10009 S 9 1 0 "" NA18956 nsv526100 14 23294841 23304240 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702348 S 2026 1 0 "" nsv85328 14 23464416 23464468 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103906 M 24 "" nsv1217 14 23470405 23582529 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2064,nssv4103,nssv10010,nssv10916,nssv5490,nssv6585,nssv10915,nssv9503,nssv10011,nssv9299,nssv6584,nssv1182,nssv2065,nssv5493,nssv10012,nssv6586,nssv5492,nssv1183,nssv4100 M 9 0 9 "" NA12156,NA12878,NA15510,NA18507,NA18517,NA18555,NA18956,NA19129,NA19240 nsv525015 14 23471589 23476146 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701054 S 2026 0 1 "" nsv89 14 23475038 23545053 CNV Loss Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv89 S 1 0 1 "" NA15510 nsv1218 14 23480685 23522458 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9175,nssv1181,nssv4101 M 9 3 0 "" NA12156,NA12878,NA19240 nsv9124 14 23494551 23544616 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21056 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19007 nsv509528 14 23497616 23516314 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618104,nssv623660 M 4 2 0 "" CHM,NA18994 nsv511030 14 23497616 23559088 OTHER Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621627,nssv622403 M 4 0 0 "" NA10860,NA15510 esv33403 14 23499453 23574945 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97565,essv94106,essv97448 M 51 0 3 "" 21616,21802,21879 nsv482169 14 23527867 23545459 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558530 S 1 1 0 "" KB1 nsv510630 14 23532746 23559088 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622681,nssv617412 M 4 0 2 "" CHM,NA18994 nsv91 14 23539508 23574552 CNV Loss Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv91 S 1 0 1 "" NA15510 nsv84893 14 23541009 23543023 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103471 M 24 "" nsv9126 14 23545680 23575554 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25148,nssv22208 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA12155,NA18860 nsv1219 14 23551384 23560817 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6587,nssv10013 M 9 2 0 "" NA12156,NA18956 nsv516023 14 23559445 23620064 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv685511,nssv691221,nssv696637,nssv682486,nssv665776,nssv678429 M 2026 0 6 "" nsv482170 14 23575550 23590420 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558531 S 1 1 0 "" KB1 nsv7249 14 23697349 23721171 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6588 S 9 0 0 "" NA12156 nsv522667 14 23711366 23724430 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv706071 S 2026 0 1 "" nsv1220 14 23720607 23735813 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1184,nssv4104 M 9 2 0 "" NA12878,NA19240 nsv84620 14 23748104 23748104 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103198 M 24 "" nsv516237 14 23863602 23869198 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv682128,nssv669111,nssv666991,nssv686806,nssv670608 M 2026 0 5 "" nsv482171 14 23978814 23981847 CNV Loss Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558532 S 1 0 1 "" KB1 nsv1222 14 23984668 24007478 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5494 S 9 1 0 "" NA19129 dgv128n21 14 23985223 24062459 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv521915,nsv523200 M 2026 2 0 "" nsv511031 14 23994965 24047834 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621628 S 4 0 0 "" NA15510 nsv510367 14 23999200 24005200 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618396 S 4 0 1 "" CHM nsv85110 14 24002460 24002623 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103688 M 24 "" nsv510368 14 24008671 24014671 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622243,nssv624157,nssv618397 M 4 0 3 "" CHM,NA10860,NA18994 nsv520387 14 24023842 24037660 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv692745,nssv691222,nssv663539 M 2026 3 0 "" nsv510631 14 24115023 24242151 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622682 S 4 0 1 "" NA18994 nsv510369 14 24332117 24338117 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618398,nssv622244,nssv624158,nssv621410 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv525203 14 24340175 24352807 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701285 S 2026 1 0 "" nsv456169 14 24340175 24358067 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533549 S 1557 1 0 "" 1782681263_A nsv527684 14 24583966 24588166 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704160 S 2026 0 1 "" nsv515613 14 24680517 24681991 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv674143,nssv670266,nssv693676,nssv664405,nssv664351,nssv687611,nssv687360,nssv671017,nssv692509,nssv679693,nssv671744,nssv684456,nssv670584,nssv678938,nssv669830,nssv677189,nssv687002,nssv664103,nssv669471,nssv688740,nssv676712,nssv667518,nssv669642,nssv675986,nssv654424,nssv672369,nssv656510,nssv662098,nssv672702,nssv693759,nssv664523 M 2026 0 31 "" nsv524648 14 24680517 24686028 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700614 S 2026 0 1 "" nsv84679 14 24705739 24705825 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103257 M 24 "" nsv832749 14 24892780 25062126 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450898 S 95 0 1 "" nsv832750 14 24926668 25091932 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450899 S 95 1 0 "" nsv832751 14 25158882 25369411 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450900 S 95 0 1 "" dgv612e1 14 25297720 25474958 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv3020,essv24382,essv3374,essv7160,essv23472,essv19688,essv15129,essv1852,essv24086,essv4757,essv20031,esv40,essv22515,essv17771,essv16217,essv5236 M 271 0 0 "" NA07034,NA07048,NA10831,NA10859,NA11882,NA12264,NA12707,NA18547,NA18620,NA18624,NA18945,NA18976,NA18981,NA19129,NA19161 nsv1223 14 25366811 25401012 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9176 S 9 1 0 "" NA12156 nsv456170 14 25493319 25548451 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533550 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00734 nsv510370 14 25552922 25558922 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622245 S 4 0 1 "" NA10860 esv2751270 14 25758530 25854753 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6989474,essv6990075,essv6985089 M 771 0 1 "" BEC_95 nsv442330 14 25832761 25849239 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" esv34427 14 25833100 25854753 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6978244,essv6989008 M 771 0 1 "" NA18991 esv35052 14 25833100 25904409 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6979348,essv6979349 M 771 0 1 "" NA18532 dgv613e1 14 25833467 25854753 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv3649,esv1028 M 271 0 0 "" NA18991 nsv84603 14 25948412 25948473 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103181 M 24 "" nsv85659 14 26011784 26021034 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv104237 M 24 "" nsv516289 14 26153497 26159322 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv688878,nssv679872,nssv674303,nssv667362 M 2026 0 4 "" nsv524666 14 26233927 26254639 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700635 S 2026 0 1 "" nsv523231 14 26244242 26304106 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698954 S 2026 0 1 "" nsv832752 14 26371296 26537745 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450901 S 95 0 1 "" nsv520192 14 26508306 26557988 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697272 S 2026 0 1 "" nsv832753 14 26520749 26678310 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450902 S 95 0 1 "" nsv456171 14 26552009 26557988 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533551 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00998 nsv520542 14 26552009 26557988 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv672347,nssv686134 M 2026 0 2 "" nsv832754 14 26582402 26743658 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450904,nssv1450903 M 95 2 0 "" nsv522117 14 26598080 26739376 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694890 S 2026 0 1 "" nsv526933 14 26605274 26666770 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703301 S 2026 0 1 "" nsv526269 14 26640400 26705122 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702542 S 2026 0 1 "" nsv456175 14 26733505 26785852 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533552 S 1557 0 1 "" 1780854219_A nsv528232 14 26737249 26739376 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704794 S 2026 0 1 "" nsv9127 14 26810831 27124966 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20222 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA07029 nsv527092 14 26879935 26885847 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703471 S 2026 0 1 "" nsv456177 14 26906826 26946105 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533553 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00608 nsv85105 14 26948277 26954299 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103683 M 24 "" nsv520836 14 26994025 27097765 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705312,nssv704538,nssv704945,nssv703864,nssv693162,nssv676279 M 2026 0 6 "" nsv456178 14 27093646 27156570 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533554 S 1557 0 1 "" 1787431198_A nsv456179 14 27093646 27198064 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533555 S 1557 0 1 "" 1780862001_A nsv510371 14 27094999 27100999 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621411 S 4 0 1 "" NA15510 dgv614e1 14 27134939 27513082 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1844,essv20056,esv133,essv3411,essv5328,essv7011,essv15512 M 271 0 0 "" NA07048,NA18505,NA18563,NA18612,NA18945,NA18976 nsv456180 14 27189441 27252967 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533556 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01034 nsv9128 14 27285651 27399660 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21887 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18563 essv2878 14 27310291 27513082 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18953 nsv510372 14 27330994 27336994 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622246 S 4 0 1 "" NA10860 nsv456181 14 27424438 27511721 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533557 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01053 nsv9129 14 27460740 27466646 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24785 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18502 nsv518260 14 27470396 27490931 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695691 S 2026 0 1 "" dgv129n21 14 27489495 27490931 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv523307,nsv521778 M 2026 0 2 "" nsv817623 14 27489495 27500305 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418101 S 112 0 1 "" NA10859 dgv244n27 14 27489495 27534453 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv456187,nsv456188 M 1557 0 2 "" 1780854536_A,NINDS_222 nsv817624 14 27499206 27536067 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416393 S 112 0 1 "" NA18855 nsv456190 14 27532119 27554764 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533561 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00173 nsv456191 14 27532119 27589002 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533562 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00630 nsv456192 14 27639535 27683818 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533563 S 1557 0 1 "" NINDS_173 nsv507737 14 27731043 27737043 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619124,nssv617877,nssv623161,nssv620555 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv507738 14 27737484 27743484 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623162,nssv617878,nssv620556 M 4 3 0 "" CHM,NA15510,NA18994 nsv442331 14 27738124 27740489 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv1224 14 27849111 27894284 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9177 S 9 0 1 "" NA12156 nsv526536 14 27861440 30208129 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702849 S 2026 1 0 "" nsv1225 14 27937491 27965033 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2068 S 9 0 1 "" NA18555 nsv85190 14 27939598 27941914 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103768 M 24 "" nsv832755 14 27958992 28138444 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450905 S 95 1 0 "" nsv1226 14 27963151 27996997 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5495 S 9 1 0 "" NA19129 nsv832756 14 28014644 28169731 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450907 S 95 1 0 "" nsv84340 14 28087752 28097097 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv102918 M 24 "" nsv832757 14 28113969 28267903 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450909,nssv1450908,nssv1450910 M 95 3 0 "" nsv521687 14 28185867 28187993 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698307 S 2026 0 1 "" nsv515834 14 28202628 28209397 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv680573,nssv664944,nssv691644,nssv682799 M 2026 0 4 "" nsv525536 14 28294584 28300611 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701671 S 2026 1 0 "" nsv528509 14 28294584 28300611 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705116 S 2026 0 1 "" nsv520282 14 28294584 28313472 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697324 S 2026 0 1 "" nsv1227 14 28306805 28340584 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9180 S 9 1 0 "" NA12156 esv33594 14 28356799 28359803 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98935 S 51 0 1 "" 21606 nsv510373 14 28622311 28628311 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622247,nssv621412,nssv618399,nssv624159 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv456194 14 28688518 28735220 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533564 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01238 nsv521529 14 28792243 28825619 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698146 S 2026 0 1 "" nsv832760 14 28838878 29012596 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450911 S 95 1 0 "" nsv85030 14 28867389 28867460 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103608 M 24 "" nsv1228 14 29063788 29108846 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9181 S 9 0 1 "" NA12156 nsv85477 14 29065757 29065757 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv104055 M 24 "" nsv518869 14 29219275 29270280 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696325 S 2026 0 1 "" nsv832761 14 29367941 29493918 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450912 S 95 0 1 "" nsv456195 14 29404718 29472513 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533565 S 1557 0 1 "" NINDS_123 nsv518206 14 29409562 29412569 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695630 S 2026 0 1 "" nsv510374 14 29721893 29727893 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618400 S 4 0 1 "" CHM nsv437795 14 29742967 29745910 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467676 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18500 nsv1229 14 29819732 29843769 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4105 S 9 1 0 "" NA12878 nsv517611 14 29861914 29871804 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv652506,nssv680854,nssv671344 M 2026 0 3 "" esv33189 14 29869974 30981496 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98740,essv99836 M 51 0 2 "" 21606,22086 nsv526776 14 29966225 29975382 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703128 S 2026 0 1 "" nsv522128 14 30024969 30026852 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694902 S 2026 0 1 "" nsv84475 14 30164573 30164573 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103053 M 24 "" nsv84774 14 30164681 30164681 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103352 M 24 "" nsv1230 14 30219580 30231506 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2914 S 9 1 0 "" NA18555 nsv509529 14 30220413 30244372 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623661 S 4 1 0 "" NA18994 nsv519208 14 30292044 30294776 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696697 S 2026 1 0 "" nsv832762 14 30308385 30483789 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450913 S 95 0 1 "" nsv507739 14 30344347 30350347 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623164,nssv619125,nssv620557,nssv617879 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv524779 14 30402480 30405354 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700770 S 2026 0 1 "" nsv456197 14 30456177 30487567 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533566 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01249 nsv85534 14 30466913 30468911 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv104112 M 24 "" nsv1231 14 30494353 30514472 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9182 S 9 0 1 "" NA12156 nsv1233 14 30562756 30574026 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2915 S 9 1 0 "" NA18555 nsv832763 14 30571348 30749772 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450914 S 95 0 1 "" nsv1234 14 30667888 30701839 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2916 S 9 1 0 "" NA18555 nsv7250 14 30829354 30856268 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9504 S 9 0 0 "" NA18507 nsv84542 14 30883628 30883801 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103120 M 24 "" nsv456198 14 30989479 31042040 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533567 S 1557 0 1 "" NINDS_132 nsv85102 14 31012747 31013071 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103680 M 24 "" nsv518956 14 31028512 31053122 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694292 S 2026 0 1 "" nsv522359 14 31041848 31042040 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695140 S 2026 0 1 "" nsv456199 14 31253600 31311624 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533568 S 1557 0 1 "" 1780862598_A nsv521541 14 31283103 31292992 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698157 S 2026 0 1 "" nsv520783 14 31311624 31312498 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv684019,nssv684250,nssv675386 M 2026 0 3 "" dgv130n21 14 31311624 31337074 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv521631,nsv524652 M 2026 0 2 "" nsv85392 14 31339632 31344871 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103970 M 24 "" nsv526200 14 31378262 31524123 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702463 S 2026 1 0 "" nsv519917 14 31433731 31445110 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv687024,nssv659468 M 2026 0 2 "" nsv84760 14 31470659 31470659 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103338 M 24 "" nsv519032 14 31489939 31490073 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696501 S 2026 0 1 "" nsv523667 14 31494980 31524123 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699469 S 2026 0 1 "" nsv832764 14 31634219 31792964 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450915 S 95 1 0 "" nsv85747 14 31738985 31738985 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv104325 M 24 "" nsv85243 14 31756276 31756276 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103821 M 24 "" dgv615e1 14 31928231 32086193 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv20263,essv9177,essv16725,essv20046,esv251 M 271 0 0 "" NA07048,NA12144,NA19128,NA19142 nsv9130 14 32021695 32028531 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21484,nssv21106,nssv23659,nssv23951,nssv21290,nssv26703,nssv20784,nssv19732,nssv19541,nssv21033,nssv21945,nssv24684,nssv21917,nssv22824,nssv24810,nssv24670,nssv21959 M 31 0 17 Samples from several populations that are part of the HapMap project. "" NA07048,NA10839,NA12872,NA18502,NA18504,NA18517,NA18537,NA18552,NA18563,NA18853,NA18942,NA18975,NA19132,NA19144,NA19173,NA19221,NA19240 nsv1235 14 32056278 32081275 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9183 S 9 0 1 "" NA12156 nsv832765 14 32257921 32437099 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450918,nssv1450916 M 95 1 1 "" nsv524649 14 32368121 32368179 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700615 S 2026 0 1 "" nsv507740 14 32431403 32437403 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617880 S 4 1 0 "" CHM esv33091 14 32461533 32461728 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100827 S 51 1 0 "" 21656 esv33365 14 32472690 32473813 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98714,essv100036 M 51 2 0 "" 21606,22086 nsv526902 14 32611575 32616017 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703262 S 2026 0 1 "" nsv85863 14 32616747 32618283 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv104441 M 24 "" nsv519095 14 32672711 32715773 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696569 S 2026 1 0 "" nsv516217 14 32892459 32899071 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv668290,nssv684067,nssv658536,nssv663238,nssv703567,nssv660075,nssv659740,nssv666871,nssv698534,nssv701483 M 2026 7 3 "" nsv832766 14 32940316 33082160 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450919 S 95 0 1 "" nsv832767 14 32994149 33182917 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450920 S 95 1 0 "" nsv456201 14 32999961 33103838 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533569 S 1557 1 0 "" 1780862457_A nsv456202 14 33124694 33150659 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533570 S 1557 0 1 "" 1782681093_A nsv524579 14 33153401 33154087 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700535 S 2026 0 1 "" nsv509530 14 33207817 33211866 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620999 S 4 1 0 "" NA15510 nsv507741 14 33226915 33232915 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619126 S 4 1 0 "" NA10860 nsv515964 14 33236861 33238158 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv665491,nssv659417 M 2026 2 0 "" nsv84698 14 33359800 33360138 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103276 M 24 "" nsv832768 14 33426226 33621653 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450921 S 95 1 0 "" nsv832769 14 33466497 33653496 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450922 S 95 0 1 "" nsv85160 14 33517076 33517146 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103738 M 24 "" nsv521678 14 33554863 33556490 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698297 S 2026 0 1 "" nsv85225 14 33697690 33697690 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103803 M 24 "" nsv1236 14 33777913 33811602 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1185 S 9 1 0 "" NA19240 esv33419 14 33803525 33804971 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98711 S 51 0 1 "" 21606 nsv528989 14 33814177 34068456 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705690 S 2026 1 0 "" nsv510375 14 33934016 33940016 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618401 S 4 0 1 "" CHM nsv85754 14 34022237 34025545 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv104332 M 24 "" nsv7251 14 34041445 34128539 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5496,nssv10918,nssv10917 M 9 0 0 "" NA15510,NA19129 nsv92 14 34052865 34089598 OTHER Inversion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv92 S 1 0 0 "" NA15510 nsv9131 14 34063717 34072586 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20856 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA10863 nsv9132 14 34086257 34089491 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21514 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA10839 nsv521229 14 34088925 34089518 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697858 S 2026 0 1 "" dgv131n21 14 34088925 34091641 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv517067,nsv517879,nsv520900 M 2026 0 4 "" nsv93 14 34093941 34123234 OTHER Inversion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv93 S 1 0 0 "" NA15510 nsv523334 14 34144773 34201613 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699080 S 2026 0 1 "" nsv1237 14 34170953 34199297 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5497 S 9 0 1 "" NA19129 nsv433275 14 34178637 34189727 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463156 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA19129 nsv9133 14 34181692 34195370 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23717,nssv21989,nssv24710 M 31 0 3 Samples from several populations that are part of the HapMap project. "" NA18504,NA18517,NA19173 nsv817625 14 34186040 34189727 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416128,nssv1416496,nssv1416596,nssv1418209,nssv1416595 M 112 0 5 "" NA18517,NA19140,NA19143,NA19171,NA19173 nsv516595 14 34186040 34201613 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv686945,nssv653820,nssv686218,nssv655584,nssv670041,nssv653595,nssv667563,nssv662589,nssv683641,nssv686833,nssv663470,nssv679399,nssv686337,nssv668809,nssv686490,nssv656351,nssv666416,nssv674249,nssv673784,nssv684993,nssv685870,nssv660889,nssv663124,nssv689332,nssv672809,nssv662139,nssv691472,nssv689037,nssv658123,nssv689212,nssv678269,nssv665665,nssv658711,nssv677571,nssv687722,nssv684905,nssv680698,nssv669656,nssv659418,nssv663518,nssv686865,nssv686864,nssv665221,nssv682741,nssv683777,nssv683208,nssv686705,nssv685091,nssv671119,nssv663883,nssv681328,nssv680065,nssv667519,nssv684272,nssv704265,nssv669962,nssv669238,nssv679873,nssv675281,nssv693931,nssv678092,nssv687321,nssv655300,nssv677526,nssv685200,nssv689573,nssv669501,nssv675897,nssv670508,nssv673584,nssv682591,nssv678066,nssv652774,nssv667341,nssv654951,nssv693374,nssv674971,nssv682343,nssv667120,nssv678788,nssv672917,nssv681371,nssv673393,nssv689748,nssv679854,nssv658931,nssv652595,nssv667084,nssv664945,nssv652552,nssv668666,nssv676736,nssv687259 M 2026 0 93 "" nsv438260 14 34187519 34189727 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470621,nssv470622 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA18503,NA19171 nsv1238 14 34287098 34350816 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4106,nssv2917 M 9 2 0 "" NA12878,NA18555 nsv517328 14 34299431 34304645 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv681687,nssv672105,nssv651728,nssv692647,nssv663057 M 2026 0 5 "" nsv523492 14 34299431 34312579 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699261 S 2026 0 1 "" nsv85433 14 34375042 34375372 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv104011 M 24 "" nsv85205 14 34399507 34405444 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103783 M 24 "" nsv9134 14 34498536 34502644 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21999,nssv19475 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA10847,NA12740 nsv1239 14 34547408 34592738 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2069 S 9 0 1 "" NA18555 nsv84314 14 34577467 34579273 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv102892 M 24 "" nsv1240 14 34668778 34695112 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2070 S 9 0 1 "" NA18555 nsv519458 14 34772608 34785162 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696864 S 2026 0 1 "" nsv817626 14 34772608 34785162 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416007,nssv1416004 M 112 0 2 "" NA12740,NA12751 nsv456205 14 34842691 34896121 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533571 S 1557 0 1 "" NINDS_62 nsv518090 14 34872234 34909992 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv679493,nssv663816,nssv682258,nssv698473,nssv676846,nssv685661,nssv672759,nssv684687,nssv656204,nssv674743 M 2026 1 9 "" nsv528501 14 34895187 34910429 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705106 S 2026 0 1 "" nsv525294 14 35148467 35194086 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701400 S 2026 0 1 "" nsv456206 14 35148467 35235169 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533572 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00475 nsv1241 14 35226404 35238933 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9300 S 9 1 0 "" NA18517 nsv507742 14 35330230 35336230 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620558,nssv623165 M 4 2 0 "" NA15510,NA18994 nsv84518 14 35374534 35374670 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103096 M 24 "" nsv456208 14 35457479 35500214 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533574 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00913 nsv1242 14 35469690 35520467 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2918,nssv1186 M 9 2 0 "" NA18555,NA19240 nsv509531 14 35480182 35496606 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619647 S 4 1 0 "" NA10860 nsv85401 14 35487357 35487545 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103979 M 24 "" nsv525068 14 35523092 35549578 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701122 S 2026 0 1 "" nsv528421 14 35603960 35605602 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705013 S 2026 0 1 "" nsv85090 14 35717794 35717794 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103668 M 24 "" nsv442332 14 35741780 35744784 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv83e55 14 35806100 35852700 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv34543,esv2751271 M 771 2 0 "" BEC_806,NA10830 nsv832771 14 35840758 36033792 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450923,nssv1450924 M 95 0 2 "" nsv518747 14 35856977 35879677 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696196 S 2026 0 1 "" nsv516256 14 35872483 35879677 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv690674,nssv667108 M 2026 0 2 "" dgv132n21 14 35947452 35959323 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv526831,nsv522537 M 2026 0 2 "" esv32575 14 36117380 36122409 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99877 S 51 1 0 "" 22086 nsv523551 14 36349467 36350240 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699329 S 2026 0 1 "" nsv1244 14 36355917 36380258 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6589 S 9 1 0 "" NA12156 nsv526786 14 36569655 36607103 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703138 S 2026 0 1 "" nsv507743 14 36659387 36665387 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617881,nssv623166,nssv620559,nssv619127 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv511032 14 36683211 36703968 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622405 S 4 0 0 "" NA10860 nsv507744 14 36693122 36699122 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620560,nssv623167,nssv617882 M 4 3 0 "" CHM,NA15510,NA18994 nsv832772 14 37100051 37295672 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450925 S 95 0 1 "" nsv456209 14 37625993 37654015 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533575 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00935 nsv832773 14 37682529 37854754 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450926,nssv1450927 M 95 0 2 "" nsv85762 14 37713263 37713579 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv104340 M 24 "" nsv1245 14 37755911 37788778 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1187 S 9 1 0 "" NA19240 nsv456210 14 37761320 37822503 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533576 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00137 dgv616e1 14 37858356 37874184 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv20700,esv1335 M 271 0 0 "" NA12802 nsv9135 14 37868221 37873628 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18970 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA12802 nsv510632 14 37938064 38009678 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618913 S 4 0 1 "" NA10860 nsv438261 14 37999805 38008024 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470624,nssv470623 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA18501,NA18858 nsv456211 14 38028718 38108032 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533577 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00810 nsv515869 14 38028718 38108032 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv665093,nssv663776,nssv678367 M 2026 0 3 "" esv33287 14 38074320 38074525 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv96986,essv98976,essv93685 M 51 0 3 "" 21817,21938,21972 nsv84949 14 38128923 38128972 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103527 M 24 "" nsv522416 14 38425897 38428527 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695200 S 2026 1 0 "" nsv84944 14 38527976 38528041 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103522 M 24 "" nsv85298 14 38572469 38572469 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103876 M 24 "" nsv85182 14 38572598 38572598 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103760 M 24 "" nsv85230 14 38633157 38633210 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103808 M 24 "" nsv85488 14 38701823 38703074 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv104066 M 24 "" nsv1246 14 38726348 38771271 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9184 S 9 0 1 "" NA12156 nsv84871 14 38768151 38777748 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103449 M 24 "" nsv84573 14 38816628 38816679 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103151 M 24 "" nsv832774 14 38967497 39130574 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450929 S 95 0 1 "" nsv456212 14 39027188 39166639 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533578 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00563 nsv1247 14 39040838 39074763 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4107 S 9 1 0 "" NA12878 nsv519481 14 39049504 39052879 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv690476,nssv693898,nssv656352 M 2026 0 3 "" nsv832775 14 39108486 39263310 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450930,nssv1450931 M 95 1 1 "" nsv1248 14 39108610 39153454 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9185 S 9 0 1 "" NA12156 dgv33n6 14 39168143 39169982 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv85409,nsv84450 M 24 "" nsv433529 14 39203572 39207286 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463410 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA18956 nsv832776 14 39272923 39411980 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450932 S 95 0 1 "" esv2751272 14 39286631 39982980 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6984407,essv6989953,essv6984408,essv6989427 M 771 0 1 "" BEC_704 nsv525070 14 39372627 39423507 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701124 S 2026 0 1 "" nsv518803 14 39382051 39384221 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696257 S 2026 0 1 "" nsv85496 14 39387148 39387148 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv104074 M 24 "" dgv84e55 14 39482546 39678075 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv2751274,esv2751273,esv2751275 M 771 0 3 "" BEC_126,BEC_48,SPC_4 nsv521372 14 39537500 39662131 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697981 S 2026 0 1 "" dgv133n21 14 39556095 39570844 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv517945,nsv516104 M 2026 0 3 "" nsv518754 14 39633755 39641992 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694270 S 2026 0 1 "" nsv84321 14 39662195 39662195 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv102899 M 24 "" nsv1249 14 39665369 39704787 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1188,nssv6590,nssv4108 M 9 0 3 "" NA12156,NA12878,NA19240 nsv510633 14 39670063 39705987 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617413,nssv622683,nssv620072,nssv618914 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv522184 14 39709044 39709964 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694139 S 2026 0 1 "" nsv519331 14 39744190 39746668 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv693187,nssv655468 M 2026 0 2 "" nsv524780 14 39771429 39787593 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700771 S 2026 0 1 "" nsv522380 14 39787593 39800852 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695160 S 2026 0 1 "" nsv1250 14 39807334 39839763 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10014 S 9 1 0 "" NA18956 nsv528830 14 39924782 40033911 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705504 S 2026 0 1 "" nsv1251 14 39930844 39968752 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9186 S 9 0 1 "" NA12156 nsv442333 14 39940733 39942282 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv245n27 14 39980430 40000726 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv456214,nsv456215 M 1557 0 2 "" HGDP00828,NINDS_97 nsv456216 14 39999056 40018138 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533581 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01030 nsv523349 14 40000726 40000837 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699098 S 2026 1 0 "" nsv832777 14 40026915 40224378 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450933 S 95 1 0 "" nsv456217 14 40162978 40187848 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533582 S 1557 0 1 "" NINDS_103 nsv456220 14 40203014 40206466 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533585 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01408 nsv84457 14 40209283 40209283 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103035 M 24 "" nsv456222 14 40387856 40448683 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533586 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01237 nsv456223 14 40474843 40609525 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533587 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00127 dgv134n21 14 40502100 40675306 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv523330,nsv528301 M 2026 0 2 "" nsv456224 14 40502100 41129031 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533588 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00745 nsv9137 14 40541375 40556084 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22853 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19144 nsv442334 14 40541848 40555277 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv617e1 14 40541848 40562301 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv9850,essv14668,esv1310 M 271 0 0 "" NA19144,NA19145 nsv523250 14 40581871 40641488 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698979 S 2026 0 1 "" nsv85827 14 40645367 40645367 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv104405 M 24 "" dgv618e1 14 40646835 40769154 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1427,essv24353,essv23765,essv24644,essv3916 M 271 0 0 "" NA10839,NA10846,NA11994,NA18960 nsv832778 14 40651154 40807756 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450936,nssv1450935,nssv1450934 M 95 0 3 "" dgv619e1 14 40655458 40706033 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv22609,essv18461 M 271 0 0 "" NA11832,NA12154 nsv511033 14 40672610 40754862 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622406 S 4 0 0 "" NA10860 dgv620e1 14 40676601 40706033 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv24210,essv634,essv21352,essv20717,essv17419,essv17695,essv18521,essv25043,essv21655,essv18550,essv19332,essv18033,essv2418,essv728,essv2725 M 271 0 0 "" NA06993,NA10835,NA10860,NA11993,NA12144,NA12752,NA12760,NA12761,NA12763,NA12801,NA12872,NA18940,NA18951,NA18965,NA18998 dgv621e1 14 40676601 40769154 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1812,essv23102,essv18685,essv760,essv2909,essv23290,essv4310,essv20477,essv24170,essv1652,essv5679,essv21914,essv6478,essv24314,essv20842,essv23743,essv22251,essv24109,essv19796,essv23715,essv20546,essv6441,essv7471,essv5950,essv22706,essv936,essv2122 M 271 0 0 "" NA07048,NA10838,NA11829,NA11882,NA11992,NA11995,NA12004,NA12006,NA12043,NA12056,NA12249,NA12740,NA12751,NA12813,NA12864,NA18564,NA18577,NA18592,NA18605,NA18633,NA18636,NA18949,NA18959,NA18961,NA18971,NA19003,NA19007 nsv9138 14 40678078 40739687 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21093,nssv21116,nssv21544,nssv19571,nssv21378,nssv22029 M 31 0 6 Samples from several populations that are part of the HapMap project. "" NA07048,NA10839,NA12740,NA12872,NA18564,NA19007 esv33981 14 40680006 40739688 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98874,essv96828,essv95214,essv98304,essv97043,essv93007,essv99038,essv92975,essv96082,essv96723,essv98609,essv96002,essv98028,essv96448,essv100405 M 51 0 15 "" 21606,21659,21721,21772,21817,21863,21938,21939,22007,22011,22085,22127,22259,22261,22300 nsv442683 14 40680246 40727099 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv1252 14 40739788 40785386 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6591 S 9 0 1 "" NA12156 nsv518766 14 40755865 40764763 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696215 S 2026 0 1 "" nsv519067 14 40779461 40796955 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694303 S 2026 0 1 "" dgv135n21 14 40828058 40836194 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv527074,nsv528669 M 2026 0 2 "" dgv622e1 14 40836311 40950477 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1040,essv8554 M 271 0 0 "" NA18503 nsv518804 14 40860924 40883002 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696258 S 2026 0 1 "" nsv510376 14 40861475 40867475 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621413 S 4 0 1 "" NA15510 nsv442336 14 40885215 40927856 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv9139 14 40891793 40898351 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21146,nssv22238,nssv19792,nssv20814,nssv24696,nssv26744,nssv24835 M 31 0 7 Samples from several populations that are part of the HapMap project. "" NA12155,NA18502,NA18942,NA18975,NA19007,NA19132,NA19221 nsv1253 14 40903755 40937956 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9188 S 9 1 0 "" NA12156 nsv522485 14 40939980 40941625 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705852 S 2026 0 1 "" nsv456226 14 40939980 40978334 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533589 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00775 nsv456227 14 40973264 41017578 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533590 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00766 nsv84826 14 41021613 41021678 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103404 M 24 "" nsv85814 14 41021680 41021745 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv104392 M 24 "" dgv623e1 14 41115623 41329261 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv354,essv2544 M 271 0 0 "" NA19003 nsv510377 14 41270301 41276301 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624160 S 4 0 1 "" NA18994 nsv522059 14 41537347 41547006 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694830 S 2026 0 1 "" nsv85197 14 41556086 41556400 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103775 M 24 "" nsv526260 14 41567781 41742160 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702532 S 2026 1 0 "" nsv832779 14 41577260 41758651 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450937 S 95 1 0 "" dgv246n27 14 41767756 41789491 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv456229,nsv456228 M 1557 2 0 "" HGDP00561,HGDP00591 nsv456231 14 41829855 41895862 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533594 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01188 nsv526503 14 41907247 41907455 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702813 S 2026 0 1 "" dgv624e1 14 41920404 42044446 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1069,essv5878 M 271 0 0 "" NA18562,NA18990 dgv625e1 14 41920404 42078579 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2618,esv649 M 271 0 0 "" NA18990 nsv517862 14 41924173 41926726 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695266 S 2026 0 1 "" nsv521740 14 41924173 41980434 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694093 S 2026 0 1 "" nsv442337 14 41936937 42030401 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv85e55 14 41940713 42022300 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv34833,esv34406 M 771 0 2 "" NA18562,NA18990 nsv85072 14 41948896 41948976 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103650 M 24 "" nsv85330 14 41949097 41949150 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103908 M 24 "" nsv456232 14 41977197 42041592 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533595 S 1557 0 1 "" NINDS_249 nsv528376 14 41977197 42043772 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704963 S 2026 0 1 "" nsv9140 14 41982609 41990426 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24860,nssv19601,nssv21123,nssv24722 M 31 0 4 Samples from several populations that are part of the HapMap project. "" NA07048,NA12872,NA18502,NA19132 nsv9141 14 42056485 42064286 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24736,nssv25203,nssv21574,nssv21153,nssv19505,nssv21595,nssv20886,nssv22019,nssv24915,nssv22207,nssv19822,nssv23744,nssv20252,nssv22882,nssv21176,nssv22268,nssv21320,nssv21975,nssv24718,nssv19631,nssv20844 M 31 21 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10847,NA10863,NA11830,NA12155,NA12872,NA18502,NA18504,NA18517,NA18537,NA18853,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19144,NA19173 nsv817627 14 42201461 42216945 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417933 S 112 1 0 "" NA18852 nsv518127 14 42232493 42275395 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695545 S 2026 0 1 "" nsv456233 14 42257726 42273669 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533596 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00647 nsv832780 14 42380420 42566709 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450938 S 95 1 0 "" dgv136n21 14 42402820 42405334 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv523807,nsv527621 M 2026 0 2 "" nsv519996 14 42414308 42420358 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697168 S 2026 0 1 "" nsv523273 14 42428932 42434852 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699007 S 2026 0 1 "" nsv527004 14 42461857 42625539 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703379 S 2026 1 0 "" nsv832782 14 42540120 42689860 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450940 S 95 1 0 "" nsv1255 14 42577447 42615523 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9189 S 9 0 1 "" NA12156 esv2422268 14 42652665 43191104 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161517 S 181 1 0 "" ND01525 nsv442338 14 42665709 42669587 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv524097 14 42692502 42701235 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699971 S 2026 0 1 "" nsv817628 14 42760839 42790820 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418506,nssv1418507 M 112 0 2 "" NA19193,NA19194 nsv527121 14 42843401 42897456 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703504 S 2026 1 0 "" dgv247n27 14 42861687 42877334 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv456240,nsv456242 M 1557 2 0 "" HGDP01269,HGDP01276 nsv456243 14 42861687 42892349 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533600 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01272 nsv515592 14 42861687 43318929 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv670998,nssv664025,nssv677373,nssv687811,nssv658473,nssv685480,nssv660406,nssv689199,nssv659981,nssv704217 M 2026 9 1 "" dgv248n27 14 42876057 43317491 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv456246,nsv456247,nsv456244,nsv456245 M 1557 4 0 "" 1780854533_A,1780862300_A,HGDP01172,NINDS_9 esv2751276 14 42878100 43325561 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6981363,essv6981364,essv6985562,essv6985563 M 771 1 0 "" BEC_395 nsv456250 14 42946645 43023565 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533605 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01266 nsv84786 14 42969200 42969282 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103364 M 24 "" nsv85592 14 42969260 42969342 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv104170 M 24 "" nsv456251 14 43015281 43064535 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533606 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00143 nsv832783 14 43129562 43288541 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450941 S 95 1 0 "" nsv832784 14 43206892 43322356 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450942,nssv1450943 M 95 2 0 "" nsv456254 14 43274321 44062009 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533608 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00954 dgv626e1 14 43468955 43714231 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv4377,essv6118,essv7091,essv2607,esv719,essv4710,essv6238,essv7723,essv2884 M 271 0 0 "" NA18532,NA18537,NA18573,NA18622,NA18633,NA18636,NA18953,NA18990 nsv9142 14 43483826 43486443 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21604 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA10839 nsv456255 14 43490337 43524894 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533609 S 1557 0 1 "" 1780854599_A nsv456256 14 43514868 43704391 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533610 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01036 dgv249n27 14 43556093 43609467 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv456258,nsv456257,nsv456259 M 1557 0 3 "" 1780862404_A,HGDP00711,HGDP00781 dgv627e1 14 43558078 43606626 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv6489,essv6440,essv3832 M 271 0 0 "" NA18592,NA18636,NA18953 dgv628e1 14 43570867 43600178 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv5981,essv4343,essv7505 M 271 0 0 "" NA18532,NA18552,NA18622 dgv629e1 14 43570867 43608847 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv4937,essv6098,essv7475,essv702,essv1082 M 271 0 0 "" NA18537,NA18573,NA18633,NA18940,NA18990 nsv9143 14 43571042 43606069 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22005,nssv21136 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18537,NA18552 nsv442685 14 43571678 43600205 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv250n27 14 43575763 43600472 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv456260,nsv456261 M 1557 0 2 "" 1780862160_A,HGDP00708 nsv515917 14 43575763 43600472 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv674702,nssv665306,nssv687931,nssv688444,nssv657475,nssv680392,nssv661037,nssv676445 M 2026 0 8 "" nsv817630 14 43575763 43600472 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417443,nssv1417119 M 112 0 2 "" NA18537,NA18953 nsv527306 14 43639825 43640545 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703726 S 2026 0 1 "" nsv523830 14 43648225 43656614 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699661 S 2026 1 0 "" nsv442339 14 43688705 43691381 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv510634 14 43721748 43780124 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618915 S 4 0 1 "" NA10860 esv2422320 14 43744365 43863188 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161338 S 181 1 0 "" ND04498 nsv1256 14 43762662 43795865 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9190 S 9 1 0 "" NA12156 nsv511034 14 43780124 43820150 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618624 S 4 0 0 "" CHM nsv516337 14 43885737 44000644 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702032,nssv662599,nssv700985,nssv682921,nssv667676 M 2026 4 1 "" dgv251n27 14 43889940 44018211 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv456271,nsv456265,nsv456264,nsv456267 M 1557 4 0 "" HGDP00802,HGDP01263,HGDP01305,NINDS_256 nsv511036 14 43890292 43935940 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624346 S 4 0 0 "" NA18994 esv2751277 14 43894624 44004257 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6983220,essv6986374 M 771 1 0 "" BEC_557 nsv456272 14 43906815 43983784 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533621 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00155 nsv1257 14 43954142 43986097 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1189 S 9 1 0 "" NA19240 nsv456273 14 44020636 44076228 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533622 S 1557 0 1 "" 1780854464_A dgv10e196 14 44102541 44178616 CNV Deletion Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array esv2422199,esv2422363 M 181 0 2 "" ND01583,ND02258 nsv522788 14 44113678 44135783 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698432 S 2026 0 1 "" dgv630e1 14 44127583 44383416 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv754,essv21133 M 271 0 0 "" NA12815 nsv517384 14 44130367 44320168 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv660174,nssv681906,nssv693431,nssv702630,nssv669172,nssv671146,nssv666920,nssv668077,nssv655469,nssv674528,nssv651867,nssv683397,nssv705941,nssv686927 M 2026 0 14 "" dgv252n27 14 44154542 44271294 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv456275,nsv456276 M 1557 0 2 "" 1780862584_A,1798860587_A essv22024 14 44239152 44324634 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12815 esv33647 14 44251850 44292321 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv96778,essv100037 M 51 0 2 "" 21659,22086 dgv253n27 14 44254784 44278526 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv456280,nsv456279,nsv456278 M 1557 0 3 "" 1780862226_A,1798860565_A,NINDS_39 nsv1258 14 44410479 44443096 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5498 S 9 1 0 "" NA19129 nsv1259 14 44489073 44514410 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9191 S 9 0 1 "" NA12156 nsv1260 14 44527416 44572421 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9192 S 9 0 1 "" NA12156 nsv832785 14 44590420 44780491 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450944 S 95 0 1 "" dgv631e1 14 44775832 45052160 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv10891,esv684 M 271 0 0 "" NA19209 nsv527140 14 44817996 44853296 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703528 S 2026 0 1 "" nsv456281 14 44839108 44977742 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533629 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00920 nsv85697 14 44855037 44855099 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv104275 M 24 "" nsv516970 14 44867532 45064383 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv653535,nssv674084,nssv693660,nssv654471,nssv679992,nssv673532,nssv689259,nssv668810,nssv680739,nssv702850,nssv665409,nssv682592,nssv687442,nssv686760,nssv663519,nssv670418,nssv671470,nssv659710,nssv672068 M 2026 0 19 "" dgv632e1 14 44871455 45052160 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv7917,essv8703,essv8914,essv10857,essv8024 M 271 0 0 "" NA18871,NA19200,NA19209 nsv442340 14 44895806 45085468 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv86e55 14 44898979 45041032 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv34429,esv34988 M 771 0 2 "" NA18871,NA19209 esv2422441 14 44918600 45395434 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161349 S 181 1 0 "" ND03123 nsv1261 14 44975886 44980488 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9193 S 9 1 0 "" NA12156 nsv1262 14 44998235 45042672 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4633 S 9 0 1 "" NA19129 nsv456282 14 45094425 45528446 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533630 S 1557 1 0 "" NINDS_136 dgv633e1 14 45120624 45190488 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv7919,esv1207 M 271 0 0 "" NA19209 nsv9144 14 45139773 45147481 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21947,nssv21166 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA18552,NA18563 nsv456283 14 45217191 45250710 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533631 S 1557 0 1 "" 1780854117_A nsv518816 14 45287399 45478093 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696269 S 2026 1 0 "" nsv832786 14 45348803 45497527 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450948,nssv1450947,nssv1450945,nssv1450946 M 95 4 0 "" nsv456284 14 45417055 45474925 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533632 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01098 nsv516946 14 45431634 45723621 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv677124,nssv653596,nssv664121,nssv675162,nssv696827,nssv676320,nssv679111,nssv686201,nssv661900,nssv687322,nssv686639,nssv665094,nssv660536,nssv660928,nssv664160,nssv696229,nssv702268,nssv651936,nssv687172,nssv681390,nssv653389,nssv660380,nssv668811,nssv678368,nssv690796,nssv674020,nssv663777,nssv705691,nssv675334,nssv684020,nssv689213,nssv653482,nssv670042,nssv700882,nssv685291 M 2026 0 35 "" dgv254n27 14 45528446 45642242 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv456287,nsv456286 M 1557 0 2 "" 1780854302_A,HGDP00070 nsv85008 14 45550219 45550275 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103586 M 24 "" nsv456288 14 45601722 45869740 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533636 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01416 nsv456290 14 45656533 45729224 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533637 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00125 nsv817631 14 45671842 45677824 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416139,nssv1416868 M 112 0 2 "" NA19140,NA19239 nsv456291 14 45742385 45829318 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533638 S 1557 0 1 "" NINDS_114 esv2751278 14 45788000 46295641 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6985771,essv6985770,essv6985772,essv6985773,essv6987254 M 771 1 0 "" SPC_43 nsv525044 14 45802088 45846959 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701088 S 2026 0 1 "" nsv517763 14 45820357 45829318 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv653152,nssv661511,nssv668228,nssv693544,nssv659084,nssv673989,nssv661599,nssv679559,nssv685556,nssv670908,nssv655326,nssv662620,nssv678453,nssv670309,nssv686309 M 2026 0 15 "" nsv518556 14 45846959 45865526 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695999 S 2026 0 1 "" nsv832787 14 45849446 46005186 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450951,nssv1450949 M 95 1 1 "" dgv634e1 14 45863402 46018276 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv3056,esv248 M 271 0 0 "" NA18981 nsv511037 14 45874254 45892002 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618673 S 4 0 0 "" CHM nsv1263 14 45880874 45908320 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6592 S 9 1 0 "" NA12156 nsv509532 14 45892002 45892002 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621000 S 4 1 0 "" NA15510 nsv520141 14 45918391 45943526 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv681460,nssv686351,nssv661142 M 2026 0 3 "" nsv1264 14 45980155 45998516 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9505 S 9 1 0 "" NA18507 nsv9145 14 46003423 46005888 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22059,nssv21625 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA12740,NA18980 nsv517764 14 46152755 46489617 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694930,nssv661651,nssv696911,nssv653154 M 2026 0 4 "" nsv507745 14 46274864 46280864 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623168,nssv619128,nssv617883,nssv620561 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv817632 14 46317149 46436090 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416395 S 112 0 1 "" NA18855 nsv456294 14 46323755 46465551 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533639 S 1557 0 1 "" NINDS_95 nsv832788 14 46327063 46462626 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450952 S 95 1 0 "" dgv255n27 14 46403821 46474814 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv456298,nsv456297 M 1557 0 2 "" HGDP00580,HGDP00741 nsv456299 14 46522803 46571091 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533643 S 1557 0 1 "" NINDS_127 nsv456300 14 46550000 46580516 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533644 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00472 nsv507746 14 46585399 46591399 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620562,nssv623169 M 4 2 0 "" NA15510,NA18994 nsv456301 14 46659144 46720671 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533645 S 1557 0 1 "" NINDS_178 nsv515585 14 46709025 46722971 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv661999,nssv686310,nssv693188,nssv651875 M 2026 2 2 "" nsv456302 14 46720671 46785371 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533646 S 1557 0 1 "" 1798860114_A nsv517616 14 46744261 46747936 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv652685,nssv652528,nssv685940,nssv660087,nssv669473,nssv663982,nssv685794,nssv660989,nssv661576,nssv654608,nssv679824,nssv656932,nssv684863,nssv684472,nssv704375,nssv661440,nssv677403,nssv687103,nssv679294,nssv670630,nssv684969,nssv664650,nssv654355,nssv656726,nssv683126,nssv678927,nssv697210 M 2026 0 27 "" nsv456303 14 46778147 46785371 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533647 S 1557 0 1 "" 1782681247_A nsv517301 14 46778147 46785371 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv680667,nssv657219,nssv669424,nssv685531,nssv656327,nssv681299,nssv667840,nssv661857,nssv667706,nssv685635,nssv676337,nssv654254,nssv667378,nssv675521,nssv657635,nssv664104,nssv660752,nssv669795,nssv657476,nssv677692,nssv661120,nssv673844,nssv661197,nssv664454,nssv654992,nssv661978,nssv676375,nssv655258,nssv656159,nssv680644,nssv663641,nssv670585,nssv689236,nssv683974,nssv674195,nssv655029,nssv669900,nssv654801,nssv684882,nssv681329,nssv682318,nssv670283,nssv673048,nssv658593,nssv663941 M 2026 0 45 "" nsv510378 14 46780233 46786233 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618402,nssv622248 M 4 0 2 "" CHM,NA10860 nsv525101 14 46800704 46816730 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701160 S 2026 0 1 "" nsv1266 14 46829209 46853173 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10015 S 9 1 0 "" NA18956 nsv456304 14 47241080 47267409 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533648 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01368 nsv456305 14 47314308 47347072 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533649 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00244 nsv515689 14 47319952 47347072 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704807,nssv693778,nssv703947,nssv673158,nssv664426,nssv692818 M 2026 0 6 "" dgv635e1 14 47329907 47516073 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv305,essv15123 M 271 0 0 "" NA19129 nsv518404 14 47350032 47488909 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695835 S 2026 1 0 "" nsv9146 14 47364221 47374206 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25228,nssv22237,nssv22911 M 31 0 3 Samples from several populations that are part of the HapMap project. "" NA11830,NA18860,NA19144 nsv456306 14 47376530 47416278 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533650 S 1557 1 0 "" 1780854205_A nsv9148 14 47402773 47404341 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19459 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18572 nsv85272 14 47403992 47404306 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103850 M 24 "" nsv516947 14 47449151 47472679 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv672308,nssv653483,nssv668542,nssv684952,nssv687131 M 2026 3 2 "" dgv256n27 14 47535588 47581101 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv456309,nsv456310,nsv456308 M 1557 3 0 "" HGDP00711,HGDP00717,HGDP01323 nsv817633 14 47536798 47544577 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416396 S 112 0 1 "" NA18855 nsv456311 14 47536798 47548946 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533655 S 1557 0 1 "" 1780862432_A nsv832789 14 47542813 47733217 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450953,nssv1450954,nssv1450955 M 95 2 1 "" nsv456312 14 47645873 47654294 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533656 S 1557 0 1 "" NINDS_27 nsv84804 14 47651906 47651906 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103382 M 24 "" nsv526566 14 47654294 47659065 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702882 S 2026 0 1 "" nsv507747 14 47727685 47733685 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619129 S 4 1 0 "" NA10860 nsv516268 14 47760979 47771144 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv667197,nssv657531,nssv660269,nssv676893 M 2026 0 4 "" nsv520033 14 47841003 47974651 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv690305,nssv686674,nssv674529,nssv660175,nssv675053,nssv691327 M 2026 0 6 "" nsv456313 14 47866053 47938359 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533657 S 1557 0 1 "" 1780854459_A nsv510635 14 47897624 47948339 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618916 S 4 0 1 "" NA10860 nsv832790 14 47910733 48111551 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450956 S 95 1 0 "" nsv1267 14 47941025 47973150 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4109 S 9 1 0 "" NA12878 nsv456314 14 47959934 48006869 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533658 S 1557 0 1 "" 1782681262_A nsv523715 14 47990636 48037957 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699528 S 2026 0 1 "" nsv832791 14 48048657 48268288 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450957 S 95 1 0 "" nsv526681 14 48118971 48121413 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703013 S 2026 0 1 "" nsv522915 14 48154747 48204884 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698576 S 2026 0 1 "" nsv524828 14 48170525 48171583 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700829 S 2026 0 1 "" nsv525367 14 48170525 48299717 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701487 S 2026 0 1 "" nsv518909 14 48387799 48394697 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696369 S 2026 0 1 "" nsv521158 14 48553574 48559139 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697819 S 2026 0 1 "" nsv510379 14 48556521 48562521 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624161,nssv618403 M 4 0 2 "" CHM,NA18994 nsv84479 14 48592539 48602132 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103057 M 24 "" nsv1268 14 48795279 48808478 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9194 S 9 0 1 "" NA12156 nsv522381 14 48882548 48899459 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695161 S 2026 1 0 "" nsv84754 14 49028207 49028352 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103332 M 24 "" nsv1269 14 49280773 49316621 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9956,nssv4110,nssv2071,nssv1190,nssv5500 M 9 5 0 "" NA12878,NA18507,NA18555,NA19129,NA19240 nsv509533 14 49281138 49321554 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621001,nssv623662,nssv619648,nssv618105 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv1270 14 49503197 49534627 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5501 S 9 1 0 "" NA19129 nsv1271 14 49639873 49641982 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6593 S 9 1 0 "" NA12156 nsv832793 14 49830713 50007325 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450958 S 95 0 1 "" nsv1272 14 49926204 49929681 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2072 S 9 1 0 "" NA18555 nsv1273 14 50102314 50147748 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6594 S 9 0 1 "" NA12156 nsv1274 14 50107353 50140808 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5502 S 9 1 0 "" NA19129 nsv832794 14 50276383 50496359 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450959 S 95 1 0 "" esv33577 14 50478705 50488188 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv94823 S 51 1 0 "" 21791 nsv437172 14 50501704 50505210 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467053 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA10860 nsv84409 14 50589980 50590297 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv102987 M 24 "" nsv1275 14 50827429 50861329 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1191 S 9 1 0 "" NA19240 nsv526155 14 50832439 50833031 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702414 S 2026 0 1 "" nsv520336 14 50832439 50835322 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697355 S 2026 0 1 "" nsv522702 14 50832439 50864166 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv706113 S 2026 0 1 "" nsv456316 14 50832439 50865173 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533659 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00805 nsv526511 14 50832999 50837158 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702821 S 2026 0 1 "" nsv510380 14 50957994 50963994 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622249 S 4 0 1 "" NA10860 nsv528274 14 51097980 51108156 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704843 S 2026 0 1 "" nsv1277 14 51113794 51131043 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1192 S 9 1 0 "" NA19240 nsv528065 14 51128813 51137210 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704601 S 2026 0 1 "" nsv526899 14 51172942 51175564 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703258 S 2026 0 1 "" nsv456317 14 51339481 51404339 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533660 S 1557 0 1 "" 1780862304_A nsv525537 14 51380094 51384867 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701672 S 2026 1 0 "" dgv35n6 14 51474083 51474220 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv85349,nsv85231 M 24 "" nsv7252 14 51484303 51490235 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4112 S 9 0 0 "" NA12878 nsv85620 14 51558677 51558677 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv104198 M 24 "" nsv509534 14 51709171 51744428 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623663,nssv621002 M 4 2 0 "" NA15510,NA18994 nsv1278 14 51732398 51758309 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1193 S 9 1 0 "" NA19240 nsv832795 14 51766983 51964738 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450960 S 95 1 0 "" nsv84324 14 51826549 51826879 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv102902 M 24 "" nsv527685 14 51892215 51897364 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704161 S 2026 1 0 "" nsv528023 14 51897364 51899472 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704552 S 2026 0 1 "" nsv832796 14 52216626 52396650 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450963 S 95 0 1 "" nsv1279 14 52291321 52324939 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1194 S 9 1 0 "" NA19240 nsv832797 14 52469321 52650444 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450964 S 95 1 0 "" nsv832798 14 52725081 52911798 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450965,nssv1450966 M 95 1 1 "" nsv84900 14 52726577 52726577 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103478 M 24 "" nsv521381 14 52810756 52833496 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697990 S 2026 1 0 "" nsv522094 14 52810756 52833496 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694866 S 2026 0 1 "" nsv507748 14 52858438 52864438 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620563 S 4 1 0 "" NA15510 esv34651 14 52872802 52890800 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6978284,essv6989012,essv6987365 M 771 0 1 "" NA18997 dgv636e1 14 52872802 52890807 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1582,esv1070 M 271 0 0 "" NA18997 nsv84915 14 52884457 52884457 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103493 M 24 "" nsv527977 14 52989928 53008870 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704492 S 2026 0 1 "" nsv1280 14 53081740 53126551 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9196 S 9 0 1 "" NA12156 nsv832799 14 53156747 53212308 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450971,nssv1450969,nssv1450970,nssv1450967,nssv1450972,nssv1450968,nssv1450974,nssv1450976,nssv1450983,nssv1450980,nssv1450977,nssv1450979,nssv1450978,nssv1450982,nssv1450981,nssv1450975 M 95 0 16 "" nsv1281 14 53392198 53425781 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9197 S 9 1 0 "" NA12156 nsv507749 14 53422319 53428319 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617884,nssv620564 M 4 2 0 "" CHM,NA15510 nsv832800 14 53626221 53827734 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450985 S 95 1 0 "" nsv507750 14 53638945 53644945 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620565,nssv623170,nssv617885 M 4 3 0 "" CHM,NA15510,NA18994 nsv510636 14 53749253 53832947 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620073 S 4 0 1 "" NA15510 dgv637e1 14 53759574 53803592 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv22619,esv1284 M 271 0 0 "" NA12154 nsv9149 14 53779833 53783921 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22267,nssv21183,nssv20282,nssv22298,nssv22119 M 31 0 5 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA11830,NA12155,NA12740 nsv84680 14 53780097 53783435 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103258 M 24 "" nsv832801 14 53791765 53956523 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450986 S 95 1 0 "" nsv832802 14 53961804 54105017 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450987 S 95 0 1 "" nsv1282 14 54224357 54240815 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9506 S 9 1 0 "" NA18507 nsv84529 14 54582531 54587481 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103107 M 24 "" nsv84773 14 54874539 54876872 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103351 M 24 "" nsv518706 14 55014365 55016370 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696157 S 2026 0 1 "" nsv832804 14 55153603 55347385 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450988 S 95 1 0 "" nsv1283 14 55189812 55234482 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9198 S 9 0 1 "" NA12156 nsv1284 14 55449693 55483117 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4113 S 9 1 0 "" NA12878 nsv519022 14 55450960 55452482 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694069 S 2026 0 1 "" nsv519617 14 55690705 55694176 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696953 S 2026 1 0 "" nsv1285 14 55922905 55967610 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9199 S 9 0 1 "" NA12156 nsv1286 14 55946156 55957238 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4114 S 9 1 0 "" NA12878 nsv84505 14 56012041 56012094 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103083 M 24 "" nsv84975 14 56100912 56101273 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103553 M 24 "" nsv456319 14 56250467 56266008 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533662 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00158 nsv1288 14 56365693 56411420 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6595 S 9 0 1 "" NA12156 nsv510381 14 56385531 56391531 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618404 S 4 0 1 "" CHM nsv507751 14 56442386 56448386 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617886 S 4 1 0 "" CHM nsv519759 14 56461434 56469542 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv658224,nssv659711 M 2026 0 2 "" nsv832805 14 56502796 56678595 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450989,nssv1450990 M 95 2 0 "" nsv817634 14 56689717 56695310 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417934 S 112 0 1 "" NA18853 nsv832806 14 56821432 57024750 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450991 S 95 0 1 "" nsv1289 14 57115782 57127001 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9200 S 9 0 1 "" NA12156 nsv515859 14 57193327 57194563 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv665038,nssv690323,nssv683259 M 2026 0 3 "" nsv526016 14 57193327 57195940 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702246 S 2026 0 1 "" nsv528158 14 57194563 57195940 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704706 S 2026 0 1 "" nsv517592 14 57203459 57211736 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv652458,nssv679584,nssv658187,nssv661634,nssv666894,nssv688445,nssv689574,nssv684642,nssv655082,nssv662194,nssv657784,nssv699312,nssv667395,nssv659712,nssv679193,nssv669373,nssv680880,nssv681300 M 2026 0 18 "" nsv84976 14 57474027 57474082 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103554 M 24 "" nsv84702 14 57494944 57495023 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103280 M 24 "" nsv507752 14 57570655 57576655 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620566 S 4 1 0 "" NA15510 nsv510382 14 58138877 58144877 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618405 S 4 0 1 "" CHM nsv526700 14 58149738 58165993 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703039 S 2026 0 1 "" nsv832807 14 58196470 58381772 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450992,nssv1450996,nssv1450994,nssv1450993 M 95 4 0 "" nsv1290 14 58229435 58255202 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5503 S 9 1 0 "" NA19129 nsv832808 14 58281160 58313817 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450997 S 95 0 1 "" nsv1291 14 58282348 58315605 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2073,nssv6596,nssv4115,nssv10016 M 9 4 0 "" NA12156,NA12878,NA18555,NA18956 nsv509536 14 58285695 58308943 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618106 S 4 1 0 "" CHM nsv817635 14 58469320 58470271 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417682 S 112 0 1 "" NA18999 nsv85013 14 58594599 58594767 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103591 M 24 "" nsv832809 14 58599162 58757252 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450998 S 95 1 0 "" nsv85082 14 58615067 58615373 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103660 M 24 "" nsv507753 14 58808658 58814658 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617887 S 4 1 0 "" CHM nsv85457 14 58848010 58848074 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv104035 M 24 "" nsv527284 14 58848014 58851397 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703696 S 2026 0 1 "" nsv832810 14 58853922 59014660 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1450999 S 95 0 1 "" nsv832811 14 59177289 59327029 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451000 S 95 0 1 "" nsv1292 14 59311273 59343848 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2074 S 9 1 0 "" NA18555 dgv638e1 14 59477247 59652794 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv591,essv6025 M 271 0 0 "" NA18571 esv34890 14 59496500 59545703 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6988196,essv6979552,essv6979553 M 771 0 1 "" NA18571 essv5002 14 59496524 59545703 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18571 nsv9150 14 59539381 59549327 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26755,nssv21196 M 31 1 1 Samples from several populations that are part of the HapMap project. "" NA18552,NA19221 nsv1293 14 59695263 59728072 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1196 S 9 1 0 "" NA19240 nsv832812 14 59765206 59948452 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451001 S 95 0 1 "" nsv1294 14 59948897 59993954 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9201 S 9 0 1 "" NA12156 nsv7253 14 60104536 60148445 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1197 S 9 0 0 "" NA19240 nsv1295 14 60185591 60230447 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9202 S 9 0 1 "" NA12156 nsv510637 14 60440874 60453896 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620074,nssv622685 M 4 0 2 "" NA15510,NA18994 nsv507754 14 60442136 60448136 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617888 S 4 1 0 "" CHM nsv517884 14 60662379 60683259 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695293 S 2026 1 0 "" nsv526595 14 60683259 60684493 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702914 S 2026 0 1 "" nsv520019 14 60693823 60695870 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697180 S 2026 0 1 "" nsv1296 14 60707472 60741369 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4116 S 9 1 0 "" NA12878 nsv85177 14 60725060 60725185 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103755 M 24 "" nsv1297 14 60901608 60922424 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2075 S 9 1 0 "" NA18555 nsv442341 14 60901611 60909127 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv517729 14 60904009 60905153 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv675883,nssv651676,nssv667085,nssv662759,nssv657296,nssv663170 M 2026 0 6 "" nsv517477 14 61035122 61054437 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv685201,nssv667145,nssv667363,nssv652135,nssv670509,nssv686491,nssv671045,nssv675631,nssv658225,nssv658247,nssv659832,nssv665625,nssv692029,nssv676321,nssv688045,nssv680039 M 2026 0 16 "" nsv1300 14 61274257 61318961 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9203 S 9 0 1 "" NA12156 nsv1301 14 61320316 61354694 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2919 S 9 1 0 "" NA18555 nsv1302 14 61354579 61399295 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9204 S 9 0 1 "" NA12156 nsv517886 14 61454930 61467198 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695294 S 2026 1 0 "" nsv1303 14 61518726 61553465 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1198 S 9 1 0 "" NA19240 nsv456321 14 61632399 61655706 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533663 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01418 esv2422467 14 61642463 61804085 CNV Deletion Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161436 S 181 0 1 "" ND03096 nsv442342 14 61725259 61734091 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv521562 14 61791315 61792989 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698177 S 2026 0 1 "" nsv832813 14 61826973 62040058 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451002 S 95 1 0 "" nsv456322 14 61833100 61875913 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533664 S 1557 0 1 "" NINDS_228 nsv525623 14 62038148 62038417 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701771 S 2026 0 1 "" nsv523444 14 62078824 62169922 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699200 S 2026 1 0 "" nsv517094 14 62131673 62133750 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv677864,nssv658064,nssv670644,nssv684222,nssv686529,nssv663471,nssv669502,nssv662163,nssv685349,nssv671471,nssv658209,nssv684688,nssv691869,nssv676173,nssv654566,nssv692117,nssv690098,nssv669707,nssv657785,nssv661743,nssv687517,nssv692705,nssv653776,nssv653856,nssv666205,nssv680425,nssv657274,nssv680507,nssv669925,nssv669657 M 2026 0 30 "" nsv507755 14 62150783 62156783 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619130 S 4 1 0 "" NA10860 nsv527675 14 62238300 62281033 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704150 S 2026 1 0 "" nsv507756 14 62283755 62289755 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619131,nssv617889,nssv620567,nssv623171 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 dgv137n21 14 62470539 63226870 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv527251,nsv520528 M 2026 2 0 "" nsv1304 14 62660407 62704746 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2076 S 9 0 1 "" NA18555 nsv516899 14 62804252 62822831 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv654751,nssv684799 M 2026 0 2 "" nsv521404 14 62810866 62827859 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698014 S 2026 0 1 "" nsv832815 14 62819811 62983653 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451003 S 95 1 0 "" dgv87e55 14 62824116 62941169 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv2751279,esv2751280,esv2751281 M 771 3 0 "" BEC_316,BEC_335,BEC_560 nsv519574 14 62837564 62927561 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv682432,nssv674276,nssv656933,nssv663394,nssv682639,nssv677725 M 2026 6 0 "" dgv257n27 14 62845437 62927561 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv456324,nsv456325 M 1557 2 0 "" 1780854257_A,1780862274_A dgv88e55 14 62848864 62925328 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv2751284,esv2751283,esv2751282 M 771 3 0 "" BEC_330,BEC_636,BEC_727 nsv84684 14 62856933 62857264 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103262 M 24 "" nsv528691 14 63138559 63168308 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705334 S 2026 1 0 "" nsv507757 14 63274942 63280942 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620568 S 4 1 0 "" NA15510 nsv85616 14 63283914 63284732 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv104194 M 24 "" nsv509537 14 63312488 63364285 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619649,nssv623664,nssv621003 M 4 3 0 "" NA10860,NA15510,NA18994 nsv1305 14 63312676 63353169 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1199,nssv10017,nssv5504,nssv4117 M 9 4 0 "" NA12878,NA18956,NA19129,NA19240 nsv1306 14 63471060 63504417 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1200 S 9 1 0 "" NA19240 nsv507758 14 63489900 63495900 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620569 S 4 1 0 "" NA15510 nsv456326 14 63490166 63824114 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533667 S 1557 1 0 "" 1780854492_A nsv524908 14 63769798 63773346 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700919 S 2026 1 0 "" nsv1307 14 63811790 63857068 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9205 S 9 0 1 "" NA12156 nsv84862 14 63883695 63888290 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103440 M 24 "" nsv521823 14 64039095 64065447 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694595 S 2026 0 1 "" nsv1308 14 64070693 64102391 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9206 S 9 1 0 "" NA12156 nsv442343 14 64085406 64089282 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv84526 14 64207606 64207606 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103104 M 24 "" nsv1309 14 64218080 64251403 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5505 S 9 1 0 "" NA19129 nsv519823 14 64299812 64311686 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697069 S 2026 0 1 "" dgv639e1 14 64324218 64341533 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv8271,esv926 M 271 0 0 "" NA19153 nsv516768 14 64347643 64349697 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv670712,nssv656917 M 2026 2 0 "" nsv521286 14 64347643 64351697 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697888 S 2026 0 1 "" nsv516238 14 64397041 64428329 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv692960,nssv666992 M 2026 2 0 "" nsv1311 14 64422475 64449555 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6597 S 9 0 1 "" NA12156 nsv510638 14 64422778 64438051 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617414,nssv618917,nssv622686 M 4 0 3 "" CHM,NA10860,NA18994 esv33119 14 64491244 64504182 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100768,essv100085 M 51 2 0 "" 21656,22086 nsv832816 14 64542997 64714398 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451004 S 95 1 0 "" nsv1312 14 64687844 64704899 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5506 S 9 1 0 "" NA19129 nsv832817 14 64706822 64880159 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451005,nssv1451007 M 95 1 1 "" nsv832818 14 64776612 64952073 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451008 S 95 1 0 "" nsv516371 14 64779964 64782173 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv673503,nssv692053,nssv672370,nssv689894,nssv689237,nssv668507,nssv678389,nssv667841,nssv683669 M 2026 0 9 "" nsv817636 14 64779964 64782173 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415788,nssv1415789 M 112 0 2 "" NA12865,NA12874 nsv442344 14 64804950 64812189 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv817637 14 64805110 64810519 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417230 S 112 1 0 "" NA18576 nsv515522 14 64816319 64840863 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv654386,nssv679167,nssv670449,nssv679494,nssv690255,nssv681754,nssv676484,nssv666296,nssv689550,nssv679353,nssv665307,nssv661252,nssv678881,nssv672156,nssv658440,nssv675842,nssv661048,nssv659113,nssv680286,nssv693981,nssv685398,nssv660195,nssv668449,nssv653450,nssv670586,nssv679920,nssv664892,nssv674384,nssv657532,nssv676196,nssv675725,nssv658852,nssv678644,nssv662653,nssv665039,nssv675071,nssv690864,nssv663319,nssv691645,nssv655627,nssv688480,nssv672028,nssv656028,nssv657808,nssv664365,nssv691692,nssv690494,nssv686866 M 2026 0 48 "" nsv510639 14 64923636 64954068 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620075 S 4 0 1 "" NA15510 nsv7255 14 64966435 64997545 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1201 S 9 0 0 "" NA19240 nsv456327 14 65025270 65122654 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533668 S 1557 0 1 "" 1780862206_A nsv832819 14 65027702 65175772 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451009 S 95 1 0 "" nsv517316 14 65143464 65146283 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv681099,nssv669963,nssv682129,nssv672810,nssv657017,nssv689869,nssv652529,nssv668171,nssv687906,nssv684780,nssv677960,nssv685795,nssv652818,nssv651690,nssv664869,nssv686135,nssv683740,nssv689916,nssv661534,nssv654425,nssv665063,nssv690952,nssv660224,nssv688954,nssv654802,nssv693741,nssv683318,nssv686019,nssv670267,nssv663148,nssv692510,nssv664685,nssv685065,nssv656160,nssv691973,nssv682765,nssv680645 M 2026 0 37 "" nsv509538 14 65315701 65360549 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619650 S 4 1 0 "" NA10860 nsv456328 14 65329147 65357727 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533669 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00696 nsv519255 14 65365960 65369348 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696750 S 2026 0 1 "" nsv832820 14 65380599 65432598 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451010,nssv1451011 M 95 1 1 "" nsv1313 14 65479814 65507050 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9207 S 9 0 1 "" NA12156 nsv1314 14 65748756 65793437 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2077 S 9 0 1 "" NA18555 nsv85078 14 65880383 65880694 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103656 M 24 "" nsv525460 14 65920938 66696347 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701588 S 2026 0 1 "" nsv521739 14 65950115 66000011 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694504 S 2026 0 1 "" nsv528657 14 66060920 66094717 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705291 S 2026 0 1 "" nsv1315 14 66063737 66088927 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5507 S 9 1 0 "" NA19129 nsv510640 14 66140173 66155146 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617415 S 4 0 1 "" CHM nsv85250 14 66165713 66165713 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103828 M 24 "" nsv524441 14 66173332 66177823 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700372 S 2026 0 1 "" nsv85719 14 66219877 66219877 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv104297 M 24 "" nsv1316 14 66222289 66253370 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2078 S 9 1 0 "" NA18555 nsv510641 14 66284730 66296355 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618919 S 4 0 1 "" NA10860 esv2751285 14 66434500 66956534 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6982515,essv6988546,essv6982516,essv6986197,essv6986198 M 771 1 0 "" BEC_462 nsv1317 14 66471122 66502321 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1202,nssv10018 M 9 2 0 "" NA18956,NA19240 nsv832821 14 66660171 66897922 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451012 S 95 1 0 "" nsv456331 14 66802614 67173533 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533672 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00650 nsv84764 14 66820915 66821017 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103342 M 24 "" nsv509539 14 66920036 66941818 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618107 S 4 1 0 "" CHM nsv1318 14 66930052 66943549 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1203 S 9 1 0 "" NA19240 nsv1319 14 66933314 66978478 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9208 S 9 0 1 "" NA12156 nsv1320 14 67008477 67053910 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6598 S 9 0 1 "" NA12156 nsv526811 14 67016665 67018827 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703165 S 2026 0 1 "" nsv1322 14 67017578 67051071 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2920 S 9 1 0 "" NA18555 dgv138n21 14 67125637 67127629 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv516552,nsv519078 M 2026 0 3 "" nsv521832 14 67210762 67274629 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694605 S 2026 0 1 "" nsv1323 14 67290453 67300450 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5508 S 9 1 0 "" NA19129 nsv518669 14 67424295 67432263 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696119 S 2026 1 0 "" dgv36n6 14 67446758 67446917 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv84443,nsv85148 M 24 "" nsv85157 14 67569373 67572964 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103735 M 24 "" nsv85709 14 67608550 67608550 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv104287 M 24 "" nsv85056 14 67672785 67673484 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103634 M 24 "" nsv510383 14 67785869 67791869 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618406 S 4 0 1 "" CHM nsv1324 14 67844163 67858387 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1204 S 9 1 0 "" NA19240 nsv1325 14 67858932 67892449 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9209 S 9 1 0 "" NA12156 nsv85374 14 67866471 67867837 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103952 M 24 "" nsv832822 14 67944393 68130025 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451025,nssv1451018,nssv1451013,nssv1451024,nssv1451020,nssv1451019,nssv1451021,nssv1451022,nssv1451023,nssv1451034,nssv1451033,nssv1451027,nssv1451026,nssv1451036,nssv1451029,nssv1451032,nssv1451031,nssv1451030,nssv1451037,nssv1451038,nssv1451035,nssv1451016,nssv1451015,nssv1451014 M 95 0 24 "" nsv1326 14 67957728 67989181 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5509 S 9 1 0 "" NA19129 nsv525928 14 67973812 67975727 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702132 S 2026 0 1 "" nsv1327 14 68001986 68036057 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4118 S 9 1 0 "" NA12878 nsv521761 14 68066219 68071073 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694529 S 2026 1 0 "" nsv516239 14 68080443 68095623 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv666993,nssv654993 M 2026 2 0 "" nsv1328 14 68099375 68108279 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5510 S 9 1 0 "" NA19129 nsv516614 14 68139347 68147210 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv656205,nssv697454,nssv671929,nssv699562,nssv699319,nssv704188,nssv674336,nssv669577,nssv656541,nssv674631,nssv675364 M 2026 0 11 "" nsv1329 14 68212229 68246740 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9210 S 9 0 1 "" NA12156 nsv516770 14 68274621 68279812 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv670853,nssv662422,nssv685532,nssv683016,nssv670733 M 2026 0 5 "" nsv523795 14 68286165 68289649 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699623 S 2026 0 1 "" nsv456332 14 68286165 68299833 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533673 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00777 nsv518793 14 68398902 68401406 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696246 S 2026 0 1 "" nsv85448 14 68402582 68405422 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv104026 M 24 "" nsv832823 14 68458606 68637391 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451041,nssv1451040 M 95 0 2 "" nsv456333 14 68462198 68485715 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533674 S 1557 0 1 "" 1782681216_A nsv515850 14 68540024 68540186 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv661600,nssv665010 M 2026 0 2 "" nsv1330 14 68558330 68576512 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2921,nssv9212 M 9 2 0 "" NA12156,NA18555 nsv507759 14 68561953 68567953 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623172 S 4 1 0 "" NA18994 nsv1331 14 68594683 68627011 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10019 S 9 1 0 "" NA18956 nsv1333 14 68808436 68851770 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9213,nssv1205 M 9 2 0 "" NA12156,NA19240 nsv528359 14 68858656 68860142 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704946 S 2026 0 1 "" nsv526398 14 68940171 68940697 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702697 S 2026 0 1 "" nsv456335 14 68998060 69041351 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533675 S 1557 1 0 "" NINDS_146 nsv510642 14 69053046 69100088 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620076 S 4 0 1 "" NA15510 nsv94 14 69072118 69100168 CNV Loss Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv94 S 1 0 1 "" NA15510 nsv1334 14 69072118 69102394 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10919,nssv1207 M 9 0 2 "" NA15510,NA19240 nsv9151 14 69086153 69093426 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22940,nssv22149,nssv23978,nssv20312 M 31 0 4 Samples from several populations that are part of the HapMap project. "" NA07029,NA12740,NA19144,NA19240 nsv442686 14 69088121 69092220 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv438262 14 69089943 69091315 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470626,nssv470625,nssv470627 M 269 0 3 Samples from several populations that are part of the HapMap project. "" NA06985,NA11832,NA12875 nsv1335 14 69105879 69132337 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2079 S 9 0 1 "" NA18555 nsv1336 14 69150329 69161906 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5511 S 9 1 0 "" NA19129 nsv456336 14 69151709 69643902 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533676 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01309 nsv832824 14 69390392 69581154 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451042 S 95 1 0 "" nsv523796 14 69443875 69456496 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699624 S 2026 0 1 "" nsv1337 14 69454442 69512929 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5512,nssv4119 M 9 2 0 "" NA12878,NA19129 nsv817638 14 69559433 69570726 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415699 S 112 1 0 "" NA12248 nsv519644 14 69604576 69610779 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696969 S 2026 0 1 "" nsv832826 14 69629342 69793217 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451043 S 95 1 0 "" nsv1338 14 69701476 69733760 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10020 S 9 1 0 "" NA18956 nsv517712 14 70131302 70131709 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv652926,nssv692961 M 2026 0 2 "" nsv527969 14 70220174 70225737 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704481 S 2026 0 1 "" nsv525761 14 70329844 70330060 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701929 S 2026 0 1 "" nsv1339 14 70384885 70396194 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4121 S 9 1 0 "" NA12878 nsv85150 14 70507581 70507913 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103728 M 24 "" nsv1340 14 70514920 70561939 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1208,nssv2922 M 9 2 0 "" NA18555,NA19240 nsv832827 14 70745931 70903272 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451044 S 95 1 0 "" nsv1341 14 71018339 71050394 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1209 S 9 1 0 "" NA19240 nsv85474 14 71100972 71103926 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv104052 M 24 "" esv32876 14 71217551 71217837 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv96969 S 51 1 0 "" 21817 nsv84708 14 71274657 71278823 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103286 M 24 "" nsv1342 14 71330331 71375316 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9214 S 9 0 1 "" NA12156 nsv1344 14 71397435 71428407 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10022 S 9 1 0 "" NA18956 nsv1345 14 71419342 71465572 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6599 S 9 0 1 "" NA12156 nsv85657 14 71560547 71560596 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv104235 M 24 "" nsv518009 14 71761360 71762131 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695421 S 2026 0 1 "" nsv437796 14 71804756 71809259 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467677 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19221 essv3245 14 71872489 71884406 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18967 dgv640e1 14 71872489 71889437 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2388,esv991 M 271 0 0 "" NA18976 nsv442345 14 71877157 71879889 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv1346 14 71879713 71915210 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4122 S 9 1 0 "" NA12878 nsv1347 14 72047953 72071006 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10023 S 9 1 0 "" NA18956 nsv518320 14 72093189 72101856 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694225 S 2026 0 1 "" nsv456337 14 72132286 72158466 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533677 S 1557 0 1 "" NINDS_21 nsv456338 14 72140408 72193024 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533678 S 1557 0 1 "" NINDS_198 nsv517683 14 72193024 72207942 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv692204,nssv687150,nssv670777,nssv652836,nssv663722,nssv656775,nssv660176,nssv676737,nssv687397,nssv681826,nssv672616 M 2026 11 0 "" nsv85673 14 72224696 72224772 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv104251 M 24 "" nsv520843 14 72251536 72255682 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697645 S 2026 0 1 "" esv32878 14 72402831 72403424 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93093,essv101626,essv95825,essv99049,essv96596 M 51 0 5 "" 21863,21909,21911,21938,22011 nsv1348 14 72528948 72546105 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9215 S 9 0 1 "" NA12156 esv33255 14 72615927 72616516 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97582,essv95201,essv94008,essv95453,essv93047,essv95878,essv98986,essv96715,essv98001,essv96246 M 51 0 10 "" 21616,21721,21802,21847,21863,21911,21938,22011,22259,22371 nsv507760 14 72735606 72741606 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620570 S 4 1 0 "" NA15510 nsv516851 14 72782675 72807795 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv661271,nssv690264,nssv692934,nssv660177,nssv654441,nssv682593,nssv676847,nssv663723 M 2026 0 8 "" nsv85914 14 72784452 72784536 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv104492 M 24 "" nsv85407 14 72784541 72784630 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103985 M 24 "" esv33062 14 72809358 72810305 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv96999 S 51 1 0 "" 21817 nsv510643 14 73020213 73119401 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618920,nssv622687 M 4 0 2 "" NA10860,NA18994 dgv641e1 14 73030050 73196823 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv11081,essv10893,essv18956,essv22670,essv6026,essv21241,essv22112,essv6138,essv12605,essv17567,essv16138,essv23182,essv9252,essv18614,essv12328,essv16962,essv11800,essv9868,essv8930,essv20059,essv14307,essv16552,essv17840,esv458,essv9395,essv15257,essv19231,essv13939,essv10619,essv11551,essv12975,essv9136,essv8145,essv14093,essv19094,essv18321,essv17153,essv17957,essv11862,essv16467,essv20163,essv7577,essv12196,essv15830,essv22327,essv15090,essv16050,essv11941,essv14558,essv8181,essv23126,essv22203,essv2813 M 271 0 0 "" NA06985,NA07048,NA07055,NA10831,NA10838,NA10846,NA10855,NA10857,NA11832,NA12003,NA12005,NA12044,NA12156,NA12234,NA12752,NA12762,NA12891,NA18501,NA18502,NA18521,NA18532,NA18545,NA18571,NA18853,NA18854,NA18855,NA18859,NA18860,NA18861,NA18987,NA19094,NA19098,NA19100,NA19101,NA19116,NA19128,NA19129,NA19138,NA19139,NA19144,NA19145,NA19171,NA19173,NA19194,NA19200,NA19202,NA19206,NA19209,NA19210,NA19211,NA19221,NA19223 nsv832828 14 73034707 73200904 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451046,nssv1451045 M 95 1 1 "" nsv9152 14 73051180 73054636 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21977,nssv23771,nssv25253,nssv21206,nssv20916,nssv22179,nssv21213,nssv21468,nssv21655,nssv22969,nssv20342,nssv24035,nssv19852 M 31 1 12 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10863,NA12740,NA18504,NA18563,NA18564,NA18860,NA18942,NA18980,NA19007,NA19144,NA19240 nsv1349 14 73051786 73066872 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6600 S 9 1 0 "" NA12156 nsv1350 14 73055030 73105589 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9507,nssv2080,nssv4123,nssv1210,nssv10024 M 9 0 5 "" NA12878,NA18507,NA18555,NA18956,NA19240 nsv9153 14 73061866 73123483 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21256,nssv21498,nssv20874,nssv21715,nssv23798,nssv19535,nssv21528,nssv22007,nssv22037,nssv19912,nssv21350,nssv20976,nssv23825,nssv24940,nssv19882,nssv21226,nssv24769,nssv19565,nssv22998,nssv19942,nssv24762,nssv20946,nssv24744,nssv20432,nssv22035,nssv19000,nssv19030,nssv19661,nssv24748,nssv22209,nssv26766,nssv20904,nssv21243,nssv24773,nssv24089,nssv19972,nssv21236,nssv22065,nssv22328,nssv24794,nssv24062,nssv19489,nssv25278,nssv21685,nssv22049,nssv21286,nssv20372,nssv22297,nssv21634 M 31 29 13 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10847,NA10863,NA11830,NA12155,NA12740,NA12802,NA12872,NA18502,NA18504,NA18517,NA18537,NA18552,NA18563,NA18564,NA18572,NA18853,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19144,NA19173,NA19221,NA19240 nsv442687 14 73070876 73090732 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" esv33155 14 73071433 73128092 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101482,essv98760,essv97513,essv101246,essv100693,essv100884,essv96791,essv100942,essv95215,essv98206,essv94138,essv101373,essv96974,essv97817,essv95633,essv93152,essv93131,essv97406,essv101785,essv95893,essv99096,essv92995,essv92671,essv92727,essv93710,essv96174,essv96673,essv95968,essv93540,essv93254,essv99607,essv95000,essv92580,essv98092,essv96512,essv99152,essv99279,essv97769,essv100127,essv100606,essv99522,essv98521,essv96406,essv96321,essv94297 M 51 3 38 "" 21603,21606,21616,21618,21656,21659,21693,21721,21772,21802,21805,21817,21837,21841,21863,21879,21909,21911,21938,21939,21944,21972,22007,22011,22127,22128,22170,22217,22231,22233,22259,22261,22275,22278,22286,22298,22335,22352,22371,22394 nsv482172 14 73073681 73080251 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558533 S 1 1 0 "" KB1 nsv442346 14 73101243 73120017 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv85014 14 73256300 73256691 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103592 M 24 "" nsv1351 14 73303941 73333772 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4124 S 9 0 1 "" NA12878 nsv517455 14 73311441 73312722 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv682781,nssv693993,nssv652065,nssv693460,nssv664893,nssv691767,nssv653155,nssv670909,nssv673175,nssv681403,nssv666279,nssv676776,nssv677259,nssv690530,nssv672466,nssv662621,nssv667246,nssv652957,nssv654356 M 2026 0 19 "" nsv1352 14 73487776 73532481 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9216 S 9 0 1 "" NA12156 nsv456339 14 73490193 73553201 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533679 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00286 nsv524396 14 73494691 73559488 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700314 S 2026 1 0 "" dgv642e1 14 73620134 73676171 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1012,essv8542 M 271 0 0 "" NA18503 nsv9154 14 73639291 73667656 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23852 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18504 nsv520879 14 73720251 73721194 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697666 S 2026 0 1 "" nsv1353 14 73902810 73936764 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9217 S 9 1 0 "" NA12156 nsv832829 14 73914253 74081556 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451047 S 95 0 1 "" esv33960 14 73945269 73946267 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93243 S 51 1 0 "" 22170 nsv832830 14 74038857 74097931 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451048 S 95 0 1 "" nsv832831 14 74082799 74277120 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451051,nssv1451049 M 95 0 2 "" nsv456340 14 74178948 74181099 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533680 S 1557 0 1 "" NINDS_23 nsv520517 14 74178948 74181099 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv671982,nssv685904 M 2026 0 2 "" nsv832832 14 74243194 74421029 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451053,nssv1451055,nssv1451052,nssv1451054 M 95 2 2 "" nsv1355 14 74371027 74417163 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6601 S 9 0 1 "" NA12156 nsv510644 14 74582336 74596694 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617416 S 4 0 1 "" CHM nsv832833 14 74637421 74841316 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451056 S 95 1 0 "" nsv85320 14 74690709 74690857 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103898 M 24 "" nsv515597 14 74741204 74749398 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv689749,nssv651887 M 2026 0 2 "" nsv1356 14 74747770 74775717 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2081 S 9 1 0 "" NA18555 nsv523719 14 74896212 74900874 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699533 S 2026 0 1 "" nsv519397 14 74911690 74925551 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696832 S 2026 0 1 "" nsv1357 14 75033564 75045905 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9218 S 9 0 1 "" NA12156 nsv456342 14 75089508 75115115 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533682 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01169 nsv524538 14 75212748 75217260 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700488 S 2026 1 0 "" nsv1358 14 75297498 75303833 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2923 S 9 1 0 "" NA18555 nsv1359 14 75334612 75377217 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9219 S 9 0 1 "" NA12156 nsv518383 14 75351914 75385818 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695814 S 2026 0 1 "" nsv438263 14 75417994 75430186 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470628,nssv470632,nssv470631 M 269 0 3 Samples from several populations that are part of the HapMap project. "" NA18502,NA19153,NA19160 nsv1360 14 75516151 75561209 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9220 S 9 0 1 "" NA12156 nsv7256 14 75534288 75547088 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1211 S 9 0 0 "" NA19240 nsv507761 14 75678632 75684632 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620571 S 4 1 0 "" NA15510 nsv516141 14 75739789 75741704 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv666449,nssv683103 M 2026 0 2 "" nsv85598 14 75768108 75768108 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv104176 M 24 "" esv32586 14 75998051 75999150 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101203,essv97080 M 51 0 2 "" 21618,22075 nsv507762 14 76022876 76028876 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617890 S 4 1 0 "" CHM esv33546 14 76067916 76068640 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv96934,essv93246 M 51 0 2 "" 21817,22170 esv33972 14 76099850 76100682 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93178 S 51 1 0 "" 22170 nsv524635 14 76121984 76127554 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700600 S 2026 0 1 "" nsv518067 14 76155660 76178123 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695478 S 2026 0 1 "" nsv517919 14 76361705 76366892 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694180 S 2026 0 1 "" nsv522389 14 76375261 76376286 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695169 S 2026 1 0 "" nsv509540 14 76444262 76560457 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619652,nssv619651 M 4 1 0 "" NA10860 nsv85339 14 76446453 76447358 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103917 M 24 "" nsv510384 14 76557457 76563457 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621415 S 4 0 1 "" NA15510 nsv832834 14 76624740 76794110 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451059,nssv1451057,nssv1451058 M 95 1 2 "" nsv1361 14 76777170 76822777 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6603 S 9 0 1 "" NA12156 nsv1362 14 76922955 76968358 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6604 S 9 0 1 "" NA12156 nsv85801 14 76945009 76945909 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv104379 M 24 "" nsv832835 14 76976459 77164960 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451060 S 95 1 0 "" nsv85432 14 77065739 77071029 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv104010 M 24 "" dgv643e1 14 77143933 77332325 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv517,essv15424 M 271 0 0 "" NA19203 essv7944 14 77174650 77282215 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19203 esv34940 14 77174650 77292551 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6990490,essv6986006,essv6980501 M 771 1 0 "" NA19203 nsv521287 14 77177756 77280978 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697889 S 2026 1 0 "" nsv9155 14 77187915 77203583 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26777,nssv21664,nssv25303,nssv22079,nssv19691,nssv24819,nssv22067,nssv24787 M 31 8 0 Samples from several populations that are part of the HapMap project. "" NA10839,NA12872,NA18517,NA18563,NA18860,NA18972,NA19173,NA19221 esv32836 14 77189250 77194711 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv94936 S 51 0 1 "" 22231 nsv84333 14 77190824 77190957 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv102911 M 24 "" nsv84471 14 77194709 77194815 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103049 M 24 "" nsv9156 14 77207894 77210467 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21558 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18564 nsv520021 14 77222674 77278047 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697181 S 2026 1 0 "" nsv519957 14 77278047 77280978 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv671807,nssv659684 M 2026 0 2 "" nsv85459 14 77319660 77319997 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv104037 M 24 "" nsv1363 14 77363836 77398259 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4125 S 9 1 0 "" NA12878 esv34345 14 77440208 77566340 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6978277,essv6978278,essv6978276,essv6978279,essv6987363 M 771 0 1 "" NA18995 dgv644e1 14 77448909 77571772 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2375,esv1259 M 271 0 0 "" NA18995 nsv456345 14 77450143 77468644 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533683 S 1557 0 1 "" 1780854101_A nsv515961 14 77460633 77461761 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv666390,nssv655540,nssv665476 M 2026 0 3 "" nsv519209 14 77627518 77627677 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696698 S 2026 1 0 "" nsv1364 14 77653063 77683192 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5513 S 9 1 0 "" NA19129 nsv520241 14 77692887 77703927 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694371 S 2026 1 0 "" nsv1366 14 77702797 77747471 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9221 S 9 0 1 "" NA12156 nsv832837 14 77836558 78016279 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451062 S 95 1 0 "" nsv516814 14 77855912 77861378 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv671120,nssv676417,nssv701527 M 2026 0 3 "" nsv442347 14 77856088 77861755 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" essv8004 14 77945360 77982720 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19221 dgv645e1 14 77945360 78243281 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv723,essv17821 M 271 0 0 "" NA10831 nsv9157 14 78091569 78093901 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21273 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA07048 esv34435 14 78125151 78180904 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6987781,essv6989172 M 771 0 1 "" NA10831 essv23163 14 78125151 78210289 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA10831 nsv1367 14 78137274 78176140 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9222 S 9 0 1 "" NA12156 nsv442348 14 78230938 78235360 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv517018 14 78231375 78234970 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv690967,nssv656968,nssv661979,nssv663125,nssv673635,nssv693597,nssv653497,nssv670200,nssv678965,nssv691373,nssv679194,nssv694029,nssv658280,nssv656631,nssv655445,nssv673731,nssv688716,nssv679518,nssv691183,nssv669093,nssv690600 M 2026 0 21 "" nsv524797 14 78231375 78237634 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700789 S 2026 0 1 "" nsv1368 14 78278854 78286016 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10025 S 9 1 0 "" NA18956 nsv832838 14 78376380 78515135 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451063 S 95 1 0 "" dgv37n6 14 78723680 78723794 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv85529,nsv84453 M 24 "" dgv646e1 14 78728484 78735438 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1121,essv612 M 271 0 0 "" NA18947 nsv526245 14 78749913 78782005 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702517 S 2026 0 1 "" nsv528346 14 78753709 78817004 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704930 S 2026 0 1 "" nsv521160 14 79033322 79041588 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697820 S 2026 1 0 "" nsv518333 14 79105347 79111379 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695762 S 2026 0 1 "" nsv1369 14 79132597 79164964 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4126 S 9 1 0 "" NA12878 nsv1370 14 79173263 79191643 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4127 S 9 0 1 "" NA12878 nsv84516 14 79176042 79184802 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103094 M 24 "" esv32903 14 79176066 79184140 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101568,essv101117,essv101022,essv98238,essv94824,essv94384,essv97823,essv97412,essv101753,essv95789,essv98954,essv92703,essv93731,essv96133,essv96719,essv97143,essv98636,essv100058,essv93593,essv98116,essv97718,essv100483,essv98345,essv96306,essv94206 M 51 0 25 "" 21603,21618,21693,21772,21791,21808,21837,21879,21909,21911,21938,21944,21972,22007,22011,22075,22085,22086,22128,22259,22278,22298,22352,22371,22394 esv33123 14 79184848 79185577 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98532 S 51 1 0 "" 22085 nsv433530 14 79416423 79426827 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463411 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA18956 nsv832839 14 79454965 79643895 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451064 S 95 1 0 "" nsv1371 14 79789231 79831257 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4634 S 9 0 1 "" NA19129 nsv523797 14 79927509 79928087 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699625 S 2026 0 1 "" nsv1372 14 79940805 79974413 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5514 S 9 1 0 "" NA19129 nsv85424 14 79953920 79953969 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv104002 M 24 "" nsv520394 14 79985343 79993221 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv672261,nssv693742,nssv663668,nssv675745,nssv672760 M 2026 0 5 "" nsv1373 14 79986727 80020983 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1212 S 9 1 0 "" NA19240 nsv832840 14 80339786 80493336 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451065 S 95 1 0 "" nsv456346 14 80469445 80518135 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533684 S 1557 0 1 "" 1780862310_A nsv1374 14 80601961 80633495 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10920 S 9 1 0 "" NA15510 nsv9159 14 80631708 80634071 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25328 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18860 nsv832841 14 80658075 80813674 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451066,nssv1451067 M 95 2 0 "" nsv510645 14 80944377 80976757 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617417 S 4 0 1 "" CHM nsv1375 14 81186115 81207911 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9223 S 9 0 1 "" NA12156 nsv528783 14 81198589 81216291 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705450 S 2026 0 1 "" dgv139n21 14 81206593 81244094 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv523456,nsv521291 M 2026 0 2 "" nsv525823 14 81289303 81337698 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702011 S 2026 0 1 "" nsv1377 14 81544176 81608400 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4128,nssv10027,nssv2082,nssv5515,nssv1213 M 9 0 5 "" NA12878,NA18555,NA18956,NA19129,NA19240 nsv510646 14 81556771 81576635 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622688 S 4 0 1 "" NA18994 nsv442349 14 81705838 81708578 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv832842 14 81940934 82124521 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451070,nssv1451069,nssv1451068 M 95 1 2 "" nsv526316 14 82036723 82036856 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702601 S 2026 0 1 "" nsv1378 14 82057311 82102846 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2083 S 9 0 1 "" NA18555 nsv84552 14 82089355 82089635 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103130 M 24 "" dgv647e1 14 82105460 82216550 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv227,essv1919 M 271 0 0 "" NA18959 esv2751286 14 82135791 82273410 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6981348,essv6987943 M 771 0 1 "" BEC_389 nsv84311 14 82143346 82143346 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv102889 M 24 "" nsv1379 14 82310562 82345510 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1214 S 9 1 0 "" NA19240 nsv510385 14 82378389 82384389 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618407,nssv624162,nssv621416 M 4 0 3 "" CHM,NA15510,NA18994 nsv456348 14 82484857 82513448 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533685 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00723 nsv456349 14 82505512 82525788 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533686 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00423 nsv528552 14 82605133 82614184 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705165 S 2026 0 1 "" nsv456350 14 82636173 84440848 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533687 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00885 nsv520676 14 82662837 82668981 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv673867,nssv677939 M 2026 0 2 "" nsv84907 14 82705607 82706253 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103485 M 24 "" nsv509541 14 82819216 82829291 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619653 S 4 1 0 "" NA10860 nsv510647 14 82819216 82833764 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622689 S 4 0 1 "" NA18994 nsv524605 14 82847656 82861958 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700566 S 2026 0 1 "" nsv456353 14 82916526 82947662 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533688 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01368 nsv527905 14 82926700 83014073 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704409 S 2026 1 0 "" nsv832843 14 82961486 83107826 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451071 S 95 1 0 "" nsv527588 14 83111043 83116313 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704049 S 2026 0 1 "" nsv517398 14 83114478 83116313 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv674847,nssv651905,nssv692401,nssv668247,nssv659157,nssv686417,nssv667651,nssv688185,nssv665477,nssv662903,nssv690236 M 2026 0 11 "" nsv1380 14 83191133 83223560 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6605 S 9 1 0 "" NA12156 dgv648e1 14 83206211 83363593 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2506,esv390 M 271 0 0 "" NA19003 nsv832844 14 83206213 83363580 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451074 S 95 0 1 "" nsv520389 14 83211789 83221434 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694380 S 2026 0 1 "" nsv510386 14 83235764 83241764 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618408,nssv624163,nssv621417,nssv622250 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv523156 14 83287267 83288874 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698865 S 2026 0 1 "" esv2751287 14 83364240 83408000 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6987661,essv6984723 M 771 1 0 "" SPC_169 nsv520014 14 83381720 83406697 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv681764,nssv660088 M 2026 2 0 "" nsv1381 14 83433382 83437479 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4129 S 9 1 0 "" NA12878 nsv84850 14 83439981 83440985 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103428 M 24 "" nsv528927 14 83448122 83460144 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705617 S 2026 0 1 "" nsv516829 14 83507138 83507827 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv675163,nssv685481,nssv654284 M 2026 0 3 "" nsv1382 14 83557300 83601990 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9225 S 9 0 1 "" NA12156 nsv510387 14 83652469 83658469 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624164 S 4 0 1 "" NA18994 dgv140n21 14 83666556 83667977 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv525665,nsv528960 M 2026 0 2 "" nsv518279 14 83667977 83681841 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695710 S 2026 0 1 "" nsv85291 14 83675425 83675633 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103869 M 24 "" nsv85516 14 83733863 83741261 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv104094 M 24 "" nsv832845 14 83796131 83969952 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451075 S 95 0 1 "" esv2751288 14 83885083 84773800 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6989773,essv6983337,essv6983338,essv6989359 M 771 0 1 "" BEC_64 nsv85151 14 83927753 83930194 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103729 M 24 "" nsv85605 14 84208899 84209378 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv104183 M 24 "" nsv84619 14 84263822 84267492 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103197 M 24 "" nsv1383 14 84347252 84400000 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6606,nssv2084 M 9 0 2 "" NA12156,NA18555 nsv510648 14 84354998 84374613 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617418 S 4 0 1 "" CHM nsv84459 14 84400941 84402717 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103037 M 24 "" nsv85036 14 84492915 84493006 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103614 M 24 "" nsv1384 14 84562088 84596048 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2924 S 9 1 0 "" NA18555 nsv523883 14 84567439 84568918 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699725 S 2026 0 1 "" nsv832846 14 84587489 84785403 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451076,nssv1451078,nssv1451077 M 95 3 0 "" nsv9160 14 84630054 84634301 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23879 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18504 dgv649e1 14 84633513 84635740 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv19477,esv1301 M 271 0 0 "" NA12750 nsv456356 14 84692463 84734232 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533689 S 1557 1 0 "" 1780854261_A nsv84514 14 84746678 84746813 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103092 M 24 "" esv2422273 14 84772902 84837045 CNV Deletion Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161386 S 181 0 1 "" ND04586 nsv507763 14 84799312 84805312 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619132 S 4 1 0 "" NA10860 nsv456357 14 84924908 84965914 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533690 S 1557 0 1 "" NINDS_172 nsv510388 14 85052410 85058410 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624165 S 4 0 1 "" NA18994 nsv85122 14 85151820 85151820 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103700 M 24 "" nsv1385 14 85204559 85238350 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9226 S 9 1 0 "" NA12156 nsv84892 14 85213147 85220123 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103470 M 24 "" dgv650e1 14 85228067 85495155 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv506,essv17820 M 271 0 0 "" NA10831 essv6530 14 85252320 85260552 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18611 nsv84998 14 85262763 85262826 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103576 M 24 "" nsv516853 14 85312721 85313667 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv654442,nssv693661 M 2026 0 2 "" nsv9161 14 85334444 85336704 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23906 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18504 nsv9162 14 85352528 85353978 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22358 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA12155 nsv9163 14 85355002 85384898 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22327,nssv22388 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA11830,NA12155 nsv442350 14 85356069 85381922 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv517154 14 85357100 85379917 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv671226,nssv661777,nssv657611,nssv671824,nssv665646,nssv670362,nssv673868,nssv664628,nssv667146,nssv693148,nssv654426,nssv671983,nssv688306,nssv692447,nssv692326,nssv686807,nssv683073,nssv698695,nssv659796,nssv651729,nssv691974,nssv690341,nssv675431,nssv652712,nssv672761,nssv656756,nssv661038,nssv691818,nssv661382,nssv684744,nssv667564,nssv678319,nssv671997,nssv692311,nssv684098,nssv693799,nssv683222,nssv681035,nssv675194,nssv688741,nssv658537,nssv670201,nssv687132,nssv678454,nssv655232,nssv652237,nssv665545,nssv657018,nssv653882,nssv651868,nssv655541,nssv672523,nssv688103,nssv693205,nssv674144,nssv687632,nssv688573,nssv664471 M 2026 3 55 "" dgv258n27 14 85357100 85407365 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv456358,nsv456360,nsv456359 M 1557 0 3 "" 1780862379_A,1780862401_A,1798860114_A nsv509542 14 85445670 85468386 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618108,nssv619654 M 4 2 0 "" CHM,NA10860 nsv456361 14 85496715 85569852 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533694 S 1557 0 1 "" 1780854459_A nsv832848 14 85513247 85678204 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451079 S 95 0 1 "" dgv259n27 14 85519117 85557882 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv456364,nsv456362 M 1557 0 2 "" 1782681087_A,NINDS_96 dgv651e1 14 85520078 85568590 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv21486,esv1180,essv19704 M 271 0 0 "" NA10830,NA12236 nsv442351 14 85530379 85558194 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" essv20507 14 85530668 85559964 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12716 nsv817639 14 85533951 85557882 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415598,nssv1415599 M 112 0 2 "" NA10830,NA12236 dgv260n27 14 85533951 85558846 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv456369,nsv456379,nsv456377,nsv456378,nsv456368,nsv456373,nsv456365,nsv456381,nsv456366,nsv456380,nsv456386,nsv456375,nsv456372,nsv456376,nsv456370,nsv456367,nsv456371 M 1557 0 17 "" 1780854417_A,1780854465_A,1780854496_A,1780862207_A,1780862384_A,1782681095_A,HGDP00514,HGDP00680,HGDP00683,HGDP00725,HGDP00799,HGDP00883,HGDP00912,HGDP01278,HGDP01357,HGDP01361,HGDP01374 dgv261n27 14 85533951 85569852 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv456383,nsv456387,nsv456382 M 1557 0 3 "" 1780862540_A,HGDP00668,HGDP01265 nsv515736 14 85533951 85569852 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv690495,nssv658281,nssv691553,nssv664629,nssv671173,nssv673558,nssv670435,nssv669337,nssv680813,nssv699959,nssv667962,nssv670386,nssv655857,nssv689551,nssv670934,nssv661803,nssv693529,nssv666749,nssv674928,nssv673108,nssv662271,nssv654517,nssv691350,nssv666622,nssv685977,nssv683413,nssv683535,nssv681870,nssv667722,nssv693031,nssv677063,nssv668721,nssv670092,nssv658441 M 2026 0 34 "" nsv456384 14 85533951 85596519 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533717 S 1557 0 1 "" 1780854441_A nsv456388 14 85584928 85696007 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533721 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00613 nsv1386 14 85607155 85652240 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9227 S 9 0 1 "" NA12156 nsv524909 14 85617476 85624336 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700920 S 2026 0 1 "" nsv517818 14 85741888 85742994 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695223 S 2026 0 1 "" nsv527549 14 85886914 85890958 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704010 S 2026 0 1 "" nsv85361 14 85911744 85911744 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103939 M 24 "" nsv522623 14 85967953 86041768 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv706020 S 2026 0 1 "" nsv85780 14 85980050 85980265 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv104358 M 24 "" nsv456389 14 86006544 86072471 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533722 S 1557 0 1 "" NINDS_241 nsv85195 14 86011939 86011939 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103773 M 24 "" nsv516702 14 86011992 86018289 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv692869,nssv699710,nssv670235 M 2026 0 3 "" nsv1388 14 86015849 86026934 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1216 S 9 1 0 "" NA19240 nsv84766 14 86052823 86052823 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103344 M 24 "" nsv526516 14 86109464 86312816 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702826 S 2026 0 1 "" nsv519455 14 86120559 86133887 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv656248,nssv657315 M 2026 0 2 "" nsv522747 14 86120848 86141467 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698382 S 2026 0 1 "" nsv832849 14 86151504 86340207 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451080,nssv1451081 M 95 2 0 "" dgv652e1 14 86259051 86411966 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv5567,essv1358,esv125 M 271 0 0 "" NA18529,NA19007 nsv526981 14 86335282 86412734 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703354 S 2026 0 1 "" nsv526812 14 86336181 86352849 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703166 S 2026 1 0 "" nsv84334 14 86345022 86345099 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv102912 M 24 "" nsv9164 14 86402159 86405008 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22357 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA11830 nsv527512 14 86410110 86412734 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703966 S 2026 0 1 "" nsv523432 14 86497395 86587947 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699187 S 2026 0 1 "" nsv85640 14 86512662 86516297 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv104218 M 24 "" nsv85145 14 86927818 86928144 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103723 M 24 "" nsv520432 14 87011521 87065371 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv677148,nssv671369 M 2026 0 2 "" dgv38n6 14 87128409 87128528 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv84395,nsv85628 M 24 "" nsv85890 14 87128427 87128562 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv104468 M 24 "" nsv85075 14 87248465 87249825 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103653 M 24 "" dgv653e1 14 87460869 87500047 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1312,essv25183 M 271 0 0 "" NA11840 nsv442353 14 87468124 87492318 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" essv20520 14 87470106 87485253 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12716 nsv9165 14 87470721 87481660 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23933 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18504 nsv515709 14 87477641 87489111 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv662713,nssv664498,nssv667594,nssv681890 M 2026 0 4 "" nsv1389 14 87548487 87581197 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5518 S 9 0 1 "" NA19129 nsv85408 14 87637840 87637990 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103986 M 24 "" nsv85763 14 87731137 87733669 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv104341 M 24 "" nsv84705 14 87846338 87846338 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103283 M 24 "" nsv84810 14 87959773 87959929 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103388 M 24 "" nsv456391 14 87963963 88110070 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533723 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00807 nsv516846 14 88040678 88077313 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv681330,nssv654400 M 2026 2 0 "" nsv1390 14 88165982 88199055 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9228 S 9 1 0 "" NA12156 nsv509543 14 88200013 88238331 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621004 S 4 1 0 "" NA15510 nsv1391 14 88213462 88244904 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4130 S 9 1 0 "" NA12878 nsv85511 14 88325769 88325879 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv104089 M 24 "" nsv832850 14 88350350 88407317 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451089,nssv1451088,nssv1451082,nssv1451085,nssv1451087,nssv1451086,nssv1451090,nssv1451091,nssv1451093,nssv1451092,nssv1451094,nssv1451083 M 95 10 2 "" nsv527364 14 88478016 88487005 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703795 S 2026 0 1 "" nsv832851 14 88611991 88804243 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451096 S 95 1 0 "" nsv526326 14 88729313 88730740 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702616 S 2026 0 1 "" nsv528176 14 88841868 88845937 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704726 S 2026 0 1 "" nsv85548 14 88847591 88848381 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv104126 M 24 "" nsv832852 14 88913151 89087213 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451097 S 95 1 0 "" nsv442354 14 88923778 88925959 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv85015 14 88971489 88972386 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103593 M 24 "" nsv517465 14 89237223 89261881 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv676257,nssv692092,nssv669998,nssv678120,nssv669901,nssv669503,nssv652427,nssv687290,nssv677297,nssv685905,nssv671260,nssv677447,nssv681156,nssv661101,nssv693850,nssv679295,nssv661672,nssv657761,nssv668629,nssv681689,nssv692402,nssv670344,nssv679168,nssv683918,nssv652093,nssv692846,nssv693057 M 2026 0 27 "" nsv832853 14 89355039 89526429 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451122,nssv1451121,nssv1451120,nssv1451114,nssv1451098,nssv1451099,nssv1451100,nssv1451104,nssv1451107,nssv1451123,nssv1451101,nssv1451102,nssv1451103,nssv1451105,nssv1451119,nssv1451110,nssv1451109,nssv1451108,nssv1451116,nssv1451111,nssv1451113,nssv1451112,nssv1451115,nssv1451118 M 95 24 0 "" nsv517864 14 89368467 89369294 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695267 S 2026 0 1 "" nsv832854 14 89414022 89606777 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451124 S 95 1 0 "" nsv507764 14 89462864 89468864 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623174 S 4 1 0 "" NA18994 nsv521779 14 89508733 89525941 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694546 S 2026 0 1 "" nsv1392 14 89579767 89624515 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9229 S 9 0 1 "" NA12156 nsv85254 14 89612715 89612715 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103832 M 24 "" nsv507765 14 89892718 89898718 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620573,nssv617891,nssv619133,nssv623175 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv85701 14 89980830 89980895 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv104279 M 24 "" nsv84550 14 90034302 90034435 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103128 M 24 "" nsv520068 14 90038127 90096985 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv691223,nssv702552,nssv674232,nssv691749,nssv677917,nssv660452,nssv683162 M 2026 0 7 "" nsv456392 14 90044771 90097361 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533724 S 1557 0 1 "" 1780862019_A nsv84673 14 90230818 90231192 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103251 M 24 "" nsv832855 14 90260052 90463757 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451126,nssv1451125,nssv1451127 M 95 0 3 "" nsv516108 14 90327494 90331937 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv678121,nssv666250,nssv692054,nssv688834,nssv674929 M 2026 0 5 "" nsv817641 14 90327494 90331937 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415912,nssv1415913 M 112 0 2 "" NA10861,NA11994 nsv1393 14 90365218 90399154 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9230 S 9 1 0 "" NA12156 nsv832856 14 90383077 90567414 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451129 S 95 0 1 "" nsv521104 14 90620644 90625300 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697789 S 2026 0 1 "" dgv141n21 14 90711987 90769171 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv525422,nsv525655 M 2026 2 0 "" nsv1394 14 90718114 90750643 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6607 S 9 1 0 "" NA12156 nsv832857 14 90721927 90862022 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451130 S 95 0 1 "" nsv817642 14 90791814 90907243 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415700 S 112 1 0 "" NA12248 nsv517700 14 90808834 90833390 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv662140,nssv688905,nssv652893,nssv663796,nssv666750,nssv667342 M 2026 0 6 "" nsv456393 14 90812411 90868443 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533725 S 1557 0 1 "" NINDS_111 nsv1395 14 90825720 90842644 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1217 S 9 1 0 "" NA19240 nsv456394 14 90833390 90866874 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533726 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00970 nsv519459 14 90858704 90861514 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696865 S 2026 0 1 "" nsv525679 14 91061256 91067320 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701837 S 2026 0 1 "" nsv526231 14 91063617 91067320 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702497 S 2026 0 1 "" nsv1396 14 91168913 91175422 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5519 S 9 1 0 "" NA19129 nsv523266 14 91471338 91471387 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699000 S 2026 0 1 "" nsv527458 14 91510819 91595224 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703900 S 2026 0 1 "" nsv523854 14 91533374 91550264 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699689 S 2026 1 0 "" nsv456395 14 91569101 91625808 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533727 S 1557 0 1 "" 1780862309_A nsv85878 14 91607140 91607140 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv104456 M 24 "" nsv1397 14 91676289 91708615 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6608 S 9 1 0 "" NA12156 nsv525315 14 91728763 91741370 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701423 S 2026 0 1 "" nsv523546 14 91738003 91739589 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699324 S 2026 0 1 "" nsv527567 14 91806357 91808898 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704028 S 2026 0 1 "" nsv832859 14 91817742 91985996 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451131 S 95 0 1 "" nsv85403 14 91833609 91833757 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103981 M 24 "" nsv832860 14 91981546 92138262 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451132 S 95 1 0 "" nsv85147 14 91984478 91985377 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103725 M 24 "" nsv84566 14 92024517 92024668 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103144 M 24 "" nsv509544 14 92079168 92121368 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619655 S 4 1 0 "" NA10860 nsv522954 14 92212287 92230275 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698622 S 2026 0 1 "" nsv1399 14 92217782 92248279 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10028 S 9 1 0 "" NA18956 nsv456399 14 92221973 92260536 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533728 S 1557 0 1 "" 1780862306_A nsv456400 14 92240746 92288711 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533729 S 1557 0 1 "" 1780862300_A nsv521526 14 92261224 92264079 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698143 S 2026 0 1 "" nsv522417 14 92348050 92360212 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705770 S 2026 1 0 "" nsv525680 14 92411759 92412033 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701838 S 2026 0 1 "" nsv1400 14 92464304 92509147 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5520 S 9 0 1 "" NA19129 nsv85624 14 92465393 92465472 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv104202 M 24 "" nsv456401 14 92476815 92496373 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533730 S 1557 0 1 "" 1780862084_A nsv517691 14 92476815 92672089 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv692205,nssv677693,nssv658492,nssv692255,nssv691830,nssv684457,nssv677468,nssv672826,nssv691975,nssv699499,nssv656744,nssv669425,nssv692466,nssv666512,nssv686616,nssv679614,nssv654669,nssv672549,nssv675694,nssv668099,nssv674530,nssv661601,nssv664427,nssv654341,nssv692796,nssv705995,nssv662858,nssv681077,nssv666994,nssv674744,nssv693329,nssv660929,nssv690283,nssv700336,nssv662012,nssv668472,nssv679774,nssv660973,nssv664563,nssv675305,nssv656776,nssv656432,nssv652858 M 2026 0 43 "" nsv456402 14 92486689 92529612 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533731 S 1557 0 1 "" NINDS_71 nsv85386 14 92513649 92514885 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103964 M 24 "" nsv1401 14 92522983 92554904 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9231 S 9 0 1 "" NA12156 nsv1402 14 92571144 92602894 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10029 S 9 1 0 "" NA18956 nsv523445 14 92691173 92710201 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699201 S 2026 0 1 "" nsv516487 14 92764771 92768756 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv678270,nssv668667 M 2026 0 2 "" nsv518613 14 92801576 92816315 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696059 S 2026 0 1 "" nsv1403 14 92904344 92937896 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5521 S 9 1 0 "" NA19129 nsv442355 14 92909950 92924155 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv1404 14 93206084 93239585 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9233 S 9 1 0 "" NA12156 nsv524311 14 93278283 93287901 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700213 S 2026 0 1 "" nsv832861 14 93304796 93472168 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451133 S 95 0 1 "" nsv525404 14 93375920 93397227 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701528 S 2026 1 0 "" dgv654e1 14 93382087 93414055 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv9478,esv1349 M 271 0 0 "" NA19154 essv8269 14 93383563 93400847 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19153 nsv456403 14 93408486 93425558 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533732 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00857 nsv521206 14 93459698 93461452 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697844 S 2026 0 1 "" nsv1405 14 93503180 93537548 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2926 S 9 1 0 "" NA18555 nsv832862 14 93699417 93910174 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451134,nssv1451135 M 95 2 0 "" nsv528649 14 93721286 93805356 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705282 S 2026 0 1 "" nsv456405 14 93878513 93911295 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533733 S 1557 0 1 "" NINDS_60 nsv832863 14 93884572 94037577 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451136 S 95 1 0 "" nsv509545 14 93896246 93936502 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619656 S 4 1 0 "" NA10860 nsv1406 14 93897256 93930602 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5522 S 9 1 0 "" NA19129 nsv832864 14 93898191 94074240 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451138,nssv1451137 M 95 0 2 "" nsv510649 14 93957193 94080604 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622690 S 4 0 1 "" NA18994 nsv1407 14 93986171 94014003 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10031 S 9 1 0 "" NA18956 dgv655e1 14 94007639 94015670 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv895,essv6501 M 271 0 0 "" NA18572 nsv832865 14 94035547 94203984 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451140 S 95 1 0 "" nsv1408 14 94062221 94073162 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4635 S 9 0 1 "" NA19129 nsv85460 14 94094359 94094359 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv104038 M 24 "" nsv84734 14 94186950 94187007 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103312 M 24 "" nsv516142 14 94221738 94222866 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv667314,nssv666450,nssv689172 M 2026 3 0 "" esv33915 14 94332705 94333168 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv94312 S 51 0 1 "" 21808 nsv84807 14 94433117 94433117 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103385 M 24 "" nsv85463 14 94476163 94476163 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv104041 M 24 "" nsv456408 14 94512034 94565344 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533735 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00645 nsv84515 14 94638002 94644051 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103093 M 24 "" nsv528121 14 94742696 94748091 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704664 S 2026 0 1 "" nsv1412 14 94763060 94764578 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10032 S 9 1 0 "" NA18956 dgv89e55 14 94828312 95211348 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv2751289,esv2751290 M 771 2 0 "" BEC_632,BEC_701 nsv518870 14 94888106 94893951 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696326 S 2026 0 1 "" nsv84436 14 94902478 94902537 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103014 M 24 "" nsv525357 14 94990135 94991494 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701476 S 2026 1 0 "" nsv85307 14 95009703 95009703 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103885 M 24 "" nsv456410 14 95168460 95194270 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533736 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00774 nsv1413 14 95322240 95367327 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9234 S 9 0 1 "" NA12156 nsv522067 14 95341718 95354839 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694838 S 2026 0 1 "" nsv509547 14 95362837 95446143 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619657 S 4 1 0 "" NA10860 nsv1414 14 95399721 95433303 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9235 S 9 1 0 "" NA12156 nsv817643 14 95515268 95518120 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417355 S 112 0 1 "" NA18612 nsv832866 14 95526524 95682237 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451141 S 95 1 0 "" nsv1415 14 95573313 95588519 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9236 S 9 1 0 "" NA12156 nsv520884 14 95597354 95602064 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv680855,nssv676984 M 2026 0 2 "" nsv527825 14 95713272 95714790 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704321 S 2026 0 1 "" nsv456411 14 95714790 95729426 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533737 S 1557 0 1 "" 1780854392_A nsv1416 14 95753539 95788861 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1218 S 9 1 0 "" NA19240 nsv515629 14 95753951 95758422 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv664161,nssv659713,nssv678093,nssv669173,nssv673601,nssv674250,nssv686867,nssv657771,nssv667265,nssv672617,nssv662318,nssv668421 M 2026 0 12 "" dgv262n27 14 95755457 95758422 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv456413,nsv456412 M 1557 0 2 "" HGDP00694,HGDP00930 nsv510389 14 95952834 95958834 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621418 S 4 0 1 "" NA15510 nsv85589 14 96244958 96245207 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv104167 M 24 "" nsv85164 14 96277217 96279452 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103742 M 24 "" nsv84690 14 96282592 96282653 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103268 M 24 "" nsv84645 14 96282616 96282676 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103223 M 24 "" nsv527405 14 96286186 96289804 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703841 S 2026 0 1 "" nsv510650 14 96308242 96394974 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618922 S 4 0 1 "" NA10860 nsv832867 14 96435672 96611516 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451142 S 95 1 0 "" nsv1417 14 96506662 96540690 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9237 S 9 1 0 "" NA12156 nsv85840 14 96511774 96511774 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv104418 M 24 "" nsv456414 14 96586066 96620589 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533740 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00884 nsv817644 14 96593498 96607368 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415701 S 112 1 0 "" NA12248 nsv456415 14 96924532 96971174 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533741 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00802 nsv1418 14 96935521 96980943 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6609 S 9 0 1 "" NA12156 nsv1419 14 97011706 97056452 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9238 S 9 0 1 "" NA12156 nsv528098 14 97177131 97180171 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704638 S 2026 1 0 "" nsv521281 14 97180091 97180171 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv693257,nssv692345 M 2026 0 2 "" dgv656e1 14 97199755 97224576 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv15930,essv10175,esv1136 M 271 0 0 "" NA18515,NA18516 nsv515499 14 97201697 97207855 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv658226,nssv665260,nssv672892,nssv680040,nssv660304,nssv653329,nssv661673 M 2026 0 7 "" nsv9166 14 97222111 97226746 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25353 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18860 nsv522070 14 97227735 97228937 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694842 S 2026 0 1 "" nsv507766 14 97286241 97292241 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619134,nssv620574,nssv617892 M 4 3 0 "" CHM,NA10860,NA15510 nsv523043 14 97309282 97343102 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698726 S 2026 0 1 "" nsv832868 14 97333804 97484704 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451143,nssv1451147,nssv1451145,nssv1451146,nssv1451144 M 95 4 1 "" nsv526944 14 97578332 97582496 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703314 S 2026 1 0 "" nsv527930 14 97578332 97587915 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704437 S 2026 0 1 "" esv32863 14 97601336 97605649 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99492 S 51 1 0 "" 22335 dgv40n6 14 97732325 97732477 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv85232,nsv85581 M 24 "" nsv456416 14 98104529 98123717 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533742 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00470 nsv516295 14 98104529 98123717 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv686157,nssv654567,nssv682594,nssv669744,nssv684273,nssv667396,nssv678094,nssv657580,nssv659525,nssv690393,nssv686946,nssv654472 M 2026 0 12 "" nsv456417 14 98239983 98271959 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533743 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01169 nsv516436 14 98246921 98263340 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv658574,nssv657713,nssv692256,nssv663540,nssv668348,nssv690936,nssv690756,nssv659894,nssv673823,nssv675929 M 2026 0 10 "" nsv516889 14 98271328 98273557 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv679112,nssv654723 M 2026 0 2 "" nsv516383 14 98353043 98364251 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv685662,nssv667937 M 2026 0 2 "" nsv519702 14 98393765 98406840 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv672618,nssv657659 M 2026 0 2 "" nsv456419 14 98418104 98454491 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533745 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00134 nsv528227 14 98422329 98453017 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704789 S 2026 0 1 "" nsv456420 14 98422998 98445074 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533746 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00721 nsv527246 14 98537430 98537686 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703648 S 2026 0 1 "" nsv1420 14 98565251 98598813 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9239 S 9 1 0 "" NA12156 nsv519807 14 98591186 98591548 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv658818,nssv662983,nssv678724 M 2026 0 3 "" dgv657e1 14 98604476 98636221 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv13267,esv1182 M 271 0 0 "" NA19201 nsv521105 14 98645144 98645462 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv689575,nssv682344 M 2026 0 2 "" nsv832871 14 98751747 98979708 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451148 S 95 1 0 "" nsv832872 14 98752687 98953703 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451149 S 95 0 1 "" nsv528741 14 98784510 98788972 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705399 S 2026 0 1 "" nsv1421 14 98849905 98884625 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1219 S 9 1 0 "" NA19240 nsv527480 14 98882330 98898529 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703925 S 2026 0 1 "" nsv85788 14 99056673 99056733 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv104366 M 24 "" nsv456422 14 99058799 99110135 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533747 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00706 nsv456423 14 99085798 99095928 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533748 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00708 nsv519710 14 99153071 99219255 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv674161,nssv699972,nssv661143,nssv681461,nssv684824,nssv657762 M 2026 0 6 "" nsv1423 14 99228638 99248049 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9240 S 9 0 1 "" NA12156 nsv832873 14 99356742 99533327 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451151 S 95 1 0 "" nsv520997 14 99374819 99378672 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697728 S 2026 0 1 "" nsv456426 14 99421578 99475510 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533749 S 1557 1 0 "" 1780862077_A nsv527865 14 99450701 99502658 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704363 S 2026 0 1 "" nsv524048 14 99452945 99475510 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699912 S 2026 0 1 "" nsv524475 14 99456337 99490749 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700413 S 2026 0 1 "" nsv84672 14 99492389 99492389 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103250 M 24 "" nsv528563 14 99587578 99592280 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705179 S 2026 0 1 "" dgv142n21 14 99587578 99602955 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv527606,nsv518128 M 2026 0 2 "" nsv832874 14 99604560 99754597 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451152 S 95 0 1 "" nsv527130 14 99642707 99715634 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703516 S 2026 0 1 "" nsv526793 14 99677113 99684788 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703146 S 2026 0 1 "" nsv524413 14 99677113 99707988 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700337 S 2026 0 1 "" nsv832875 14 99728682 99904995 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451153 S 95 0 1 "" nsv521690 14 100001096 100270398 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694473 S 2026 0 1 "" nsv509548 14 100058083 100172558 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619658 S 4 1 0 "" NA10860 nsv456427 14 100063798 100153711 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533750 S 1557 0 1 "" NINDS_61 esv2751158 14 100138042 100389000 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6988425,essv6981596,essv6981595,essv6981594,essv6981593 M 771 1 0 "" BEC_303 nsv525723 14 100170339 100273988 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701887 S 2026 0 1 "" nsv1424 14 100177043 100211631 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2927 S 9 1 0 "" NA18555 nsv832876 14 100210923 100389009 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451155,nssv1451154 M 95 0 2 "" nsv456428 14 100214819 100264314 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533751 S 1557 0 1 "" NINDS_33 nsv518619 14 100214932 100217801 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696067 S 2026 0 1 "" nsv1425 14 100264813 100298541 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5523 S 9 1 0 "" NA19129 nsv518066 14 100282461 100287994 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695477 S 2026 0 1 "" nsv509549 14 100354870 100422926 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619659 S 4 1 0 "" NA10860 nsv509550 14 100484778 100504493 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619660 S 4 1 0 "" NA10860 nsv1426 14 100537783 100569601 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4131 S 9 1 0 "" NA12878 nsv85821 14 100546078 100546078 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv104399 M 24 "" nsv509551 14 100593446 100671565 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619661 S 4 1 0 "" NA10860 nsv85651 14 100666329 100666506 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv104229 M 24 "" nsv84560 14 100708762 100708762 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103138 M 24 "" nsv456430 14 100720305 100749749 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533753 S 1557 0 1 "" 1780862094_A nsv84388 14 100732616 100732671 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv102966 M 24 "" nsv85734 14 100732676 100732731 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv104312 M 24 "" esv32974 14 100822507 100827081 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99920 S 51 1 0 "" 22086 nsv517359 14 100914862 100929407 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv668665,nssv677916,nssv651811,nssv679492,nssv701378,nssv696515 M 2026 5 1 "" nsv526792 14 100991643 101001178 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703145 S 2026 0 1 "" nsv517983 14 101029334 101061259 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695396 S 2026 0 1 "" nsv817645 14 101053417 101058804 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417292 S 112 0 1 "" NA18608 nsv518045 14 101372660 101377133 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695456 S 2026 0 1 "" nsv84885 14 101459896 101460017 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103463 M 24 "" dgv25n68 14 101537083 101731612 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH nsv832877,nsv832878 M 95 0 2 "" nsv1427 14 101550327 101584469 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9241 S 9 1 0 "" NA12156 nsv832879 14 101551827 101619069 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451158 S 95 0 1 "" nsv1428 14 101604950 101638446 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9243 S 9 1 0 "" NA12156 nsv1429 14 101737162 101782674 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6610 S 9 0 1 "" NA12156 nsv832880 14 101967513 102146626 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451162,nssv1451160,nssv1451159,nssv1451163 M 95 0 4 "" dgv263n27 14 102003100 102140598 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv456434,nsv456432,nsv456433 M 1557 3 0 "" HGDP00576,HGDP00615,HGDP00628 nsv522878 14 102022696 102071579 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698533 S 2026 0 1 "" nsv1430 14 102132449 102139529 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6612 S 9 1 0 "" NA12156 nsv7257 14 102139004 102165924 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6613,nssv5524 M 9 0 0 "" NA12156,NA19129 nsv516226 14 102167665 102170135 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv667822,nssv666941,nssv661405,nssv672807 M 2026 0 4 "" nsv519641 14 102421282 102431770 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv657314,nssv687721 M 2026 0 2 "" nsv509552 14 102426371 102492619 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623665 S 4 1 0 "" NA18994 nsv9167 14 102443486 102468494 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26788 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19221 nsv832882 14 102506699 102678934 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451164,nssv1451166,nssv1451165 M 95 0 3 "" nsv85067 14 102534967 102535112 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103645 M 24 "" nsv1431 14 102565395 102609618 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5525,nssv2086 M 9 2 0 "" NA18555,NA19129 nsv9168 14 102601482 102983059 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20934 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18975 nsv84629 14 102668074 102668133 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103207 M 24 "" nsv84480 14 102668099 102668158 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103058 M 24 "" nsv84809 14 102727933 102728002 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103387 M 24 "" nsv518132 14 102851569 102853600 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694204 S 2026 0 1 "" nsv832883 14 102997440 103190706 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451167 S 95 0 1 "" nsv85420 14 103003788 103006149 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103998 M 24 "" nsv525874 14 103007125 103020121 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702074 S 2026 1 0 "" nsv85551 14 103017875 103021341 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv104129 M 24 "" nsv9170 14 103064013 103087724 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26799 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19221 dgv658e1 14 103217278 103482566 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv441,essv23404 M 271 0 0 "" NA10854 nsv527425 14 103232016 103268004 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703863 S 2026 0 1 "" nsv9171 14 103250307 103252961 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21303 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA07048 nsv9172 14 103318164 103321938 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22448,nssv21266 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA12155,NA19007 nsv9173 14 103404003 103406239 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21296 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19007 nsv9174 14 103421925 103432696 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22478,nssv26810 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA12155,NA19221 nsv520846 14 103427829 103428874 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv677893,nssv676336 M 2026 0 2 "" nsv526680 14 103496796 103638225 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703012 S 2026 1 0 "" nsv1432 14 103500473 103535093 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2928 S 9 1 0 "" NA18555 nsv84392 14 103535734 103535859 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv102970 M 24 "" nsv518521 14 103593592 103615038 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694245 S 2026 1 0 "" nsv519605 14 103616646 103727513 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv657042,nssv685199 M 2026 0 2 "" nsv509553 14 103664621 103781821 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619662,nssv623666 M 4 2 0 "" NA10860,NA18994 esv33795 14 103672199 103672860 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101503,essv95169,essv95362,essv101688,essv94544,essv96073,essv93504,essv99639,essv94993,essv99205,essv100587,essv96290 M 51 6 6 "" 21603,21721,21872,21909,21932,22127,22128,22217,22231,22275,22298,22371 nsv832884 14 103680390 103735151 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451168 S 95 0 1 "" nsv85244 14 103744661 103744932 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103822 M 24 "" nsv85035 14 103761490 103761734 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103613 M 24 "" nsv832885 14 103780000 103946772 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451169 S 95 1 0 "" nsv84980 14 103786893 103787409 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103558 M 24 "" dgv264n27 14 103793186 103873344 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv456438,nsv456442,nsv456439 M 1557 0 3 "" 1780862306_A,1780862388_A,1782681313_A nsv526099 14 103813993 103863299 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702347 S 2026 0 1 "" nsv509554 14 103816420 103860124 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621005,nssv619663 M 4 2 0 "" NA10860,NA15510 nsv1434 14 103837248 103848401 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9244 S 9 1 0 "" NA12156 dgv90e55 14 103849069 104057447 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv2751161,esv2751159 M 771 2 0 "" BEC_590,BEC_91 nsv456444 14 103863299 104023189 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533762 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00899 nsv85735 14 103869338 103869401 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv104313 M 24 "" nsv85170 14 103869358 103869421 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103748 M 24 "" esv2751160 14 103878757 103984000 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6985248,essv6985247 M 771 1 0 "" SPC_13 nsv520826 14 103908282 103943282 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697635 S 2026 0 1 "" nsv85462 14 103912600 103912742 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv104040 M 24 "" nsv528862 14 103943282 103956015 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705542 S 2026 0 1 "" nsv509555 14 103954790 104049276 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619664,nssv619665 M 4 1 0 "" NA10860 nsv521332 14 103955650 103956015 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697939 S 2026 0 1 "" nsv519840 14 103955650 104032680 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694349 S 2026 1 0 "" nsv1435 14 104020709 104043002 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9245,nssv2087,nssv5526,nssv4132 M 9 4 0 "" NA12156,NA12878,NA18555,NA19129 nsv521738 14 104055059 104066938 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694503 S 2026 0 1 "" nsv1436 14 104082059 104115902 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9246 S 9 1 0 "" NA12156 nsv456445 14 104094557 104241048 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533763 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00696 nsv85217 14 104179055 104179110 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103795 M 24 "" dgv265n27 14 104197399 104279612 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv456446,nsv456448 M 1557 0 2 "" 1780862003_A,NINDS_105 nsv85009 14 104202555 104202628 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103587 M 24 "" nsv517038 14 104217624 104382294 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv659524,nssv663169,nssv698441,nssv670065,nssv689305,nssv680209,nssv658296,nssv673434,nssv689719,nssv658063,nssv674504,nssv677555,nssv685811,nssv665146,nssv661941,nssv659739,nssv684522,nssv691845,nssv658107,nssv692028,nssv655649,nssv691045,nssv653661,nssv666748,nssv671686,nssv684221,nssv686334,nssv689114,nssv692278 M 2026 0 29 "" dgv266n27 14 104225150 104279612 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv456454,nsv456453 M 1557 0 2 "" 1798860108_A,HGDP00558 nsv456455 14 104225150 104330779 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533769 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00950 nsv1437 14 104238477 104270478 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1220 S 9 1 0 "" NA19240 dgv41n6 14 104344946 104345845 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv85485,nsv85344 M 24 "" nsv84293 14 104409658 104409817 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv102871 M 24 "" nsv1438 14 104483773 104528626 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9247 S 9 0 1 "" NA12156 nsv456458 14 104506694 104761137 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533770 S 1557 0 1 "" 1780862444_A esv33530 14 104541300 104543243 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100325 S 51 0 1 "" 22300 nsv9175 14 104567554 104759986 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24965,nssv23026,nssv26821 M 31 3 0 Samples from several populations that are part of the HapMap project. "" NA18502,NA19144,NA19221 dgv659e1 14 104584391 105020471 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv261,essv17768 M 271 0 0 "" NA10831 nsv832886 14 104643003 104677708 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451170,nssv1451171 M 95 0 2 "" nsv456460 14 104645888 104688087 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533771 S 1557 0 1 "" 1780854573_A nsv85437 14 104647716 104650640 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv104015 M 24 "" nsv456461 14 104661929 104704544 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533772 S 1557 0 1 "" 1780862585_A nsv517055 14 104673664 106258352 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv658946,nssv662757,nssv659479,nssv692372,nssv688925,nssv691669,nssv694763,nssv652654,nssv693873,nssv682875,nssv686527,nssv661898,nssv655787,nssv666338,nssv679043,nssv653388,nssv659962,nssv695286,nssv688170,nssv681440,nssv673945,nssv677894,nssv683884,nssv705916,nssv685240,nssv653137,nssv700330,nssv703550,nssv705569,nssv664868,nssv684711,nssv697278,nssv678723,nssv686863,nssv695966,nssv656228,nssv702726,nssv701952,nssv671259,nssv672782,nssv682552,nssv695997,nssv658362,nssv656699,nssv658319,nssv653699,nssv674275,nssv656609 M 2026 23 25 "" nsv817646 14 104686693 104725651 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417935 S 112 0 1 "" NA18853 dgv267n27 14 104686693 104756910 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv456466,nsv456467 M 1557 0 2 "" HGDP00417,HGDP00679 esv32995 14 104703698 104704580 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv94860 S 51 0 1 "" 22231 nsv510651 14 104727927 104796200 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620077 S 4 0 1 "" NA15510 nsv1439 14 104747513 104784449 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1221,nssv5527,nssv4133,nssv2088,nssv9248,nssv10033 M 9 6 0 "" NA12156,NA12878,NA18555,NA18956,NA19129,NA19240 nsv9176 14 104766457 104778724 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24798,nssv21588,nssv22125,nssv22387,nssv20002,nssv21333,nssv24990,nssv20964,nssv22239,nssv26832,nssv21694,nssv21316,nssv23054,nssv19721,nssv22508,nssv21006,nssv25378 M 31 4 13 Samples from several populations that are part of the HapMap project. "" NA07048,NA10839,NA10863,NA11830,NA12155,NA12740,NA12872,NA18502,NA18537,NA18552,NA18564,NA18860,NA18942,NA18975,NA19132,NA19144,NA19221 dgv26n68 14 104788384 104914954 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH nsv832888,nsv832887 M 95 0 2 "" nsv832889 14 104822654 104944254 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451175 S 95 0 1 "" nsv832890 14 104842337 105020471 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451176,nssv1451180,nssv1451181,nssv1451179,nssv1451178,nssv1451177 M 95 0 6 "" nsv817647 14 104919936 105017887 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415702 S 112 1 0 "" NA12248 nsv84553 14 104976510 104976510 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103131 M 24 "" nsv85362 14 104980239 104980239 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103940 M 24 "" nsv1440 14 105010552 105017244 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5528 S 9 1 0 "" NA19129 nsv9177 14 105013898 105023380 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26843 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19221 nsv1441 14 105040053 105072612 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5529 S 9 1 0 "" NA19129 esv32735 14 105082785 105118907 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97269 S 51 1 0 "" 22075 nsv817648 14 105123078 105246247 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417065,nssv1417066,nssv1416273 M 112 0 3 "" NA06994,NA07029,NA12056 nsv817649 14 105123078 106237639 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417643 S 112 0 1 "" NA18992 esv32669 14 105124961 106037469 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101591,essv101611,essv101431,essv101484,essv101472,essv101604,essv98778,essv98869,essv97567,essv101121,essv101167,essv93922,essv93880,essv93798,essv100643,essv100681,essv96853,essv100966,essv100927,essv101082,essv101056,essv101044,essv101004,essv95078,essv95188,essv95175,essv95143,essv95068,essv95065,essv98282,essv98226,essv98169,essv98168,essv98156,essv98152,essv98146,essv94743,essv94781,essv94139,essv94019,essv101344,essv94463,essv94376,essv94361,essv97022,essv96945,essv96933,essv97071,essv97033,essv97936,essv97905,essv97867,essv97848,essv97842,essv97822,essv95601,essv95605,essv95434,essv95557,essv93046,essv93032,essv93016,essv95320,essv97299,essv97452,essv101639,essv101779,essv101770,essv101697,essv95842,essv95910,essv95908,essv94479,essv94553,essv94562,essv94620,essv94627,essv94645,essv94495,essv99070,essv99128,essv92880,essv92885,essv92697,essv92738,essv93617,essv96088,essv96118,essv96132,essv96166,essv96633,essv96603,essv96602,essv97225,essv98535,essv98594,essv98622,essv98623,essv98638,essv100040,essv100067,essv99864,essv99887,essv95974,essv96034,essv93424,essv93434,essv93478,essv93493,essv93264,essv99596,essv99702,essv99686,essv99630,essv94899,essv94925,essv95015,essv95017,essv92633,essv92541,essv92583,essv98084,essv98094,essv98124,essv97987,essv98033,essv96479,essv96425,essv99288,essv99191,essv97634,essv97680,essv97716,essv100209,essv100262,essv100265,essv100160,essv100565,essv100552,essv100447,essv100367,essv99494,essv99449,essv98463,essv98458,essv98437,essv98425,essv96401,essv96380,essv96251,essv94270,essv94268,essv94254,essv94220,essv94200,essv94192,essv94180 M 51 50 15 "" 21603,21606,21616,21618,21634,21656,21659,21693,21721,21772,21791,21802,21805,21808,21817,21837,21841,21847,21863,21872,21879,21909,21911,21932,21938,21939,21944,21972,22007,22011,22075,22085,22086,22127,22128,22170,22217,22231,22233,22259,22261,22275,22278,22286,22298,22300,22335,22352,22371,22394 nsv433278 14 105138663 105195765 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463159 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA18956 nsv1442 14 105142320 105195403 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1222 S 9 0 1 "" NA19240 nsv456468 14 105143361 105246247 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533776 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00970 nsv85265 14 105165579 105165658 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103843 M 24 "" nsv85811 14 105173246 105173305 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv104389 M 24 "" nsv85261 14 105188090 105188152 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103839 M 24 "" nsv7258 14 105197961 105232163 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6614 S 9 0 0 "" NA12156 dgv268n27 14 105208512 105270624 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv456472,nsv456470,nsv456475,nsv456471,nsv456476,nsv456469,nsv456473 M 1557 0 7 "" 1780862394_A,1787431167_A,HGDP00608,HGDP00654,HGDP00732,HGDP01241,HGDP01338 nsv456477 14 105208512 106176088 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533784 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01103 nsv1443 14 105208744 106174849 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10921,nssv5530,nssv1231,nssv9508,nssv2092,nssv4134,nssv10034,nssv10038,nssv5532,nssv1226,nssv2089,nssv9509,nssv1224,nssv4137,nssv9303,nssv10035,nssv4135,nssv2090,nssv6619,nssv6615,nssv6616,nssv5531,nssv1225 M 9 0 9 "" NA12156,NA12878,NA15510,NA18507,NA18517,NA18555,NA18956,NA19129,NA19240 nsv832891 14 105264725 105433220 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451185,nssv1451187,nssv1451186,nssv1451182 M 95 0 4 "" nsv433531 14 105268029 105388147 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463412 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA12878 nsv7259 14 105290146 105343366 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9302 S 9 0 0 "" NA18517 nsv469723 14 105294028 105477141 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649744 M 265 8 36 Samples from several populations that are part of the HapMap project. "" nsv471673 14 105294029 105831033 CNV Gain+Loss Sharp et al 2005 15918152 BAC_aCGH,FISH Eichler Segmental Duplication BAC array nssv550809,nssv550733,nssv550202,nssv550194,nssv550776,nssv550200,nssv550770,nssv550233,nssv550771,nssv549874,nssv550235,nssv550802,nssv550213,nssv550715,nssv550780,nssv549839,nssv550211,nssv550199,nssv550198,nssv550792,nssv550219,nssv550709,nssv549860,nssv549840,nssv550738,nssv550790,nssv550783,nssv550730,nssv550196,nssv550706,nssv550788,nssv550741,nssv550209,nssv550226,nssv550767,nssv550777,nssv550810,nssv549858,nssv550224,nssv550805,nssv550207,nssv550728,nssv550793,nssv550786,nssv549872,nssv550801,nssv550712,nssv549873,nssv550725,nssv549837,nssv549854,nssv550775,nssv550799,nssv549865,nssv550784,nssv549863,nssv550716,nssv550722,nssv550215,nssv550724,nssv550806,nssv550779,nssv550204,nssv550745,nssv550746,nssv549845,nssv549875,nssv550223,nssv549846,nssv549853,nssv550797,nssv550732,nssv550229,nssv550220,nssv550736,nssv550230,nssv550743,nssv550227,nssv550772,nssv550734,nssv550707,nssv549868,nssv549850,nssv550795,nssv549867,nssv550782,nssv549871,nssv550221,nssv549869,nssv550191,nssv550781,nssv550807,nssv550705,nssv550774,nssv550740,nssv550214,nssv550720,nssv550768,nssv549857,nssv549838,nssv550228,nssv550735,nssv549842,nssv550731,nssv550800,nssv549848,nssv549861,nssv550794,nssv550708,nssv550727,nssv550723,nssv549866,nssv549843,nssv549870,nssv550719,nssv550222,nssv550803,nssv550206,nssv550216,nssv550232,nssv550710,nssv550201,nssv550769,nssv550193,nssv550203,nssv549851,nssv549859,nssv550747,nssv550798,nssv550739,nssv550714,nssv550787,nssv549844,nssv550742,nssv549847,nssv550773,nssv550197,nssv550713,nssv549855,nssv550804,nssv549849,nssv550210,nssv549864,nssv550218,nssv550717,nssv550192,nssv550217,nssv550726,nssv549856,nssv550785,nssv550729,nssv550789,nssv550711,nssv550718,nssv550231,nssv550808,nssv550234,nssv550208,nssv550791,nssv549852,nssv549862,nssv550744,nssv550205,nssv550195,nssv549841,nssv550721,nssv550737,nssv549836,nssv550778,nssv550212,nssv550796,nssv550225 M 48 1 46 "" JK1051,JK1058,JK1061,JK1688,JK776,NA10469,NA10470,NA10471,NA10472,NA10473,NA10492,NA10493,NA10494,NA10495,NA10496,NA10967,NA10969,NA10970,NA10971,NA10976,NA10979,NA11323,NA11521,NA11523,NA11776,NA15724,NA15725,NA15726,NA15727,NA15728,NA15729,NA15730,NA15731,NA15732,NA15733,NA16688,NA16689,NA17014,NA17015,NA17016,NA17017,NA17020,NA17051,NA17058,NA17059,P86GA nsv95 14 105301889 105469293 CNV Loss Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv95 S 1 0 1 "" NA15510 nsv438264 14 105314416 105374891 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470633,nssv470634 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA06994,NA07019 nsv433532 14 105322394 105374370 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463413 S 9 0 1 "" NA15510 dgv27n68 14 105325858 105517442 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH nsv832894,nsv832893 M 95 4 42 "" nsv821677 14 105329646 106093098 CNV Gain Sebat_et_al_2004 15273396 ROMA Custom Nimblegen photoprint 85000 probe ROMA oligo array nssv1421286,nssv1421285,nssv1421284,nssv1421273,nssv1421281,nssv1421277,nssv1421274,nssv1421276,nssv1421278,nssv1421282,nssv1421280,nssv1421283,nssv1421275,nssv1421272 M 31 14 0 "" nsv85005 14 105387912 105387912 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103583 M 24 "" nsv85748 14 105390923 105390923 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv104326 M 24 "" nsv832895 14 105480026 105600462 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451249,nssv1451248,nssv1451238,nssv1451241,nssv1451247,nssv1451240,nssv1451243,nssv1451244,nssv1451242,nssv1451246,nssv1451251,nssv1451252,nssv1451254,nssv1451253,nssv1451257,nssv1451258,nssv1451256,nssv1451255,nssv1451245 M 95 3 16 "" nsv511038 14 105500885 105558157 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624347,nssv618675 M 4 0 0 "" CHM,NA18994 nsv469817 14 105512456 105672588 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649838 M 265 34 5 Samples from several populations that are part of the HapMap project. "" nsv433424 14 105529364 105929315 CNV Gain Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463305 S 9 1 0 Samples from several populations that are part of the HapMap project. "" NA19240 esv33760 14 105534410 106253675 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101544,essv97462,essv101250,essv93907,essv100684,essv100963,essv95090,essv98265,essv101427,essv96881,essv97881,essv95738,essv95553,essv97372,essv94574,essv92725,essv96095,essv97270,essv99880,essv96064,essv93295,essv97971,essv99214,essv97707,essv100275,essv100434,essv99423,essv99394,essv98479,essv96325,essv94157 M 51 29 2 "" 21603,21616,21618,21634,21656,21693,21721,21772,21805,21817,21837,21841,21847,21879,21932,21944,22007,22075,22086,22127,22170,22259,22275,22278,22286,22300,22335,22352,22371,22394 nsv1445 14 105542885 105574268 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4136,nssv1227 M 9 2 0 "" NA12878,NA19240 nsv438265 14 105585123 106064990 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470646,nssv470636,nssv470642,nssv470637,nssv470648,nssv470644,nssv470643,nssv470647,nssv470639,nssv470638,nssv470640,nssv470645,nssv470635 M 269 0 11 Samples from several populations that are part of the HapMap project. "" NA06994,NA07029,NA18594,NA18870,NA18872,NA19000,NA19159,NA19161,NA19171,NA19172,NA19173 nsv832896 14 105586163 105757311 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451260,nssv1451282,nssv1451281,nssv1451259,nssv1451280,nssv1451262,nssv1451263,nssv1451267,nssv1451264,nssv1451268,nssv1451266,nssv1451279,nssv1451265,nssv1451269,nssv1451278,nssv1451270,nssv1451271,nssv1451274,nssv1451277,nssv1451273,nssv1451276,nssv1451275 M 95 3 19 "" nsv510652 14 105594829 105616212 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617419 S 4 0 1 "" CHM nsv507767 14 105600645 105606645 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623176 S 4 1 0 "" NA18994 nsv1446 14 105614448 105644256 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1228 S 9 1 0 "" NA19240 nsv509556 14 105627715 105649696 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623667 S 4 1 0 "" NA18994 nsv832897 14 105659034 105849327 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451301,nssv1451298,nssv1451296,nssv1451290,nssv1451297,nssv1451302,nssv1451287,nssv1451300,nssv1451289,nssv1451288,nssv1451293,nssv1451286,nssv1451292,nssv1451291,nssv1451285,nssv1451299,nssv1451284 M 95 0 17 "" nsv469645 14 105679972 105831033 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649572 M 265 23 12 Samples from several populations that are part of the HapMap project. "" nsv1447 14 105766031 105789651 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10036,nssv6617 M 9 2 0 "" NA12156,NA18956 nsv832898 14 105779689 105964048 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451314,nssv1451303,nssv1451307,nssv1451305,nssv1451313,nssv1451310,nssv1451309,nssv1451311,nssv1451312,nssv1451316,nssv1451315,nssv1451320,nssv1451304,nssv1451318,nssv1451319,nssv1451321,nssv1451308,nssv1451323,nssv1451322 M 95 2 17 "" nsv509558 14 105787573 105787573 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623668 S 4 1 0 "" NA18994 nsv1448 14 105794276 105829568 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10037,nssv2091 M 9 2 0 "" NA18555,NA18956 nsv511039 14 105834654 105906738 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621630,nssv622408 M 4 0 0 "" NA10860,NA15510 nsv1449 14 105859122 105872252 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2093 S 9 1 0 "" NA18555 nsv507768 14 105860336 105866336 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617893,nssv619135,nssv623177 M 4 3 0 "" CHM,NA10860,NA18994 nsv1450 14 105872997 105875012 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1229 S 9 1 0 "" NA19240 nsv1451 14 105875049 105891701 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1230,nssv6618 M 9 2 0 "" NA12156,NA19240 nsv84536 14 105880472 105889022 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103114 M 24 "" esv2422444 14 105881550 106206942 CNV Deletion Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161390 S 181 0 1 "" ND02405 esv2422368 14 105899000 106074012 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161464 S 181 1 0 "" ND03527 nsv832899 14 105906072 106066046 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451336,nssv1451332,nssv1451326,nssv1451337,nssv1451327,nssv1451335,nssv1451325,nssv1451333,nssv1451331,nssv1451324,nssv1451334,nssv1451330,nssv1451329 M 95 0 13 "" nsv832900 14 105991294 106085250 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451346,nssv1451359,nssv1451365,nssv1451342,nssv1451348,nssv1451352,nssv1451358,nssv1451349,nssv1451351,nssv1451338,nssv1451357,nssv1451355,nssv1451356,nssv1451353,nssv1451360,nssv1451362,nssv1451341,nssv1451363,nssv1451354,nssv1451347,nssv1451345,nssv1451366,nssv1451367,nssv1451344,nssv1451364,nssv1451340,nssv1451343 M 95 0 27 "" nsv84763 14 105996581 105996701 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv103341 M 24 "" nsv817650 14 105997070 106019705 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418315,nssv1418316 M 112 2 0 "" NA19092,NA19094 dgv269n27 14 105997070 106047919 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv456481,nsv456478,nsv456479,nsv456480 M 1557 0 4 "" 1780854441_A,HGDP00189,HGDP00230,HGDP01417 nsv817652 14 105997070 106049356 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418102,nssv1417068 M 112 0 2 "" NA07029,NA11881 nsv817653 14 105997070 106076741 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416797,nssv1416796 M 112 2 0 "" NA19159,NA19161 nsv817654 14 105997070 106088226 CNV Gain+Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417457,nssv1415601,nssv1416009,nssv1415703 M 112 2 2 "" NA10830,NA10835,NA12740,NA18953 dgv270n27 14 105997070 106094023 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv456489,nsv456490,nsv456482,nsv456544,nsv456487,nsv456557,nsv456484,nsv456483,nsv456492,nsv456491,nsv456543,nsv456488 M 1557 0 12 "" HGDP00527,HGDP00632,HGDP00776,HGDP00891,HGDP00934,HGDP01206,HGDP01209,HGDP01221,HGDP01245,NINDS_247,NINDS_66,NINDS_72 dgv271n27 14 105997070 106117190 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv456547,nsv456486 M 1557 2 0 "" HGDP00665,HGDP01185 dgv272n27 14 105997070 106127399 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv456506,nsv456494,nsv456501,nsv456502,nsv456497,nsv456548,nsv456546,nsv456503,nsv456545,nsv456504,nsv456500,nsv456508,nsv456498,nsv456505,nsv456499,nsv456558,nsv456493,nsv456495 M 1557 0 18 "" 1780854080_A,1780854525_A,1780862015_A,1780862298_A,1780862520_A,1798860108_A,HGDP00224,HGDP00428,HGDP00454,HGDP00460,HGDP00591,HGDP00650,HGDP00689,HGDP00727,HGDP00925,HGDP01217,NINDS_53,NINDS_85 nsv817655 14 105997070 106148359 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417067,nssv1416794,nssv1415791,nssv1418401 M 112 0 4 "" NA06994,NA12146,NA12865,NA19160 nsv817656 14 105997070 106158907 CNV Gain+Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418105,nssv1417784,nssv1417785 M 112 1 2 "" NA10859,NA10863,NA12264 nsv456523 14 105997070 106176088 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533830 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00090 dgv273n27 14 105997070 106195287 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv456550,nsv456519,nsv456511,nsv456526,nsv456549,nsv456516,nsv456517,nsv456524,nsv456514,nsv456525,nsv456510,nsv456512,nsv456509,nsv456520,nsv456559,nsv456522,nsv456527,nsv456521,nsv456515,nsv456513,nsv456528 M 1557 0 21 "" 1780854118_A,1780862457_A,1782681179_A,1782681495_A,HGDP00281,HGDP00330,HGDP00433,HGDP00474,HGDP00476,HGDP00535,HGDP00543,HGDP00626,HGDP00686,HGDP00783,HGDP00786,HGDP00941,HGDP01193,HGDP01213,HGDP01285,HGDP01397,NINDS_244 dgv20n64 14 105997070 106259859 CNV Loss Wang_et_al_2007 17921354 SNP_array nsv817657,nsv817658 M 112 0 3 "" NA12750,NA12875,NA18612 dgv274n27 14 105997070 106259859 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv456554,nsv456534,nsv456555,nsv456541,nsv456532,nsv456553,nsv456536,nsv456542,nsv456530,nsv456538,nsv456560,nsv456539,nsv456535,nsv456531,nsv456556,nsv456537,nsv456533 M 1557 0 17 "" 1780854158_A,1780862394_A,1780862469_A,HGDP00125,HGDP00326,HGDP00471,HGDP00654,HGDP00699,HGDP00713,HGDP00820,HGDP00994,HGDP01034,HGDP01167,HGDP01177,HGDP01237,HGDP01406,HGDP01414 nsv817659 14 106016927 106049356 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416096,nssv1416097 M 112 2 0 "" NA12801,NA12813 nsv456561 14 106037939 106088226 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533868 S 1557 0 1 "" NINDS_242 nsv817660 14 106037939 106088226 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415864 S 112 1 0 "" NA11992 dgv275n27 14 106040558 106237639 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv456562,nsv456567 M 1557 0 2 "" 1798860192_A,NINDS_27 dgv276n27 14 106041164 106158907 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv456564,nsv456566 M 1557 0 2 "" 1780862042_A,1780862301_A nsv456565 14 106047919 106076741 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533872 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01226 nsv817661 14 106047919 106088226 CNV Gain+Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415600,nssv1418508,nssv1417214 M 112 1 2 "" NA12154,NA18576,NA19193 nsv832901 14 106048091 106218118 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451370,nssv1451369,nssv1451371,nssv1451368,nssv1451373,nssv1451374,nssv1451375 M 95 1 6 "" nsv456568 14 106066496 106117190 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533875 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01417 nsv817663 14 106066496 106148359 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417069 S 112 0 1 "" NA07029 nsv817664 14 106066496 106185238 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416994 S 112 0 1 "" NA10857 nsv817665 14 106075867 106127399 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415914 S 112 1 0 "" NA11994 dgv277n27 14 106076741 106259859 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv456569,nsv456573,nsv456575 M 1557 0 3 "" HGDP00183,HGDP00702,HGDP01404 nsv456570 14 106088047 106127399 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533877 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00540 dgv278n27 14 106088047 106148359 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv456572,nsv456571 M 1557 0 2 "" HGDP00696,HGDP00739 nsv469849 14 106099158 106230477 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649870 M 265 1 41 Samples from several populations that are part of the HapMap project. "" nsv471674 14 106099159 106230477 CNV Gain+Loss Sharp et al 2005 15918152 BAC_aCGH,FISH Eichler Segmental Duplication BAC array nssv550897,nssv550905,nssv550899,nssv550900,nssv550901,nssv550896,nssv550902,nssv550904,nssv550903,nssv550898,nssv550906 M 48 2 9 "" JK1051,NA10471,NA10472,NA10495,NA10496,NA10979,NA11776,NA15725,NA16689,NA17051,NA17058 dgv279n27 14 106107737 106237639 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv456577,nsv456576,nsv456584 M 1557 0 3 "" 1780846321_A,1780854486_A,NINDS_220 dgv280n27 14 106111466 106193970 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv456579,nsv456582,nsv456578,nsv456583 M 1557 0 4 "" HGDP00356,HGDP00582,HGDP00849,HGDP01305 nsv456580 14 106117190 106127399 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533887 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00237 nsv832902 14 106118005 106302057 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451380,nssv1451384,nssv1451379,nssv1451381,nssv1451378,nssv1451382,nssv1451377,nssv1451376 M 95 6 2 "" nsv456581 14 106127100 106148359 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533888 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01256 dgv281n27 14 106144845 106195287 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv456589,nsv456586 M 1557 0 2 "" HGDP00673,HGDP00899 dgv282n27 14 106144845 106296206 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv456593,nsv456587,nsv456598 M 1557 0 3 "" 1780846005_A,HGDP00643,NINDS_89 nsv456588 14 106144845 106307255 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533895 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00635 dgv283n27 14 106148359 106217737 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv456590,nsv456591,nsv456592 M 1557 0 3 "" 1780854215_A,HGDP00043,NINDS_109 nsv456594 14 106158907 106195287 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533901 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00682 dgv284n27 14 106158907 106243464 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv456597,nsv456600,nsv456595 M 1557 0 3 "" HGDP00330,HGDP00786,HGDP00885 nsv456599 14 106171256 106214339 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533906 S 1557 1 0 "" NINDS_67 nsv456601 14 106174317 106256042 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533908 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00189 nsv456602 14 106176088 106217737 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533909 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01412 nsv456603 14 106180071 106195287 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533910 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01189 nsv456604 14 106195287 106345097 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533911 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00901 essv17371 14 106210547 106212167 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18517 essv14206 14 106210547 106215123 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18913 essv24098 14 106210547 106238827 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA07048 dgv660e1 14 106210547 106253619 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1678,essv9480,essv7663,essv16569,essv24443,essv19323,essv24617,essv24634,essv1649 M 271 0 0 "" NA10846,NA12865,NA12872,NA12875,NA18632,NA18961,NA18992,NA19154,NA19193 dgv661e1 14 106210547 106264422 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv11392,essv2928,essv10722,essv14249,essv7055,essv10973,essv12025,essv14671,essv22805,essv19476,essv15153,essv18048,essv13251,essv9550,essv8717,essv24361,essv19816,essv10500,essv13291,essv19051,essv16375,essv17858,essv3323,essv7914,essv17990,essv15190 M 271 0 0 "" NA06993,NA10839,NA10857,NA11830,NA12005,NA12750,NA12753,NA12864,NA18504,NA18508,NA18612,NA18861,NA18948,NA19007,NA19092,NA19100,NA19116,NA19143,NA19145,NA19172,NA19192,NA19200,NA19201,NA19202,NA19210,NA19239 dgv662e1 14 106210547 106295344 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1306,essv19854,essv3501,essv2764,essv19123,essv18499,essv7955,essv8270,essv12434,essv13217,essv8566,essv20461,essv13234,essv9846,essv23645,essv22722,essv7889,essv4351,essv14941,essv19742,essv20852,essv15437,essv18902,essv6794,essv24337,essv18471,essv13123,essv1700,essv25106,esv1392,essv15956,essv8018,essv21953,essv14844,essv21891,essv24182,essv23151,essv22695,essv22263,essv3835,essv8075,essv23091 M 271 0 0 "" NA06991,NA06994,NA07000,NA07055,NA07056,NA10831,NA10859,NA11829,NA11832,NA11882,NA11992,NA12004,NA12043,NA12044,NA12156,NA12234,NA12239,NA12717,NA12814,NA18594,NA18622,NA18859,NA18871,NA18953,NA18968,NA18980,NA18999,NA19000,NA19119,NA19120,NA19130,NA19131,NA19132,NA19140,NA19142,NA19144,NA19152,NA19153,NA19161,NA19203,NA19206 essv24537 14 106210628 106223861 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA11831 dgv285n27 14 106210628 106243464 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv456606,nsv456605 M 1557 0 2 "" 1780862457_A,HGDP00476 nsv456608 14 106214339 106259859 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533915 S 1557 1 0 "" 1798860570_A dgv663e1 14 106223861 106253619 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv14015,essv20864,essv20736,essv25126,essv12927,essv8390,essv11344,essv11061,essv513,essv20817 M 271 0 0 "" NA07357,NA10855,NA10856,NA12145,NA18952,NA19093,NA19094,NA19128,NA19138,NA19222 nsv509559 14 106245222 106245222 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618109 S 4 1 0 "" CHM dgv286n27 14 106256042 106347672 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv456611,nsv456609,nsv456610 M 1557 3 0 "" 1780854295_A,1780854334_A,NINDS_73 nsv521374 14 106258352 106259859 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697984 S 2026 0 1 "" nsv524402 14 106258352 106295344 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700321 S 2026 0 1 "" nsv520689 14 106347672 106358708 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv680833,nssv674083,nssv696938 M 2026 2 1 "" dgv664e1 15 18263733 18473371 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv12811,essv7308,essv3391 M 271 0 0 "" NA18570,NA18945,NA19120 dgv665e1 15 18263733 18617195 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv4854,essv2247,essv7602,essv4013 M 271 0 0 "" NA18540,NA18545,NA18966,NA18970 dgv666e1 15 18263733 19014108 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv676,essv495,essv24803,essv12176,essv13415,essv263,essv11037,essv6230,essv15306,essv2327,essv1215 M 271 0 0 "" NA10860,NA18636,NA18862,NA18940,NA18951,NA18952,NA18975,NA18978,NA19101,NA19143,NA19192 dgv667e1 15 18263733 19484504 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv16662,essv12899,essv19686,essv18631,essv4409,essv15279,essv22502,essv6620,essv795,essv1929,essv20599 M 271 0 0 "" NA07056,NA11882,NA12234,NA12264,NA18522,NA18573,NA18621,NA18956,NA18959,NA19094,NA19142 dgv668e1 15 18263733 20097557 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv25134,essv844,essv9244,essv24087,essv1353,essv8755,essv5770,essv1088,essv20218,essv149,essv22564,essv573,essv7507,essv22131,essv20547,essv17037,essv18203,essv6425,essv7199,essv17931,essv8631,essv14443,essv12578,essv9910,essv19865,essv22367,essv20042,essv4798,essv19260,essv24866,essv4978,essv13073,essv21827,essv4647,essv12395,essv17313,essv9808,essv19104,essv19523,essv9586,essv24447,essv13399,essv14523,essv17758,essv9692,essv12759,essv1613,essv18259,essv24608,essv5440,essv22817,essv12689,essv13951,essv20132,essv16062,essv3640,essv7870,essv14055 M 271 0 0 "" NA07000,NA07048,NA07055,NA07345,NA07348,NA10831,NA10838,NA10846,NA10856,NA10857,NA10859,NA11839,NA11995,NA12003,NA12004,NA12057,NA12144,NA12234,NA12864,NA12865,NA12875,NA18500,NA18501,NA18532,NA18540,NA18545,NA18547,NA18594,NA18620,NA18632,NA18637,NA18852,NA18856,NA18861,NA18863,NA18872,NA18913,NA18914,NA18942,NA18966,NA18968,NA18973,NA18990,NA18998,NA19007,NA19092,NA19098,NA19128,NA19140,NA19144,NA19145,NA19160,NA19201,NA19202,NA19238,NA19239 nsv511040 15 18305383 19648792 OTHER Inversion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622409,nssv621631 M 4 0 0 "" NA10860,NA15510 nsv832904 15 18327536 18543505 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451388,nssv1451387,nssv1451386,nssv1451385 M 95 4 0 "" nsv832905 15 18353059 18537491 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451389,nssv1451391,nssv1451390,nssv1451392,nssv1451393 M 95 2 3 "" dgv669e1 15 18403665 20545323 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv20525,essv23282,essv19304,essv332,essv3035,essv10178,essv23113,essv24267,essv20863,essv638,essv24632,essv24188,essv4199,essv1326,essv17852,essv18498,essv7678,essv18874,essv19731,essv12035,essv1711,essv11611,essv12862,essv7483,essv2598,essv21686,essv21951,essv2919,essv7640,essv24209,essv21878,essv18892,essv18560,essv21480,essv6459,essv1549,essv19879,essv5609,essv24327,essv19137,essv20984,essv6087,essv22247,essv21199,essv24102,essv25157,essv22025,essv21632,essv25053,essv23628,essv19314,essv22282,essv19376,essv5896,essv17693,essv7469,essv18031,essv19806,essv22705,essv22605,essv928,essv10515,essv13350,essv6484,essv10971,essv20162,essv11930,essv38,essv19132 M 271 0 0 "" NA06991,NA07000,NA07019,NA07022,NA07029,NA07048,NA07055,NA07056,NA07345,NA07348,NA10830,NA10835,NA10846,NA10851,NA10856,NA10857,NA10859,NA10863,NA11830,NA11832,NA11839,NA11881,NA11882,NA11992,NA12004,NA12043,NA12044,NA12144,NA12145,NA12154,NA12156,NA12248,NA12716,NA12717,NA12762,NA12801,NA12812,NA12815,NA12864,NA12872,NA12878,NA18500,NA18502,NA18516,NA18526,NA18561,NA18576,NA18593,NA18620,NA18621,NA18632,NA18633,NA18636,NA18637,NA18949,NA18968,NA18971,NA18973,NA18981,NA18990,NA18991,NA18998,NA19007,NA19012,NA19092,NA19116,NA19207,NA19240 nsv9178 15 18410066 18431801 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24823,nssv22538,nssv21745,nssv23112,nssv21380 M 31 5 0 Samples from several populations that are part of the HapMap project. "" NA12155,NA18853,NA18980,NA19132,NA19144 nsv442358 15 18415652 18454752 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv670e1 15 18419709 18617195 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv13603,essv23983,essv14142,essv22229,essv24658,essv13135,essv13726,essv22945,essv11092,essv6134,essv10147,essv20418,essv6884,essv19768,essv16465,essv2835,essv13865,essv13527,essv22291,essv7687,essv24574,essv1757,essv23517,essv5752,essv8177,essv14734,essv2075,essv22783,essv12850,essv22081,essv1149,essv8869,essv5543 M 271 0 0 "" NA06985,NA06993,NA07019,NA07357,NA10830,NA10835,NA11829,NA11992,NA12044,NA12154,NA12716,NA18508,NA18529,NA18532,NA18593,NA18605,NA18633,NA18854,NA18949,NA18953,NA18964,NA18997,NA19102,NA19119,NA19120,NA19127,NA19130,NA19139,NA19140,NA19159,NA19160,NA19206,NA19211 dgv671e1 15 18419709 18838769 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv10336,essv12526,essv18079,essv21589,essv16493,essv6863,essv2171,essv21118,essv23395 M 271 0 0 "" NA10854,NA12145,NA12155,NA12815,NA18506,NA18558,NA18960,NA19207,NA19210 dgv672e1 15 18419709 19257408 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv19708,essv4945,essv7017,essv23370,essv5001,essv14314,essv22890,essv22654 M 271 0 0 "" NA12236,NA12750,NA12752,NA12760,NA18537,NA18571,NA18612,NA19194 nsv817666 15 18421386 18452025 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417090,nssv1417160,nssv1416798 M 112 0 3 "" NA18529,NA18547,NA19159 nsv516518 15 18421386 21218853 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv654094,nssv672811,nssv663041,nssv688121,nssv689081,nssv699766,nssv661349,nssv659526,nssv671291,nssv697701,nssv663884,nssv673373,nssv673602,nssv697325,nssv678593,nssv672069,nssv699489,nssv687398,nssv660890,nssv689853,nssv656328,nssv686418,nssv701089,nssv685512,nssv687690,nssv657964,nssv671930,nssv652045,nssv692834,nssv652550,nssv665384,nssv701673,nssv666781,nssv653042,nssv685242,nssv679375,nssv665261,nssv654150,nssv669449,nssv690394,nssv673649,nssv700921,nssv668473,nssv694794,nssv692242,nssv657380,nssv661674,nssv652014,nssv688329,nssv675054,nssv679825,nssv654427,nssv690306,nssv687633,nssv684781,nssv653950,nssv662488,nssv656880,nssv676258,nssv666391,nssv659714,nssv688186,nssv688879,nssv669094,nssv679495,nssv673705,nssv686617,nssv669189 M 2026 34 34 "" dgv91e55 15 18427100 19464910 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv2751365,esv2751292,esv2751364,esv2751464,esv35163,esv2751293,esv2751294,esv2751295,esv2751296,esv2751297,esv2751366,esv2751369 M 771 12 0 "" BEC_337,BEC_343,BEC_40,BEC_411,BEC_584,BEC_687,BEC_701,BEC_730,NA11882,NA19194,SPC_128,SPC_184 dgv92e55 15 18427100 20089400 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv35124,esv2751323,esv2751350,esv2751442,esv2751321,esv34567,esv2751391,esv2751318,esv34665,esv2751348,esv2751447,esv2751347,esv34448,esv2751317,esv2751336,esv2751345,esv2751313,esv2751302,esv2751312,esv2751311,esv2751396,esv34865,esv2751471,esv2751326,esv35066,esv2751466,esv2751381,esv2751440,esv34752,esv2751300,esv34796,esv34294,esv2751416,esv34956,esv2751441,esv2751384,esv34977,esv2751334,esv34622,esv2751461,esv34283,esv34197,esv2751430,esv34843,esv34600,esv34277,esv34765,esv2751459,esv2751380,esv2751407,esv2751438,esv2751443,esv34423,esv34205,esv34227,esv34229,esv34245,esv34278,esv34285,esv34336,esv34367,esv34377,esv34382,esv34405,esv34415,esv34424,esv34474,esv34501,esv34526,esv34533,esv34591,esv34632,esv34640,esv34658,esv34673,esv34679,esv34694,esv34696,esv34735,esv34789,esv34805,esv34815,esv34820,esv34827,esv34830,esv34845,esv34868,esv34874,esv34884,esv34911,esv34920,esv34930,esv34975,esv35040,esv35054,esv35076,esv35081,esv35090,esv35095,esv35160,esv35166,esv35172,esv2751298,esv2751299,esv2751301,esv2751303,esv2751304,esv2751305,esv2751306,esv2751307,esv2751308,esv2751309,esv2751310,esv2751314,esv2751315,esv2751316,esv2751319,esv2751320,esv2751322,esv2751324,esv2751325,esv2751327,esv2751328,esv2751329,esv2751330,esv2751331,esv2751332,esv2751333,esv2751335,esv2751337,esv2751338,esv2751339,esv2751340,esv2751341,esv2751342,esv2751343,esv2751344,esv2751346,esv2751349,esv2751377,esv2751378,esv2751379,esv2751389,esv2751390,esv2751392,esv2751393,esv2751394,esv2751395,esv2751397,esv2751398,esv2751399,esv2751400,esv2751401,esv2751402,esv2751403,esv2751404,esv2751405,esv2751406,esv2751408,esv2751414,esv2751415,esv2751417,esv2751418,esv2751428,esv2751429,esv2751435,esv2751439,esv2751460,esv2751465,esv2751470,esv2751472,esv2751477,esv34453 M 771 173 0 "" BEC_104,BEC_11,BEC_117,BEC_123,BEC_126,BEC_131,BEC_176,BEC_229,BEC_236,BEC_293,BEC_299,BEC_30,BEC_342,BEC_350,BEC_353,BEC_360,BEC_361,BEC_373,BEC_389,BEC_401,BEC_405,BEC_408,BEC_427,BEC_434,BEC_438,BEC_445,BEC_462,BEC_468,BEC_470,BEC_48,BEC_484,BEC_5,BEC_500,BEC_51,BEC_512,BEC_514,BEC_516,BEC_519,BEC_528,BEC_535,BEC_538,BEC_539,BEC_543,BEC_544,BEC_556,BEC_566,BEC_569,BEC_570,BEC_576,BEC_586,BEC_593,BEC_607,BEC_611,BEC_618,BEC_619,BEC_621,BEC_625,BEC_633,BEC_637,BEC_638,BEC_642,BEC_644,BEC_647,BEC_651,BEC_652,BEC_654,BEC_657,BEC_660,BEC_661,BEC_675,BEC_676,BEC_691,BEC_713,BEC_716,BEC_719,BEC_722,BEC_728,BEC_73,BEC_738,BEC_739,BEC_759,BEC_764,BEC_785,BEC_789,BEC_806,NA07000,NA07019,NA07022,NA07048,NA07055,NA07345,NA07357,NA10846,NA10854,NA10857,NA10859,NA10861,NA10863,NA11839,NA11992,NA11995,NA12004,NA12144,NA12145,NA12234,NA12716,NA12717,NA12753,NA12762,NA12812,NA12815,NA12864,NA12874,NA12875,NA15510,NA18500,NA18501,NA18516,NA18532,NA18545,NA18547,NA18564,NA18573,NA18582,NA18593,NA18594,NA18605,NA18620,NA18632,NA18633,NA18636,NA18637,NA18852,NA18854,NA18856,NA18863,NA18913,NA18964,NA18968,NA18973,NA18998,NA19005,NA19007,NA19012,NA19092,NA19098,NA19128,NA19144,NA19145,NA19201,NA19202,NA19203,NA19208,NA19210,NA19238,NA19239,NA19240,SPC_108,SPC_121,SPC_13,SPC_136,SPC_14,SPC_153,SPC_165,SPC_17,SPC_178,SPC_19,SPC_192,SPC_25,SPC_52,SPC_65,SPC_76,SPC_87 dgv93e55 15 18427100 20421205 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv2751451,esv2751473,esv34301,esv34361,esv34794,esv2751361,esv2751351,esv2751358,esv34219,esv34649,esv2751352,esv2751354,esv2751355,esv2751357,esv2751359,esv2751360,esv2751362,esv2751448,esv2751452,esv2751454,esv2751462,esv2751463,esv2751353 M 771 23 0 "" BEC_316,BEC_330,BEC_333,BEC_460,BEC_499,BEC_58,BEC_589,BEC_658,BEC_683,BEC_718,BEC_727,BEC_775,NA12043,NA18502,NA18861,NA18942,NA19100,NA19154,NA19207,SPC_118,SPC_129,SPC_147,SPC_4 dgv94e55 15 18427100 20773725 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv2751356,esv34963,esv2751455,esv34215,esv34536,esv34570,esv34573,esv34662,esv35144,esv2751449,esv2751450,esv2751453,esv2751456,esv2751457,esv2751458,esv2751478,esv2751486,esv2751487 M 771 0 18 "" BEC_345,BEC_352,BEC_452,BEC_530,BEC_533,BEC_557,BEC_590,BEC_634,BEC_670,BEC_705,BEC_820,NA12003,NA12892,NA18506,NA18944,NA18991,SPC_113,SPC_71 esv2751363 15 18427100 21405800 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6984258,essv6988777,essv6984257,essv6984259,essv6984256 M 771 1 0 "" BEC_681 dgv95e55 15 18427103 19464910 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv35156,esv2751368,esv34769,esv35168,esv2751367,esv2751370,esv2751371 M 771 0 7 "" BEC_437,BEC_583,BEC_667,BEC_703,NA11830,NA18956,SPC_156 dgv96e55 15 18427103 20089400 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv2751480,esv2751383,esv34936,esv2751474,esv2751374,esv2751423,esv34993,esv2751436,esv2751481,esv2751445,esv34303,esv34212,esv2751468,esv2751411,esv2751479,esv2751484,esv34332,esv34333,esv35036,esv2751446,esv2751431,esv35107,esv2751419,esv35064,esv34537,esv2751427,esv34198,esv34366,esv34458,esv34459,esv34467,esv34496,esv34548,esv34590,esv34773,esv34859,esv34873,esv34908,esv34909,esv34921,esv35067,esv35155,esv35164,esv2751372,esv2751373,esv2751375,esv2751376,esv2751382,esv2751385,esv2751386,esv2751387,esv2751388,esv2751409,esv2751410,esv2751412,esv2751413,esv2751420,esv2751421,esv2751422,esv2751424,esv2751425,esv2751426,esv2751432,esv2751433,esv2751434,esv2751437,esv2751467,esv2751469,esv2751475,esv2751476,esv2751482,esv2751483,esv2751485,esv34780,esv2751444,esv34945 M 771 0 76 "" BEC_106,BEC_234,BEC_24,BEC_328,BEC_335,BEC_357,BEC_359,BEC_376,BEC_377,BEC_382,BEC_400,BEC_406,BEC_418,BEC_425,BEC_492,BEC_501,BEC_541,BEC_560,BEC_561,BEC_57,BEC_571,BEC_575,BEC_581,BEC_605,BEC_622,BEC_631,BEC_635,BEC_665,BEC_668,BEC_673,BEC_692,BEC_695,BEC_704,BEC_706,BEC_721,BEC_742,BEC_745,BEC_793,NA10856,NA11829,NA11832,NA11993,NA12239,NA12751,NA12878,NA12891,NA18572,NA18592,NA18872,NA18945,NA18967,NA18971,NA18972,NA18974,NA18990,NA18994,NA19102,NA19119,NA19127,NA19140,NA19159,NA19160,NA19161,NA19221,SPC_124,SPC_133,SPC_142,SPC_166,SPC_180,SPC_186,SPC_195,SPC_2,SPC_20,SPC_7,SPC_85,SPC_92 nsv9179 15 18431298 20198407 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24928,nssv23308,nssv25644,nssv25003,nssv24917,nssv25552,nssv21798,nssv25403,nssv22598,nssv25621,nssv27007,nssv25666,nssv21530,nssv25428,nssv19639,nssv21738,nssv21246,nssv25575,nssv21326,nssv22187,nssv26947,nssv22139,nssv21346,nssv23196,nssv22568,nssv19180,nssv20182,nssv19931,nssv22447,nssv21216,nssv25270,nssv25320,nssv25090,nssv24953,nssv21784,nssv23168,nssv24017,nssv26957,nssv21114,nssv24844,nssv22169,nssv21483,nssv23140,nssv23224,nssv22687,nssv22269,nssv21904,nssv22537,nssv21596,nssv21386,nssv21678,nssv21560,nssv20152,nssv21506,nssv19549,nssv25529,nssv22329,nssv24942,nssv21805,nssv22449,nssv21376,nssv19519,nssv21566,nssv24837,nssv21496,nssv25295,nssv26997,nssv19150,nssv22920,nssv22477,nssv22199,nssv21453,nssv22299,nssv25115,nssv24873,nssv20702,nssv21024,nssv27047,nssv22628,nssv20552,nssv21648,nssv22155,nssv20032,nssv21204,nssv21186,nssv21536,nssv20762,nssv22157,nssv20462,nssv25028,nssv19811,nssv25065,nssv24071,nssv21096,nssv22127,nssv21513,nssv24848,nssv20612,nssv25483,nssv20642,nssv21363,nssv22804,nssv21470,nssv21618,nssv20062,nssv21708,nssv21126,nssv20492,nssv21356,nssv22978,nssv22891,nssv21500,nssv25195,nssv22185,nssv23960,nssv21036,nssv20122,nssv26925,nssv23252,nssv25245,nssv19595,nssv21144,nssv20994,nssv22716,nssv21466,nssv19060,nssv19210,nssv25220,nssv21174,nssv20212,nssv19669,nssv21054,nssv26987,nssv24116,nssv24044,nssv21814,nssv24978,nssv19609,nssv22833,nssv19120,nssv19841,nssv25598,nssv24812,nssv25506,nssv20522,nssv23280,nssv19270,nssv21835,nssv19901,nssv26936,nssv22509,nssv20582,nssv22775,nssv22862,nssv22359,nssv24862,nssv21476,nssv19961,nssv21724,nssv26914,nssv21156,nssv22479,nssv19781,nssv19579,nssv19871,nssv26977,nssv20672,nssv22215,nssv22658,nssv21865,nssv25015,nssv26967,nssv21844,nssv22949,nssv21874,nssv19240,nssv22507,nssv25040,nssv25140,nssv21895,nssv22389 M 31 20 25 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10847,NA10863,NA11830,NA12155,NA12740,NA12802,NA12872,NA18502,NA18504,NA18517,NA18537,NA18552,NA18563,NA18564,NA18572,NA18853,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19144,NA19173,NA19221,NA19240 esv33668 15 18431802 18654240 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv96268 S 51 1 0 "" 22371 dgv673e1 15 18446422 21241985 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv5870,essv10315,essv16174 M 271 0 0 "" NA18506,NA18555 nsv433425 15 18474541 18654006 CNV Gain Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463306 S 9 1 0 Samples from several populations that are part of the HapMap project. "" NA19240 nsv832906 15 18496750 18637793 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451396,nssv1451402,nssv1451397,nssv1451401,nssv1451399,nssv1451398,nssv1451400,nssv1451403,nssv1451404,nssv1451409,nssv1451408,nssv1451407,nssv1451395 M 95 10 3 "" nsv7260 15 18507843 20333185 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5536,nssv9511,nssv4139,nssv10922,nssv9510,nssv10040,nssv10041,nssv2097,nssv1237,nssv9304,nssv10924,nssv9305,nssv6622,nssv5535,nssv1232,nssv1239,nssv5538,nssv10925,nssv6623,nssv1238 M 9 0 0 "" NA12156,NA12878,NA15510,NA18507,NA18517,NA18555,NA18956,NA19129,NA19240 nsv1452 15 18515594 19126542 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10923,nssv10039,nssv2096,nssv9250,nssv1233,nssv1236 M 9 0 5 "" NA12156,NA15510,NA18555,NA18956,NA19240 nsv821678 15 18526971 20225829 CNV Loss Sebat_et_al_2004 15273396 ROMA Custom Nimblegen photoprint 85000 probe ROMA oligo array nssv1421299,nssv1421294,nssv1421289,nssv1421296,nssv1421305,nssv1421293,nssv1421287,nssv1421297,nssv1421295,nssv1421307,nssv1421303,nssv1421292,nssv1421304,nssv1421300,nssv1421298,nssv1421288,nssv1421306,nssv1421301 M 31 0 18 "" nsv509560 15 18556428 18586445 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623669,nssv619666 M 4 2 0 "" NA10860,NA18994 nsv832907 15 18585936 18814644 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451411,nssv1451415,nssv1451414,nssv1451416,nssv1451412,nssv1451413,nssv1451419,nssv1451418,nssv1451410 M 95 8 1 "" dgv674e1 15 18590230 18804305 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv14986,essv2511,essv17587,essv3082 M 271 0 0 "" NA12762,NA18870,NA18969,NA19003 dgv675e1 15 18590230 18935829 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv13866,essv21381,essv19398 M 271 0 0 "" NA11840,NA12740,NA18854 dgv676e1 15 18590230 19139027 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv24416,essv501,essv18981 M 271 0 0 "" NA12005,NA12707,NA18952 dgv677e1 15 18590230 19257408 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv7314,essv24961 M 271 0 0 "" NA10839,NA18570 dgv678e1 15 18590230 20097557 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv3211,essv3662,essv3925,essv1024,essv12914,essv8222,essv5694,essv12838,essv17356,essv5666,essv2675,essv20811,essv13169,essv16571,essv4213,essv10498,essv18525,essv18476,essv17217,essv6117,essv6977,essv7294,essv16459,essv16220,essv1419,essv22762,essv3419,essv21339,essv14787,essv7622,essv16121,essv20648,essv13543,essv20855,essv3831,essv5784,essv1115,essv3612,essv1801 M 271 0 0 "" NA07019,NA10855,NA11829,NA11832,NA12763,NA12878,NA12892,NA18517,NA18532,NA18547,NA18550,NA18566,NA18582,NA18592,NA18605,NA18609,NA18857,NA18944,NA18945,NA18953,NA18964,NA18967,NA18969,NA18970,NA18971,NA18974,NA18991,NA19005,NA19094,NA19100,NA19102,NA19116,NA19120,NA19139,NA19143,NA19159,NA19160,NA19161,NA19193 dgv679e1 15 18652194 20457011 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv18670,essv4521,essv2135,essv2732,essv1572,essv21585,essv9968,essv15907,essv14156,essv22802,essv5988,essv21369,essv7901,essv4313,essv11302,essv23997,essv20754,essv103,essv21592,essv14681,essv11386,essv13990,essv24548,essv16624,essv13707,essv8518,essv19482,essv9312,essv7975,essv20701,essv17379,essv2102,essv23055,essv10638,essv11470,essv6801,essv25100,essv9841,essv9560,essv23759,essv19337,essv15162,essv23705,essv16819,essv12064,essv8992,essv13271,essv6449,essv6931,essv14226,essv7442,essv21500,essv13492,essv721,essv1991,essv20498,essv14241,essv6101,essv5634,essv2414,essv6208,essv24734,essv21102,essv1651,essv979,essv13309,essv14036 M 271 0 0 "" NA06985,NA07357,NA10854,NA10860,NA11829,NA11831,NA11994,NA12003,NA12056,NA12146,NA12155,NA12716,NA12740,NA12750,NA12753,NA12802,NA12812,NA12814,NA12874,NA18523,NA18552,NA18563,NA18564,NA18573,NA18579,NA18582,NA18592,NA18594,NA18608,NA18623,NA18852,NA18855,NA18856,NA18861,NA18862,NA18863,NA18872,NA18913,NA18914,NA18940,NA18942,NA18951,NA18959,NA18961,NA18964,NA18965,NA18978,NA18997,NA19005,NA19098,NA19100,NA19119,NA19127,NA19140,NA19144,NA19145,NA19194,NA19201,NA19202,NA19204,NA19205,NA19208,NA19210,NA19238,NA19239,NA19240 esv32840 15 18654240 18672590 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98379 S 51 0 1 "" 22352 esv33051 15 18657417 20249915 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101558,essv101489,essv98909,essv97484,essv101139,essv93863,essv100751,essv96865,essv101050,essv95095,essv95123,essv98186,essv94046,essv101393,essv96908,essv97919,essv95570,essv95473,essv93014,essv95327,essv95255,essv95277,essv97327,essv101633,essv101744,essv95884,essv94646,essv94596,essv98999,essv92872,essv92948,essv92762,essv92773,essv93669,essv93776,essv96214,essv96580,essv97095,essv98612,essv100014,essv100091,essv99979,essv99955,essv99814,essv95947,essv93575,essv93488,essv93208,essv99590,essv94889,essv94996,essv95021,essv92665,essv92522,essv98056,essv96561,essv99307,essv99165,essv97734,essv100197,essv100602,essv100499,essv100357,essv100302,essv99544,essv98486,essv94289 M 51 5 46 "" 21603,21606,21616,21618,21634,21656,21659,21693,21721,21772,21802,21805,21817,21837,21841,21847,21863,21872,21879,21909,21911,21932,21938,21939,21944,21972,22007,22011,22075,22085,22086,22127,22128,22170,22217,22231,22233,22259,22261,22275,22278,22286,22298,22300,22335,22352,22394 nsv433426 15 18708208 19031743 CNV Gain Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463307 S 9 1 0 Samples from several populations that are part of the HapMap project. "" NA19240 dgv680e1 15 18711364 18876685 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv962,essv8511 M 271 0 0 "" NA18854,NA18981 nsv1453 15 18742383 18772949 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5533 S 9 1 0 "" NA19129 essv17110 15 18747225 19014108 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19171 dgv681e1 15 18747225 19484504 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2185,essv17589,essv5562,essv13622,essv21744,essv10248,essv9048,essv14834,essv8341,essv23568,essv10871,essv11144 M 271 0 0 "" NA06993,NA10861,NA12762,NA18529,NA18858,NA18871,NA18960,NA19119,NA19127,NA19132,NA19152,NA19211 nsv1454 15 18795529 18825649 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6620,nssv1235,nssv2094,nssv4138,nssv5534 M 9 5 0 "" NA12156,NA12878,NA18555,NA19129,NA19240 dgv682e1 15 18809823 19164450 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv9533,essv10703,essv11335,essv12010,essv8665,essv12106,essv11393,essv8704,essv15188 M 271 0 0 "" NA18504,NA18508,NA19101,NA19128,NA19141,NA19173,NA19192,NA19200,NA19223 essv23303 15 18812205 18846941 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12264 dgv8n14 15 18818086 18887141 CNV Loss Cooper et al 2008 18776910 SNP_array nsv433279,nsv433280 M 9 0 2 "" NA12878,NA18555 essv5421 15 18824589 18873066 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18542 nsv96 15 18835203 18867788 CNV Loss Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv96 S 1 0 1 "" NA15510 essv13239 15 18838769 18850150 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19131 nsv438266 15 18844049 18848719 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470655,nssv470649,nssv470651,nssv470654,nssv470653,nssv470650 M 269 0 6 Samples from several populations that are part of the HapMap project. "" NA07345,NA10856,NA11829,NA11832,NA12873,NA12874 esv2751488 15 18846941 19464910 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6989710,essv6982952 M 771 0 1 "" BEC_529 essv1841 15 18854615 19014108 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18976 nsv94536 15 18869608 18869608 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv113114 M 24 "" dgv1n1 15 18870124 20077222 OTHER Inversion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis nsv97,nsv98 M 1 0 0 "" NA15510 nsv832908 15 18898414 19048601 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451421,nssv1451420 M 95 2 0 "" dgv28n68 15 18964502 19133581 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH nsv832910,nsv832909 M 95 20 5 "" nsv482173 15 18997108 19007128 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558534 S 1 1 0 "" KB1 dgv683e1 15 19050502 19484504 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv8825,essv13795,essv10099,essv23222,essv4851,essv4015,essv6888,essv15627,essv13479,essv17065,essv19170,essv17718,essv22090,essv19788,essv2057,essv2863,essv8463,essv3724,essv11785 M 271 0 0 "" NA07029,NA10835,NA12154,NA12865,NA12872,NA18504,NA18508,NA18516,NA18540,NA18605,NA18912,NA18947,NA18949,NA18953,NA18970,NA19130,NA19153,NA19172,NA19192 dgv684e1 15 19050502 20097557 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv24470,essv12528,essv3448,essv11270,essv20413,essv22453,essv4584,essv5838,essv9460,essv21051,essv7552,essv3893,essv4131,essv22407,essv18081,essv1525,essv21788,essv5416,essv21442,essv18865,essv16500,essv3300,essv6308,essv1773,essv22632,essv5166,essv24953,essv11887,essv6046,essv22872,essv4038,essv6229,essv6389,essv11051,essv19939,essv21156,essv18107,essv15360,essv5737,essv7686,essv12174,essv16376,essv2316,essv18766,essv6710,essv5186,essv17625,essv22319,essv24561,essv23452,essv24818,essv17431,essv3118,essv22205 M 271 0 0 "" NA06985,NA06991,NA10830,NA10854,NA10860,NA10861,NA11992,NA11993,NA12043,NA12044,NA12056,NA12145,NA12239,NA12707,NA12717,NA12751,NA12752,NA12753,NA12760,NA12761,NA12813,NA12815,NA12874,NA18524,NA18545,NA18555,NA18563,NA18564,NA18572,NA18593,NA18603,NA18608,NA18609,NA18611,NA18633,NA18635,NA18636,NA18862,NA18940,NA18956,NA18969,NA18972,NA18980,NA18994,NA18997,NA19101,NA19143,NA19172,NA19204,NA19207,NA19208,NA19210,NA19221 nsv832911 15 19068207 19237787 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451468,nssv1451457,nssv1451449,nssv1451452,nssv1451469,nssv1451456,nssv1451455,nssv1451453,nssv1451454,nssv1451460,nssv1451459,nssv1451466,nssv1451465,nssv1451464,nssv1451462,nssv1451471,nssv1451470,nssv1451475,nssv1451476,nssv1451474,nssv1451473,nssv1451463,nssv1451482,nssv1451479,nssv1451477,nssv1451478,nssv1451481,nssv1451480,nssv1451467,nssv1451484,nssv1451451,nssv1451458 M 95 26 6 "" nsv433281 15 19095051 19311292 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463162 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA18956 esv2751489 15 19112164 20773725 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6987481,essv6984031,essv6988745,essv6984032,essv6984033 M 771 1 0 "" BEC_755 dgv685e1 15 19128165 19178275 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv6843,essv24347 M 271 0 0 "" NA10839,NA18558 dgv686e1 15 19128165 20335459 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv12092,essv19719,essv8539,essv11341,essv7963,essv10713,essv13221,essv19026,essv20479,essv9271,essv25186,essv9476,essv23736,essv11409,essv8656,essv24346,essv19820 M 271 0 0 "" NA07034,NA10839,NA10847,NA11840,NA12236,NA12249,NA12813,NA18503,NA18508,NA19099,NA19101,NA19120,NA19128,NA19137,NA19154,NA19192,NA19203 nsv832912 15 19133582 19307109 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451489,nssv1451486,nssv1451498,nssv1451485,nssv1451488,nssv1451487,nssv1451490,nssv1451491,nssv1451497,nssv1451496,nssv1451492,nssv1451495,nssv1451493,nssv1451499,nssv1451502,nssv1451500,nssv1451501,nssv1451506,nssv1451507,nssv1451504,nssv1451503 M 95 18 3 "" dgv97e55 15 19139652 20329239 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv34751,esv34813,esv34902,esv35110,esv2751491 M 771 0 5 "" BEC_458,NA10831,NA12813,NA18515,NA18987 nsv832913 15 19148282 19316549 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451517,nssv1451516,nssv1451520,nssv1451515,nssv1451522,nssv1451519,nssv1451518,nssv1451521,nssv1451514,nssv1451523,nssv1451525,nssv1451524,nssv1451513,nssv1451508,nssv1451509,nssv1451512,nssv1451511,nssv1451510 M 95 18 0 "" dgv687e1 15 19157015 19258683 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2937,essv21910,essv21649 M 271 0 0 "" NA10838,NA12761,NA18972 essv4997 15 19164450 19199509 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18571 dgv98e55 15 19181702 20329239 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv34223,esv2751490 M 771 2 0 "" NA19137,SPC_194 nsv1456 15 19189828 19221336 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2929 S 9 1 0 "" NA18555 essv4998 15 19203197 19403068 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18571 nsv469642 15 19203507 19367828 CNV Gain Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649569 M 265 102 0 Samples from several populations that are part of the HapMap project. "" nsv832915 15 19203508 19367828 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451533,nssv1451531,nssv1451532,nssv1451528,nssv1451536,nssv1451535,nssv1451534,nssv1451542,nssv1451541,nssv1451538,nssv1451540,nssv1451539,nssv1451545,nssv1451544,nssv1451543,nssv1451547,nssv1451546,nssv1451529,nssv1451537,nssv1451526,nssv1451530,nssv1451527 M 95 19 3 "" nsv471675 15 19203508 19503766 CNV Gain+Loss Sharp et al 2005 15918152 BAC_aCGH,FISH Eichler Segmental Duplication BAC array nssv549808,nssv549789,nssv549796,nssv549784,nssv549787,nssv550652,nssv549791,nssv549801,nssv550656,nssv549803,nssv549788,nssv549785,nssv550653,nssv550651,nssv550667,nssv549804,nssv550663,nssv549800,nssv549793,nssv550668,nssv550649,nssv550660,nssv549802,nssv550661,nssv549806,nssv549797,nssv549814,nssv550648,nssv550669,nssv549813,nssv549783,nssv549809,nssv549794,nssv550650,nssv549817,nssv549815,nssv550659,nssv549792,nssv550666,nssv549786,nssv550662,nssv549798,nssv549811,nssv549805,nssv549812,nssv549790,nssv550654,nssv549816,nssv550665,nssv550664,nssv549807,nssv549795,nssv550658,nssv550657,nssv549810,nssv549799,nssv550655 M 48 2 35 "" JK1051,JK1058,JK1061,JK1688,NA10469,NA10470,NA10471,NA10472,NA10473,NA10492,NA10496,NA10967,NA10969,NA10970,NA10971,NA10976,NA10979,NA11323,NA11521,NA11523,NA11776,NA15724,NA15725,NA15727,NA15728,NA15729,NA15730,NA15732,NA15733,NA17014,NA17015,NA17051,NA17052,NA17058,NA17059,P86GA nsv471537 15 19220342 19344722 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv547943,nssv547944,nssv547942 M 3 "" dgv688e1 15 19244796 19349313 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv3500,essv2407 M 271 0 0 "" NA18976,NA18999 dgv689e1 15 19257253 19403068 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2365,essv521 M 271 0 0 "" NA18952,NA18995 esv34233 15 19272564 20773725 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6989075,essv6988125,essv6979209 M 771 0 1 "" NA18507 nsv832916 15 19305060 19467937 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451550,nssv1451552,nssv1451553,nssv1451569,nssv1451551,nssv1451548,nssv1451549,nssv1451556,nssv1451555,nssv1451554,nssv1451557,nssv1451561,nssv1451562,nssv1451559,nssv1451560,nssv1451558,nssv1451563,nssv1451567,nssv1451565,nssv1451566,nssv1451564,nssv1451568,nssv1451570,nssv1451583,nssv1451574,nssv1451572,nssv1451571,nssv1451573,nssv1451575,nssv1451576,nssv1451577,nssv1451582,nssv1451581,nssv1451580,nssv1451578,nssv1451579,nssv1451584 M 95 31 6 "" dgv690e1 15 19305238 19484504 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv298,essv23682,essv5997,essv14267,essv1193 M 271 0 0 "" NA10863,NA18571,NA18951,NA18978,NA19194 nsv471373 15 19305253 19336667 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548099,nssv548101,nssv548098 M 3 "" nsv433282 15 19331534 19456317 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463163 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA12878 nsv469803 15 19347687 19503766 CNV Gain Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649824 M 265 19 0 Samples from several populations that are part of the HapMap project. "" nsv817667 15 19361783 19950423 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417534 S 112 1 0 "" NA18968 essv188 15 19366762 19407629 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18994 dgv691e1 15 19385558 20072344 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv11057,essv8416,essv16600 M 271 0 0 "" NA18860,NA19093,NA19138 nsv433283 15 19408394 19543891 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463164 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA18956 nsv1457 15 19418025 19453343 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2098 S 9 0 1 "" NA18555 essv13315 15 19464675 20774374 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18507 esv2751492 15 19464910 20089400 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6985531,essv6981291,essv6988382 M 771 1 0 "" BEC_379 nsv832917 15 19484741 19628411 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451585,nssv1451593,nssv1451586,nssv1451587,nssv1451588,nssv1451589,nssv1451590,nssv1451592,nssv1451591,nssv1451594,nssv1451595 M 95 4 7 "" nsv509561 15 19568263 19597702 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623670 S 4 1 0 "" NA18994 dgv7n31 15 19764002 19924652 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis nsv471527,nsv471496,nsv471525 M 3 "" dgv9n14 15 19767013 19900599 CNV Loss Cooper et al 2008 18776910 SNP_array nsv433284,nsv433287 M 9 0 2 "" NA12156,NA18507 dgv10n14 15 19767013 20090262 CNV Loss Cooper et al 2008 18776910 SNP_array nsv433285,nsv433286 M 9 0 2 "" NA12878,NA18555 dgv11n14 15 19767013 20093116 CNV Gain Cooper et al 2008 18776910 SNP_array nsv433428,nsv433427 M 9 2 0 "" NA15510,NA19240 nsv510653 15 19770883 20097097 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620078 S 4 0 1 "" NA15510 nsv511041 15 19770883 20097097 OTHER Inversion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622410 S 4 0 0 "" NA10860 dgv692e1 15 19788495 20097557 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv10430,essv3481,essv2781,essv2377,essv15382,essv4111,essv10392,essv15935,essv9992,essv15739,essv7865,essv9632,essv16697,essv4012,essv462,essv22995,essv13118,essv11716,essv6836,essv8091,essv10203,essv13929,essv6607,essv11095,essv23364,essv677,essv7070,essv18349,essv14813,essv24035,essv3679,essv3319,essv9021,essv10890,essv15179,essv17501 M 271 0 0 "" NA07357,NA11994,NA12750,NA12762,NA12873,NA18504,NA18515,NA18529,NA18537,NA18558,NA18579,NA18621,NA18854,NA18859,NA18870,NA18943,NA18948,NA18952,NA18970,NA18975,NA18987,NA18992,NA18995,NA19099,NA19131,NA19132,NA19141,NA19142,NA19152,NA19154,NA19203,NA19206,NA19209,NA19211,NA19222 dgv693e1 15 19788495 20428072 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv14900,essv12433,essv9501,essv18050,essv23213,essv15440,essv8052,essv967,essv8264,essv13229,essv8974,essv21653,essv12891,essv12015,essv10599,essv23316,essv20316,essv21741,essv8576,essv20720,essv611,essv13819,essv12128,essv8507,essv23890,essv2384,essv8900,essv8690,essv5067,essv14939,essv734,essv4914,essv14005 M 271 0 0 "" NA06993,NA10861,NA12156,NA12236,NA12264,NA12752,NA12761,NA12814,NA18521,NA18522,NA18561,NA18570,NA18853,NA18854,NA18912,NA18947,NA18976,NA18981,NA19003,NA19103,NA19129,NA19130,NA19131,NA19132,NA19139,NA19141,NA19152,NA19153,NA19171,NA19173,NA19206,NA19211,NA19222 essv10128 15 19791326 19970466 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19130 nsv442688 15 19803370 20089386 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv469630 15 19808432 19975452 CNV Gain Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649556 M 265 81 2 Samples from several populations that are part of the HapMap project. "" dgv99e55 15 19821400 20089400 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv2751493,esv2751494,esv2751496,esv2751497,esv2751510 M 771 5 0 "" BEC_343,BEC_565,NA19153,SPC_50,SPC_63 dgv100e55 15 19821421 20089383 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv2751502,esv2751503,esv2751508,esv2751501,esv34410,esv34636,esv34885,esv34961,esv34986,esv2751495,esv2751498,esv2751499,esv2751500,esv2751504,esv2751505,esv2751506,esv2751507,esv2751509,esv2751511 M 771 0 19 "" BEC_298,BEC_310,BEC_341,BEC_411,BEC_446,BEC_451,BEC_496,BEC_609,BEC_636,BEC_659,BEC_677,BEC_725,BEC_735,BEC_830,NA12156,NA18558,NA18561,NA19200,SPC_80 dgv101e55 15 19821421 20329239 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv35120,esv34499,esv34906,esv35044 M 771 0 4 "" NA18579,NA18621,NA18952,NA18975 nsv1458 15 19833638 19874988 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5537 S 9 0 1 "" NA19129 nsv832918 15 19849582 20046356 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451606,nssv1451603,nssv1451610,nssv1451602,nssv1451618,nssv1451621,nssv1451600,nssv1451599,nssv1451619,nssv1451620,nssv1451617,nssv1451605,nssv1451604,nssv1451609,nssv1451608,nssv1451607,nssv1451611,nssv1451616,nssv1451601,nssv1451614,nssv1451598,nssv1451597,nssv1451612,nssv1451613,nssv1451615,nssv1451596 M 95 25 1 "" nsv817668 15 19852603 19950423 CNV Gain+Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418402,nssv1417366,nssv1416150,nssv1416799,nssv1416870,nssv1418025,nssv1416397,nssv1416398,nssv1416399,nssv1416161,nssv1416869,nssv1417938,nssv1417936,nssv1416801,nssv1416676,nssv1418211,nssv1416871,nssv1416187,nssv1416188,nssv1418210,nssv1418212,nssv1416800,nssv1415792,nssv1416189,nssv1416677 M 112 16 9 "" NA07357,NA12239,NA12875,NA12878,NA12891,NA12892,NA18852,NA18854,NA18855,NA18856,NA18857,NA18944,NA19116,NA19119,NA19141,NA19142,NA19143,NA19144,NA19145,NA19159,NA19160,NA19161,NA19238,NA19239,NA19240 nsv471374 15 19915066 19915749 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548103,nssv548102,nssv548104 M 3 "" essv19052 15 19923127 19951198 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA11830 dgv694e1 15 19932331 20097557 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv14878,essv8960 M 271 0 0 "" NA18522,NA19200 nsv832919 15 19933374 20094181 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451633,nssv1451622,nssv1451635,nssv1451646,nssv1451636,nssv1451626,nssv1451625,nssv1451627,nssv1451624,nssv1451628,nssv1451634,nssv1451632,nssv1451630,nssv1451631,nssv1451639,nssv1451645,nssv1451640,nssv1451629,nssv1451638,nssv1451637,nssv1451641,nssv1451643,nssv1451644,nssv1451642,nssv1451647,nssv1451648,nssv1451623,nssv1451649,nssv1451650 M 95 23 6 "" nsv433289 15 19956868 20015993 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463170 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA18507 nsv832920 15 19970520 20094181 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451653,nssv1451651,nssv1451654,nssv1451652 M 95 0 4 "" nsv437797 15 19989036 20689167 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467678 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18506 nsv832921 15 20026206 20094181 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451655 S 95 0 1 "" dgv695e1 15 20197558 20428072 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv21260,essv1860,essv19690,essv16394,essv12359,essv8142,essv11554,essv10878,essv17179,essv20579,essv2226,essv17428,essv21508 M 271 0 0 "" NA07056,NA10855,NA12043,NA12264,NA12873,NA18871,NA18960,NA18976,NA19138,NA19139,NA19171,NA19173,NA19206 nsv469776 15 20197681 20382422 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649797 M 265 0 2 Samples from several populations that are part of the HapMap project. "" nsv9181 15 20198407 20252877 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19991,nssv22567,nssv25053,nssv22539,nssv24098,nssv25345,nssv21620,nssv22289,nssv19300,nssv22259,nssv21590,nssv25688,nssv22229,nssv22245,nssv27057,nssv21934,nssv20792,nssv21276 M 31 8 8 Samples from several populations that are part of the HapMap project. "" NA07029,NA10839,NA10863,NA11830,NA12740,NA12802,NA12872,NA18502,NA18504,NA18537,NA18853,NA18860,NA19132,NA19173,NA19221 nsv511042 15 20199889 21034000 OTHER Inversion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622411,nssv621632 M 4 0 0 "" NA10860,NA15510 nsv832922 15 20202342 20325065 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451658,nssv1451657,nssv1451656,nssv1451660,nssv1451659 M 95 2 3 "" nsv433429 15 20203694 20987445 CNV Gain Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463310 S 9 1 0 Samples from several populations that are part of the HapMap project. "" NA18555 nsv832923 15 20217896 20287191 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451664,nssv1451663,nssv1451665,nssv1451662,nssv1451661 M 95 1 4 "" essv21432 15 20231618 20285790 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12717 nsv442359 15 20232440 20646852 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv832924 15 20240468 20398740 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451666 S 95 0 1 "" dgv696e1 15 20253909 20704897 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv14399,essv4139 M 271 0 0 "" NA18507,NA18555 nsv482174 15 20287610 20297366 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558535 S 1 1 0 "" KB1 nsv9182 15 20299130 20300511 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21828,nssv24142,nssv21650 M 31 3 0 Samples from several populations that are part of the HapMap project. "" NA18564,NA18853,NA19240 nsv433290 15 20305097 20685685 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463171 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA18507 nsv456612 15 20306549 20635884 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533919 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00573 dgv287n27 15 20306549 20691555 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv456626,nsv456624,nsv456625,nsv456631,nsv456628,nsv456622,nsv456630,nsv456627,nsv456623 M 1557 9 0 "" 1780862252_A,1780862444_A,1798860567_A,HGDP00239,HGDP00428,HGDP00701,HGDP00969,HGDP01103,HGDP01348 esv34463 15 20329200 20773725 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6986868,essv6979437,essv6979438,essv6979439 M 771 1 0 "" NA18555 essv24027 15 20335459 20457011 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12873 dgv8n31 15 20357001 20464046 CNV Deletion Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis nsv471449,nsv471333 M 3 "" nsv1459 15 20359945 20398904 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5539,nssv2099 M 9 2 0 "" NA18555,NA19129 nsv9183 15 20367145 20386250 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24168,nssv27067,nssv22319,nssv21680,nssv22597,nssv23007,nssv24967,nssv25740,nssv20822,nssv25078,nssv21526,nssv20021 M 31 1 11 Samples from several populations that are part of the HapMap project. "" NA07029,NA11830,NA12155,NA12872,NA18517,NA18552,NA18853,NA18860,NA19132,NA19173,NA19221,NA19240 nsv95004 15 20375461 20375579 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv113582 M 24 "" nsv94355 15 20375762 20381664 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv112933 M 24 "" nsv94485 15 20382646 20382717 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv113063 M 24 "" nsv471375 15 20384836 20425332 CNV Deletion Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548105 S 3 "" nsv456635 15 20414442 20424239 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533931 S 1557 0 1 "" NINDS_145 essv13814 15 20422689 20588961 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18853 nsv456636 15 20427493 20635884 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533932 S 1557 0 1 "" 1780862356_A nsv469615 15 20428582 20578275 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649539 M 265 0 0 Samples from several populations that are part of the HapMap project. "" essv24315 15 20457011 20547654 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA11882 nsv832926 15 20462693 20600001 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451669,nssv1451668,nssv1451667 M 95 1 2 "" nsv9184 15 20475140 20477577 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22275,nssv20852 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA07029,NA18537 essv25143 15 20498385 20547654 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA11839 essv19361 15 20498385 20584281 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA07019 nsv471376 15 20507196 20555043 CNV Deletion Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548106 S 3 "" dgv697e1 15 20510199 20556643 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv23283,essv19356,essv18889 M 271 0 0 "" NA06985,NA07345,NA12717 nsv94774 15 20515369 20515369 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv113352 M 24 "" nsv469667 15 20534111 20703878 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649596 M 265 0 1 Samples from several populations that are part of the HapMap project. "" dgv9n31 15 20546001 20636690 CNV Deletion Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis nsv471512,nsv471511 M 3 "" essv18519 15 20555858 20584363 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12763 nsv471377 15 20556790 20585849 CNV Deletion Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548107 S 3 "" nsv471378 15 20594722 20638284 CNV Deletion Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548108 S 3 "" nsv94557 15 20608316 20615821 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv113135 M 24 "" nsv1460 15 20615844 20697030 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2100 S 9 0 1 "" NA18555 nsv9185 15 20638816 20683073 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20051,nssv21234 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA12872,NA18975 esv32994 15 20641685 20679775 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv96316 S 51 0 1 "" 22371 nsv442360 15 20659585 20675140 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv832927 15 20681465 20848143 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451670 S 95 1 0 "" nsv9186 15 20729790 20733738 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25103 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19132 nsv9187 15 20757317 20759164 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25128 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19132 nsv9188 15 20760941 20806479 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27077,nssv25153 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA19132,NA19221 nsv832928 15 20762791 20918715 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451671 S 95 1 0 "" dgv698e1 15 20762791 21066294 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv11192,essv23022,essv22531,essv8309,essv3007,essv71,essv13168,essv556,essv2613,essv16757,essv12423,essv19218,essv20212,essv24246,essv7040,essv13590,essv15040,essv15731,essv9016,essv21669,essv12789,essv2213,essv19647,essv6358,essv14198,essv13739,essv16666,essv23554,essv21204,essv23375,essv19404,essv23794,essv22520,essv8345,essv4288,essv9121,essv23870,essv4775,essv10858,essv7315,essv22907,essv8130,essv17201,essv17916,essv21009,essv16306,essv21447,essv4392,essv12641,essv16004,essv1957,essv17574,essv13703,essv383 M 271 0 0 "" NA06991,NA06993,NA07348,NA10838,NA10856,NA11830,NA11832,NA11840,NA11882,NA12003,NA12248,NA12264,NA12717,NA12750,NA12760,NA12762,NA12763,NA12812,NA12814,NA18500,NA18501,NA18570,NA18573,NA18603,NA18609,NA18612,NA18620,NA18858,NA18860,NA18871,NA18872,NA18959,NA18960,NA18971,NA18981,NA18990,NA18991,NA18998,NA19102,NA19103,NA19119,NA19120,NA19127,NA19129,NA19131,NA19132,NA19140,NA19142,NA19153,NA19161,NA19171,NA19206,NA19211,NA19238 dgv699e1 15 20762791 21365850 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv10548,essv24717,essv18720 M 271 0 0 "" NA11829,NA12874,NA19240 nsv433430 15 20796527 21065361 CNV Gain Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463311 S 9 1 0 Samples from several populations that are part of the HapMap project. "" NA19240 nsv832929 15 20817422 21003113 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451672,nssv1451673,nssv1451674 M 95 3 0 "" nsv9189 15 20852984 21155521 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22861,nssv22686,nssv21294,nssv19330,nssv21964,nssv21740,nssv22803,nssv25420,nssv27107,nssv25017,nssv25762,nssv20242,nssv21925,nssv24125,nssv21710,nssv21858,nssv21586,nssv24924,nssv24949,nssv21626,nssv22627,nssv21543,nssv27087,nssv24992,nssv21616,nssv24869,nssv25784,nssv22349,nssv21573,nssv21955,nssv21918,nssv22715,nssv21888,nssv21556,nssv20912,nssv24194,nssv21985,nssv20272,nssv20882,nssv19699,nssv21656,nssv25370,nssv23093,nssv23336,nssv22774,nssv22569,nssv25395,nssv22832,nssv21264,nssv25208,nssv21306,nssv23035,nssv27097,nssv22657 M 31 13 19 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10863,NA11830,NA12155,NA12740,NA12802,NA18502,NA18504,NA18517,NA18552,NA18564,NA18572,NA18853,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19144,NA19173,NA19221,NA19240 dgv700e1 15 20894308 21066294 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv18169,essv18289 M 271 0 0 "" NA10846,NA12057 nsv471379 15 20986537 20999864 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548109,nssv548110,nssv548112 M 3 "" nsv482175 15 20986537 20999864 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558536 S 1 1 0 "" KB1 nsv832930 15 21117261 21206778 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451675 S 95 0 1 "" nsv9190 15 21160864 21163215 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25233 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19132 nsv510654 15 21166511 21252672 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618923 S 4 0 1 "" NA10860 nsv518410 15 21200233 21244499 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695841 S 2026 0 1 "" nsv456638 15 21200233 21270922 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533933 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01330 dgv288n27 15 21200233 21326637 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv456639,nsv456641,nsv456642 M 1557 3 0 "" HGDP01063,HGDP01072,HGDP01074 nsv1461 15 21203223 21236433 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2101 S 9 0 1 "" NA18555 nsv832931 15 21212934 21365850 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451676 S 95 1 0 "" nsv9192 15 21227472 21230323 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25042,nssv21603,nssv20302,nssv19729,nssv20942 M 31 0 5 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA18517,NA18572,NA18942 nsv522641 15 21244499 21343866 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv706040 S 2026 1 0 "" esv32644 15 21250564 21250823 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93676 S 51 1 0 "" 21972 nsv94785 15 21316963 21317028 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv113363 M 24 "" nsv94891 15 21317172 21317172 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv113469 M 24 "" nsv525483 15 21525066 21526575 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701612 S 2026 0 1 "" nsv1462 15 21535498 21549305 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5540 S 9 0 1 "" NA19129 nsv510655 15 21578517 21626577 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618924 S 4 0 1 "" NA10860 nsv9193 15 21605507 21791826 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23121,nssv21633,nssv24151,nssv27117,nssv25806,nssv20332,nssv22599,nssv22305,nssv20111,nssv21800,nssv21994,nssv20972,nssv22379,nssv24220,nssv24974,nssv19625,nssv25067,nssv22217,nssv25258,nssv22890,nssv19360,nssv21324,nssv21948,nssv23364,nssv22015,nssv19789,nssv21336,nssv21646,nssv21686 M 31 29 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10847,NA10863,NA11830,NA12155,NA12740,NA12802,NA12872,NA18504,NA18517,NA18537,NA18552,NA18563,NA18564,NA18572,NA18853,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19144,NA19173,NA19221,NA19240 dgv701e1 15 21606530 21610088 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv19489,esv941 M 271 0 0 "" NA12750 nsv442689 15 21606534 21610186 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv518053 15 21609833 21612590 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694195 S 2026 0 1 "" nsv1463 15 21610456 21643325 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2102 S 9 1 0 "" NA18555 dgv42n6 15 21658807 21658969 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv94321,nsv94411 M 24 "" nsv527812 15 21697815 21698499 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704306 S 2026 0 1 "" nsv456643 15 21732081 21767963 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533938 S 1557 0 1 "" 1782681169_A nsv522679 15 21753780 21755026 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv706087 S 2026 1 0 "" esv2751512 15 21785862 22023100 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6988810,essv6987598,essv6984482,essv6984483,essv6984484 M 771 1 0 "" BEC_711 nsv9194 15 21803314 21816040 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19655 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA10847 essv22238 15 21805431 22153795 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12044 dgv702e1 15 21805431 22452007 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv6666,essv11601,essv24520,essv14470,esv844,essv23951,essv12527 M 271 0 0 "" NA12802,NA12814,NA18608,NA19201,NA19207 nsv832932 15 21805449 21990643 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451677 S 95 0 1 "" nsv442361 15 21809024 21826358 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv289n27 15 21855761 22083695 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv456647,nsv456646,nsv456644 M 1557 0 3 "" 1782681099_A,HGDP00313,HGDP00574 nsv9195 15 21875893 22345515 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25912,nssv22335,nssv21032,nssv25475,nssv22045,nssv20362,nssv25498,nssv25521,nssv25117,nssv25544,nssv25828,nssv27127,nssv19540,nssv19480,nssv19510,nssv21002,nssv19390,nssv21896,nssv23149,nssv25092,nssv19450,nssv21716,nssv21746,nssv25567,nssv25870,nssv22135,nssv21836,nssv25849,nssv25891,nssv23205,nssv21866,nssv22075,nssv23177,nssv22024,nssv22919,nssv21806 M 31 3 12 Samples from several populations that are part of the HapMap project. "" NA07029,NA10839,NA11830,NA12155,NA12802,NA18502,NA18517,NA18537,NA18860,NA18942,NA18980,NA19007,NA19221 nsv517191 15 21880811 22365675 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv666206,nssv667677,nssv686675,nssv691014,nssv668422,nssv681606,nssv688152,nssv673176,nssv671771,nssv657316,nssv671845,nssv672348,nssv691999,nssv652765,nssv673080,nssv654207,nssv661491,nssv668843,nssv665746,nssv667723,nssv701268,nssv673504,nssv653974,nssv685958,nssv680508,nssv685978,nssv683886,nssv686737,nssv661102,nssv655709,nssv688419,nssv664479,nssv686492,nssv674409,nssv687545,nssv705355,nssv679019,nssv671394,nssv685757,nssv667494,nssv672441,nssv672563,nssv655650,nssv658766,nssv679076,nssv687323,nssv662141,nssv659715,nssv674251,nssv704509,nssv668333,nssv664728,nssv672262,nssv656393,nssv673559,nssv670835,nssv688221,nssv655327,nssv667215,nssv674471,nssv655806,nssv665610,nssv693461,nssv661406,nssv671869,nssv667495,nssv689260,nssv668154,nssv660622,nssv706011,nssv678047,nssv673946,nssv684499,nssv652198,nssv673706,nssv659849,nssv688082,nssv684332,nssv686947,nssv686808,nssv695530,nssv691473,nssv691351,nssv663261,nssv664915,nssv674556,nssv681691,nssv700266,nssv685636,nssv663473,nssv663472,nssv669474,nssv662272,nssv663983,nssv676656,nssv663942,nssv685436,nssv655168,nssv690953,nssv679400,nssv665222,nssv658167,nssv654001,nssv674364,nssv689333,nssv678939,nssv681422,nssv694852,nssv678893,nssv670093,nssv693567,nssv668586,nssv679615,nssv685837,nssv666047,nssv681690,nssv660100,nssv664499,nssv657297,nssv652046,nssv684500,nssv672858,nssv704699,nssv691646,nssv671912,nssv654316,nssv687518,nssv693760,nssv690442,nssv655628,nssv667565,nssv691976,nssv662984,nssv652623,nssv668009,nssv668100,nssv685437,nssv674604,nssv656632 M 2026 44 95 "" nsv832933 15 21886511 22055073 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451679,nssv1451678,nssv1451680 M 95 3 0 "" essv13971 15 21892118 21931984 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19098 essv19124 15 21892118 22072791 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12044 dgv102e55 15 21892118 22076598 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv2751513,esv2751517,esv2751518 M 771 0 3 "" BEC_515,BEC_560,BEC_589 dgv103e55 15 21892118 22150299 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv2751514,esv2751515 M 771 0 2 "" BEC_336,BEC_58 dgv290n27 15 21897319 22036253 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv456657,nsv456653,nsv456665,nsv456645 M 1557 0 4 "" 1780854535_A,HGDP00285,HGDP00581,HGDP00892 esv33584 15 21901594 22021522 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98154 S 51 0 1 "" 21772 nsv456648 15 21905523 21984535 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533943 S 1557 0 1 "" 1782681176_A dgv291n27 15 21905523 21985041 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv456649,nsv456650 M 1557 2 0 "" HGDP00155,NINDS_103 dgv292n27 15 21905523 22036253 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv456654,nsv456652 M 1557 2 0 "" 1780854511_A,HGDP00445 nsv817669 15 21905523 22036253 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417006 S 112 0 1 "" NA12044 dgv293n27 15 21905523 22083695 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv456659,nsv456669,nsv456655,nsv456666 M 1557 4 0 "" HGDP00888,HGDP00925,HGDP01231,NINDS_240 nsv456656 15 21905523 22218390 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533951 S 1557 1 0 "" NINDS_62 esv2751516 15 21908300 22005479 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6983937,essv6983936,essv6987451,essv6983938 M 771 1 0 "" BEC_735 dgv294n27 15 21927715 22023095 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv456658,nsv456661 M 1557 0 2 "" HGDP00356,HGDP00724 dgv703e1 15 21931984 22001524 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv20684,essv25087,essv2740 M 271 0 0 "" NA12802,NA12814,NA18965 nsv456660 15 21932976 21985041 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533955 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00359 nsv817670 15 21932976 21985041 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417491 S 112 0 1 "" NA18965 nsv456664 15 21932976 22014147 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533959 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00535 nsv442362 15 21937718 21985625 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv295n27 15 21948655 22036253 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv456673,nsv456672,nsv456675,nsv456668,nsv456667,nsv456670,nsv456671 M 1557 0 7 "" HGDP00058,HGDP00392,HGDP00444,HGDP00538,HGDP00542,HGDP00673,HGDP01362 esv2751519 15 21948712 22098514 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6985224,essv6985223 M 771 1 0 "" SPC_128 nsv456676 15 21959459 22083695 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533971 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00090 dgv704e1 15 21971346 22295736 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv13253,essv1979,essv1593 M 271 0 0 "" NA18942,NA19201 dgv296n27 15 21972416 22072791 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv456681,nsv456677 M 1557 0 2 "" HGDP00956,HGDP01244 nsv456678 15 21972416 22218390 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533973 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01096 dgv297n27 15 21979391 22036253 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv456680,nsv456679 M 1557 0 2 "" HGDP00323,HGDP00740 nsv456682 15 22008680 22083695 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533977 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00952 essv12056 15 22011887 22131052 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19238 nsv817671 15 22019822 22083695 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416873 S 112 0 1 "" NA19238 dgv705e1 15 22022195 22380634 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv6480,essv20698,essv624 M 271 0 0 "" NA12802,NA18636,NA18998 nsv442690 15 22029857 22065565 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" esv33262 15 22038903 22055582 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99554 S 51 1 0 "" 22335 nsv510390 15 22052694 22058694 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622252 S 4 0 1 "" NA10860 dgv104e55 15 22054753 22300700 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv2751522,esv34880,esv2751521 M 771 3 0 "" BEC_513,BEC_594,NA19201 dgv105e55 15 22054753 22300700 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv34473,esv34877,esv2751520 M 771 0 3 "" NA18636,NA19207,SPC_20 esv34999 15 22054753 22383764 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6978300,essv6978299,essv6987367 M 771 0 1 "" NA18998 dgv298n27 15 22070875 22218390 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv456691,nsv456694,nsv456686,nsv456703,nsv456697,nsv456704,nsv456690,nsv456693,nsv456698 M 1557 9 0 "" HGDP00158,HGDP00637,HGDP00694,HGDP00881,HGDP00899,HGDP01067,HGDP01076,HGDP01305,HGDP01396 dgv299n27 15 22070875 22218390 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv456684,nsv456695,nsv456689,nsv456701,nsv456688,nsv456692,nsv456683,nsv456687,nsv456699,nsv456700,nsv456702 M 1557 0 11 "" HGDP00060,HGDP00100,HGDP00412,HGDP00428,HGDP00450,HGDP00747,HGDP00972,HGDP01194,HGDP01214,HGDP01246,HGDP01304 dgv300n27 15 22070875 22336293 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv456705,nsv456713,nsv456709,nsv456716,nsv456708,nsv456706,nsv456719,nsv456714,nsv456721,nsv456717,nsv456722,nsv456711 M 1557 12 0 "" 1780846320_A,1780854105_A,1780854337_A,1780854444_A,1780862197_A,1780862372_A,1780862410_A,1782681023_A,1782681080_A,1782681142_A,1798860108_A,1798860217_A dgv301n27 15 22070875 22336293 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv456710,nsv456715,nsv456720,nsv456712 M 1557 0 4 "" 1780862078_A,1780862202_A,1780862519_A,1782681195_A dgv706e1 15 22072791 22300674 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv6926,essv5871 M 271 0 0 "" NA18555,NA18608 dgv106e55 15 22098514 22369000 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv2751525,esv34675,esv2751523 M 771 3 0 "" BEC_688,NA19205,SPC_2 dgv707e1 15 22098514 22452007 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv535,essv16475,essv6220,essv25090,essv16899,essv15923 M 271 0 0 "" NA12814,NA18636,NA18998,NA19139,NA19205 dgv708e1 15 22131584 22300674 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2932,essv4177,essv9954 M 271 0 0 "" NA18555,NA19007,NA19204 dgv107e55 15 22140100 22300700 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv2751524,esv34242,esv34729 M 771 3 0 "" BEC_396,NA12802,NA12814 essv724 15 22150223 22232921 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18940 nsv817672 15 22155995 22202117 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417293 S 112 0 1 "" NA18608 nsv442363 15 22161116 22202157 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv1464 15 22197270 22278664 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5541 S 9 0 1 "" NA19129 dgv302n27 15 22200344 22368232 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv456724,nsv456725 M 1557 2 0 "" HGDP01310,HGDP01377 nsv456723 15 22200344 22368232 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534018 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01298 nsv832934 15 22203543 22386839 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451688,nssv1451683,nssv1451687,nssv1451685,nssv1451686,nssv1451692,nssv1451691,nssv1451690,nssv1451684,nssv1451689,nssv1451682,nssv1451681 M 95 12 0 "" dgv709e1 15 22218390 22342209 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv18674,essv24341 M 271 0 0 "" NA11882,NA12056 nsv442691 15 22226226 22269689 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv438267 15 22228836 22265725 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470658,nssv470656,nssv470657 M 269 0 3 Samples from several populations that are part of the HapMap project. "" NA10835,NA11882,NA12761 esv33790 15 22232480 22272810 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv94702,essv98968 M 51 0 2 "" 21791,21938 nsv442692 15 22276386 22297003 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv832935 15 22327673 22434972 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451693 S 95 1 0 "" nsv442364 15 22329509 22343467 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv9196 15 22349714 22378088 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20392,nssv19570 M 31 1 1 Samples from several populations that are part of the HapMap project. "" NA12802,NA18942 nsv1465 15 22389213 22424505 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1240 S 9 1 0 "" NA19240 nsv507769 15 22446163 22452163 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623178,nssv617894 M 4 2 0 "" CHM,NA18994 nsv522887 15 22568288 22574040 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698545 S 2026 0 1 "" nsv519869 15 22589304 22589546 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv692487,nssv691104,nssv672070,nssv659192 M 2026 0 4 "" nsv525405 15 22589304 22595503 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701529 S 2026 0 1 "" nsv817674 15 22589304 22598069 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416874 S 112 0 1 "" NA19239 nsv523104 15 22589304 22606395 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698800 S 2026 0 1 "" dgv710e1 15 22606371 22689056 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv13237,esv883 M 271 0 0 "" NA19131 essv12116 15 22608408 22646980 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19173 nsv9197 15 22615585 22642722 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22409 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19173 nsv817675 15 22617453 22629880 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416597,nssv1416598 M 112 0 2 "" NA19172,NA19173 nsv515875 15 22617453 22639308 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv685959,nssv690037,nssv678048,nssv667266,nssv681157,nssv671395,nssv661789,nssv665117,nssv704101,nssv692118 M 2026 0 10 "" nsv456730 15 22617453 22666219 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534022 S 1557 0 1 "" 1780862101_A nsv442365 15 22620644 22635939 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" essv16379 15 22622873 22629835 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19172 esv34441 15 22629000 22630108 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6980428,essv6987791 M 771 0 1 "" NA19172 nsv516596 15 22643359 22666219 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv690342,nssv657275,nssv672071,nssv657533,nssv668543,nssv692535,nssv692488,nssv655083,nssv673177,nssv660369,nssv666551,nssv656969,nssv692169,nssv688926,nssv673475,nssv670161,nssv664975,nssv681827,nssv678187,nssv662164,nssv652459,nssv663069,nssv670236,nssv652886,nssv684906,nssv669050,nssv662195,nssv651938,nssv691105,nssv686101,nssv679195,nssv694196,nssv689750,nssv693932,nssv666782,nssv652596,nssv671705 M 2026 0 37 "" nsv9198 15 22648819 22651621 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27137 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19221 nsv9199 15 22658051 22669493 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22165,nssv25933,nssv25142,nssv25283,nssv25590,nssv23422 M 31 0 6 Samples from several populations that are part of the HapMap project. "" NA18502,NA18517,NA18860,NA18980,NA19132,NA19144 nsv817676 15 22658176 22659931 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416802,nssv1416803 M 112 0 2 "" NA19160,NA19161 nsv510656 15 22663610 22719766 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620080 S 4 0 1 "" NA15510 nsv456731 15 22949437 23000830 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534023 S 1557 0 1 "" NINDS_184 esv33464 15 22967152 23432303 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100853,essv99847 M 51 2 0 "" 21656,22086 nsv442366 15 22972700 22981332 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv517360 15 22974169 23048383 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv682259,nssv696030,nssv659329,nssv663541,nssv652238,nssv696699,nssv674531,nssv682283,nssv692797,nssv693282,nssv684825,nssv692746,nssv667938,nssv670778,nssv683183,nssv676338,nssv692627,nssv682319,nssv660054,nssv685663,nssv669450,nssv680793,nssv658377,nssv669796,nssv651812,nssv660121,nssv678594,nssv677940 M 2026 1 27 "" nsv1467 15 23020941 23059757 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9957 S 9 0 1 "" NA18507 nsv1468 15 23173339 23203093 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5542 S 9 1 0 "" NA19129 nsv832937 15 23198337 23368074 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451694 S 95 0 1 "" nsv510391 15 23389702 23395702 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621419 S 4 0 1 "" NA15510 nsv9200 15 23405591 23407370 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22629 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA12740 nsv456732 15 23474311 23488126 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534024 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00819 nsv527556 15 23475632 23476288 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704017 S 2026 0 1 "" nsv9201 15 23482224 23483906 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21978,nssv20452,nssv21366,nssv24177,nssv19819,nssv22659 M 31 5 1 Samples from several populations that are part of the HapMap project. "" NA10863,NA12740,NA18504,NA18564,NA18572,NA18942 dgv143n21 15 23670153 23678230 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv518809,nsv519720 M 2026 0 2 "" nsv832938 15 23873180 24052544 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451695 S 95 1 0 "" nsv832939 15 23937860 24028356 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451696 S 95 1 0 "" nsv522418 15 23944295 23953694 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705771 S 2026 0 1 "" nsv456733 15 24110136 24187765 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534025 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01187 nsv523476 15 24115184 24130941 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699238 S 2026 0 1 "" dgv144n21 15 24310156 24446174 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv524934,nsv525893 M 2026 2 0 "" nsv469894 15 24354353 24542057 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649915 M 265 0 0 Samples from several populations that are part of the HapMap project. "" nsv456734 15 24900346 24954817 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534026 S 1557 0 1 "" 1780862101_A nsv437173 15 24981296 24999114 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467054 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA10851 nsv9203 15 24985426 24992820 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22688,nssv24246,nssv24203,nssv24999,nssv22195,nssv25613,nssv21676,nssv22365,nssv21354,nssv21663,nssv20141,nssv25308,nssv25984,nssv22054,nssv21830,nssv21926,nssv21092,nssv19685,nssv22948,nssv23233,nssv19600,nssv22247,nssv20482,nssv27177,nssv23450,nssv22469,nssv22008,nssv25197,nssv19849,nssv21456 M 31 30 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10847,NA10863,NA11830,NA12155,NA12740,NA12802,NA12872,NA18502,NA18504,NA18517,NA18537,NA18552,NA18563,NA18564,NA18572,NA18853,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19144,NA19173,NA19221,NA19240 nsv438268 15 24992741 25000416 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470659,nssv470660 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA10851,NA12056 nsv525863 15 25030590 25050032 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702060 S 2026 1 0 "" nsv524957 15 25059321 25072946 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700978 S 2026 0 1 "" dgv711e1 15 25060215 25335769 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv121,essv22660 M 271 0 0 "" NA12752 nsv94466 15 25065989 25066092 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv113044 M 24 "" nsv94798 15 25152911 25152911 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv113376 M 24 "" nsv9204 15 25289965 25291796 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25333 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19132 esv32599 15 25301194 25457050 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99495 S 51 1 0 "" 22335 nsv832940 15 25402066 25564738 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451697 S 95 0 1 "" nsv1469 15 25500504 25535399 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4142 S 9 1 0 "" NA12878 nsv1470 15 25584526 25607437 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5543 S 9 0 1 "" NA19129 nsv442693 15 25591185 25601401 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv1471 15 25697533 25717399 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2103 S 9 0 1 "" NA18555 nsv94457 15 25767608 25767608 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv113035 M 24 "" nsv456735 15 25822196 25911504 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534027 S 1557 0 1 "" 1780854417_A nsv1472 15 25838807 25872189 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5544 S 9 1 0 "" NA19129 essv14482 15 26086062 26254807 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19202 dgv712e1 15 26086062 26378746 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv21172,essv4372,essv10524,essv4784 M 271 0 0 "" NA11830,NA18573,NA18620,NA19240 dgv713e1 15 26086062 26763830 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1829,essv13669,essv24251,essv1011,essv21423,essv13592,essv20558,essv16735,essv10294,essv18742,essv16711,essv19661,essv81,essv24654,esv293,essv10643,essv23036,essv20184,essv10834,essv17120,essv16045,essv2220 M 271 0 0 "" NA07056,NA10856,NA11829,NA11832,NA12264,NA12717,NA12812,NA12874,NA18501,NA18506,NA18855,NA18871,NA18872,NA18960,NA18976,NA18991,NA19005,NA19119,NA19127,NA19142,NA19171 nsv469883 15 26118311 26332902 CNV Gain Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649904 M 265 1 0 Samples from several populations that are part of the HapMap project. "" nsv9205 15 26122560 26159247 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22225,nssv25636,nssv25024,nssv27187,nssv21384,nssv21706,nssv24272 M 31 5 2 Samples from several populations that are part of the HapMap project. "" NA18502,NA18552,NA18972,NA18975,NA18980,NA19221,NA19240 nsv9206 15 26168147 26175237 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19630,nssv22499 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA12802,NA19173 nsv9207 15 26184487 26190890 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21474 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18975 dgv714e1 15 26199529 26641134 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv3057,essv21286,essv8153,essv12336,essv21560 M 271 0 0 "" NA10855,NA12873,NA18981,NA19138,NA19206 nsv9208 15 26200607 26246293 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22977,nssv24328,nssv22717,nssv22255 M 31 1 3 Samples from several populations that are part of the HapMap project. "" NA11830,NA12740,NA18980,NA19240 nsv433431 15 26219120 26343350 CNV Gain Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463312 S 9 1 0 Samples from several populations that are part of the HapMap project. "" NA19240 nsv7261 15 26220491 26616591 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10926 S 9 0 0 "" NA15510 nsv9209 15 26251815 26252620 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21693,nssv21122 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048 nsv9210 15 26263442 26265287 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25659,nssv21956,nssv22038,nssv24354,nssv21860 M 31 5 0 Samples from several populations that are part of the HapMap project. "" NA18502,NA18564,NA18853,NA19007,NA19240 nsv9211 15 26308972 26565589 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25383,nssv26004,nssv21986,nssv22174,nssv21980,nssv20171,nssv21920,nssv22737,nssv22395,nssv22708,nssv22679,nssv22144,nssv23006,nssv27207,nssv21486,nssv22805,nssv22619,nssv26024,nssv25433,nssv22010,nssv22796,nssv25408,nssv21182,nssv22315,nssv23034,nssv21890,nssv25358,nssv22589,nssv22204,nssv22114,nssv24229,nssv22285,nssv22649,nssv27197,nssv21152,nssv21950,nssv24255,nssv22529,nssv22559,nssv22776 M 31 7 9 Samples from several populations that are part of the HapMap project. "" NA07029,NA10839,NA10863,NA11830,NA12740,NA12872,NA18504,NA18537,NA18853,NA18860,NA18980,NA19007,NA19132,NA19173,NA19221 nsv509562 15 26328672 26345831 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621006,nssv623671 M 4 2 0 "" NA15510,NA18994 nsv510657 15 26369662 26497896 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622692,nssv620081 M 4 0 2 "" NA15510,NA18994 nsv832941 15 26487795 26681850 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451700,nssv1451699,nssv1451698 M 95 2 1 "" nsv469678 15 26599826 26763830 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649608 M 265 0 0 Samples from several populations that are part of the HapMap project. "" dgv715e1 15 26599827 26763830 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv14187,essv11128,essv23344,essv20665,essv7325,essv15469 M 271 0 0 "" NA12750,NA12892,NA18505,NA18570,NA19140,NA19211 nsv471678 15 26599827 26763830 CNV Loss Sharp et al 2005 15918152 BAC_aCGH,FISH Eichler Segmental Duplication BAC array nssv549971,nssv549970,nssv549953,nssv549963,nssv549975,nssv549964,nssv549960,nssv549957,nssv549967,nssv549956,nssv549959,nssv549965,nssv549974,nssv549969,nssv549972,nssv549976,nssv549973,nssv549955,nssv549961,nssv549962,nssv549978,nssv549954,nssv549958,nssv549968,nssv549977,nssv549966 M 48 0 26 "" JK1051,JK1058,JK1061,NA10470,NA10472,NA10473,NA10492,NA10494,NA10967,NA10969,NA10970,NA11323,NA11521,NA11523,NA11776,NA15730,NA15731,NA15732,NA16688,NA17015,NA17017,NA17020,NA17051,NA17052,NA17059,P86GA nsv9212 15 26608799 26611114 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22068,nssv24380,nssv22040,nssv22016,nssv22234,nssv25681 M 31 6 0 Samples from several populations that are part of the HapMap project. "" NA10839,NA18502,NA18564,NA18853,NA19007,NA19240 nsv9215 15 26622123 26622738 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21723,nssv21212 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048 nsv9216 15 26627992 26700667 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21534,nssv25074,nssv24406,nssv25487,nssv25733,nssv25099,nssv21796,nssv21504,nssv27217,nssv22375,nssv23092,nssv22345,nssv21736,nssv25049 M 31 5 6 Samples from several populations that are part of the HapMap project. "" NA11830,NA18502,NA18552,NA18972,NA18975,NA18980,NA19132,NA19221,NA19240 nsv832942 15 26658973 26823368 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451702,nssv1451701,nssv1451703 M 95 3 0 "" nsv9217 15 26700567 26709981 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24432,nssv23120,nssv21826 M 31 1 2 Samples from several populations that are part of the HapMap project. "" NA11830,NA18552,NA19240 nsv9218 15 26719786 26725185 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25755 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18502 nsv9219 15 26756810 26781002 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23148,nssv27227 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA11830,NA19221 nsv522597 15 26768706 28153539 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705987 S 2026 0 1 "" esv2751526 15 26768706 28766520 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6989285,essv6989576,essv6982118,essv6982119 M 771 0 1 "" BEC_521 nsv527255 15 26798209 28153539 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703659 S 2026 1 0 "" nsv507770 15 26801865 26807865 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623180,nssv620575 M 4 2 0 "" NA15510,NA18994 nsv9220 15 26809863 26812517 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25510 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19132 nsv9221 15 26859503 26863628 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25777 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18502 nsv9222 15 26875299 26877229 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24311,nssv25222,nssv21516,nssv21242,nssv21783,nssv22834 M 31 6 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10863,NA12740,NA18504,NA18517 nsv9223 15 26892183 26895536 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22455 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18537 nsv516384 15 27000239 27075712 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv655931,nssv667939,nssv654752,nssv676684 M 2026 0 4 "" nsv9224 15 27026907 27028550 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26044 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18860 nsv9226 15 27071575 27072777 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22405 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18980 nsv1473 15 27107945 27152397 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2104 S 9 0 1 "" NA18555 nsv9227 15 27132904 27135118 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27237,nssv26063,nssv24458,nssv23176,nssv23261,nssv22264,nssv22128,nssv22046 M 31 8 0 Samples from several populations that are part of the HapMap project. "" NA10839,NA11830,NA12155,NA18564,NA18860,NA19007,NA19221,NA19240 nsv515798 15 27147693 27225769 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv657133,nssv689214,nssv697105,nssv657071,nssv667283,nssv673335,nssv685533,nssv667940,nssv685637,nssv674435,nssv669148,nssv655233,nssv676232,nssv685482,nssv674745,nssv697106,nssv699590,nssv680856,nssv682130,nssv677504,nssv691870,nssv664819,nssv679219,nssv655522,nssv677652,nssv688880,nssv676848 M 2026 2 25 "" nsv524362 15 27169093 27235349 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700273 S 2026 0 1 "" nsv9228 15 27197623 27202486 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22485 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18537 nsv94575 15 27198775 27199196 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv113153 M 24 "" nsv9229 15 27237584 27241119 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22076 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19007 nsv515660 15 27330404 27351927 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv671370,nssv665492,nssv664278,nssv681372,nssv685292,nssv678067,nssv674085,nssv671046,nssv687493,nssv680961,nssv669149,nssv669926 M 2026 12 0 "" nsv525604 15 27376764 27410092 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701748 S 2026 1 0 "" nsv94404 15 27408861 27415637 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv112982 M 24 "" esv33949 15 27450911 27455894 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101253 S 51 0 1 "" 21618 nsv832943 15 27575626 27711576 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451705,nssv1451704 M 95 1 1 "" dgv303n27 15 27600069 27677098 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv456738,nsv456737 M 1557 0 2 "" 1780862444_A,1780862574_A nsv1474 15 27622489 27652292 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6624,nssv10043,nssv10927,nssv1243,nssv5545,nssv2105,nssv4143 M 9 7 0 "" NA12156,NA12878,NA15510,NA18555,NA18956,NA19129,NA19240 nsv511043 15 27630199 27648630 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618676,nssv622412,nssv624348,nssv621633 M 4 0 0 "" CHM,NA10860,NA15510,NA18994 nsv99 15 27636922 27652292 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv99 S 1 1 0 "" NA15510 nsv832944 15 27648354 27869349 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451706,nssv1451707,nssv1451708 M 95 1 2 "" nsv9230 15 27687785 27690547 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26082,nssv21564,nssv22136,nssv27247,nssv20512,nssv19715 M 31 0 6 Samples from several populations that are part of the HapMap project. "" NA10847,NA18860,NA18942,NA18975,NA19007,NA19221 nsv518921 15 27687810 27689622 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696382 S 2026 0 1 "" esv33098 15 27688623 27690198 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93137,essv95239,essv99090,essv96397 M 51 0 4 "" 21863,21872,21938,22371 nsv523728 15 27693153 27693511 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699544 S 2026 0 1 "" nsv832945 15 27719891 27911013 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451709 S 95 1 0 "" esv2422463 15 27790481 28002628 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161377 S 181 1 0 "" ND05461 nsv456739 15 27965906 28153539 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534030 S 1557 1 0 "" NINDS_129 nsv521157 15 28007716 28016505 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699090,nssv683163,nssv685638,nssv702778 M 2026 4 0 "" esv2751527 15 28033100 28393128 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6987497,essv6984122 M 771 1 0 "" BEC_779 esv33332 15 28070248 28073164 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv95670 S 51 0 1 "" 21841 dgv716e1 15 28080236 28805754 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv842,essv13607,essv19200,essv8229,essv15091,essv10734,essv22044,essv15867,essv12305,essv11877,essv24748,essv15746,essv22409,essv9017,essv17780,essv24257,essv13763,essv7417,essv20430,essv14461,essv16681,essv2602,essv13699,essv4279,essv14189,essv13164,essv10258,essv14525,essv24581,essv11130,essv9464,essv11708,essv20956,essv13042,essv12471,essv17670,essv5020,essv19969,essv21212,essv7748,essv21131,essv9995,essv14990,essv18332,essv23800,essv10818,essv16812,essv16239,essv894,essv5735,essv21319 M 271 0 0 "" NA10830,NA10831,NA10856,NA10860,NA10861,NA11830,NA11881,NA11992,NA11994,NA12154,NA12763,NA12801,NA12813,NA12815,NA12865,NA12878,NA18523,NA18542,NA18576,NA18593,NA18603,NA18623,NA18852,NA18870,NA18871,NA18872,NA18973,NA18990,NA19000,NA19099,NA19102,NA19116,NA19119,NA19127,NA19129,NA19131,NA19132,NA19138,NA19140,NA19142,NA19152,NA19153,NA19154,NA19161,NA19201,NA19202,NA19207,NA19208,NA19211,NA19221,NA19223 dgv717e1 15 28080236 28964768 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2162,esv816 M 271 0 0 "" NA18960 nsv832946 15 28106102 28294834 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451712,nssv1451711,nssv1451710,nssv1451714,nssv1451713 M 95 1 4 "" nsv9231 15 28122573 28124317 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21272 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA07029 nsv518720 15 28133522 28894118 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696171 S 2026 1 0 "" nsv9232 15 28172136 28877839 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22256,nssv25247,nssv22196,nssv23345,nssv23317,nssv27360,nssv27315,nssv27351,nssv22166,nssv25533,nssv23289,nssv23403,nssv23232,nssv27324,nssv23204,nssv23260,nssv22226,nssv27342,nssv19939,nssv23288,nssv23316,nssv27267,nssv27306,nssv25124,nssv25842,nssv25821,nssv25799,nssv19909,nssv22286,nssv27333,nssv22070,nssv27257,nssv21856,nssv19879 M 31 2 9 Samples from several populations that are part of the HapMap project. "" NA11830,NA12155,NA18502,NA18517,NA18552,NA18572,NA18853,NA18972,NA19007,NA19132,NA19221 nsv821679 15 28189706 28658691 CNV Gain Sebat_et_al_2004 15273396 ROMA Custom Nimblegen photoprint 85000 probe ROMA oligo array nssv1421308 S 31 1 0 "" nsv509563 15 28234186 28279698 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621007 S 4 1 0 "" NA15510 nsv442695 15 28235887 28289587 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv718e1 15 28255272 28805754 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv5195,essv23197,essv19681,essv7285,essv19107,essv22390,essv8427,essv1348,essv1955,essv5089 M 271 0 0 "" NA07055,NA12156,NA12264,NA12875,NA18516,NA18577,NA18592,NA18611,NA18959,NA19007 dgv719e1 15 28279020 28557286 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv10443,essv1014 M 271 0 0 "" NA18515,NA19005 nsv469713 15 28279021 28402108 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649734 M 265 1 41 Samples from several populations that are part of the HapMap project. "" nsv471679 15 28279022 28402108 CNV Loss Sharp et al 2005 15918152 BAC_aCGH,FISH Eichler Segmental Duplication BAC array nssv550174,nssv550176,nssv550175,nssv550172,nssv550170,nssv550173,nssv550171 M 48 0 7 "" JK1058,NA10495,NA10967,NA10969,NA15728,NA15732,P86GA nsv100 15 28289062 28290120 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv100 S 1 1 0 "" NA15510 nsv1475 15 28289062 28290120 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10928 S 9 1 0 "" NA15510 nsv102 15 28291928 28294309 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv102 S 1 1 0 "" NA15510 nsv103 15 28296937 28299029 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv103 S 1 1 0 "" NA15510 nsv104 15 28306501 28307890 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv104 S 1 1 0 "" NA15510 nsv105 15 28311629 28312757 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv105 S 1 1 0 "" NA15510 nsv106 15 28335392 28336861 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv106 S 1 1 0 "" NA15510 nsv832948 15 28366411 28585632 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451717,nssv1451716,nssv1451715,nssv1451719,nssv1451718 M 95 1 4 "" nsv107 15 28373452 28374377 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv107 S 1 1 0 "" NA15510 nsv1476 15 28373452 28374377 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10929 S 9 1 0 "" NA15510 nsv442696 15 28377089 28536721 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv108 15 28381408 28384132 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv108 S 1 1 0 "" NA15510 nsv433291 15 28388061 28450215 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463172 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA12878 nsv109 15 28389476 28390598 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv109 S 1 1 0 "" NA15510 nsv469586 15 28392844 28570676 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649700 M 265 0 6 Samples from several populations that are part of the HapMap project. "" dgv720e1 15 28393128 28964768 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv963,essv3493,essv8660,essv1321,essv993,essv3914 M 271 0 0 "" NA18960,NA18964,NA18973,NA18981,NA18999,NA19101 dgv108e55 15 28393128 30740356 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv2751529,esv2751528 M 771 2 0 "" BEC_519,BEC_560 nsv482176 15 28440735 28473156 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558537 S 1 1 0 "" KB1 nsv7262 15 28524207 30669954 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1245,nssv1244 M 9 0 0 "" NA19240 dgv721e1 15 28542436 28805754 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv16297,essv21239 M 271 0 0 "" NA11830,NA19161 dgv722e1 15 28605178 28939783 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2995,essv12198 M 271 0 0 "" NA18981,NA19101 nsv832949 15 28701787 28840095 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451722,nssv1451775,nssv1451733,nssv1451737,nssv1451774,nssv1451746,nssv1451744,nssv1451754,nssv1451745,nssv1451743,nssv1451730,nssv1451773,nssv1451742,nssv1451762,nssv1451727,nssv1451750,nssv1451729,nssv1451753,nssv1451747,nssv1451749,nssv1451751,nssv1451752,nssv1451748,nssv1451738,nssv1451732,nssv1451756,nssv1451757,nssv1451755,nssv1451731,nssv1451761,nssv1451758,nssv1451760,nssv1451759,nssv1451765,nssv1451736,nssv1451734,nssv1451764,nssv1451741,nssv1451726,nssv1451763,nssv1451735,nssv1451725,nssv1451768,nssv1451772,nssv1451767,nssv1451721,nssv1451771,nssv1451740,nssv1451766,nssv1451720,nssv1451770,nssv1451728,nssv1451723,nssv1451739,nssv1451769,nssv1451724 M 95 56 0 "" essv2950 15 28717792 28896272 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18972 esv32700 15 28719165 28758851 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv95714,essv95877 M 51 0 2 "" 21841,21911 nsv817677 15 28723577 28751864 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416098 S 112 0 1 "" NA12813 dgv304n27 15 28723577 28854497 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv456741,nsv456743,nsv456742 M 1557 3 0 "" 1782681235_A,HGDP00670,HGDP00752 nsv516317 15 28723577 28854497 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv681055,nssv684420,nssv667543,nssv675083,nssv678666,nssv656090,nssv689066,nssv691184,nssv662881 M 2026 4 5 "" nsv817678 15 28723577 28854497 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417684,nssv1417469,nssv1417569 M 112 0 3 "" NA18960,NA18972,NA18999 nsv456744 15 28723577 28910527 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534035 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01214 nsv525795 15 28723577 29111823 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701976 S 2026 1 0 "" nsv517819 15 28723577 30149996 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694168 S 2026 1 0 "" nsv442697 15 28738294 28768337 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv832950 15 28741917 28933756 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451795,nssv1451785,nssv1451784,nssv1451780,nssv1451802,nssv1451783,nssv1451782,nssv1451781,nssv1451786,nssv1451787,nssv1451793,nssv1451792,nssv1451790,nssv1451789,nssv1451791,nssv1451801,nssv1451796,nssv1451776,nssv1451794,nssv1451800,nssv1451797,nssv1451798,nssv1451799,nssv1451808,nssv1451803,nssv1451779,nssv1451807,nssv1451805,nssv1451806,nssv1451804,nssv1451778,nssv1451809,nssv1451788,nssv1451777 M 95 34 0 "" nsv1478 15 28748867 28782546 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7153 S 9 1 0 "" NA12156 nsv510392 15 28795097 28801097 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618409 S 4 0 1 "" CHM nsv832951 15 28918531 29091761 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451820,nssv1451812,nssv1451811,nssv1451810,nssv1451814,nssv1451818,nssv1451813,nssv1451815,nssv1451816,nssv1451817,nssv1451819 M 95 0 11 "" nsv521842 15 28927992 29059962 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694615 S 2026 1 0 "" esv33507 15 28970616 29258315 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93977,essv101312,essv93084,essv97369,essv100247 M 51 0 5 "" 21802,21805,21863,21879,22286 nsv832952 15 28991718 29121290 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451825,nssv1451822,nssv1451821,nssv1451824,nssv1451823 M 95 2 3 "" nsv520825 15 29143717 29172089 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv683991,nssv686352,nssv676004,nssv684068 M 2026 0 4 "" nsv456746 15 29144430 29172089 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534036 S 1557 0 1 "" 1780854419_A nsv1479 15 29241373 29274397 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2106 S 9 1 0 "" NA18555 nsv456747 15 29324788 29425288 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534037 S 1557 0 1 "" 1780862540_A nsv511044 15 29393838 29489905 OTHER Inversion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622413 S 4 0 0 "" NA10860 nsv516681 15 29403966 29462745 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv670118,nssv686976,nssv690628,nssv682017,nssv691185,nssv692188,nssv682825 M 2026 0 7 "" nsv456748 15 29408613 29484934 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534038 S 1557 0 1 "" NINDS_124 nsv469633 15 29518295 29691905 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649559 M 265 0 10 Samples from several populations that are part of the HapMap project. "" nsv9233 15 29536978 29540291 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20542 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18942 nsv9234 15 29545164 29553171 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25149 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18972 essv12200 15 29553592 29932359 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19101 dgv723e1 15 29553592 30773871 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv25119,esv562 M 271 0 0 "" NA10856 nsv817679 15 29574400 29582491 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417295 S 112 0 1 "" NA18608 dgv11e196 15 29596170 30162313 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array esv2422455,esv2422205,esv2422351,esv2422269 M 181 4 0 "" ND00727,ND01702,ND03587,ND04946 nsv9235 15 29653452 29659400 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23344 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA11830 nsv469569 15 29673292 29761692 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649682 M 265 0 3 Samples from several populations that are part of the HapMap project. "" dgv109e55 15 29684304 30298847 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv2751531,esv34816,esv34762,esv35123,esv2751530,esv2751532 M 771 6 0 "" BEC_394,BEC_491,NA10856,NA11830,NA12813,SPC_88 nsv9237 15 29703681 30233172 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23402,nssv25204 M 31 1 1 Samples from several populations that are part of the HapMap project. "" NA11830,NA18972 essv3058 15 29725770 29932359 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18981 dgv724e1 15 29725770 30375195 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv24224,essv21211,essv23734,essv19919,essv19074 M 271 0 0 "" NA10856,NA11830,NA12813 nsv832953 15 29764064 29887441 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451830,nssv1451838,nssv1451829,nssv1451828,nssv1451837,nssv1451834,nssv1451833,nssv1451835,nssv1451839,nssv1451832,nssv1451826,nssv1451836,nssv1451831,nssv1451827 M 95 14 0 "" esv33337 15 29769358 32654590 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101559,essv101473,essv98756,essv98892,essv98684,essv97480,essv97540,essv101202,essv101237,essv93955,essv93844,essv100742,essv100797,essv100904,essv96758,essv100947,essv101027,essv95223,essv95051,essv98294,essv94747,essv94808,essv94073,essv94002,essv101419,essv101396,essv94348,essv97065,essv97903,essv97863,essv95582,essv95479,essv95559,essv93142,essv93124,essv95301,essv97374,essv97420,essv101678,essv101673,essv95822,essv94546,essv94509,essv99004,essv99118,essv92858,essv92956,essv92966,essv92742,essv92820,essv93690,essv93759,essv96106,essv96109,essv96647,essv96636,essv97122,essv98552,essv98551,essv100033,essv99800,essv96008,essv93460,essv93555,essv93404,essv93263,essv93245,essv99674,essv99634,essv94903,essv95005,essv92659,essv92532,essv97984,essv98007,essv96531,essv96532,essv96422,essv99154,essv99258,essv97686,essv97712,essv100212,essv100236,essv100555,essv100451,essv100380,essv100311,essv99533,essv99462,essv99406,essv98475,essv96280,essv94284,essv94228 M 51 44 42 "" 21603,21606,21616,21618,21634,21656,21659,21693,21721,21772,21791,21802,21805,21808,21817,21837,21841,21847,21863,21872,21879,21909,21911,21932,21938,21939,21944,21972,22007,22011,22075,22085,22086,22127,22128,22170,22217,22231,22233,22259,22261,22275,22278,22286,22298,22300,22335,22352,22371,22394 nsv442367 15 29798781 30027160 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv305n27 15 29807211 30029658 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv456749,nsv456759 M 1557 2 0 "" HGDP01215,HGDP01412 dgv306n27 15 29807211 30231488 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv456758,nsv456754,nsv456752,nsv456760,nsv456753,nsv456750,nsv456757,nsv456756,nsv456755 M 1557 9 0 "" 1780862263_A,HGDP00148,HGDP00474,HGDP00564,HGDP00594,HGDP00976,NINDS_182,NINDS_31,NINDS_35 nsv817680 15 29807358 30302218 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416099 S 112 1 0 "" NA12813 nsv517740 15 29807358 30746003 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv679077,nssv677653,nssv665202,nssv677338,nssv656303,nssv674472,nssv658875,nssv693568,nssv686761,nssv685202,nssv678667,nssv672893,nssv656139,nssv663642,nssv691286,nssv661198,nssv651773,nssv681993,nssv683741,nssv666151,nssv688927,nssv678615,nssv683002,nssv675387,nssv690151,nssv666733,nssv657860,nssv693058,nssv672619,nssv684145,nssv664195,nssv681301,nssv683164,nssv651687,nssv659496,nssv687104,nssv672210,nssv666339,nssv656329,nssv683725,nssv654640,nssv663609,nssv653636,nssv657477,nssv682981,nssv689995,nssv676005,nssv701977,nssv673892,nssv658248,nssv677149,nssv692870,nssv657365,nssv654443,nssv677834,nssv681503,nssv689284,nssv691902,nssv683464,nssv652859,nssv664215,nssv692989,nssv687324,nssv654357,nssv671706,nssv662013,nssv683642,nssv690178,nssv652799,nssv673178,nssv655210,nssv659850,nssv665287,nssv656700,nssv671913,nssv653053,nssv652380,nssv677765,nssv673251,nssv689536,nssv657438,nssv670310,nssv666096,nssv685293,nssv686102,nssv677190,nssv657987,nssv652996,nssv668722,nssv685160,nssv663575,nssv674304,nssv676174,nssv662489,nssv665493,nssv689664,nssv661039,nssv681056,nssv677019,nssv671087,nssv680080,nssv662882,nssv688260,nssv674828,nssv700373 M 2026 55 50 "" dgv29n68 15 29837322 30053627 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH nsv832955,nsv832954 M 95 2 0 "" nsv469580 15 29841774 30041608 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649694 M 265 0 0 Samples from several populations that are part of the HapMap project. "" nsv821680 15 29868048 30180651 CNV Gain Sebat_et_al_2004 15273396 ROMA Custom Nimblegen photoprint 85000 probe ROMA oligo array nssv1421309 S 31 1 0 "" nsv1480 15 29933849 29954281 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5546 S 9 1 0 "" NA19129 dgv725e1 15 29981051 30184543 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv15892,essv4247,essv11678,essv17785,essv12449 M 271 0 0 "" NA10831,NA18603,NA19154,NA19207,NA19223 dgv307n27 15 29993724 30016646 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv456769,nsv456768,nsv456771,nsv456770,nsv456767 M 1557 5 0 "" HGDP00611,HGDP01247,HGDP01318,HGDP01319,HGDP01320 nsv469870 15 30001738 30191136 CNV Gain Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649891 M 265 2 0 Samples from several populations that are part of the HapMap project. "" nsv471680 15 30001739 30191136 CNV Gain+Loss Sharp et al 2005 15918152 BAC_aCGH,FISH Eichler Segmental Duplication BAC array nssv551114,nssv551113,nssv551112,nssv551111 M 48 3 1 "" JK1688,NA10494,NA10495,NA15729 nsv832956 15 30078908 30255818 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451842 S 95 1 0 "" dgv308n27 15 30160985 30231488 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv456777,nsv456776,nsv456778,nsv456772 M 1557 4 0 "" HGDP00562,HGDP00568,HGDP00575,HGDP00599 nsv471681 15 30179961 30412040 CNV Gain+Loss Sharp et al 2005 15918152 BAC_aCGH,FISH Eichler Segmental Duplication BAC array nssv550240,nssv549628,nssv549630,nssv550244,nssv549631,nssv549629,nssv550239,nssv550241,nssv549627,nssv550245,nssv550242,nssv550243 M 48 2 7 "" JK1058,JK1061,NA10495,NA10967,NA10969,NA11523,NA15728,NA15733,P86GA dgv726e1 15 30191187 30412040 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv23218,essv5225,essv5102 M 271 0 0 "" NA12156,NA18577,NA18611 dgv727e1 15 30191187 30609091 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1341,essv2583,essv21316,essv19199,essv10437,essv8436,essv7761,essv24746,essv19612,essv22414,essv12331,essv7426,essv14429,essv13809,essv17651,essv5047,essv19091,essv14977,essv6973,essv1948 M 271 0 0 "" NA07055,NA10860,NA10861,NA11881,NA12155,NA12865,NA12878,NA18515,NA18516,NA18542,NA18576,NA18582,NA18623,NA18870,NA18959,NA18990,NA19007,NA19138,NA19153,NA19201 dgv728e1 15 30191187 30773871 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv808,essv15869,essv24582,essv9474,essv19657,essv16643,essv22063,essv13139,essv10825,essv13684,essv13595,essv15753,essv14200,essv10783,essv4256,essv11888,essv11635,essv14547,essv20962,essv13060,essv10252,essv19930,essv20424,essv9065,essv8209,essv21143,essv18345,essv16805,essv23798,essv22382,essv9973,essv2186,essv12463,essv5729,essv17817 M 271 0 0 "" NA10830,NA10831,NA11992,NA11994,NA12154,NA12264,NA12763,NA12801,NA12813,NA12815,NA12875,NA18523,NA18593,NA18603,NA18852,NA18871,NA18872,NA18960,NA18973,NA19099,NA19102,NA19116,NA19119,NA19127,NA19131,NA19132,NA19140,NA19142,NA19152,NA19154,NA19202,NA19207,NA19208,NA19221,NA19223 nsv469726 15 30213186 30412040 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649747 M 265 0 20 Samples from several populations that are part of the HapMap project. "" nsv9238 15 30233172 30689372 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25863,nssv27378,nssv27387,nssv27426,nssv23458,nssv21886,nssv27435,nssv23487,nssv25579,nssv23430,nssv25272,nssv25884,nssv23515,nssv25556,nssv22376,nssv23431,nssv27369,nssv27444,nssv25229,nssv24484,nssv23459,nssv23514,nssv23486,nssv22316,nssv22346,nssv19969 M 31 4 8 Samples from several populations that are part of the HapMap project. "" NA11830,NA12155,NA18502,NA18517,NA18552,NA18572,NA18972,NA19007,NA19132,NA19221,NA19240 nsv821681 15 30257325 30589635 CNV Gain Sebat_et_al_2004 15273396 ROMA Custom Nimblegen photoprint 85000 probe ROMA oligo array nssv1421310 S 31 1 0 "" nsv442368 15 30291556 30299512 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv456779 15 30297802 30300525 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534063 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00778 dgv309n27 15 30297802 30302218 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv456781,nsv456780 M 1557 0 2 "" HGDP00467,HGDP00471 nsv817681 15 30297802 30302218 CNV Gain+Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417231,nssv1416875,nssv1416679,nssv1416678,nssv1417701,nssv1418213,nssv1417581,nssv1418170,nssv1416876,nssv1417644 M 112 8 2 "" NA06993,NA18576,NA18972,NA18992,NA18999,NA19119,NA19120,NA19143,NA19239,NA19240 nsv832957 15 30316092 30502594 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451845,nssv1451844,nssv1451843,nssv1451848,nssv1451846,nssv1451847,nssv1451853,nssv1451849,nssv1451850,nssv1451851,nssv1451852,nssv1451854 M 95 2 10 "" nsv433292 15 30344050 30455199 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463173 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA12878 nsv433433 15 30407419 30676740 CNV Gain Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463314 S 9 1 0 Samples from several populations that are part of the HapMap project. "" NA12156 essv16252 15 30407459 30609091 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19161 dgv729e1 15 30407459 30773871 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv21221,essv11125,essv24294 M 271 0 0 "" NA10856,NA11830,NA19211 nsv509564 15 30417983 30463156 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621008 S 4 1 0 "" NA15510 dgv30n68 15 30437684 30628015 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH nsv832959,nsv832960 M 95 5 5 "" nsv509565 15 30483895 30483895 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618110 S 4 1 0 "" CHM esv2422296 15 30586230 31008507 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161488 S 181 1 0 "" ND05461 nsv469587 15 30609232 30773871 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649701 M 265 0 5 Samples from several populations that are part of the HapMap project. "" nsv9239 15 30698639 30712694 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23542 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA11830 nsv456785 15 30713368 31140281 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534066 S 1557 1 0 "" NINDS_129 nsv1481 15 30715432 30721888 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7154 S 9 0 1 "" NA12156 nsv832961 15 30808469 30922280 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451865 S 95 1 0 "" nsv1482 15 30870458 30900936 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7155 S 9 0 1 "" NA12156 nsv832962 15 30898809 31027028 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451866 S 95 0 1 "" nsv521903 15 31077241 31088800 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694674 S 2026 0 1 "" nsv524708 15 31144554 31152626 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700691 S 2026 0 1 "" nsv832963 15 31302090 31499734 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451867 S 95 1 0 "" nsv518393 15 31351774 31364175 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695823 S 2026 1 0 "" nsv832964 15 31396063 31571310 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451869,nssv1451870,nssv1451871,nssv1451872,nssv1451873,nssv1451868 M 95 0 6 "" nsv523361 15 31675059 31677834 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699110 S 2026 0 1 "" nsv456788 15 31687997 31697114 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534068 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00768 nsv1483 15 31692256 31703546 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10044 S 9 0 1 "" NA18956 nsv442369 15 31693757 31696262 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv520848 15 31694920 31697114 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv681525,nssv676339 M 2026 0 2 "" nsv817682 15 31694920 31697114 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417542,nssv1417685 M 112 0 2 "" NA18971,NA18999 nsv524568 15 31780775 31784549 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700523 S 2026 0 1 "" nsv516051 15 31785680 31785766 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv665893,nssv676929 M 2026 2 0 "" nsv509566 15 31807273 31844609 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623672 S 4 1 0 "" NA18994 nsv1484 15 31808357 31825421 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4144,nssv5547 M 9 2 0 "" NA12878,NA19129 nsv456789 15 31821713 32213910 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534069 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01215 nsv520023 15 31858174 31858597 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697182 S 2026 0 1 "" nsv437798 15 31962628 31965008 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467679 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19100 nsv507771 15 31971861 31977861 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620576,nssv617895,nssv619137,nssv623181 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv94884 15 31987740 31987994 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv113462 M 24 "" nsv456790 15 32051310 32069025 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534070 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00328 dgv310n27 15 32063461 32065199 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv456792,nsv456791 M 1557 0 2 "" HGDP00039,HGDP00281 nsv516347 15 32063461 32065199 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv657861,nssv689552,nssv654952,nssv658282,nssv689788,nssv667724 M 2026 0 6 "" dgv730e1 15 32330313 32698469 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv12650,essv297,essv22418,essv6699,essv2792,essv15807,essv19644,essv12482,essv3890,essv4548,essv569,essv20792,essv7371,essv868,essv5561,essv6986,essv4280,essv24266,essv4828,essv8243,essv5915,essv4468,essv4886,essv4187,essv7786,essv14157,essv5151,essv24824,essv10110,essv5392,essv23480,essv8420,essv24406,essv3788,essv12322,essv24936,essv5249,essv18066,essv10241,essv22441,essv24039,essv20315,essv4367,essv6915,essv19676,essv13755,essv21310,essv13046,essv3744,essv9600,essv5056,essv17661,essv24535,essv7705,essv22491,essv22084,essv7275,essv10572,essv21385,essv2587,essv5126,essv14987,essv18404,essv18333,essv16794,essv17724,essv5710,essv21543,essv5183,essv22338,essv24571,essv1602,essv22400,essv19176,essv3728,essv22850,essv13668,essv22757,essv16458,essv11107,essv21223,essv16948,essv6821,essv1918,essv23240,essv17621,essv10008,essv3552,essv10835,essv17239,essv17461,essv11791,essv3209,essv23792,essv3277 M 271 0 0 "" NA06985,NA06994,NA07000,NA07019,NA07029,NA07034,NA10856,NA10859,NA10861,NA11830,NA11881,NA11882,NA11992,NA11994,NA12004,NA12043,NA12145,NA12146,NA12154,NA12155,NA12236,NA12249,NA12264,NA12707,NA12740,NA12753,NA12761,NA12763,NA12802,NA12865,NA12872,NA12873,NA12875,NA12878,NA18500,NA18503,NA18504,NA18516,NA18524,NA18526,NA18529,NA18540,NA18542,NA18550,NA18552,NA18561,NA18563,NA18564,NA18573,NA18576,NA18577,NA18579,NA18592,NA18593,NA18603,NA18605,NA18608,NA18611,NA18612,NA18623,NA18624,NA18633,NA18852,NA18870,NA18871,NA18872,NA18942,NA18943,NA18947,NA18959,NA18961,NA18965,NA18972,NA18974,NA18978,NA18987,NA18990,NA18994,NA18998,NA19000,NA19099,NA19116,NA19119,NA19130,NA19138,NA19139,NA19140,NA19141,NA19144,NA19152,NA19153,NA19207,NA19211,NA19223,NA19240 dgv731e1 15 32330313 32775539 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv10307,essv1901,essv8830,essv1505,essv20239,essv3070,essv10991,essv23681,essv7576,essv19229,essv20116,essv11850,essv9424,essv1224,essv1774,essv7155,essv6372,essv22576,essv1379,essv3123,essv16546,essv22637,essv7117,essv7305,essv15597,essv12572,essv4711,essv16104,essv433,essv23198,essv12273,essv12795,essv8302,essv23000,essv2679,essv13625,essv14710,essv6591,essv4159,essv15119,essv11712,essv18615,essv9178,essv21791,essv24141,essv7869,essv1147,essv22920,essv10375,essv23420,essv16674,essv14414,essv24811,essv6182,essv14327,essv18852,essv23382,essv8777,essv6286,essv20901,essv6386,essv9355,essv8911,esv870,essv13933,essv4639,essv23048,essv10700,essv13465,essv19942,essv24998,essv13020,essv14489,essv23886,essv20409,essv21072,essv15357,essv18112,essv16279,essv23566,essv17103,essv21997,essv18253,essv9025,essv8139,essv18706,essv13147,essv17928,essv1457,essv23135,essv232,essv5995,essv2090,essv20573,essv18982,essv17791,essv21422,essv5479,essv783,essv13526,essv18171,essv21838,essv19538,essv15736,essv2236,essv10466,essv17498,essv22190,essv15509,essv3976,essv22110 M 271 0 0 "" NA06991,NA06993,NA07056,NA07345,NA07348,NA07357,NA10830,NA10831,NA10838,NA10839,NA10846,NA10847,NA10854,NA10857,NA10860,NA10863,NA11839,NA11993,NA11995,NA12003,NA12005,NA12044,NA12057,NA12144,NA12156,NA12234,NA12239,NA12717,NA12750,NA12751,NA12752,NA12760,NA12762,NA12801,NA12812,NA12813,NA12814,NA12864,NA12874,NA12891,NA18505,NA18506,NA18508,NA18515,NA18532,NA18537,NA18545,NA18547,NA18555,NA18558,NA18570,NA18571,NA18572,NA18594,NA18609,NA18621,NA18622,NA18632,NA18636,NA18853,NA18854,NA18855,NA18859,NA18862,NA18944,NA18948,NA18949,NA18952,NA18956,NA18964,NA18966,NA18967,NA18969,NA18970,NA18976,NA18980,NA18981,NA18995,NA18997,NA19007,NA19092,NA19098,NA19100,NA19101,NA19102,NA19103,NA19120,NA19127,NA19128,NA19129,NA19131,NA19132,NA19137,NA19142,NA19143,NA19154,NA19159,NA19160,NA19161,NA19172,NA19192,NA19194,NA19200,NA19201,NA19202,NA19206,NA19208,NA19210,NA19221,NA19222 nsv471682 15 32347743 32669922 CNV Gain+Loss Sharp et al 2005 15918152 BAC_aCGH,FISH Eichler Segmental Duplication BAC array nssv550027,nssv550055,nssv550036,nssv550043,nssv550024,nssv550057,nssv550058,nssv550064,nssv550044,nssv550049,nssv550062,nssv550025,nssv550045,nssv550065,nssv550073,nssv550063,nssv550052,nssv550075,nssv550029,nssv550061,nssv550070,nssv550021,nssv550041,nssv550067,nssv550033,nssv550076,nssv550068,nssv550071,nssv550042,nssv550020,nssv550022,nssv550069,nssv550046,nssv550047,nssv550074,nssv550038,nssv550028,nssv550039,nssv550053,nssv550031,nssv550026,nssv550072,nssv550037,nssv550048,nssv550050,nssv550030,nssv550059,nssv550056,nssv550054,nssv550034,nssv550040,nssv550051,nssv550035,nssv550023,nssv550032,nssv550066,nssv550060 M 48 42 1 "" JK1058,JK1061,JK1688,JK776,NA10470,NA10471,NA10472,NA10473,NA10492,NA10493,NA10494,NA10495,NA10496,NA10967,NA10969,NA10970,NA10971,NA10976,NA10979,NA11323,NA11521,NA11523,NA11776,NA15724,NA15726,NA15727,NA15728,NA15729,NA15730,NA15731,NA15732,NA15733,NA16688,NA16689,NA17014,NA17015,NA17016,NA17017,NA17020,NA17052,NA17058,NA17059,P86GA nsv469547 15 32381849 32545099 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649657 M 265 0 9 Samples from several populations that are part of the HapMap project. "" dgv732e1 15 32385893 32602617 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv11987,essv2455,essv9859,essv12127,essv11481,essv9552,essv8887,essv13 M 271 0 0 "" NA18517,NA18856,NA18861,NA18945,NA18999,NA19144,NA19171,NA19173 nsv509567 15 32424524 32475548 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621009,nssv623673,nssv619667,nssv618111 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv1485 15 32433499 32681032 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10930,nssv9512,nssv5548,nssv6625,nssv1246 M 9 0 5 "" NA12156,NA15510,NA18507,NA19129,NA19240 nsv517751 15 32434860 32658588 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv689970,nssv682800,nssv659069,nssv664592,nssv678455,nssv666623,nssv667121,nssv662760,nssv666176,nssv660683,nssv656433,nssv656999,nssv674337,nssv670510,nssv692595,nssv683415,nssv687208,nssv667856,nssv669683,nssv666097,nssv675164,nssv675541,nssv675813,nssv655710,nssv672482,nssv667225,nssv669884,nssv668489,nssv656777,nssv651671,nssv672402,nssv654401,nssv652551,nssv683670,nssv657236,nssv671745,nssv682922,nssv689576,nssv681550,nssv657439,nssv654860,nssv657612,nssv683431,nssv654496,nssv669594,nssv656542,nssv682673,nssv687045,nssv670400,nssv670436,nssv674872,nssv658011,nssv680509,nssv673650,nssv676822,nssv679946,nssv666048,nssv654444,nssv654518,nssv678068,nssv664500,nssv690038,nssv673336,nssv681622,nssv684240,nssv664393,nssv664123,nssv662246,nssv681779,nssv659497,nssv693530,nssv661758,nssv657340,nssv655132,nssv656051,nssv680767,nssv657581,nssv686067,nssv661121,nssv655030,nssv671772,nssv655788,nssv693899,nssv686948,nssv667315,nssv670955,nssv677726,nssv676033,nssv671639,nssv688420,nssv677125,nssv659527,nssv660407,nssv676129,nssv693851,nssv683414,nssv692243,nssv689215,nssv665410,nssv692055,nssv693330,nssv656091,nssv679377,nssv689751,nssv665040,nssv675898,nssv670345,nssv689396,nssv664279,nssv676547,nssv684523,nssv691750,nssv684907,nssv682345,nssv669374,nssv674049,nssv662378,nssv665822,nssv668383,nssv673124,nssv679895,nssv681713,nssv652713,nssv690996,nssv668423,nssv675165,nssv679754,nssv659982,nssv682624,nssv691846,nssv656161,nssv673476,nssv679947,nssv686776,nssv685368,nssv683887,nssv652894,nssv682517,nssv671415,nssv651701,nssv660225,nssv679376,nssv684970,nssv678471,nssv679694,nssv660955,nssv704736,nssv653242,nssv660270,nssv685454,nssv652306,nssv659895,nssv658045,nssv660865,nssv677020,nssv691647,nssv664756,nssv651719,nssv670332,nssv675306,nssv658378,nssv672674,nssv662640,nssv669927,nssv680287,nssv669797,nssv653918,nssv689417,nssv676376,nssv689452,nssv680188,nssv653138,nssv671516,nssv662465,nssv664333,nssv691648,nssv654255,nssv690912,nssv669426,nssv681735,nssv661186,nssv661675,nssv687864,nssv653518,nssv662811,nssv670533,nssv665747,nssv680481,nssv668786,nssv676107,nssv656330,nssv651718,nssv695534,nssv674717,nssv686551,nssv692536,nssv660122,nssv677191,nssv661790,nssv689729,nssv682225,nssv652860,nssv691735,nssv684313,nssv675211,nssv659937,nssv670268,nssv684800,nssv680142,nssv689537,nssv675055,nssv672072,nssv693227,nssv679537,nssv678188,nssv657440,nssv663211,nssv683586,nssv654621,nssv665666,nssv677572,nssv661225,nssv655523,nssv682553,nssv666417,nssv680740,nssv678004,nssv672131,nssv677385,nssv693404,nssv685264,nssv663185,nssv659869,nssv679971,nssv695637,nssv681462,nssv673560,nssv671931,nssv688653,nssv660716,nssv674305,nssv663356,nssv687840,nssv680814,nssv691293,nssv659241,nssv660486,nssv671488,nssv673201,nssv671187,nssv683465,nssv679152,nssv658538,nssv673064,nssv667063,nssv686380,nssv661103,nssv680535,nssv690831,nssv688994,nssv662679,nssv678239,nssv678214,nssv680426,nssv692292,nssv693492,nssv681481,nssv680210,nssv685265,nssv671345,nssv681373,nssv664428,nssv686530,nssv678507,nssv666943,nssv704410,nssv665864,nssv651698,nssv678567,nssv664976,nssv686992,nssv670387,nssv653857,nssv666451,nssv690937,nssv688549,nssv693032,nssv697874,nssv679355,nssv664380,nssv662556,nssv681331,nssv654239,nssv654803,nssv690814,nssv664196,nssv692798,nssv684883,nssv657839,nssv675632,nssv654568,nssv655096,nssv653502,nssv691623,nssv670136,nssv667496,nssv665262,nssv653674,nssv693283,nssv689356,nssv661407,nssv666340,nssv675959,nssv653673,nssv653662,nssv656471,nssv682982,nssv691723,nssv656394,nssv652927,nssv664352,nssv690395,nssv678940,nssv670450,nssv664122,nssv654002,nssv655301,nssv691374,nssv670162,nssv677360,nssv666818,nssv692489,nssv659589,nssv667745,nssv675761,nssv665581,nssv692511,nssv669402,nssv669745,nssv652094,nssv685727,nssv671018,nssv662041,nssv680343,nssv652142,nssv686219,nssv672371,nssv680109,nssv657094,nssv679354,nssv662732,nssv675488,nssv655113,nssv685483,nssv677983,nssv661833,nssv660243,nssv655770,nssv664729,nssv691713,nssv667062,nssv692293,nssv684921,nssv678506 M 2026 26 338 "" dgv733e1 15 32447708 32686160 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv19303,essv5661,essv18574,essv2423 M 271 0 0 "" NA07022,NA10851,NA18526,NA18951 nsv9240 15 32447734 32456484 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22465 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18980 nsv482177 15 32458564 32487180 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558538 S 1 1 0 "" KB1 nsv9241 15 32460923 32664534 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21546,nssv22466,nssv19660,nssv23590,nssv25254,nssv22294,nssv22515,nssv22525,nssv23478,nssv23562,nssv27452,nssv22863,nssv19805,nssv24363,nssv25625,nssv22158,nssv20572,nssv21302,nssv19690,nssv25926,nssv19720,nssv26120,nssv23506,nssv25304,nssv19999,nssv19775,nssv21976,nssv21946,nssv25602,nssv23543,nssv23534,nssv20201,nssv25322,nssv21916,nssv22495,nssv24510,nssv22130,nssv25279,nssv22406,nssv25905,nssv25329,nssv22892,nssv23598,nssv22277,nssv23570,nssv25297,nssv19835,nssv24337,nssv26101 M 31 26 1 Samples from several populations that are part of the HapMap project. "" NA07029,NA10839,NA10847,NA10863,NA11830,NA12155,NA12740,NA12802,NA12872,NA18502,NA18504,NA18517,NA18537,NA18552,NA18563,NA18564,NA18572,NA18853,NA18860,NA18942,NA18972,NA18980,NA19007,NA19132,NA19144,NA19221,NA19240 nsv110 15 32472522 32628056 CNV Loss Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv110 S 1 0 1 "" NA15510 nsv821682 15 32481879 32652370 CNV Loss Sebat_et_al_2004 15273396 ROMA Custom Nimblegen photoprint 85000 probe ROMA oligo array nssv1421311,nssv1421314,nssv1421312 M 31 0 3 "" nsv442698 15 32487975 32617680 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv94645 15 32489310 32494555 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv113223 M 24 "" dgv734e1 15 32496798 32698469 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv18694,essv8414,essv92,essv6745,essv11367,essv2926,essv6451,essv12049,essv9950,essv24099,essv7898,essv23634,essv5824,essv13503,essv17679,essv711,essv20527,essv1691,essv15912,essv25077,essv22014,essv1049,essv20154,essv9565,essv3912 M 271 0 0 "" NA07048,NA07055,NA10835,NA11832,NA12056,NA12716,NA12815,NA12892,NA18501,NA18562,NA18566,NA18592,NA18858,NA18914,NA18940,NA18960,NA18968,NA18975,NA19005,NA19007,NA19093,NA19204,NA19205,NA19238,NA19239 dgv735e1 15 32496798 32775539 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv19406,essv23613,essv373 M 271 0 0 "" NA11840,NA12006,NA18971 dgv736e1 15 32498326 32602617 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv12902,essv7679,essv12937,essv7925,essv18817,essv11319,essv8529,essv7258,essv6456,essv14685,essv16582,essv4216,essv14232,essv8692,essv24540,essv3843,essv3428,essv12867,essv7948,essv20829 M 271 0 0 "" NA10855,NA11831,NA12248,NA18502,NA18522,NA18523,NA18609,NA18620,NA18635,NA18637,NA18860,NA18863,NA18912,NA18913,NA18953,NA18956,NA19094,NA19145,NA19203,NA19209 dgv21n64 15 32505886 32587887 CNV Gain+Loss Wang_et_al_2007 17921354 SNP_array nsv817683,nsv817685 M 112 4 18 "" NA10835,NA10851,NA10863,NA12056,NA12248,NA12264,NA12878,NA12892,NA18609,NA18856,NA18951,NA18953,NA18960,NA18968,NA19093,NA19094,NA19144,NA19145,NA19171,NA19173,NA19238,NA19239 dgv311n27 15 32505886 32587887 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv456847,nsv456855,nsv456922,nsv456843,nsv456902,nsv456858,nsv456923,nsv456882,nsv456827,nsv456867,nsv456833,nsv456832,nsv456831,nsv456856,nsv456838,nsv456839,nsv456887,nsv456842,nsv456910,nsv456869,nsv456840,nsv456824,nsv456849,nsv456876 M 1557 24 0 "" 1780854518_A,1798860047_A,1798860072_A,HGDP00005,HGDP00118,HGDP00279,HGDP00302,HGDP00307,HGDP00450,HGDP00462,HGDP00463,HGDP00469,HGDP00470,HGDP00568,HGDP00582,HGDP00708,HGDP00732,HGDP00791,HGDP00977,HGDP01096,HGDP01195,HGDP01340,NINDS_10,NINDS_84 dgv312n27 15 32505886 32587887 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv456866,nsv456851,nsv456798,nsv456828,nsv456925,nsv456893,nsv456888,nsv456859,nsv456801,nsv456804,nsv456873,nsv456814,nsv456835,nsv456826,nsv456868,nsv456896,nsv456807,nsv456881,nsv456913,nsv456903,nsv456810,nsv456911,nsv456809,nsv456805,nsv456845,nsv456891,nsv456860,nsv456920,nsv456857,nsv456872,nsv456821,nsv456870,nsv456837,nsv456890,nsv456906,nsv456803,nsv456854,nsv456818,nsv456878,nsv456884,nsv456916,nsv456894,nsv456822,nsv456895,nsv456815,nsv456921,nsv456875,nsv456794,nsv456825,nsv456905,nsv456811,nsv456850,nsv456813,nsv456904,nsv456816,nsv456806,nsv456918,nsv456917,nsv456871,nsv456834,nsv456880,nsv456846,nsv456899,nsv456864,nsv456800,nsv456907,nsv456877,nsv456844,nsv456915,nsv456802,nsv456914,nsv456836,nsv456924,nsv456848,nsv456796,nsv456817,nsv456793,nsv456909,nsv456901,nsv456898,nsv456892,nsv456862,nsv456900,nsv456829,nsv456853,nsv456823,nsv456883,nsv456912,nsv456812,nsv456820,nsv456799,nsv456865,nsv456879,nsv456795,nsv456861,nsv456889 M 1557 0 96 "" 1780854117_A,1780854118_A,1780854128_A,1780854185_A,1780854294_A,1780854299_A,1780854341_A,1780854557_A,1780862094_A,1780862301_A,1780862309_A,1780862310_A,1780862435_A,1780862461_A,1780862521_A,1782681076_A,1782681091_A,1782681110_A,1782681208_A,1782681296_A,1787431198_A,1798860049_A,1798860210_A,1798860251_A,1798860277_A,1798860371_A,HGDP00099,HGDP00116,HGDP00133,HGDP00136,HGDP00151,HGDP00177,HGDP00251,HGDP00258,HGDP00267,HGDP00315,HGDP00376,HGDP00397,HGDP00433,HGDP00515,HGDP00524,HGDP00541,HGDP00545,HGDP00550,HGDP00580,HGDP00635,HGDP00643,HGDP00674,HGDP00679,HGDP00693,HGDP00734,HGDP00756,HGDP00796,HGDP00797,HGDP00868,HGDP00881,HGDP00903,HGDP00906,HGDP00910,HGDP00931,HGDP00941,HGDP01064,HGDP01073,HGDP01097,HGDP01166,HGDP01167,HGDP01171,HGDP01187,HGDP01200,HGDP01201,HGDP01253,HGDP01257,HGDP01312,HGDP01334,HGDP01363,HGDP01386,HGDP01405,HGDP01412,HGDP01418,NINDS_109,NINDS_111,NINDS_129,NINDS_134,NINDS_147,NINDS_160,NINDS_200,NINDS_201,NINDS_227,NINDS_23,NINDS_230,NINDS_234,NINDS_256,NINDS_44,NINDS_57,NINDS_59,NINDS_6 dgv313n27 15 32505886 32658588 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv456949,nsv457048,nsv456960,nsv457024,nsv456947,nsv456937,nsv457015,nsv456976,nsv457012,nsv456986,nsv457033,nsv456950,nsv457064,nsv457042,nsv457017,nsv456982,nsv456940,nsv457054,nsv456929,nsv456978,nsv457061,nsv457003,nsv457032,nsv456939,nsv456968,nsv456962,nsv456971,nsv456927,nsv457035,nsv457034,nsv456988,nsv457056,nsv457060,nsv456967,nsv457036,nsv456934,nsv457050,nsv457038,nsv456961,nsv457021,nsv456991,nsv457031,nsv457046,nsv456983,nsv456979,nsv457062,nsv456938,nsv456933,nsv457027,nsv457051,nsv456970,nsv456981,nsv456955,nsv457067,nsv456990,nsv457001,nsv456932,nsv457022,nsv457059,nsv456987,nsv457044,nsv456926,nsv456951,nsv456995,nsv457029,nsv457007,nsv456989,nsv456964,nsv457040,nsv457058,nsv457039,nsv457005,nsv457020,nsv456931,nsv456966,nsv457069,nsv457014,nsv457028,nsv456935,nsv457013,nsv456945,nsv456954,nsv456959,nsv456956,nsv456998,nsv457045,nsv457006,nsv457002,nsv457047,nsv456942,nsv456936,nsv456984,nsv456994,nsv456972,nsv456948,nsv457057,nsv456977,nsv457065,nsv456973,nsv457043,nsv457016,nsv456943,nsv457000,nsv457023,nsv456958,nsv457009,nsv456957,nsv456975,nsv457070,nsv456980,nsv457053,nsv456944,nsv456928,nsv456993,nsv456953,nsv457055,nsv457004 M 1557 0 117 "" 1780846030_A,1780854023_A,1780854238_A,1780854264_A,1780854318_A,1780854327_A,1780854334_A,1780854463_A,1780854537_A,1780862084_A,1780862085_A,1780862126_A,1780862197_A,1780862227_A,1780862304_A,1780862355_A,1780862378_A,1780862415_A,1780862424_A,1780862437_A,1780862448_A,1780862460_A,1780862470_A,1780862539_A,1780862547_A,1780862577_A,1780862578_A,1780862584_A,1780862585_A,1782681080_A,1782681111_A,1782681142_A,1782681275_A,1782681378_A,1782681495_A,1788485589_A,1798860491_A,1798860565_A,HGDP00035,HGDP00070,HGDP00100,HGDP00131,HGDP00135,HGDP00146,HGDP00148,HGDP00181,HGDP00183,HGDP00189,HGDP00191,HGDP00210,HGDP00226,HGDP00298,HGDP00412,HGDP00417,HGDP00438,HGDP00455,HGDP00491,HGDP00540,HGDP00544,HGDP00547,HGDP00552,HGDP00554,HGDP00556,HGDP00579,HGDP00601,HGDP00613,HGDP00630,HGDP00669,HGDP00670,HGDP00682,HGDP00686,HGDP00701,HGDP00772,HGDP00778,HGDP00794,HGDP00814,HGDP00870,HGDP00877,HGDP00975,HGDP01009,HGDP01027,HGDP01029,HGDP01059,HGDP01081,HGDP01153,HGDP01184,HGDP01202,HGDP01221,HGDP01237,HGDP01245,HGDP01254,HGDP01275,HGDP01283,HGDP01290,HGDP01300,HGDP01318,HGDP01338,HGDP01348,HGDP01350,HGDP01376,HGDP01377,HGDP01403,HGDP01408,NINDS_110,NINDS_114,NINDS_116,NINDS_181,NINDS_199,NINDS_217,NINDS_226,NINDS_243,NINDS_245,NINDS_247,NINDS_29,NINDS_60,NINDS_80,NINDS_85 dgv314n27 15 32505886 32658588 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv456946,nsv457068,nsv456999,nsv457010,nsv457026,nsv457066,nsv456969,nsv456965,nsv457049,nsv457011,nsv457018,nsv457037,nsv456992,nsv457025 M 1557 14 0 "" 1780854039_A,1780854129_A,1780862108_A,1780862452_A,1788485588_A,1798860443_A,HGDP00461,HGDP00706,HGDP00799,HGDP01303,HGDP01375,NINDS_202,NINDS_209,NINDS_45 nsv438269 15 32509102 32596273 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470661,nssv470664,nssv470662 M 269 0 3 Samples from several populations that are part of the HapMap project. "" NA18500,NA18521,NA19144 nsv469685 15 32518463 32669922 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649616 M 265 0 5 Samples from several populations that are part of the HapMap project. "" nsv433434 15 32529325 32599965 CNV Gain Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463315 S 9 1 0 Samples from several populations that are part of the HapMap project. "" NA18956 dgv315n27 15 32530025 32587887 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv457075,nsv457077,nsv457083,nsv457076,nsv457080,nsv457081,nsv457079,nsv457073,nsv457078,nsv457082,nsv457072,nsv457071 M 1557 0 12 "" 1780854568_A,1780854573_A,1780862077_A,1798860292_A,HGDP00103,HGDP00127,HGDP00600,HGDP00768,HGDP00879,HGDP01373,HGDP01411,NINDS_163 dgv737e1 15 32534734 32602617 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv9498,essv3660,essv13273,essv7440,essv13341 M 271 0 0 "" NA18500,NA18521,NA18582,NA18991,NA19201 essv985 15 32534734 32660555 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18964 esv2751533 15 32564059 32772283 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6989873,essv6983884 M 771 0 1 "" BEC_728 nsv510658 15 32621769 32644085 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620082 S 4 0 1 "" NA15510 nsv832965 15 32623288 32788452 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451874 S 95 0 1 "" nsv832966 15 32643024 32698469 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451876,nssv1451875,nssv1451879,nssv1451877,nssv1451878 M 95 0 5 "" essv14657 15 32688453 32729249 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19145 dgv316n27 15 32715940 32769676 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv457087,nsv457089,nsv457090,nsv457099,nsv457088,nsv457091 M 1557 0 6 "" 1780862528_A,1782681080_A,HGDP01166,NINDS_57,NINDS_67,NINDS_85 dgv110e55 15 32716663 32772283 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv2751534,esv2751535 M 771 0 2 "" BEC_303,BEC_95 nsv517692 15 32717247 32769676 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv652861,nssv671188,nssv675489,nssv676807,nssv664280,nssv688421,nssv683466,nssv660244,nssv664472,nssv689418,nssv664593 M 2026 0 11 "" nsv522411 15 32741278 33250273 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695193 S 2026 1 0 "" nsv457105 15 32741576 32769236 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534371 S 1557 0 1 "" 1780854573_A esv33910 15 32775194 32778261 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99473 S 51 0 1 "" 22335 nsv524072 15 32775206 32775283 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699940 S 2026 0 1 "" nsv457106 15 32837079 33014905 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534372 S 1557 1 0 "" 1780862252_A nsv832967 15 32897394 33055198 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451880 S 95 0 1 "" nsv507772 15 32980950 32986950 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617896,nssv620577,nssv623182,nssv619138 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv94632 15 33255154 33255222 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv113210 M 24 "" nsv1486 15 33281540 33323841 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6626 S 9 0 1 "" NA12156 nsv1487 15 33308082 33337837 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5549 S 9 1 0 "" NA19129 nsv832968 15 33428677 33577913 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451881 S 95 0 1 "" nsv507773 15 33433636 33439636 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623183 S 4 1 0 "" NA18994 nsv1489 15 33440097 33475033 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1247 S 9 1 0 "" NA19240 nsv1490 15 33801517 33834855 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7156 S 9 0 1 "" NA12156 nsv457109 15 33808912 34101257 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534375 S 1557 1 0 "" 1780854279_A nsv832970 15 33837409 34058631 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451882 S 95 1 0 "" nsv1491 15 33862795 33897960 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1248 S 9 1 0 "" NA19240 nsv94804 15 33947423 33949507 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv113382 M 24 "" nsv521741 15 34007269 34007327 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694505 S 2026 1 0 "" nsv510393 15 34060994 34066994 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624167 S 4 0 1 "" NA18994 nsv94748 15 34212064 34212064 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv113326 M 24 "" nsv1492 15 34256590 34301933 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6627 S 9 0 1 "" NA12156 nsv832971 15 34377739 34564894 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451896,nssv1451900,nssv1451893,nssv1451895,nssv1451890,nssv1451897,nssv1451899,nssv1451892,nssv1451891,nssv1451898,nssv1451894,nssv1451887,nssv1451888,nssv1451905,nssv1451904,nssv1451901,nssv1451889,nssv1451903,nssv1451906,nssv1451902,nssv1451884,nssv1451886,nssv1451883,nssv1451885 M 95 24 0 "" nsv817686 15 34484794 34492792 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416973 S 112 0 1 "" NA19137 nsv817687 15 34488568 34490537 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416497,nssv1418218 M 112 0 2 "" NA18517,NA19143 nsv516585 15 34488804 34490537 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv687260,nssv669375,nssv672947,nssv689752,nssv675463 M 2026 0 5 "" nsv522598 15 34488804 34492792 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705988 S 2026 0 1 "" nsv1493 15 34496886 34529345 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2107 S 9 1 0 "" NA18555 nsv1494 15 34530165 34540188 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5550 S 9 1 0 "" NA19129 nsv1495 15 34555657 34588347 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6628 S 9 1 0 "" NA12156 nsv518788 15 34616006 34625472 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696241 S 2026 0 1 "" nsv94945 15 34741934 34741985 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv113523 M 24 "" nsv518513 15 35053039 35063531 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695953 S 2026 0 1 "" nsv1496 15 35092469 35136959 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4145 S 9 0 1 "" NA12878 nsv523457 15 35278063 35282033 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699215 S 2026 0 1 "" nsv522831 15 35330852 35334040 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698481 S 2026 0 1 "" nsv528887 15 35330852 35348081 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705570 S 2026 0 1 "" nsv457114 15 35338364 35354053 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534376 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00929 nsv522748 15 35338549 35348081 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698383 S 2026 1 0 "" nsv832972 15 35366288 35529453 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451907 S 95 0 1 "" dgv738e1 15 35618861 35759779 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv273,essv23955 M 271 0 0 "" NA12814 nsv527145 15 35634924 35636600 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703534 S 2026 0 1 "" nsv507774 15 35638885 35644885 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619139,nssv620578 M 4 2 0 "" NA10860,NA15510 nsv9242 15 35704626 35707856 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19780 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA12802 nsv817688 15 35976099 35982047 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416498,nssv1416499 M 112 0 2 "" NA18515,NA18517 nsv1497 15 36192336 36201666 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4146 S 9 1 0 "" NA12878 nsv832973 15 36231097 36432174 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451908 S 95 1 0 "" nsv832974 15 36285898 36477877 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451909 S 95 0 1 "" nsv525338 15 36314242 36314912 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701456 S 2026 0 1 "" nsv94413 15 36372612 36379191 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv112991 M 24 "" nsv510394 15 36387346 36393346 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618410,nssv624168,nssv622253,nssv621421 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv1498 15 36442339 36476004 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2930 S 9 1 0 "" NA18555 nsv523391 15 36451059 36476363 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699141 S 2026 0 1 "" nsv1500 15 36506090 36551151 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7158 S 9 0 1 "" NA12156 nsv525770 15 36604125 36872248 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701940 S 2026 1 0 "" nsv832975 15 36799207 37014882 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451910 S 95 0 1 "" nsv457115 15 36834091 36869009 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534377 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00540 nsv457116 15 36835523 36885641 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534378 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00543 nsv507775 15 36849807 36855807 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620579 S 4 1 0 "" NA15510 nsv510659 15 36859327 36935883 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618925 S 4 0 1 "" NA10860 dgv145n21 15 37001150 37008312 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv521542,nsv521431 M 2026 0 2 "" nsv522134 15 37050264 37235979 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694908 S 2026 1 0 "" nsv510395 15 37095844 37101844 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624169,nssv621422 M 4 0 2 "" NA15510,NA18994 nsv832976 15 37216584 37259623 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451911,nssv1451912 M 95 2 0 "" nsv526483 15 37230833 37251791 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702792 S 2026 0 1 "" nsv94777 15 37307395 37307734 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv113355 M 24 "" nsv442699 15 37375518 37379480 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv1501 15 37576510 37598755 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9513 S 9 1 0 "" NA18507 nsv832977 15 37604804 37768812 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451913 S 95 1 0 "" nsv507776 15 37610393 37616393 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623184,nssv620580,nssv617897,nssv619140 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv1502 15 37671606 37716260 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7159 S 9 0 1 "" NA12156 nsv832978 15 37687051 37882173 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451914,nssv1451916,nssv1451915 M 95 3 0 "" nsv832979 15 37829220 38005699 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451917,nssv1451919,nssv1451918,nssv1451920 M 95 1 3 "" nsv832983 15 37886058 38036131 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451921 S 95 1 0 "" nsv94402 15 38011319 38011319 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv112980 M 24 "" nsv1503 15 38061896 38094380 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10045 S 9 1 0 "" NA18956 nsv516913 15 38066873 38067985 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv682433,nssv654930,nssv658750 M 2026 0 3 "" nsv94672 15 38215797 38215849 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv113250 M 24 "" nsv510660 15 38340198 38509175 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620083 S 4 0 1 "" NA15510 nsv517541 15 38344560 38382919 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv668844,nssv660429,nssv678807,nssv692537,nssv669798,nssv685331,nssv671568,nssv692799,nssv656052,nssv652307,nssv667247,nssv688330,nssv677810 M 2026 0 13 "" nsv457118 15 38352997 38393776 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534379 S 1557 0 1 "" NINDS_70 nsv832984 15 38581683 38785827 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451922,nssv1451923 M 95 0 2 "" dgv739e1 15 38619837 38782403 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2504,esv256 M 271 0 0 "" NA19003 nsv507777 15 38637192 38643192 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619143,nssv623185,nssv620581 M 4 3 0 "" NA10860,NA15510,NA18994 nsv7263 15 38682751 38703561 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4147,nssv6629 M 9 0 0 "" NA12156,NA12878 nsv529030 15 38743763 38799987 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705741 S 2026 0 1 "" nsv527234 15 38775017 38818978 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703634 S 2026 0 1 "" nsv1504 15 39015841 39048864 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4148 S 9 1 0 "" NA12878 nsv507778 15 39348739 39354739 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619144 S 4 1 0 "" NA10860 nsv524476 15 39476524 39607492 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700414 S 2026 0 1 "" nsv1505 15 39531233 39562300 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10046 S 9 1 0 "" NA18956 esv33378 15 39573797 39593052 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99930 S 51 1 0 "" 22086 nsv94393 15 39805028 39805359 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv112971 M 24 "" dgv740e1 15 39834465 39909909 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv5698,esv913 M 271 0 0 "" NA18550 nsv517631 15 39884218 39974784 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv686868,nssv677235,nssv672157,nssv682320,nssv690496,nssv652598,nssv659851,nssv679020 M 2026 0 8 "" nsv9243 15 39888917 39891282 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23626,nssv22324,nssv21594,nssv20231 M 31 4 0 Samples from several populations that are part of the HapMap project. "" NA10839,NA11830,NA12872,NA18975 nsv9244 15 39898004 39996097 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27460 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19221 nsv1506 15 39904223 39936663 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6630 S 9 1 0 "" NA12156 nsv519577 15 40007252 40007368 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696930 S 2026 0 1 "" nsv523658 15 40119908 40120317 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699459 S 2026 1 0 "" nsv526982 15 40120076 40120317 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703355 S 2026 0 1 "" nsv517183 15 40120195 40120317 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv653951,nssv656566 M 2026 0 2 "" nsv471683 15 40121667 40290274 CNV Gain+Loss Sharp et al 2005 15918152 BAC_aCGH,FISH Eichler Segmental Duplication BAC array nssv549633,nssv549632 M 48 1 1 "" NA10493,NA15729 nsv832985 15 40158774 40352258 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451925,nssv1451924 M 95 0 2 "" nsv457121 15 40183574 40205377 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534381 S 1557 0 1 "" NINDS_272 nsv442370 15 40191008 40194976 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv442371 15 40208707 40221098 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv817689 15 40210382 40218434 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417420 S 112 0 1 "" NA18952 nsv9245 15 40229141 40240864 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27468 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19221 nsv1507 15 40253835 40285751 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5551 S 9 1 0 "" NA19129 nsv832986 15 40375117 40540956 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451926 S 95 0 1 "" nsv832987 15 40414739 40579640 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451927 S 95 1 0 "" nsv528725 15 40542847 40891698 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705380 S 2026 1 0 "" nsv1508 15 40544143 40578158 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4149 S 9 1 0 "" NA12878 nsv1509 15 40658765 40691872 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7160 S 9 1 0 "" NA12156 nsv457122 15 40736154 40849840 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534382 S 1557 0 1 "" 1780854065_A nsv517553 15 40758191 40810774 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv663669,nssv678472,nssv697941,nssv692747,nssv684349,nssv652340 M 2026 1 5 "" nsv525461 15 40849840 41269419 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701589 S 2026 0 1 "" nsv94744 15 40895355 40895544 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv113322 M 24 "" nsv515876 15 40904198 41232597 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705714,nssv705701,nssv669551,nssv682487,nssv665118,nssv695338,nssv705373,nssv662075 M 2026 6 2 "" nsv1511 15 41101131 41133066 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10047 S 9 1 0 "" NA18956 nsv94791 15 41241937 41246047 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv113369 M 24 "" nsv1512 15 41404126 41448938 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7161 S 9 0 1 "" NA12156 nsv1513 15 41441660 41476006 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2931 S 9 1 0 "" NA18555 nsv94676 15 41562269 41565066 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv113254 M 24 "" nsv437799 15 41571292 41776810 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467680 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19240 nsv515877 15 41589316 41605344 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv665119,nssv673893 M 2026 0 2 "" nsv518707 15 41589316 41613849 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696158 S 2026 0 1 "" nsv832988 15 41591933 41764154 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451928 S 95 0 1 "" dgv741e1 15 41610450 41840909 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv10531,essv20521,essv23977,essv13561,essv378 M 271 0 0 "" NA12716,NA18971,NA19160,NA19240 dgv742e1 15 41610450 41935933 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv641,essv16240,essv1157 M 271 0 0 "" NA18964,NA19161 nsv524910 15 41623770 41726934 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700922 S 2026 0 1 "" nsv509569 15 41631762 41701149 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623674 S 4 1 0 "" NA18994 nsv9246 15 41641893 41644495 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24389 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18504 nsv1514 15 41646552 41783872 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10048,nssv9307,nssv4151 M 9 0 3 "" NA12878,NA18517,NA18956 nsv9248 15 41649486 41652110 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24536 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19240 nsv9249 15 41674664 41680301 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25977,nssv22545 M 31 1 1 Samples from several populations that are part of the HapMap project. "" NA18502,NA18537 esv33424 15 41676247 41782515 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv94893,essv96474 M 51 0 2 "" 22231,22261 dgv743e1 15 41676268 41845926 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv12070,essv11065,essv7981,essv13953 M 271 0 0 "" NA19138,NA19160,NA19238,NA19240 nsv442372 15 41680133 41682098 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv9250 15 41680301 41683739 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24562 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19240 nsv433293 15 41682935 41726934 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463174 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA19240 nsv9251 15 41698259 41740212 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24648 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19240 dgv146n21 15 41701665 41726934 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv523204,nsv521299 M 2026 0 2 "" nsv817690 15 41701665 41726934 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416974,nssv1416880,nssv1416879 M 112 0 3 "" NA19138,NA19238,NA19240 nsv9252 15 41741444 41744046 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24415 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18504 nsv9253 15 41749051 41753660 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24674 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19240 nsv9254 15 41775441 41777402 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22575,nssv21332,nssv25648 M 31 2 1 Samples from several populations that are part of the HapMap project. "" NA07029,NA18537,NA19132 esv33661 15 41803811 41851712 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99919 S 51 0 1 "" 22086 nsv9255 15 41923444 41928918 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21813,nssv23571 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA07048,NA12155 nsv1515 15 41966316 41982044 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4152 S 9 1 0 "" NA12878 nsv832989 15 42093761 42249002 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451930,nssv1451929 M 95 1 1 "" nsv94497 15 42172848 42177610 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv113075 M 24 "" nsv1516 15 42683454 42728383 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7162 S 9 0 1 "" NA12156 nsv1517 15 42741826 42777137 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1249 S 9 1 0 "" NA19240 dgv744e1 15 42756160 43210134 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv14507,esv509 M 271 0 0 "" NA19202 nsv832990 15 42778057 42950006 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451931 S 95 1 0 "" nsv457123 15 42861811 42886434 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534383 S 1557 0 1 "" 1780854205_A dgv745e1 15 42888144 43170912 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv9274,essv13303,essv8700 M 271 0 0 "" NA19137,NA19200,NA19202 esv34494 15 42893168 43055500 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6986004,essv6990489,essv6980493 M 771 1 0 "" NA19202 nsv7264 15 42901686 43201120 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1250,nssv9309 M 9 0 0 "" NA18517,NA19240 nsv9256 15 42905218 42906413 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25997,nssv27476,nssv22921,nssv26139,nssv22825,nssv22160,nssv25670 M 31 0 7 Samples from several populations that are part of the HapMap project. "" NA12740,NA18502,NA18853,NA18860,NA19132,NA19173,NA19221 nsv1518 15 42916510 42951638 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9958,nssv10049,nssv5552 M 9 3 0 "" NA18507,NA18956,NA19129 nsv442373 15 42919079 42933059 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv9257 15 42919264 42933373 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24700 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19240 essv7911 15 42922650 42933056 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19239 essv7982 15 42922650 42980909 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19240 nsv510396 15 42943890 42949890 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622254 S 4 0 1 "" NA10860 nsv442374 15 43012549 43021739 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv509570 15 43077474 43136632 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623675 S 4 1 0 "" NA18994 nsv9259 15 43104660 43113642 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22605,nssv25692,nssv22006,nssv24726,nssv22496,nssv20602,nssv27484,nssv23618,nssv24441,nssv22188,nssv26158,nssv22307,nssv25347,nssv22854,nssv25354 M 31 15 0 Samples from several populations that are part of the HapMap project. "" NA18504,NA18517,NA18537,NA18552,NA18563,NA18564,NA18860,NA18942,NA18972,NA19007,NA19132,NA19144,NA19173,NA19221,NA19240 nsv9260 15 43122110 43132241 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24752 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19240 nsv1519 15 43125918 43156734 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10050 S 9 1 0 "" NA18956 nsv9261 15 43153155 43154348 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27492,nssv26017,nssv26207,nssv25744 M 31 0 4 Samples from several populations that are part of the HapMap project. "" NA18502,NA18860,NA19132,NA19221 nsv9262 15 43174245 43176671 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22950 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA12740 nsv457125 15 43208010 43237615 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534384 S 1557 0 1 "" 1780862456_A nsv518213 15 43209050 43252060 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695638 S 2026 1 0 "" nsv520580 15 43225829 43244641 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv672790,nssv701619,nssv690520,nssv680288,nssv691819 M 2026 0 5 "" nsv469721 15 43396173 43575294 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649742 M 265 0 0 Samples from several populations that are part of the HapMap project. "" nsv1520 15 43433515 43467269 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7163,nssv2932 M 9 2 0 "" NA12156,NA18555 nsv442701 15 43524388 43536044 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv1523 15 43537192 43571117 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7164 S 9 0 1 "" NA12156 nsv519435 15 43564636 43566300 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696852 S 2026 0 1 "" nsv526945 15 43723047 43728981 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703315 S 2026 1 0 "" nsv523136 15 43778072 43945699 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698841 S 2026 0 1 "" nsv519033 15 43799412 43799987 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696502 S 2026 1 0 "" nsv1524 15 43817778 43848313 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7166 S 9 0 1 "" NA12156 nsv94913 15 43855257 43855606 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv113491 M 24 "" nsv519075 15 43945699 44057854 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696547 S 2026 0 1 "" nsv457126 15 43945699 44072202 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534385 S 1557 0 1 "" 1787431198_A nsv527235 15 44023757 44051085 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703635 S 2026 0 1 "" nsv832991 15 44183180 44367644 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451932 S 95 0 1 "" nsv522187 15 44632813 44734153 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694960 S 2026 0 1 "" nsv832992 15 44800077 44954199 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451933 S 95 0 1 "" nsv457127 15 44881142 44931678 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534386 S 1557 0 1 "" 1780854449_A nsv832994 15 44958531 45108602 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451934 S 95 0 1 "" nsv457128 15 44983658 45067947 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534387 S 1557 0 1 "" 1780862530_A nsv516821 15 45022956 45033943 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv671189,nssv689419 M 2026 0 2 "" nsv832995 15 45033185 45226668 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451935 S 95 1 0 "" nsv95007 15 45093927 45093927 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv113585 M 24 "" nsv1525 15 45251131 45269256 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9514 S 9 1 0 "" NA18507 nsv519284 15 45252991 45260460 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696765 S 2026 0 1 "" esv33210 15 45264821 45391601 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99532 S 51 1 0 "" 22335 nsv1526 15 45275174 45301774 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5555,nssv6631 M 9 2 0 "" NA12156,NA19129 nsv510875 15 45292641 45301298 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621634 S 4 0 0 "" NA15510 nsv457129 15 45381026 45438654 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534388 S 1557 0 1 "" 1782681096_A nsv832996 15 45626014 45768850 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451936 S 95 0 1 "" nsv457131 15 45866357 45994758 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534390 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00148 nsv457132 15 45894213 46137615 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534391 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00741 nsv832997 15 45913031 46124086 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451937 S 95 1 0 "" nsv522222 15 45933200 45944815 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694999 S 2026 0 1 "" nsv517293 15 45944335 45944815 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698919,nssv680815,nssv662641,nssv678864,nssv663300,nssv686202,nssv673533,nssv680289,nssv682018,nssv661465,nssv654588,nssv655234,nssv670451,nssv681666,nssv679356,nssv658838,nssv658442,nssv685399,nssv657441,nssv672656,nssv661559,nssv689840,nssv688788,nssv678414,nssv673252,nssv680200,nssv651702,nssv684501,nssv675145,nssv658804,nssv688742,nssv660245,nssv673219,nssv667465,nssv673125,nssv686869,nssv680910,nssv677236,nssv682434,nssv654225,nssv687739,nssv675667,nssv657095,nssv658065,nssv660469,nssv693982,nssv690179,nssv688003,nssv655629,nssv688481,nssv672675,nssv668268,nssv673446,nssv651967,nssv655752,nssv691649,nssv691820,nssv658046,nssv652214,nssv681404,nssv684473,nssv681356,nssv688066,nssv683223,nssv688810,nssv667707 M 2026 1 65 "" nsv525339 15 45967189 45971609 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701457 S 2026 0 1 "" nsv832998 15 45970190 46084095 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451939,nssv1451938 M 95 2 0 "" nsv524911 15 45993560 45999227 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700923 S 2026 0 1 "" nsv817691 15 45994758 45999227 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417471 S 112 0 1 "" NA18960 nsv442702 15 45995539 46001995 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv832999 15 46039586 46239697 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451940 S 95 1 0 "" dgv746e1 15 46296330 46451070 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv376,essv4844 M 271 0 0 "" NA18540 nsv526690 15 46307882 46309208 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703025 S 2026 0 1 "" nsv522923 15 46307882 46317232 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698584 S 2026 0 1 "" nsv521395 15 46463166 46465377 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698005 S 2026 0 1 "" nsv524644 15 46464675 46465377 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700610 S 2026 0 1 "" nsv817692 15 46481503 46488520 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416804 S 112 0 1 "" NA19159 nsv94450 15 46531586 46536922 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv113028 M 24 "" nsv833000 15 46619424 46760282 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451942,nssv1451941 M 95 2 0 "" nsv510397 15 46797545 46803545 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621423 S 4 0 1 "" NA15510 nsv833001 15 46830935 46992057 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451943,nssv1451944 M 95 2 0 "" nsv1527 15 47140948 47170152 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10051 S 9 1 0 "" NA18956 nsv833002 15 47408692 47569091 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451945 S 95 1 0 "" nsv442375 15 47439816 47471374 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv9263 15 47521727 47596757 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22337 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18563 nsv526246 15 47525525 47537027 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702518 S 2026 0 1 "" nsv1528 15 47855250 47900250 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7167 S 9 0 1 "" NA12156 nsv833003 15 47887664 48060601 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451946 S 95 0 1 "" nsv1529 15 47965957 47998461 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10052 S 9 1 0 "" NA18956 nsv517014 15 47984948 47985098 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv668404,nssv653617,nssv689334,nssv667248,nssv675108,nssv664524,nssv661676,nssv653303 M 2026 0 8 "" nsv457133 15 48022455 48062348 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534392 S 1557 0 1 "" 1780862001_A nsv1530 15 48089816 48134908 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7168 S 9 0 1 "" NA12156 nsv529006 15 48192467 48192536 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705715 S 2026 1 0 "" dgv147n21 15 48256251 48256580 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv525505,nsv526926 M 2026 0 2 "" nsv1531 15 48305297 48336567 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6632 S 9 1 0 "" NA12156 nsv507779 15 48308483 48314483 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619145 S 4 1 0 "" NA10860 nsv524613 15 48443741 48656071 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700574 S 2026 0 1 "" dgv317n27 15 48558160 48976999 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv457134,nsv457135 M 1557 2 0 "" HGDP00614,HGDP00615 nsv1532 15 48715912 48746543 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10053 S 9 1 0 "" NA18956 nsv524596 15 48731881 48734053 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700557 S 2026 0 1 "" nsv457137 15 48806409 48904816 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534395 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00977 nsv516168 15 48901729 49004653 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv666589,nssv692579 M 2026 2 0 "" nsv95030 15 48956969 48956969 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv113608 M 24 "" nsv507780 15 48968993 48974993 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623186,nssv620583,nssv617898,nssv619146 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 esv34532 15 49063420 49540148 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6978321,essv6986593,essv6986594,essv6978323,essv6978322 M 771 1 0 "" NA19000 dgv747e1 15 49069549 49617631 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv880,esv593,essv2770 M 271 0 0 "" NA19000 nsv9264 15 49072014 49079553 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25766 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19132 esv33352 15 49090339 49104954 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100087 S 51 0 1 "" 22086 nsv1534 15 49195972 49230090 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7169 S 9 1 0 "" NA12156 nsv9265 15 49406890 49410523 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20029,nssv22526 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18572,NA19007 nsv94788 15 49472210 49472210 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv113366 M 24 "" nsv457138 15 49626011 49677574 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534396 S 1557 0 1 "" NINDS_223 nsv1535 15 49629184 49663068 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2933,nssv5556 M 9 2 0 "" NA18555,NA19129 nsv457139 15 49642010 49764451 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534397 S 1557 0 1 "" NINDS_219 nsv94648 15 49684994 49685332 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv113226 M 24 "" nsv442376 15 50053027 50060576 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv517399 15 50054170 50092756 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv676280,nssv674586,nssv656472,nssv657558,nssv690284,nssv663778,nssv656162,nssv689841,nssv676006,nssv652168,nssv688482,nssv702403,nssv654690,nssv678456,nssv678240,nssv692512,nssv662423,nssv698150,nssv654804,nssv678390,nssv681736,nssv683432,nssv693405,nssv682435,nssv658594,nssv651906,nssv678772,nssv657809,nssv687192,nssv666613,nssv673159,nssv662680,nssv658637,nssv660055,nssv667497 M 2026 0 35 "" nsv510398 15 50055993 50061993 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621424 S 4 0 1 "" NA15510 nsv1536 15 50063585 50108211 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7170 S 9 0 1 "" NA12156 nsv833005 15 50177161 50328622 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451947 S 95 1 0 "" nsv1537 15 50289538 50324359 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7171 S 9 0 1 "" NA12156 nsv507781 15 50567336 50573336 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620584 S 4 1 0 "" NA15510 nsv833006 15 50613246 50827754 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451948 S 95 1 0 "" nsv457140 15 50688725 50756038 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534398 S 1557 0 1 "" 1780854103_A nsv515534 15 50785554 50812984 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv673845,nssv663850 M 2026 2 0 "" nsv457142 15 50829179 50879188 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534400 S 1557 1 0 "" NINDS_54 nsv1538 15 50898077 50935372 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7172 S 9 0 1 "" NA12156 nsv833007 15 51051856 51240817 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451949 S 95 0 1 "" nsv1539 15 51270162 51306051 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5557,nssv1251 M 9 2 0 "" NA19129,NA19240 nsv510399 15 51361914 51367914 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624170,nssv618411,nssv622255,nssv621425 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv457143 15 51362944 51390980 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534401 S 1557 0 1 "" 1782681112_A nsv833008 15 51417763 51567910 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451950 S 95 0 1 "" nsv833009 15 51540193 51722595 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451951 S 95 1 0 "" nsv519399 15 51550652 51573583 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696833 S 2026 0 1 "" dgv748e1 15 51557013 51572775 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1042,essv2397 M 271 0 0 "" NA18976 nsv9266 15 51572719 51577601 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27500 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19221 nsv9267 15 51608297 51919904 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26226 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18860 nsv527474 15 51661883 51779125 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703918 S 2026 0 1 "" dgv318n27 15 51677654 52244046 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv457144,nsv457145 M 1557 2 0 "" HGDP00130,HGDP00726 nsv833010 15 51722944 51887141 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451952 S 95 1 0 "" nsv510400 15 51742689 51748689 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621426 S 4 0 1 "" NA15510 nsv527020 15 51763459 51763689 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703395 S 2026 0 1 "" nsv457146 15 51790383 51809415 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534404 S 1557 0 1 "" 1780854128_A nsv457147 15 51868102 51944272 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534405 S 1557 1 0 "" 1780854382_A nsv457148 15 51940754 51959844 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534406 S 1557 0 1 "" 1780854299_A nsv833011 15 52013527 52208859 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451953,nssv1451954 M 95 1 1 "" nsv833012 15 52140912 52180322 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451958,nssv1451961,nssv1451960,nssv1451959,nssv1451957,nssv1451955,nssv1451956 M 95 1 6 "" nsv507782 15 52201742 52207742 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623187 S 4 1 0 "" NA18994 nsv523769 15 52222160 52225168 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699591 S 2026 0 1 "" nsv457149 15 52248833 52275351 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534407 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00828 nsv518871 15 52283894 52286884 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696327 S 2026 1 0 "" dgv148n21 15 52541477 52566604 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv516912,nsv518418 M 2026 5 0 "" nsv526413 15 52663715 52692074 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702713 S 2026 1 0 "" nsv94299 15 52682374 52682374 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv112877 M 24 "" nsv833013 15 52715117 52922566 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451962 S 95 1 0 "" nsv457155 15 52730485 52866015 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534409 S 1557 0 1 "" 1780854257_A esv32954 15 52743189 52746293 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100057 S 51 0 1 "" 22086 esv2750738 15 52747818 52754510 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100310 S 51 0 1 "" 22300 esv33842 15 52771736 52773615 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97604,essv101164,essv93900,essv96811,essv101062,essv94108,essv101304,essv94380,essv97932,essv93165,essv95247,essv97337,essv95764,essv94502,essv92696,essv93743,essv96091,essv96669,essv93316,essv92528,essv98062,essv96427,essv97753,essv96414 M 51 24 0 "" 21616,21618,21634,21659,21693,21802,21805,21808,21837,21863,21872,21879,21911,21932,21944,21972,22007,22011,22170,22233,22259,22261,22278,22371 esv32807 15 52786699 52786852 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97860 S 51 1 0 "" 21837 esv32684 15 52796400 52796779 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98818 S 51 0 1 "" 21606 esv33958 15 52811960 52814422 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99188 S 51 1 0 "" 22275 esv32725 15 52851606 52851930 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100734,essv100939,essv94813,essv94026,essv101283,essv95541,essv93100,essv95904,essv94605,essv96577,essv100020,essv95976,essv93267,essv92515 M 51 8 6 "" 21656,21693,21791,21802,21805,21847,21863,21911,21932,22011,22086,22127,22170,22233 nsv525041 15 52855501 52924047 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701085 S 2026 0 1 "" nsv833014 15 52886475 53036783 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451963,nssv1451965,nssv1451966,nssv1451967,nssv1451964 M 95 3 2 "" nsv1540 15 52900065 52938035 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5558,nssv1252 M 9 2 0 "" NA19129,NA19240 nsv516656 15 52918575 52924047 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698913,nssv673895,nssv703978,nssv669928,nssv672172,nssv695446 M 2026 0 6 "" nsv525327 15 52926714 52947687 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701437 S 2026 0 1 "" nsv1541 15 52977763 53034494 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6633,nssv4153,nssv10054,nssv10931,nssv2108 M 9 0 5 "" NA12156,NA12878,NA15510,NA18555,NA18956 nsv510661 15 52994810 53014049 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617420,nssv618926,nssv620084,nssv622694 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv111 15 52995999 53034494 CNV Loss Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv111 S 1 0 1 "" NA15510 nsv9268 15 53020920 53031217 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26245,nssv27538 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18860,NA19221 nsv457156 15 53187941 53253447 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534410 S 1557 0 1 "" NINDS_242 nsv525768 15 53253447 53272786 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701936 S 2026 0 1 "" nsv520799 15 53432953 53547814 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697618 S 2026 0 1 "" nsv833016 15 53536461 53685198 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451968 S 95 1 0 "" nsv1542 15 53541434 53575897 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2934 S 9 1 0 "" NA18555 nsv817693 15 53576124 53596952 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416805,nssv1416807 M 112 0 2 "" NA19159,NA19160 nsv94482 15 53655973 53656250 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv113060 M 24 "" nsv457158 15 53717834 53769549 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534411 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01164 nsv833017 15 53753249 53945204 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451969 S 95 0 1 "" nsv528617 15 53989361 53995275 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705246 S 2026 0 1 "" nsv1543 15 54013581 54065709 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2936,nssv10055,nssv7174,nssv1253 M 9 4 0 "" NA12156,NA18555,NA18956,NA19240 nsv509571 15 54014039 54083635 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623676 S 4 1 0 "" NA18994 dgv319n27 15 54060738 54111743 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv457160,nsv457161 M 1557 0 2 "" 1780862101_A,1780862416_A dgv149n21 15 54096833 54105676 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv528383,nsv522734 M 2026 0 2 "" nsv833018 15 54113091 54279827 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451970 S 95 1 0 "" nsv522888 15 54150260 54156416 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698546 S 2026 0 1 "" nsv519725 15 54272890 54283874 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv657934,nssv689625 M 2026 0 2 "" nsv833019 15 54273321 54437225 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451971 S 95 1 0 "" nsv528965 15 54276451 54291890 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705664 S 2026 0 1 "" nsv510401 15 54306188 54312188 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618412 S 4 0 1 "" CHM nsv1545 15 54446790 54684673 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9516,nssv6634 M 9 0 2 "" NA12156,NA18507 dgv10n31 15 54447001 54683677 CNV Deletion Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis nsv471506,nsv471330 M 3 "" nsv433294 15 54463749 54640827 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463175 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA18507 esv35150 15 54465022 54683596 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6979210,essv6988126,essv6979211,essv6979212 M 771 0 1 "" NA18507 nsv510662 15 54473645 54522839 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622695 S 4 0 1 "" NA18994 nsv9270 15 54474238 54547712 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27546 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19221 dgv749e1 15 54523770 54577372 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv13317,esv1313 M 271 0 0 "" NA18507 nsv9271 15 54577013 54618847 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23599,nssv21843 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA07048,NA12155 nsv442703 15 54577995 54588269 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv438271 15 54579728 54582930 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470666,nssv470665 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA18561,NA18605 nsv833020 15 54843239 55003360 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451972,nssv1451973 M 95 1 1 "" nsv457162 15 54870298 55013058 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534414 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01023 nsv94695 15 54904223 54904223 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv113273 M 24 "" nsv94861 15 55250144 55250293 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv113439 M 24 "" nsv457164 15 55282352 55346679 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534416 S 1557 0 1 "" 1780854023_A nsv833021 15 55282705 55538658 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451975,nssv1451974 M 95 2 0 "" nsv1546 15 55343246 55376902 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1254 S 9 1 0 "" NA19240 nsv526342 15 55353151 55384572 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702634 S 2026 1 0 "" nsv94818 15 55354818 55354818 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv113396 M 24 "" nsv94799 15 55354881 55354881 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv113377 M 24 "" nsv7266 15 55374016 59484720 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6635 S 9 0 0 "" NA12156 esv2751536 15 55414700 55575700 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6988433,essv6985630,essv6981657,essv6981656,essv6981655 M 771 1 0 "" BEC_312 dgv43n6 15 55428740 55438437 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv94710,nsv95017 M 24 "" nsv457166 15 55431559 55563118 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534417 S 1557 1 0 "" 1782681495_A nsv516366 15 55431559 55568330 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv688615,nssv683558,nssv668668,nssv682044,nssv705716,nssv692257,nssv687907,nssv660246,nssv667792,nssv655031,nssv692279 M 2026 10 1 "" nsv833022 15 55444704 55617404 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451979,nssv1451981,nssv1451978,nssv1451977,nssv1451980,nssv1451976 M 95 6 0 "" nsv94840 15 55709477 55718704 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv113418 M 24 "" dgv150n21 15 55737926 55740856 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv524912,nsv518825 M 2026 0 2 "" nsv1547 15 55821954 55856468 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2937 S 9 1 0 "" NA18555 nsv1548 15 55926365 55961018 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1255 S 9 1 0 "" NA19240 nsv833023 15 55949131 56127466 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451982 S 95 1 0 "" nsv522269 15 56021414 56021505 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695049 S 2026 0 1 "" nsv1549 15 56202106 56235257 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2109 S 9 1 0 "" NA18555 nsv457172 15 56205187 56244799 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534418 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00814 nsv833024 15 56234751 56409255 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451983 S 95 0 1 "" nsv1550 15 56258052 56267108 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4154 S 9 1 0 "" NA12878 nsv510402 15 56365379 56371379 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618413 S 4 0 1 "" CHM nsv518436 15 56408088 56410700 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695872 S 2026 0 1 "" nsv520731 15 56410700 56410817 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv674848,nssv682284 M 2026 0 2 "" nsv522166 15 56410700 56411620 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694939 S 2026 0 1 "" nsv524065 15 56513131 56518181 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699933 S 2026 0 1 "" nsv524098 15 56608270 56621683 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699973 S 2026 0 1 "" nsv522373 15 56616827 56624230 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694160 S 2026 0 1 "" nsv94680 15 56630284 56630470 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv113258 M 24 "" nsv1551 15 56678931 56723872 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7175 S 9 0 1 "" NA12156 nsv518097 15 56746565 56752223 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695510 S 2026 0 1 "" nsv527307 15 56890620 57805779 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703727 S 2026 1 0 "" nsv94675 15 56952173 56961672 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv113253 M 24 "" dgv151n21 15 57055702 57182476 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv520872,nsv520679 M 2026 2 0 "" nsv94885 15 57060403 57061750 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv113463 M 24 "" nsv510663 15 57097968 57157333 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618927 S 4 0 1 "" NA10860 nsv833025 15 57123440 57309468 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451985,nssv1451984 M 95 2 0 "" nsv520769 15 57158955 57162395 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697600 S 2026 1 0 "" nsv833027 15 57262098 57395836 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451988,nssv1451986,nssv1451987,nssv1451989 M 95 1 3 "" nsv457175 15 57397045 57468506 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534420 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01179 nsv524569 15 57454284 57499719 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700524 S 2026 1 0 "" nsv517855 15 57457629 57457699 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695259 S 2026 0 1 "" nsv1552 15 57548344 57580045 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5559 S 9 1 0 "" NA19129 nsv527754 15 57635763 57642518 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704241 S 2026 0 1 "" nsv523274 15 57758927 57760855 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699008 S 2026 0 1 "" nsv526682 15 57780050 57782235 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703014 S 2026 0 1 "" nsv510403 15 57817520 57823520 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618414,nssv622256 M 4 0 2 "" CHM,NA10860 nsv1553 15 57996653 58022235 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7176 S 9 0 1 "" NA12156 nsv833028 15 58014857 58205404 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451990 S 95 1 0 "" nsv1554 15 58061110 58100602 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7177 S 9 0 1 "" NA12156 nsv525689 15 58528133 58610709 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701847 S 2026 1 0 "" nsv507783 15 58533225 58539225 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619147,nssv617899,nssv620585,nssv623188 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv527607 15 58533897 58587201 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704069 S 2026 0 1 "" nsv507784 15 58593094 58599094 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617900,nssv619148,nssv623189,nssv620586 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv525850 15 58614722 58620311 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702044 S 2026 0 1 "" nsv522462 15 58620311 58624086 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705826 S 2026 0 1 "" nsv1556 15 58903782 58924792 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7178 S 9 1 0 "" NA12156 esv33678 15 59011012 59011954 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93605 S 51 0 1 "" 21972 nsv529007 15 59024692 59055574 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705717 S 2026 1 0 "" nsv520362 15 59056537 59065514 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv682198,nssv698504,nssv663239 M 2026 0 3 "" nsv520539 15 59078721 59089338 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697475 S 2026 0 1 "" nsv518973 15 59082118 59084249 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696441 S 2026 0 1 "" nsv524148 15 59103494 59105034 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700027 S 2026 0 1 "" nsv833029 15 59431257 59611991 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451991 S 95 1 0 "" nsv1557 15 59435870 59463043 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4155 S 9 1 0 "" NA12878 dgv750e1 15 59467652 59487950 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1204,essv24037 M 271 0 0 "" NA12873 nsv527951 15 59470226 59486467 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704460 S 2026 0 1 "" nsv520541 15 59486467 59490071 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697476 S 2026 0 1 "" nsv9272 15 59490146 59497873 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22218,nssv21624,nssv22556,nssv25379,nssv20632,nssv22555 M 31 0 6 Samples from several populations that are part of the HapMap project. "" NA18564,NA18942,NA18972,NA18975,NA18980,NA19007 nsv1558 15 59600999 59645735 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7179 S 9 0 1 "" NA12156 nsv833030 15 59647100 59849997 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451992 S 95 1 0 "" nsv1559 15 59799558 59811889 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10056 S 9 1 0 "" NA18956 dgv152n21 15 59917101 60127418 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv527451,nsv516639 M 2026 6 0 "" nsv521334 15 59917101 60127418 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697942 S 2026 0 1 "" nsv457176 15 59965987 60306950 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534421 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00708 nsv457177 15 60030489 60088386 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534422 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00798 nsv457178 15 60127418 60181616 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534423 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00966 nsv1560 15 60141556 60186596 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7180 S 9 0 1 "" NA12156 nsv442377 15 60248389 60254287 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv817694 15 60388808 60397435 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417155 S 112 1 0 "" NA18542 nsv833031 15 60409678 60588560 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451993 S 95 0 1 "" nsv94933 15 60493388 60495087 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv113511 M 24 "" nsv457179 15 60574381 60591780 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534424 S 1557 0 1 "" 1780862574_A nsv523993 15 60578488 60580422 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699849 S 2026 0 1 "" nsv515745 15 60580231 60580422 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv664651,nssv686158,nssv670044,nssv686311,nssv684223,nssv673921,nssv677749 M 2026 0 7 "" nsv1561 15 60767847 60795244 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2938 S 9 1 0 "" NA18555 nsv833032 15 60802733 60978555 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451994 S 95 0 1 "" nsv1562 15 60898806 60934203 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4156 S 9 1 0 "" NA12878 nsv94552 15 60905110 60905110 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv113130 M 24 "" nsv833033 15 60932059 61119643 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451995 S 95 1 0 "" nsv457180 15 60998928 61014881 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534425 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00928 nsv1563 15 61412641 61445848 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7181 S 9 1 0 "" NA12156 nsv1564 15 61430791 61440509 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7183 S 9 0 1 "" NA12156 nsv457181 15 61450464 61477597 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534426 S 1557 0 1 "" 1780862040_A nsv94259 15 61550443 61551456 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv112837 M 24 "" nsv833034 15 61579923 61736764 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451996 S 95 0 1 "" nsv833035 15 61712341 61886993 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451997 S 95 1 0 "" nsv1565 15 61766018 61783666 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7184 S 9 0 1 "" NA12156 nsv1567 15 61977557 62002023 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7185 S 9 0 1 "" NA12156 nsv1568 15 62075590 62132346 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10057,nssv2939 M 9 2 0 "" NA18555,NA18956 nsv1569 15 62112731 62157771 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7186 S 9 0 1 "" NA12156 nsv833036 15 62151744 62294441 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451998 S 95 0 1 "" nsv94545 15 62420232 62420556 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv113123 M 24 "" nsv94581 15 62451161 62451279 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv113159 M 24 "" nsv526185 15 62601346 62721035 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702447 S 2026 0 1 "" nsv833038 15 62602005 62803294 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1451999 S 95 0 1 "" nsv94275 15 62720487 62721603 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv112853 M 24 "" dgv31n68 15 62785585 63008644 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH nsv833039,nsv833040 M 95 0 3 "" nsv528510 15 62835362 62843096 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705117 S 2026 0 1 "" nsv833041 15 62917711 63049771 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452003,nssv1452004 M 95 0 2 "" nsv510404 15 63051299 63057299 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622258 S 4 0 1 "" NA10860 nsv1570 15 63166168 63184784 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7187 S 9 1 0 "" NA12156 nsv457182 15 63351648 63413272 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534427 S 1557 0 1 "" 1780854339_A nsv457183 15 63372790 63417235 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534428 S 1557 0 1 "" 1780854216_A nsv515939 15 63468854 63480609 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv668508,nssv675695,nssv673139,nssv654691,nssv676076,nssv655114,nssv683184,nssv672372,nssv690757,nssv668723,nssv685773,nssv665385,nssv674873,nssv680834,nssv696784 M 2026 0 15 "" nsv833042 15 63525470 63735787 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452005 S 95 0 1 "" nsv94754 15 63660685 63660852 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv113332 M 24 "" nsv833043 15 63717920 63880817 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452006 S 95 0 1 "" nsv833044 15 63845694 64048438 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452007 S 95 0 1 "" dgv751e1 15 63967839 64137439 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv320,essv20939 M 271 0 0 "" NA12801 nsv471684 15 63970181 64109461 CNV Gain Sharp et al 2005 15918152 BAC_aCGH,FISH Eichler Segmental Duplication BAC array nssv550570 S 48 1 0 "" NA10493 nsv509572 15 64049724 64192387 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621010,nssv623677 M 4 2 0 "" NA15510,NA18994 nsv1571 15 64053031 64061149 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7188 S 9 1 0 "" NA12156 nsv1572 15 64092331 64137449 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7189 S 9 0 1 "" NA12156 nsv1573 15 64172457 64191012 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2110,nssv5560,nssv9517,nssv10058,nssv4157,nssv10932,nssv6636 M 9 7 0 "" NA12156,NA12878,NA15510,NA18507,NA18555,NA18956,NA19129 nsv114 15 64178145 64183508 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv114 S 1 1 0 "" NA15510 nsv1574 15 64219274 64251569 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6637 S 9 1 0 "" NA12156 nsv516488 15 64283308 64286940 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv668669,nssv674632,nssv696931 M 2026 2 1 "" nsv833045 15 64374640 64539811 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452008 S 95 1 0 "" nsv94401 15 64443515 64445989 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv112979 M 24 "" nsv94993 15 64664702 64665468 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv113571 M 24 "" nsv522717 15 64880685 64883712 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698347 S 2026 0 1 "" nsv520187 15 64882683 64887905 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv675084,nssv683686,nssv687399,nssv685417,nssv661512,nssv702377 M 2026 0 6 "" nsv94295 15 64944042 64944042 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv112873 M 24 "" nsv1575 15 64950592 64996799 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10059 S 9 0 1 "" NA18956 esv2422426 15 64972986 65060948 CNV Deletion Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161515 S 181 0 1 "" ND01580 nsv507785 15 65155583 65161583 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623190 S 4 1 0 "" NA18994 nsv94737 15 65191729 65192658 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv113315 M 24 "" nsv457187 15 65201479 65221402 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534430 S 1557 0 1 "" NINDS_197 nsv94879 15 65688807 65688866 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv113457 M 24 "" nsv1576 15 65757034 65802127 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7190 S 9 0 1 "" NA12156 nsv1578 15 65907191 65941777 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4158 S 9 1 0 "" NA12878 nsv526037 15 65944935 65953984 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702269 S 2026 0 1 "" nsv94298 15 66044049 66046314 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv112876 M 24 "" nsv1579 15 66085354 66110257 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1256 S 9 1 0 "" NA19240 nsv517512 15 66106178 66212319 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv665203,nssv652239 M 2026 2 0 "" nsv521762 15 66136947 66258945 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694530 S 2026 1 0 "" nsv1580 15 66192717 66217802 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2111 S 9 0 1 "" NA18555 nsv94922 15 66213075 66215999 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv113500 M 24 "" nsv1581 15 66252362 66283615 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2112 S 9 1 0 "" NA18555 dgv752e1 15 66325126 66601717 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv79,esv222 M 271 0 0 "" NA18991 esv33024 15 66378913 66416071 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99866 S 51 1 0 "" 22086 nsv9273 15 66449997 66452336 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22190,nssv25788,nssv20261 M 31 0 3 Samples from several populations that are part of the HapMap project. "" NA12872,NA18853,NA19132 nsv1582 15 66472020 66477654 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1258 S 9 1 0 "" NA19240 nsv519824 15 66542892 66543755 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv658947,nssv671998,nssv677611 M 2026 0 3 "" nsv1583 15 66550240 66583411 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2113 S 9 1 0 "" NA18555 nsv529008 15 66573339 66615540 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705718 S 2026 0 1 "" nsv516489 15 66592483 66615540 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv682488,nssv704070,nssv662948,nssv668670,nssv658971 M 2026 4 1 "" nsv515835 15 66680043 66684126 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv664946,nssv683049 M 2026 0 2 "" nsv833046 15 66718767 66920813 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452009,nssv1452010 M 95 0 2 "" nsv457189 15 66774006 66797683 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534431 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01189 esv33989 15 66789809 66802029 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98908,essv100799,essv99799,essv93220 M 51 4 0 "" 21606,21656,22086,22170 nsv507786 15 66959403 66965403 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623191,nssv620588,nssv619149 M 4 3 0 "" NA10860,NA15510,NA18994 nsv1584 15 67013899 67023366 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7191 S 9 0 1 "" NA12156 esv33141 15 67076427 67076510 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv92722,essv97735 M 51 2 0 "" 21944,22278 esv33333 15 67093975 67094246 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93544 S 51 1 0 "" 22128 esv33369 15 67094663 67097566 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99925 S 51 1 0 "" 22086 nsv521203 15 67103257 67103840 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv685092,nssv687957,nssv693097,nssv685040 M 2026 0 4 "" nsv517185 15 67217070 67340176 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv669552,nssv672211,nssv663670,nssv653686,nssv666995,nssv659330,nssv665611,nssv673707,nssv697943,nssv680699,nssv656918,nssv665386,nssv651813 M 2026 12 1 "" dgv753e1 15 67421806 67579253 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv674,essv16864,essv13436,essv5818,essv22565,essv7033,essv6035,essv18583,essv7609,essv17609,essv3351,essv7104,essv7312,essv6318,essv20378,essv3999,essv6218,essv7811,esv8,essv7697,essv13936,essv21786,essv9367,essv8334,essv11863,essv18121,essv10888,essv22145,essv11522,essv18310,essv3751,essv23651 M 271 0 0 "" NA07348,NA10830,NA10846,NA10857,NA10863,NA11993,NA12234,NA12239,NA12753,NA18537,NA18545,NA18558,NA18566,NA18570,NA18571,NA18609,NA18612,NA18633,NA18636,NA18853,NA18854,NA18858,NA18945,NA18961,NA18970,NA18975,NA19173,NA19192,NA19205,NA19209,NA19221 nsv94997 15 67462751 67462841 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv113575 M 24 "" nsv520964 15 67504090 67581007 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697711 S 2026 1 0 "" nsv1585 15 67523060 67549506 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10933 S 9 1 0 "" NA15510 nsv1586 15 67576700 67608388 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10060 S 9 1 0 "" NA18956 nsv1587 15 67644339 67660958 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7192 S 9 1 0 "" NA12156 nsv526222 15 67644716 67645616 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702487 S 2026 0 1 "" nsv528922 15 67645191 67645616 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705610 S 2026 0 1 "" nsv1589 15 67662482 67696149 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4159 S 9 1 0 "" NA12878 nsv1590 15 67797233 67828911 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4161 S 9 1 0 "" NA12878 nsv523368 15 67898627 67928959 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699117 S 2026 0 1 "" nsv833047 15 67942185 68102408 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452012,nssv1452011,nssv1452013,nssv1452014 M 95 4 0 "" nsv528784 15 67977049 67982072 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705451 S 2026 1 0 "" nsv1591 15 67983110 68027376 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2114 S 9 0 1 "" NA18555 nsv518046 15 67998960 68003136 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695457 S 2026 0 1 "" nsv527821 15 68033803 68036014 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704316 S 2026 0 1 "" nsv524277 15 68230439 68238590 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700176 S 2026 0 1 "" nsv526608 15 68262754 68264958 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702928 S 2026 0 1 "" dgv320n27 15 68262754 68277704 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv457191,nsv457190 M 1557 0 2 "" HGDP01153,HGDP01163 nsv457192 15 68320486 68385295 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534434 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01094 nsv509573 15 68341110 68368451 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621011 S 4 1 0 "" NA15510 nsv507787 15 68361233 68367233 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619150,nssv617901,nssv623192 M 4 3 0 "" CHM,NA10860,NA18994 nsv509574 15 68496850 68694585 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623678 S 4 1 0 "" NA18994 nsv1592 15 68541088 68586197 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7193 S 9 0 1 "" NA12156 nsv94615 15 68610859 68610859 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv113193 M 24 "" nsv1593 15 68621050 68656398 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1259 S 9 1 0 "" NA19240 nsv833049 15 68661842 68766630 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452015 S 95 0 1 "" nsv1594 15 68724650 68757094 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5561 S 9 1 0 "" NA19129 nsv524129 15 68754608 68770096 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700007 S 2026 0 1 "" nsv817696 15 68754608 68783807 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417476 S 112 1 0 "" NA18960 nsv526172 15 68767370 68823780 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702433 S 2026 0 1 "" nsv1595 15 68792505 68833994 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5562,nssv1260 M 9 0 2 "" NA19129,NA19240 nsv94433 15 68808894 68814562 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv113011 M 24 "" nsv9274 15 68814996 68840868 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20059 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18572 dgv754e1 15 68815452 68834724 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv6522,esv1041 M 271 0 0 "" NA18572 nsv94637 15 68851911 68853938 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv113215 M 24 "" dgv153n21 15 68959752 69154066 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv521336,nsv523555 M 2026 0 2 "" nsv457193 15 69023413 69154066 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534435 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00023 nsv1596 15 69205084 69238505 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7194 S 9 0 1 "" NA12156 nsv457194 15 69222676 69488714 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534436 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01030 nsv469595 15 69245578 69413360 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649710 M 265 0 16 Samples from several populations that are part of the HapMap project. "" nsv1597 15 69334822 69369539 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2940 S 9 1 0 "" NA18555 dgv154n21 15 69368644 69370467 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv520109,nsv522384 M 2026 0 4 "" nsv516900 15 69404788 69418974 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv654753,nssv680189 M 2026 0 2 "" nsv524913 15 69412176 69455566 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700925 S 2026 1 0 "" nsv1598 15 69438585 69460828 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4162 S 9 1 0 "" NA12878 nsv1600 15 69472915 69508151 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4163,nssv6638,nssv1261 M 9 0 3 "" NA12156,NA12878,NA19240 nsv510664 15 69486902 69507958 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620085 S 4 0 1 "" NA15510 nsv521742 15 69507998 69518209 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694506 S 2026 1 0 "" nsv525831 15 69630134 69635366 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702021 S 2026 1 0 "" nsv833050 15 69635673 69767946 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452016 S 95 1 0 "" nsv528698 15 69647900 69663064 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705344 S 2026 1 0 "" nsv520258 15 69688282 69689872 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv662142,nssv685728 M 2026 2 0 "" nsv507788 15 69811068 69817068 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617902,nssv619151,nssv620589 M 4 3 0 "" CHM,NA10860,NA15510 nsv94608 15 69836935 69836935 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv113186 M 24 "" nsv516871 15 69913088 70112649 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694825,nssv692778,nssv658146,nssv696349,nssv702292,nssv654609 M 2026 1 5 "" nsv457195 15 69964713 70037795 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534437 S 1557 0 1 "" NINDS_146 nsv510405 15 70006420 70012420 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618415,nssv621427,nssv622259 M 4 0 3 "" CHM,NA10860,NA15510 nsv457199 15 70048439 70089721 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534439 S 1557 0 1 "" NINDS_222 nsv457200 15 70048439 70112649 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534440 S 1557 0 1 "" NINDS_223 nsv457201 15 70071701 70116960 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534441 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01355 nsv833051 15 70102525 70295483 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452017 S 95 1 0 "" nsv510665 15 70161916 70194602 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617422 S 4 0 1 "" CHM nsv1601 15 70336939 70372230 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5563 S 9 0 1 "" NA19129 nsv7267 15 70410236 70441749 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1262 S 9 0 0 "" NA19240 nsv521971 15 70453478 70465792 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694740 S 2026 1 0 "" nsv469704 15 70456428 70640981 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649725 M 265 0 3 Samples from several populations that are part of the HapMap project. "" dgv755e1 15 70606839 70907613 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv12598,esv389,essv23012,essv23926 M 271 0 0 "" NA12812,NA12814,NA19098 nsv521972 15 70646824 70665826 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694741 S 2026 1 0 "" nsv9275 15 70725990 70750328 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22883,nssv25810 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA19132,NA19173 nsv94389 15 70767826 70771698 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv112967 M 24 "" nsv1602 15 70929694 70952477 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7195 S 9 1 0 "" NA12156 nsv521475 15 71037538 71050458 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698087 S 2026 0 1 "" nsv528233 15 71071234 71074205 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704795 S 2026 0 1 "" nsv94939 15 71082778 71088221 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv113517 M 24 "" nsv517966 15 71136686 71275806 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695378 S 2026 1 0 "" nsv525462 15 71136686 71350548 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701590 S 2026 0 1 "" nsv527236 15 71208292 71256588 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703636 S 2026 1 0 "" nsv94493 15 71374538 71374538 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv113071 M 24 "" nsv524049 15 71399886 71467354 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699913 S 2026 0 1 "" nsv525433 15 71553125 71620653 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701560 S 2026 0 1 "" nsv1603 15 71978275 72022786 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4636 S 9 0 1 "" NA19129 nsv1604 15 71982673 72016254 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7196 S 9 1 0 "" NA12156 dgv756e1 15 72002167 72251969 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv13683,esv124,essv20902,essv23056,essv12604,essv23884,essv11247 M 271 0 0 "" NA12801,NA12812,NA12814,NA19098,NA19119,NA19204 nsv833052 15 72037431 72164203 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452019,nssv1452018 M 95 1 1 "" nsv518316 15 72078046 72118136 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695747 S 2026 1 0 "" nsv469619 15 72078912 72253374 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649544 M 265 0 2 Samples from several populations that are part of the HapMap project. "" nsv457203 15 72095993 72134776 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534442 S 1557 0 1 "" 1780854065_A nsv509575 15 72097791 72181798 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619668 S 4 1 0 "" NA10860 nsv510666 15 72097791 72181798 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622696 S 4 0 1 "" NA18994 nsv817697 15 72123686 72130383 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416100,nssv1416101 M 112 2 0 "" NA12801,NA12813 nsv9276 15 72141721 72170035 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24777,nssv22912 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA19173,NA19240 nsv1605 15 72146725 72156543 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2116,nssv4164,nssv5564 M 9 3 0 "" NA12878,NA18555,NA19129 nsv833053 15 72147209 72342193 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452020 S 95 0 1 "" nsv471380 15 72149251 72161944 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548113,nssv548115,nssv548114 M 3 "" nsv482178 15 72149251 72161944 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558539 S 1 1 0 "" KB1 nsv7268 15 72151413 73356183 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2115 S 9 0 0 "" NA18555 nsv1606 15 72156884 72163808 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6640 S 9 1 0 "" NA12156 nsv1607 15 72163815 72180018 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10063,nssv10062 M 9 1 0 "" NA18956 nsv833054 15 72244696 72412336 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452021 S 95 0 1 "" nsv510938 15 72270003 72452252 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622414 S 4 0 0 "" NA10860 nsv507789 15 72292248 72298248 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623194 S 4 1 0 "" NA18994 nsv1608 15 72344914 72377014 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6641 S 9 1 0 "" NA12156 nsv1609 15 72398516 72405908 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1263 S 9 1 0 "" NA19240 nsv1611 15 72613277 72642948 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10064 S 9 1 0 "" NA18956 nsv457204 15 72672144 72735116 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534443 S 1557 0 1 "" NINDS_70 nsv817698 15 72676216 72806502 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415707 S 112 1 0 "" NA12248 nsv527730 15 72702941 72707585 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704212 S 2026 0 1 "" nsv833055 15 72775397 72953341 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452022 S 95 0 1 "" nsv520527 15 72895689 72909909 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv672106,nssv689173 M 2026 0 2 "" nsv1612 15 73034778 73068337 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7198 S 9 0 1 "" NA12156 nsv527237 15 73092093 73108315 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703637 S 2026 0 1 "" nsv525506 15 73217579 73218848 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701638 S 2026 0 1 "" nsv833056 15 73240000 73401643 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452023 S 95 1 0 "" nsv1613 15 73329885 73375708 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6642,nssv1264 M 9 0 2 "" NA12156,NA19240 nsv115 15 73332126 73349115 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv115 S 1 1 0 "" NA15510 nsv1614 15 73332126 73349115 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10934 S 9 1 0 "" NA15510 nsv9277 15 73332278 73370641 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22941 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19173 nsv1615 15 73430790 73456972 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5565 S 9 1 0 "" NA19129 nsv525265 15 73457132 73479356 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701365 S 2026 1 0 "" nsv527186 15 73711498 73894785 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703582 S 2026 0 1 "" nsv1616 15 73876653 73909508 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5566 S 9 1 0 "" NA19129 nsv518214 15 74047485 74070997 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695639 S 2026 0 1 "" nsv518261 15 74061567 74070997 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695692 S 2026 0 1 "" nsv1617 15 74119158 74146490 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5567,nssv9959 M 9 0 2 "" NA18507,NA19129 nsv442705 15 74127925 74131944 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv833057 15 74154903 74372923 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452024 S 95 0 1 "" nsv1618 15 74285720 74319893 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7199 S 9 1 0 "" NA12156 nsv527608 15 74317322 74349793 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704071 S 2026 0 1 "" nsv520069 15 74389267 74396236 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697205 S 2026 0 1 "" nsv1619 15 74391671 74425425 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7200 S 9 1 0 "" NA12156 nsv525769 15 74419542 74448980 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701937 S 2026 0 1 "" nsv510667 15 74440414 74495365 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618928 S 4 0 1 "" NA10860 nsv507790 15 74449311 74455311 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617903 S 4 1 0 "" CHM nsv1620 15 74649207 74701343 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10936,nssv1265,nssv7201,nssv4165,nssv2117 M 9 0 5 "" NA12156,NA12878,NA15510,NA18555,NA19240 nsv510668 15 74666907 74688992 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617423 S 4 0 1 "" CHM nsv116 15 74667683 74701343 CNV Loss Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv116 S 1 0 1 "" NA15510 esv33866 15 74670838 74671135 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98738 S 51 0 1 "" 21606 nsv9278 15 74671122 74696180 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22367,nssv24467,nssv22220,nssv23646,nssv22635,nssv22970,nssv21576,nssv22397,nssv25832,nssv26037,nssv27554,nssv22354,nssv25372,nssv21654,nssv20291,nssv26263,nssv22248,nssv23627,nssv25404,nssv21362,nssv19865,nssv22979 M 31 18 3 Samples from several populations that are part of the HapMap project. "" NA07029,NA10839,NA10847,NA10863,NA12155,NA12740,NA12872,NA18502,NA18504,NA18517,NA18537,NA18563,NA18564,NA18853,NA18860,NA18972,NA18975,NA19132,NA19144,NA19173,NA19221 esv32734 15 74671135 74680367 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98832,essv101157,essv93855,essv100673,essv96868,essv96846,essv100989,essv98253,essv94754,essv94141,essv101423,essv97819,essv93060,essv101780,essv94632,essv92943,essv92707,essv93719,essv96143,essv99924,essv99612,essv94887,essv92591,essv100171,essv100533,essv100426,essv94222 M 51 10 16 "" 21606,21618,21634,21656,21659,21693,21772,21791,21802,21805,21837,21863,21909,21932,21939,21944,21972,22007,22086,22217,22231,22233,22286,22298,22300,22394 nsv507791 15 74675085 74681085 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619152 S 4 1 0 "" NA10860 nsv442706 15 74678296 74682830 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv457206 15 74758511 74908251 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534444 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00183 dgv757e1 15 74957605 75160503 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv231,essv20150 M 271 0 0 "" NA07345 nsv833058 15 75022950 75180695 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452026,nssv1452035,nssv1452025,nssv1452034,nssv1452028,nssv1452033,nssv1452030,nssv1452027,nssv1452032,nssv1452029,nssv1452031 M 95 0 11 "" nsv509576 15 75041415 75126733 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619670,nssv621012 M 4 2 0 "" NA10860,NA15510 nsv517068 15 75041599 75168277 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697169,nssv683277,nssv693432,nssv697047,nssv661834,nssv665263,nssv682226,nssv674633,nssv661383,nssv682321,nssv692684,nssv653725,nssv685115,nssv692990 M 2026 1 13 "" nsv1622 15 75101874 75131321 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5568,nssv9960,nssv1266,nssv6643,nssv2118 M 9 5 0 "" NA12156,NA18507,NA18555,NA19129,NA19240 nsv9279 15 75117343 75120152 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22250,nssv22036,nssv22999,nssv20321,nssv25429,nssv25397,nssv22384,nssv22586,nssv24493,nssv21606,nssv21452,nssv21684,nssv23674,nssv21873,nssv22278,nssv23654,nssv25853,nssv27562,nssv19810,nssv26281,nssv23008,nssv22585,nssv22457,nssv20351,nssv26057,nssv22665 M 31 13 12 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10863,NA11830,NA12740,NA12802,NA12872,NA18502,NA18504,NA18517,NA18537,NA18552,NA18563,NA18564,NA18853,NA18860,NA18972,NA18975,NA18980,NA19007,NA19132,NA19144,NA19173,NA19221 nsv1623 15 75323969 75357684 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7202 S 9 1 0 "" NA12156 esv33934 15 75335819 75366579 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93090,essv99806,essv94266 M 51 0 3 "" 21863,22086,22394 nsv1624 15 75594676 75631874 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7203,nssv10065 M 9 2 0 "" NA12156,NA18956 nsv833060 15 75603709 75822259 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452036 S 95 1 0 "" nsv94941 15 75697917 75698290 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv113519 M 24 "" nsv833061 15 75785429 75908960 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452037,nssv1452038,nssv1452039 M 95 0 3 "" nsv1625 15 75814889 75848370 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5569 S 9 1 0 "" NA19129 nsv833062 15 75822261 76007413 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452040 S 95 0 1 "" nsv519383 15 75871153 75877685 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696824 S 2026 0 1 "" nsv9281 15 76000195 76012550 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23027 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19173 nsv1626 15 76105766 76141035 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4166 S 9 1 0 "" NA12878 nsv94529 15 76195877 76196643 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv113107 M 24 "" nsv94621 15 76196369 76196643 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv113199 M 24 "" nsv526717 15 76197344 76200071 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703057 S 2026 0 1 "" nsv833063 15 76392270 76542000 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452041 S 95 0 1 "" nsv1627 15 76470816 76515659 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7204 S 9 0 1 "" NA12156 nsv94512 15 76581214 76588277 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv113090 M 24 "" nsv518840 15 76658343 76674226 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696293 S 2026 0 1 "" nsv457208 15 76695087 76806665 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534446 S 1557 1 0 "" NINDS_105 nsv1628 15 76696567 76729001 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4167 S 9 1 0 "" NA12878 dgv8e24 15 76715000 76716971 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH esv2750525,esv2750511,esv2750577,esv2750510,esv2750481,esv2750484,esv2750494,esv2750498,esv2750521,esv2750528,esv2750531,esv2750532,esv2750534,esv2750542,esv2750543,esv2750547,esv2750581,esv2750662,esv2750663,esv2750673,esv2750693,esv2750713,esv2750732,esv2750755,esv2750661,esv2750716,esv2750635,esv2750634 M 51 0 28 "" 21606,21618,21659,21693,21721,21805,21808,21817,21837,21841,21863,21872,21879,21909,21932,21939,22007,22011,22127,22128,22170,22217,22275,22286,22298,22300,22371,22394 esv2750601 15 76715000 76716971 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv94857 S 51 1 0 "" 22231 nsv457209 15 76736182 76773860 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534447 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01284 esv33573 15 76840539 77080936 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99948,essv94264 M 51 1 1 "" 22086,22394 nsv94789 15 76865446 76865446 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv113367 M 24 "" nsv522996 15 76962868 76979471 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698666 S 2026 0 1 "" nsv1629 15 76989411 77019427 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2119 S 9 1 0 "" NA18555 nsv509577 15 77081239 77163371 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619671 S 4 1 0 "" NA10860 nsv525630 15 77131379 77146365 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701783 S 2026 0 1 "" dgv758e1 15 77142292 77305824 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv9458,esv6 M 271 0 0 "" NA19208 nsv9282 15 77197915 77201443 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24519 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18504 nsv516129 15 77218118 77232844 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv652530,nssv659379 M 2026 0 2 "" nsv519998 15 77226214 77242544 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697170 S 2026 0 1 "" nsv520845 15 77234865 77266102 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697646 S 2026 0 1 "" nsv521713 15 77252655 77266102 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698340 S 2026 0 1 "" nsv517612 15 77335132 77340959 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv691375,nssv652507,nssv679021,nssv673081,nssv680041,nssv664652,nssv666851,nssv677527 M 2026 0 8 "" nsv9283 15 77335153 77341881 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23055 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19173 nsv442378 15 77335797 77340887 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv817699 15 77336617 77340959 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416602,nssv1416601 M 112 0 2 "" NA19171,NA19173 dgv759e1 15 77337962 77340626 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1429,essv12115 M 271 0 0 "" NA19173 nsv524829 15 77428822 77439797 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700830 S 2026 0 1 "" nsv1630 15 77514717 77529315 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1267 S 9 1 0 "" NA19240 nsv94344 15 77591689 77592047 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv112922 M 24 "" dgv44n6 15 77631955 77632093 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv94556,nsv94771 M 24 "" nsv1631 15 77663014 77670740 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9518 S 9 1 0 "" NA18507 nsv833064 15 77706273 77907065 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452042 S 95 0 1 "" nsv507792 15 77707987 77713987 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623195 S 4 1 0 "" NA18994 dgv760e1 15 77737577 77850372 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv20867,esv1199 M 271 0 0 "" NA12145 nsv833065 15 77840058 78061877 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452043 S 95 0 1 "" nsv516206 15 77847322 77852392 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv692280,nssv686291,nssv666819 M 2026 0 3 "" nsv525590 15 77852392 77859875 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701732 S 2026 0 1 "" nsv833066 15 77957475 78112638 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452044 S 95 0 1 "" nsv510406 15 77985681 77991681 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618416 S 4 0 1 "" CHM dgv155n21 15 77998468 78003070 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv524197,nsv525035 M 2026 0 2 "" nsv526014 15 78124281 78230091 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702242 S 2026 0 1 "" nsv1634 15 78206366 78251710 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6644 S 9 0 1 "" NA12156 nsv817700 15 78240785 78247579 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417190 S 112 0 1 "" NA18558 nsv1635 15 78289086 78324339 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1268 S 9 1 0 "" NA19240 nsv442379 15 78310026 78313661 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv1636 15 78366361 78398721 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5570 S 9 1 0 "" NA19129 nsv471685 15 78610256 78790444 CNV Gain Sharp et al 2005 15918152 BAC_aCGH,FISH Eichler Segmental Duplication BAC array nssv549896 S 48 1 0 "" NA10493 nsv94357 15 78911758 78918685 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv112935 M 24 "" nsv94617 15 78992928 78992928 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv113195 M 24 "" nsv1637 15 79070446 79115239 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7206 S 9 0 1 "" NA12156 nsv518014 15 79161186 79169043 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695426 S 2026 0 1 "" nsv520339 15 79406760 79413780 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv684116,nssv685041,nssv679948,nssv678725,nssv692346,nssv663070 M 2026 0 6 "" nsv525498 15 79561102 79565753 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701630 S 2026 0 1 "" nsv1638 15 79588936 79627530 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7207 S 9 0 1 "" NA12156 nsv507793 15 79724727 79730727 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620590,nssv623196,nssv619153 M 4 3 0 "" NA10860,NA15510,NA18994 dgv761e1 15 79728575 80011124 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv605,essv17442 M 271 0 0 "" NA12043 dgv156n21 15 79754057 79769178 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv527151,nsv520902 M 2026 0 2 "" nsv519643 15 79763098 79765792 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv657317,nssv659528 M 2026 0 2 "" esv2751537 15 79763100 79844345 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6982297,essv6982298 M 771 1 0 "" BEC_414 essv23117 15 79788150 79874464 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12043 esv34339 15 79788669 79874464 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6978622,essv6978623,essv6986664,essv6990262 M 771 1 0 "" NA12043 nsv517309 15 79795368 79875169 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704690,nssv651672,nssv675388 M 2026 2 1 "" nsv817701 15 79802980 79875169 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417017 S 112 1 0 "" NA12043 nsv524176 15 79820230 79946286 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700057 S 2026 0 1 "" nsv523340 15 79944610 80052156 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699087 S 2026 1 0 "" nsv833067 15 80022035 80237540 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452046,nssv1452045 M 95 1 1 "" nsv1639 15 80056532 80089492 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4168 S 9 1 0 "" NA12878 esv2422504 15 80080119 80213455 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161251 S 181 1 0 "" ND04302 nsv457211 15 80149180 80183402 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534448 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00105 nsv528511 15 80178342 80191760 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705118 S 2026 0 1 "" dgv321n27 15 80241338 80360310 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv457212,nsv457213 M 1557 2 0 "" 1780854325_A,NINDS_115 nsv457214 15 80324409 80327229 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534451 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00476 nsv516603 15 80324409 80327229 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv669504,nssv660827,nssv662812 M 2026 0 3 "" nsv510669 15 80387821 80808313 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618929,nssv622697,nssv620086 M 4 0 3 "" NA10860,NA15510,NA18994 nsv9284 15 80431274 80476043 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26298,nssv24545,nssv21903,nssv22066,nssv19895,nssv20381 M 31 5 1 Samples from several populations that are part of the HapMap project. "" NA07048,NA10847,NA12872,NA18504,NA18552,NA18860 esv33165 15 80451465 80838926 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100324 S 51 0 1 "" 22300 nsv833068 15 80481136 80694711 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452047 S 95 1 0 "" nsv9285 15 80508242 80851248 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23655,nssv24657,nssv22156,nssv23036,nssv19840,nssv21933,nssv26315,nssv20441,nssv21482,nssv20471,nssv22126,nssv23712,nssv22694,nssv24631,nssv19925,nssv25874 M 31 5 9 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10847,NA11830,NA12155,NA12740,NA12802,NA12872,NA18504,NA18537,NA18552,NA18860,NA19132 essv3955 15 80676701 80772199 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18970 dgv762e1 15 80676701 80887174 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv16828,essv9322,essv5389,essv22867,essv15400 M 271 0 0 "" NA12760,NA18563,NA18853,NA19203,NA19205 dgv763e1 15 80676701 81024206 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv20311,essv13704,essv9156 M 271 0 0 "" NA12236,NA18860,NA19119 dgv764e1 15 80676701 81107580 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1871,essv16675,essv20786,essv5261,essv4785,essv12215,essv7588,essv19561,essv24676,essv6994,essv15809,essv14338,essv7227,essv15615,essv19277,essv6243,esv421,essv12851,essv12981,essv10823,essv16742,essv10171,essv23534,essv17923,essv18302,essv19993,essv23491,essv11179,essv10334,essv4546,essv423,essv3099,essv10917 M 271 0 0 "" NA06993,NA07034,NA07048,NA10838,NA10846,NA11829,NA12003,NA12146,NA12864,NA18506,NA18524,NA18545,NA18547,NA18612,NA18620,NA18624,NA18636,NA18859,NA18871,NA18872,NA18912,NA18952,NA18969,NA18976,NA19101,NA19120,NA19130,NA19142,NA19194,NA19209,NA19211,NA19223 nsv833069 15 80733755 80957049 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452048 S 95 0 1 "" nsv469699 15 80885963 81004768 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649632 M 265 0 0 Samples from several populations that are part of the HapMap project. "" nsv471686 15 80885964 81004768 CNV Gain+Loss Sharp et al 2005 15918152 BAC_aCGH,FISH Eichler Segmental Duplication BAC array nssv550158,nssv550156,nssv550157,nssv550155 M 48 2 2 "" NA10493,NA10969,NA11521,NA11523 nsv9286 15 80894767 80983078 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22186,nssv19955,nssv26332 M 31 2 1 Samples from several populations that are part of the HapMap project. "" NA10847,NA18552,NA18860 nsv833071 15 80920701 81107565 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452049 S 95 1 0 "" nsv9287 15 80982275 80983944 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19870,nssv22723,nssv21512,nssv24683,nssv23713,nssv23094 M 31 0 6 Samples from several populations that are part of the HapMap project. "" NA07029,NA12155,NA12740,NA12802,NA18504,NA18537 nsv1640 15 81071781 81106912 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1269 S 9 1 0 "" NA19240 esv34318 15 81080610 81250549 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6979095,essv6988101,essv6989066 M 771 0 1 "" NA12891 nsv817702 15 81096516 81254478 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416192 S 112 0 1 "" NA12891 esv33057 15 81111888 81114643 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100630 S 51 1 0 "" 21656 nsv94434 15 81140496 81140654 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv113012 M 24 "" nsv469557 15 81214817 81351633 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649668 M 265 0 0 Samples from several populations that are part of the HapMap project. "" nsv471687 15 81214818 81351633 CNV Gain Sharp et al 2005 15918152 BAC_aCGH,FISH Eichler Segmental Duplication BAC array nssv549241 S 48 1 0 "" NA10493 nsv9288 15 81276538 81293882 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25895 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19132 nsv509578 15 81341243 81371807 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619672 S 4 1 0 "" NA10860 nsv1641 15 81343492 81356434 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1270,nssv6645 M 9 2 0 "" NA12156,NA19240 nsv522673 15 81356715 81361118 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv706078 S 2026 0 1 "" nsv7269 15 81510680 81538145 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1271 S 9 0 0 "" NA19240 nsv94888 15 81636696 81636696 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv113466 M 24 "" nsv457216 15 81998554 82026934 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534452 S 1557 0 1 "" 1787431166_A nsv1642 15 82002172 82046860 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7208 S 9 0 1 "" NA12156 nsv833072 15 82048724 82205895 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452050,nssv1452051 M 95 2 0 "" nsv524815 15 82140127 82143780 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700809 S 2026 0 1 "" nsv833073 15 82149073 82355602 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452052 S 95 0 1 "" dgv765e1 15 82330480 82359162 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1069,essv22015 M 271 0 0 "" NA12815 nsv442707 15 82331742 82334554 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv9289 15 82332284 82335660 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23741,nssv20662,nssv22280,nssv21963,nssv20119,nssv23113,nssv21714,nssv23732,nssv22308,nssv24709,nssv22487,nssv22216,nssv21542 M 31 0 13 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA12155,NA18504,NA18552,NA18563,NA18564,NA18572,NA18853,NA18942,NA18975,NA19144,NA19173 nsv833074 15 82335004 82513395 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452053 S 95 1 0 "" nsv833075 15 82475717 82647284 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452054 S 95 1 0 "" nsv457220 15 82497201 82623936 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534455 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00208 dgv766e1 15 82506626 82688763 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv12803,essv5602,essv441 M 271 0 0 "" NA18529,NA18952,NA19120 dgv767e1 15 82506626 82904075 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv23561,essv4569,essv20103,essv9082,essv24657,essv15679,essv7582,essv7207,essv10144,essv16642,essv20762,essv1861,essv5250,essv14325,essv10274,essv19236,esv546,essv12966,essv9114,essv19546,essv10828,essv17739,essv18255,essv23512,essv15827,essv12269 M 271 0 0 "" NA06993,NA07034,NA07048,NA10838,NA10846,NA11829,NA12146,NA12864,NA12872,NA18506,NA18524,NA18545,NA18547,NA18624,NA18859,NA18860,NA18871,NA18912,NA18976,NA19101,NA19130,NA19132,NA19142,NA19194,NA19223 esv33338 15 82539653 82540264 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93737 S 51 1 0 "" 21972 nsv833076 15 82595460 82766552 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452055 S 95 0 1 "" nsv9290 15 82606549 82894318 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26076,nssv26349,nssv27578,nssv25916,nssv22615,nssv22246,nssv24802,nssv27570,nssv25422,nssv23122 M 31 3 7 Samples from several populations that are part of the HapMap project. "" NA12740,NA18502,NA18517,NA18552,NA18860,NA18980,NA19132,NA19221,NA19240 dgv768e1 15 82618970 82898038 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2554,essv205,essv3,essv18057 M 271 0 0 "" NA06993,NA18945,NA18974,NA18994 nsv518289 15 82623936 82914976 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695720 S 2026 0 1 "" nsv7270 15 82643252 82875046 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5573,nssv4169,nssv1272,nssv10066,nssv10937,nssv6646,nssv2120 M 9 0 0 "" NA12156,NA12878,NA15510,NA18555,NA18956,NA19129,NA19240 nsv833077 15 82649354 82766552 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452059,nssv1452058,nssv1452056,nssv1452057,nssv1452061,nssv1452060 M 95 1 5 "" nsv117 15 82690614 82745765 OTHER Inversion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv117 S 1 0 0 "" NA15510 nsv510877 15 82702563 82853914 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624349 S 4 0 0 "" NA18994 dgv769e1 15 82722673 82870925 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv20950,essv130 M 271 0 0 "" NA12801,NA18968 nsv524319 15 82749322 82914976 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700222 S 2026 0 1 "" essv1973 15 82887992 82898038 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18942 essv9505 15 82887992 82904075 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18521 nsv1643 15 82914935 82949260 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2941 S 9 1 0 "" NA18555 nsv515983 15 82989843 83001758 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv684350,nssv693631,nssv666098,nssv687932,nssv680700,nssv683185,nssv665582,nssv672238 M 2026 0 8 "" dgv770e1 15 83063933 83217534 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv5918,esv409 M 271 0 0 "" NA18550 esv33685 15 83076050 83081743 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97425 S 51 0 1 "" 21879 nsv517833 15 83081868 83129356 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695237 S 2026 1 0 "" nsv524050 15 83208568 83279733 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699914 S 2026 0 1 "" dgv322n27 15 83213459 83263320 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv457221,nsv457222 M 1557 2 0 "" HGDP00562,HGDP00564 nsv519285 15 83253824 83255658 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv681405,nssv691186,nssv655211 M 2026 0 3 "" nsv457223 15 83257350 83266877 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534458 S 1557 0 1 "" NINDS_136 nsv525868 15 83265502 83301233 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702068 S 2026 0 1 "" nsv94824 15 83272767 83272767 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv113402 M 24 "" nsv833078 15 83351618 83509068 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452062 S 95 0 1 "" nsv94588 15 83361512 83362122 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv113166 M 24 "" nsv1645 15 83373219 83392099 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7209 S 9 0 1 "" NA12156 nsv833079 15 83420410 83618546 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452063 S 95 1 0 "" nsv1646 15 83433416 83466824 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4170 S 9 1 0 "" NA12878 dgv771e1 15 83451942 83685716 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv16655,essv7542,essv10140,essv23502,essv14365,essv19502,esv102,essv13035,essv15659,essv22871,essv7152,essv9146 M 271 0 0 "" NA07034,NA12760,NA12864,NA18545,NA18547,NA18859,NA18860,NA18912,NA19130,NA19142,NA19194 nsv94721 15 83463717 83472287 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv113299 M 24 "" nsv94868 15 83513885 83513968 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv113446 M 24 "" nsv517561 15 83517217 83626571 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv689854,nssv676502,nssv658249,nssv672894,nssv656004,nssv674972,nssv652362,nssv660930,nssv692146,nssv668630,nssv662293,nssv678749 M 2026 0 12 "" nsv469530 15 83521147 83613140 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649639 M 265 0 3 Samples from several populations that are part of the HapMap project. "" nsv471690 15 83521148 83613140 CNV Gain+Loss Sharp et al 2005 15918152 BAC_aCGH,FISH Eichler Segmental Duplication BAC array nssv548874,nssv548876,nssv548872,nssv548875,nssv548873,nssv548870,nssv548868,nssv548869,nssv548871 M 48 1 8 "" JK1051,JK1061,NA10493,NA11523,NA15726,NA15733,NA16688,NA16689,NA17051 nsv817703 15 83522661 83529838 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416975 S 112 0 1 "" NA19137 nsv518064 15 83522661 83950163 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694197 S 2026 1 0 "" nsv9292 15 83526988 83582092 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22276,nssv26365 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA18552,NA18860 nsv509580 15 83555225 83639834 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623679,nssv619673,nssv621013 M 4 3 0 "" NA10860,NA15510,NA18994 nsv9293 15 83581731 83582958 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21636,nssv23768,nssv23740,nssv23150,nssv21572,nssv22782,nssv24735,nssv19900 M 31 0 8 Samples from several populations that are part of the HapMap project. "" NA07029,NA10863,NA11830,NA12155,NA12740,NA12802,NA18504,NA18537 esv2751538 15 83626571 83913433 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6987217,essv6987216,essv6988920,essv6985318,essv6985319 M 771 1 0 "" SPC_141 dgv323n27 15 83626571 83944508 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv457226,nsv457225 M 1557 2 0 "" 1782681216_A,1798860114_A nsv9294 15 83684729 83689741 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22645,nssv25937,nssv25477,nssv21666,nssv19930,nssv23178,nssv26095,nssv19985 M 31 0 8 Samples from several populations that are part of the HapMap project. "" NA10847,NA10863,NA12740,NA12802,NA18502,NA18517,NA18980,NA19132 nsv516068 15 83752450 83752722 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv677505,nssv665991,nssv680344,nssv690067,nssv667520,nssv678726,nssv660780,nssv680427,nssv659193 M 2026 0 9 "" nsv510670 15 83784587 83897649 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620087,nssv622698 M 4 0 2 "" NA15510,NA18994 nsv457228 15 83785187 83836777 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534461 S 1557 0 1 "" 1782681195_A nsv457229 15 83811349 83853674 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534462 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00199 nsv526173 15 83849793 83865972 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702434 S 2026 0 1 "" esv32946 15 83859025 83860176 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93885,essv94319,essv95417,essv92889,essv93630,essv96209,essv95936,essv93567,essv93279,essv94852,essv92646,essv97636,essv100570,essv96371 M 51 0 14 "" 21634,21808,21847,21939,21972,22007,22127,22128,22170,22231,22233,22278,22298,22371 nsv94598 15 83904395 83906823 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv113176 M 24 "" nsv525771 15 83923783 83924992 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701941 S 2026 0 1 "" nsv524939 15 83923783 83926308 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700953 S 2026 0 1 "" nsv516322 15 84089271 84141529 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv667566,nssv687400,nssv702498,nssv697636,nssv656778,nssv680701,nssv685203,nssv697845,nssv669553 M 2026 0 9 "" dgv772e1 15 84140970 84162590 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv16574,esv1159,essv12437 M 271 0 0 "" NA19152,NA19193 nsv442380 15 84142284 84151045 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv517029 15 84142286 84150824 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv678727,nssv686159,nssv683587,nssv684351,nssv653644,nssv665992,nssv659194,nssv673922,nssv681969,nssv666075,nssv660781,nssv680345,nssv684045,nssv677506,nssv680428,nssv674804,nssv682286,nssv670470,nssv689306,nssv684398 M 2026 0 20 "" nsv817704 15 84142286 84150824 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418509 S 112 0 1 "" NA19193 dgv773e1 15 84142636 84151512 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv14013,essv9492 M 271 0 0 "" NA19154,NA19222 nsv516178 15 84161149 84162823 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv693687,nssv660931,nssv690797,nssv679276,nssv672047,nssv659983,nssv666643,nssv687519 M 2026 0 8 "" esv33019 15 84168696 84172686 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100496 S 51 0 1 "" 22298 esv33026 15 84234580 84247009 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97519 S 51 0 1 "" 21616 nsv1647 15 84254895 84267820 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10067 S 9 1 0 "" NA18956 nsv524836 15 84263856 84284682 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700837 S 2026 0 1 "" nsv442381 15 84312709 84322841 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv519287 15 84312988 84317220 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv684251,nssv683919,nssv682826,nssv687848,nssv661778,nssv655212,nssv690180,nssv683707,nssv680290 M 2026 0 9 "" nsv94468 15 84325620 84328982 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv113046 M 24 "" nsv1648 15 84422529 84463812 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7210 S 9 0 1 "" NA12156 nsv519797 15 84429110 85582776 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697057 S 2026 1 0 "" nsv833080 15 84519269 84687942 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452066,nssv1452065,nssv1452064 M 95 3 0 "" nsv520512 15 84566382 84570270 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv671965,nssv681406 M 2026 0 2 "" nsv457231 15 84682665 84716093 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534464 S 1557 0 1 "" 1787431198_A nsv833082 15 84687961 84859560 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452067 S 95 0 1 "" dgv774e1 15 84946745 84954786 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv20751,esv1305 M 271 0 0 "" NA07357 nsv833083 15 85099630 85269701 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452068 S 95 1 0 "" nsv526937 15 85122061 85122132 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703305 S 2026 0 1 "" nsv528422 15 85122061 85128572 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705014 S 2026 0 1 "" nsv524278 15 85170232 85194981 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700177 S 2026 1 0 "" nsv507794 15 85171365 85177365 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620592,nssv617904,nssv619154,nssv623197 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv516208 15 85189572 85194981 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv679585,nssv666820,nssv662042 M 2026 0 3 "" nsv1649 15 85385581 85411002 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7211 S 9 0 1 "" NA12156 nsv1650 15 85473257 85478416 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1273 S 9 1 0 "" NA19240 nsv817705 15 85483631 85488179 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416882,nssv1416881 M 112 2 0 "" NA19238,NA19240 nsv1651 15 85489155 85502391 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1274 S 9 1 0 "" NA19240 nsv526463 15 85534529 85535623 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702766 S 2026 0 1 "" dgv111e55 15 85564053 85679607 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv2751539,esv2751540 M 771 0 2 "" BEC_400,SPC_179 dgv324n27 15 85589476 85664719 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv457234,nsv457232,nsv457233 M 1557 0 3 "" NINDS_186,NINDS_258,NINDS_260 nsv517389 15 85600928 85664719 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv686381,nssv656206,nssv666029,nssv652279,nssv653114,nssv666366,nssv671984,nssv671517,nssv664480,nssv679949,nssv683278,nssv659033,nssv681828,nssv669475,nssv651880,nssv692729,nssv685332,nssv657737,nssv677590,nssv666099,nssv669708,nssv660509,nssv658751,nssv661835 M 2026 0 24 "" dgv325n27 15 85631534 85633134 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv457235,nsv457236,nsv457237 M 1557 0 3 "" 1780854536_A,1782681495_A,HGDP01164 dgv326n27 15 85631534 85664719 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv457238,nsv457242,nsv457240,nsv457243,nsv457239 M 1557 0 5 "" 1780862040_A,1780862516_A,HGDP00886,HGDP01166,NINDS_70 nsv9295 15 85700660 85702573 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27586 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19221 dgv775e1 15 85706849 85711119 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv11316,essv9544,esv1101 M 271 0 0 "" NA18861,NA18863 nsv442382 15 85707205 85711226 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv515550 15 85707359 85708716 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv659529,nssv672895,nssv682397,nssv688906,nssv688928,nssv687882,nssv674718,nssv686179,nssv681504,nssv656970,nssv690396,nssv663885,nssv687865 M 2026 0 13 "" nsv524330 15 85744289 85761018 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700236 S 2026 0 1 "" nsv94797 15 85843967 85844037 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv113375 M 24 "" nsv833084 15 85951370 86126474 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452069 S 95 0 1 "" nsv524789 15 85976596 85986259 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700781 S 2026 0 1 "" nsv1652 15 86173804 86207395 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2942 S 9 1 0 "" NA18555 nsv94255 15 86253856 86260898 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv112833 M 24 "" nsv527970 15 86324401 86326955 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704482 S 2026 1 0 "" nsv833085 15 86709311 86865897 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452070,nssv1452071 M 95 1 1 "" nsv509581 15 86858448 86941959 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621015 S 4 1 0 "" NA15510 nsv525114 15 87198061 87199609 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701178 S 2026 0 1 "" nsv1653 15 87214644 87259576 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7212 S 9 0 1 "" NA12156 nsv1654 15 87268961 87313339 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4637 S 9 0 1 "" NA19129 nsv510407 15 87286072 87292072 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621428 S 4 0 1 "" NA15510 nsv1656 15 87333671 87360279 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4171 S 9 1 0 "" NA12878 nsv523275 15 87490968 87506732 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699009 S 2026 0 1 "" nsv507795 15 87521584 87527584 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620593,nssv619155,nssv617905 M 4 3 0 "" CHM,NA10860,NA15510 nsv833086 15 87619983 87781613 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452072 S 95 0 1 "" nsv1657 15 87631469 87652534 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7213 S 9 0 1 "" NA12156 nsv94979 15 87658361 87658361 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv113557 M 24 "" nsv94991 15 87690115 87696586 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv113569 M 24 "" nsv516532 15 87733799 87749940 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv659355,nssv688004,nssv669595,nssv668920 M 2026 0 4 "" nsv521543 15 87749940 87750214 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698159 S 2026 0 1 "" nsv457245 15 87808594 87861562 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534477 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00888 nsv1658 15 87872382 87906424 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7214 S 9 1 0 "" NA12156 nsv1659 15 87954771 87999867 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7215 S 9 0 1 "" NA12156 nsv521260 15 87971241 87975432 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv689895,nssv689420 M 2026 0 2 "" nsv1660 15 88005210 88039094 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2943 S 9 1 0 "" NA18555 nsv519689 15 88147865 88150562 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv684732,nssv677654,nssv657582 M 2026 0 3 "" nsv1661 15 88149017 88183948 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1275 S 9 1 0 "" NA19240 nsv442383 15 88306853 88311123 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv776e1 15 88366960 88610637 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv14606,essv10909,esv866,essv15268,essv11101 M 271 0 0 "" NA19093,NA19094,NA19209,NA19211 nsv94745 15 88378711 88382943 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv113323 M 24 "" dgv112e55 15 88423508 88593510 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv34436,esv34510,esv34677,esv34892 M 771 4 0 "" NA19093,NA19094,NA19209,NA19211 dgv777e1 15 88424056 88601412 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv12931,essv8410,essv7927,essv10609 M 271 0 0 "" NA19093,NA19094,NA19209,NA19211 nsv442384 15 88433614 88579397 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv817707 15 88448860 88585934 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418319,nssv1418320 M 112 2 0 "" NA19093,NA19094 esv33160 15 88464299 88468841 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93205 S 51 1 0 "" 22170 nsv94995 15 88489235 88496330 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv113573 M 24 "" nsv833087 15 88552911 88769961 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452073 S 95 0 1 "" essv11326 15 88589888 88610637 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19128 esv2751541 15 88589888 88801449 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6987218,essv6985320,essv6985321,essv6985322 M 771 1 0 "" SPC_141 nsv9296 15 88591119 88593523 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25988 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19132 nsv94314 15 88596293 88598424 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv112892 M 24 "" nsv94838 15 88600830 88600893 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv113416 M 24 "" nsv457246 15 88626437 88800132 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534478 S 1557 1 0 "" 1798860114_A nsv833088 15 88814205 88990039 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452074 S 95 0 1 "" esv33405 15 88870216 88870427 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98672 S 51 0 1 "" 21606 esv33377 15 88872958 88873027 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv95374,essv96023 M 51 2 0 "" 21872,22127 esv33061 15 88876164 88876302 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98819 S 51 0 1 "" 21606 nsv509582 15 88923058 89007405 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621016 S 4 1 0 "" NA15510 nsv94691 15 88974995 88975330 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv113269 M 24 "" nsv1662 15 88982742 89012664 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1277 S 9 1 0 "" NA19240 nsv94962 15 89065795 89066580 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv113540 M 24 "" nsv94584 15 89163536 89163676 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv113162 M 24 "" nsv833089 15 89204144 89307195 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452075 S 95 0 1 "" nsv515661 15 89211013 89326201 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv665011,nssv679616,nssv664281 M 2026 0 3 "" nsv833090 15 89255429 89442753 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452076,nssv1452078,nssv1452077 M 95 0 3 "" nsv833091 15 89340549 89400706 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452084,nssv1452090,nssv1452091,nssv1452079,nssv1452080,nssv1452081,nssv1452089,nssv1452082,nssv1452085,nssv1452088,nssv1452086,nssv1452087,nssv1452092,nssv1452083 M 95 0 14 "" nsv507796 15 89426958 89432958 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623198 S 4 1 0 "" NA18994 nsv1663 15 89610636 89655131 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4172 S 9 0 1 "" NA12878 dgv778e1 15 89632854 89841316 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv5356,esv84 M 271 0 0 "" NA18563 nsv833094 15 89632877 89841316 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452093 S 95 1 0 "" nsv524491 15 89653843 89656585 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700429 S 2026 0 1 "" nsv529031 15 89653843 89658955 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705742 S 2026 0 1 "" nsv9297 15 89719629 89722900 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22616,nssv26008 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA19007,NA19132 nsv9298 15 89781413 89789731 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23141,nssv22811 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA18537,NA19173 esv32951 15 89782898 89793176 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93721 S 51 0 1 "" 21972 nsv833095 15 89807797 89952180 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452094 S 95 0 1 "" nsv1664 15 89992630 90037412 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5574 S 9 0 1 "" NA19129 nsv1665 15 90088495 90120094 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4173 S 9 1 0 "" NA12878 nsv1667 15 90299789 90333837 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4174 S 9 1 0 "" NA12878 dgv779e1 15 90382555 90416250 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv11347,essv14911,esv981 M 271 0 0 "" NA19128,NA19129 nsv1668 15 90386348 90436995 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5575 S 9 0 1 "" NA19129 nsv118 15 90423352 90426194 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv118 S 1 1 0 "" NA15510 nsv1669 15 90423352 90426194 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10938 S 9 1 0 "" NA15510 nsv119 15 90445911 90449733 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv119 S 1 1 0 "" NA15510 nsv1670 15 90445911 90449733 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10939 S 9 1 0 "" NA15510 nsv120 15 90452957 90456908 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv120 S 1 1 0 "" NA15510 nsv524871 15 90491552 90505184 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700876 S 2026 0 1 "" nsv121 15 90526337 90527576 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv121 S 1 1 0 "" NA15510 nsv122 15 90531694 90532600 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv122 S 1 1 0 "" NA15510 nsv1671 15 90531694 90532600 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10940 S 9 1 0 "" NA15510 nsv123 15 90540757 90545134 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv123 S 1 1 0 "" NA15510 nsv125 15 90545761 90549975 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv125 S 1 1 0 "" NA15510 nsv126 15 90565670 90568645 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv126 S 1 1 0 "" NA15510 nsv127 15 90570601 90576001 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv127 S 1 1 0 "" NA15510 nsv1672 15 90570601 90576001 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10941 S 9 1 0 "" NA15510 nsv128 15 90579704 90582644 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv128 S 1 1 0 "" NA15510 nsv129 15 90585507 90587123 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv129 S 1 1 0 "" NA15510 nsv130 15 90589232 90592546 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv130 S 1 1 0 "" NA15510 nsv131 15 90603911 90607766 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv131 S 1 1 0 "" NA15510 nsv1673 15 90603911 90607766 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10942 S 9 1 0 "" NA15510 nsv132 15 90612102 90614314 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv132 S 1 1 0 "" NA15510 nsv519402 15 90814564 90816431 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696834 S 2026 1 0 "" esv2751542 15 90854685 90892819 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6986386,essv6983262 M 771 1 0 "" BEC_560 nsv457249 15 90917523 90934429 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534479 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00902 nsv1674 15 90982015 91015936 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7216 S 9 1 0 "" NA12156 nsv94664 15 91013454 91013508 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv113242 M 24 "" nsv94522 15 91107423 91117320 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv113100 M 24 "" nsv94812 15 91122250 91122250 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv113390 M 24 "" nsv1675 15 91169565 91204856 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4175 S 9 1 0 "" NA12878 nsv520601 15 91371727 91375823 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv682287,nssv672983 M 2026 0 2 "" dgv157n21 15 91371727 91403060 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv525266,nsv526532 M 2026 0 2 "" nsv523617 15 91371727 91411143 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699414 S 2026 0 1 "" nsv833096 15 91385746 91567261 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452095 S 95 0 1 "" nsv523171 15 91460705 91461811 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698883 S 2026 0 1 "" nsv527040 15 91461811 91463287 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703416 S 2026 0 1 "" nsv520003 15 91463200 91463287 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv660030,nssv663520 M 2026 0 2 "" dgv327n27 15 91535986 91565744 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv457253,nsv457251,nsv457255 M 1557 0 3 "" HGDP00955,HGDP00956,HGDP01220 nsv457254 15 91535986 91597282 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534483 S 1557 0 1 "" NINDS_219 nsv94504 15 91588772 91588825 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv113082 M 24 "" dgv780e1 15 91597772 91620597 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv19025,esv908 M 271 0 0 "" NA07034 nsv442385 15 91605927 91621304 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" essv11473 15 91612535 91620597 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18856 nsv817708 15 91614570 91620739 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416401,nssv1416402 M 112 2 0 "" NA18856,NA18857 nsv9299 15 91624747 91629401 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27594 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19221 nsv442387 15 91656315 91667141 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv515575 15 91660035 91666150 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv657772,nssv663943,nssv686834,nssv671707 M 2026 0 4 "" nsv817709 15 91660035 91666150 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416603,nssv1416680 M 112 0 2 "" NA19119,NA19172 nsv527966 15 91741190 91743460 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704477 S 2026 0 1 "" nsv457256 15 91751706 91768082 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534485 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01223 nsv520593 15 91773349 91779418 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697509 S 2026 0 1 "" dgv158n21 15 91805595 91810520 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv518394,nsv523392 M 2026 0 2 "" nsv520243 15 91906923 91915239 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697304 S 2026 1 0 "" dgv328n27 15 91937734 91963332 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv457259,nsv457258 M 1557 0 2 "" 1780854128_A,1780862577_A nsv515866 15 91937734 92035325 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv665080,nssv690587,nssv681057,nssv680238,nssv662962,nssv684458 M 2026 0 6 "" esv2751543 15 91954500 92087141 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6989525,essv6981837,essv6981836,essv6989265 M 771 0 1 "" BEC_492 nsv1676 15 92089313 92123835 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2944 S 9 1 0 "" NA18555 nsv457261 15 92157227 92285468 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534488 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00731 nsv457262 15 92417237 92442685 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534489 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00474 nsv457264 15 92500239 92528658 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534491 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00003 nsv833097 15 92507232 92695300 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452096 S 95 1 0 "" nsv1678 15 92514862 92548779 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4176 S 9 1 0 "" NA12878 nsv523623 15 92577934 92629470 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699420 S 2026 0 1 "" nsv516378 15 92596662 92601453 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv685042,nssv667915,nssv688793,nssv684399 M 2026 0 4 "" nsv94903 15 92601838 92602267 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv113481 M 24 "" nsv519193 15 92646402 92647763 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696676 S 2026 0 1 "" nsv520668 15 92703955 92709908 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv691571,nssv673746 M 2026 0 2 "" nsv520465 15 92853373 92878141 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv671669,nssv686809 M 2026 0 2 "" nsv521263 15 92915215 92917093 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697875 S 2026 0 1 "" nsv515710 15 92916997 92917093 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv679538,nssv693462,nssv680449,nssv660089,nssv688122,nssv664501,nssv661577,nssv677865 M 2026 0 8 "" nsv523616 15 92916997 92919269 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699412 S 2026 0 1 "" dgv781e1 15 93267980 93447142 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv116,essv4491 M 271 0 0 "" NA18552 nsv833098 15 93269408 93434353 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452097 S 95 1 0 "" nsv518306 15 93312841 93314700 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695738 S 2026 0 1 "" esv33035 15 93380771 93386006 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101754 S 51 0 1 "" 21909 nsv457265 15 93511754 93572828 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534492 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01307 nsv510671 15 93538447 93577373 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622699 S 4 0 1 "" NA18994 nsv833099 15 93556151 93725630 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452098 S 95 0 1 "" nsv528082 15 93586200 93590806 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704618 S 2026 0 1 "" nsv521930 15 93635082 93643881 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694699 S 2026 0 1 "" nsv833100 15 93697383 93853318 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452099 S 95 1 0 "" nsv1679 15 93724029 93756124 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6647 S 9 1 0 "" NA12156 esv33663 15 93845138 93846566 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98261,essv95046 M 51 0 2 "" 21772,22231 nsv833101 15 93862988 94037985 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452100 S 95 1 0 "" nsv833102 15 94030218 94218219 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452101 S 95 1 0 "" nsv457266 15 94064986 94150930 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534493 S 1557 0 1 "" 1782681093_A nsv1680 15 94081357 94112224 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5576 S 9 1 0 "" NA19129 nsv517693 15 94144839 94146079 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv683467,nssv656610,nssv652862 M 2026 0 3 "" dgv782e1 15 94219335 94439704 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv23438,esv72 M 271 0 0 "" NA10854 nsv9300 15 94382013 94384813 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26410 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18860 nsv515711 15 94409963 94410825 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv659085,nssv672859,nssv682462,nssv688138,nssv682058,nssv660891,nssv664502,nssv656073,nssv660101,nssv672416 M 2026 0 10 "" nsv510408 15 94560525 94566525 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621429,nssv624172 M 4 0 2 "" NA15510,NA18994 nsv94578 15 94572729 94572779 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv113156 M 24 "" nsv1681 15 94637142 94649388 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7217 S 9 0 1 "" NA12156 nsv833103 15 94793749 94982390 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452102 S 95 1 0 "" nsv1682 15 94804089 94849215 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7218 S 9 0 1 "" NA12156 nsv94565 15 94841826 94842363 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv113143 M 24 "" nsv523954 15 94884928 94886435 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699803 S 2026 0 1 "" nsv95009 15 94885282 94885282 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv113587 M 24 "" nsv833105 15 94938373 95090825 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452103,nssv1452104,nssv1452105,nssv1452109,nssv1452106,nssv1452107,nssv1452108 M 95 7 0 "" nsv94521 15 95063973 95064036 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv113099 M 24 "" nsv522924 15 95109592 95134814 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698585 S 2026 1 0 "" dgv783e1 15 95508704 95833748 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv860,essv6581 M 271 0 0 "" NA18621 nsv528888 15 95560939 95583434 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705571 S 2026 0 1 "" nsv516857 15 95583434 95584661 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv654473,nssv691187 M 2026 2 0 "" nsv437175 15 95607185 95640259 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467056 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA07348 nsv437174 15 95607185 95730163 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467055 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA07029 nsv526813 15 95609736 95632771 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703167 S 2026 0 1 "" nsv9301 15 95609763 95654654 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20501,nssv22310,nssv21602,nssv26114 M 31 2 2 Samples from several populations that are part of the HapMap project. "" NA07029,NA12872,NA18502,NA18853 dgv329n27 15 95616714 95632771 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv457269,nsv457268,nsv457270,nsv457267 M 1557 0 4 "" 1780854533_A,HGDP00146,HGDP00169,NINDS_13 nsv817710 15 95616714 95632771 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418027,nssv1418107,nssv1417071,nssv1415915,nssv1418106,nssv1417070,nssv1418028 M 112 0 7 "" NA07000,NA07029,NA07345,NA07348,NA10859,NA11882,NA11994 nsv517390 15 95616714 95660482 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv655839,nssv689753,nssv682417,nssv676548,nssv693133,nssv694773,nssv654622,nssv651881,nssv683975,nssv660990,nssv681158,nssv684543,nssv677469,nssv679378,nssv662985,nssv691376,nssv670346,nssv682840,nssv675464,nssv690548,nssv661535,nssv657237,nssv665763,nssv677847,nssv656039,nssv668900,nssv674338,nssv661980,nssv692513,nssv690126 M 2026 0 30 "" nsv442388 15 95618796 95633187 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" essv6081 15 95654446 95716640 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18621 dgv330n27 15 95711357 95876724 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv457272,nsv457271 M 1557 2 0 "" HGDP00684,HGDP00686 nsv518083 15 95807506 95837235 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695496 S 2026 0 1 "" nsv528742 15 95837235 95839609 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705400 S 2026 0 1 "" nsv94265 15 95846987 95852557 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv112843 M 24 "" dgv331n27 15 95881039 95943653 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv457275,nsv457273 M 1557 0 2 "" HGDP00684,HGDP00686 nsv9303 15 95898147 95903274 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26133 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18502 nsv524692 15 95949078 95952283 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700667 S 2026 0 1 "" nsv457276 15 96010241 96049527 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534503 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00956 nsv519913 15 96097417 96097480 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv659450,nssv661927,nssv678320 M 2026 3 0 "" nsv525666 15 96097417 96115132 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701822 S 2026 1 0 "" nsv1683 15 96101678 96136911 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4177 S 9 1 0 "" NA12878 nsv515565 15 96146080 96147669 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv663922,nssv657840,nssv665583 M 2026 0 3 "" nsv457277 15 96149813 96170785 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534504 S 1557 0 1 "" 1780854341_A nsv524601 15 96175691 96178634 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700562 S 2026 0 1 "" nsv516027 15 96600345 96601419 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv665799,nssv676985,nssv659833 M 2026 0 3 "" nsv94261 15 96659850 96661330 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv112839 M 24 "" nsv510409 15 96668623 96674623 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621430 S 4 0 1 "" NA15510 nsv1684 15 96711831 96736162 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7219 S 9 0 1 "" NA12156 nsv94782 15 96717595 96718160 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv113360 M 24 "" nsv1685 15 96857931 96891920 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1278 S 9 1 0 "" NA19240 nsv520313 15 96929526 96936134 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697342 S 2026 1 0 "" nsv517927 15 96930773 96950172 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695339 S 2026 1 0 "" nsv519364 15 96931778 96936134 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696812 S 2026 1 0 "" esv32729 15 97271356 97271921 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98237,essv97886,essv95533,essv99682,essv97722 M 51 5 0 "" 21772,21837,21847,22217,22278 esv33604 15 97271553 97272241 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97127 S 51 1 0 "" 22075 nsv526399 15 97305604 97307458 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702698 S 2026 0 1 "" nsv509583 15 97330638 97468302 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623680 S 4 1 0 "" NA18994 nsv1686 15 97438608 97471192 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4178 S 9 1 0 "" NA12878 nsv516288 15 97672532 97674372 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv667343,nssv662043,nssv691474,nssv683615 M 2026 0 4 "" nsv519800 15 97768295 97804632 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697058 S 2026 0 1 "" nsv519319 15 97790184 97809029 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv692748,nssv655400 M 2026 0 2 "" nsv516613 15 97819991 97821703 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv673337,nssv669554 M 2026 2 0 "" nsv457278 15 97819991 97832702 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534505 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01234 nsv509584 15 97821706 97893835 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621017 S 4 1 0 "" NA15510 nsv94715 15 98081543 98082044 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv113293 M 24 "" dgv784e1 15 98091816 98574562 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv9638,esv626 M 271 0 0 "" NA19141 nsv507797 15 98143176 98149176 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623199,nssv620594 M 4 2 0 "" NA15510,NA18994 nsv522419 15 98144590 98441228 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705772 S 2026 0 1 "" dgv332n27 15 98147574 98416756 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv457281,nsv457279 M 1557 2 0 "" HGDP00986,HGDP01094 dgv333n27 15 98147574 98582661 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv457282,nsv457280 M 1557 2 0 "" HGDP00684,HGDP00686 nsv522834 15 98174958 98416756 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698485 S 2026 1 0 "" esv34620 15 98175492 98409515 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6985427,essv6985426,essv6980891,essv6980892,essv6980893 M 771 1 0 "" NA19141 essv12016 15 98175492 98422157 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19141 nsv817711 15 98177859 98414814 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416172 S 112 1 0 "" NA19141 nsv522360 15 98202923 98316888 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695141 S 2026 0 1 "" nsv524759 15 98223699 98237023 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700750 S 2026 0 1 "" nsv1687 15 98231041 98243453 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6649 S 9 0 1 "" NA12156 esv33145 15 98231984 98242507 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101577,essv98755,essv97529,essv101239,essv93819,essv100824,essv98143,essv94800,essv94120,essv96953,essv95691,essv95426,essv95345,essv97311,essv95780,essv99117,essv96621,essv98567,essv99675,essv100118,essv100464,essv99388,essv96340 M 51 0 23 "" 21603,21606,21616,21618,21634,21656,21772,21791,21802,21817,21841,21847,21872,21879,21911,21938,22011,22085,22217,22286,22298,22335,22371 nsv9304 15 98233842 98242083 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22340,nssv20531,nssv20015,nssv24827,nssv24761,nssv27602,nssv26028,nssv25500,nssv19960,nssv22675,nssv20149,nssv23206,nssv23795,nssv20692,nssv21744,nssv21696,nssv26152,nssv22840,nssv23759,nssv26425,nssv23169 M 31 19 2 Samples from several populations that are part of the HapMap project. "" NA10847,NA10863,NA12155,NA12740,NA12802,NA12872,NA18502,NA18504,NA18517,NA18537,NA18572,NA18853,NA18860,NA18942,NA18975,NA18980,NA19132,NA19144,NA19173,NA19221,NA19240 nsv529040 15 98360917 98377291 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705753 S 2026 0 1 "" nsv833106 15 98388103 98574487 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452110 S 95 1 0 "" nsv528540 15 98459951 98472830 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705152 S 2026 0 1 "" nsv1689 15 98461005 98478994 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7220 S 9 0 1 "" NA12156 nsv507798 15 98464588 98470588 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623200 S 4 1 0 "" NA18994 esv32990 15 98533636 98552812 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99938 S 51 1 0 "" 22086 nsv457284 15 98559551 98953582 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534510 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00064 nsv9305 15 98569684 98572715 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24786,nssv25523 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA18504,NA18517 nsv457286 15 98622005 98633466 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534512 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00911 nsv521725 15 98633466 98639099 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694485 S 2026 0 1 "" nsv457287 15 98657417 98770934 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534513 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00692 nsv523179 15 98820261 98820644 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698892 S 2026 0 1 "" nsv833107 15 98832609 99008349 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452112,nssv1452111 M 95 2 0 "" nsv94807 15 98869417 98869855 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv113385 M 24 "" nsv1690 15 98872838 98922862 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7221,nssv4180 M 9 0 2 "" NA12156,NA12878 nsv523884 15 98893021 98938486 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699726 S 2026 0 1 "" nsv523892 15 98920035 98925912 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699735 S 2026 0 1 "" nsv94263 15 98969226 98969547 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv112841 M 24 "" nsv94959 15 98978282 98978373 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv113537 M 24 "" nsv516521 15 99012701 99017807 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv668845,nssv690815,nssv685838 M 2026 0 3 "" nsv94678 15 99018007 99018060 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv113256 M 24 "" nsv528937 15 99047307 99121689 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705628 S 2026 1 0 "" nsv833108 15 99050206 99226308 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452113 S 95 1 0 "" nsv94405 15 99064439 99064516 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv112983 M 24 "" nsv469824 15 99117323 99291851 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649845 M 265 0 3 Samples from several populations that are part of the HapMap project. "" nsv9306 15 99158805 99162779 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22869 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18537 nsv94580 15 99159014 99159896 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv113158 M 24 "" nsv457288 15 99242258 99282099 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534514 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01012 nsv94665 15 99270605 99270913 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv113243 M 24 "" nsv833109 15 99290979 99484121 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452114 S 95 1 0 "" nsv516426 15 99297498 99315444 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv692347,nssv702318,nssv656567,nssv668291 M 2026 0 4 "" dgv785e1 15 99298613 99478425 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv206,essv21116 M 271 0 0 "" NA12815 nsv95032 15 99320522 99320522 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv113610 M 24 "" esv34275 15 99335000 99840279 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6986771,essv6979017,essv6979018,essv6979019,essv6979020,essv6990316,essv6986772 M 771 1 0 "" NA12815 esv33120 15 99355030 99357509 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98677 S 51 0 1 "" 21606 esv33725 15 99370521 99413484 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99958 S 51 1 0 "" 22086 nsv94609 15 99410092 99410159 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv113187 M 24 "" nsv9307 15 99453160 99456939 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26440,nssv25546,nssv26048,nssv24811 M 31 4 0 Samples from several populations that are part of the HapMap project. "" NA18504,NA18517,NA18860,NA19132 nsv94353 15 99458653 99458653 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv112931 M 24 "" nsv9308 15 99464839 99472536 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26454 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18860 nsv1691 15 99509769 99544963 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1279 S 9 1 0 "" NA19240 nsv517593 15 99512552 99513774 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700813,nssv660892,nssv658876,nssv659963,nssv652460 M 2026 0 5 "" nsv833110 15 99536874 99695116 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452116,nssv1452115 M 95 1 1 "" dgv786e1 15 99537666 99872978 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv775,essv22008 M 271 0 0 "" NA12815 dgv787e1 15 99550339 99734009 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv15811,essv18162,essv24253,essv7306,essv16891,essv9985,essv7169,essv24774,essv24695,essv14968,essv16797,essv18266,essv7596,essv2019,essv362 M 271 0 0 "" NA10846,NA10856,NA10860,NA11829,NA12057,NA18545,NA18547,NA18570,NA18870,NA18872,NA18949,NA18971,NA19099,NA19205,NA19223 nsv9309 15 99570510 99576884 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21804 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18975 nsv457290 15 99658269 99682119 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534515 S 1557 0 1 "" 1780854437_A nsv9310 15 99664041 99668214 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27610,nssv23822,nssv26201 M 31 3 0 Samples from several populations that are part of the HapMap project. "" NA12155,NA18502,NA19221 nsv469741 15 99675228 99834481 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649762 M 265 0 0 Samples from several populations that are part of the HapMap project. "" nsv94947 15 99692125 99692223 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv113525 M 24 "" esv2422359 15 99704914 99951643 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161509 S 181 1 0 "" ND04845 essv21162 15 99707205 99872978 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12815 nsv457291 15 99745400 99948745 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534516 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00654 nsv523415 15 99765735 99964634 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699167 S 2026 1 0 "" nsv9311 15 99803466 99808360 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24852,nssv27648,nssv23767 M 31 3 0 Samples from several populations that are part of the HapMap project. "" NA11830,NA19221,NA19240 nsv457293 15 99852790 100091023 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534517 S 1557 1 0 "" 1780862225_A dgv113e55 15 99853900 100210760 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv2751545,esv2751544 M 771 2 0 "" BEC_594,SPC_100 nsv521907 15 99853919 99968896 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694109 S 2026 1 0 "" nsv518735 15 99857924 99858141 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696184 S 2026 0 1 "" nsv528110 15 99858141 99858195 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704652 S 2026 0 1 "" nsv509585 15 99891839 99913033 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619674,nssv621018,nssv618112 M 4 3 0 "" CHM,NA10860,NA15510 nsv1692 15 99895728 99906112 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5577,nssv4181 M 9 2 0 "" NA12878,NA19129 nsv527365 15 99914018 99922217 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703796 S 2026 0 1 "" nsv457298 15 99915149 99948745 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534519 S 1557 0 1 "" NINDS_142 nsv525077 15 99927965 99933084 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701132 S 2026 0 1 "" nsv520327 15 99948745 99960170 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv690099,nssv662925 M 2026 0 2 "" nsv528761 15 99975177 100066701 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705423 S 2026 1 0 "" nsv523315 15 100021401 100066701 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699057 S 2026 1 0 "" nsv1693 15 100038691 100071268 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2122 S 9 1 0 "" NA18555 nsv521896 15 100065387 100091023 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694108 S 2026 1 0 "" dgv788e1 15 100089153 100248597 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv423,essv17824 M 271 0 0 "" NA10831 nsv9312 15 100090390 100126280 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21632,nssv20179,nssv25569,nssv23197,nssv19990,nssv22338,nssv22646,nssv22704,nssv26468,nssv24836,nssv21993,nssv25507,nssv23786,nssv22370,nssv24877,nssv25484,nssv23794,nssv21726,nssv21834,nssv22444,nssv22306,nssv20722,nssv26220,nssv23234,nssv22336,nssv27656,nssv22517,nssv26067,nssv23849,nssv20045,nssv22898 M 31 28 1 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10847,NA10863,NA11830,NA12155,NA12740,NA12802,NA18502,NA18504,NA18517,NA18537,NA18552,NA18563,NA18564,NA18572,NA18853,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19144,NA19173,NA19221,NA19240 nsv509586 15 100094559 100142932 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621019,nssv618113,nssv623681,nssv619675 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv469708 15 100094758 100248597 CNV Gain Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649729 M 265 3 0 Samples from several populations that are part of the HapMap project. "" nsv1694 15 100105359 100128725 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1280,nssv10943,nssv10070,nssv6650,nssv2123 M 9 5 0 "" NA12156,NA15510,NA18555,NA18956,NA19240 nsv133 15 100112732 100117754 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv133 S 1 1 0 "" NA15510 nsv94810 15 100121958 100122210 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv113388 M 24 "" esv2751291 15 100122652 100211000 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6981760,essv6981761 M 771 1 0 "" BEC_335 nsv469527 15 100141542 100240311 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649620 M 265 0 0 Samples from several populations that are part of the HapMap project. "" nsv524612 15 100144160 100184372 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700573 S 2026 0 1 "" nsv519940 15 100146047 100184372 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv680124,nssv659573 M 2026 2 0 "" nsv9314 15 100176426 100222192 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26482,nssv22474,nssv26086 M 31 1 2 Samples from several populations that are part of the HapMap project. "" NA10839,NA18860,NA19132 nsv517410 15 100198883 100215583 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv661901,nssv651937,nssv688763 M 2026 0 3 "" nsv9315 15 100217384 100338915 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21786,nssv26496,nssv26105,nssv24932,nssv20209,nssv22504,nssv20020,nssv23876,nssv25530,nssv22366,nssv23225,nssv21864,nssv24861,nssv21662,nssv24916,nssv22400,nssv23813,nssv20105,nssv27664,nssv25592 M 31 15 4 Samples from several populations that are part of the HapMap project. "" NA07029,NA10839,NA10847,NA10863,NA12155,NA12802,NA18504,NA18517,NA18552,NA18572,NA18853,NA18860,NA18972,NA18975,NA19132,NA19144,NA19173,NA19221,NA19240 nsv471523 15 100218756 100336307 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv547903,nssv547901,nssv547902 M 3 "" nsv1695 15 100317256 100330545 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4182 S 9 1 0 "" NA12878 nsv9316 16 1 22774 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26510,nssv25615,nssv21894,nssv23262 M 31 2 2 Samples from several populations that are part of the HapMap project. "" NA12740,NA18517,NA18860,NA18975 esv2422427 16 1 2713166 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161408 S 181 1 0 "" ND01684 dgv789e1 16 21052 133600 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv24685,essv24282,essv4758,essv11205,essv10149,essv9057,essv11185,essv15748,essv11953,essv9422,essv11671,esv480,essv14317,essv14727,essv12276,essv10670,essv8172,essv16832,essv9369,essv16017,essv10268 M 271 0 0 "" NA10856,NA11829,NA18501,NA18502,NA18506,NA18620,NA18853,NA18855,NA19101,NA19130,NA19131,NA19132,NA19154,NA19159,NA19194,NA19204,NA19205,NA19206,NA19208,NA19211 nsv522688 16 37354 45444 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv706098 S 2026 0 1 "" nsv518291 16 37354 244515 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695722 S 2026 0 1 "" esv32706 16 69409 85537 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98863,essv99858 M 51 0 2 "" 21606,22086 nsv9317 16 70368 79960 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26524 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18860 nsv1697 16 81117 83756 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10071 S 9 1 0 "" NA18956 nsv9318 16 131416 138537 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21692 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA07029 nsv1698 16 159147 185217 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4639 S 9 0 1 "" NA19129 nsv433295 16 161986 165653 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463176 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA19240 nsv433296 16 163618 167402 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463177 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA19129 nsv519528 16 165653 175490 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv656701,nssv676739 M 2026 0 2 "" dgv32n68 16 235507 466227 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH nsv833112,nsv833111 M 95 0 21 "" dgv790e1 16 266993 1111069 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv22678,esv62 M 271 0 0 "" NA12752 nsv515838 16 299954 302639 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv664978,nssv675930 M 2026 0 2 "" nsv9319 16 320390 326361 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26538 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18860 nsv517471 16 354931 372752 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv652116,nssv688023,nssv656779,nssv677727,nssv669579,nssv676851,nssv692244,nssv656947,nssv656881,nssv692915,nssv660431,nssv657136,nssv689453,nssv675522,nssv681829,nssv679775,nssv674339 M 2026 0 17 "" esv33562 16 369121 373249 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98391 S 51 0 1 "" 22352 nsv457303 16 373624 435663 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534520 S 1557 0 1 "" 1780862415_A nsv9320 16 417246 422557 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26124,nssv22460 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18853,NA19132 nsv521610 16 420097 435539 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698227 S 2026 1 0 "" nsv528354 16 441363 595687 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704939 S 2026 0 1 "" nsv526903 16 441363 800674 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703263 S 2026 0 1 "" nsv103435 16 442876 443195 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv122013 M 24 "" nsv1700 16 447844 466641 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4183 S 9 1 0 "" NA12878 nsv1701 16 475469 512734 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1283,nssv10072 M 9 2 0 "" NA18956,NA19240 nsv833113 16 496514 618161 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452145,nssv1452139,nssv1452138,nssv1452143,nssv1452144,nssv1452142,nssv1452140,nssv1452146,nssv1452141 M 95 0 9 "" nsv833114 16 496514 649093 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452151,nssv1452147,nssv1452150,nssv1452149,nssv1452148 M 95 1 4 "" nsv103268 16 540121 540190 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv121846 M 24 "" nsv457304 16 544555 601143 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534521 S 1557 1 0 "" NINDS_149 dgv334n27 16 595687 660987 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv457309,nsv457308 M 1557 0 2 "" HGDP00619,NINDS_119 nsv516590 16 595687 738490 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv680836,nssv689357,nssv669427,nssv687635,nssv662294,nssv675696,nssv678750,nssv683186,nssv686676,nssv672827 M 2026 0 10 "" nsv9321 16 628150 794329 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21816,nssv25638,nssv22733,nssv22023,nssv27672,nssv23290,nssv21722 M 31 6 1 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10863,NA12740,NA18517,NA18980,NA19221 nsv457310 16 641657 671726 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534524 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00747 nsv103377 16 655363 655412 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv121955 M 24 "" nsv482180 16 658134 664171 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558541 S 1 1 0 "" KB1 nsv482181 16 670116 672768 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558542 S 1 1 0 "" KB1 nsv482182 16 671668 674440 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558543 S 1 1 0 "" KB1 nsv457311 16 671726 751747 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534525 S 1557 0 1 "" 1780862416_A nsv482183 16 674703 680401 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558544 S 1 1 0 "" KB1 esv33054 16 695766 696426 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101585,essv95077,essv94304,essv97837,essv101632,essv94587,essv93419,essv99594,essv95050,essv99211,essv100470,essv96269 M 51 5 7 "" 21603,21721,21808,21837,21909,21932,22128,22217,22231,22275,22298,22371 nsv1702 16 741089 774289 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1285 S 9 1 0 "" NA19240 nsv457312 16 750040 787744 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534526 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00602 nsv517488 16 750040 800674 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv652170,nssv676853 M 2026 0 2 "" nsv817712 16 764099 800674 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417304 S 112 0 1 "" NA18608 nsv482184 16 788042 790734 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558545 S 1 1 0 "" KB1 dgv791e1 16 804894 1111069 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv19505,essv18726,essv22878,essv4797,essv19991,essv5295,essv1598,essv3344,essv2054,essv2880,essv6987,essv2687 M 271 0 0 "" NA07048,NA12760,NA12864,NA12874,NA18612,NA18620,NA18624,NA18942,NA18945,NA18949,NA18953,NA18967 nsv9322 16 806062 809072 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26239 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18502 nsv457315 16 818325 1192442 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534527 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00860 nsv9323 16 822150 825098 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22534 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA10839 nsv1703 16 822785 824518 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5578 S 9 1 0 "" NA19129 nsv1704 16 826424 857932 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5579,nssv1286,nssv9961,nssv4184,nssv6652,nssv2126 M 9 6 0 "" NA12156,NA12878,NA18507,NA18555,NA19129,NA19240 nsv103363 16 829941 829941 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv121941 M 24 "" nsv103236 16 829953 829953 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv121814 M 24 "" nsv524198 16 832019 842323 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700082 S 2026 0 1 "" nsv9326 16 846662 857236 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26582,nssv23253,nssv24941 M 31 0 3 Samples from several populations that are part of the HapMap project. "" NA18504,NA18860,NA19173 nsv457316 16 874181 923164 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534528 S 1557 0 1 "" 1780862388_A nsv1705 16 880582 913386 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7222,nssv4185 M 9 2 0 "" NA12156,NA12878 nsv523227 16 883362 916555 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698950 S 2026 1 0 "" nsv103501 16 884015 884299 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv122079 M 24 "" nsv103465 16 893618 893618 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv122043 M 24 "" nsv103751 16 893701 893793 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv122329 M 24 "" nsv103466 16 893868 894004 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv122044 M 24 "" nsv103789 16 908786 908786 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv122367 M 24 "" nsv9327 16 909128 910800 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21846 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA10863 nsv457317 16 919007 935895 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534529 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00864 dgv792e1 16 919651 1111069 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv17564,essv24043,essv1856,essv18222,essv1498,essv22217,essv15221,essv17752,essv20222,essv24280,essv23418,essv17602,essv21720,essv7363,essv4459,essv17468,essv12399,essv19454,essv439,essv9888,essv6907,essv4595,essv2446,essv2518,essv17043,essv21177,essv119,essv19233,essv5394,essv16329,essv23075,essv22513,essv24860,essv11634,essv19917,essv4188,essv24967,essv14072,essv15320,essv7767,essv21147,essv12755,essv2343,essv21320,essv20594,essv21414,essv1129,essv18652,essv1461,essv4000,essv354 M 271 0 0 "" NA07000,NA07056,NA10831,NA10838,NA10839,NA10854,NA10856,NA10859,NA11830,NA11840,NA11882,NA12043,NA12044,NA12057,NA12144,NA12234,NA12248,NA12717,NA12753,NA12762,NA12812,NA12813,NA12815,NA12878,NA18524,NA18526,NA18542,NA18552,NA18563,NA18570,NA18605,NA18861,NA18862,NA18914,NA18940,NA18944,NA18952,NA18964,NA18968,NA18970,NA18971,NA18976,NA18980,NA18999,NA19003,NA19094,NA19145,NA19154,NA19172,NA19193,NA19238 nsv833116 16 923071 1111069 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452152,nssv1452153 M 95 0 2 "" nsv1706 16 924545 948579 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1287,nssv5580 M 9 2 0 "" NA19129,NA19240 nsv103556 16 945278 945423 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv122134 M 24 "" nsv9328 16 945660 952864 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22490,nssv23930,nssv20782,nssv20050,nssv23903,nssv25553,nssv26143,nssv22676,nssv22792,nssv20135,nssv22564 M 31 4 7 Samples from several populations that are part of the HapMap project. "" NA10839,NA10847,NA12155,NA12802,NA18853,NA18942,NA18972,NA18980,NA19007,NA19132 esv33870 16 946346 947315 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv95102,essv101325,essv92680,essv96242,essv95996,essv93496,essv99735,essv99252,essv100526 M 51 0 9 "" 21721,21805,21944,22007,22127,22128,22217,22275,22298 nsv457319 16 956058 987730 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534531 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01271 nsv457320 16 990878 1032102 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534532 S 1557 0 1 "" 1780854441_A nsv1707 16 997495 1027569 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1288,nssv6653,nssv4186 M 9 3 0 "" NA12156,NA12878,NA19240 nsv457321 16 1010148 1043096 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534533 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01079 nsv103539 16 1015454 1015525 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv122117 M 24 "" nsv457322 16 1028798 1050645 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534534 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00715 nsv457323 16 1050645 1099732 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534535 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01223 nsv523609 16 1054259 1066544 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699403 S 2026 0 1 "" nsv9329 16 1064465 1066916 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22368 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18564 nsv9330 16 1099252 1130614 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22705 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19007 nsv457326 16 1138939 1210163 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534536 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00656 nsv7274 16 1184372 1281102 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9520,nssv6654,nssv10074,nssv10073,nssv4188,nssv9310,nssv5581,nssv4187,nssv1289,nssv2128,nssv6655,nssv2127,nssv1290 M 9 0 0 "" NA12156,NA12878,NA18507,NA18517,NA18555,NA18956,NA19129,NA19240 nsv833117 16 1207598 1308869 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452170,nssv1452169,nssv1452163,nssv1452165,nssv1452166,nssv1452161,nssv1452159,nssv1452162,nssv1452173,nssv1452167,nssv1452160,nssv1452168,nssv1452164,nssv1452154,nssv1452172,nssv1452157,nssv1452156,nssv1452158,nssv1452171,nssv1452155 M 95 0 20 "" nsv1708 16 1218094 1253590 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5582 S 9 0 1 "" NA19129 nsv103563 16 1221187 1221187 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv122141 M 24 "" nsv523308 16 1237146 1247677 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699048 S 2026 0 1 "" nsv103222 16 1239048 1246686 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv121800 M 24 "" nsv515770 16 1247677 1289930 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv679993,nssv680881,nssv673963,nssv664730,nssv689261,nssv666944 M 2026 0 6 "" nsv457328 16 1251334 1289930 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534537 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01418 nsv442389 16 1260595 1289926 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv103725 16 1307137 1311765 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv122303 M 24 "" nsv457331 16 1391520 1439378 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534540 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00579 nsv817713 16 1416466 1450568 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417306 S 112 0 1 "" NA18608 nsv525102 16 1455163 1457729 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701161 S 2026 0 1 "" nsv457332 16 1472838 1500112 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534541 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00546 nsv833118 16 1540718 1701583 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452175,nssv1452174 M 95 0 2 "" nsv518641 16 1635777 1825633 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696091 S 2026 0 1 "" nsv457335 16 1719696 1779024 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534542 S 1557 0 1 "" 1780854288_A nsv517196 16 1719696 1834962 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv663797,nssv675432,nssv661836,nssv657135,nssv664381,nssv656208,nssv657714,nssv684568,nssv684046,nssv691450,nssv668951,nssv665265,nssv679379,nssv697764,nssv683074,nssv653697,nssv683888,nssv705572,nssv686762,nssv691978,nssv659498,nssv651814,nssv684352,nssv677941,nssv666751,nssv661603,nssv655361,nssv674874,nssv702662,nssv662076,nssv661536,nssv674587,nssv675307,nssv657000,nssv684524,nssv671048,nssv671049,nssv694600,nssv699767,nssv662404,nssv671518 M 2026 13 28 "" nsv457336 16 1742233 1781034 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534543 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00518 nsv482185 16 1780422 1783710 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558546 S 1 1 0 "" KB1 nsv457337 16 1803521 1845007 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534544 S 1557 0 1 "" 1782681169_A dgv335n27 16 1807041 1887017 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv457338,nsv457339 M 1557 2 0 "" HGDP00102,HGDP00105 esv33055 16 1821189 1822881 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv95591 S 51 0 1 "" 21841 nsv833119 16 1824310 1901486 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452177,nssv1452178,nssv1452179,nssv1452176 M 95 0 4 "" nsv519366 16 1841212 1951127 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696813 S 2026 0 1 "" nsv525861 16 1843652 1848257 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702057 S 2026 0 1 "" nsv833120 16 1883104 1970662 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452197,nssv1452184,nssv1452183,nssv1452182,nssv1452181,nssv1452180,nssv1452196,nssv1452185,nssv1452195,nssv1452190,nssv1452188,nssv1452194,nssv1452192,nssv1452186,nssv1452187,nssv1452201,nssv1452205,nssv1452198,nssv1452200,nssv1452199,nssv1452204,nssv1452202,nssv1452203,nssv1452206,nssv1452208,nssv1452207,nssv1452191,nssv1452193,nssv1452189 M 95 0 29 "" nsv103288 16 1906151 1906151 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv121866 M 24 "" esv33841 16 1918183 1923083 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100990,essv93171,essv99011,essv93582 M 51 4 0 "" 21693,21863,21938,22128 dgv336n27 16 1955122 2028586 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv457344,nsv457345 M 1557 0 2 "" HGDP00433,HGDP00607 nsv521569 16 1961894 2025998 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698185 S 2026 0 1 "" nsv523037 16 1961894 2073902 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698720 S 2026 0 1 "" nsv457348 16 1994156 2027563 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534550 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00626 nsv522978 16 2025296 2025998 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698648 S 2026 0 1 "" nsv457349 16 2045056 2190732 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534551 S 1557 0 1 "" 1780862197_A nsv471381 16 2078712 2125900 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548116,nssv548118,nssv548117 M 3 "" nsv482186 16 2078712 2125900 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558547 S 1 1 0 "" KB1 nsv9331 16 2103685 2118476 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22594 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA10839 nsv1709 16 2104726 2111251 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2945 S 9 1 0 "" NA18555 nsv9332 16 2118476 2128741 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25661,nssv25576,nssv22734,nssv22396 M 31 0 4 Samples from several populations that are part of the HapMap project. "" NA18517,NA18552,NA18972,NA19007 nsv457351 16 2146592 2264304 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534552 S 1557 0 1 "" 1780862347_A nsv1711 16 2189095 2222652 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2946 S 9 1 0 "" NA18555 nsv457353 16 2245540 2355931 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534554 S 1557 0 1 "" 1782681114_A nsv103340 16 2260904 2260904 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv121918 M 24 "" nsv833121 16 2350977 2508230 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452210,nssv1452209 M 95 0 2 "" dgv793e1 16 2476826 2810537 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv7533,essv20057,essv20934,esv393,essv7320,essv23074,essv19898 M 271 0 0 "" NA07048,NA12801,NA12812,NA12813,NA18545,NA18570 nsv833122 16 2491719 2653939 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452214,nssv1452213,nssv1452219,nssv1452211,nssv1452212,nssv1452218,nssv1452216,nssv1452215,nssv1452217 M 95 0 9 "" nsv7275 16 2526474 2670331 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9521,nssv2129,nssv4190 M 9 0 0 "" NA12878,NA18507,NA18555 nsv833123 16 2551249 2754990 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452238,nssv1452239,nssv1452242,nssv1452241,nssv1452220,nssv1452237,nssv1452240,nssv1452227,nssv1452222,nssv1452221,nssv1452236,nssv1452224,nssv1452223,nssv1452226,nssv1452225,nssv1452228,nssv1452235,nssv1452231,nssv1452230,nssv1452229,nssv1452234,nssv1452233,nssv1452232 M 95 1 22 "" nsv9333 16 2570428 2573967 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22053 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA07048 esv33514 16 2589045 2677262 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101148,essv101235,essv93829,essv100934,essv101059,essv95138,essv94831,essv94338,essv95258,essv95260,essv101713,essv95823,essv94577,essv98945,essv92964,essv92678,essv92745,essv96583,essv97221,essv95942,essv95946,essv99683,essv94964,essv92612,essv92604,essv97684,essv100166,essv100403,essv98525 M 51 12 13 "" 21618,21634,21693,21721,21791,21808,21872,21909,21911,21932,21938,21939,21944,22011,22075,22127,22217,22231,22233,22278,22286,22300,22352 nsv510672 16 2592901 2636476 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617424 S 4 0 1 "" CHM nsv9334 16 2598958 2609759 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22113 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA07048 nsv9335 16 2637783 2640624 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22143,nssv26257,nssv20812,nssv21876,nssv23957,nssv20110 M 31 2 4 Samples from several populations that are part of the HapMap project. "" NA07048,NA10863,NA12155,NA12802,NA18502,NA18942 nsv521693 16 2639305 2647450 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698313 S 2026 1 0 "" nsv457354 16 2639305 2690697 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534555 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01249 nsv442390 16 2646796 2669702 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv9337 16 2683435 2687891 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22173 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA07048 nsv519596 16 2687617 2690456 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696942 S 2026 0 1 "" nsv817714 16 2687617 2690697 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417736,nssv1417307 M 112 0 2 "" NA18608,NA19003 esv2750710 16 2730968 2732403 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv95170 S 51 1 0 "" 21721 nsv482187 16 2773955 2776709 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558548 S 1 1 0 "" KB1 nsv509587 16 2832960 2864326 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619676,nssv623682,nssv621020 M 4 3 0 "" NA10860,NA15510,NA18994 nsv1712 16 2832986 2860376 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9962,nssv10075,nssv6656,nssv2947,nssv5583,nssv1291,nssv4191 M 9 7 0 "" NA12156,NA12878,NA18507,NA18555,NA18956,NA19129,NA19240 nsv525220 16 2858293 2859930 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701306 S 2026 0 1 "" nsv833124 16 2871058 2935707 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452246,nssv1452245,nssv1452244,nssv1452243,nssv1452247 M 95 0 5 "" nsv509588 16 2909882 3033778 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619677 S 4 1 0 "" NA10860 nsv510673 16 2909882 3033778 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622701 S 4 0 1 "" NA18994 nsv433167 16 2950446 2955264 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463048 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA19240 nsv103596 16 3001465 3001575 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv122174 M 24 "" nsv833125 16 3007126 3121819 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452248 S 95 0 1 "" nsv509589 16 3035937 3159202 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619678 S 4 1 0 "" NA10860 nsv515926 16 3053899 3055629 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv657950,nssv665330 M 2026 0 2 "" dgv159n21 16 3053899 3065428 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv525573,nsv527051 M 2026 0 2 "" nsv103250 16 3056913 3057072 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv121828 M 24 "" nsv457355 16 3105426 3241898 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534556 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00697 nsv103291 16 3132365 3132365 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv121869 M 24 "" nsv833127 16 3142783 3249414 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452252,nssv1452251,nssv1452249,nssv1452255,nssv1452254,nssv1452250,nssv1452253 M 95 1 6 "" dgv337n27 16 3143036 3191523 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv457357,nsv457356 M 1557 2 0 "" HGDP00615,HGDP01064 nsv457358 16 3154965 3183367 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534559 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01372 nsv524943 16 3155105 3182616 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700960 S 2026 1 0 "" nsv1713 16 3169213 3202513 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5584 S 9 1 0 "" NA19129 nsv524873 16 3191523 3194471 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700878 S 2026 0 1 "" nsv516280 16 3197869 3241898 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv672107,nssv667316 M 2026 2 0 "" nsv509592 16 3202842 3265835 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619679 S 4 1 0 "" NA10860 nsv1714 16 3331202 3364534 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4192 S 9 1 0 "" NA12878 nsv1715 16 3450129 3458874 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2130 S 9 0 1 "" NA18555 nsv1716 16 3501574 3534042 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6657 S 9 1 0 "" NA12156 nsv833128 16 3515123 3680499 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452256 S 95 0 1 "" nsv517451 16 3539656 3601816 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv660828,nssv688654,nssv685534,nssv683165,nssv691831,nssv693407,nssv691306,nssv664564,nssv672174,nssv670473,nssv679617,nssv651815,nssv657687,nssv666921,nssv678430,nssv666872,nssv658323,nssv652117,nssv661957,nssv666614,nssv682877,nssv658713,nssv691500,nssv663104,nssv669930,nssv655687,nssv679896,nssv692962,nssv691419,nssv682653,nssv684752,nssv692835,nssv703490,nssv677728,nssv678595,nssv676852,nssv685485,nssv663279,nssv656780,nssv655260,nssv665204,nssv666645,nssv660432,nssv686618,nssv653975,nssv675085,nssv673338,nssv652280,nssv667425,nssv678271,nssv677811,nssv661902,nssv687634,nssv668724,nssv652929,nssv662405 M 2026 0 56 "" nsv518509 16 3573658 3678962 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695950 S 2026 1 0 "" nsv457359 16 3645016 3658849 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534560 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01066 nsv525301 16 3647748 3658849 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701407 S 2026 0 1 "" nsv833129 16 3660076 3854572 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452257 S 95 0 1 "" nsv516876 16 3670579 3687205 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv673049,nssv654623 M 2026 0 2 "" nsv1717 16 3685768 3713048 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5585 S 9 1 0 "" NA19129 nsv833130 16 3800374 3965511 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452258 S 95 1 0 "" nsv833131 16 3945870 4125558 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452260,nssv1452259,nssv1452262,nssv1452261,nssv1452263 M 95 0 5 "" nsv510410 16 3962382 3968382 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621432,nssv624173 M 4 0 2 "" NA15510,NA18994 nsv525374 16 3972717 3974068 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701495 S 2026 1 0 "" nsv1718 16 3976236 4010254 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7225 S 9 1 0 "" NA12156 nsv517942 16 4048908 4055494 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695353 S 2026 0 1 "" nsv526024 16 4064301 4071884 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702254 S 2026 0 1 "" nsv509593 16 4064554 4128129 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619680 S 4 1 0 "" NA10860 nsv1719 16 4084900 4129628 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7226 S 9 0 1 "" NA12156 nsv528573 16 4094852 4096858 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705192 S 2026 0 1 "" esv2751608 16 4109390 4228924 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6982056,essv6988487,essv6982058,essv6986073,essv6982057 M 771 1 0 "" BEC_516 dgv794e1 16 4149842 4198092 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1014,essv19364,essv24199 M 271 0 0 "" NA07019,NA07056 nsv9338 16 4154190 4157344 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23840 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19144 nsv527866 16 4196464 4402620 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704364 S 2026 0 1 "" nsv524305 16 4202492 4207606 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700206 S 2026 0 1 "" nsv103783 16 4334585 4334815 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv122361 M 24 "" nsv520212 16 4344621 4380829 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv661903,nssv698754,nssv663724 M 2026 0 3 "" nsv833132 16 4360094 4453450 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452264,nssv1452265 M 95 0 2 "" esv32558 16 4584460 4584920 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100242 S 51 1 0 "" 22286 esv33706 16 4710525 4711967 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101552,essv101175,essv96836,essv100952,essv94722,essv97804,essv95443,essv93087,essv101765,essv92959,essv92807,essv96130,essv96058,essv93470,essv99579,essv94900,essv92578,essv96433,essv99320,essv97729,essv100185,essv100501 M 51 22 0 "" 21603,21618,21659,21693,21791,21837,21847,21863,21909,21939,21944,22007,22127,22128,22217,22231,22233,22261,22275,22278,22286,22298 esv2422516 16 4765922 5150981 CNV Deletion Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161427 S 181 0 1 "" ND01527 nsv510674 16 4822448 4872733 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620088 S 4 0 1 "" NA15510 nsv1720 16 4844260 4890579 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6659 S 9 0 1 "" NA12156 dgv795e1 16 4912851 5364830 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv744,essv10673 M 271 0 0 "" NA18855 nsv528586 16 4941305 5011671 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705211 S 2026 1 0 "" esv33834 16 4943621 4947896 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93808,essv95010 M 51 2 0 "" 21634,22231 nsv9339 16 4949933 4954276 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22547 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18563 nsv457360 16 4950914 5274685 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534561 S 1557 0 1 "" NINDS_90 esv34300 16 4995940 5312536 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6979879,essv6979878,essv6979877,essv6990419,essv6979880 M 771 1 0 "" NA18855 dgv796e1 16 4995942 5310411 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv3074,essv17400,essv19547 M 271 0 0 "" NA12864,NA18855,NA18981 nsv817715 16 4996296 5299354 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416403 S 112 1 0 "" NA18855 nsv1722 16 5021099 5065949 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7227 S 9 0 1 "" NA12156 nsv9340 16 5046136 5050660 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25599 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18972 nsv482188 16 5061811 5077379 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558549 S 1 1 0 "" KB1 nsv482189 16 5074303 5087790 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558550 S 1 1 0 "" KB1 nsv518948 16 5134459 5191132 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696415 S 2026 0 1 "" nsv516117 16 5225395 5291112 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv686619,nssv688261,nssv668846,nssv666316 M 2026 0 4 "" nsv507799 16 5275284 5281284 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623201 S 4 1 0 "" NA18994 nsv9341 16 5286149 5293272 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23318,nssv26275,nssv22456,nssv24966,nssv22203,nssv25683,nssv25622,nssv27680,nssv20239,nssv22624,nssv20842,nssv21782,nssv21906 M 31 10 3 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10863,NA12740,NA18502,NA18504,NA18517,NA18552,NA18572,NA18942,NA18972,NA19221 nsv517528 16 5292667 5299354 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv677022,nssv652281,nssv665896,nssv672175,nssv656882 M 2026 5 0 "" nsv134 16 5312714 5329006 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv134 S 1 1 0 "" NA15510 nsv1723 16 5312714 5329006 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10944 S 9 1 0 "" NA15510 nsv9342 16 5366406 5369809 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23281,nssv23867,nssv26292 M 31 0 3 Samples from several populations that are part of the HapMap project. "" NA18502,NA19144,NA19173 nsv1724 16 5396185 5430203 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7228 S 9 1 0 "" NA12156 esv33090 16 5403356 5407355 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97584 S 51 0 1 "" 21616 esv32682 16 5421933 5424242 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101515 S 51 0 1 "" 21603 nsv833133 16 5523054 5671671 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452266 S 95 0 1 "" esv2751610 16 5523319 5562468 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6989785,essv6983405,essv6983406 M 771 0 1 "" BEC_649 nsv521772 16 5523368 5559790 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694539 S 2026 0 1 "" nsv510675 16 5533391 5599988 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622702 S 4 0 1 "" NA18994 nsv523610 16 5533820 5540753 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699404 S 2026 0 1 "" dgv797e1 16 5542095 5551122 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv185,esv1054 M 271 0 0 "" NA18994 nsv817716 16 5548535 5553562 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417661 S 112 0 1 "" NA18994 nsv103070 16 5713327 5713427 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv121648 M 24 "" nsv515535 16 5770743 5792282 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv663851,nssv667198 M 2026 2 0 "" nsv509594 16 5773003 5832405 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623683 S 4 1 0 "" NA18994 nsv527117 16 5803764 5825941 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703499 S 2026 0 1 "" nsv1725 16 5976689 5999761 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7229 S 9 0 1 "" NA12156 nsv457362 16 6077412 6653778 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534562 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00655 nsv457364 16 6084649 6137800 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534564 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00106 nsv1726 16 6161100 6195634 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4193 S 9 1 0 "" NA12878 nsv457365 16 6197543 6215532 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534565 S 1557 0 1 "" 1780854261_A nsv522983 16 6197543 6215532 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698653 S 2026 0 1 "" nsv519158 16 6276738 6465984 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696638 S 2026 0 1 "" nsv457366 16 6336949 6641567 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534566 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01275 nsv526238 16 6352866 6805182 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702507 S 2026 0 1 "" nsv527101 16 6358885 6360927 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703481 S 2026 0 1 "" nsv520905 16 6381936 6382185 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv677298,nssv681575,nssv693511 M 2026 0 3 "" nsv521039 16 6382185 6385294 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697749 S 2026 0 1 "" nsv103531 16 6429975 6429975 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv122109 M 24 "" nsv457367 16 6445965 6696690 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534567 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00672 dgv798e1 16 6448405 6449672 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1316,essv8504 M 271 0 0 "" NA18854 nsv518384 16 6452397 6499568 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695815 S 2026 1 0 "" nsv510411 16 6472013 6478013 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618417 S 4 0 1 "" CHM nsv103669 16 6502133 6502285 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv122247 M 24 "" nsv520093 16 6518170 6530335 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697220 S 2026 0 1 "" nsv528564 16 6564364 6573081 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705180 S 2026 1 0 "" dgv338n27 16 6577114 6629093 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv457368,nsv457369,nsv457370,nsv457371 M 1557 4 0 "" HGDP00548,HGDP00550,HGDP00552,HGDP00787 nsv520695 16 6582197 6601693 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv677694,nssv674196 M 2026 0 2 "" dgv799e1 16 6588011 6878909 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv683,essv16029 M 271 0 0 "" NA18501 nsv524570 16 6594460 6621638 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700525 S 2026 1 0 "" dgv800e1 16 6594720 6632981 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv24643,essv20880 M 271 0 0 "" NA10846,NA12145 dgv114e55 16 6598310 6632981 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv34460,esv35083 M 771 2 0 "" NA10846,NA12145 nsv522105 16 6612412 6612742 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694877 S 2026 1 0 "" nsv457372 16 6617778 6653778 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534572 S 1557 0 1 "" 1780854080_A nsv522025 16 6617778 6653778 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694795 S 2026 0 1 "" esv2422241 16 6623718 6852974 CNV Deletion Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161448 S 181 0 1 "" ND03710 nsv523779 16 6640890 6643930 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699602 S 2026 0 1 "" nsv457373 16 6668604 6714697 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534573 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00771 nsv519407 16 6685600 6686373 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv677299,nssv656005 M 2026 0 2 "" nsv457375 16 6687103 6694583 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534574 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00927 nsv525921 16 6694529 6696397 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702125 S 2026 0 1 "" nsv437800 16 6710879 6745544 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467681 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18500 esv34485 16 6713809 6742380 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6979139,essv6979138,essv6988109 M 771 0 1 "" NA18500 dgv801e1 16 6713809 6752649 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv13346,essv9577 M 271 0 0 "" NA18500,NA18501 nsv9343 16 6715845 6722118 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24991 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18504 essv1540 16 6717197 6721490 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19012 nsv457376 16 6718997 6842149 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534575 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00771 dgv339n27 16 6778399 6867243 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv457379,nsv457377 M 1557 0 2 "" HGDP01262,HGDP01276 nsv457378 16 6778399 6954663 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534577 S 1557 0 1 "" NINDS_96 nsv525006 16 6783832 6784096 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701041 S 2026 0 1 "" nsv528734 16 6813789 6888634 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705390 S 2026 0 1 "" nsv103775 16 6849132 6849197 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv122353 M 24 "" nsv521646 16 6875269 6888634 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694469 S 2026 0 1 "" nsv528746 16 6888634 6972054 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705407 S 2026 0 1 "" nsv526472 16 6912217 7002446 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702777 S 2026 1 0 "" dgv802e1 16 6973749 7021963 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1191,essv5616 M 271 0 0 "" NA18593 nsv515947 16 6980831 6986259 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv665411,nssv656279,nssv682595,nssv677272 M 2026 0 4 "" nsv817718 16 6986259 6991129 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417406 S 112 0 1 "" NA18951 nsv457381 16 6986259 7034208 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534579 S 1557 0 1 "" 1780862176_A nsv457382 16 6990341 7022046 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534580 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00264 nsv817719 16 7002446 7009057 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417260 S 112 0 1 "" NA18593 nsv457383 16 7002446 7022046 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534581 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00771 esv34350 16 7004037 7021960 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6989108,essv6988214 M 771 0 1 "" NA18593 nsv9344 16 7025772 7033082 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22793 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19007 nsv457384 16 7046361 7066733 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534582 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00808 nsv517828 16 7046361 7066733 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695233 S 2026 0 1 "" nsv525047 16 7049010 7051528 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701092 S 2026 0 1 "" nsv521317 16 7055291 7105351 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697924 S 2026 0 1 "" nsv1727 16 7073764 7109087 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4194 S 9 1 0 "" NA12878 nsv526537 16 7085568 7093693 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702851 S 2026 0 1 "" nsv518859 16 7110960 7112069 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696313 S 2026 0 1 "" nsv522167 16 7128254 7141446 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694940 S 2026 0 1 "" nsv525094 16 7132653 7141446 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701153 S 2026 0 1 "" nsv527944 16 7140241 7140564 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704452 S 2026 0 1 "" nsv528008 16 7153393 7177956 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704534 S 2026 0 1 "" nsv1728 16 7186459 7231400 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7230 S 9 0 1 "" NA12156 nsv1729 16 7334099 7378423 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2132 S 9 0 1 "" NA18555 nsv520018 16 7345612 7411607 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv681407,nssv700391,nssv704964,nssv660102 M 2026 0 4 "" nsv457386 16 7345612 7419133 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534583 S 1557 0 1 "" 1780846005_A nsv527093 16 7427533 7429077 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703472 S 2026 0 1 "" nsv507800 16 7557013 7563013 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620595,nssv617906,nssv623202,nssv619156 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv524819 16 7588269 7588446 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700814 S 2026 0 1 "" nsv457387 16 7716125 7743018 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534584 S 1557 1 0 "" 1780854096_A nsv516474 16 7796213 7797802 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv676987,nssv668588,nssv700192 M 2026 2 1 "" nsv518245 16 7796213 7803360 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695675 S 2026 1 0 "" nsv524014 16 7797802 7801209 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699874 S 2026 0 1 "" dgv803e1 16 7855056 7915358 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv20445,esv1295 M 271 0 0 "" NA06994 nsv817720 16 7855056 7917529 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417073 S 112 0 1 "" NA06994 nsv509595 16 8046158 8090541 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623684 S 4 1 0 "" NA18994 nsv1730 16 8052809 8078101 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5586 S 9 1 0 "" NA19129 nsv507801 16 8080809 8086809 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620596,nssv617907,nssv619157 M 4 3 0 "" CHM,NA10860,NA15510 nsv528029 16 8159755 8170014 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704559 S 2026 0 1 "" nsv833134 16 8189177 8346262 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452267 S 95 1 0 "" nsv518113 16 8317168 8524666 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695527 S 2026 1 0 "" nsv103758 16 8402574 8402724 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv122336 M 24 "" dgv340n27 16 8435410 8567137 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv457389,nsv457390,nsv457388 M 1557 3 0 "" HGDP00397,HGDP00407,HGDP00438 nsv526026 16 8436036 8443686 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702256 S 2026 0 1 "" nsv457391 16 8443686 8488151 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534588 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00125 nsv525484 16 8449241 8467510 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701613 S 2026 0 1 "" nsv522494 16 8471585 8499502 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705862 S 2026 0 1 "" nsv103849 16 8651185 8652744 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv122427 M 24 "" nsv517642 16 8662622 8663974 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv691378,nssv680082,nssv666297,nssv675635,nssv685204,nssv689285,nssv663372,nssv652656 M 2026 0 8 "" nsv457393 16 8662648 8747455 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534589 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01071 nsv523677 16 8671929 8687091 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699481 S 2026 0 1 "" nsv522342 16 8678687 8684618 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695122 S 2026 0 1 "" nsv522898 16 8687091 8770491 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698556 S 2026 1 0 "" nsv457394 16 8699413 8917714 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534590 S 1557 1 0 "" 1782681277_A dgv341n27 16 8726183 8865964 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv457395,nsv457397 M 1557 2 0 "" HGDP01063,HGDP01291 nsv457398 16 8747455 8809912 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534594 S 1557 1 0 "" NINDS_146 nsv521109 16 8830716 8891770 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697791 S 2026 0 1 "" nsv833135 16 8847810 9028458 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452268 S 95 0 1 "" nsv457399 16 8917714 8985113 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534595 S 1557 0 1 "" 1780862415_A nsv457400 16 8975803 9097025 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534596 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00776 nsv527498 16 8976412 8995885 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703948 S 2026 0 1 "" nsv833136 16 8983772 9080198 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452270,nssv1452269 M 95 0 2 "" nsv1731 16 9046621 9091522 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7231 S 9 0 1 "" NA12156 nsv525864 16 9072555 9214168 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702061 S 2026 0 1 "" nsv457401 16 9097025 9150021 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534597 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00515 nsv519065 16 9109471 9153948 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696537 S 2026 1 0 "" nsv457402 16 9112864 9147487 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534598 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01071 dgv160n21 16 9126202 9147487 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv524325,nsv528329 M 2026 0 2 "" dgv161n21 16 9192461 9210189 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv518409,nsv522789 M 2026 0 2 "" nsv457403 16 9232588 9276197 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534599 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00535 nsv526856 16 9528370 9531090 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703214 S 2026 0 1 "" esv2751617 16 9546629 9662313 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6983294,essv6983295,essv6983296,essv6983297,essv6983298 M 771 1 0 "" BEC_636 dgv162n21 16 9624870 9691664 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv525138,nsv527800 M 2026 0 2 "" dgv804e1 16 9721050 9729949 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1157,essv16170 M 271 0 0 "" NA18506 nsv518585 16 9772508 9783883 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696032 S 2026 0 1 "" esv2422500 16 9915810 10323018 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161374 S 181 1 0 "" ND03587 dgv805e1 16 9968477 10165051 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv38,essv16631,essv17485 M 271 0 0 "" NA12762,NA19142 nsv833138 16 10072644 10219549 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452271 S 95 0 1 "" nsv9345 16 10106939 10110128 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25735,nssv23309,nssv20140 M 31 3 0 Samples from several populations that are part of the HapMap project. "" NA12802,NA18517,NA19173 nsv525725 16 10113676 10114153 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701889 S 2026 0 1 "" nsv9346 16 10167420 10169621 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22233 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA07048 nsv457404 16 10231648 10265581 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534600 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00473 dgv163n21 16 10265581 10268124 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv526630,nsv518428 M 2026 0 2 "" nsv516246 16 10275394 10311911 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv681714,nssv692056,nssv667024 M 2026 0 3 "" nsv1733 16 10315703 10349558 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2133 S 9 0 1 "" NA18555 nsv507802 16 10319913 10325913 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620597 S 4 1 0 "" NA15510 nsv521816 16 10320373 10328250 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694588 S 2026 0 1 "" nsv519263 16 10388347 10467886 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv686261,nssv663542,nssv693331,nssv655115,nssv692779 M 2026 3 2 "" nsv457405 16 10389813 10467886 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534601 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00517 nsv833139 16 10443731 10478711 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452272 S 95 0 1 "" nsv516716 16 10566397 10567387 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv693033,nssv671190,nssv670815,nssv690675,nssv681036,nssv682923,nssv676903,nssv670388,nssv680429 M 2026 0 9 "" nsv528167 16 10566397 10570539 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704716 S 2026 0 1 "" nsv517056 16 10593713 10594694 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv653700,nssv666895,nssv696489,nssv673747,nssv663474 M 2026 1 4 "" nsv833140 16 10665371 10792855 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452273 S 95 0 1 "" nsv522111 16 10671946 10674800 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694883 S 2026 0 1 "" nsv103022 16 11041889 11048374 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv121600 M 24 "" nsv525548 16 11171357 11274090 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701686 S 2026 0 1 "" nsv510412 16 11273653 11279653 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621433 S 4 0 1 "" NA15510 nsv521106 16 11384842 11406673 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697790 S 2026 0 1 "" nsv509596 16 11401412 11444087 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623685 S 4 1 0 "" NA18994 nsv519443 16 11413809 11426275 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv656207,nssv676849,nssv672349,nssv657134 M 2026 0 4 "" nsv520088 16 11434679 11481114 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv661677,nssv660623 M 2026 0 2 "" nsv457408 16 11450395 11465783 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534603 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01271 nsv457409 16 11450395 11729567 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534604 S 1557 1 0 "" 1780862066_A nsv524676 16 11476955 11703080 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700647 S 2026 0 1 "" nsv518767 16 11608309 11615072 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696216 S 2026 0 1 "" nsv457410 16 11631856 11661955 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534605 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01211 nsv1734 16 11685919 11699876 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10077 S 9 1 0 "" NA18956 nsv525726 16 11701568 11729567 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701890 S 2026 1 0 "" nsv1735 16 11894464 11939098 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7233 S 9 0 1 "" NA12156 nsv519892 16 11917282 11917945 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv659331,nssv661602 M 2026 0 2 "" nsv524025 16 11917282 11924420 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699887 S 2026 0 1 "" nsv527197 16 11978842 11981301 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703596 S 2026 0 1 "" nsv528952 16 12129565 12142378 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705646 S 2026 0 1 "" nsv833141 16 12222114 12395493 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452274,nssv1452275 M 95 2 0 "" nsv516932 16 12270536 12270805 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv684437,nssv655032 M 2026 2 0 "" nsv1736 16 12385308 12430208 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7234 S 9 0 1 "" NA12156 nsv520000 16 12421298 12430662 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697171 S 2026 0 1 "" nsv524986 16 12519977 12520191 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701015 S 2026 0 1 "" esv2751546 16 12542999 12582205 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6983021,essv6989340,essv6989720 M 771 0 1 "" BEC_535 nsv507803 16 12544386 12550386 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619158 S 4 1 0 "" NA10860 nsv9348 16 12549915 12556691 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22577,nssv25757,nssv22927,nssv26596,nssv22822 M 31 0 5 Samples from several populations that are part of the HapMap project. "" NA18517,NA18537,NA18563,NA18860,NA19007 dgv806e1 16 12554682 12561909 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv8069,esv1379,essv9549,essv11308,essv8882,essv13966 M 271 0 0 "" NA18861,NA18863,NA19160,NA19161,NA19171 nsv528018 16 12561151 12564822 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704546 S 2026 0 1 "" nsv9349 16 12563523 12582140 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22851,nssv20561,nssv23346,nssv26610,nssv25779 M 31 0 5 Samples from several populations that are part of the HapMap project. "" NA12740,NA12872,NA18517,NA18860,NA19007 nsv437802 16 12574577 12615795 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467683 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19194 nsv517039 16 12575148 12580895 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv659419,nssv652169,nssv679796,nssv680702,nssv679220,nssv654754,nssv694128,nssv672173,nssv676077,nssv671047,nssv672587,nssv653663,nssv692749,nssv700964,nssv669929 M 2026 0 15 "" dgv342n27 16 12576133 12580363 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv457412,nsv457413 M 1557 0 2 "" HGDP01033,NINDS_163 nsv523735 16 12576836 12583348 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699551 S 2026 0 1 "" nsv457414 16 12579625 12581598 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534608 S 1557 1 0 "" NINDS_106 dgv343n27 16 12579841 12582463 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv457415,nsv457416,nsv457417 M 1557 0 3 "" HGDP00795,HGDP01300,NINDS_227 nsv457419 16 12579853 12584030 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534613 S 1557 0 1 "" 1780862403_A nsv9350 16 12582140 12585680 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27688 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19221 dgv807e1 16 12584246 12619700 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv884,essv17353,essv8037,essv12880 M 271 0 0 "" NA18502,NA18517,NA19103 nsv507804 16 12584480 12590480 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623203 S 4 1 0 "" NA18994 nsv9351 16 12588878 12615543 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26309,nssv25801 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18502,NA18517 nsv517216 16 12592501 12613849 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv669190,nssv698408,nssv704493,nssv670471,nssv662319,nssv663699,nssv698901,nssv665264,nssv702133,nssv679113,nssv692538,nssv654036,nssv670045,nssv690068 M 2026 0 14 "" nsv433297 16 12592501 12613937 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463178 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA18517 dgv808e1 16 12592528 12619700 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv8655,essv8993,essv11407,essv11484 M 271 0 0 "" NA18856,NA19101,NA19192,NA19194 dgv809e1 16 12599033 12615904 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv15950,essv13345 M 271 0 0 "" NA18500,NA18515 nsv817721 16 12599154 12613849 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416501,nssv1416404,nssv1416500,nssv1418510,nssv1418511,nssv1416406 M 112 0 6 "" NA18515,NA18517,NA18856,NA18857,NA19192,NA19194 nsv457420 16 12599294 12604712 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534614 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00628 nsv457421 16 12600847 12611981 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534615 S 1557 0 1 "" NINDS_180 nsv442709 16 12607660 12614014 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv457422 16 12613431 12618526 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534616 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00052 nsv9352 16 12617545 12618694 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22486,nssv23337 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA18552,NA19173 nsv521843 16 12629022 12636088 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694616 S 2026 0 1 "" dgv115e55 16 12725421 12799537 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv2751547,esv2751548 M 771 0 2 "" BEC_177,BEC_717 nsv525286 16 12734286 12786093 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701391 S 2026 0 1 "" esv2751549 16 12736507 12787947 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6982260,essv6982259 M 771 0 1 "" BEC_408 nsv833142 16 12830073 13006922 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452276,nssv1452277 M 95 0 2 "" nsv1737 16 12923764 12968392 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4640 S 9 0 1 "" NA19129 nsv1738 16 13219556 13222038 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2948 S 9 1 0 "" NA18555 nsv521045 16 13265389 13271756 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv686661,nssv680668 M 2026 0 2 "" nsv519404 16 13339855 13365215 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696835 S 2026 0 1 "" nsv507805 16 13425866 13431866 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623204,nssv617908,nssv619159,nssv620598 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv833143 16 13580817 13736820 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452278 S 95 1 0 "" nsv103328 16 13803374 13803439 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv121906 M 24 "" nsv528904 16 13978754 14005641 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705588 S 2026 0 1 "" nsv457423 16 14005641 14078070 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534617 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00080 nsv520888 16 14140977 14147804 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv683976,nssv677021,nssv681215 M 2026 3 0 "" nsv103832 16 14317426 14318627 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv122410 M 24 "" nsv1739 16 14339141 14379988 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7235 S 9 0 1 "" NA12156 nsv527007 16 14369798 14372157 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703382 S 2026 0 1 "" dgv810e1 16 14529556 14783012 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv8105,essv17149 M 271 0 0 "" NA19171,NA19206 dgv811e1 16 14529556 15274051 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv6594,esv375 M 271 0 0 "" NA18621 nsv833144 16 14588657 14815008 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452279,nssv1452281,nssv1452280,nssv1452282,nssv1452283 M 95 5 0 "" nsv1740 16 14655664 14771096 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4195,nssv1292 M 9 0 2 "" NA12878,NA19240 essv16469 16 14662503 14783012 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19139 dgv812e1 16 14662503 15133811 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv11187,essv10949,essv22594,essv4287,essv22950,essv13932,essv16011,essv406,essv3470 M 271 0 0 "" NA07348,NA07357,NA18501,NA18603,NA18854,NA18971,NA18992,NA19209,NA19211 nsv9353 16 14692801 14710578 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26162,nssv25844,nssv20591,nssv25645,nssv23423,nssv26623,nssv22956,nssv24014,nssv22516,nssv23365,nssv26326,nssv20872,nssv23821,nssv25016,nssv22654,nssv25823 M 31 9 5 Samples from several populations that are part of the HapMap project. "" NA10839,NA11830,NA12155,NA12872,NA18502,NA18504,NA18517,NA18537,NA18552,NA18860,NA18942,NA18972,NA19132,NA19173 nsv510676 16 14710000 14833590 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618931 S 4 0 1 "" NA10860 nsv511045 16 14710000 15382708 OTHER Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618625,nssv622415,nssv621635 M 4 0 0 "" CHM,NA10860,NA15510 nsv7277 16 14727039 15361518 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9522,nssv10945,nssv9523,nssv10946,nssv10947,nssv5588,nssv1294,nssv10078,nssv1295,nssv10079,nssv10080,nssv6660,nssv5587,nssv2134 M 9 0 0 "" NA12156,NA15510,NA18507,NA18555,NA18956,NA19129,NA19240 nsv9354 16 14731918 14749700 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23848,nssv23451,nssv23479,nssv25865,nssv22684,nssv25886,nssv20902,nssv26343,nssv20621,nssv22546,nssv22985,nssv25667,nssv25041,nssv26211,nssv26636,nssv24041 M 31 9 5 Samples from several populations that are part of the HapMap project. "" NA10839,NA11830,NA12155,NA12872,NA18502,NA18504,NA18517,NA18537,NA18552,NA18860,NA18942,NA18972,NA19132,NA19173 dgv813e1 16 14789257 15133811 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv3205,essv1896,essv1395,essv6739,essv3167,essv2994,essv8793,essv7535,essv6954,essv7270,essv7397,essv435,essv2870,essv7215 M 271 0 0 "" NA18508,NA18545,NA18547,NA18562,NA18582,NA18592,NA18623,NA18952,NA18953,NA18974,NA18976,NA18981,NA19007,NA19012 esv32598 16 14817728 15032941 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93857,essv95104,essv98215,essv97893,essv99115,essv92816,essv96163,essv100392,essv98344 M 51 9 0 "" 21634,21721,21772,21837,21938,21944,22007,22300,22352 nsv509597 16 14833590 14892928 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623686 S 4 1 0 "" NA18994 nsv471383 16 14835144 14897514 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548120,nssv548119,nssv548121 M 3 "" nsv433435 16 14862008 14962366 CNV Gain Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463316 S 9 1 0 Samples from several populations that are part of the HapMap project. "" NA12156 nsv103370 16 14875360 14875435 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv121948 M 24 "" nsv9355 16 14896075 14929566 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27696,nssv22880,nssv21924,nssv22821,nssv22576,nssv22713,nssv25689,nssv23013,nssv22909,nssv23041 M 31 2 6 Samples from several populations that are part of the HapMap project. "" NA10839,NA18537,NA18552,NA18972,NA18975,NA18980,NA19007,NA19221 dgv814e1 16 14896111 15105859 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv7082,essv17489,essv2498,essv6726,essv2261,essv1594,essv236,essv1125 M 271 0 0 "" NA12762,NA18537,NA18608,NA18942,NA18948,NA18964,NA18966,NA19003 essv12354 16 14896111 15274051 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19138 nsv442710 16 14897364 15016088 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv136 16 14898879 14973293 OTHER Inversion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv136 S 1 0 0 "" NA15510 dgv2n1 16 14901376 15010521 OTHER Inversion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis nsv137,nsv138 M 1 0 0 "" NA15510 nsv9356 16 14932517 14941163 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27704 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19221 nsv471384 16 14938801 14953432 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548123,nssv548125,nssv548124 M 3 "" nsv9357 16 14955356 15033246 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20932,nssv25066,nssv26359,nssv26649,nssv25741,nssv22850,nssv22938,nssv23099,nssv21954,nssv25907,nssv22398 M 31 0 11 Samples from several populations that are part of the HapMap project. "" NA18502,NA18504,NA18517,NA18537,NA18564,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007 dgv11n31 16 14966820 15039053 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis nsv471385,nsv471532 M 3 "" nsv482191 16 14976334 15039053 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558552 S 1 1 0 "" KB1 nsv509598 16 15026758 15068695 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623687 S 4 1 0 "" NA18994 dgv344n27 16 15032942 15076261 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv457425,nsv457424 M 1557 0 2 "" 1780862015_A,HGDP00005 nsv457426 16 15032942 15076261 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534620 S 1557 1 0 "" 1782681079_A nsv517095 16 15032942 16541073 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv672918,nssv676212,nssv669746,nssv703958,nssv702602,nssv664977,nssv680482,nssv673179,nssv673585,nssv686596,nssv676050,nssv704279,nssv663923,nssv699475,nssv681278,nssv693098,nssv703680,nssv695121,nssv699888,nssv699281,nssv693688,nssv670472,nssv697070,nssv687494,nssv674086,nssv675346,nssv685484,nssv676986,nssv666552,nssv659242,nssv691977,nssv697661,nssv666996,nssv657738,nssv683235,nssv664503,nssv659557,nssv679674,nssv653777,nssv678189,nssv679114,nssv695652,nssv682728,nssv688822,nssv702783,nssv677671,nssv671472,nssv662403,nssv678616,nssv698618,nssv676738,nssv704438 M 2026 26 26 "" dgv815e1 16 15039073 15274051 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv16417,essv5094 M 271 0 0 "" NA18577,NA19139 nsv9359 16 15122434 15163059 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27711,nssv25763,nssv22967,nssv22606,nssv20651 M 31 2 3 Samples from several populations that are part of the HapMap project. "" NA12872,NA18552,NA18972,NA19007,NA19221 nsv833145 16 15202458 15407666 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452284,nssv1452287,nssv1452286,nssv1452285,nssv1452290,nssv1452289,nssv1452288 M 95 7 0 "" nsv9360 16 15233376 15236238 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25785 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18972 nsv833146 16 15316547 15425383 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452293,nssv1452291,nssv1452292 M 95 3 0 "" nsv457428 16 15387380 18072544 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534621 S 1557 1 0 "" 1780862014_A nsv1741 16 15388997 15418202 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10081 S 9 1 0 "" NA18956 nsv833147 16 15445744 15611619 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452294 S 95 0 1 "" nsv510677 16 15498234 15565863 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620089 S 4 0 1 "" NA15510 nsv469626 16 15601000 15767810 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649551 M 265 0 3 Samples from several populations that are part of the HapMap project. "" nsv9361 16 15711487 15721179 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27718,nssv26405 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA18502,NA19221 nsv1742 16 15807153 15838779 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10083 S 9 1 0 "" NA18956 nsv833149 16 15816904 15981312 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452297,nssv1452296,nssv1452295 M 95 0 3 "" dgv345n27 16 15885233 15933251 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv457430,nsv457433,nsv457435,nsv457431,nsv457434 M 1557 5 0 "" HGDP00906,HGDP00907,HGDP00911,HGDP00928,HGDP00941 nsv457432 16 15887748 15913069 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534625 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01202 nsv457436 16 15887748 15956088 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534629 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01201 nsv442391 16 15888009 15931537 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv817722 16 15908585 15913069 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415793 S 112 0 1 "" NA12875 nsv1745 16 15976266 15982046 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9524 S 9 1 0 "" NA18507 nsv442392 16 15979352 15985377 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv816e1 16 16092718 16304613 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv6617,essv8806 M 271 0 0 "" NA18508,NA18621 dgv817e1 16 16092718 16831289 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv3196,essv11129,essv2822,essv3452,essv1843,essv16077,essv22582,essv22948,essv4156,essv6760,essv7565,essv22408,essv10944,essv4295,esv810,essv322,essv2311,essv2044,essv453,essv7370,essv7729,essv3862 M 271 0 0 "" NA07348,NA07357,NA10861,NA18501,NA18545,NA18555,NA18562,NA18570,NA18603,NA18633,NA18940,NA18949,NA18952,NA18971,NA18974,NA18976,NA18987,NA18992,NA18994,NA19209,NA19211 nsv457437 16 16128359 16197033 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534630 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00515 nsv469785 16 16129096 16285870 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649806 M 265 1 2 Samples from several populations that are part of the HapMap project. "" esv33614 16 16192414 16742637 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101435,essv98879,essv101273,essv101186,essv93865,essv93794,essv93812,essv100965,essv95076,essv95100,essv98198,essv94704,essv94826,essv94043,essv93989,essv97958,essv97882,essv97807,essv95526,essv93071,essv93040,essv95338,essv97358,essv101644,essv95866,essv94543,essv98987,essv98957,essv92859,essv92878,essv92693,essv92776,essv93628,essv93761,essv96101,essv96113,essv97169,essv95954,essv95992,essv93535,essv93378,essv94863,essv94875,essv92608,essv96544,essv96525,essv96484,essv97709,essv97744,essv100276,essv100170,essv100584,essv100293,essv98421 M 51 17 32 "" 21603,21606,21618,21634,21693,21721,21772,21791,21802,21837,21847,21863,21872,21879,21909,21911,21932,21938,21939,21944,21972,22007,22075,22127,22128,22170,22231,22233,22261,22278,22286,22298,22300,22352 dgv818e1 16 16260667 16653145 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv197,essv6426,essv6062,essv499,essv7468 M 271 0 0 "" NA18545,NA18603,NA18633,NA18952,NA18994 nsv509599 16 16291579 16428109 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619681,nssv621021 M 4 2 0 "" NA10860,NA15510 nsv9362 16 16292396 16293573 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23894,nssv23507 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA19144,NA19173 nsv9363 16 16294729 16316579 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22636,nssv22879,nssv22996,nssv25807,nssv23127 M 31 0 5 Samples from several populations that are part of the HapMap project. "" NA18537,NA18552,NA18972,NA18980,NA19007 nsv1746 16 16349901 16375507 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4196 S 9 1 0 "" NA12878 nsv9364 16 16363092 16372502 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20962,nssv20681,nssv24957 M 31 3 0 Samples from several populations that are part of the HapMap project. "" NA12872,NA18942,NA19240 nsv833150 16 16453835 16649933 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452308,nssv1452301,nssv1452326,nssv1452325,nssv1452329,nssv1452315,nssv1452328,nssv1452300,nssv1452298,nssv1452327,nssv1452299,nssv1452303,nssv1452332,nssv1452302,nssv1452331,nssv1452307,nssv1452330,nssv1452306,nssv1452304,nssv1452309,nssv1452313,nssv1452312,nssv1452311,nssv1452305,nssv1452316,nssv1452324,nssv1452314,nssv1452310,nssv1452323,nssv1452318,nssv1452317,nssv1452322,nssv1452321,nssv1452320,nssv1452319 M 95 35 0 "" nsv509600 16 16468008 16468008 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623688 S 4 1 0 "" NA18994 nsv9365 16 16469461 16472390 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22520,nssv26420,nssv25829 M 31 0 3 Samples from several populations that are part of the HapMap project. "" NA18502,NA18853,NA18972 dgv819e1 16 16481609 16831289 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2480,essv20788,essv7291,essv4882 M 271 0 0 "" NA12146,NA18561,NA18592,NA18999 nsv469652 16 16481610 16650378 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649580 M 265 2 1 Samples from several populations that are part of the HapMap project. "" nsv510413 16 16506641 16512641 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621434 S 4 0 1 "" NA15510 nsv833151 16 16509328 16715772 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452343,nssv1452352,nssv1452337,nssv1452342,nssv1452334,nssv1452335,nssv1452340,nssv1452338,nssv1452344,nssv1452351,nssv1452341,nssv1452333,nssv1452347,nssv1452350,nssv1452346,nssv1452345,nssv1452349,nssv1452348,nssv1452353,nssv1452339,nssv1452336 M 95 21 0 "" nsv9366 16 16537767 16557103 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20165 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA10847 nsv442711 16 16540862 16598301 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv9367 16 16576575 16587702 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22908 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18980 nsv833152 16 16627630 16816757 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452355,nssv1452354,nssv1452356,nssv1452357 M 95 4 0 "" nsv7278 16 16628094 18686540 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2135,nssv10084 M 9 0 0 "" NA18555,NA18956 nsv9368 16 16632502 16640663 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22772,nssv26435,nssv22666,nssv24982,nssv23404,nssv23921,nssv25928,nssv21984,nssv25850,nssv20170,nssv26230,nssv25091,nssv22550,nssv22263,nssv24068,nssv23535,nssv26662,nssv23155,nssv27755,nssv20195,nssv23024,nssv22458,nssv20711,nssv22937,nssv21812,nssv20992,nssv21936 M 31 27 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10847,NA10863,NA12155,NA12740,NA12802,NA12872,NA18502,NA18504,NA18517,NA18537,NA18552,NA18564,NA18853,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19144,NA19173,NA19221,NA19240 nsv9370 16 16702971 16705030 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23183,nssv23052,nssv22293 M 31 0 3 Samples from several populations that are part of the HapMap project. "" NA07048,NA18537,NA19007 nsv510678 16 16730011 16799696 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618932 S 4 0 1 "" NA10860 nsv1747 16 16815143 16862703 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4197,nssv5591,nssv10948,nssv2136,nssv1296 M 9 0 5 "" NA12878,NA15510,NA18555,NA19129,NA19240 esv2751550 16 16824638 18688438 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6985612,essv6981570,essv6981571,essv6981572,essv6988420 M 771 1 0 "" BEC_301 nsv139 16 16835304 16853911 CNV Loss Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv139 S 1 0 1 "" NA15510 nsv510679 16 16839699 16876573 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618933 S 4 0 1 "" NA10860 nsv511046 16 16839699 16916838 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621636 S 4 0 0 "" NA15510 nsv1748 16 16882507 16917223 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1297 S 9 1 0 "" NA19240 nsv507806 16 16893326 16899326 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617909,nssv619161 M 4 2 0 "" CHM,NA10860 nsv521638 16 17033317 17034924 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698256 S 2026 0 1 "" nsv833153 16 17074705 17250878 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452359,nssv1452358 M 95 2 0 "" nsv103826 16 17145213 17145269 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv122404 M 24 "" nsv1749 16 17257626 17267859 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7236 S 9 0 1 "" NA12156 nsv833154 16 17296636 17474358 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452360 S 95 0 1 "" dgv820e1 16 17441601 18293192 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv7626,essv7221 M 271 0 0 "" NA18547 esv587 16 17441601 19066807 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent + Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 "" nsv1750 16 17453780 17488286 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2949 S 9 1 0 "" NA18555 esv34395 16 17499663 18171589 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6979405,essv6979404,essv6990361,essv6986856,essv6986857 M 771 1 0 "" NA18547 nsv817723 16 17516975 18072544 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417166 S 112 1 0 "" NA18547 nsv9371 16 17562115 17564293 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22323 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA07048 nsv469688 16 17593034 17760316 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649619 M 265 0 0 Samples from several populations that are part of the HapMap project. "" nsv9372 16 17697179 17701591 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25979 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18517 nsv833155 16 17727512 17893402 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452361 S 95 1 0 "" nsv833156 16 17763988 17969946 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452362 S 95 0 1 "" nsv520968 16 17841806 17850104 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697713 S 2026 0 1 "" nsv833157 16 17956664 18092692 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452363 S 95 0 1 "" nsv519005 16 17982201 18002188 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696474 S 2026 0 1 "" dgv821e1 16 18000444 18293192 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv16445,essv12330 M 271 0 0 "" NA19138,NA19139 nsv9373 16 18010196 18016686 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22014,nssv21022,nssv22801,nssv22488 M 31 1 3 Samples from several populations that are part of the HapMap project. "" NA10839,NA18564,NA18942,NA18975 dgv822e1 16 18036757 18771465 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv22539,essv10935,essv22988,essv2799,essv1876,essv4132,essv11104,essv327,essv3478,essv6747,essv7538,essv4273,essv2087,essv16014,essv1681 M 271 0 0 "" NA07348,NA07357,NA18501,NA18545,NA18555,NA18562,NA18603,NA18949,NA18971,NA18976,NA18987,NA18992,NA19209,NA19211 dgv823e1 16 18036757 19066807 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv202,essv3875 M 271 0 0 "" NA18994 nsv833158 16 18036762 18186964 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452364,nssv1452365 M 95 2 0 "" nsv510680 16 18067930 18157932 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622704,nssv618934 M 4 0 2 "" NA10860,NA18994 dgv824e1 16 18108163 18577489 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv3192,essv6575 M 271 0 0 "" NA18621,NA18974 nsv9374 16 18150515 18153161 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25999 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18517 nsv517002 16 18163425 18174650 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv662196,nssv664026,nssv669376,nssv681765,nssv659220,nssv655585,nssv677271,nssv675762,nssv686949,nssv659174,nssv652461,nssv678789,nssv680261,nssv679196,nssv676175,nssv692327,nssv659852,nssv656040,nssv653598,nssv668878,nssv676051,nssv666177,nssv659775,nssv673253,nssv661015,nssv670631,nssv660782,nssv662466,nssv654474,nssv657493,nssv653645,nssv671932,nssv666553,nssv660624,nssv684689,nssv656277,nssv675633 M 2026 0 37 "" esv34419 16 18171600 18990722 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6990216,essv6978265,essv6986578,essv6986579 M 771 1 0 "" NA18994 nsv9375 16 18199806 18201680 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21966 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA10863 nsv510414 16 18202265 18208265 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624174,nssv621435 M 4 0 2 "" NA15510,NA18994 nsv433436 16 18206435 18373425 CNV Gain Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463317 S 9 1 0 Samples from several populations that are part of the HapMap project. "" NA19240 nsv509601 16 18286484 18423272 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619682 S 4 1 0 "" NA10860 nsv1751 16 18309681 18385113 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2137 S 9 0 1 "" NA18555 nsv9376 16 18340304 18357495 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27762,nssv22830 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA10839,NA19221 nsv833160 16 18362910 18589725 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452370,nssv1452369,nssv1452371,nssv1452379,nssv1452380,nssv1452375,nssv1452374,nssv1452376,nssv1452372,nssv1452377,nssv1452368,nssv1452367,nssv1452373,nssv1452366,nssv1452378 M 95 15 0 "" nsv9377 16 18380411 18391803 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21052,nssv20771 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA12872,NA18942 nsv9378 16 18397373 18428057 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27769,nssv22695,nssv23563,nssv23948,nssv22966,nssv23110,nssv23211,nssv25871 M 31 1 7 Samples from several populations that are part of the HapMap project. "" NA18537,NA18552,NA18972,NA18980,NA19007,NA19144,NA19173,NA19221 essv8865 16 18405310 18577489 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18508 dgv825e1 16 18405310 18771465 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv7322,essv444 M 271 0 0 "" NA18570,NA18952 nsv9379 16 18443823 18447223 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23591 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19173 nsv442712 16 18501901 18585612 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv9381 16 18507917 18512148 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26449 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18502 nsv469598 16 18569812 18747491 CNV Gain Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649713 M 265 1 0 Samples from several populations that are part of the HapMap project. "" nsv9382 16 18574371 18576437 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23138,nssv22353,nssv23239 M 31 0 3 Samples from several populations that are part of the HapMap project. "" NA07048,NA18537,NA19007 esv33907 16 18577196 18687445 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101592,essv101248,essv93943,essv100993,essv95200,essv94686,essv94109,essv97961,essv95537,essv93103,essv95319,essv97431,essv101623,essv95812,essv94637,essv98993,essv92904,essv92757,essv93650,essv96241,essv96576,essv96040,essv93531,essv93190,essv94849,essv92619,essv96501,essv97791,essv100141,essv100468,essv100368,essv98516 M 51 0 32 "" 21603,21618,21634,21693,21721,21791,21802,21837,21847,21863,21872,21879,21909,21911,21932,21938,21939,21944,21972,22007,22011,22127,22128,22170,22231,22233,22261,22278,22286,22298,22300,22352 nsv833161 16 18613820 18801926 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452381 S 95 0 1 "" nsv9383 16 18634215 18641431 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20225 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA10847 nsv9384 16 18661835 18663323 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26675 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18860 nsv1752 16 18715597 18758579 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5592,nssv4198,nssv6661 M 9 0 3 "" NA12156,NA12878,NA19129 nsv1753 16 18751518 18784350 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1298 S 9 1 0 "" NA19240 nsv9385 16 18806658 18825354 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22518 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18564 nsv9386 16 18837819 18850180 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22548 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18564 nsv817724 16 18856267 18968449 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417673 S 112 1 0 "" NA18994 nsv1754 16 18890521 18901688 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7237 S 9 1 0 "" NA12156 nsv9387 16 18920630 18924810 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23166 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19007 nsv509603 16 18974548 18974548 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623689 S 4 1 0 "" NA18994 nsv103187 16 18996428 19004770 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv121765 M 24 "" nsv833162 16 19163211 19355377 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452382 S 95 0 1 "" nsv833163 16 19376335 19547539 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452383 S 95 1 0 "" nsv520441 16 19493489 19516296 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697422 S 2026 0 1 "" nsv1756 16 19511205 19543572 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7238,nssv2138 M 9 2 0 "" NA12156,NA18555 nsv103121 16 19776589 19779910 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv121699 M 24 "" esv32696 16 19841415 19842073 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv94712 S 51 1 0 "" 21791 nsv1757 16 19848625 19887830 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4199 S 9 0 1 "" NA12878 dgv47n17 16 19851864 19886835 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437804,nsv437803 M 60 0 2 "" NA19139,NA19205 nsv9388 16 19852680 19879410 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23432,nssv24095 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA12155,NA12740 esv33232 16 19853027 19867380 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101615,essv101135,essv101098,essv98252,essv93030,essv96093,essv97079,essv94935,essv92538,essv97626 M 51 0 10 "" 21603,21618,21693,21772,21863,22007,22075,22231,22233,22278 nsv442714 16 19853151 19874863 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" esv2750508 16 19899518 19900195 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98273 S 51 0 1 "" 21772 nsv1758 16 20050109 20085117 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4200 S 9 1 0 "" NA12878 nsv507807 16 20148401 20154401 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623206,nssv617910,nssv619162,nssv620600 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv1759 16 20258087 20292269 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1299 S 9 1 0 "" NA19240 nsv510415 16 20347380 20353380 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624175 S 4 0 1 "" NA18994 dgv826e1 16 20352824 20454385 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv10511,essv7895,essv13238 M 271 0 0 "" NA19131,NA19143,NA19239 esv1311 16 20352824 20506848 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 "" nsv437805 16 20360002 20453390 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467686 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19202 nsv7279 16 20384676 20478327 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4201,nssv9312,nssv9311 M 9 0 0 "" NA12878,NA18517 nsv525413 16 20386225 20408047 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701537 S 2026 0 1 "" dgv346n27 16 20386225 20437735 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv457443,nsv457442 M 1557 0 2 "" HGDP00462,HGDP00932 dgv827e1 16 20389173 20455835 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv7972,essv14952,essv7998,essv14659,essv13295 M 271 0 0 "" NA19132,NA19145,NA19202,NA19221,NA19240 nsv516604 16 20391230 20391462 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv676418,nssv669505 M 2026 0 2 "" dgv48n17 16 20392371 20453390 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437806,nsv437807 M 60 0 2 "" NA19132,NA19205 dgv828e1 16 20395870 20478276 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv8705,essv9525 M 271 0 0 "" NA19200,NA19223 nsv1760 16 20400262 20466261 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1300 S 9 0 1 "" NA19240 nsv9389 16 20403144 20405192 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26019 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18517 nsv9390 16 20406711 20420055 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25116,nssv26039 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18504,NA18517 essv7941 16 20407950 20438354 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19203 nsv9392 16 20419728 20441638 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27776,nssv26248,nssv25141,nssv25007 M 31 0 4 Samples from several populations that are part of the HapMap project. "" NA18504,NA19132,NA19221,NA19240 nsv442715 16 20420282 20440540 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv829e1 16 20420371 20455835 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv11361,essv11067 M 271 0 0 "" NA18858,NA19138 nsv516993 16 20421223 20437735 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv673616,nssv682924,nssv662197,nssv652462,nssv676740,nssv676930,nssv655302,nssv675146,nssv651741,nssv686220,nssv666341,nssv652624,nssv659530,nssv693933,nssv665494,nssv654569,nssv654445,nssv677319,nssv671773,nssv692871,nssv672860,nssv687958,nssv690397,nssv689018,nssv653332,nssv668587,nssv664309,nssv652199,nssv666896,nssv663071,nssv682346,nssv692258,nssv658322,nssv666997,nssv660684,nssv690152,nssv653571,nssv654724,nssv662014,nssv690734,nssv687443,nssv684712,nssv659741,nssv685557,nssv668292,nssv691903,nssv690443,nssv693059 M 2026 0 48 "" nsv817725 16 20421223 20437735 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416976,nssv1416884,nssv1418219,nssv1416885,nssv1418220 M 112 0 5 "" NA19138,NA19143,NA19145,NA19239,NA19240 essv15192 16 20423139 20438354 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18504 essv5757 16 20437119 20506848 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18540 nsv9393 16 20441310 20452824 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25196 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18504 nsv833164 16 20442292 20598180 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452384 S 95 0 1 "" nsv442394 16 20453641 20464610 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv521570 16 20471891 20528494 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698186 S 2026 1 0 "" nsv103483 16 20485580 20485580 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv122061 M 24 "" nsv507808 16 20488228 20494228 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620601 S 4 1 0 "" NA15510 nsv509604 16 20496981 20551176 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623690 S 4 1 0 "" NA18994 nsv1761 16 20532731 20567367 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4202 S 9 1 0 "" NA12878 nsv516605 16 20579676 20580129 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv671088,nssv669506,nssv656395 M 2026 0 3 "" nsv507809 16 20587987 20593987 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623207 S 4 1 0 "" NA18994 nsv833165 16 20637041 20805219 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452385 S 95 0 1 "" nsv457444 16 20836726 21079374 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534635 S 1557 0 1 "" 1780862082_A nsv833166 16 20943307 21139458 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452386,nssv1452400,nssv1452401,nssv1452399,nssv1452398,nssv1452402,nssv1452412,nssv1452403,nssv1452405,nssv1452404,nssv1452406,nssv1452411,nssv1452410,nssv1452409,nssv1452416,nssv1452413,nssv1452414,nssv1452394,nssv1452387,nssv1452390,nssv1452397,nssv1452389,nssv1452415,nssv1452388,nssv1452396,nssv1452408,nssv1452393,nssv1452392,nssv1452391,nssv1452395,nssv1452407 M 95 4 27 "" esv33636 16 21091793 21091924 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101136,essv94511 M 51 0 2 "" 21618,21932 esv33128 16 21091793 21092910 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv95435 S 51 0 1 "" 21847 nsv509605 16 21115437 21145627 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621022,nssv619683,nssv618114 M 4 3 0 "" CHM,NA10860,NA15510 nsv1762 16 21117421 21146000 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4203,nssv2950 M 9 2 0 "" NA12878,NA18555 nsv524978 16 21130097 21136776 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701007 S 2026 0 1 "" nsv103721 16 21146569 21146569 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv122299 M 24 "" esv34235 16 21195086 21905052 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6986827,essv6979248 M 771 1 0 "" NA18517 nsv526247 16 21211648 21234774 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702519 S 2026 0 1 "" dgv830e1 16 21212772 21856623 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1865,essv2390,essv18187,essv20260,essv24851,essv11963,essv17363,essv8138,essv12225,essv20072,essv15108,essv12304,essv13632,essv16698,essv14772,essv19958,essv20994,essv23897,essv16202,essv19579,essv17772,essv18705,esv814,essv18942,essv16058,essv2288,essv5289 M 271 0 0 "" NA06991,NA07000,NA07048,NA10831,NA12005,NA12057,NA12144,NA12813,NA12814,NA12864,NA12874,NA18501,NA18517,NA18624,NA18966,NA18976,NA19101,NA19127,NA19129,NA19138,NA19142,NA19159,NA19161,NA19206 nsv433437 16 21273056 21484934 CNV Gain Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463318 S 9 1 0 Samples from several populations that are part of the HapMap project. "" NA12156 nsv9394 16 21320606 21323839 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22724,nssv23975,nssv23194,nssv23619,nssv22607,nssv25892 M 31 6 0 Samples from several populations that are part of the HapMap project. "" NA18552,NA18563,NA18972,NA19007,NA19144,NA19173 nsv433438 16 21332845 21837178 CNV Gain Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463319 S 9 1 0 Samples from several populations that are part of the HapMap project. "" NA18517 nsv9395 16 21335940 21342398 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27783 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19221 nsv9396 16 21369629 21371765 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26059 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18517 esv33799 16 21382569 21501102 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv95087,essv94708,essv100520 M 51 0 3 "" 21721,21791,22298 nsv9397 16 21394254 21717876 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21842,nssv27790,nssv22608,nssv22637,nssv22995,nssv26078,nssv24032,nssv24122,nssv25221,nssv25913,nssv26687,nssv25934,nssv23647,nssv22383,nssv22578,nssv20255,nssv22859,nssv20801,nssv20200,nssv22783,nssv26266 M 31 18 1 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10847,NA12155,NA12802,NA12872,NA18504,NA18517,NA18552,NA18563,NA18564,NA18860,NA18972,NA18980,NA19132,NA19144,NA19173,NA19221 nsv509606 16 21406662 21487224 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621023 S 4 1 0 "" NA15510 essv17266 16 21408063 21559206 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18503 dgv831e1 16 21408063 21698983 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv22977,essv7389,essv12589,essv7534,essv11241,essv7826,essv9076,essv24781,essv16855,essv15236,essv18104,essv15624,essv9746,essv20589,essv16150,essv4957 M 271 0 0 "" NA07056,NA07357,NA10860,NA11993,NA18545,NA18558,NA18623,NA18637,NA18912,NA18913,NA19094,NA19098,NA19100,NA19132,NA19204,NA19205 dgv832e1 16 21408063 21833734 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv22295,essv16995,essv22665,essv4426,essv860,essv10054,essv9232,essv22911,essv24904,essv11717,essv20402,essv8812,essv11517,essv24696,essv4082,essv19460,essv6276,essv24492,essv2092,essv3240,essv25000,essv14499,essv18248,essv17107,essv6019,essv3364,essv14300,essv12671,essv23588,essv15862,essv344 M 271 0 0 "" NA06985,NA06994,NA10830,NA10839,NA10846,NA11829,NA11840,NA12006,NA12752,NA12760,NA12802,NA18500,NA18508,NA18571,NA18573,NA18635,NA18636,NA18945,NA18949,NA18971,NA18974,NA19000,NA19099,NA19128,NA19144,NA19154,NA19171,NA19173,NA19194,NA19202,NA19223 nsv442716 16 21422575 21498841 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" esv2751551 16 21441800 21647800 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6988497,essv6982155,essv6982156 M 771 1 0 "" BEC_397 esv34544 16 21441800 21905052 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6990206,essv6978192,essv6978191 M 771 1 0 "" NA18976 esv2751552 16 21441805 21647775 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6983235,essv6983236,essv6989761 M 771 0 1 "" BEC_558 dgv116e55 16 21441805 21808808 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv2751554,esv2751553 M 771 0 2 "" BEC_541,BEC_792 nsv1763 16 21442161 21480215 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7239 S 9 0 1 "" NA12156 nsv7280 16 21464094 22618248 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4205,nssv9525,nssv10950,nssv10949,nssv9526,nssv4204,nssv9313,nssv6662,nssv1301,nssv6663,nssv10085,nssv5594,nssv5593 M 9 0 0 "" NA12156,NA12878,NA15510,NA18507,NA18517,NA18956,NA19129,NA19240 dgv347n27 16 21482719 21647775 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv457446,nsv457445,nsv457450 M 1557 3 0 "" 1780854129_A,1782681142_A,NINDS_116 dgv348n27 16 21482719 21647775 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv457447,nsv457448,nsv457458,nsv457449,nsv457451 M 1557 0 5 "" 1780854463_A,1780862001_A,1780862399_A,HGDP00697,HGDP00727 nsv517713 16 21482719 21647775 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694215,nssv684474,nssv652928,nssv702216 M 2026 1 3 "" nsv817726 16 21482719 21647775 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416502 S 112 1 0 "" NA18517 dgv3n1 16 21485316 22595351 OTHER Inversion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis nsv141,nsv140 M 1 0 0 "" NA15510 nsv511047 16 21487224 22432321 OTHER Inversion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622416,nssv624350 M 4 0 0 "" NA10860,NA18994 dgv2n29 16 21509119 21691210 CNV Loss Locke et al 2006 16826518 BAC_aCGH nsv469634,nsv469872 M 265 0 13 "" dgv833e1 16 21509128 21698983 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv4477,essv6307,essv13874 M 271 0 0 "" NA18552,NA18609,NA18854 essv3313 16 21527771 21647775 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18948 nsv457460 16 21573817 21647775 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534645 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00700 nsv833167 16 21614282 21787052 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452417 S 95 1 0 "" nsv1764 16 21682239 22544204 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9527,nssv5595 M 9 0 2 "" NA18507,NA19129 nsv9398 16 21753014 21756290 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23675,nssv22580,nssv25985,nssv22667,nssv24059,nssv22812,nssv23222 M 31 7 0 Samples from several populations that are part of the HapMap project. "" NA18552,NA18563,NA18853,NA18972,NA19007,NA19144,NA19173 nsv9399 16 21768405 21774676 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27797 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19221 nsv9400 16 21780451 21781630 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22841 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18552 nsv9401 16 21826045 21851618 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22638 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18564 nsv519813 16 21856623 22331199 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695314,nssv658877,nssv695061,nssv695062,nssv697409,nssv679842,nssv700459,nssv702569,nssv696247,nssv699427,nssv695497 M 2026 3 8 "" nsv469628 16 21973871 22123888 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649553 M 265 1 0 Samples from several populations that are part of the HapMap project. "" nsv469818 16 22030947 22180948 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649839 M 265 0 0 Samples from several populations that are part of the HapMap project. "" nsv9403 16 22107905 22118850 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27804 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19221 dgv834e1 16 22201625 22679810 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv21062,esv550 M 271 0 0 "" NA06991 nsv9404 16 22292157 22294355 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22668,nssv26698 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA18564,NA18860 dgv835e1 16 22313312 22679810 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv18669,essv2549,essv1825,essv2021,essv7393,essv19952,essv22591,essv903,essv2761,essv2529,essv8608,essv7558,essv24648,essv13659,essv13608,essv2882,essv20246,essv15117,essv20099,essv18460,essv21685,essv8846,essv20438,essv76,essv17333,essv11691,essv16447,essv16713,essv289,essv16233,essv4418,essv9914,essv17006,essv22320,essv5103,essv14744,essv17121,essv18205,essv12290,essv19390,essv24856,essv22880,essv13093,essv25190,essv17828,essv24522,essv24924,essv15276,essv2670,essv20354,essv23964,essv25011,essv12860,essv15359,essv19570,essv15669,essv15473,essv21504,essv9748,essv21530,essv12727,essv18698,essv15883,essv4594,essv6009,essv6661,essv14557,essv432,essv11238,essv12184,essv18978,essv16063,essv22636,essv23598,essv5285,essv1118,essv2300,essv23101,essv20111,essv347,essv3229 M 271 0 0 "" NA06985,NA06994,NA07000,NA07048,NA07345,NA07348,NA10830,NA10831,NA10839,NA11829,NA11832,NA11840,NA12003,NA12005,NA12006,NA12043,NA12056,NA12057,NA12144,NA12236,NA12248,NA12752,NA12760,NA12802,NA12813,NA12814,NA12864,NA12873,NA12874,NA18501,NA18505,NA18508,NA18524,NA18545,NA18571,NA18573,NA18577,NA18608,NA18623,NA18624,NA18852,NA18856,NA18862,NA18912,NA18913,NA18914,NA18949,NA18952,NA18953,NA18964,NA18966,NA18967,NA18971,NA18974,NA18976,NA18978,NA18991,NA19000,NA19003,NA19094,NA19101,NA19119,NA19120,NA19127,NA19129,NA19138,NA19139,NA19142,NA19144,NA19145,NA19154,NA19159,NA19161,NA19171,NA19202,NA19204,NA19223,NA19239 nsv433439 16 22351124 22516508 CNV Gain Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463320 S 9 1 0 Samples from several populations that are part of the HapMap project. "" NA19240 nsv9405 16 22355697 22455708 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23250,nssv27811,nssv22870,nssv26097,nssv22610,nssv22697,nssv22696,nssv26005,nssv24086 M 31 8 1 Samples from several populations that are part of the HapMap project. "" NA18517,NA18552,NA18563,NA18564,NA18853,NA18972,NA19007,NA19144,NA19221 esv32980 16 22355698 22633240 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv95110,essv94715,essv95864,essv100529,essv100344 M 51 0 5 "" 21721,21791,21911,22298,22300 nsv833168 16 22371369 22506131 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452418,nssv1452420,nssv1452419 M 95 1 2 "" nsv469882 16 22387835 22593523 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649903 M 265 0 11 Samples from several populations that are part of the HapMap project. "" nsv471691 16 22387836 22593523 CNV Gain+Loss Sharp et al 2005 15918152 BAC_aCGH,FISH Eichler Segmental Duplication BAC array nssv551141,nssv551146,nssv551156,nssv551147,nssv551145,nssv551142,nssv551139,nssv551143,nssv551157,nssv551140,nssv551149,nssv551148,nssv551155,nssv551151,nssv551153,nssv551150,nssv551154,nssv551152,nssv551144 M 48 18 1 "" JK1051,JK1058,JK1061,JK1688,JK776,NA10469,NA10470,NA10471,NA10492,NA10493,NA10494,NA10495,NA10971,NA11323,NA11521,NA17014,NA17017,NA17052,P86GA nsv433440 16 22397402 22491228 CNV Gain Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463321 S 9 1 0 Samples from several populations that are part of the HapMap project. "" NA18517 dgv33n68 16 22403344 22614048 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH nsv833169,nsv833172 M 95 0 7 "" nsv833171 16 22421632 22589139 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452428,nssv1452423,nssv1452424,nssv1452422,nssv1452426,nssv1452425,nssv1452427,nssv1452429 M 95 1 7 "" nsv471386 16 22432345 22455329 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548129,nssv548131,nssv548130 M 3 "" nsv9406 16 22455152 22623716 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23023,nssv24148,nssv26739,nssv26116,nssv20230,nssv24113,nssv21872,nssv22443,nssv22888,nssv20285,nssv25246,nssv27818,nssv26025,nssv22899,nssv22725,nssv22726,nssv20831,nssv25032,nssv23733 M 31 18 1 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10847,NA12155,NA12802,NA12872,NA18504,NA18517,NA18552,NA18563,NA18564,NA18860,NA18972,NA18980,NA19144,NA19173,NA19221,NA19240 nsv442717 16 22465433 22612022 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv836e1 16 22466298 22631165 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv22287,essv17874,essv5866,essv20828,essv20449,essv13827,essv20506,essv18808,essv5946,essv1704 M 271 0 0 "" NA06994,NA10855,NA10857,NA12248,NA12716,NA12762,NA18555,NA18577,NA18853,NA18968 dgv837e1 16 22503592 22679810 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv3083,essv10492,essv10303,essv22963,essv8432,essv3959,essv20189,essv12491,essv2485,essv6998,essv23229,essv6352,essv6170,essv23499,essv3346,essv13737,essv19609,essv12559,essv10070,essv8768,essv8285,essv24768,essv21757,essv4128,essv12378,essv3770,essv7827,essv18365,essv13200,essv14186,essv4460,essv14596,essv10999,essv16885,essv10224,essv6748,essv16115,essv21976,essv24070,essv1759,essv8241,essv14453,essv16532,essv10419,essv14343,essv5306,essv23973,essv20807,essv13449,essv4067,essv6259,essv11540,essv10134,essv4973,essv9411,essv13891,essv10688,essv11167,essv10537,essv24589,essv13003,essv4613,essv9115,essv18145,essv9753,essv9087,essv14961,essv18344,essv10831,essv16751,essv10907,essv18282,essv11762,essv17081,essv23830,essv3793,essv10804,essv15566,essv9251,essv23204,essv20557,essv21462,essv12642,essv1954,essv14126,essv17267,essv22201 M 271 0 0 "" NA07022,NA07029,NA07034,NA07056,NA07357,NA10846,NA10859,NA10860,NA11832,NA11992,NA11993,NA11994,NA11995,NA12044,NA12146,NA12155,NA12156,NA12239,NA12249,NA12716,NA12717,NA18500,NA18503,NA18504,NA18506,NA18515,NA18516,NA18523,NA18532,NA18552,NA18555,NA18558,NA18562,NA18563,NA18594,NA18609,NA18612,NA18635,NA18636,NA18637,NA18854,NA18855,NA18859,NA18860,NA18861,NA18863,NA18870,NA18871,NA18872,NA18943,NA18945,NA18959,NA18961,NA18969,NA18970,NA18997,NA18999,NA19092,NA19093,NA19098,NA19099,NA19100,NA19102,NA19103,NA19116,NA19128,NA19130,NA19132,NA19137,NA19140,NA19143,NA19152,NA19153,NA19172,NA19173,NA19192,NA19194,NA19201,NA19205,NA19207,NA19208,NA19209,NA19210,NA19211,NA19222,NA19238,NA19240 esv2422454 16 22513379 22620282 CNV Deletion Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161524 S 181 0 1 "" ND03971 nsv1765 16 22530626 22542368 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7240 S 9 1 0 "" NA12156 dgv838e1 16 22533137 22598822 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv4324,essv1811 M 271 0 0 "" NA18564,NA18971 dgv839e1 16 22533137 22631165 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv5697,essv3632,essv6054,essv925,essv517 M 271 0 0 "" NA18550,NA18603,NA18949,NA18952,NA18966 nsv821683 16 22533886 22670853 CNV Gain Sebat_et_al_2004 15273396 ROMA Custom Nimblegen photoprint 85000 probe ROMA oligo array nssv1421315,nssv1421316 M 31 2 0 "" dgv349n27 16 22581356 22685278 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv457465,nsv457464,nsv457461,nsv457462 M 1557 4 0 "" HGDP00543,HGDP00544,HGDP00547,HGDP00664 dgv350n27 16 22620480 22685278 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv457478,nsv457469,nsv457466,nsv457472,nsv457467,nsv457470,nsv457477,nsv457476,nsv457468,nsv457473,nsv457475 M 1557 11 0 "" HGDP00542,HGDP00545,HGDP00548,HGDP00550,HGDP00554,HGDP00556,HGDP00655,HGDP00656,HGDP00662,HGDP00787,HGDP01027 nsv817727 16 22638277 22644799 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417308 S 112 0 1 "" NA18608 nsv519620 16 22643850 22646184 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv657096,nssv663278,nssv696278 M 2026 0 3 "" nsv833173 16 22743613 22893177 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452436 S 95 0 1 "" nsv103335 16 22816476 22816752 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv121913 M 24 "" esv33672 16 22952751 22953475 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv95191,essv95568,essv95542,essv93086,essv95389,essv101750,essv92990,essv96177,essv97224,essv96047,essv93392,essv92553,essv100523,essv98364 M 51 0 14 "" 21721,21841,21847,21863,21872,21909,21939,22007,22075,22127,22170,22233,22298,22352 esv33565 16 22955581 22956766 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98785,essv101210,essv95225,essv94840,essv95657,essv95558,essv93048,essv95280,essv101661,essv92962,essv96142,essv97244,essv96019,essv93266,essv95043,essv92544,essv100505,essv100340,essv98368 M 51 0 19 "" 21606,21618,21721,21791,21841,21847,21863,21872,21909,21939,22007,22075,22127,22170,22231,22233,22298,22300,22352 nsv521703 16 22993133 23022350 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698326 S 2026 1 0 "" nsv1767 16 23136454 23167121 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5596 S 9 1 0 "" NA19129 nsv1768 16 23369108 23401526 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6664 S 9 1 0 "" NA12156 nsv103012 16 23436037 23436349 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv121590 M 24 "" nsv510681 16 23634796 23691469 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617425 S 4 0 1 "" CHM nsv103660 16 23784304 23784363 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv122238 M 24 "" nsv103651 16 23794319 23794368 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv122229 M 24 "" nsv527537 16 23975709 23975815 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703998 S 2026 0 1 "" nsv833174 16 23996675 24177670 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452438,nssv1452437,nssv1452439,nssv1452444,nssv1452443,nssv1452448,nssv1452441,nssv1452440,nssv1452449,nssv1452442,nssv1452446,nssv1452445,nssv1452447 M 95 13 0 "" nsv523144 16 24426118 24439219 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698851 S 2026 1 0 "" nsv1769 16 24433061 24467297 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5597 S 9 0 1 "" NA19129 nsv528111 16 24504517 24504671 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704653 S 2026 0 1 "" nsv833175 16 24765392 24999329 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452450,nssv1452451 M 95 0 2 "" nsv509607 16 24785030 24847349 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619684 S 4 1 0 "" NA10860 dgv840e1 16 24850896 25094479 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv839,essv10905,essv11173 M 271 0 0 "" NA19209,NA19211 nsv520552 16 24957210 24957265 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv680393,nssv672467 M 2026 0 2 "" essv10614 16 24976087 25044753 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19211 esv34994 16 24976087 25044753 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6986028,essv6980579 M 771 1 0 "" NA19211 essv10712 16 24989785 25035978 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18508 nsv833176 16 25198484 25401079 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452452,nssv1452453 M 95 0 2 "" nsv510682 16 25231176 25252417 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622705 S 4 0 1 "" NA18994 nsv833177 16 25236644 25272092 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452459,nssv1452458,nssv1452460,nssv1452456,nssv1452462,nssv1452455,nssv1452454,nssv1452461,nssv1452457 M 95 0 9 "" nsv519089 16 25237330 25261587 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694305 S 2026 0 1 "" nsv1770 16 25260758 25268897 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5598 S 9 0 1 "" NA19129 nsv527775 16 25351789 25352058 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704266 S 2026 0 1 "" nsv507810 16 25406874 25412874 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617911 S 4 1 0 "" CHM dgv841e1 16 25532212 25718755 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv915,esv399 M 271 0 0 "" NA19000 nsv9407 16 25659221 25661723 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23760 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19173 nsv521162 16 25779528 25781730 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697821 S 2026 1 0 "" dgv164n21 16 25857681 25928335 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv524942,nsv523821 M 2026 0 2 "" nsv519437 16 25861972 25862104 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696853 S 2026 0 1 "" nsv507811 16 26010096 26016096 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619164,nssv623208 M 4 2 0 "" NA10860,NA18994 nsv1771 16 26065714 26116844 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4206,nssv5599,nssv7241,nssv1302 M 9 4 0 "" NA12156,NA12878,NA19129,NA19240 nsv522735 16 26105031 26114496 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698369 S 2026 0 1 "" nsv519054 16 26229587 26231369 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696525 S 2026 0 1 "" nsv833178 16 26366610 26527848 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452463 S 95 1 0 "" nsv527768 16 26564454 26567931 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704257 S 2026 0 1 "" nsv521931 16 26570108 26575167 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694700 S 2026 0 1 "" nsv1772 16 26630445 26663071 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10086 S 9 1 0 "" NA18956 nsv520822 16 26802777 26808047 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697633 S 2026 0 1 "" nsv524647 16 26806143 26808047 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700613 S 2026 0 1 "" nsv510416 16 26818452 26824452 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622260,nssv621436 M 4 0 2 "" NA10860,NA15510 nsv103407 16 26824422 26826998 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv121985 M 24 "" nsv103835 16 27057376 27057376 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv122413 M 24 "" nsv524872 16 27205294 27205537 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700877 S 2026 0 1 "" nsv516053 16 27248560 27292232 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv678966,nssv672657,nssv670202,nssv690601,nssv673748,nssv657660,nssv663817,nssv670645,nssv685438,nssv692670,nssv665924,nssv658712,nssv683708,nssv683643,nssv685116,nssv688331,nssv666251,nssv680201,nssv660649,nssv661272,nssv665894,nssv705647,nssv683337,nssv690816,nssv689335,nssv670713,nssv655179,nssv676850,nssv656053,nssv661779,nssv703842,nssv678985 M 2026 1 31 "" nsv833179 16 27260185 27415007 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452464 S 95 0 1 "" nsv1773 16 27331719 27349351 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5600 S 9 1 0 "" NA19129 esv2751555 16 27436681 27627807 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6987424,essv6983808,essv6983809,essv6983810 M 771 1 0 "" BEC_629 nsv1774 16 27491679 27499577 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10087 S 9 1 0 "" NA18956 nsv103176 16 27760868 27760868 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv121754 M 24 "" nsv103057 16 27760868 27760937 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv121635 M 24 "" nsv103097 16 27760923 27761027 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv121675 M 24 "" nsv103125 16 27760958 27761027 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv121703 M 24 "" nsv469663 16 28012682 28171002 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649592 M 265 0 3 Samples from several populations that are part of the HapMap project. "" nsv9408 16 28017595 28019205 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26284 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19132 nsv9409 16 28043576 28045124 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26750 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18860 dgv842e1 16 28082639 29058054 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv16472,essv16664,esv203,essv13896 M 271 0 0 "" NA18854,NA19139,NA19142 nsv507812 16 28087081 28093081 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619165,nssv623209 M 4 2 0 "" NA10860,NA18994 nsv103104 16 28108442 28116224 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv121682 M 24 "" nsv525423 16 28109841 28174109 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701547 S 2026 1 0 "" nsv9410 16 28118122 28129108 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23787,nssv21996 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA10863,NA19173 dgv843e1 16 28140185 28751472 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv17496,essv651,essv9620 M 271 0 0 "" NA12762,NA18975,NA19141 nsv526174 16 28173657 28230971 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702435 S 2026 1 0 "" nsv9411 16 28187027 28196598 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27855 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19221 nsv9412 16 28196598 28206342 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22026 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA10863 nsv516054 16 28212498 28240912 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv666644,nssv677573,nssv659114,nssv691224,nssv666821,nssv691804,nssv682700,nssv689307,nssv659070,nssv688005,nssv691157,nssv672658,nssv689019,nssv665895,nssv681463,nssv674455,nssv684274,nssv692935,nssv670779 M 2026 0 19 "" nsv833180 16 28264979 28492987 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452467,nssv1452466,nssv1452465 M 95 0 3 "" nsv9414 16 28281962 28368612 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27869,nssv27862,nssv20260,nssv22134,nssv24139,nssv24174,nssv21902,nssv23875,nssv22044,nssv26135,nssv22917,nssv22056,nssv23902,nssv22074,nssv26761,nssv22473,nssv22928,nssv23278,nssv23267,nssv23814,nssv22784,nssv25057,nssv23295,nssv25271 M 31 7 13 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10863,NA11830,NA12155,NA12802,NA18504,NA18517,NA18537,NA18552,NA18563,NA18860,NA18975,NA19007,NA19144,NA19173,NA19221,NA19240 nsv509608 16 28368619 28551717 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623692,nssv623693 M 4 1 0 "" NA18994 nsv9415 16 28387703 28417781 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27876 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19221 nsv103376 16 28397145 28397439 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv121954 M 24 "" nsv833182 16 28456877 28590949 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452470,nssv1452482,nssv1452480,nssv1452481,nssv1452484,nssv1452483,nssv1452485,nssv1452468,nssv1452469,nssv1452486,nssv1452490,nssv1452478,nssv1452479,nssv1452488,nssv1452487,nssv1452476,nssv1452477,nssv1452475,nssv1452472,nssv1452489,nssv1452471,nssv1452474,nssv1452473 M 95 23 0 "" nsv9416 16 28507328 28535572 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22785,nssv23306,nssv26463,nssv22814,nssv21142,nssv22503,nssv26772,nssv27883,nssv21112,nssv20315,nssv23460,nssv25296,nssv22946 M 31 4 7 Samples from several populations that are part of the HapMap project. "" NA07048,NA10839,NA10847,NA12740,NA18502,NA18504,NA18564,NA18860,NA18942,NA19007,NA19221 dgv12n14 16 28511144 28526810 CNV Loss Cooper et al 2008 18776910 SNP_array nsv433300,nsv433298 M 9 0 2 "" NA12878,NA19240 nsv1775 16 28514267 28538392 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6665,nssv9528,nssv9314 M 9 3 0 "" NA12156,NA18507,NA18517 nsv433301 16 28515988 28528253 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463182 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA19129 nsv433302 16 28521466 28528253 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463183 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA18555 esv33847 16 28523171 28529968 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98703,essv93155,essv97261,essv93405 M 51 4 0 "" 21606,21863,22075,22170 dgv13n14 16 28549743 28708848 CNV Gain Cooper et al 2008 18776910 SNP_array nsv433442,nsv433441 M 9 2 0 "" NA18555,NA19240 nsv1776 16 28569859 28715781 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2139 S 9 0 1 "" NA18555 nsv9417 16 28586215 28603652 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22164 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18975 dgv844e1 16 28590949 28751472 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv19996,essv7073,essv24809 M 271 0 0 "" NA07048,NA10860,NA18537 nsv510683 16 28600304 28670993 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622706 S 4 0 1 "" NA18994 nsv9418 16 28602258 28604354 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23929 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA11830 nsv9419 16 28604445 28670974 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25082,nssv23956,nssv22116,nssv26783,nssv24165,nssv26154,nssv27895,nssv23334,nssv22224,nssv20861,nssv22533,nssv22813,nssv21172,nssv20290,nssv23841,nssv23004,nssv25321,nssv21932,nssv24200,nssv23323,nssv23351,nssv22957,nssv27889,nssv22194,nssv22975 M 31 9 13 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10863,NA11830,NA12155,NA12802,NA12872,NA18504,NA18517,NA18537,NA18552,NA18563,NA18860,NA18942,NA18975,NA19007,NA19144,NA19173,NA19221,NA19240 nsv9420 16 28698207 28732323 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22254,nssv24013 M 31 1 1 Samples from several populations that are part of the HapMap project. "" NA11830,NA18975 nsv9421 16 28732323 28739358 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20345 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA10847 nsv518648 16 28745016 28950951 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696097 S 2026 0 1 "" nsv519100 16 28745016 28950951 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694306 S 2026 1 0 "" nsv457480 16 28876981 28950951 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534663 S 1557 1 0 "" 1780862078_A esv33811 16 28882516 28892650 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98758,essv97119 M 51 0 2 "" 21606,22075 esv2750677 16 28905709 28907873 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97264 S 51 0 1 "" 22075 esv33515 16 28944132 28944272 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv95480 S 51 1 0 "" 21847 nsv9422 16 28978132 28992229 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22284 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18975 nsv103421 16 29010895 29012713 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv121999 M 24 "" nsv525812 16 29038500 29056066 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701996 S 2026 0 1 "" nsv471729 16 29039165 29041643 CNV Loss Hinds et al 2006 16327809 Oligo_aCGH,PCR Custom Perlegen arrays nssv646010 M 0.108 95 "" esv2750682 16 29039836 29044941 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98209 S 51 0 1 "" 21772 nsv442719 16 29040382 29041501 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" esv33670 16 29089668 29094062 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv96158 S 51 1 0 "" 22007 nsv1778 16 29132634 29165974 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1303 S 9 1 0 "" NA19240 nsv103674 16 29156061 29156110 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv122252 M 24 "" dgv845e1 16 29181449 29609853 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1900,esv431,essv12258,essv2673,essv18716,essv15046,essv12296,essv24667,essv16660,essv19504,essv14697,essv19005,essv16299,essv16023 M 271 0 0 "" NA11829,NA12005,NA12864,NA12874,NA18501,NA18967,NA18976,NA19101,NA19129,NA19138,NA19142,NA19159,NA19161 nsv1779 16 29211639 29256380 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7242 S 9 0 1 "" NA12156 nsv9423 16 29299742 29302977 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26045,nssv23362,nssv23868,nssv24191,nssv22842,nssv22986 M 31 6 0 Samples from several populations that are part of the HapMap project. "" NA18552,NA18563,NA18972,NA19007,NA19144,NA19173 nsv1780 16 29346408 30120928 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4207,nssv9529 M 9 0 2 "" NA12878,NA18507 nsv9425 16 29354394 29356641 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23014 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18552 nsv9426 16 29368118 29396548 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27901,nssv23420,nssv26794,nssv26477 M 31 4 0 Samples from several populations that are part of the HapMap project. "" NA18502,NA18860,NA19007,NA19221 nsv9427 16 29401985 29404436 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23042,nssv23895,nssv22871,nssv26064,nssv24217 M 31 5 0 Samples from several populations that are part of the HapMap project. "" NA18552,NA18563,NA18972,NA19144,NA19173 nsv9428 16 29475322 29496107 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22843 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18564 esv32773 16 29500313 29559994 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97595,essv101152,essv93874,essv94714,essv94128,essv101733,essv98969,essv93196,essv100338 M 51 0 9 "" 21616,21618,21634,21791,21802,21909,21938,22170,22300 nsv9429 16 29506772 29522337 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22872 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18564 nsv9430 16 29529861 29535031 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26083 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18972 nsv833183 16 29533360 29618322 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452492,nssv1452491 M 95 0 2 "" dgv34n68 16 29536903 29726856 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH nsv833185,nsv833184 M 95 0 44 "" nsv525239 16 29554843 30085308 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701329 S 2026 0 1 "" nsv526605 16 29563365 30085308 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702925 S 2026 1 0 "" nsv833186 16 29638374 29782496 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452537 S 95 0 1 "" nsv518568 16 29759239 29779862 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696011 S 2026 1 0 "" esv33498 16 29765264 29766138 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101001 S 51 1 0 "" 21693 nsv457482 16 29779862 29792948 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534664 S 1557 0 1 "" 1780862346_A nsv103231 16 29795299 29801918 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv121809 M 24 "" esv33251 16 29819487 29820360 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100921,essv94071,essv97161,essv93366 M 51 4 0 "" 21693,21802,22075,22170 nsv833187 16 29970761 30091982 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452541,nssv1452540,nssv1452538,nssv1452539,nssv1452542 M 95 0 5 "" dgv846e1 16 29981456 30290781 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv12261,essv20228,essv12321,essv16682,esv1,essv14731,essv19495,essv18938,essv16225,essv16072 M 271 0 0 "" NA12005,NA12144,NA12864,NA18501,NA19101,NA19138,NA19142,NA19159,NA19161 nsv1781 16 30033213 30067116 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5601 S 9 1 0 "" NA19129 dgv847e1 16 30063032 30290781 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv21547,essv18179,essv19962,essv23947 M 271 0 0 "" NA12057,NA12813,NA12814,NA12873 nsv9431 16 30098038 30137347 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20891,nssv25346,nssv22314,nssv23032,nssv26491,nssv26805,nssv22563,nssv26203,nssv23488,nssv26102 M 31 8 2 Samples from several populations that are part of the HapMap project. "" NA07048,NA10839,NA12740,NA12872,NA18502,NA18504,NA18517,NA18860,NA18972,NA18975 esv32539 16 30101685 30102224 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101058,essv95184,essv95880,essv94581,essv95047,essv97708,essv100599 M 51 2 5 "" 21693,21721,21911,21932,22231,22278,22298 nsv471387 16 30111758 30113128 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548136,nssv548132,nssv548135 M 3 "" nsv471388 16 30112718 30116381 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548138,nssv548137,nssv548139 M 3 "" nsv471389 16 30113970 30123150 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548142,nssv548140,nssv548141 M 3 "" nsv509609 16 30135195 30135195 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618115 S 4 1 0 "" CHM nsv9432 16 30141325 30144406 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23922,nssv24243,nssv23448,nssv22900,nssv26121,nssv23100 M 31 6 0 Samples from several populations that are part of the HapMap project. "" NA18552,NA18563,NA18972,NA19007,NA19144,NA19173 nsv509610 16 30164697 30164697 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623694 S 4 1 0 "" NA18994 nsv509611 16 30170677 30170677 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621024 S 4 1 0 "" NA15510 nsv9433 16 30215008 30235850 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22901 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18564 nsv9434 16 30239046 30240573 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21962 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA07029 nsv9437 16 30246841 30253860 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22930 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18564 nsv1782 16 30299313 30317767 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2140 S 9 0 1 "" NA18555 nsv1783 16 30356951 30401822 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7243 S 9 0 1 "" NA12156 nsv1784 16 30437457 30471643 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4209 S 9 1 0 "" NA12878 nsv469724 16 30539946 30747764 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649745 M 265 0 2 Samples from several populations that are part of the HapMap project. "" nsv833188 16 30539947 30747764 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452543 S 95 0 1 "" nsv1785 16 30593444 30625716 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2143 S 9 1 0 "" NA18555 esv33681 16 30618709 30621909 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98277 S 51 0 1 "" 21772 nsv9438 16 30677704 30706943 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27907 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19221 nsv833189 16 30727209 30868296 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452544 S 95 0 1 "" nsv103692 16 30727991 30731618 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv122270 M 24 "" dgv35n68 16 30752552 30955552 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH nsv833190,nsv833191 M 95 0 6 "" nsv507813 16 30765635 30771635 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619166,nssv620603,nssv623210 M 4 3 0 "" NA10860,NA15510,NA18994 nsv457483 16 30811180 31098983 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534665 S 1557 0 1 "" NINDS_207 nsv482192 16 30867906 30873759 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558553 S 1 1 0 "" KB1 nsv833193 16 30868297 31041105 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452551,nssv1452552 M 95 1 1 "" esv33379 16 30892538 30894915 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98952 S 51 0 1 "" 21938 nsv833194 16 31265680 31436046 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452553,nssv1452554 M 95 0 2 "" nsv482193 16 31401940 31409592 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558554 S 1 1 0 "" KB1 nsv833195 16 31483613 31670723 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452555 S 95 0 1 "" nsv1786 16 31543488 31576343 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6667 S 9 1 0 "" NA12156 dgv848e1 16 31658070 33744011 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv3894,essv8784,essv672,essv12166,essv22839,essv2530,essv10418,essv15241,essv9225,essv15139,essv9924,essv14334,essv16054,essv9789,essv13425,essv17060,essv17647,essv13877,essv19870,essv735,essv8375,essv15307,essv15011,essv16741,essv1194,essv1480,essv17997,essv3838,essv1939 M 271 0 0 "" NA11881,NA12004,NA12005,NA18501,NA18508,NA18854,NA18858,NA18862,NA18863,NA18870,NA18872,NA18951,NA18953,NA18959,NA18975,NA18980,NA18994,NA19003,NA19094,NA19101,NA19128,NA19129,NA19145,NA19172,NA19192,NA19194,NA19222 nsv1787 16 31724281 31755376 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4210 S 9 0 1 "" NA12878 dgv849e1 16 31736153 31973415 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv21292,essv10777,essv13688,essv2593,essv10539,essv17013,essv17343,essv17540 M 271 0 0 "" NA10855,NA12762,NA18523,NA18856,NA18990,NA19119,NA19144,NA19240 dgv850e1 16 31736153 32079501 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2797,essv20051,essv21157,essv1347 M 271 0 0 "" NA07048,NA12815,NA18987,NA19007 dgv851e1 16 31736153 32205188 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv21075,essv16237,essv24737 M 271 0 0 "" NA06991,NA11829,NA19161 dgv852e1 16 31736153 32345224 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv14508,essv2903 M 271 0 0 "" NA18953,NA19202 dgv853e1 16 31736153 33295075 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv11838,essv11516,essv10275,essv12800,essv13576,essv18412 M 271 0 0 "" NA12249,NA18506,NA19120,NA19160,NA19173,NA19221 nsv833196 16 31804882 31976454 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452557,nssv1452556 M 95 2 0 "" nsv9439 16 31862605 33726211 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25734,nssv22887,nssv23165,nssv23742,nssv26816,nssv22352,nssv23212,nssv23158,nssv23549,nssv24067,nssv23572,nssv22728,nssv28077,nssv26368,nssv23437,nssv24360,nssv24087,nssv20921,nssv22266,nssv23410,nssv26259,nssv22593,nssv22988,nssv22932,nssv23503,nssv25568,nssv26246,nssv24173,nssv23628,nssv22987,nssv24325,nssv23286,nssv24706,nssv23521,nssv23465,nssv21232,nssv27961,nssv23277,nssv26931,nssv22344,nssv25545,nssv24403,nssv26328,nssv21262,nssv24140,nssv23544,nssv20555,nssv22829,nssv23656,nssv26301,nssv26591,nssv26264,nssv26519,nssv26827,nssv21472,nssv21352,nssv20525,nssv21202,nssv22816,nssv24455,nssv22771,nssv22787,nssv26493,nssv26282,nssv23949,nssv26413,nssv23475,nssv25107,nssv26577,nssv26505,nssv26318,nssv26942,nssv22959,nssv23409,nssv23493,nssv24438,nssv22623,nssv23476,nssv26479,nssv22916,nssv20951,nssv24033,nssv21322,nssv28060,nssv25614,nssv22903,nssv23600,nssv26333,nssv20389,nssv26920,nssv22974,nssv22683,nssv21041,nssv20530,nssv20560,nssv23296,nssv26222,nssv21011,nssv22146,nssv21101,nssv20375,nssv21992,nssv22640,nssv20350,nssv26535,nssv26311,nssv27955,nssv22472,nssv20470,nssv25212,nssv22476,nssv22653,nssv25682,nssv22142,nssv22858,nssv26533,nssv26521,nssv20299,nssv22699,nssv20359,nssv22945,nssv22874,nssv26299,nssv26227,nssv23240,nssv22446,nssv23976,nssv25591,nssv24386,nssv25660,nssv27996,nssv22232,nssv22670,nssv23361,nssv22022,nssv24680,nssv26644,nssv22382,nssv25637,nssv25262,nssv27949,nssv23102,nssv25157,nssv22172,nssv22800,nssv23193,nssv25476,nssv26631,nssv26909,nssv26277,nssv22206,nssv23044,nssv23333,nssv25499,nssv22112,nssv27972,nssv23249,nssv20449,nssv27913,nssv22958,nssv25522,nssv22356,nssv24429,nssv22052,nssv23419,nssv22176,nssv26335,nssv24166,nssv24464,nssv22442,nssv27977,nssv23516,nssv23796,nssv22712,nssv25371,nssv26838,nssv28071,nssv22236,nssv21131,nssv21382,nssv20440,nssv22326,nssv26159,nssv28073,nssv26294,nssv26345,nssv25132,nssv23438,nssv24758,nssv23532,nssv23214,nssv23352,nssv24377,nssv24252,nssv23268,nssv23769,nssv20500,nssv28075,nssv23560,nssv23109,nssv23305,nssv24542,nssv26241,nssv24094,nssv28069,nssv24225,nssv22262,nssv23504,nssv23090,nssv26361,nssv26437,nssv24114,nssv26465,nssv24334,nssv20495,nssv26316,nssv26407,nssv23714,nssv24147,nssv24516,nssv23184,nssv26579,nssv25237,nssv26422,nssv23015,nssv24654,nssv23324,nssv20465,nssv23230,nssv24226,nssv23605,nssv23051,nssv23258,nssv26352,nssv20269,nssv22929,nssv23156,nssv27982,nssv28066,nssv23447,nssv26963,nssv24060,nssv23128,nssv23633,nssv23174,nssv23186,nssv27967,nssv23221,nssv26428,nssv23400,nssv25421,nssv26451,nssv22296,nssv23146,nssv24040,nssv25756,nssv24628,nssv20380,nssv23466,nssv22322,nssv23428,nssv23616,nssv24732,nssv28063,nssv24269,nssv27992,nssv26507,nssv20320,nssv22202,nssv24490,nssv23588,nssv24412,nssv23137,nssv23118,nssv23342,nssv22845,nssv20981,nssv24308,nssv24121,nssv23202,nssv26605,nssv24199,nssv26140,nssv21292,nssv23577,nssv26208,nssv25396,nssv23016,nssv20329,nssv20435,nssv23130,nssv22386,nssv23314,nssv22292,nssv26953,nssv27987,nssv24351,nssv26618 M 31 23 29 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10847,NA10863,NA11830,NA12155,NA12740,NA12802,NA12872,NA18502,NA18504,NA18517,NA18537,NA18552,NA18563,NA18564,NA18572,NA18853,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19144,NA19173,NA19221,NA19240 nsv833197 16 31864841 31995752 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452561,nssv1452559,nssv1452558,nssv1452560,nssv1452563,nssv1452565,nssv1452567,nssv1452566,nssv1452564,nssv1452562 M 95 6 4 "" nsv469789 16 31872116 32027194 CNV Gain Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649810 M 265 4 0 Samples from several populations that are part of the HapMap project. "" nsv433444 16 31931481 33382661 CNV Gain Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463325 S 9 1 0 Samples from several populations that are part of the HapMap project. "" NA19240 dgv854e1 16 31953353 32205188 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv20110,essv1897,essv17811,essv5117,essv6347,essv19610,essv10055,essv7561,essv12316,essv914,essv14692,essv21722,essv1734,essv9399,essv16327,essv8295,essv25020,essv17911,essv5283,essv4892,essv6679,essv6893,essv343,essv19701,essv3963 M 271 0 0 "" NA07345,NA10831,NA10839,NA12003,NA12155,NA12248,NA12264,NA18545,NA18561,NA18577,NA18605,NA18608,NA18609,NA18624,NA18853,NA18970,NA18971,NA18976,NA18997,NA19000,NA19099,NA19103,NA19138,NA19159,NA19193 essv11015 16 31953353 32902091 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19143 esv33069 16 31974497 33760388 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97512,essv92942,essv97093,essv99971,essv99646,essv96517,essv100486,essv98350 M 51 0 8 "" 21616,21939,22075,22086,22217,22261,22298,22352 dgv855e1 16 32007266 32345224 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv7046,essv4202,essv2020 M 271 0 0 "" NA18526,NA18612,NA18949 dgv856e1 16 32007266 32610994 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv7069,essv21995,essv20586 M 271 0 0 "" NA07056,NA11995,NA18537 dgv857e1 16 32007266 32773201 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv3796,essv22101,essv9037,essv8193,essv6163,essv8915,essv24891,essv12995,essv14102 M 271 0 0 "" NA07000,NA10857,NA18532,NA18859,NA18861,NA18943,NA19116,NA19132,NA19200 nsv833198 16 32009435 32190330 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452573,nssv1452571,nssv1452572,nssv1452568,nssv1452569,nssv1452570,nssv1452574,nssv1452575 M 95 7 1 "" nsv469816 16 32032591 32204131 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649837 M 265 1 1 Samples from several populations that are part of the HapMap project. "" nsv471693 16 32032591 32204131 CNV Gain+Loss Sharp et al 2005 15918152 BAC_aCGH,FISH Eichler Segmental Duplication BAC array nssv550749,nssv550753,nssv550752,nssv550751,nssv550750,nssv550748 M 48 4 2 "" JK1058,JK1688,NA10472,NA10493,NA10969,NA17052 nsv520222 16 32045466 33744011 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697290 S 2026 0 1 "" nsv527583 16 32045466 34802728 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704044 S 2026 1 0 "" nsv442720 16 32054387 32542265 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv7281 16 32061335 32742620 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6668 S 9 0 0 "" NA12156 nsv821684 16 32082890 33533065 CNV Gain Sebat_et_al_2004 15273396 ROMA Custom Nimblegen photoprint 85000 probe ROMA oligo array nssv1421317,nssv1421319,nssv1421318 M 31 3 0 "" dgv858e1 16 32140874 32205188 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv452,essv22528,essv20238,essv24229,essv1262,essv2319,essv252,essv18216,essv18970,essv7157,essv3367,essv22972,essv5160,essv4693,essv23006,essv18250,essv3158,essv2229,essv23779,essv4616,essv13745,essv3124,essv773,essv4429,essv7415,essv18730,essv6037,essv6968,essv2684,essv17518,essv4801 M 271 0 0 "" NA07348,NA07357,NA10846,NA10856,NA12005,NA12057,NA12144,NA12762,NA12763,NA12812,NA12874,NA18547,NA18564,NA18571,NA18573,NA18582,NA18594,NA18620,NA18622,NA18623,NA18940,NA18945,NA18948,NA18952,NA18956,NA18960,NA18967,NA18969,NA18995,NA19012,NA19153 dgv859e1 16 32140874 32345224 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2440,essv5802,essv5749 M 271 0 0 "" NA18566,NA18593,NA18999 dgv860e1 16 32140874 32497894 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv18182,essv22571,essv22986,essv12332,essv6374,essv19223,essv5320,essv12617,essv2223,essv1146,essv4983,essv3562,essv2243,essv11773,essv1283 M 271 0 0 "" NA07348,NA07357,NA10838,NA12057,NA18500,NA18504,NA18563,NA18572,NA18637,NA18960,NA18964,NA18965,NA18966,NA18995,NA19138 dgv861e1 16 32140874 32610994 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv14391,essv830,essv21281,essv16137,essv3032,essv6614,essv12561,essv13188,essv17502,essv15716,essv21829,essv8439,essv4478,essv5501,essv4040,essv10169,essv20036,essv20952,essv15384,essv9124,essv23968,essv21153,essv22436,essv10814,essv450,essv9429,essv11257,essv10459,essv3699,essv7830,essv15657,essv16893,essv34 M 271 0 0 "" NA07048,NA10855,NA11839,NA12761,NA12762,NA12801,NA12814,NA12815,NA18507,NA18515,NA18516,NA18552,NA18558,NA18621,NA18632,NA18635,NA18860,NA18871,NA18912,NA18947,NA18952,NA18973,NA18981,NA18991,NA19098,NA19100,NA19102,NA19130,NA19131,NA19203,NA19204,NA19205,NA19208 dgv862e1 16 32140874 33715261 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2443,essv24805,essv24728,essv14438,essv10683,essv17342,essv14498,essv8739,essv9658,essv2861 M 271 0 0 "" NA10860,NA11829,NA18855,NA18856,NA18913,NA18953,NA18999,NA19092,NA19201,NA19202 nsv833199 16 32190210 32341110 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452577,nssv1452576 M 95 0 2 "" nsv509612 16 32193206 32214079 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623695,nssv619685,nssv618116 M 4 3 0 "" CHM,NA10860,NA18994 nsv1789 16 32198944 32220115 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1304,nssv10952,nssv10088,nssv6669 M 9 4 0 "" NA12156,NA15510,NA18956,NA19240 nsv142 16 32202996 32209339 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv142 S 1 1 0 "" NA15510 dgv863e1 16 32206388 32902091 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv15897,essv10746,essv10587 M 271 0 0 "" NA18523,NA19223,NA19240 dgv864e1 16 32206388 33452774 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2601,essv6310,essv13774,essv14750,essv9335,essv16355,essv5273,essv16254,essv18313,essv1467 M 271 0 0 "" NA10846,NA18609,NA18624,NA18853,NA18944,NA18990,NA19153,NA19159,NA19161,NA19193 nsv833200 16 32287041 32440412 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452578 S 95 1 0 "" dgv865e1 16 32296493 32610994 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv16916,essv11808,essv7146,essv13611,essv17601,essv23422,essv21778,essv3279,essv16406,essv13098,essv12709,essv14161,essv11907,essv11765 M 271 0 0 "" NA10854,NA12239,NA12753,NA18502,NA18504,NA18521,NA18547,NA18852,NA18914,NA18972,NA19127,NA19139,NA19140,NA19144 dgv866e1 16 32296493 32758111 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv285,essv18064,essv14638,essv22416,essv10946 M 271 0 0 "" NA10861,NA12145,NA18978,NA19093,NA19209 nsv433303 16 32386670 32586534 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463184 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA18555 dgv867e1 16 32419813 32610994 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv3228,essv12466,essv761,essv22037,essv24938,essv2690,essv6002,essv20250,essv23556,essv5811,essv4743,essv5118,essv20626,essv4130,essv4646,essv5720,essv21371,essv7035,essv15598,essv13681,essv12669,essv1094 M 271 0 0 "" NA06993,NA06994,NA07056,NA12144,NA12154,NA12740,NA18500,NA18555,NA18566,NA18571,NA18577,NA18593,NA18594,NA18612,NA18620,NA18956,NA18964,NA18967,NA18974,NA19119,NA19137,NA19207 dgv868e1 16 32419813 32773201 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv4877,essv17843,essv1768,essv4181,essv1361,essv19621,essv10027,essv18609,essv6682,essv1855,essv21718,essv7092,essv23369,essv6895,essv24985,essv2012,essv18954,essv20128,essv5900,essv4008 M 271 0 0 "" NA07345,NA10831,NA10839,NA12005,NA12155,NA12234,NA12248,NA12750,NA18526,NA18537,NA18550,NA18561,NA18605,NA18608,NA18949,NA18970,NA18976,NA18997,NA19007,NA19099 essv8599 16 32446676 32576815 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19239 nsv833201 16 32446701 32653573 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452581,nssv1452582,nssv1452580,nssv1452579,nssv1452583,nssv1452587,nssv1452586,nssv1452585,nssv1452584,nssv1452588 M 95 8 2 "" nsv469892 16 32456419 32617025 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649913 M 265 19 7 Samples from several populations that are part of the HapMap project. "" nsv471692 16 32456420 32617025 CNV Gain+Loss Sharp et al 2005 15918152 BAC_aCGH,FISH Eichler Segmental Duplication BAC array nssv551205,nssv551201,nssv551200,nssv551202,nssv551212,nssv551220,nssv551207,nssv551204,nssv551209,nssv551208,nssv551197,nssv551203,nssv551218,nssv551210,nssv551217,nssv551199,nssv551215,nssv551213,nssv551214,nssv551216,nssv551206,nssv551219,nssv551198,nssv551211 M 48 15 9 "" JK1051,JK1058,JK1688,JK776,NA10469,NA10470,NA10471,NA10472,NA10473,NA10493,NA10495,NA10969,NA10970,NA11323,NA15725,NA15730,NA15732,NA16688,NA17014,NA17015,NA17016,NA17017,NA17052,NA17058 nsv471500 16 32561838 33432843 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv547841,nssv547842,nssv547843 M 3 "" dgv869e1 16 32577185 33295075 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv16419,essv2786,essv14617,essv12361,essv10098,essv7072,essv5927,essv21010,essv24842,essv4632,essv7526,essv23569,essv1131,essv6693 M 271 0 0 "" NA06991,NA06993,NA07000,NA18537,NA18545,NA18550,NA18594,NA18608,NA18964,NA18987,NA19093,NA19130,NA19138,NA19139 essv7855 16 32612180 32902091 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18558 dgv870e1 16 32612180 33715261 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv309,essv19699,essv913,essv8211,essv8951,essv20026,essv2062,essv23363,essv13048,essv13701,essv13033,essv17881,essv10945,essv399 M 271 0 0 "" NA07048,NA12003,NA12264,NA12750,NA18852,NA18859,NA18949,NA18971,NA18978,NA19000,NA19116,NA19119,NA19200,NA19209 nsv469746 16 32646443 32828220 CNV Gain Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649767 M 265 9 0 Samples from several populations that are part of the HapMap project. "" dgv871e1 16 32722382 32902091 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv12416,essv56,essv16900,essv484,essv16931,essv21458,essv14070,essv7202,essv4050,essv13198,essv24529,essv21810,essv21150,essv19095,essv15645,essv15763,essv18641,essv11217,essv16149,essv17558,essv11945,essv23409,essv21275 M 271 0 0 "" NA07055,NA10854,NA10855,NA11839,NA12234,NA12717,NA12762,NA12802,NA12815,NA18502,NA18547,NA18635,NA18861,NA18912,NA18952,NA18991,NA19100,NA19102,NA19131,NA19144,NA19204,NA19205,NA19238 dgv872e1 16 32722382 33581409 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2645,essv19636,essv21697,essv17789,essv239 M 271 0 0 "" NA10831,NA12155,NA12248,NA18948,NA18967 nsv442395 16 32806748 32823606 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv7282 16 32906698 33539015 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9315 S 9 0 0 "" NA18517 dgv873e1 16 32985975 33187759 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1267,essv22602,essv10066,essv8290,essv20287,essv2339,essv3094,essv3988 M 271 0 0 "" NA07348,NA12144,NA18940,NA18969,NA18970,NA18995,NA19099,NA19103 dgv874e1 16 32985975 33295075 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1846,essv4911,essv1791,essv4701,essv6006,essv6880,essv5107,essv3362,essv6196,essv20144,essv4764,essv22429,essv11777 M 271 0 0 "" NA07345,NA10861,NA18504,NA18532,NA18561,NA18571,NA18577,NA18605,NA18620,NA18622,NA18945,NA18976,NA18997 dgv875e1 16 32985975 33581409 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv7018,essv24238,essv4197,essv4445,essv5807,essv24960,essv20622,essv18929,essv762 M 271 0 0 "" NA07056,NA10839,NA10856,NA12005,NA18526,NA18552,NA18566,NA18612,NA18956 nsv833202 16 33001317 33207033 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452599,nssv1452597,nssv1452600,nssv1452598,nssv1452590,nssv1452595,nssv1452596,nssv1452589,nssv1452594,nssv1452591,nssv1452592,nssv1452593 M 95 12 0 "" essv5744 16 33017963 33156694 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18593 dgv876e1 16 33017963 33715261 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv11226,essv22159,essv10997,essv14107,essv23883,essv7857,essv9471,essv21977,essv3825,essv16982,essv418 M 271 0 0 "" NA10857,NA11995,NA12814,NA18558,NA18861,NA18943,NA18952,NA19143,NA19144,NA19204,NA19208 dgv877e1 16 33095876 33295075 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv10486,essv18085,essv23863,essv15629 M 271 0 0 "" NA07022,NA12145,NA18515,NA18912 nsv471390 16 33112481 33115680 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548146,nssv548143,nssv548144 M 3 "" nsv482194 16 33112481 33115680 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558555 S 1 1 0 "" KB1 nsv509614 16 33133840 33133840 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619686 S 4 1 0 "" NA10860 nsv510684 16 33133840 33211488 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622707 S 4 0 1 "" NA18994 nsv511048 16 33133840 33211488 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622417,nssv621637 M 4 0 0 "" NA10860,NA15510 nsv1790 16 33146315 33228951 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6670 S 9 0 1 "" NA12156 dgv878e1 16 33147013 33235516 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv18196,essv2160,essv10044,essv7165,essv6971,essv12318,essv22980,essv20266,essv4402,essv5714,essv4617,essv17537,essv18280,essv3110,essv4021,essv22535 M 271 0 0 "" NA07348,NA07357,NA10846,NA12057,NA12144,NA12762,NA18547,NA18573,NA18582,NA18593,NA18594,NA18960,NA18969,NA18970,NA19099,NA19138 dgv879e1 16 33147013 33456507 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv18710,essv21193,essv3042,essv4163 M 271 0 0 "" NA11830,NA12874,NA18555,NA18981 nsv442721 16 33208395 33618281 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv509615 16 33211488 33211488 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619687 S 4 1 0 "" NA10860 dgv880e1 16 33282424 33456507 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv20277,essv536,essv24088,essv16727,essv4991,essv22479 M 271 0 0 "" NA10859,NA11882,NA12144,NA18637,NA18998,NA19142 dgv881e1 16 33282424 33581409 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv10448,essv1037,essv22580,essv19510,essv2318,essv16544,essv22393,essv12663,essv4356,essv172,essv3120 M 271 0 0 "" NA07348,NA12864,NA12875,NA18500,NA18515,NA18573,NA18940,NA18968,NA18969,NA19005,NA19210 dgv882e1 16 33282424 33715261 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv18627,essv21248,essv23564,essv21842,essv10135,essv1344,essv14627,essv12412,essv12546,essv8435,essv5923,essv7191,essv6637,essv18372,essv2773,essv10585,essv9007,essv11920,essv10780,essv16147,essv15428,essv4092,essv20955,essv7696,essv24507,essv16846,essv1456,essv11899,essv21161,essv17490,essv15683,essv12717,essv15812,essv8594,essv21420,essv23415,essv13175,essv10332 M 271 0 0 "" NA06993,NA10854,NA10855,NA11839,NA12234,NA12249,NA12717,NA12762,NA12801,NA12802,NA12815,NA18502,NA18506,NA18516,NA18523,NA18547,NA18550,NA18621,NA18633,NA18635,NA18912,NA18914,NA18944,NA18987,NA19007,NA19093,NA19098,NA19100,NA19102,NA19130,NA19132,NA19203,NA19205,NA19221,NA19223,NA19238,NA19239,NA19240 essv9987 16 33282424 34224164 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19099 nsv833205 16 33282450 33452721 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452602,nssv1452601,nssv1452605,nssv1452604,nssv1452603 M 95 4 1 "" nsv510417 16 33331252 33337252 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624176 S 4 0 1 "" NA18994 nsv1791 16 33333744 33347220 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1305 S 9 1 0 "" NA19240 esv2751556 16 33371600 34997000 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6988474,essv6981963,essv6981964,essv6981965,essv6981966 M 771 1 0 "" BEC_51 nsv469827 16 33390426 33557453 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649848 M 265 5 63 Samples from several populations that are part of the HapMap project. "" nsv471694 16 33390427 33557453 CNV Gain+Loss Sharp et al 2005 15918152 BAC_aCGH,FISH Eichler Segmental Duplication BAC array nssv550820,nssv550822,nssv550816,nssv550813,nssv550821,nssv550819,nssv550815,nssv550814,nssv550812,nssv550817,nssv550818 M 48 8 3 "" JK1058,NA10493,NA10496,NA10967,NA10969,NA15726,NA15728,NA17014,NA17015,NA17020,P86GA nsv833206 16 33396660 33579116 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452606,nssv1452607,nssv1452608,nssv1452609,nssv1452613,nssv1452611,nssv1452610,nssv1452612 M 95 7 1 "" dgv883e1 16 33433122 33715261 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv13794,essv77,essv21056,essv12809,essv15775,essv13586,essv16476,essv6776,essv2621,essv14199,essv10850,essv24921,essv13562,essv18274,essv21338,essv3713 M 271 0 0 "" NA06991,NA06994,NA10846,NA12878,NA18562,NA18871,NA18947,NA18990,NA18991,NA19120,NA19127,NA19131,NA19139,NA19140,NA19153,NA19160 nsv833207 16 33456462 33473162 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452614 S 95 0 1 "" nsv433445 16 33463813 33867424 CNV Gain Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463326 S 9 1 0 Samples from several populations that are part of the HapMap project. "" NA19240 nsv507814 16 33465178 33471178 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623211 S 4 1 0 "" NA18994 essv23235 16 33544442 33715261 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA07029 nsv1792 16 33661561 33673206 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5602 S 9 0 1 "" NA19129 nsv509616 16 33771796 33833218 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621025,nssv619688 M 4 2 0 "" NA10860,NA15510 nsv833208 16 33810521 33927835 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452615 S 95 1 0 "" esv32538 16 33843007 34316965 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97458,essv99810 M 51 2 0 "" 21616,22086 nsv9440 16 33851926 34031200 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24251,nssv24783,nssv25287,nssv23531,nssv22374,nssv22961,nssv28079,nssv25778,nssv22502 M 31 9 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA11830,NA12155,NA18504,NA18853,NA18975,NA18980,NA19221,NA19240 nsv833209 16 33883095 33903211 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452642,nssv1452675,nssv1452637,nssv1452674,nssv1452657,nssv1452649,nssv1452677,nssv1452621,nssv1452676,nssv1452678,nssv1452641,nssv1452638,nssv1452640,nssv1452639,nssv1452643,nssv1452648,nssv1452647,nssv1452644,nssv1452652,nssv1452645,nssv1452656,nssv1452618,nssv1452650,nssv1452651,nssv1452617,nssv1452616,nssv1452619,nssv1452654,nssv1452655,nssv1452653,nssv1452661,nssv1452626,nssv1452622,nssv1452636,nssv1452660,nssv1452673,nssv1452666,nssv1452658,nssv1452659,nssv1452623,nssv1452665,nssv1452625,nssv1452624,nssv1452663,nssv1452664,nssv1452662,nssv1452672,nssv1452667,nssv1452627,nssv1452629,nssv1452646,nssv1452628,nssv1452635,nssv1452671,nssv1452632,nssv1452670,nssv1452669,nssv1452631,nssv1452630,nssv1452634,nssv1452668,nssv1452633,nssv1452620 M 95 0 63 "" nsv833210 16 33920600 33927835 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452679,nssv1452681,nssv1452680 M 95 2 1 "" nsv457484 16 34078955 34393084 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534666 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00535 dgv165n21 16 34078955 35026333 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv521994,nsv521817 M 2026 2 0 "" nsv516385 16 34117306 34663360 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv681279,nssv685243,nssv665516,nssv652714,nssv672391,nssv691142,nssv673236,nssv680275,nssv688006,nssv668631,nssv681926,nssv689553,nssv664481,nssv672133,nssv659380,nssv688067,nssv684782,nssv680816,nssv665546,nssv651703,nssv689604,nssv683050,nssv652392,nssv672659,nssv653883,nssv691581,nssv668269,nssv677984,nssv659243,nssv664630,nssv660090,nssv658428,nssv683836,nssv693689,nssv668384,nssv676580,nssv673065,nssv668614,nssv677591,nssv657415,nssv683536,nssv681938,nssv653077,nssv655180,nssv661981,nssv672468,nssv663620,nssv654174,nssv659034,nssv658297,nssv677895,nssv652687,nssv661837,nssv674233,nssv684252,nssv675843,nssv677556,nssv667894,nssv662341,nssv674214,nssv663058,nssv663966,nssv679169,nssv660408,nssv676296,nssv667226,nssv691960,nssv673669,nssv685999,nssv688634,nssv663828,nssv666693,nssv689262,nssv665925,nssv682925,nssv682827,nssv672281,nssv682082,nssv676607,nssv672961,nssv657914,nssv682045,nssv654387,nssv684615,nssv678894,nssv663337,nssv691904,nssv670752,nssv680407,nssv673749,nssv668828,nssv666280,nssv658839,nssv656727,nssv671915,nssv673964,nssv660397,nssv657019,nssv662509,nssv689842,nssv652819,nssv670284,nssv678258,nssv659086,nssv652864,nssv666670,nssv682766,nssv687344,nssv661560,nssv693375,nssv655879,nssv692780,nssv671825,nssv691077,nssv666752,nssv674365,nssv677961,nssv684195,nssv690775,nssv677339,nssv689797,nssv679254,nssv681891,nssv669684 M 2026 124 0 "" esv2751557 16 34121100 34614572 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6981190,essv6981191,essv6981192 M 771 1 0 "" BEC_362 nsv833211 16 34123710 34247192 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452683,nssv1452682 M 95 2 0 "" dgv884e1 16 34215264 34490212 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv17337,essv12535,essv10350 M 271 0 0 "" NA18506,NA18856,NA19098 dgv885e1 16 34215264 34679872 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv15390,essv11243,essv10071,essv3304,essv21242,essv8843,essv1887,essv25081,essv20147,essv18189,essv10471,essv16108,essv3476,essv22566,essv4675,essv12516,essv7339,essv6605,essv8453,essv20233,essv2823,essv12624,essv22881,essv11806,essv23620,essv2626,essv11990,essv24265,essv1250,essv21703,essv851,essv5223,essv20422,essv4180,essv3885,essv1031,essv1369,essv3174,essv10227,essv6153,essv8766,essv8284,essv2472,essv19632,essv23254,essv22955,essv15290,essv4834,essv15770,essv22329,essv12203,essv13189,essv3773,essv24783,essv24083,essv525,essv6373,essv20355,essv284,essv12840,essv4479,essv13646,essv23849,essv7553,essv7025,essv18281,essv14540,essv21774,essv8168,essv15709,essv9192,essv4893,essv22406,essv23505,essv15548,essv12357,essv18420,essv21523,essv6732,essv23650,essv5169,essv5254,essv14191,essv9592,essv10901,essv16635,essv18680,essv10148,essv6034,essv24682,essv3357,essv21852,essv3221,essv4383,essv13743,essv7183,essv21357,essv7124,essv9882,essv19654,essv11778,essv17825,essv11713,essv6291,essv11874,essv3063,essv6706,essv15022,essv5905,essv18086,essv23202,essv2507,essv14344,essv10376,essv10733,essv20182,essv2586,essv22162,essv4663,essv11580,essv5060,essv4029,essv15462,essv23790,essv19430,essv25047,essv6247,essv11121,essv4964,essv16549,essv15854,essv13084,essv4727,essv5351,essv4155,essv9356,essv20106,essv24536,essv23085,essv13882,essv21197,essv4572,essv10623,essv22496,essv21080,essv6832,essv23741,essv11434,essv23138,essv22681,essv5468,essv22254,essv13002,essv9158,essv2191,essv18542,essv8619,essv14084,essv23966,essv22012,essv22273,essv22069,essv15348,essv19108,essv17212,essv17072,essv9790,essv18351,essv19565,essv14960,essv24975,essv10877,essv1780,essv7293,essv19172,essv14601,essv21391,essv13691,essv16764,essv22715,essv6944,essv18998,essv19336,essv9734,essv18853,essv8208,essv5748,essv12718,essv18768,essv17939,essv2313,essv1621,essv3799,essv7416,essv9415,essv1430,essv14405,essv22399,essv23555,essv20568,essv16868,essv10996,essv18030,essv18655,essv7844,essv3716,essv234,essv5134,essv12407,essv2013,essv1189,essv2246,essv16954,essv19829,essv473,essv9068,essv18575,essv24838,essv2841,essv771,essv21,essv16460,essv21445,essv16049,essv4244,essv16266,essv11932,essv5809,essv807,essv1141,essv23454,essv19765,essv22741,essv3095,essv3521,essv17228,essv3977,essv17453,essv24911,essv151,essv22196,essv6897,essv396,essv14690 M 271 0 0 "" NA06985,NA06991,NA06993,NA06994,NA07000,NA07019,NA07022,NA07029,NA07034,NA07048,NA07055,NA07056,NA07345,NA07348,NA07357,NA10830,NA10831,NA10835,NA10839,NA10846,NA10847,NA10851,NA10854,NA10855,NA10856,NA10857,NA10859,NA10860,NA10861,NA10863,NA11829,NA11830,NA11832,NA11839,NA11840,NA11882,NA11992,NA11993,NA11994,NA12003,NA12005,NA12006,NA12043,NA12044,NA12056,NA12057,NA12144,NA12145,NA12154,NA12155,NA12156,NA12234,NA12236,NA12239,NA12248,NA12249,NA12264,NA12717,NA12740,NA12751,NA12752,NA12760,NA12762,NA12763,NA12801,NA12802,NA12812,NA12813,NA12814,NA12815,NA12864,NA12865,NA12872,NA12873,NA12874,NA12875,NA12878,NA12891,NA12892,NA18500,NA18501,NA18502,NA18503,NA18504,NA18505,NA18507,NA18508,NA18515,NA18516,NA18517,NA18521,NA18523,NA18524,NA18526,NA18532,NA18537,NA18540,NA18545,NA18547,NA18550,NA18552,NA18555,NA18558,NA18561,NA18562,NA18563,NA18564,NA18566,NA18570,NA18571,NA18572,NA18573,NA18576,NA18577,NA18579,NA18582,NA18592,NA18593,NA18594,NA18603,NA18605,NA18608,NA18609,NA18611,NA18612,NA18620,NA18621,NA18622,NA18623,NA18624,NA18632,NA18635,NA18636,NA18637,NA18852,NA18853,NA18854,NA18855,NA18857,NA18859,NA18860,NA18861,NA18862,NA18863,NA18870,NA18871,NA18872,NA18912,NA18913,NA18914,NA18940,NA18942,NA18943,NA18944,NA18945,NA18947,NA18948,NA18949,NA18951,NA18952,NA18953,NA18956,NA18960,NA18961,NA18964,NA18965,NA18966,NA18967,NA18968,NA18969,NA18970,NA18971,NA18972,NA18973,NA18974,NA18976,NA18978,NA18981,NA18987,NA18990,NA18991,NA18992,NA18994,NA18995,NA18997,NA18998,NA18999,NA19000,NA19003,NA19005,NA19007,NA19012,NA19092,NA19093,NA19094,NA19099,NA19100,NA19101,NA19102,NA19103,NA19116,NA19119,NA19120,NA19127,NA19128,NA19129,NA19130,NA19131,NA19132,NA19137,NA19138,NA19139,NA19140,NA19141,NA19142,NA19143,NA19144,NA19145,NA19152,NA19153,NA19154,NA19159,NA19161,NA19171,NA19172,NA19173,NA19194,NA19202,NA19203,NA19204,NA19205,NA19206,NA19207,NA19208,NA19209,NA19210,NA19211,NA19221,NA19222,NA19223,NA19238,NA19239 nsv7283 16 34216033 34610198 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4212,nssv10954,nssv10955,nssv4211,nssv10953 M 9 0 0 "" NA12878,NA15510 nsv509617 16 34231296 34231296 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619689 S 4 1 0 "" NA10860 nsv510685 16 34231296 34295869 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618936 S 4 0 1 "" NA10860 dgv4n1 16 34236453 34590205 CNV Loss Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis nsv143,nsv144 M 1 0 1 "" NA15510 dgv117e55 16 34268070 34654032 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv2751580,esv2751600,esv2751603,esv2751596,esv2751559,esv34829,esv2751594,esv2751606,esv2751584,esv2751601,esv2751583,esv2751574,esv2751581,esv2751568,esv2751597,esv2751595,esv34552,esv2751558,esv2751560,esv2751561,esv2751562,esv2751563,esv2751564,esv2751565,esv2751566,esv2751567,esv2751569,esv2751570,esv2751571,esv2751572,esv2751573,esv2751575,esv2751577,esv2751578,esv2751579,esv2751582,esv2751585,esv2751586,esv2751587,esv2751589,esv2751590,esv2751591,esv2751592,esv2751593,esv2751598,esv2751599,esv2751602,esv2751604,esv2751605,esv2751607,esv2751588,esv2751576 M 771 52 0 "" BEC_114,BEC_182,BEC_280,BEC_293,BEC_32,BEC_333,BEC_376,BEC_389,BEC_415,BEC_424,BEC_483,BEC_510,BEC_513,BEC_524,BEC_547,BEC_550,BEC_559,BEC_565,BEC_575,BEC_578,BEC_596,BEC_604,BEC_606,BEC_625,BEC_626,BEC_635,BEC_637,BEC_646,BEC_652,BEC_653,BEC_660,BEC_667,BEC_668,BEC_676,BEC_682,BEC_685,BEC_687,BEC_708,BEC_734,BEC_775,BEC_793,BEC_810,BEC_89,BEC_98,NA10860,NA12813,SPC_141,SPC_162,SPC_186,SPC_194,SPC_20,SPC_37 nsv145 16 34280595 34333152 CNV Loss Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv145 S 1 0 1 "" NA15510 nsv833212 16 34291464 34491828 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452688,nssv1452687,nssv1452686,nssv1452685,nssv1452689,nssv1452692,nssv1452690,nssv1452691,nssv1452684 M 95 9 0 "" dgv118e55 16 34307200 34560001 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv34817,esv34287,esv34539 M 771 3 0 "" NA12815,NA12872,NA12892 dgv886e1 16 34307201 34900436 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv22804,essv21647,essv21917,essv22710 M 271 0 0 "" NA10838,NA12004,NA12753,NA12761 dgv119e55 16 34307201 34996986 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv34862,esv34629 M 771 2 0 "" NA12004,NA12239 nsv9441 16 34313085 34617320 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23494,nssv24333,nssv23242,nssv22506,nssv26973,nssv22404,nssv26983,nssv23003,nssv26443,nssv23644,nssv28081,nssv23587,nssv24192,nssv26670,nssv26993,nssv20590,nssv20479,nssv26593,nssv23615,nssv24481,nssv26657,nssv26683,nssv22532,nssv26457,nssv22990,nssv24307,nssv23043,nssv23456,nssv24808,nssv21502,nssv24858,nssv25337,nssv25312,nssv23823,nssv25800,nssv23559,nssv26350,nssv24833,nssv23484,nssv23661 M 31 0 28 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10863,NA11830,NA12155,NA12740,NA12802,NA18502,NA18504,NA18517,NA18537,NA18552,NA18563,NA18564,NA18572,NA18853,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19144,NA19173,NA19221,NA19240 nsv1793 16 34318608 34349423 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10956 S 9 1 0 "" NA15510 esv33073 16 34323915 34602359 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98901,essv97504,essv101193,essv93866,essv101048,essv98171,essv94366,essv93157,essv95401,essv95894,essv94617,essv99052,essv93624,essv96149,essv96605,essv100015,essv93476,essv93310,essv99658,essv96521,essv99238,essv100137,essv100388,essv98353 M 51 0 24 "" 21606,21616,21618,21634,21693,21772,21808,21863,21872,21911,21932,21938,21972,22007,22011,22086,22128,22170,22217,22261,22275,22286,22300,22352 nsv442722 16 34324072 34614568 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv22n64 16 34326402 34550666 CNV Gain Wang_et_al_2007 17921354 SNP_array nsv817731,nsv817730 M 112 11 0 "" NA10847,NA10851,NA10860,NA11992,NA11993,NA12056,NA12239,NA12801,NA12813,NA12878,NA12892 nsv833213 16 34357729 34545210 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452701,nssv1452693,nssv1452700,nssv1452699,nssv1452694,nssv1452698,nssv1452697,nssv1452702,nssv1452704,nssv1452703,nssv1452696,nssv1452695 M 95 12 0 "" essv19487 16 34388087 34528359 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12750 essv10561 16 34476093 34627143 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19240 nsv833214 16 34515401 34713569 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452706,nssv1452705,nssv1452709,nssv1452710,nssv1452707,nssv1452708,nssv1452711 M 95 7 0 "" esv32955 16 34621097 34622406 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99443 S 51 1 0 "" 22335 nsv457486 16 34663360 35026333 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534668 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01310 essv19821 16 34667702 34820192 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA10847 nsv9442 16 34733329 34883493 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28113 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19221 nsv442396 16 34879419 34916829 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv509618 16 35014954 35134994 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619690 S 4 1 0 "" NA10860 nsv527568 16 35026333 35106851 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704029 S 2026 0 1 "" nsv433446 16 35062145 35141900 CNV Gain Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463327 S 9 1 0 Samples from several populations that are part of the HapMap project. "" NA12878 nsv517097 16 35071364 35106851 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv675899,nssv672620,nssv679496,nssv685597,nssv661273,nssv679422,nssv655259,nssv678296,nssv663072,nssv689605,nssv653778,nssv683644,nssv676213,nssv675634,nssv672524,nssv683260,nssv691418,nssv683338,nssv669507,nssv656163,nssv672861,nssv681692,nssv660430,nssv668172,nssv665726,nssv656757,nssv655711,nssv656836,nssv661104,nssv662813,nssv664947,nssv682171,nssv680466,nssv693690,nssv667249,nssv700642,nssv685906,nssv685579,nssv675257,nssv693406,nssv653858,nssv664027,nssv687579,nssv687495,nssv668308,nssv687520,nssv689336,nssv653952,nssv683588,nssv670855,nssv684971,nssv656278,nssv669999,nssv672263,nssv669112,nssv681302,nssv681020,nssv671708,nssv659071,nssv667595,nssv691328,nssv656799,nssv686835,nssv654095,nssv658575,nssv661366,nssv658227,nssv658493,nssv673846,nssv657161,nssv687361,nssv688929,nssv690509,nssv677088,nssv673160,nssv669578,nssv678728,nssv654285,nssv686640 M 2026 1 78 "" nsv1794 16 35076815 35110851 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2951 S 9 1 0 "" NA18555 nsv433447 16 44943958 45037126 CNV Gain Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463328 S 9 1 0 Samples from several populations that are part of the HapMap project. "" NA19240 nsv103312 16 44946466 44946466 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv121890 M 24 "" nsv103109 16 44948175 44949343 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv121687 M 24 "" nsv103238 16 44948917 44952026 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv121816 M 24 "" nsv103808 16 44952529 44953098 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv122386 M 24 "" nsv103863 16 44954535 44955384 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv122441 M 24 "" nsv103586 16 44954535 44960342 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv122164 M 24 "" nsv103652 16 44975076 44975205 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv122230 M 24 "" nsv103776 16 44984237 44984366 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv122354 M 24 "" nsv103777 16 44984664 44992400 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv122355 M 24 "" nsv103457 16 44992430 45000818 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv122035 M 24 "" nsv833216 16 45058798 45229361 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452712 S 95 0 1 "" nsv526656 16 45096893 45404164 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702984 S 2026 1 0 "" nsv1795 16 45597094 45598005 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2952 S 9 1 0 "" NA18555 nsv528423 16 45721375 45905281 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705015 S 2026 0 1 "" nsv525170 16 45751552 45861136 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701244 S 2026 1 0 "" dgv887e1 16 45819013 46163788 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv808,essv2683,essv3249 M 271 0 0 "" NA18967 nsv1796 16 45862453 45896271 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7245 S 9 1 0 "" NA12156 nsv510418 16 45886710 45892710 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624177 S 4 0 1 "" NA18994 nsv833217 16 45915649 46085156 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452713,nssv1452714 M 95 2 0 "" esv34317 16 45948101 46229980 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6990452,essv6980181,essv6987026 M 771 1 0 "" NA18967 nsv520355 16 45982329 46722278 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697369 S 2026 1 0 "" nsv525976 16 46141373 46592527 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702195 S 2026 1 0 "" nsv1797 16 46317943 46351517 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4213 S 9 1 0 "" NA12878 nsv509619 16 46368442 46390826 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618117 S 4 1 0 "" CHM nsv833218 16 46427320 46609246 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452715 S 95 0 1 "" nsv1798 16 46593372 46638042 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7246 S 9 0 1 "" NA12156 nsv833219 16 46848096 47016802 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452716 S 95 1 0 "" dgv888e1 16 46886938 47037255 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv4607,esv461 M 271 0 0 "" NA18524 nsv519663 16 47037436 47046888 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696979 S 2026 0 1 "" esv33450 16 47129808 47133420 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98774 S 51 1 0 "" 21606 nsv1800 16 47277824 47312102 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1306 S 9 1 0 "" NA19240 nsv833220 16 47304678 47457485 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452717 S 95 1 0 "" dgv9e24 16 47388180 47389205 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH esv2750548,esv2750530,esv2750714,esv2750773 M 51 0 4 "" 21791,21802,21805,22352 nsv1801 16 47460682 47505335 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7247 S 9 0 1 "" NA12156 esv33343 16 47462888 47464131 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv94748,essv94426,essv97359,essv99083,essv92876,essv92751,essv93674,essv96640,essv97249,essv98558,essv96011,essv93485,essv99746,essv99181,essv99374 M 51 15 0 "" 21791,21808,21879,21938,21939,21944,21972,22011,22075,22085,22127,22128,22217,22275,22335 esv33751 16 47472180 47473105 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98820 S 51 1 0 "" 21606 nsv821685 16 47619254 47687206 CNV Loss Sebat_et_al_2004 15273396 ROMA Custom Nimblegen photoprint 85000 probe ROMA oligo array nssv1421320 S 31 0 1 "" nsv525406 16 47628695 47640431 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701530 S 2026 0 1 "" nsv833221 16 47812734 47993913 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452718 S 95 0 1 "" nsv1802 16 47931170 47963291 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5603 S 9 1 0 "" NA19129 nsv833222 16 47958917 48127771 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452719 S 95 0 1 "" nsv1803 16 47989648 48023853 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7249 S 9 1 0 "" NA12156 nsv1804 16 48012212 48056219 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4214 S 9 0 1 "" NA12878 nsv833223 16 48087929 48278735 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452720 S 95 0 1 "" nsv522048 16 48101741 48112381 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694819 S 2026 0 1 "" nsv519328 16 48173942 48175356 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696794 S 2026 1 0 "" nsv507815 16 48184174 48190174 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619167 S 4 1 0 "" NA10860 nsv517237 16 48212511 48235013 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv676503,nssv654096 M 2026 0 2 "" nsv527406 16 48365223 48366033 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703843 S 2026 0 1 "" nsv525598 16 48519907 48527464 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701741 S 2026 0 1 "" nsv103726 16 48851531 48851594 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv122304 M 24 "" nsv1805 16 48898527 48943435 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7250 S 9 0 1 "" NA12156 nsv1806 16 48921307 48936970 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5604 S 9 1 0 "" NA19129 nsv518317 16 49415194 49466306 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695748 S 2026 1 0 "" nsv528036 16 49430496 49431204 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704568 S 2026 1 0 "" nsv521752 16 49430496 49432256 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694094 S 2026 0 1 "" nsv523427 16 49430496 49434889 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699182 S 2026 0 1 "" nsv528338 16 49430496 49462511 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704920 S 2026 1 0 "" nsv525214 16 49431204 49434889 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701297 S 2026 1 0 "" nsv833224 16 49653989 49810598 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452721 S 95 0 1 "" nsv833225 16 49932387 50138945 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452723,nssv1452722 M 95 2 0 "" nsv507816 16 49946653 49952653 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620604 S 4 1 0 "" NA15510 nsv1807 16 50001617 50022787 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2953 S 9 1 0 "" NA18555 nsv833227 16 50146866 50344053 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452724 S 95 1 0 "" nsv833228 16 50267071 50409506 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452725 S 95 1 0 "" nsv516564 16 50309552 50321431 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv669191,nssv698685,nssv685812 M 2026 0 3 "" nsv518099 16 50368066 50371362 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695511 S 2026 0 1 "" nsv507817 16 50395675 50401675 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623212,nssv619168,nssv620605 M 4 3 0 "" NA10860,NA15510,NA18994 nsv103142 16 50410900 50410949 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv121720 M 24 "" nsv520812 16 50596704 50615390 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694402 S 2026 0 1 "" nsv102987 16 50706984 50707036 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv121565 M 24 "" nsv103609 16 50707091 50707143 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv122187 M 24 "" nsv1808 16 50772280 50804697 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7251 S 9 0 1 "" NA12156 nsv522374 16 50777443 50786246 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695153 S 2026 0 1 "" nsv833229 16 50922724 51079858 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452726 S 95 0 1 "" nsv457488 16 51025737 51080218 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534669 S 1557 0 1 "" 1780854481_A nsv523458 16 51030764 51059625 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699216 S 2026 0 1 "" nsv833230 16 51133304 51339070 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452727,nssv1452728 M 95 0 2 "" nsv522973 16 51274992 51278682 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698643 S 2026 0 1 "" nsv833231 16 51366066 51539608 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452737,nssv1452736,nssv1452729,nssv1452735,nssv1452730,nssv1452733,nssv1452732,nssv1452731,nssv1452734 M 95 9 0 "" nsv518010 16 51379138 51390923 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695422 S 2026 0 1 "" nsv833232 16 51566351 51749335 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452738 S 95 0 1 "" nsv833233 16 51637432 51848749 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452739,nssv1452740 M 95 2 0 "" nsv510419 16 51685587 51691587 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622261,nssv621437,nssv624178 M 4 0 3 "" NA10860,NA15510,NA18994 nsv9443 16 51899072 51900525 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27003 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18860 nsv457489 16 51921186 51974123 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534670 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00090 esv32813 16 51982855 51986691 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv94561,essv100284 M 51 0 2 "" 21932,22286 nsv103503 16 52150777 52156676 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv122081 M 24 "" nsv525463 16 52256177 52288103 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701591 S 2026 0 1 "" nsv527247 16 52383621 52386253 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703649 S 2026 0 1 "" nsv833234 16 52637162 52791879 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452746,nssv1452742,nssv1452741,nssv1452743,nssv1452745,nssv1452744 M 95 6 0 "" nsv833235 16 52820799 53058588 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452747,nssv1452748 M 95 2 0 "" nsv833236 16 52867795 53040084 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452749 S 95 0 1 "" dgv166n21 16 52906758 52908713 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv524457,nsv527664 M 2026 0 2 "" nsv520631 16 52908713 52909236 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697527 S 2026 0 1 "" nsv1809 16 52956578 52991139 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1307 S 9 1 0 "" NA19240 dgv889e1 16 52965305 52987359 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1270,essv22796 M 271 0 0 "" NA12753 nsv442398 16 52967738 52977129 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" essv22696 16 52967948 52977133 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12004 nsv516140 16 52971231 52976802 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv684544,nssv669063,nssv655548,nssv664870,nssv652541,nssv697112,nssv693352,nssv693874,nssv680627,nssv664197,nssv657583,nssv672392,nssv656092,nssv679170,nssv668474,nssv689238,nssv657871,nssv670984 M 2026 0 18 "" esv2751609 16 53014100 53124735 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6981901,essv6981902,essv6981903 M 771 0 1 "" BEC_500 nsv519853 16 53050150 53050943 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv693662,nssv659087,nssv705440 M 2026 1 2 "" nsv520684 16 53050150 53051333 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694394 S 2026 0 1 "" nsv525032 16 53050150 53053287 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701073 S 2026 0 1 "" dgv890e1 16 53121783 53309710 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv5272,esv470 M 271 0 0 "" NA18624 nsv833238 16 53153646 53379117 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452750 S 95 1 0 "" dgv891e1 16 53310669 53336408 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1984,esv1224 M 271 0 0 "" NA18942 esv34604 16 53310669 53404883 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6980029,essv6980030 M 771 0 1 "" NA18942 nsv9444 16 53319925 53337148 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21532 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18942 nsv1811 16 53446684 53475782 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2954 S 9 1 0 "" NA18555 nsv526574 16 53642246 53648412 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702891 S 2026 0 1 "" nsv525340 16 53645726 53650919 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701458 S 2026 0 1 "" nsv833239 16 53793981 53945033 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452754,nssv1452770,nssv1452753,nssv1452751,nssv1452752,nssv1452759,nssv1452755,nssv1452758,nssv1452757,nssv1452756,nssv1452764,nssv1452760,nssv1452761,nssv1452762,nssv1452768,nssv1452763,nssv1452765,nssv1452766,nssv1452767,nssv1452772,nssv1452771,nssv1452769 M 95 22 0 "" nsv1812 16 53848161 53880727 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4215 S 9 1 0 "" NA12878 nsv507818 16 53996593 54002593 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620606,nssv619169 M 4 2 0 "" NA10860,NA15510 nsv518503 16 54059877 54062022 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695944 S 2026 0 1 "" nsv521337 16 54102050 54177075 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697945 S 2026 0 1 "" nsv519868 16 54188536 54199114 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697093 S 2026 1 0 "" nsv517827 16 54213856 54255528 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695232 S 2026 0 1 "" dgv892e1 16 54226897 54541091 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1251,essv6143,essv20105,esv407,essv889 M 271 0 0 "" NA07048,NA18532,NA18995,NA19000 nsv103423 16 54278604 54278604 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv122001 M 24 "" nsv1813 16 54291319 54323315 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5605 S 9 1 0 "" NA19129 nsv7284 16 54315625 54437783 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10958,nssv10957,nssv10091,nssv9316,nssv6671 M 9 0 0 "" NA12156,NA15510,NA18517,NA18956 nsv147 16 54333781 54403464 OTHER Inversion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv147 S 1 0 0 "" NA15510 nsv527963 16 54333986 54336256 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704473 S 2026 0 1 "" nsv526517 16 54351338 54351802 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702827 S 2026 0 1 "" nsv9445 16 54351821 54381093 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22536,nssv24913,nssv23298,nssv24963,nssv23157,nssv23746,nssv24359,nssv23031,nssv21562,nssv24938,nssv23129,nssv23540,nssv23270,nssv20539,nssv21592,nssv23568,nssv26366,nssv24385,nssv26607,nssv23101,nssv23719,nssv21622,nssv20509,nssv23671,nssv23512,nssv23773,nssv24411,nssv23643 M 31 0 13 Samples from several populations that are part of the HapMap project. "" NA07048,NA10839,NA10863,NA11830,NA12155,NA18517,NA18537,NA18563,NA18564,NA18572,NA18942,NA18972,NA18980 esv32885 16 54352307 54379863 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101492,essv98924,essv97507,essv93836,essv96783,essv100999,essv95062,essv98256,essv94756,essv93976,essv101403,essv94443,essv95604,essv93141,essv95241,essv94608,essv92999,essv92764,essv93613,essv96216,essv96745,essv98555,essv100018,essv99927,essv99671,essv94940,essv92525,essv96515,essv99300,essv97654,essv100274,essv100593,essv100372,essv99538,essv96349,essv94219 M 51 33 2 "" 21603,21606,21616,21634,21659,21693,21721,21772,21791,21802,21805,21808,21841,21863,21872,21932,21939,21944,21972,22007,22011,22085,22086,22217,22231,22233,22261,22275,22278,22286,22298,22300,22335,22371,22394 nsv442723 16 54353890 54379945 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv471382 16 54379001 54421563 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548167,nssv548178,nssv548156 M 3 "" nsv9446 16 54397874 54424758 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23800,nssv20569,nssv23185,nssv23089,nssv26620,nssv21652,nssv23326,nssv23596,nssv23729,nssv24988 M 31 10 0 Samples from several populations that are part of the HapMap project. "" NA07048,NA10839,NA12155,NA18517,NA18537,NA18563,NA18564,NA18572,NA18942,NA18980 nsv442724 16 54399883 54420211 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" esv32573 16 54400504 54422636 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv96875,essv94838,essv101369,essv95352,essv94566,essv92960,essv92750,essv96736,essv94896,essv92521,essv96546,essv100266 M 51 1 11 "" 21659,21791,21805,21872,21932,21939,21944,22011,22231,22233,22261,22286 nsv148 16 54407676 54413103 OTHER Inversion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv148 S 1 0 0 "" NA15510 nsv833240 16 54425485 54559961 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452773,nssv1452774 M 95 2 0 "" nsv103512 16 54502196 54502339 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv122090 M 24 "" nsv833241 16 54570840 54771366 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452775 S 95 0 1 "" nsv1814 16 54723934 54759593 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7252 S 9 0 1 "" NA12156 nsv833242 16 54850767 55038253 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452778,nssv1452777,nssv1452776 M 95 0 3 "" nsv519979 16 54897597 54958477 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697160 S 2026 0 1 "" nsv523649 16 54910406 54944970 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699450 S 2026 0 1 "" nsv521726 16 54922856 54944970 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694486 S 2026 0 1 "" nsv519346 16 54935249 54945545 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv674532,nssv677766,nssv680835,nssv688024,nssv655524,nssv657137,nssv700464 M 2026 0 7 "" nsv525929 16 54942221 54958477 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702134 S 2026 0 1 "" nsv833243 16 54966784 55140874 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452779 S 95 1 0 "" nsv1815 16 55137428 55150597 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7253 S 9 1 0 "" NA12156 nsv102988 16 55172686 55174527 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv121566 M 24 "" nsv833244 16 55269837 55431070 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452780 S 95 1 0 "" nsv520661 16 55315317 55317940 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv687046,nssv673670 M 2026 0 2 "" esv33108 16 55448509 55475034 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98824 S 51 0 1 "" 21606 nsv526264 16 55470404 55484294 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702537 S 2026 0 1 "" nsv519897 16 55503698 55503922 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697113 S 2026 0 1 "" nsv524073 16 55552737 55554734 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699941 S 2026 0 1 "" nsv527160 16 55564693 55564854 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703554 S 2026 1 0 "" nsv522759 16 55729834 55741226 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698398 S 2026 0 1 "" nsv509621 16 55840107 55891161 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619691 S 4 1 0 "" NA10860 esv33351 16 55902640 55902692 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93604 S 51 0 1 "" 21972 nsv833245 16 56025486 56176032 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452781 S 95 0 1 "" esv33007 16 56163417 56165527 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv95932 S 51 0 1 "" 22127 nsv833246 16 56168629 56339281 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452783,nssv1452782,nssv1452784 M 95 0 3 "" nsv457490 16 56281253 56335164 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534671 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00800 esv33209 16 56283390 56285348 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98864,essv93856,essv98289,essv97799,essv95960,essv93552,essv93325,essv92597,essv97743,essv100111,essv100573,essv100437,essv98435,essv96385 M 51 0 14 "" 21606,21634,21772,21837,22127,22128,22170,22233,22278,22286,22298,22300,22352,22371 nsv103248 16 56285215 56285278 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv121826 M 24 "" nsv525464 16 56305664 56424192 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701592 S 2026 1 0 "" nsv528250 16 56307105 56377610 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704816 S 2026 0 1 "" nsv509622 16 56311517 56417889 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623697 S 4 1 0 "" NA18994 nsv103331 16 56336708 56336757 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv121909 M 24 "" nsv103302 16 56336759 56336808 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv121880 M 24 "" nsv817732 16 56344528 56351096 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417245 S 112 0 1 "" NA18577 nsv523237 16 56344528 56377610 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698964 S 2026 0 1 "" nsv526855 16 56376436 56377610 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703213 S 2026 0 1 "" nsv103820 16 56479835 56479835 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv122398 M 24 "" nsv523659 16 56563770 56581841 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699460 S 2026 0 1 "" nsv1816 16 56564857 56609576 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7254 S 9 0 1 "" NA12156 nsv457491 16 56764704 56825937 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534672 S 1557 0 1 "" 1780862101_A nsv528512 16 57071314 57106515 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705119 S 2026 0 1 "" nsv527052 16 57078591 57100402 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703428 S 2026 0 1 "" dgv893e1 16 57136506 57433538 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv5061,essv22916,essv24826,esv225,essv19221 M 271 0 0 "" NA07000,NA10838,NA12760,NA18576 nsv521338 16 57138020 57211339 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697946 S 2026 0 1 "" nsv103597 16 57172379 57172465 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv122175 M 24 "" nsv511049 16 57184276 57323395 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621638 S 4 0 0 "" NA15510 nsv507819 16 57191895 57197895 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617912,nssv619170 M 4 2 0 "" CHM,NA10860 esv33503 16 57199190 57199231 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93760 S 51 0 1 "" 21972 nsv509623 16 57203620 57323395 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623698 S 4 1 0 "" NA18994 nsv510686 16 57203620 57323395 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618937 S 4 0 1 "" NA10860 nsv9448 16 57204170 57208233 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23850,nssv23213,nssv26695,nssv23354,nssv23117,nssv22464,nssv23672,nssv26411,nssv25822,nssv24507,nssv22566,nssv25362,nssv22562,nssv26633,nssv24437,nssv27043,nssv20620,nssv25013,nssv26471,nssv23522,nssv23624,nssv23018,nssv23827,nssv20599,nssv23756,nssv21682,nssv24218,nssv28115 M 31 28 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10863,NA11830,NA12155,NA12740,NA12802,NA18502,NA18504,NA18517,NA18537,NA18552,NA18563,NA18564,NA18572,NA18853,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19144,NA19173,NA19221,NA19240 nsv103378 16 57204692 57207765 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv121956 M 24 "" esv32972 16 57204829 57207991 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101501,essv101206,essv93803,essv94803,essv101413,essv94318,essv97877,essv95590,essv95264,essv101625,essv98970,essv92800,essv93784,essv96221,essv96704,essv97238,essv99818,essv95970,essv94962,essv92547,essv99237,essv100198,essv99373,essv98508,essv94174 M 51 12 13 "" 21603,21618,21634,21791,21805,21808,21837,21841,21872,21909,21938,21944,21972,22007,22011,22075,22086,22127,22231,22233,22275,22286,22335,22352,22394 nsv528513 16 57230264 57275375 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705120 S 2026 0 1 "" esv33099 16 57230273 57233686 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv96779,essv94812,essv95700,essv95269,essv96076,essv93515,essv94867,essv92655,essv99248,essv100384 M 51 10 0 "" 21659,21791,21841,21872,22127,22128,22231,22233,22275,22300 nsv9449 16 57230452 57235664 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23854,nssv25387,nssv22592,nssv21712,nssv23652,nssv23877 M 31 0 6 Samples from several populations that are part of the HapMap project. "" NA07029,NA10839,NA12740,NA18537,NA18942,NA19240 nsv1817 16 57320019 57350992 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6672 S 9 1 0 "" NA12156 nsv1818 16 57363489 57372424 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9530 S 9 1 0 "" NA18507 nsv520998 16 57365043 57391720 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv689665,nssv679618 M 2026 2 0 "" nsv9450 16 57403711 57405707 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26426 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18972 nsv522382 16 57422523 57428780 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695162 S 2026 0 1 "" nsv523137 16 57535751 57598734 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698842 S 2026 0 1 "" nsv526025 16 57568002 57577943 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702255 S 2026 1 0 "" nsv1819 16 57602586 57632359 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7255 S 9 0 1 "" NA12156 nsv833247 16 57689699 57851028 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452785 S 95 0 1 "" nsv528943 16 57735040 57739076 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705634 S 2026 0 1 "" nsv833249 16 57840451 58018524 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452786 S 95 1 0 "" nsv9451 16 58192741 58590342 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22494 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18975 esv2422221 16 58195603 58409144 CNV Deletion Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161563 S 181 0 1 "" ND04274 nsv103210 16 58254732 58254732 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv121788 M 24 "" nsv507820 16 58342343 58348343 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617913,nssv623213 M 4 2 0 "" CHM,NA18994 nsv1820 16 58361199 58370424 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6673 S 9 0 1 "" NA12156 nsv523260 16 58388338 58473742 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698994 S 2026 0 1 "" nsv103575 16 58620189 58620428 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv122153 M 24 "" dgv351n27 16 58626771 58706315 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv457493,nsv457492 M 1557 0 2 "" HGDP00109,NINDS_212 nsv442399 16 58640103 58654487 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv521209 16 58644831 58652880 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv688201,nssv685178 M 2026 0 2 "" nsv833250 16 58774974 58934881 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452787 S 95 0 1 "" nsv103711 16 58994522 58996802 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv122289 M 24 "" nsv833251 16 59038955 59186708 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452788 S 95 1 0 "" nsv833252 16 59218254 59401751 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452789 S 95 0 1 "" nsv1822 16 59220591 59254728 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7256 S 9 1 0 "" NA12156 nsv833253 16 59300869 59479079 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452794,nssv1452793,nssv1452792,nssv1452791,nssv1452790 M 95 3 2 "" nsv1823 16 59302878 59347810 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7257 S 9 0 1 "" NA12156 nsv457494 16 59314368 59353942 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534675 S 1557 0 1 "" 1782681096_A nsv507821 16 59331696 59337696 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623214,nssv620607 M 4 2 0 "" NA15510,NA18994 nsv510687 16 59465773 59473174 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618938 S 4 0 1 "" NA10860 nsv510688 16 59662035 59666401 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622709 S 4 0 1 "" NA18994 nsv833254 16 59673241 59825239 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452796,nssv1452795,nssv1452797 M 95 2 1 "" nsv457498 16 59681209 59724757 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534677 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01076 nsv457499 16 59681699 59761358 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534678 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00153 nsv833255 16 59936250 60093791 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452798 S 95 1 0 "" nsv1824 16 60120696 60145151 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9531 S 9 1 0 "" NA18507 nsv833256 16 60150199 60328182 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452799 S 95 1 0 "" nsv817733 16 60358369 60382024 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417939 S 112 1 0 "" NA18852 nsv507822 16 60398361 60404361 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617914 S 4 1 0 "" CHM nsv457500 16 60579381 60640616 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534679 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00007 nsv103700 16 60604363 60604695 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv122278 M 24 "" nsv527799 16 60761403 60762679 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704292 S 2026 0 1 "" nsv528840 16 60886020 60895662 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705517 S 2026 0 1 "" nsv1825 16 60937490 60964468 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7258 S 9 0 1 "" NA12156 nsv1826 16 61071571 61117182 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6675,nssv5606,nssv4217 M 9 0 3 "" NA12156,NA12878,NA19129 nsv510689 16 61085213 61113638 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620090 S 4 0 1 "" NA15510 nsv521476 16 61111714 61116069 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698088 S 2026 0 1 "" nsv1827 16 61165340 61210704 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6676 S 9 0 1 "" NA12156 nsv833257 16 61223623 61403177 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452800 S 95 1 0 "" nsv457502 16 61611059 61678146 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534680 S 1557 0 1 "" 1780862001_A nsv457506 16 61635272 61678146 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534681 S 1557 0 1 "" 1798860084_A nsv457508 16 61635272 61751400 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534682 S 1557 0 1 "" NINDS_130 nsv524417 16 61775362 61787984 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700343 S 2026 0 1 "" nsv521142 16 61839581 61960443 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv685839,nssv682878,nssv692374 M 2026 3 0 "" nsv833258 16 61914237 62103285 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452801 S 95 1 0 "" nsv1828 16 61924339 61969205 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7259 S 9 0 1 "" NA12156 nsv521466 16 61986281 62033825 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698077 S 2026 0 1 "" nsv457509 16 62062832 62106071 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534683 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00766 nsv519865 16 62083717 62169099 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv659158,nssv661226,nssv704228 M 2026 0 3 "" nsv1829 16 62213442 62257672 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2144 S 9 0 1 "" NA18555 nsv525656 16 62339132 62341057 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701811 S 2026 0 1 "" nsv525019 16 62360994 62372315 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701058 S 2026 1 0 "" nsv507823 16 62587711 62593711 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619171 S 4 1 0 "" NA10860 nsv1830 16 62591051 62606391 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1308 S 9 1 0 "" NA19240 nsv516354 16 62630101 62664548 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv655097,nssv680262,nssv689577,nssv682288,nssv667746,nssv690039,nssv685455,nssv674557,nssv677672,nssv684438,nssv659776,nssv684224,nssv676176,nssv684047,nssv661877,nssv682059,nssv686763,nssv694162 M 2026 0 18 "" nsv817734 16 62633247 62664548 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418321,nssv1416681,nssv1418322 M 112 0 3 "" NA19093,NA19094,NA19119 nsv442401 16 62636133 62671716 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" essv12913 16 62639947 62685365 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19094 dgv894e1 16 62639947 62714192 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv8405,essv14839,esv1161 M 271 0 0 "" NA19093,NA19119 nsv457511 16 62676270 62718232 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534684 S 1557 0 1 "" 1782681086_A nsv527198 16 62690674 62696633 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703597 S 2026 0 1 "" nsv519120 16 62696633 62704590 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696596 S 2026 0 1 "" nsv457512 16 63444855 63492934 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534685 S 1557 0 1 "" 1780854464_A nsv833260 16 63608148 63776260 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452802,nssv1452803 M 95 0 2 "" nsv1831 16 63629477 63663606 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2145 S 9 0 1 "" NA18555 nsv509625 16 63719954 63738033 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619692,nssv621027 M 4 2 0 "" NA10860,NA15510 nsv522506 16 63739456 63740059 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705874 S 2026 0 1 "" nsv525526 16 63815392 63865522 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701661 S 2026 0 1 "" nsv520064 16 63844371 63844889 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv660370,nssv661227 M 2026 0 2 "" nsv525489 16 63844371 63897395 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701620 S 2026 1 0 "" nsv1833 16 63916434 63961301 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7260 S 9 0 1 "" NA12156 nsv833261 16 63973728 64146306 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452810,nssv1452808,nssv1452807,nssv1452805,nssv1452806,nssv1452804,nssv1452811,nssv1452815,nssv1452809,nssv1452814,nssv1452813,nssv1452812,nssv1452816,nssv1452817,nssv1452820,nssv1452819,nssv1452818 M 95 0 17 "" nsv103728 16 64039689 64039689 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv122306 M 24 "" nsv525465 16 64097923 64107063 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701593 S 2026 1 0 "" nsv525341 16 64249982 64252852 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701459 S 2026 1 0 "" nsv522851 16 64392614 64398663 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698505 S 2026 0 1 "" nsv833262 16 64407359 64573732 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452821 S 95 1 0 "" nsv1834 16 64446819 64448584 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1310 S 9 1 0 "" NA19240 nsv516537 16 64461307 64462508 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv663643,nssv668986 M 2026 0 2 "" nsv1835 16 64572910 64598247 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10092 S 9 1 0 "" NA18956 nsv528159 16 64575973 64585989 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704707 S 2026 0 1 "" nsv833263 16 64588814 64799644 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452822 S 95 0 1 "" nsv1836 16 64707553 64740888 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1311 S 9 1 0 "" NA19240 nsv524590 16 64796836 64801256 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700549 S 2026 0 1 "" nsv833264 16 64890096 65062473 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452823,nssv1452828,nssv1452827,nssv1452826,nssv1452824,nssv1452825 M 95 6 0 "" nsv1837 16 64919562 64953320 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4218 S 9 1 0 "" NA12878 nsv1838 16 65011521 65045209 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7261 S 9 1 0 "" NA12156 nsv1839 16 65093251 65128488 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1312 S 9 1 0 "" NA19240 nsv103310 16 65380695 65381028 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv121888 M 24 "" nsv510690 16 65408689 65449685 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622710 S 4 0 1 "" NA18994 nsv509626 16 65574766 65635408 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621028 S 4 1 0 "" NA15510 nsv1840 16 65598250 65632953 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4219 S 9 1 0 "" NA12878 nsv516064 16 65631053 65682565 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv683506,nssv673651,nssv665949,nssv660991 M 2026 4 0 "" nsv509627 16 65669197 65705732 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621029 S 4 1 0 "" NA15510 nsv524363 16 65727933 66662975 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700274 S 2026 0 1 "" nsv522852 16 65744712 66662975 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698506 S 2026 1 0 "" nsv524492 16 65765434 65885954 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700430 S 2026 0 1 "" nsv457513 16 65772821 65874101 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534686 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00857 nsv833265 16 65919118 65964706 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452829 S 95 0 1 "" nsv1841 16 65944631 65978180 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7262 S 9 1 0 "" NA12156 nsv833266 16 65999968 66162825 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452830 S 95 0 1 "" nsv1842 16 66296406 66317090 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1313,nssv5609,nssv6677 M 9 3 0 "" NA12156,NA19129,NA19240 nsv1844 16 66459729 66508760 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9963,nssv4220,nssv1314 M 9 0 3 "" NA12878,NA18507,NA19240 nsv442402 16 66492225 66495131 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv1845 16 66645740 66662305 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7264 S 9 0 1 "" NA12156 nsv1846 16 66771759 66805166 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7265 S 9 1 0 "" NA12156 nsv510691 16 66857931 66916835 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622711 S 4 0 1 "" NA18994 nsv519368 16 66902197 66902537 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696814 S 2026 0 1 "" nsv1847 16 66956175 66988155 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10093 S 9 1 0 "" NA18956 nsv1848 16 67008183 67041762 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4221 S 9 1 0 "" NA12878 nsv1849 16 67093532 67124636 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2146 S 9 1 0 "" NA18555 nsv457515 16 67155508 67482002 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534687 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00512 nsv522753 16 67196839 67198889 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698390 S 2026 0 1 "" nsv833267 16 67240000 67415305 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452831 S 95 1 0 "" nsv103068 16 67330369 67331573 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv121646 M 24 "" nsv817735 16 67414790 67420815 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418323 S 112 1 0 "" NA19092 esv2751611 16 67453255 67604246 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6989264,essv6989522 M 771 0 1 "" BEC_48 nsv833268 16 67535349 67696999 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452832 S 95 0 1 "" nsv1850 16 67712358 67746766 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7266 S 9 0 1 "" NA12156 nsv1851 16 67753864 67796337 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4222,nssv7267,nssv2147,nssv5610 M 9 4 0 "" NA12156,NA12878,NA18555,NA19129 nsv509628 16 67767331 67839589 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623699,nssv619693,nssv621030 M 4 3 0 "" NA10860,NA15510,NA18994 nsv103191 16 67800165 67802161 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv121769 M 24 "" nsv523736 16 67911088 67913174 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699552 S 2026 0 1 "" nsv509629 16 67967902 68026641 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621031 S 4 1 0 "" NA15510 nsv1852 16 68123622 68168463 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7268 S 9 0 1 "" NA12156 nsv517207 16 68302646 68329415 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv663543,nssv662557,nssv683447,nssv653708 M 2026 0 4 "" nsv524364 16 68302646 68360944 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700275 S 2026 0 1 "" nsv103749 16 68329815 68329815 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv122327 M 24 "" nsv528905 16 68387376 68387829 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705589 S 2026 0 1 "" dgv895e1 16 68412623 68870723 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv18240,essv3075,essv861,essv6721,essv13148,essv16525,essv12320,essv4275,essv13081,essv13921,esv596,essv2065,essv11725,essv21833,essv17521,essv2275,essv4470 M 271 0 0 "" NA11839,NA12057,NA12762,NA18552,NA18603,NA18608,NA18852,NA18854,NA18949,NA18966,NA18981,NA19000,NA19102,NA19138,NA19154,NA19210 esv33157 16 68497911 68501070 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99868 S 51 0 1 "" 22086 nsv509630 16 68510877 68587894 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621032,nssv623700,nssv618118 M 4 3 0 "" CHM,NA15510,NA18994 nsv1853 16 68519797 68826357 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2148,nssv1315 M 9 0 2 "" NA18555,NA19240 nsv9452 16 68533527 68565700 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21742,nssv26441,nssv23550,nssv23904,nssv22524,nssv26485,nssv24533 M 31 0 7 Samples from several populations that are part of the HapMap project. "" NA12740,NA18552,NA18942,NA18972,NA18975,NA19132,NA19144 nsv833269 16 68598107 68799077 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452837,nssv1452838,nssv1452833,nssv1452836,nssv1452835,nssv1452834,nssv1452839 M 95 0 7 "" nsv9453 16 68602144 68667058 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23783,nssv23881,nssv23730,nssv26455,nssv22554,nssv21802 M 31 0 6 Samples from several populations that are part of the HapMap project. "" NA18537,NA18942,NA18972,NA18975,NA18980,NA19007 essv1325 16 68609885 68745051 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18973 nsv517743 16 68621490 68693706 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv674145,nssv653078,nssv660558 M 2026 0 3 "" nsv103190 16 68653098 68655095 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv121768 M 24 "" nsv469646 16 68662992 68814400 CNV Gain Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649573 M 265 4 0 Samples from several populations that are part of the HapMap project. "" nsv471695 16 68662993 68814400 CNV Loss Sharp et al 2005 15918152 BAC_aCGH,FISH Eichler Segmental Duplication BAC array nssv549887,nssv549878,nssv549880,nssv549879,nssv549884,nssv549890,nssv549894,nssv549889,nssv549882,nssv549892,nssv549881,nssv549891,nssv549888,nssv549883,nssv549886,nssv549885,nssv549893 M 48 0 17 "" NA10493,NA10494,NA10967,NA10970,NA10971,NA10976,NA10979,NA11323,NA11521,NA15729,NA16689,NA17014,NA17016,NA17051,NA17052,NA17058,P86GA esv33745 16 68674100 68877374 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101551,essv101474,essv98850,essv97585,essv101233,essv98211,essv93997,essv94311,essv94383,essv95692,essv93041,essv101781,essv101772,essv95907,essv92982,essv92825,essv96654,essv99756,essv95991,essv99696,essv92574,essv99298,essv100159,essv100519,essv99446,essv96274 M 51 18 5 "" 21603,21606,21616,21618,21772,21802,21808,21841,21863,21909,21911,21939,21944,22011,22086,22127,22217,22233,22275,22286,22298,22335,22371 nsv9454 16 68681902 68685710 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23145,nssv21161 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA07048,NA12872 nsv103694 16 68683656 68683656 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv122272 M 24 "" dgv896e1 16 68690128 68870723 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv23397,essv16914,essv7144 M 271 0 0 "" NA10854,NA18547,NA19205 nsv9455 16 68701593 68792833 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21191,nssv26469,nssv20629,nssv26499,nssv24559,nssv23412,nssv23931,nssv24244,nssv21832,nssv25412,nssv25038,nssv22584,nssv20650,nssv23578,nssv25063,nssv26513,nssv23710,nssv24463,nssv26736 M 31 1 16 Samples from several populations that are part of the HapMap project. "" NA10839,NA11830,NA12155,NA12740,NA12802,NA12872,NA18502,NA18552,NA18564,NA18572,NA18942,NA18972,NA18975,NA19132,NA19144,NA19173,NA19240 nsv471391 16 68705030 68752685 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548148,nssv548147,nssv548149 M 3 "" nsv482195 16 68705030 68752685 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558556 S 1 1 0 "" KB1 nsv442725 16 68709061 68755857 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv7285 16 68716283 72986007 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9532,nssv10094,nssv10959,nssv5611 M 9 0 0 "" NA15510,NA18507,NA18956,NA19129 nsv833271 16 68743195 68910835 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452841,nssv1452842,nssv1452840,nssv1452846,nssv1452843,nssv1452845,nssv1452844 M 95 1 6 "" nsv482196 16 68765429 68778297 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558557 S 1 1 0 "" KB1 nsv833272 16 68927270 69127224 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452847,nssv1452848,nssv1452849 M 95 0 3 "" nsv103855 16 69123708 69123761 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv122433 M 24 "" nsv517391 16 69223911 69397991 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv685729,nssv688907,nssv692963,nssv661199,nssv692375,nssv673990,nssv659499,nssv683671,nssv655688,nssv690212,nssv688332,nssv652655,nssv661274,nssv687636,nssv703722,nssv680962,nssv666998,nssv666646,nssv651882,nssv668450,nssv653188,nssv665897 M 2026 0 22 "" nsv1856 16 69262304 69275762 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5612 S 9 1 0 "" NA19129 dgv897e1 16 69364623 69874484 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv763,essv14439,essv14529,essv13304,essv13256,essv17388,essv10659 M 271 0 0 "" NA18855,NA19201,NA19202 nsv103278 16 69418137 69426279 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv121856 M 24 "" nsv817736 16 69428532 69471485 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416407 S 112 1 0 "" NA18855 nsv103320 16 69493393 69495880 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv121898 M 24 "" nsv1857 16 69500855 69545517 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7269 S 9 0 1 "" NA12156 nsv103129 16 69535301 69537395 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv121707 M 24 "" nsv1858 16 69564484 69589769 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7270,nssv10095 M 9 2 0 "" NA12156,NA18956 nsv1859 16 69723588 69744131 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7271 S 9 0 1 "" NA12156 nsv1860 16 69826657 69871353 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7273 S 9 0 1 "" NA12156 nsv509631 16 69870746 69928016 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619694,nssv618119,nssv623701 M 4 3 0 "" CHM,NA10860,NA18994 nsv511050 16 69870746 69928016 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621639 S 4 0 0 "" NA15510 nsv1861 16 69871176 69890120 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1316,nssv4223,nssv5613 M 9 3 0 "" NA12878,NA19129,NA19240 nsv528229 16 69889229 69916438 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704791 S 2026 0 1 "" nsv520747 16 69913636 69916438 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv674949,nssv690563 M 2026 0 2 "" nsv1862 16 70492292 70526487 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7274 S 9 1 0 "" NA12156 nsv516948 16 70523226 70546229 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv662590,nssv653484 M 2026 0 2 "" nsv833273 16 70529306 70710355 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452850 S 95 0 1 "" dgv898e1 16 70533845 70831848 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv9108,essv11832,essv12393,essv10017,essv8293,essv16257,essv13137,essv14291,essv11500,essv13434,esv186,essv8855,essv15833,essv17324,essv15666,essv16723,essv11897,essv10377,essv14758,essv15496,essv17255 M 271 0 0 "" NA18503,NA18505,NA18508,NA18521,NA18856,NA18860,NA18912,NA19099,NA19102,NA19103,NA19142,NA19159,NA19161,NA19173,NA19192,NA19194,NA19221,NA19222,NA19223,NA19238 nsv521097 16 70558637 70559809 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv682109,nssv689754 M 2026 0 2 "" nsv103854 16 70567681 70568960 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv122432 M 24 "" nsv9456 16 70642262 70675823 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25843,nssv27053,nssv25864,nssv20659,nssv25437,nssv25088,nssv28117,nssv26646,nssv24326,nssv26659,nssv24270 M 31 7 1 Samples from several populations that are part of the HapMap project. "" NA12155,NA18504,NA18517,NA18572,NA18860,NA19173,NA19221,NA19240 nsv817737 16 70645832 70665594 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417511 S 112 0 1 "" NA18968 nsv1863 16 70653305 70654528 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1318 S 9 1 0 "" NA19240 nsv1864 16 70655469 70675458 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9317,nssv1319 M 9 2 0 "" NA18517,NA19240 nsv1865 16 70706858 70741353 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1320 S 9 1 0 "" NA19240 nsv1867 16 70909763 70954840 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7275 S 9 0 1 "" NA12156 nsv523524 16 71021961 71193175 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699297 S 2026 0 1 "" nsv518234 16 71101948 71193175 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695663 S 2026 0 1 "" esv2751612 16 71190800 71209415 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6985589,essv6981506 M 771 1 0 "" BEC_287 nsv1868 16 71359463 71377555 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6678 S 9 0 1 "" NA12156 nsv1869 16 71614493 71645862 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10096 S 9 1 0 "" NA18956 nsv1870 16 71717200 71720274 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10097 S 9 1 0 "" NA18956 esv33477 16 71755303 71755519 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv95471 S 51 1 0 "" 21847 esv32791 16 71771129 71771704 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv96677,essv100273 M 51 2 0 "" 22011,22286 nsv524964 16 71875058 71881468 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700986 S 2026 0 1 "" nsv833274 16 71884018 72039267 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452851 S 95 0 1 "" nsv517726 16 71947785 71948643 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv673161,nssv653022,nssv688394,nssv670066 M 2026 0 4 "" nsv523261 16 71957315 71959789 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698995 S 2026 0 1 "" nsv515781 16 72016335 72017573 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv659221,nssv664757,nssv688655,nssv658494,nssv686103,nssv682398,nssv686493 M 2026 0 7 "" nsv526298 16 72017573 72023455 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702579 S 2026 0 1 "" nsv1871 16 72162507 72207421 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7276 S 9 0 1 "" NA12156 nsv457519 16 72222249 72599222 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534689 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00552 nsv525676 16 72298286 72306271 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701833 S 2026 0 1 "" dgv899e1 16 72330599 72332356 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv21898,esv1164 M 271 0 0 "" NA10838 nsv833275 16 72398500 72601213 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452852 S 95 0 1 "" nsv525758 16 72456853 72610057 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701926 S 2026 0 1 "" nsv1872 16 72473951 72509291 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1321 S 9 1 0 "" NA19240 nsv1873 16 72531877 72558781 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7277 S 9 0 1 "" NA12156 nsv103234 16 72538814 72538881 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv121812 M 24 "" nsv523872 16 72544272 72550553 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699713 S 2026 0 1 "" nsv523276 16 72617272 72619704 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699010 S 2026 0 1 "" nsv1874 16 72626662 72671701 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7278 S 9 0 1 "" NA12156 nsv526777 16 72628133 72666395 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703129 S 2026 1 0 "" nsv103308 16 72701669 72701669 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv121886 M 24 "" nsv519670 16 72714957 72720052 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv657494,nssv692706,nssv686597,nssv679197,nssv672919 M 2026 0 5 "" nsv833276 16 72773566 72996369 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452854,nssv1452853 M 95 0 2 "" nsv1875 16 72814032 72849337 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4225 S 9 1 0 "" NA12878 nsv1876 16 72829055 72874014 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7279 S 9 0 1 "" NA12156 dgv900e1 16 72892281 73055707 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2982,essv5255,essv6177,essv11731,essv7194,essv18232,essv4229,essv16547,essv4793,essv16421,essv1995 M 271 0 0 "" NA12057,NA18532,NA18547,NA18603,NA18620,NA18624,NA18949,NA18981,NA19139,NA19154,NA19210 dgv901e1 16 72892281 73144686 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv16822,essv13136,essv12323,esv65,essv13087,essv13888 M 271 0 0 "" NA18852,NA18854,NA19102,NA19138,NA19205 nsv833277 16 72892288 73055634 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452855,nssv1452856,nssv1452857,nssv1452858 M 95 0 4 "" nsv509632 16 72903043 73063016 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619695 S 4 1 0 "" NA10860 nsv9457 16 72918157 73022647 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24352,nssv23440,nssv24489,nssv24645,nssv26527,nssv26541,nssv21892,nssv26747,nssv26483,nssv21862,nssv24671,nssv23606,nssv23958,nssv25113 M 31 1 10 Samples from several populations that are part of the HapMap project. "" NA11830,NA12155,NA12740,NA18502,NA18552,NA18564,NA18942,NA18972,NA19132,NA19144,NA19173 esv32572 16 72931572 73012790 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101597,essv98896,essv97548,essv94398,essv101686,essv100581 M 51 6 0 "" 21603,21606,21616,21808,21909,22298 nsv442726 16 72953795 73009537 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv833278 16 72973445 73141624 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452860,nssv1452859 M 95 0 2 "" nsv833279 16 73048247 73220574 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452862,nssv1452861 M 95 0 2 "" esv32537 16 73143239 73150640 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99174 S 51 1 0 "" 22275 nsv517513 16 73301237 73370177 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv669555,nssv683889,nssv665558,nssv696370,nssv688466,nssv652240,nssv652381,nssv667941 M 2026 0 8 "" nsv457520 16 73316485 73464941 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534690 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00538 nsv833280 16 73413312 73634728 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452863 S 95 0 1 "" nsv516231 16 73431014 73433447 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv656568,nssv661804,nssv679277,nssv666968,nssv696371,nssv654884 M 2026 0 6 "" nsv526213 16 73431014 73547562 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702477 S 2026 0 1 "" nsv507824 16 73442442 73448442 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617915,nssv619172 M 4 2 0 "" CHM,NA10860 nsv510420 16 73522747 73528747 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622263 S 4 0 1 "" NA10860 nsv103814 16 73635206 73639358 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv122392 M 24 "" nsv1878 16 73647036 73658919 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10098 S 9 1 0 "" NA18956 nsv833282 16 73711672 73888135 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452865,nssv1452864,nssv1452866 M 95 2 1 "" nsv7286 16 73758498 73855716 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2149,nssv9533,nssv9534,nssv10961,nssv1322,nssv2150,nssv9318,nssv10099,nssv5615,nssv1323,nssv10100,nssv6679,nssv5614,nssv6680,nssv4227,nssv4226 M 9 0 0 "" NA12156,NA12878,NA15510,NA18507,NA18517,NA18555,NA18956,NA19129,NA19240 nsv516504 16 73780992 73863903 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv668725,nssv697410,nssv704708,nssv673339,nssv669596,nssv675086,nssv697679 M 2026 1 6 "" nsv523405 16 73785470 73900347 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699156 S 2026 0 1 "" nsv482197 16 73795496 73798573 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558558 S 1 1 0 "" KB1 nsv149 16 73806806 73844683 OTHER Inversion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv149 S 1 0 0 "" NA15510 nsv482198 16 73810385 73816322 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558559 S 1 1 0 "" KB1 nsv9459 16 73831668 73835001 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25491 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19240 nsv833283 16 73859676 73949809 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452867 S 95 0 1 "" nsv1879 16 73902081 73936793 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4228 S 9 1 0 "" NA12878 esv2422358 16 73939263 74014264 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161262 S 181 1 0 "" ND00728 nsv1880 16 73955342 73984627 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10102 S 9 1 0 "" NA18956 nsv525232 16 73959862 73996633 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701321 S 2026 1 0 "" nsv525466 16 73959862 73996633 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701594 S 2026 0 1 "" dgv902e1 16 73977115 74134472 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv14329,esv209,essv12153 M 271 0 0 "" NA19101,NA19194 nsv103341 16 73987406 73988247 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv121919 M 24 "" esv32560 16 74023266 74028956 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99398 S 51 0 1 "" 22335 nsv516019 16 74024197 74030833 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv683339,nssv693493,nssv657988,nssv671569,nssv660559,nssv687105,nssv671442,nssv665764,nssv669011,nssv668952,nssv690364,nssv692119 M 2026 0 12 "" nsv521596 16 74024197 74044149 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698213 S 2026 0 1 "" nsv525955 16 74030833 74185846 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702163 S 2026 0 1 "" nsv9460 16 74033190 74037051 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24378,nssv25138 M 31 1 1 Samples from several populations that are part of the HapMap project. "" NA12155,NA19173 nsv457521 16 74045259 74161426 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534691 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00538 nsv516675 16 74086012 74129513 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv658429,nssv654519,nssv671774,nssv696328,nssv681159,nssv702681,nssv694894,nssv687749,nssv670094,nssv690444,nssv676531,nssv694271 M 2026 11 1 "" nsv9461 16 74093624 74133683 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27063 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18860 dgv352n27 16 74097386 74145467 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv457525,nsv457524,nsv457523,nsv457526,nsv457527,nsv457522 M 1557 6 0 "" HGDP00017,HGDP00629,HGDP00738,HGDP00912,HGDP00913,HGDP00924 nsv442728 16 74115584 74133500 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv817738 16 74115984 74129513 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418513,nssv1418512 M 112 2 0 "" NA19192,NA19194 dgv10e24 16 74116046 74137638 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH esv2750606,esv2750623,esv2750743 M 51 0 3 "" 21693,21802,21847 nsv103830 16 74117549 74117549 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv122408 M 24 "" nsv1881 16 74243715 74276942 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7280 S 9 1 0 "" NA12156 nsv528716 16 74479671 74554851 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705366 S 2026 0 1 "" nsv510421 16 74531341 74537341 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618418 S 4 0 1 "" CHM nsv817739 16 74563413 74576356 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417512 S 112 0 1 "" NA18968 esv34693 16 74566800 74579034 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6980197,essv6980198 M 771 0 1 "" NA18968 dgv903e1 16 74567282 74579010 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1712,esv918 M 271 0 0 "" NA18968 dgv167n21 16 74578601 74612987 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv521196,nsv520681 M 2026 0 2 "" nsv1882 16 74589698 74641087 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10103,nssv1324,nssv6681,nssv2151 M 9 4 0 "" NA12156,NA18555,NA18956,NA19240 nsv509633 16 74611225 74637213 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619696,nssv623702,nssv621033,nssv618120 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv833284 16 74615242 74763490 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452868,nssv1452869 M 95 2 0 "" nsv833285 16 74693846 74902899 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452870 S 95 1 0 "" nsv515492 16 74701279 74705277 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv668475,nssv684864,nssv653304,nssv662622 M 2026 0 4 "" nsv103346 16 74726150 74726254 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv121924 M 24 "" nsv524334 16 74727232 74754535 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700241 S 2026 0 1 "" nsv518235 16 74760783 74768987 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695664 S 2026 0 1 "" nsv520847 16 74771490 74788279 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697647 S 2026 0 1 "" nsv833286 16 74801231 75001784 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452871 S 95 1 0 "" dgv353n27 16 74808776 74850895 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv457531,nsv457532 M 1557 0 2 "" 1780854462_A,HGDP00716 dgv904e1 16 74819177 74829497 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1428,essv5762 M 271 0 0 "" NA18540 nsv9462 16 74822628 74849251 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28119 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19221 nsv520999 16 74829069 74835396 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697729 S 2026 0 1 "" nsv457536 16 74829069 74853099 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534701 S 1557 0 1 "" NINDS_178 nsv518584 16 74913896 74924687 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696031 S 2026 0 1 "" nsv457537 16 74976212 75001854 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534702 S 1557 0 1 "" 1782681093_A nsv457538 16 74988028 75010544 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534703 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00088 nsv518437 16 75001854 75007489 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695873 S 2026 0 1 "" nsv833287 16 75040324 75223927 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452872,nssv1452873 M 95 2 0 "" nsv1883 16 75076716 75120613 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2152,nssv4229,nssv6682 M 9 0 3 "" NA12156,NA12878,NA18555 nsv511051 16 75096234 75109924 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618626 S 4 0 0 "" CHM esv2422474 16 75101609 75683063 CNV Deletion Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161292 S 181 0 1 "" ND04312 nsv528144 16 75154359 75155458 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704691 S 2026 1 0 "" nsv527859 16 75163254 75280001 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704357 S 2026 0 1 "" nsv833288 16 75178859 75342698 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452874 S 95 1 0 "" nsv517913 16 75193464 75198204 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695324 S 2026 1 0 "" nsv442729 16 75224186 75226991 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv457539 16 75335165 75639177 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534704 S 1557 0 1 "" NINDS_163 nsv1884 16 75414341 75426945 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9535 S 9 1 0 "" NA18507 nsv833289 16 75418543 75576397 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452875 S 95 1 0 "" nsv524352 16 75446472 75492651 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700261 S 2026 0 1 "" nsv1885 16 75458565 75489855 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4230 S 9 1 0 "" NA12878 nsv833290 16 75463192 75644638 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452876 S 95 1 0 "" nsv507825 16 75464389 75470389 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619173,nssv620608 M 4 2 0 "" NA10860,NA15510 nsv521663 16 75527099 75649112 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698281 S 2026 0 1 "" nsv507826 16 75572220 75578220 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623216,nssv619174 M 4 2 0 "" NA10860,NA18994 nsv442403 16 75758984 75780371 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv817741 16 75760202 75768840 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417501 S 112 1 0 "" NA18965 nsv103008 16 75764240 75768306 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv121586 M 24 "" nsv523187 16 75784681 75787158 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698902 S 2026 0 1 "" nsv103185 16 75807158 75809976 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv121763 M 24 "" nsv524636 16 75816093 75854694 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700601 S 2026 0 1 "" nsv517260 16 75821218 75823175 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700407,nssv670095,nssv654151 M 2026 0 3 "" nsv526384 16 75821218 75826436 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702682 S 2026 0 1 "" nsv1886 16 75833306 75866072 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4231 S 9 1 0 "" NA12878 nsv457541 16 75911474 75946503 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534706 S 1557 0 1 "" 1782681091_A esv2751613 16 75930540 76002373 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6984747,essv6984746,essv6984745,essv6990015 M 771 0 1 "" SPC_173 nsv521833 16 76073764 76376942 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694606 S 2026 0 1 "" esv33018 16 76113788 76115434 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101601,essv95160,essv98221,essv95708 M 51 0 4 "" 21603,21721,21772,21841 nsv833291 16 76151117 76185463 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452878,nssv1452877 M 95 1 1 "" nsv102948 16 76210666 76216793 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv121526 M 24 "" nsv457542 16 76251592 76318899 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534707 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00677 nsv437808 16 76260141 76270643 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467689 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18521 nsv457543 16 76285736 76567948 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534708 S 1557 1 0 "" 1780862176_A nsv510422 16 76423682 76429682 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618419 S 4 0 1 "" CHM nsv833293 16 76524155 76726189 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452879,nssv1452880 M 95 2 0 "" nsv1887 16 76531376 76562452 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4232 S 9 1 0 "" NA12878 nsv518329 16 76535125 76535568 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695759 S 2026 0 1 "" nsv528395 16 76535568 76547275 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704985 S 2026 1 0 "" nsv103488 16 76536693 76537195 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv122066 M 24 "" nsv103420 16 76536693 76537689 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv121998 M 24 "" nsv817742 16 76619660 76629008 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418515,nssv1418516 M 112 2 0 "" NA19192,NA19194 nsv102979 16 76625804 76625999 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv121557 M 24 "" nsv520613 16 76646877 76649999 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv682926,nssv675869,nssv673237 M 2026 0 3 "" nsv520408 16 76709247 76728809 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv671227,nssv680768 M 2026 0 2 "" nsv817743 16 76771256 76773668 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417625 S 112 0 1 "" NA18987 nsv457544 16 76800885 76978383 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534709 S 1557 0 1 "" 1780862388_A dgv905e1 16 76811430 76974815 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv16844,esv584,essv11267 M 271 0 0 "" NA19204,NA19205 nsv518922 16 76837677 76988778 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696383 S 2026 0 1 "" dgv906e1 16 76848674 76948718 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv9959,essv15916 M 271 0 0 "" NA19204,NA19205 nsv526983 16 76849354 76853299 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703356 S 2026 0 1 "" nsv521493 16 76860767 77330083 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698104 S 2026 1 0 "" nsv507827 16 76915421 76921421 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623217,nssv619175 M 4 2 0 "" NA10860,NA18994 nsv150 16 76916517 76969258 CNV Loss Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv150 S 1 0 1 "" NA15510 nsv1889 16 76916517 76969258 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10962,nssv9536,nssv6684 M 9 0 3 "" NA12156,NA15510,NA18507 nsv9463 16 76928609 76942962 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27073,nssv21922,nssv24697,nssv26758,nssv26672,nssv28121,nssv24404,nssv21221,nssv25885,nssv23757,nssv23634,nssv22614,nssv25193,nssv26585,nssv25514,nssv23046,nssv23908,nssv20689,nssv23241,nssv23810,nssv26497,nssv23468,nssv24515 M 31 21 2 Samples from several populations that are part of the HapMap project. "" NA11830,NA12155,NA12872,NA18502,NA18504,NA18517,NA18537,NA18552,NA18563,NA18564,NA18572,NA18853,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19144,NA19173,NA19221,NA19240 esv32778 16 76929222 76941603 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101574,essv101268,essv93937,essv100912,essv95136,essv98179,essv94777,essv94080,essv101391,essv97826,essv95518,essv93066,essv95406,essv95811,essv92744,essv96628,essv97282,essv98571,essv100078,essv94870,essv92563,essv100530,essv99466,essv98480 M 51 13 11 "" 21603,21618,21634,21656,21721,21772,21791,21802,21805,21837,21847,21863,21872,21911,21944,22011,22075,22085,22086,22231,22233,22298,22335,22352 essv11375 16 76929719 76974815 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19127 nsv442730 16 76929941 76942266 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" esv32565 16 76950127 76950765 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100001 S 51 0 1 "" 22086 nsv457545 16 76966681 76988778 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534710 S 1557 0 1 "" 1798860102_A nsv510423 16 77022893 77028893 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618420 S 4 0 1 "" CHM nsv1890 16 77026930 77058754 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6685 S 9 1 0 "" NA12156 nsv103172 16 77119415 77119563 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv121750 M 24 "" nsv1891 16 77129014 77163630 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1325 S 9 1 0 "" NA19240 nsv510424 16 77220309 77226309 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618421,nssv621439,nssv624179 M 4 0 3 "" CHM,NA15510,NA18994 nsv457547 16 77225347 77330083 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534711 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00139 nsv457548 16 77245645 77418880 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534712 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00655 nsv442404 16 77319838 77327934 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv524805 16 77341734 77364835 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700797 S 2026 0 1 "" nsv515915 16 77367799 77370483 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv683778,nssv687663,nssv693677,nssv657636,nssv665288 M 2026 0 5 "" nsv457549 16 77468602 77539836 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534713 S 1557 1 0 "" 1780854295_A nsv520056 16 77473661 77474340 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv678532,nssv678729,nssv660332,nssv692606 M 2026 0 4 "" nsv527702 16 77503712 77504088 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704180 S 2026 0 1 "" nsv457550 16 77503712 77524436 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534714 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00553 dgv907e1 16 77607617 77626238 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1081,essv14043 M 271 0 0 "" NA18862 nsv516971 16 77614257 77626862 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv659420,nssv690735,nssv679423,nssv673603,nssv664251,nssv677192,nssv682347,nssv681780,nssv682879,nssv656883,nssv668544,nssv668045,nssv693900,nssv673395,nssv665412,nssv671292,nssv690040,nssv688835,nssv682674,nssv680081,nssv687173,nssv695249,nssv681607,nssv669747,nssv687612,nssv678617,nssv689067,nssv672731,nssv672309,nssv655586,nssv674558,nssv688764,nssv693691,nssv692936,nssv687723,nssv668847,nssv680143,nssv689502,nssv685558,nssv659072,nssv653536,nssv662356,nssv685369,nssv667521,nssv678069,nssv688446,nssv682801,nssv680467 M 2026 2 46 "" essv13302 16 77614399 77620657 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19202 dgv908e1 16 77616627 77620657 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv11307,essv7967,essv8558 M 271 0 0 "" NA18503,NA18863,NA19203 nsv442731 16 77617649 77620658 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" esv34199 16 77618863 77620000 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6980469,essv6987796 M 771 0 1 "" NA19200 essv8680 16 77618863 77621695 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18912 essv14812 16 77618863 77626238 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18870 nsv526802 16 77620360 77632812 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703156 S 2026 0 1 "" nsv1892 16 77626779 77672263 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5616,nssv6686 M 9 0 2 "" NA12156,NA19129 nsv518429 16 77632003 77632812 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695864 S 2026 1 0 "" nsv457553 16 77644298 77653349 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534716 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00765 nsv523542 16 77649268 77649949 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699320 S 2026 0 1 "" nsv518949 16 77758680 77760691 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696416 S 2026 0 1 "" nsv517220 16 77824930 77831740 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv654050,nssv683537,nssv667876,nssv687750,nssv692750,nssv653210,nssv677320,nssv668953,nssv671346,nssv679619,nssv662424,nssv687106,nssv659659,nssv654342,nssv696558,nssv664548,nssv666191,nssv666367,nssv659819,nssv655235,nssv670780,nssv688447 M 2026 2 20 "" nsv833294 16 77874786 78046026 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452881 S 95 1 0 "" nsv1893 16 77892204 77896128 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5617 S 9 1 0 "" NA19129 nsv528934 16 77899076 77919276 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705625 S 2026 0 1 "" nsv528461 16 78125291 78128823 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705063 S 2026 0 1 "" nsv833295 16 78126379 78284269 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452882 S 95 1 0 "" nsv833296 16 78249737 78447228 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452883 S 95 0 1 "" nsv518748 16 78273834 78286532 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696197 S 2026 0 1 "" nsv833297 16 78290002 78477920 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452884 S 95 1 0 "" nsv1894 16 78351287 78381989 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5618 S 9 1 0 "" NA19129 nsv1895 16 78404074 78432787 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1326 S 9 1 0 "" NA19240 esv34919 16 78447460 78480811 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6979786,essv6986943 M 771 1 0 "" NA18632 dgv354n27 16 78451238 78483635 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv457555,nsv457556 M 1557 2 0 "" HGDP01323,HGDP01326 dgv909e1 16 78452465 78480811 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1327,essv7656 M 271 0 0 "" NA18632 nsv519616 16 78590032 78593233 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv660588,nssv674875,nssv657072,nssv693008,nssv673162,nssv671371 M 2026 0 6 "" nsv520894 16 78600307 78607771 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv677089,nssv691905,nssv690676 M 2026 0 3 "" nsv833298 16 78679838 78872104 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452885,nssv1452886 M 95 2 0 "" nsv507828 16 78691098 78697098 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620609,nssv619176,nssv617916 M 4 3 0 "" CHM,NA10860,NA15510 nsv471718 16 78754338 78754541 CNV Loss Hinds et al 2006 16327809 Oligo_aCGH,PCR Custom Perlegen arrays nssv645999 M 1.553 95 "" nsv1896 16 78840831 78874441 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7281 S 9 1 0 "" NA12156 esv33683 16 78882804 78891515 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99552 S 51 0 1 "" 22335 nsv833299 16 78899246 79107184 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452887,nssv1452889,nssv1452888 M 95 1 2 "" nsv521087 16 78937231 78939425 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv681755,nssv691650 M 2026 0 2 "" nsv457557 16 78962793 79020900 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534719 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00187 nsv507829 16 78967350 78973350 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619177 S 4 1 0 "" NA10860 nsv509634 16 78989998 79061108 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623703 S 4 1 0 "" NA18994 nsv510692 16 78989998 79061108 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617426 S 4 0 1 "" CHM nsv527134 16 79013904 79014185 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703521 S 2026 0 1 "" esv2751614 16 79017052 79069150 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6989423,essv6989943 M 771 0 1 "" BEC_689 nsv833300 16 79032567 79158537 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452890 S 95 1 0 "" nsv457558 16 79047632 79060922 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534720 S 1557 0 1 "" NINDS_101 nsv457559 16 79055595 79065122 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534721 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00883 esv33408 16 79263630 79302872 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97581 S 51 0 1 "" 21616 nsv833301 16 79289671 79486252 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452891 S 95 0 1 "" nsv525885 16 79361491 79365113 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702086 S 2026 0 1 "" nsv523459 16 79361491 79369438 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699217 S 2026 0 1 "" nsv521339 16 79361491 79375929 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697947 S 2026 0 1 "" nsv457560 16 79382707 79415644 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534722 S 1557 0 1 "" 1780862415_A nsv442405 16 79460358 79471170 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv516964 16 79461910 79471170 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv675931,nssv686104,nssv685840,nssv660537,nssv664028,nssv653051,nssv653519,nssv654037,nssv690938 M 2026 0 9 "" nsv523962 16 79471447 79472730 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699812 S 2026 0 1 "" dgv355n27 16 79512894 79547360 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv457561,nsv457562 M 1557 0 2 "" HGDP00994,HGDP01408 nsv520122 16 79512894 79559416 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv682802,nssv660974,nssv676419,nssv672073,nssv683209,nssv682675 M 2026 0 6 "" dgv910e1 16 79529780 79539177 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv23718,essv7480 M 271 0 0 "" NA12813,NA18561 dgv911e1 16 79529780 79544102 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv187,essv18868,essv21483 M 271 0 0 "" NA07029,NA10830,NA18994 dgv912e1 16 79529780 79564259 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv19723,essv14656,essv7673,essv5004,essv10187 M 271 0 0 "" NA12236,NA18516,NA18571,NA18620,NA19145 dgv913e1 16 79529780 79584643 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv19344,esv914 M 271 0 0 "" NA06985 nsv510425 16 79532198 79538198 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622265 S 4 0 1 "" NA10860 nsv9464 16 79532411 79540970 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23935,nssv27083,nssv22622 M 31 0 3 Samples from several populations that are part of the HapMap project. "" NA07029,NA18537,NA18860 dgv49n17 16 79533041 79541968 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437809,nsv437810 M 60 0 2 "" NA18857,NA19094 dgv914e1 16 79536934 79539177 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2146,essv957,essv22610,essv18805,essv6060,essv7241,essv25041,essv1073,essv21952,essv5688,essv6542 M 271 0 0 "" NA07000,NA12154,NA12248,NA12801,NA18603,NA18605,NA18624,NA18635,NA18978,NA18981,NA18990 dgv915e1 16 79536934 79544102 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2557,essv20517,essv4929,essv8404,essv17401,essv3917,essv15938,essv17687,essv22006,essv1004 M 271 0 0 "" NA10835,NA12716,NA12815,NA18515,NA18537,NA18855,NA18960,NA18964,NA18974,NA19093 essv3264 16 79537741 79539177 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18967 nsv510426 16 79544694 79550694 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622266 S 4 0 1 "" NA10860 nsv817744 16 79547360 79585186 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418181 S 112 0 1 "" NA06985 nsv522168 16 79611798 79619328 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694941 S 2026 1 0 "" nsv1897 16 79618067 79662761 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7282 S 9 0 1 "" NA12156 esv2422360 16 79623534 79738228 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161256 S 181 1 0 "" ND03628 dgv356n27 16 79637867 79652592 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv457564,nsv457565,nsv457569,nsv457568,nsv457566,nsv457567 M 1557 0 6 "" HGDP00543,HGDP00790,HGDP00820,HGDP01232,HGDP01317,HGDP01386 esv2751615 16 79650600 79865100 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6987561,essv6987562,essv6984333,essv6984334 M 771 1 0 "" BEC_691 nsv520035 16 79703176 79715022 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv660178,nssv692424 M 2026 0 2 "" nsv521055 16 79738924 79822098 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705384,nssv699815,nssv680882,nssv689308 M 2026 0 4 "" nsv457571 16 79747011 79791115 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534732 S 1557 1 0 "" NINDS_13 nsv457573 16 79761582 79852394 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534733 S 1557 1 0 "" NINDS_180 nsv527288 16 79761689 79868448 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703702 S 2026 1 0 "" nsv457575 16 79787842 79802003 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534734 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00837 nsv103709 16 79841705 79845417 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv122287 M 24 "" nsv522890 16 79898864 79905897 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698548 S 2026 0 1 "" nsv524477 16 79916968 79919635 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700415 S 2026 1 0 "" nsv524464 16 79916968 79923475 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700398 S 2026 1 0 "" nsv524244 16 79983247 79983359 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700136 S 2026 0 1 "" nsv518910 16 80066794 80068243 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694049 S 2026 0 1 "" nsv522140 16 80066794 80068243 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694135 S 2026 1 0 "" nsv521875 16 80068243 80072251 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694646 S 2026 0 1 "" nsv457576 16 80083138 80136934 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534735 S 1557 0 1 "" 1780862304_A nsv526331 16 80125055 80125193 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702621 S 2026 0 1 "" nsv520382 16 80125055 80129226 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697383 S 2026 0 1 "" nsv1898 16 80139138 80184006 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7283 S 9 0 1 "" NA12156 nsv524589 16 80150435 80166799 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700548 S 2026 0 1 "" nsv510427 16 80171172 80177172 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622267 S 4 0 1 "" NA10860 nsv523172 16 80315964 80335992 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698884 S 2026 0 1 "" nsv457577 16 80330710 80365734 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534736 S 1557 0 1 "" NINDS_74 nsv1900 16 80343141 80374805 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6687 S 9 1 0 "" NA12156 nsv442406 16 80395345 80398185 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv523908 16 80397623 80402192 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699751 S 2026 0 1 "" nsv519465 16 80556907 80559605 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv656280,nssv672507,nssv658819 M 2026 0 3 "" nsv525467 16 80712120 80780986 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701595 S 2026 0 1 "" nsv518129 16 80745674 80785577 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695547 S 2026 0 1 "" nsv833302 16 80745852 80921364 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452892 S 95 0 1 "" nsv817745 16 80770740 80774123 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416183 S 112 1 0 "" NA19141 nsv522270 16 80809504 80883031 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695050 S 2026 0 1 "" nsv833304 16 80864376 80986522 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452893 S 95 0 1 "" nsv525789 16 80906745 80960304 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701969 S 2026 0 1 "" nsv522194 16 80956298 80957259 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694969 S 2026 0 1 "" nsv523980 16 80956298 80958556 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699835 S 2026 1 0 "" nsv521799 16 80957259 80958556 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694569 S 2026 0 1 "" nsv527041 16 80958556 80960283 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703417 S 2026 0 1 "" nsv519233 16 80973842 80978516 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694318 S 2026 0 1 "" nsv1901 16 80974017 81018675 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2153 S 9 0 1 "" NA18555 nsv1902 16 81006303 81049425 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7284,nssv2956 M 9 2 0 "" NA12156,NA18555 nsv526358 16 81027428 81028777 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702651 S 2026 1 0 "" nsv833305 16 81121389 81279585 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452894 S 95 1 0 "" nsv528194 16 81173242 81184235 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704751 S 2026 1 0 "" nsv517665 16 81261056 81261192 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv677237,nssv666049,nssv667747,nssv676177,nssv663395,nssv671933,nssv686180,nssv675668,nssv664979,nssv681160,nssv688046,nssv688765,nssv690445,nssv663240,nssv688881,nssv652766,nssv666076,nssv660381 M 2026 0 18 "" esv2751616 16 81272197 81409797 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6981239,essv6981237,essv6981238 M 771 1 0 "" BEC_371 nsv527828 16 81278925 81281593 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704324 S 2026 0 1 "" nsv526366 16 81278925 81283985 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702660 S 2026 0 1 "" nsv521310 16 81330369 81333890 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697917 S 2026 0 1 "" nsv522570 16 81546478 81602166 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705954 S 2026 0 1 "" nsv1903 16 81592953 81637815 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7285 S 9 0 1 "" NA12156 nsv1904 16 81630362 81647884 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4233 S 9 1 0 "" NA12878 nsv833306 16 81671400 81856276 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452895 S 95 0 1 "" nsv527342 16 81674862 81692190 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703768 S 2026 0 1 "" nsv457583 16 81691958 81713224 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534737 S 1557 0 1 "" 1780854198_A nsv518143 16 81694840 81696825 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694205 S 2026 0 1 "" nsv522936 16 81697744 81698178 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698599 S 2026 0 1 "" nsv515825 16 81753265 81759394 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv689454,nssv680615,nssv674120,nssv682019,nssv684616,nssv683319,nssv672862,nssv671890,nssv688293,nssv665331,nssv665647,nssv663421,nssv664894,nssv685639 M 2026 0 14 "" nsv833307 16 81889263 81952169 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452916,nssv1452910,nssv1452908,nssv1452917,nssv1452911,nssv1452915,nssv1452912,nssv1452896,nssv1452909,nssv1452902,nssv1452900,nssv1452907,nssv1452918,nssv1452906,nssv1452898,nssv1452897,nssv1452899,nssv1452913,nssv1452901,nssv1452905,nssv1452903,nssv1452904,nssv1452914 M 95 2 21 "" nsv1905 16 81926795 81960024 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7286 S 9 1 0 "" NA12156 nsv510428 16 81951443 81957443 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624180 S 4 0 1 "" NA18994 nsv518084 16 82116303 82122361 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695498 S 2026 0 1 "" dgv168n21 16 82196700 82201291 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv521708,nsv521265 M 2026 0 2 "" nsv524580 16 82199007 82199077 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700536 S 2026 0 1 "" nsv523157 16 82209186 82213765 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698866 S 2026 0 1 "" nsv515680 16 82213765 82218967 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv687428,nssv685979,nssv684502,nssv664366,nssv675669,nssv683378 M 2026 0 6 "" esv33495 16 82214966 82248859 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93815 S 51 0 1 "" 21634 nsv457586 16 82216511 82222143 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534739 S 1557 0 1 "" NINDS_166 nsv1906 16 82221595 82253574 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9964,nssv1329 M 9 0 2 "" NA18507,NA19240 esv32756 16 82295946 82296179 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98151,essv97392 M 51 0 2 "" 21772,21879 nsv833308 16 82333307 82488856 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452919 S 95 0 1 "" dgv916e1 16 82340616 82351735 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv901,essv19881 M 271 0 0 "" NA11881 nsv103273 16 82355853 82355922 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv121851 M 24 "" nsv471731 16 82365508 82366721 CNV Loss Hinds et al 2006 16327809 Oligo_aCGH,PCR Custom Perlegen arrays nssv646012 M 0.084 95 "" nsv1907 16 82391898 82426612 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2957 S 9 1 0 "" NA18555 nsv527290 16 82406324 82408574 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703705 S 2026 0 1 "" nsv457587 16 82408574 82499322 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534740 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00748 nsv522135 16 82423409 82430365 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694909 S 2026 0 1 "" nsv524223 16 82434492 82449797 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700111 S 2026 0 1 "" nsv529009 16 82434492 82453254 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705719 S 2026 1 0 "" nsv525250 16 82441489 82453254 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701345 S 2026 1 0 "" nsv528477 16 82445197 82450014 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705080 S 2026 1 0 "" nsv521714 16 82445197 82453254 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698341 S 2026 0 1 "" nsv522122 16 82445197 82484740 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694895 S 2026 0 1 "" nsv442407 16 82447180 82449266 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv520396 16 82448386 82453254 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv672920,nssv673202,nssv683779,nssv663671 M 2026 0 4 "" nsv1908 16 82467827 82500439 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4234 S 9 1 0 "" NA12878 nsv520970 16 82468007 82484740 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697714 S 2026 0 1 "" nsv517566 16 82512886 82604216 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv652382,nssv701561,nssv702543,nssv700267,nssv668726,nssv697590 M 2026 1 5 "" nsv528396 16 82528743 82641628 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704986 S 2026 0 1 "" nsv457591 16 82581425 82593420 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534741 S 1557 0 1 "" 1798860361_A dgv357n27 16 82585624 82596250 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv457592,nsv457593 M 1557 0 2 "" 1780854206_A,HGDP00784 nsv457594 16 82588936 82599159 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534744 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01009 nsv457595 16 82604216 82682771 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534745 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00445 nsv527489 16 82621883 82641628 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703937 S 2026 0 1 "" nsv1909 16 82622574 82667809 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7287 S 9 0 1 "" NA12156 nsv833309 16 82667973 82839698 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452920 S 95 0 1 "" nsv518331 16 82767239 82770211 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694226 S 2026 0 1 "" nsv523437 16 82767239 82787877 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699193 S 2026 0 1 "" nsv457597 16 82773193 82806258 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534747 S 1557 0 1 "" NINDS_6 nsv518342 16 82785700 82787736 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694227 S 2026 0 1 "" nsv833310 16 82797547 82963492 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452921 S 95 0 1 "" nsv522245 16 82871699 82871951 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695025 S 2026 0 1 "" nsv523416 16 82901770 82907503 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699168 S 2026 0 1 "" dgv169n21 16 82937412 83071842 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv521995,nsv521819 M 2026 0 2 "" nsv457598 16 82958351 83026812 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534748 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00033 nsv457599 16 82969529 83046431 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534749 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00572 nsv457600 16 82978761 83092297 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534750 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00805 nsv527957 16 82980316 82985793 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704467 S 2026 0 1 "" nsv524545 16 82980316 82988377 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700496 S 2026 0 1 "" nsv517727 16 82988282 82988377 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv687444,nssv653023,nssv691377,nssv673785,nssv658188 M 2026 0 5 "" nsv523226 16 82988377 83046534 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698949 S 2026 0 1 "" nsv524729 16 83005506 83006122 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700718 S 2026 0 1 "" nsv817746 16 83010853 83011254 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418029 S 112 1 0 "" NA07357 nsv457603 16 83044557 83055189 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534751 S 1557 0 1 "" 1798860279_A esv33856 16 83053982 83054282 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99827 S 51 1 0 "" 22086 esv33040 16 83056817 83061318 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98766,essv97569,essv101251,essv93873,essv96806,essv95226,essv94729,essv93984,essv94389,essv95755,essv95410,essv97287,essv101645,essv98940,essv92971,essv92677,essv96627,essv97278,essv100069,essv93371,essv99688,essv92546,essv98023,essv96436,essv97727,essv100591 M 51 0 26 "" 21606,21616,21618,21634,21659,21721,21791,21802,21808,21841,21872,21879,21909,21938,21939,21944,22011,22075,22086,22170,22217,22233,22259,22261,22278,22298 nsv833311 16 83080299 83254964 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452922 S 95 0 1 "" nsv457604 16 83107471 83144977 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534752 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01266 nsv528275 16 83138357 83140466 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704844 S 2026 1 0 "" nsv515513 16 83138484 83139269 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv678297,nssv653406,nssv655525 M 2026 0 3 "" nsv457605 16 83170906 83231036 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534753 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01273 nsv151 16 83201418 83232168 CNV Loss Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv151 S 1 0 1 "" NA15510 nsv1911 16 83201418 83232168 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10963 S 9 0 1 "" NA15510 esv33456 16 83213092 83229821 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101518,essv98689,essv101165,essv93902,essv96790,essv101013,essv95179,essv98204,essv94745,essv94040,essv101377,essv94449,essv96879,essv97840,essv95639,essv95420,essv93162,essv95238,essv97444,essv101737,essv95856,essv94558,essv99059,essv92850,essv92715,essv96162,essv96702,essv97089,essv96068,essv93435,essv93207,essv99687,essv94862,essv92552,essv98066,essv96559,essv99251,essv97726,essv100153,essv100481,essv100315,essv98491,essv96330 M 51 43 0 "" 21603,21606,21618,21634,21659,21693,21721,21772,21791,21802,21805,21808,21817,21837,21841,21847,21863,21872,21879,21909,21911,21932,21938,21939,21944,22007,22011,22075,22127,22128,22170,22217,22231,22233,22259,22261,22275,22278,22286,22298,22300,22352,22371 nsv510429 16 83340676 83346676 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618422 S 4 0 1 "" CHM nsv457606 16 83383437 83486232 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534754 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00766 nsv457608 16 83436787 83463043 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534755 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00562 nsv457610 16 83482495 83500720 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534756 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01217 nsv520920 16 83646696 83654057 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697688 S 2026 0 1 "" nsv1912 16 83646769 83659796 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1330 S 9 1 0 "" NA19240 nsv103637 16 83707046 83707633 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv122215 M 24 "" esv1914952 16 83746238 83747302 OTHER Inversion Feuk_et_al_2005 16254605 FISH,PCR Not Provided essv4491059 S 18 0 0 "" nsv833312 16 83749375 83918933 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452924,nssv1452923 M 95 0 2 "" nsv457611 16 83805825 83861626 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534757 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00685 nsv517320 16 83855188 83867391 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv665387,nssv666235,nssv684884,nssv678122,nssv651704,nssv653079,nssv692093,nssv703281,nssv686677,nssv678967,nssv662295,nssv658047,nssv682625,nssv688836,nssv677404,nssv669724,nssv677374,nssv691582,nssv680110,nssv652393,nssv687546,nssv687691,nssv662986,nssv675844,nssv690629,nssv668490,nssv670956,nssv690602,nssv653407,nssv691693,nssv670553,nssv670311,nssv659244,nssv659143 M 2026 0 34 "" nsv833313 16 83873509 84049424 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452925 S 95 0 1 "" nsv457612 16 83934389 83987411 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534758 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00776 nsv152 16 83973688 84006192 CNV Loss Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv152 S 1 0 1 "" NA15510 nsv1913 16 83973688 84012303 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10964,nssv5619,nssv1331,nssv6688,nssv2154 M 9 0 5 "" NA12156,NA15510,NA18555,NA19129,NA19240 nsv9465 16 83994558 84005459 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22644,nssv26769,nssv24723,nssv25537,nssv23269,nssv20585,nssv23104,nssv27093,nssv23173,nssv25906,nssv23784,nssv21952,nssv22596,nssv24015,nssv23962,nssv23496,nssv25218,nssv22652,nssv24430 M 31 8 11 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10847,NA10863,NA12155,NA12740,NA18502,NA18504,NA18537,NA18563,NA18564,NA18853,NA18860,NA18942,NA18975,NA19007,NA19144,NA19173,NA19240 nsv103699 16 84002185 84003833 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv122277 M 24 "" nsv515746 16 84182628 84242621 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv684299,nssv664653 M 2026 0 2 "" nsv526299 16 84242621 84259087 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702580 S 2026 0 1 "" nsv833316 16 84288439 84491140 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452926,nssv1452927 M 95 0 2 "" nsv527240 16 84300565 84352773 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703642 S 2026 0 1 "" nsv510693 16 84309198 84363046 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620092 S 4 0 1 "" NA15510 nsv1914 16 84457587 84492774 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4237 S 9 1 0 "" NA12878 nsv517900 16 84481566 84483902 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695309 S 2026 1 0 "" nsv9466 16 84508957 84511013 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28123 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19221 nsv526306 16 84539747 84542101 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702589 S 2026 0 1 "" nsv509636 16 84547935 84570807 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623704 S 4 1 0 "" NA18994 nsv526694 16 84553085 84555097 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703031 S 2026 0 1 "" nsv471792 16 84554301 84555094 CNV Loss Hinds et al 2006 16327809 Oligo_aCGH,PCR Custom Perlegen arrays nssv646073 M 0.299 95 "" nsv9467 16 84561136 84567780 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22626,nssv24541,nssv26685,nssv23662,nssv23201,nssv23297,nssv20615,nssv26511,nssv27103,nssv20719,nssv24456,nssv28125,nssv26599,nssv21251,nssv23811,nssv23132,nssv24042,nssv21982,nssv20680,nssv23524,nssv22674,nssv25560 M 31 21 1 Samples from several populations that are part of the HapMap project. "" NA07048,NA10847,NA10863,NA11830,NA12740,NA12802,NA12872,NA18517,NA18552,NA18563,NA18564,NA18572,NA18853,NA18860,NA18942,NA18972,NA18975,NA19007,NA19132,NA19173,NA19221,NA19240 nsv1915 16 84608043 84640642 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6689 S 9 1 0 "" NA12156 nsv457613 16 84611335 84632417 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534759 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00785 nsv522448 16 84648399 84648572 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705807 S 2026 1 0 "" nsv524914 16 84648399 84649131 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700926 S 2026 0 1 "" nsv520443 16 84680025 84680729 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697423 S 2026 0 1 "" nsv516213 16 84713465 84714361 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv666852,nssv656353 M 2026 0 2 "" nsv833317 16 84743365 84933059 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452928 S 95 1 0 "" nsv524026 16 84832585 84834942 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699889 S 2026 0 1 "" dgv917e1 16 84834231 84849716 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1424,essv12137 M 271 0 0 "" NA19173 nsv517218 16 84978318 84978371 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv684827,nssv671934,nssv661604,nssv692259,nssv662467,nssv691979,nssv654670,nssv676357,nssv664162,nssv658495,nssv682172,nssv671050,nssv656354,nssv698852,nssv683645,nssv688656,nssv684353,nssv665388,nssv678431,nssv690127,nssv665120,nssv683857,nssv670714,nssv682750,nssv686678,nssv663000,nssv653333,nssv692800,nssv692964,nssv665777,nssv653720,nssv680703,nssv674087,nssv657810,nssv688550,nssv678473,nssv691225,nssv673896,nssv676854,nssv656884,nssv678751,nssv657688,nssv690307,nssv682289,nssv687402,nssv684163,nssv662949,nssv661144,nssv656837,nssv665837,nssv679401,nssv660829,nssv686620,nssv669150,nssv678596,nssv679221,nssv654994,nssv654692,nssv664429,nssv674197,nssv655932,nssv663725,nssv666999,nssv661513,nssv665266,nssv693830,nssv663644,nssv680963,nssv686836,nssv658379,nssv659421,nssv671121,nssv674772,nssv690285,nssv689666,nssv655147,nssv677470,nssv693632,nssv666252,nssv675087,nssv678070,nssv669931,nssv669239,nssv652863,nssv676685,nssv663672,nssv683187,nssv674677,nssv679467,nssv674973,nssv673396,nssv659356 M 2026 91 1 "" nsv518275 16 85004685 85004856 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695707 S 2026 0 1 "" nsv525024 16 85070722 85184943 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701063 S 2026 0 1 "" essv7962 16 85079026 85084370 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19203 dgv918e1 16 85079026 85094533 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv4511,esv1082 M 271 0 0 "" NA18623 nsv9468 16 85085656 85102849 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24019,nssv23229,nssv24069,nssv26697,nssv22682,nssv28127 M 31 6 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA12740,NA18517,NA18537,NA19221 nsv527579 16 85086281 85109283 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704040 S 2026 0 1 "" nsv510430 16 85089907 85095907 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624181,nssv621440 M 4 0 2 "" NA15510,NA18994 nsv516630 16 85365176 85385659 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv653253,nssv669403 M 2026 0 2 "" nsv103659 16 85371727 85371727 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv122237 M 24 "" nsv1916 16 85388538 85433860 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7288 S 9 0 1 "" NA12156 dgv919e1 16 85399263 85564336 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv18638,esv851 M 271 0 0 "" NA12234 nsv833318 16 85399265 85564330 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452929 S 95 0 1 "" nsv520672 16 85475004 85477682 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv675335,nssv678568,nssv676052,nssv673786,nssv686578 M 2026 0 5 "" nsv9470 16 85519638 85523198 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23257 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA07048 essv5760 16 85539033 85549747 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18540 essv23731 16 85539033 85558564 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12813 nsv509637 16 85570318 85603896 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623706 S 4 1 0 "" NA18994 nsv833319 16 85576497 85754878 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452930 S 95 0 1 "" nsv457614 16 85602131 85623320 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534760 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00725 nsv518841 16 85611230 85616837 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696294 S 2026 0 1 "" nsv527723 16 85622534 85623320 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704204 S 2026 0 1 "" nsv526657 16 85623320 85627484 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702985 S 2026 0 1 "" nsv103361 16 85640599 85640599 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv121939 M 24 "" nsv103390 16 85809499 85809590 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv121968 M 24 "" nsv1917 16 85821074 85840649 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7289 S 9 1 0 "" NA12156 nsv510694 16 85867456 85991191 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620093 S 4 0 1 "" NA15510 nsv833320 16 85906951 86092333 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452931,nssv1452933,nssv1452932 M 95 3 0 "" esv33545 16 86015504 86016210 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98884 S 51 1 0 "" 21606 nsv833321 16 86026865 86190517 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452940,nssv1452936,nssv1452937,nssv1452935,nssv1452942,nssv1452941,nssv1452934,nssv1452939,nssv1452938 M 95 1 8 "" nsv525605 16 86041339 86045686 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701749 S 2026 1 0 "" nsv1918 16 86098534 86143546 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7291 S 9 0 1 "" NA12156 nsv524450 16 86138330 86142249 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700383 S 2026 0 1 "" nsv457615 16 86141814 86180981 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534761 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00607 nsv510695 16 86167135 86223037 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620094 S 4 0 1 "" NA15510 nsv527983 16 86260171 86267434 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704502 S 2026 0 1 "" nsv103793 16 86262682 86262733 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv122371 M 24 "" nsv103166 16 86262719 86262770 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv121744 M 24 "" nsv457616 16 86296359 86505516 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534762 S 1557 1 0 "" 1798860491_A nsv833322 16 86306136 86475977 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452943 S 95 0 1 "" dgv36n68 16 86392843 86574657 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH nsv833324,nsv833323 M 95 0 7 "" nsv9471 16 86472244 86532249 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26738,nssv28129 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA18517,NA19221 dgv920e1 16 86476851 86671233 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv4124,esv317 M 271 0 0 "" NA18555 nsv103170 16 86539301 86539354 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv121748 M 24 "" nsv1919 16 86554881 86570715 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6690 S 9 0 1 "" NA12156 nsv9472 16 86577511 86585221 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26780 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18502 nsv1920 16 86581816 86628689 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5620 S 9 0 1 "" NA19129 nsv9473 16 86589032 86592669 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22012,nssv24096 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA12740,NA18942 nsv103533 16 86589867 86590016 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv122111 M 24 "" nsv510431 16 86613003 86619003 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622268,nssv624182 M 4 0 2 "" NA10860,NA18994 nsv9474 16 86669288 86674103 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20779,nssv25243,nssv23738,nssv23838,nssv24749,nssv22042,nssv20645,nssv26525,nssv23325,nssv22656,nssv24123,nssv22711,nssv24046 M 31 0 13 Samples from several populations that are part of the HapMap project. "" NA07029,NA10839,NA10847,NA10863,NA12155,NA12740,NA18537,NA18563,NA18572,NA18942,NA18972,NA19007,NA19144 dgv47n6 16 86670233 86673168 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv103705,nsv103282 M 24 "" nsv442733 16 86671164 86672892 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv1922 16 86691220 86775252 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7293,nssv7292 M 9 0 1 "" NA12156 dgv170n21 16 86712145 86722711 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv521617,nsv520234 M 2026 0 2 "" nsv103626 16 86713224 86713428 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv122204 M 24 "" nsv103452 16 86732640 86732704 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv122030 M 24 "" nsv103723 16 86776202 86776283 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv122301 M 24 "" nsv528456 16 86912753 87079871 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705058 S 2026 0 1 "" dgv171n21 16 86976186 87097884 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv521704,nsv528251 M 2026 0 2 "" nsv528168 16 86981260 86985334 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704717 S 2026 0 1 "" dgv921e1 16 86986673 87137417 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv3787,essv261,esv56 M 271 0 0 "" NA18943,NA18948 nsv9475 16 86991678 86996237 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26612 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19132 nsv1923 16 86998919 87002647 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7294 S 9 1 0 "" NA12156 nsv817747 16 87054324 87082060 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416010 S 112 0 1 "" NA12750 nsv103216 16 87055016 87055016 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv121794 M 24 "" nsv1924 16 87091936 87109063 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1332 S 9 1 0 "" NA19240 nsv1925 16 87092258 87137402 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7295 S 9 0 1 "" NA12156 esv33406 16 87110561 87135152 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98505 S 51 1 0 "" 22352 nsv526557 16 87110740 87161479 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702872 S 2026 0 1 "" nsv833325 16 87147647 87292103 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452951,nssv1452953,nssv1452954,nssv1452952 M 95 0 4 "" nsv523859 16 87195552 87229281 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699694 S 2026 1 0 "" nsv1926 16 87220199 87254453 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2958 S 9 1 0 "" NA18555 nsv833327 16 87261340 87351530 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452962,nssv1452956,nssv1452958,nssv1452967,nssv1452957,nssv1452965,nssv1452961,nssv1452963,nssv1452964,nssv1452968,nssv1452959,nssv1452971,nssv1452970,nssv1452969,nssv1452966,nssv1452960,nssv1452955 M 95 0 17 "" nsv1927 16 87306494 87337492 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7296,nssv5621 M 9 2 0 "" NA12156,NA19129 nsv517643 16 87307676 87350248 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv692965,nssv687496,nssv691871,nssv665584,nssv669113,nssv675166,nssv664140,nssv677150,nssv672984,nssv663521,nssv660783,nssv668671,nssv683672,nssv669932,nssv691475,nssv677918,nssv652657,nssv688908,nssv681715,nssv690237,nssv673024,nssv689646 M 2026 0 22 "" dgv37n68 16 87361369 87538812 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH nsv833328,nsv833329 M 95 0 16 "" nsv457617 16 87395753 87423638 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534763 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00078 nsv528898 16 87399730 87420917 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705582 S 2026 0 1 "" nsv521217 16 87399730 87768284 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697850 S 2026 0 1 "" nsv527997 16 87420917 87432301 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704522 S 2026 0 1 "" nsv1928 16 87459120 87491186 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5622 S 9 1 0 "" NA19129 nsv103408 16 87503515 87503515 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv121986 M 24 "" nsv103763 16 87523463 87523534 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv122341 M 24 "" nsv457619 16 87650240 87733984 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534765 S 1557 0 1 "" NINDS_51 nsv457620 16 87685048 87768284 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534766 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01346 nsv519104 16 87694595 87791352 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696580 S 2026 0 1 "" nsv457621 16 87694595 87811310 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534767 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00696 nsv103175 16 87711805 87711805 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv121753 M 24 "" nsv524478 16 87733011 87762449 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700416 S 2026 0 1 "" nsv509638 16 87746590 87890112 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619697 S 4 1 0 "" NA10860 nsv469681 16 87800694 87958839 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649612 M 265 0 0 Samples from several populations that are part of the HapMap project. "" nsv457622 16 87801384 87913062 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534768 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00885 nsv103332 16 87884133 87884202 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv121910 M 24 "" dgv922e1 16 87970408 88179649 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv22857,essv16416,essv11868,essv10441,essv18194,essv22680,essv23475,essv5914,essv8778,essv14640,essv15269,essv12548,essv10042,essv12377,essv12279,essv17156,essv12817,essv21799,essv8242,essv7841,essv21287,essv16654,essv19776,essv19660,essv16051,essv4898,essv9918,essv18600,essv7143,essv10894,essv21229,essv19424,esv154,essv13856,essv17332,essv11168,essv23258,essv9138,essv14049,essv24832,essv15863,essv15301,essv6872,essv18763,essv17891,essv8104,essv13545,essv2023,essv4141,essv18435,essv16229,essv3523,essv17269,essv16963,essv4788,essv24718,essv15481,essv10583,essv14786 M 271 0 0 "" NA07000,NA07029,NA07034,NA10835,NA10855,NA11829,NA11830,NA11831,NA11840,NA12003,NA12057,NA12234,NA12239,NA12264,NA12752,NA12760,NA12874,NA18501,NA18503,NA18505,NA18515,NA18547,NA18550,NA18555,NA18558,NA18561,NA18605,NA18620,NA18854,NA18856,NA18860,NA18861,NA18862,NA18949,NA18965,NA19092,NA19093,NA19094,NA19098,NA19099,NA19101,NA19116,NA19120,NA19139,NA19142,NA19144,NA19145,NA19159,NA19160,NA19161,NA19171,NA19206,NA19209,NA19211,NA19221,NA19223,NA19238,NA19240 nsv9476 16 87996062 87999600 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26539 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18972 nsv103540 16 88023000 88023167 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv122118 M 24 "" esv33933 16 88091927 88094569 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv96789,essv94789 M 51 0 2 "" 21659,21791 nsv509639 16 88107447 88369824 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619698 S 4 1 0 "" NA10860 nsv9477 16 88163792 88202556 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26791,nssv22072,nssv26625,nssv25268,nssv24149,nssv23837,nssv23285,nssv26749,nssv22770,nssv28131,nssv22685,nssv24175,nssv25927 M 31 11 1 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10863,NA12155,NA12740,NA18502,NA18504,NA18517,NA18942,NA18980,NA19132,NA19221 nsv103622 16 88173623 88174049 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv122200 M 24 "" esv33444 16 88181462 88187850 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98916 S 51 1 0 "" 21606 nsv1929 16 88195590 88222426 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5624 S 9 1 0 "" NA19129 nsv103438 16 88207742 88207796 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv122016 M 24 "" nsv1930 16 88227785 88234659 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4238 S 9 1 0 "" NA12878 nsv102951 16 88242736 88242869 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv121529 M 24 "" nsv457623 16 88258328 88447526 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534769 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00629 nsv833330 16 88272375 88335692 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1452991,nssv1452988,nssv1452999,nssv1452990,nssv1452989,nssv1452994,nssv1452998,nssv1452993,nssv1452992,nssv1452995,nssv1452997,nssv1452996,nssv1453003,nssv1453002,nssv1453000,nssv1453001 M 95 0 16 "" nsv516241 16 88289911 88317399 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv683166,nssv691476,nssv674088,nssv667000,nssv681078,nssv657073,nssv676855,nssv655933,nssv691980,nssv683279 M 2026 0 10 "" nsv1931 16 88307558 88340610 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7297 S 9 1 0 "" NA12156 nsv833331 16 88320000 88443715 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453031,nssv1453037,nssv1453019,nssv1453030,nssv1453036,nssv1453033,nssv1453022,nssv1453038,nssv1453041,nssv1453032,nssv1453020,nssv1453039,nssv1453021,nssv1453029,nssv1453028,nssv1453018,nssv1453035,nssv1453023,nssv1453042,nssv1453040,nssv1453034,nssv1453004,nssv1453005,nssv1453009,nssv1453006,nssv1453027,nssv1453016,nssv1453007,nssv1453017,nssv1453008,nssv1453013,nssv1453015,nssv1453024,nssv1453011,nssv1453012,nssv1453010,nssv1453026,nssv1453025,nssv1453014 M 95 38 1 "" nsv457624 16 88332356 88509859 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534770 S 1557 0 1 "" NINDS_233 nsv457625 16 88376981 88403211 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534771 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01072 dgv923e1 16 88398233 88495450 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv22051,essv20391,esv221,essv23874 M 271 0 0 "" NA10830,NA12154,NA12814 nsv9478 16 88423258 88429390 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22714,nssv20675 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA10847,NA10863 esv32652 16 88424470 88425844 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98323,essv95638,essv97318,essv101628,essv94488,essv92856 M 51 0 6 "" 21772,21841,21879,21909,21932,21939 nsv9479 16 88472495 88474155 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25293 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA12155 nsv509640 16 88493658 88563706 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619699 S 4 1 0 "" NA10860 nsv9481 16 88494483 88496748 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23313 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA07048 nsv526347 16 88499846 88506995 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702639 S 2026 0 1 "" nsv519064 16 88506995 88513655 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696536 S 2026 0 1 "" nsv525671 16 88509859 88526295 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701828 S 2026 0 1 "" nsv457626 16 88551703 88677423 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534772 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00460 nsv103116 16 88576334 88576416 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv121694 M 24 "" nsv103059 16 88576500 88576500 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv121637 M 24 "" nsv509641 16 88628603 88714482 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619700 S 4 1 0 "" NA10860 nsv1933 16 88637496 88648505 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6691 S 9 1 0 "" NA12156 nsv1934 16 88645830 88682594 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9966 S 9 0 1 "" NA18507 nsv9482 16 88657900 88667242 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24774,nssv24482 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA19144,NA19173 nsv9483 16 88689870 88719608 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26760,nssv23353,nssv23865,nssv26802,nssv20809,nssv24508,nssv22773,nssv26638,nssv23160,nssv22703,nssv25318,nssv20705,nssv23864 M 31 4 9 Samples from several populations that are part of the HapMap project. "" NA10847,NA10863,NA12155,NA18502,NA18517,NA18563,NA18572,NA18853,NA18975,NA18980,NA19007,NA19132,NA19173 nsv9484 16 88794450 88819185 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23411,nssv24799 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA18563,NA19144 nsv469538 17 1 116762 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649647 M 265 0 0 Samples from several populations that are part of the HapMap project. "" nsv509642 17 40803 244255 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619701,nssv619703,nssv619702 M 4 1 0 "" NA10860 nsv524204 17 51088 58980 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700090 S 2026 0 1 "" nsv457627 17 51088 583572 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534773 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00796 nsv1935 17 57296 62178 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10105,nssv6693 M 9 2 0 "" NA12156,NA18956 esv2422420 17 60543 963131 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161354 S 181 1 0 "" ND01666 nsv1936 17 66272 74649 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2155,nssv4239 M 9 2 0 "" NA12878,NA18555 nsv112249 17 67060 67225 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130827 M 24 "" nsv112500 17 69927 70151 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv131078 M 24 "" nsv1937 17 86533 124600 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1333,nssv5625 M 9 2 0 "" NA19129,NA19240 nsv519390 17 86802 88988 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv680586,nssv687086,nssv655811,nssv698464,nssv693852 M 2026 1 4 "" nsv457628 17 135310 218145 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534774 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00656 nsv1938 17 147406 194801 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1334,nssv4240,nssv5627,nssv5626,nssv6694,nssv2156 M 9 5 0 "" NA12156,NA12878,NA18555,NA19129,NA19240 esv33635 17 184117 193065 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98910,essv100833,essv94041 M 51 3 0 "" 21606,21656,21802 esv33596 17 194692 198788 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97490,essv96794,essv95071,essv98243,essv94679,essv94089,essv94437,essv97004,essv95551,essv95387,essv94500,essv92961,essv92771,essv93773,essv99637,essv94994,essv92527,essv96483,essv99272,essv97664,essv100579,essv100317,essv98363,essv96392 M 51 0 24 "" 21616,21659,21721,21772,21791,21802,21808,21817,21847,21872,21932,21939,21944,21972,22217,22231,22233,22261,22275,22278,22298,22300,22352,22371 nsv1939 17 214574 218243 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10106 S 9 1 0 "" NA18956 nsv522031 17 285508 500830 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694800 S 2026 1 0 "" dgv924e1 17 343377 440727 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv232,essv14622 M 271 0 0 "" NA19093 nsv469805 17 373080 560333 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649826 M 265 0 0 Samples from several populations that are part of the HapMap project. "" nsv111966 17 398513 398610 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130544 M 24 "" nsv9485 17 444399 447066 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24534 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19173 nsv1940 17 475101 506196 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5628 S 9 1 0 "" NA19129 nsv457631 17 483164 725000 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534776 S 1557 1 0 "" 1782681079_A nsv469891 17 513693 687824 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649912 M 265 0 0 Samples from several populations that are part of the HapMap project. "" dgv925e1 17 568336 880135 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv277,essv2132 M 271 0 0 "" NA18978 esv673 17 568336 1008155 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent + Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 "" esv35056 17 639270 800382 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6986560,essv6978207 M 771 1 0 "" NA18978 nsv817749 17 642766 797292 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417621 S 112 1 0 "" NA18978 nsv509643 17 645069 663230 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619704 S 4 1 0 "" NA10860 nsv9486 17 655962 657896 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26771 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18517 dgv172n21 17 666202 856403 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv526414,nsv518457 M 2026 2 0 "" nsv457633 17 673882 725000 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534777 S 1557 0 1 "" NINDS_203 esv2751769 17 682518 953196 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6981969,essv6981967,essv6981968 M 771 1 0 "" BEC_51 nsv112227 17 685675 685807 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130805 M 24 "" nsv111968 17 685675 686074 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130546 M 24 "" nsv469582 17 707747 851359 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649696 M 265 0 0 Samples from several populations that are part of the HapMap project. "" essv3392 17 707754 1008155 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18945 nsv517783 17 710822 725000 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv682324,nssv667568,nssv653240 M 2026 3 0 "" nsv112186 17 743696 743752 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130764 M 24 "" nsv112140 17 748377 748972 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130718 M 24 "" nsv112506 17 764040 764174 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv131084 M 24 "" nsv112448 17 764265 764399 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv131026 M 24 "" nsv112116 17 765866 765866 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130694 M 24 "" nsv521627 17 777859 783381 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698246 S 2026 1 0 "" essv8 17 800382 897708 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18945 nsv111703 17 834210 834383 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130281 M 24 "" nsv524326 17 856403 941485 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700232 S 2026 0 1 "" nsv525233 17 862118 863896 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701322 S 2026 0 1 "" nsv9487 17 863873 868438 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23188 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18853 nsv509644 17 875663 1064447 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619705 S 4 1 0 "" NA10860 nsv1941 17 882334 925417 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4241,nssv6695,nssv5629,nssv2959 M 9 4 0 "" NA12156,NA12878,NA18555,NA19129 nsv1942 17 886764 931107 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2157 S 9 0 1 "" NA18555 nsv111824 17 895437 895488 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130402 M 24 "" nsv833332 17 907029 997949 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453044,nssv1453043,nssv1453045 M 95 0 3 "" nsv9488 17 911452 915696 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20710,nssv28163,nssv26651,nssv23341,nssv22802,nssv23892,nssv24824,nssv24627,nssv23439,nssv24201,nssv22732,nssv23216,nssv22799 M 31 3 10 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10863,NA11830,NA12740,NA12802,NA18563,NA18853,NA18975,NA19007,NA19132,NA19144,NA19221 nsv833333 17 925649 988412 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453047,nssv1453046,nssv1453048,nssv1453049 M 95 0 4 "" nsv9489 17 957448 974720 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23919,nssv23552,nssv22132,nssv23765,nssv24849,nssv26583,nssv23467,nssv24073,nssv26664,nssv25978,nssv24227,nssv23399,nssv22828,nssv23891,nssv24653,nssv25583,nssv20770,nssv20765,nssv27113,nssv22831,nssv22791,nssv25343,nssv28165 M 31 23 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10847,NA10863,NA11830,NA12155,NA12740,NA12802,NA18504,NA18537,NA18563,NA18564,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19144,NA19221,NA19240 nsv111934 17 1003367 1003454 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130512 M 24 "" nsv515593 17 1031081 1039169 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv660589,nssv664029 M 2026 0 2 "" nsv517261 17 1044134 1045474 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv682573,nssv676637,nssv654153 M 2026 0 3 "" nsv111697 17 1060424 1060519 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130275 M 24 "" nsv509645 17 1099652 1184634 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619706,nssv623707 M 4 2 0 "" NA10860,NA18994 nsv112570 17 1100027 1100278 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv131148 M 24 "" nsv112255 17 1100239 1100382 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130833 M 24 "" nsv1944 17 1151644 1174715 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5630 S 9 1 0 "" NA19129 nsv519959 17 1156618 1156739 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv692057,nssv685907,nssv688837,nssv659685,nssv677064,nssv687362 M 2026 0 6 "" nsv528360 17 1180385 1215433 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704947 S 2026 1 0 "" nsv527426 17 1184804 1191742 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703865 S 2026 1 0 "" nsv833334 17 1261371 1432425 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453050 S 95 0 1 "" nsv516805 17 1312497 1337249 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv671051,nssv688467 M 2026 0 2 "" nsv112511 17 1399542 1399898 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv131089 M 24 "" nsv457635 17 1404589 1488940 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534778 S 1557 1 0 "" 1780854465_A nsv1945 17 1410652 1439096 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1335 S 9 1 0 "" NA19240 nsv527897 17 1457008 1488940 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704401 S 2026 0 1 "" nsv516055 17 1477021 1488940 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv677942,nssv679125,nssv688657,nssv661514,nssv693875,nssv663320,nssv654915,nssv672843,nssv688068,nssv679357,nssv657900,nssv696884,nssv655446,nssv688743,nssv682489,nssv665898,nssv685892,nssv661466,nssv658380,nssv684253,nssv699945,nssv674089 M 2026 2 20 "" nsv9490 17 1503472 1679037 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23918 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18980 nsv516886 17 1558949 1604403 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv654693,nssv682227,nssv692260,nssv672239,nssv679402 M 2026 0 5 "" nsv833335 17 1563999 1677888 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453052,nssv1453051 M 95 1 1 "" nsv1946 17 1567534 1631614 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7299,nssv1336,nssv10107 M 9 3 0 "" NA12156,NA18956,NA19240 esv33335 17 1629757 1898716 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93944,essv94004,essv95370,essv96178,essv96617,essv92625,essv96572 M 51 0 7 "" 21634,21802,21872,22007,22011,22233,22261 nsv111745 17 1767925 1768306 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130323 M 24 "" nsv112532 17 1768233 1768319 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv131110 M 24 "" nsv523761 17 1791269 1831875 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699581 S 2026 0 1 "" nsv112398 17 1805397 1805397 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130976 M 24 "" esv33884 17 1899588 1900537 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101517,essv95249,essv94625,essv93574,essv93352,essv99273 M 51 6 0 "" 21603,21872,21932,22128,22170,22275 nsv111717 17 1902984 1903123 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130295 M 24 "" nsv519347 17 1924612 1928230 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696804 S 2026 0 1 "" nsv833336 17 2026966 2250500 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453053 S 95 0 1 "" nsv469765 17 2063199 2250490 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649786 M 265 0 0 Samples from several populations that are part of the HapMap project. "" nsv517489 17 2194732 2245724 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv674090,nssv652171,nssv696223 M 2026 0 3 "" nsv833338 17 2213651 2442249 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453055,nssv1453054 M 95 0 2 "" nsv112269 17 2258324 2258660 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130847 M 24 "" nsv111844 17 2267130 2274164 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130422 M 24 "" nsv525358 17 2375258 2380774 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701477 S 2026 1 0 "" nsv817750 17 2375258 2380774 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416279 S 112 1 0 "" NA12057 nsv112187 17 2406365 2410419 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130765 M 24 "" nsv833339 17 2428808 2619819 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453056,nssv1453057 M 95 0 2 "" nsv516756 17 2482617 2525398 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv689971,nssv670647,nssv673653,nssv659332 M 2026 4 0 "" nsv833340 17 2555411 2633546 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453060,nssv1453059,nssv1453058 M 95 1 2 "" nsv507830 17 2608995 2614995 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623218,nssv620610 M 4 2 0 "" NA15510,NA18994 nsv112042 17 2736199 2739908 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130620 M 24 "" nsv7288 17 2874107 3091249 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9319,nssv5631,nssv4242 M 9 0 0 "" NA12878,NA18517,NA19129 nsv457636 17 2889096 2891528 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534779 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00788 dgv3n29 17 2936687 3106602 CNV Complex Locke et al 2006 16826518 BAC_aCGH nsv469601,nsv469600 M 265 0 0 "" nsv523342 17 2953235 2966540 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699091 S 2026 1 0 "" nsv515684 17 2956705 2972503 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705396,nssv705539,nssv664382,nssv672985,nssv701064,nssv688171,nssv696986 M 2026 5 2 "" nsv469609 17 2965195 3106615 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649533 M 265 0 13 Samples from several populations that are part of the HapMap project. "" nsv519177 17 3008693 3010402 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696660 S 2026 0 1 "" nsv526486 17 3010392 3106246 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702795 S 2026 1 0 "" nsv457637 17 3048441 3109030 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534780 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01319 nsv507831 17 3085150 3091150 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619179 S 4 1 0 "" NA10860 nsv457638 17 3128134 3161719 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534781 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00544 nsv457639 17 3128134 3194402 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534782 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00540 nsv520474 17 3160478 3167294 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv692801,nssv671709 M 2026 0 2 "" nsv507832 17 3167189 3173189 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620611,nssv619180,nssv623219 M 4 3 0 "" NA10860,NA15510,NA18994 nsv833341 17 3202287 3371434 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453061 S 95 0 1 "" nsv521277 17 3240088 3318929 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv691624,nssv692294 M 2026 2 0 "" nsv528368 17 3309819 3357652 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704955 S 2026 1 0 "" nsv525085 17 3336758 3340194 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701143 S 2026 1 0 "" nsv526538 17 3365426 3366274 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702852 S 2026 0 1 "" nsv527923 17 3378436 3409617 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704430 S 2026 0 1 "" nsv526175 17 3378436 3466464 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702436 S 2026 1 0 "" nsv516676 17 3403485 3502173 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv685266,nssv682729,nssv663645,nssv670098,nssv662273,nssv684146,nssv697356 M 2026 2 5 "" dgv358n27 17 3451964 3514210 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv457642,nsv457641,nsv457643 M 1557 0 3 "" 1780854416_A,1780854495_A,1780862528_A nsv833342 17 3476231 3656125 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453064,nssv1453065,nssv1453062,nssv1453063,nssv1453066,nssv1453067 M 95 0 6 "" nsv1947 17 3491925 3523885 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5632 S 9 1 0 "" NA19129 nsv1948 17 3524810 3569522 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7300 S 9 0 1 "" NA12156 nsv111790 17 3535890 3536026 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130368 M 24 "" nsv469791 17 3550803 3735942 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649812 M 265 0 0 Samples from several populations that are part of the HapMap project. "" nsv1949 17 3595073 3627673 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1337 S 9 1 0 "" NA19240 nsv833343 17 3672216 3830266 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453075,nssv1453073,nssv1453074,nssv1453070,nssv1453072,nssv1453071,nssv1453069,nssv1453068 M 95 0 8 "" nsv520428 17 3672648 3685739 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697412 S 2026 1 0 "" nsv526126 17 3710682 3843556 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702378 S 2026 0 1 "" nsv524296 17 3740052 3785375 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700197 S 2026 0 1 "" nsv521340 17 3740052 3826897 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697948 S 2026 1 0 "" nsv517834 17 3754781 3826897 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695238 S 2026 0 1 "" nsv527732 17 3822378 3824770 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704215 S 2026 0 1 "" nsv515807 17 3824141 3824770 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv657200,nssv652153 M 2026 0 2 "" nsv1950 17 3843845 3878746 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1339 S 9 1 0 "" NA19240 nsv833344 17 3865103 4055315 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453076 S 95 1 0 "" nsv457647 17 3952270 4020147 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534786 S 1557 1 0 "" 1782681317_A esv2751682 17 3966715 4036632 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6983501,essv6983502 M 771 1 0 "" BEC_662 dgv173n21 17 3994830 4032583 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv522552,nsv526907 M 2026 2 0 "" nsv519311 17 3999315 4012972 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696785 S 2026 0 1 "" nsv527709 17 4003291 4010483 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704189 S 2026 0 1 "" nsv518891 17 4008027 4011278 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696350 S 2026 0 1 "" nsv525930 17 4008027 4012972 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702135 S 2026 0 1 "" nsv1951 17 4085757 4118144 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4243 S 9 1 0 "" NA12878 nsv515940 17 4127871 4195148 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv685730,nssv696385,nssv665389,nssv678272,nssv672176,nssv667379,nssv658147,nssv684421 M 2026 5 3 "" nsv833345 17 4178539 4358570 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453079,nssv1453078,nssv1453077 M 95 0 3 "" nsv457650 17 4266355 4329478 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534787 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00813 nsv520005 17 4270043 4274255 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703291,nssv679078,nssv704483,nssv702389,nssv660031 M 2026 0 5 "" nsv518749 17 4469916 4479446 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696198 S 2026 0 1 "" nsv833346 17 4496300 4710353 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453083,nssv1453082,nssv1453081,nssv1453080 M 95 0 4 "" nsv519349 17 4496938 4512466 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696805 S 2026 0 1 "" nsv111849 17 4564808 4564907 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130427 M 24 "" nsv1952 17 4576289 4598933 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5634 S 9 1 0 "" NA19129 nsv833347 17 4635332 4800000 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453086,nssv1453084,nssv1453085 M 95 0 3 "" nsv833349 17 4703111 4835319 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453088,nssv1453087,nssv1453089 M 95 0 3 "" nsv1953 17 4710314 4740817 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6696,nssv1340,nssv10108,nssv4244,nssv5635,nssv2158 M 9 6 0 "" NA12156,NA12878,NA18555,NA18956,NA19129,NA19240 nsv509647 17 4714617 4762745 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623708,nssv621034,nssv619707 M 4 3 0 "" NA10860,NA15510,NA18994 nsv833350 17 4728791 4904795 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453090 S 95 0 1 "" nsv509648 17 4881245 4935471 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623709,nssv619708 M 4 2 0 "" NA10860,NA18994 nsv112540 17 5021547 5021673 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv131118 M 24 "" nsv1955 17 5132770 5177353 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2159 S 9 0 1 "" NA18555 nsv1956 17 5314504 5353626 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7301 S 9 0 1 "" NA12156 nsv528302 17 5326122 5337421 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704878 S 2026 0 1 "" nsv1957 17 5404002 5415364 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4245 S 9 1 0 "" NA12878 nsv457653 17 5652674 5665837 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534789 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00694 nsv519243 17 5669057 5670943 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696736 S 2026 1 0 "" nsv111904 17 5684146 5692038 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130482 M 24 "" nsv457654 17 5690836 5714624 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534790 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01323 nsv524677 17 5713000 5719289 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700648 S 2026 0 1 "" nsv1958 17 5726487 5741568 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9537 S 9 1 0 "" NA18507 nsv507833 17 5733362 5739362 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617917 S 4 1 0 "" CHM nsv457655 17 5753252 5859286 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534791 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01036 nsv112057 17 5874342 5874658 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130635 M 24 "" nsv516089 17 5901573 5902369 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv669748,nssv691849,nssv674559,nssv654319,nssv661627,nssv659574,nssv666124,nssv672312,nssv670609,nssv669508,nssv663171,nssv679279 M 2026 0 12 "" nsv442408 17 5901573 5903107 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv524445 17 5901573 5910843 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700378 S 2026 0 1 "" nsv1959 17 5966976 5997297 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7302 S 9 0 1 "" NA12156 nsv457656 17 6013193 6071817 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534792 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01201 nsv509649 17 6027977 6039629 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618121 S 4 1 0 "" CHM nsv1960 17 6030439 6048857 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4246 S 9 1 0 "" NA12878 nsv457657 17 6033270 6076564 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534793 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01264 dgv926e1 17 6034605 6087870 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv13285,esv1033 M 271 0 0 "" NA19202 nsv517031 17 6038618 6077274 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv654643,nssv663357,nssv683448,nssv686707,nssv686598,nssv685093,nssv652895,nssv676079,nssv677574,nssv653052,nssv658453,nssv665413,nssv684439,nssv666434,nssv667679,nssv659964,nssv653646,nssv671624,nssv664080,nssv681191,nssv673025,nssv653189,nssv660273,nssv673898,nssv661322,nssv666922,nssv680628,nssv681079,nssv689504,nssv658250,nssv673787,nssv693959,nssv666342,nssv671396,nssv669240,nssv684021,nssv663887,nssv675168,nssv675020,nssv688931,nssv658714 M 2026 0 41 "" essv8712 17 6047210 6087870 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19200 nsv442409 17 6047214 6073498 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv521701 17 6218382 6218612 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694474 S 2026 0 1 "" nsv522153 17 6228715 6232132 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694926 S 2026 0 1 "" esv2751768 17 6228993 6251460 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6982009,essv6982008 M 771 1 0 "" BEC_512 dgv174n21 17 6237444 6252121 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv520718,nsv520009 M 2026 3 0 "" nsv457658 17 6237444 6252121 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534794 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00896 nsv519881 17 6302512 6303457 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv659295,nssv673505 M 2026 0 2 "" nsv524539 17 6302512 6313993 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700489 S 2026 0 1 "" nsv526449 17 6373023 6373699 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702752 S 2026 0 1 "" nsv510432 17 6568629 6574629 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624183 S 4 0 1 "" NA18994 esv2422288 17 6633976 7490752 CNV Deletion Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161417 S 181 0 1 "" ND01705 nsv521515 17 6699238 6801331 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698132 S 2026 0 1 "" nsv518777 17 6739102 6742988 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696230 S 2026 1 0 "" nsv1961 17 6788929 6824697 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1341 S 9 0 1 "" NA19240 nsv457659 17 6854376 7533505 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534795 S 1557 0 1 "" NINDS_91 nsv111719 17 6872480 6872480 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130297 M 24 "" nsv112411 17 6872542 6872542 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130989 M 24 "" nsv482199 17 6885673 6887966 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558560 S 1 1 0 "" KB1 nsv516297 17 6907775 6915009 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv658715,nssv667398 M 2026 0 2 "" nsv1962 17 7045223 7078110 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6697 S 9 1 0 "" NA12156 nsv1963 17 7088628 7177898 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4247 S 9 0 1 "" NA12878 nsv509650 17 7143122 7182757 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619709,nssv623710 M 4 2 0 "" NA10860,NA18994 nsv523672 17 7223868 7393701 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699476 S 2026 0 1 "" nsv526176 17 7260866 7276779 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702437 S 2026 1 0 "" nsv833351 17 7599734 7737906 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453091,nssv1453092 M 95 0 2 "" nsv518326 17 7628907 7659220 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695756 S 2026 1 0 "" nsv457660 17 7725020 7796844 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534796 S 1557 0 1 "" 1780862399_A nsv833352 17 7873762 8031618 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453098,nssv1453095,nssv1453097,nssv1453099,nssv1453096,nssv1453094,nssv1453093 M 95 0 7 "" nsv528325 17 7892544 7895090 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704906 S 2026 0 1 "" nsv518133 17 7950629 7950953 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695549 S 2026 0 1 "" nsv457661 17 7950629 7991704 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534797 S 1557 0 1 "" NINDS_3 nsv523885 17 7950889 7950953 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699727 S 2026 0 1 "" nsv112429 17 7952053 7952053 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv131007 M 24 "" nsv518983 17 7968318 7991704 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696451 S 2026 0 1 "" nsv1964 17 7984136 8019263 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4248 S 9 1 0 "" NA12878 nsv527475 17 7984478 8033419 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703919 S 2026 0 1 "" nsv516242 17 7988894 7991704 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv678432,nssv667001 M 2026 0 2 "" nsv833353 17 7994103 8170826 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453101,nssv1453100 M 95 0 2 "" nsv527633 17 8139886 8157462 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704102 S 2026 0 1 "" nsv1967 17 8144451 8189367 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7303 S 9 0 1 "" NA12156 nsv457664 17 8155442 8198338 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534799 S 1557 1 0 "" 1780862084_A nsv1968 17 8237373 8261131 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4249,nssv1342,nssv7305 M 9 3 0 "" NA12156,NA12878,NA19240 nsv509651 17 8239776 8288558 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621035 S 4 1 0 "" NA15510 nsv112058 17 8304205 8310973 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130636 M 24 "" nsv111760 17 8325087 8325155 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130338 M 24 "" nsv111869 17 8325156 8325224 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130447 M 24 "" nsv510433 17 8378169 8384169 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621442,nssv624184,nssv622269,nssv618423 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv510434 17 8415583 8421583 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618424,nssv624185,nssv622270,nssv621443 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv112539 17 8536772 8536952 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv131117 M 24 "" nsv518675 17 8540429 8662333 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696125 S 2026 1 0 "" nsv517666 17 8542005 8544692 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv657901,nssv652767 M 2026 0 2 "" nsv1969 17 8624724 8669909 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7306 S 9 0 1 "" NA12156 nsv521208 17 8647176 8647754 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697846 S 2026 0 1 "" nsv1970 17 8687216 8732167 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7307 S 9 0 1 "" NA12156 nsv510696 17 8716259 8773269 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622714 S 4 0 1 "" NA18994 nsv833354 17 8765888 8919717 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453102 S 95 0 1 "" nsv519210 17 8824503 8830866 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696700 S 2026 0 1 "" nsv7289 17 8856047 9522889 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4251,nssv9320,nssv10109,nssv2162,nssv1344,nssv2163 M 9 0 0 "" NA12878,NA18517,NA18555,NA18956,NA19240 nsv516433 17 8861324 8867899 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv693309,nssv668334 M 2026 0 2 "" nsv833355 17 8898858 9074649 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453103 S 95 0 1 "" nsv1971 17 8905162 8917856 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1343,nssv4250 M 9 2 0 "" NA12878,NA19240 nsv519212 17 8914277 8933807 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696701 S 2026 1 0 "" nsv111830 17 9005941 9006057 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130408 M 24 "" nsv519249 17 9064619 9099875 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696741 S 2026 0 1 "" nsv521247 17 9071043 9086693 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697413,nssv689704,nssv688335 M 2026 0 3 "" nsv833356 17 9137748 9332478 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453105,nssv1453104 M 95 2 0 "" nsv528816 17 9141140 9148178 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705490 S 2026 0 1 "" nsv521947 17 9141551 9141636 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694716 S 2026 1 0 "" dgv175n21 17 9178470 9182843 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv527589,nsv518614 M 2026 0 2 "" nsv509652 17 9185024 9218076 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621036 S 4 1 0 "" NA15510 esv33701 17 9197787 9205922 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93871,essv100978,essv95159,essv98312,essv93978,essv97821,essv95482,essv93070,essv95773,essv92861,essv96160,essv93449,essv96558,essv97778,essv100122,essv100456,essv100345 M 51 0 17 "" 21634,21693,21721,21772,21802,21837,21847,21863,21911,21939,22007,22128,22261,22278,22286,22298,22300 nsv153 17 9198372 9199615 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv153 S 1 1 0 "" NA15510 nsv1972 17 9198372 9199615 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10965 S 9 1 0 "" NA15510 nsv111672 17 9209018 9210166 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130250 M 24 "" nsv524312 17 9246895 9249026 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700214 S 2026 0 1 "" nsv1973 17 9305189 9341018 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7308,nssv2164 M 9 2 0 "" NA12156,NA18555 nsv528692 17 9316144 9321546 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705335 S 2026 1 0 "" nsv833357 17 9362399 9540648 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453107,nssv1453106 M 95 0 2 "" nsv1974 17 9371798 9390173 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10110 S 9 1 0 "" NA18956 nsv1975 17 9452859 9486156 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1345 S 9 1 0 "" NA19240 nsv833358 17 9487785 9672288 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453108 S 95 1 0 "" nsv510697 17 9573683 9656132 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617427 S 4 0 1 "" CHM nsv833360 17 9578676 9745028 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453109 S 95 0 1 "" dgv176n21 17 9612883 9616859 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv527124,nsv521132 M 2026 0 3 "" nsv528877 17 9614258 9616859 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705557 S 2026 0 1 "" nsv1976 17 9629661 9674697 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7309 S 9 0 1 "" NA12156 nsv833361 17 9629905 9823132 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453110 S 95 1 0 "" dgv38n68 17 9741074 9937622 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH nsv833363,nsv833362 M 95 0 5 "" nsv516119 17 9745218 9761420 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv684355,nssv666317 M 2026 0 2 "" nsv1978 17 9778878 9780289 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5636 S 9 1 0 "" NA19129 nsv833364 17 9865573 10035291 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453116 S 95 1 0 "" nsv520771 17 9917302 10372000 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704582,nssv678986,nssv681464,nssv686382,nssv688187,nssv698606,nssv703147,nssv675196,nssv699406,nssv695877,nssv695051 M 2026 5 6 "" nsv833365 17 9979758 10130238 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453117 S 95 1 0 "" dgv359n27 17 10112605 10142840 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv457666,nsv457665 M 1557 2 0 "" HGDP01244,HGDP01305 nsv457667 17 10128654 10154767 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534802 S 1557 0 1 "" 1782681110_A nsv833366 17 10195548 10345813 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453118 S 95 1 0 "" nsv507834 17 10261088 10267088 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623220,nssv620612 M 4 2 0 "" NA15510,NA18994 nsv833367 17 10527883 10670675 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453119 S 95 0 1 "" nsv523093 17 10648010 10651899 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698785 S 2026 0 1 "" nsv515551 17 10705319 10705934 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv666783,nssv663886,nssv691477,nssv664777,nssv659834,nssv667522 M 2026 0 6 "" nsv833368 17 10736300 10882638 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453120 S 95 1 0 "" nsv522189 17 10744138 10749538 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694964 S 2026 0 1 "" nsv112575 17 10827584 10836460 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv131153 M 24 "" nsv457668 17 10828987 10840419 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534803 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00954 nsv517386 17 10830346 10836404 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv675636,nssv691438,nssv666452,nssv676931,nssv651869,nssv665435,nssv664980,nssv672310,nssv689667,nssv687933,nssv664163,nssv690758,nssv670237,nssv661321,nssv666897 M 2026 0 15 "" nsv833369 17 10887573 11072124 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453121 S 95 0 1 "" nsv1979 17 10921286 10966760 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6698 S 9 0 1 "" NA12156 dgv50n17 17 10959235 10977806 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437814,nsv437811 M 60 0 2 "" NA18863,NA19208 nsv517122 17 10970310 10976324 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv690153,nssv673869,nssv665534,nssv662357,nssv664062,nssv654317,nssv678049,nssv667122,nssv691906,nssv690343,nssv671147,nssv684908,nssv674436,nssv691847,nssv683075,nssv692490,nssv667064,nssv653821,nssv677273,nssv685690,nssv670163,nssv673220,nssv665436,nssv682904,nssv685960 M 2026 0 25 "" nsv517798 17 10976324 10987551 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695201 S 2026 1 0 "" nsv9492 17 10978582 11038431 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28167 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19221 nsv457669 17 11125882 11150676 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534804 S 1557 0 1 "" NINDS_160 nsv112054 17 11131755 11131755 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130632 M 24 "" nsv833371 17 11132723 11344170 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453122 S 95 1 0 "" nsv523923 17 11156730 11162804 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699768 S 2026 0 1 "" nsv457670 17 11156730 11174760 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534805 S 1557 0 1 "" 1780862001_A nsv154 17 11157980 11202026 CNV Loss Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv154 S 1 0 1 "" NA15510 nsv1980 17 11157980 11202026 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10966 S 9 0 1 "" NA15510 nsv518545 17 11162804 11165079 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695988 S 2026 1 0 "" nsv519168 17 11175344 11181147 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696650 S 2026 0 1 "" nsv526919 17 11179760 11181147 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703282 S 2026 0 1 "" nsv510698 17 11188187 11240228 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620095 S 4 0 1 "" NA15510 nsv433304 17 11190944 11207572 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463185 S 9 0 1 "" NA15510 esv33600 17 11191993 11199898 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98696,essv97040,essv99060,essv93680,essv98604,essv99667,essv98448 M 51 7 0 "" 21606,21817,21938,21972,22085,22217,22352 nsv1981 17 11343582 11374615 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7310 S 9 0 1 "" NA12156 nsv112347 17 11423125 11423125 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130925 M 24 "" nsv1982 17 11441241 11447734 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7311 S 9 1 0 "" NA12156 nsv1983 17 11929273 11959317 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1346 S 9 1 0 "" NA19240 dgv177n21 17 12000976 12026365 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv519225,nsv516020 M 2026 5 0 "" nsv521164 17 12060510 12074911 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697822 S 2026 0 1 "" nsv111935 17 12137305 12137621 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130513 M 24 "" nsv515526 17 12139547 12143063 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv663829,nssv669211 M 2026 0 2 "" nsv524704 17 12143063 12155589 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700687 S 2026 0 1 "" nsv457671 17 12173209 12197672 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534806 S 1557 0 1 "" NINDS_127 nsv521166 17 12186550 12188938 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697823 S 2026 1 0 "" nsv1984 17 12282854 12330639 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5637,nssv9538,nssv1347,nssv10111,nssv4252 M 9 0 5 "" NA12878,NA18507,NA18956,NA19129,NA19240 nsv1985 17 12325164 12358625 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4253 S 9 1 0 "" NA12878 nsv528136 17 12368962 12383556 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704681 S 2026 0 1 "" nsv528173 17 12502970 12505336 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704722 S 2026 0 1 "" nsv524458 17 12582057 12588133 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700392 S 2026 0 1 "" nsv833372 17 12669548 12800643 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453123 S 95 0 1 "" nsv112059 17 12757741 12757794 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130637 M 24 "" nsv1986 17 12848405 12878905 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6699 S 9 1 0 "" NA12156 nsv833373 17 12930070 13098904 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453124 S 95 1 0 "" nsv457672 17 12937680 12964321 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534807 S 1557 0 1 "" 1780862312_A nsv1987 17 13024783 13056163 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7312 S 9 0 1 "" NA12156 nsv833374 17 13102483 13265727 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453125 S 95 1 0 "" nsv516172 17 13117537 13174929 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv666624,nssv674974 M 2026 2 0 "" nsv457675 17 13135914 13172613 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534809 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01286 nsv111988 17 13311362 13311362 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130566 M 24 "" nsv833375 17 13317394 13506230 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453126 S 95 0 1 "" nsv111994 17 13345231 13345336 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130572 M 24 "" nsv469679 17 13415315 13594294 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649610 M 265 0 8 Samples from several populations that are part of the HapMap project. "" nsv471696 17 13415316 13594294 CNV Gain+Loss Sharp et al 2005 15918152 BAC_aCGH,FISH Eichler Segmental Duplication BAC array nssv549982,nssv549980,nssv549985,nssv549979,nssv549988,nssv549989,nssv549981,nssv549987,nssv549983,nssv549990,nssv549986,nssv549984 M 48 10 2 "" JK1688,NA10473,NA11323,NA15726,NA15731,NA15733,NA16688,NA16689,NA17015,NA17052,NA17059,P86GA nsv9493 17 13498240 13499738 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23792 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA10839 nsv507835 17 13501087 13507087 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620613 S 4 1 0 "" NA15510 nsv9494 17 13560483 13565386 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23495,nssv26597,nssv26677 M 31 0 3 Samples from several populations that are part of the HapMap project. "" NA18563,NA18972,NA19132 dgv48n6 17 13645270 13645574 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv111728,nsv112583 M 24 "" nsv522060 17 13740642 13748934 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694831 S 2026 0 1 "" nsv519674 17 13792989 13793379 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696985 S 2026 0 1 "" dgv927e1 17 13821966 14069281 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv616,essv9058 M 271 0 0 "" NA19132 nsv1989 17 13856005 13875551 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7313 S 9 0 1 "" NA12156 essv14935 17 13900781 13965204 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19132 esv2751618 17 13978033 15421834 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6985983,essv6985982,essv6985981,essv6990174,essv6989511 M 771 0 1 "" SPC_93 nsv9495 17 13981856 13988010 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28169 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19221 nsv510699 17 13995685 14018532 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618940 S 4 0 1 "" NA10860 nsv517192 17 14000908 15411904 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv673294,nssv674366,nssv698403,nssv678808,nssv667172,nssv690181,nssv691015,nssv654154,nssv691226,nssv663779,nssv656260,nssv670878,nssv675960,nssv676377,nssv704845,nssv688333,nssv670096,nssv696433,nssv697918,nssv700253,nssv687547,nssv691439,nssv657534,nssv686068,nssv673617,nssv700504,nssv654176,nssv672373,nssv685439,nssv685140,nssv695615,nssv682701,nssv679755,nssv685179,nssv653976,nssv683468,nssv655279,nssv672015,nssv686679,nssv687084,nssv676638,nssv660226,nssv670534,nssv678215,nssv696077,nssv660433,nssv669133 M 2026 14 33 "" nsv457676 17 14207722 14233633 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534810 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00686 nsv433168 17 14350387 14351933 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463049 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA18956 nsv833376 17 14413537 14607154 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453127 S 95 1 0 "" nsv457677 17 14479927 14516314 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534811 S 1557 0 1 "" 1782681294_A nsv507836 17 14608754 14614754 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623221,nssv619182 M 4 2 0 "" NA10860,NA18994 nsv457678 17 14826612 14839198 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534812 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01185 nsv457679 17 14843143 14856327 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534813 S 1557 0 1 "" NINDS_132 dgv360n27 17 14968730 15000001 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv457683,nsv457682,nsv457680,nsv457681 M 1557 0 4 "" HGDP00812,HGDP01180,HGDP01288,HGDP01399 nsv1990 17 14981992 15034769 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2165 S 9 0 1 "" NA18555 nsv9496 17 14984106 14999875 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23580,nssv23720,nssv20839,nssv22820 M 31 0 4 Samples from several populations that are part of the HapMap project. "" NA18552,NA18564,NA18572,NA18975 nsv442735 17 14984651 14995227 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv433305 17 14984724 14998961 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463186 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA18555 nsv817752 17 14984724 14998961 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417690,nssv1417164,nssv1417612 M 112 0 3 "" NA18547,NA18978,NA18999 nsv438272 17 14984724 14999250 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470667,nssv470669,nssv470668 M 269 0 3 Samples from several populations that are part of the HapMap project. "" NA18572,NA18592,NA18991 dgv361n27 17 14984724 15001332 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv457684,nsv457693,nsv457692,nsv457690,nsv457691,nsv457686,nsv457694,nsv457687,nsv457689,nsv457688 M 1557 0 10 "" HGDP00161,HGDP00583,HGDP00758,HGDP00832,HGDP00977,HGDP01209,HGDP01231,HGDP01240,HGDP01312,HGDP01341 nsv1991 17 15070002 15094782 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1348 S 9 1 0 "" NA19240 nsv1992 17 15254790 15285930 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1350 S 9 1 0 "" NA19240 nsv7290 17 15347887 18719255 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5640,nssv1356,nssv1352,nssv1351,nssv1355,nssv6700,nssv9541,nssv9540,nssv1354,nssv5644,nssv9321,nssv10967,nssv5639,nssv6705,nssv6706 M 9 0 0 "" NA12156,NA15510,NA18507,NA18517,NA19129,NA19240 nsv457695 17 15388089 15552220 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534829 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00800 nsv442736 17 15483886 15487515 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv520426 17 15495286 15588448 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697411 S 2026 0 1 "" nsv522130 17 15504118 15533487 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694903 S 2026 0 1 "" nsv518620 17 15504118 15548919 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696068 S 2026 0 1 "" nsv522564 17 15533487 15548919 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705947 S 2026 0 1 "" nsv515999 17 15548919 15552220 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv665648,nssv690887,nssv683992,nssv654842,nssv692730 M 2026 0 5 "" nsv518765 17 15568054 15585231 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694272 S 2026 0 1 "" nsv516755 17 15585231 15588448 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv659742,nssv670646 M 2026 0 2 "" nsv524553 17 15588448 15620326 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700505 S 2026 0 1 "" nsv442410 17 15591355 15614730 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv442411 17 15617726 15635510 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv519373 17 15618609 15620326 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv692539,nssv655731,nssv683946 M 2026 0 3 "" nsv1993 17 15699923 15739754 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5638 S 9 0 1 "" NA19129 nsv510700 17 15729342 15739451 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620096 S 4 0 1 "" NA15510 nsv833377 17 15852738 16045240 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453128 S 95 0 1 "" nsv522169 17 15864434 16088546 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694942 S 2026 1 0 "" nsv528263 17 16038155 16137721 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704830 S 2026 0 1 "" nsv112235 17 16057549 16060825 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130813 M 24 "" nsv1994 17 16133812 16134923 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10112 S 9 1 0 "" NA18956 nsv521494 17 16448673 16449625 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698105 S 2026 1 0 "" dgv928e1 17 16467781 16758162 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv17123,essv14358,esv836,essv15085,essv15689 M 271 0 0 "" NA18912,NA19129,NA19171,NA19194 dgv929e1 17 16512229 16674888 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv14897,essv2709 M 271 0 0 "" NA18944,NA19129 nsv833378 17 16536854 16691688 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453129 S 95 1 0 "" nsv111702 17 16543545 16543545 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130280 M 24 "" nsv442737 17 16598056 16665025 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv9497 17 16605420 16607338 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26689 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19132 nsv833379 17 16624310 16800264 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453130 S 95 1 0 "" nsv9498 17 16657056 16718531 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26782,nssv24874,nssv25998,nssv23945,nssv26611,nssv26700,nssv24100,nssv28171,nssv23244,nssv23427,nssv27123,nssv24560,nssv22860,nssv23523,nssv25606 M 31 1 14 Samples from several populations that are part of the HapMap project. "" NA07048,NA10863,NA18504,NA18517,NA18537,NA18563,NA18853,NA18860,NA18972,NA18980,NA19132,NA19144,NA19173,NA19221,NA19240 nsv155 17 16658684 18263022 OTHER Inversion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv155 S 1 0 0 "" NA15510 essv2125 17 16658950 16665029 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18959 dgv930e1 17 16658950 16674888 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv10188,essv16568,essv19378 M 271 0 0 "" NA07019,NA18516,NA19193 dgv931e1 17 16658950 16705555 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv19058,essv20878,essv21743 M 271 0 0 "" NA10861,NA11830,NA12145 nsv517238 17 16762350 16765229 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv678907,nssv689701,nssv667025,nssv654520,nssv692540,nssv675763,nssv654098 M 2026 0 7 "" nsv526289 17 16762350 16778090 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702570 S 2026 0 1 "" nsv524738 17 16802057 16804033 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700729 S 2026 0 1 "" nsv1995 17 16891980 16909266 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4254,nssv5642 M 9 2 0 "" NA12878,NA19129 nsv524958 17 16970443 17001530 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700979 S 2026 0 1 "" nsv1996 17 17010389 17042742 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6702 S 9 1 0 "" NA12156 nsv833380 17 17029141 17181931 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453131 S 95 0 1 "" nsv833382 17 17065054 17246408 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453133,nssv1453132 M 95 0 2 "" nsv469777 17 17068110 17213423 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649798 M 265 0 0 Samples from several populations that are part of the HapMap project. "" nsv9499 17 17122336 17128395 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24253,nssv27133,nssv28173 M 31 3 0 Samples from several populations that are part of the HapMap project. "" NA12740,NA18860,NA19221 esv33859 17 17130629 17148882 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98706 S 51 0 1 "" 21606 nsv112007 17 17171083 17171958 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130585 M 24 "" nsv9500 17 17173522 17176600 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24646 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19173 nsv515800 17 17262921 17285378 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv664821,nssv668349 M 2026 0 2 "" nsv523094 17 17355942 17371374 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698786 S 2026 0 1 "" nsv524158 17 17360924 17371374 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700037 S 2026 0 1 "" nsv833383 17 17405360 17449863 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453134,nssv1453135,nssv1453136 M 95 0 3 "" nsv833384 17 17432208 17586373 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453137 S 95 0 1 "" nsv1997 17 17466490 17499342 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6703 S 9 1 0 "" NA12156 nsv833385 17 17534762 17706303 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453138 S 95 0 1 "" nsv522668 17 17560584 17693534 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv706072 S 2026 0 1 "" nsv9501 17 17563922 17569515 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27173 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18860 nsv526904 17 17637480 17655826 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703264 S 2026 0 1 "" nsv817753 17 17637480 17655826 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417520 S 112 0 1 "" NA18968 nsv510701 17 17791199 17896210 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618941 S 4 0 1 "" NA10860 nsv457697 17 17944570 17987015 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534831 S 1557 0 1 "" NINDS_71 nsv510702 17 17978401 18057526 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622715 S 4 0 1 "" NA18994 nsv9503 17 18062199 18109891 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28175 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19221 nsv833386 17 18110986 18273451 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453139 S 95 1 0 "" nsv833387 17 18140806 18318880 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453142,nssv1453140,nssv1453141 M 95 0 3 "" nsv521075 17 18161495 18167806 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697770 S 2026 0 1 "" nsv509653 17 18172571 18250227 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621037,nssv619710,nssv623711 M 4 3 0 "" NA10860,NA15510,NA18994 dgv932e1 17 18175250 18387109 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv14381,essv8868,essv8165,essv268,essv10490,essv21701,essv12387,essv492,essv14733,essv10218,essv8186,essv884,essv11134,essv16495,essv13687,essv24799,essv9199,essv8430,essv9648,essv10127,esv78,essv16455,essv16990,essv12199,essv4887,essv15043,essv18230,essv18405,essv8947,essv11534,essv12358,essv9317,essv12502,essv16334,essv13481,essv6618,essv13645,essv5439,essv10699,essv8349,essv23360,essv17127,essv9130,essv14121,essv15568,essv14979,essv14345,essv16809,essv14566,essv15702,essv7265,essv12723,essv9102,essv1463,essv2003,essv17948,essv2833,essv16076,essv2194,essv10532,essv11686,essv17556,essv178,essv15457,essv3097,essv10317,essv9690,essv371,essv21265 M 271 0 0 "" NA10855,NA10860,NA12003,NA12057,NA12248,NA12249,NA12750,NA12762,NA18501,NA18505,NA18506,NA18507,NA18508,NA18515,NA18516,NA18561,NA18592,NA18621,NA18632,NA18853,NA18855,NA18858,NA18860,NA18861,NA18870,NA18872,NA18912,NA18913,NA18914,NA18944,NA18949,NA18952,NA18953,NA18960,NA18968,NA18969,NA18971,NA18978,NA19000,NA19101,NA19116,NA19119,NA19127,NA19128,NA19129,NA19130,NA19132,NA19137,NA19138,NA19139,NA19141,NA19144,NA19152,NA19154,NA19159,NA19171,NA19173,NA19192,NA19193,NA19194,NA19200,NA19202,NA19206,NA19207,NA19210,NA19211,NA19238,NA19240 nsv1998 17 18195776 18232090 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5643,nssv9539,nssv10969,nssv1353,nssv6704 M 9 5 0 "" NA12156,NA15510,NA18507,NA19129,NA19240 nsv156 17 18207841 18232090 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv156 S 1 1 0 "" NA15510 nsv833388 17 18215871 18395498 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453153,nssv1453143,nssv1453152,nssv1453150,nssv1453151,nssv1453149,nssv1453144,nssv1453154,nssv1453145,nssv1453148,nssv1453147,nssv1453146 M 95 0 12 "" nsv469661 17 18216697 18387102 CNV Gain Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649590 M 265 33 0 Samples from several populations that are part of the HapMap project. "" nsv9504 17 18233618 19082613 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26650,nssv23551,nssv26763,nssv22849,nssv23664,nssv26813,nssv28177,nssv23973,nssv20899,nssv20929,nssv21281,nssv25418,nssv22162,nssv24679,nssv20989,nssv26752,nssv21311,nssv26804,nssv23747,nssv24309,nssv26058,nssv20795,nssv26676,nssv26038,nssv23774,nssv21019,nssv24153,nssv26774,nssv23455,nssv26741,nssv24929,nssv25368,nssv25393,nssv20800,nssv23579,nssv20869,nssv24335,nssv26018,nssv26796,nssv26637,nssv24954,nssv23972,nssv20959,nssv24127,nssv23272,nssv23483,nssv25629,nssv22222,nssv24698,nssv23300,nssv23946,nssv27183,nssv26824,nssv26793,nssv23819,nssv22857,nssv22886,nssv26624,nssv22192,nssv26835,nssv24724,nssv25473,nssv26663,nssv25652,nssv23636,nssv24775,nssv23608,nssv22918,nssv26785,nssv24672,nssv26826,nssv24750,nssv26815,nssv22889 M 31 24 24 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10847,NA10863,NA11830,NA12155,NA12740,NA12802,NA12872,NA18502,NA18504,NA18517,NA18537,NA18552,NA18563,NA18564,NA18572,NA18853,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19144,NA19173,NA19221,NA19240 nsv442738 17 18296117 18405946 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv511052 17 18302690 18397864 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622418 S 4 0 0 "" NA10860 nsv833389 17 18503339 18688049 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453155,nssv1453157,nssv1453156 M 95 3 0 "" nsv523721 17 18503445 18858049 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699536 S 2026 1 0 "" nsv442412 17 18539508 18543256 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv112212 17 18570047 18578498 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130790 M 24 "" nsv833390 17 18630950 18820419 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453158 S 95 0 1 "" nsv442413 17 18636432 18642948 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv2000 17 18708790 18739268 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5645 S 9 1 0 "" NA19129 nsv112111 17 18731879 18732903 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130689 M 24 "" nsv833391 17 18750925 19082793 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453159 S 95 0 1 "" esv33572 17 18763085 19135083 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93347,essv98057,essv98467 M 51 3 0 "" 22170,22259,22352 nsv525221 17 18765277 18781158 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701307 S 2026 1 0 "" nsv457699 17 18771012 18831487 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534832 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00582 dgv933e1 17 18771341 19132640 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv23538,essv21296,essv23859,essv5298,essv8828,essv10449,essv18183,essv2983,essv11904,essv2610,essv11992,essv2477,essv909,essv5564,essv22561,essv8759,essv5216,essv9782,essv4193,essv8311,essv8237,essv9470,essv21053,essv12841,essv6835,essv566,essv6167,essv6582,essv22432,essv16518,essv5161,essv6720,essv6763,essv3876,essv5031,essv15224,essv14795,essv16013,essv4290,essv19659,essv8132,essv13165,essv3740,essv7700,essv7355,essv10256,essv11581,essv2885,essv13661,essv22684,essv6878,essv19211,esv448,essv5754,essv9370,essv13759,essv17104,essv19924,essv7185,essv14078,essv13023,essv9645,essv14299,essv6983,essv17618,essv21987,essv17192,essv9714,essv7563,essv12741,essv2312,essv1589,essv3982,essv17887,essv7817,essv3360,essv8443,essv240,essv2048,essv1202,essv11620,essv1384,essv5340,essv437,essv4166,essv17532,essv6327,essv2228,essv1156,essv9153,essv2647,essv10356,essv22294,essv168,essv14599,essv22437,essv318 M 271 0 0 "" NA06985,NA06991,NA06993,NA07022,NA07348,NA10838,NA10855,NA10861,NA11995,NA12003,NA12057,NA12264,NA12752,NA12753,NA12761,NA12762,NA12813,NA18501,NA18502,NA18506,NA18508,NA18515,NA18516,NA18517,NA18526,NA18529,NA18532,NA18545,NA18547,NA18555,NA18558,NA18562,NA18563,NA18564,NA18570,NA18576,NA18579,NA18593,NA18603,NA18605,NA18608,NA18609,NA18611,NA18612,NA18621,NA18624,NA18633,NA18853,NA18859,NA18860,NA18861,NA18863,NA18913,NA18914,NA18940,NA18942,NA18945,NA18948,NA18949,NA18951,NA18952,NA18953,NA18960,NA18961,NA18964,NA18967,NA18968,NA18970,NA18971,NA18981,NA18990,NA18994,NA18998,NA18999,NA19000,NA19007,NA19092,NA19093,NA19094,NA19102,NA19103,NA19116,NA19119,NA19120,NA19141,NA19152,NA19153,NA19154,NA19159,NA19171,NA19172,NA19173,NA19194,NA19206,NA19208,NA19210 nsv7291 17 18857731 19080546 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9542,nssv2166 M 9 0 0 "" NA18507,NA18555 nsv511054 17 18897287 18953384 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624351 S 4 0 0 "" NA18994 nsv2001 17 18915293 19112404 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5646,nssv10113,nssv1357 M 9 0 3 "" NA18956,NA19129,NA19240 nsv833393 17 18990988 19205701 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453161,nssv1453162,nssv1453160 M 95 2 1 "" dgv934e1 17 19426327 19504358 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv8668,essv8036,essv9269,essv13280,esv1057 M 271 0 0 "" NA19101,NA19103,NA19137,NA19201 dgv51n17 17 19429443 19486426 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437815,nsv437816 M 60 0 2 "" NA19103,NA19139 nsv521483 17 19434770 19435348 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698094 S 2026 0 1 "" nsv528606 17 19434770 19436070 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705232 S 2026 0 1 "" nsv817754 17 19434770 19436070 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416194,nssv1416205 M 112 0 2 "" NA19140,NA19142 nsv817755 17 19434770 19458360 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416977 S 112 0 1 "" NA19137 nsv9505 17 19434778 19436334 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23801 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18552 nsv442739 17 19440328 19479039 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv9506 17 19443277 19450888 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26688 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18972 nsv516254 17 19456287 19458360 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv685813,nssv654610,nssv691848,nssv689485,nssv667086,nssv660271,nssv662696,nssv676078,nssv691379,nssv673965,nssv676904,nssv687445 M 2026 0 12 "" dgv362n27 17 19456287 19478062 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv457702,nsv457703,nsv457701 M 1557 0 3 "" HGDP00459,HGDP00470,HGDP01387 nsv526290 17 19553949 19592074 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702571 S 2026 0 1 "" nsv457704 17 19561069 19604339 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534836 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00961 nsv112170 17 19596078 19602940 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130748 M 24 "" nsv510435 17 19661548 19667548 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622272,nssv618425 M 4 0 2 "" CHM,NA10860 nsv2002 17 19689156 19704946 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2962 S 9 1 0 "" NA18555 nsv518888 17 19730045 19744839 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694285 S 2026 1 0 "" nsv833394 17 19768306 19940169 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453163 S 95 1 0 "" nsv507837 17 19776000 19782000 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623222 S 4 1 0 "" NA18994 nsv833395 17 19910551 20064676 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453164 S 95 0 1 "" nsv833396 17 19969775 20091400 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453165 S 95 1 0 "" nsv2003 17 19986898 20031245 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2167 S 9 0 1 "" NA18555 nsv520772 17 20125093 20463036 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697601 S 2026 0 1 "" nsv521025 17 20138616 20455513 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697741 S 2026 1 0 "" esv32786 17 20160026 20234600 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101550,essv97608,essv93867,essv100659,essv96782,essv101100,essv95168,essv94673,essv94027,essv96931,essv97925,essv95469,essv93069,essv95340,essv97401,essv101693,essv95900,essv94534,essv99065,essv92898,essv92809,essv93734,essv96129,essv96705,essv96009,essv93576,essv93307,essv94916,essv92602,essv98022,essv96437,essv97783,essv100176,essv100620,essv100301,essv98399,essv96336 M 51 1 36 "" 21603,21616,21634,21656,21659,21693,21721,21791,21802,21817,21837,21847,21863,21872,21879,21909,21911,21932,21938,21939,21944,21972,22007,22011,22127,22128,22170,22231,22233,22259,22261,22278,22286,22298,22300,22352,22371 nsv471495 17 20162001 20404817 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv547829,nssv547830,nssv547828 M 3 "" nsv469852 17 20185619 20373865 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649873 M 265 0 0 Samples from several populations that are part of the HapMap project. "" nsv833397 17 20185620 20373865 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453172,nssv1453171,nssv1453168,nssv1453166,nssv1453167,nssv1453170,nssv1453169 M 95 0 7 "" nsv2004 17 20209466 20241469 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6707 S 9 1 0 "" NA12156 dgv935e1 17 20227887 20422653 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv18225,essv14308,essv15114,essv2227 M 271 0 0 "" NA12057,NA18960,NA19129,NA19194 dgv936e1 17 20227887 20640432 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv442,essv2070 M 271 0 0 "" NA18949 nsv833398 17 20236818 20342622 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453176,nssv1453190,nssv1453182,nssv1453174,nssv1453173,nssv1453175,nssv1453177,nssv1453178,nssv1453181,nssv1453179,nssv1453184,nssv1453180,nssv1453183,nssv1453189,nssv1453185,nssv1453188,nssv1453187,nssv1453186,nssv1453191,nssv1453192,nssv1453195,nssv1453193,nssv1453194 M 95 0 23 "" nsv2005 17 20238037 20282814 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7314 S 9 0 1 "" NA12156 nsv833399 17 20282299 20448380 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453204,nssv1453212,nssv1453209,nssv1453208,nssv1453200,nssv1453213,nssv1453203,nssv1453214,nssv1453205,nssv1453215,nssv1453207,nssv1453196,nssv1453202,nssv1453216,nssv1453211,nssv1453206,nssv1453198,nssv1453201,nssv1453210,nssv1453197,nssv1453199 M 95 0 21 "" nsv9507 17 20286103 20373065 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26096,nssv25696,nssv20830,nssv26077,nssv27193,nssv23356,nssv24029,nssv23511,nssv22282,nssv23749,nssv24825,nssv25519,nssv20825,nssv24705,nssv26908,nssv26837,nssv24361,nssv22252,nssv24205,nssv22947,nssv23539,nssv24979,nssv21341,nssv25674,nssv23414,nssv23607,nssv21049,nssv26699,nssv26818,nssv23722,nssv24800,nssv23828,nssv23846,nssv22915,nssv23328,nssv23873,nssv24057,nssv24030,nssv26807,nssv25029,nssv24387,nssv25496,nssv22878,nssv22976,nssv24179,nssv26115,nssv26740,nssv25004 M 31 19 25 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10847,NA10863,NA11830,NA12155,NA12740,NA12802,NA12872,NA18504,NA18517,NA18537,NA18552,NA18563,NA18564,NA18572,NA18853,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19144,NA19173,NA19240 nsv471392 17 20293768 20311440 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548150,nssv548151,nssv548152 M 3 "" essv13903 17 20380658 20640432 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18854 nsv9508 17 20380721 20398768 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27203,nssv26751,nssv23005,nssv26829,nssv28179 M 31 3 2 Samples from several populations that are part of the HapMap project. "" NA10863,NA18860,NA18972,NA19132,NA19221 nsv510703 17 20382145 20508829 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618942 S 4 0 1 "" NA10860 esv2751619 17 20403500 20854748 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6981839,essv6981838,essv6985677 M 771 1 0 "" BEC_492 nsv457705 17 20424474 20468310 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534837 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00208 nsv833400 17 20438273 20590250 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453218,nssv1453217 M 95 0 2 "" esv33952 17 20458283 20458705 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93199 S 51 1 0 "" 22170 nsv469647 17 20492845 20692330 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649574 M 265 0 0 Samples from several populations that are part of the HapMap project. "" nsv9509 17 20541489 20547490 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24850,nssv27213,nssv25748 M 31 3 0 Samples from several populations that are part of the HapMap project. "" NA18860,NA19173,NA19240 nsv9510 17 20571124 20579369 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23033,nssv25054,nssv23442,nssv25770,nssv27223 M 31 4 1 Samples from several populations that are part of the HapMap project. "" NA10863,NA18853,NA18860,NA19144,NA19240 nsv9511 17 20620424 20629391 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23900 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA10839 nsv9512 17 20643647 20649720 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25792,nssv23470,nssv23091,nssv25079,nssv27233 M 31 4 1 Samples from several populations that are part of the HapMap project. "" NA10863,NA18853,NA18860,NA19144,NA19240 esv32971 17 20644164 20646285 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101478,essv95061,essv100480 M 51 0 3 "" 21603,21721,22298 nsv457706 17 20755358 20812923 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534838 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00099 nsv527161 17 20755358 20812923 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703555 S 2026 1 0 "" nsv2006 17 20787355 20833322 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6708 S 9 0 1 "" NA12156 dgv937e1 17 21191534 22014559 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv556,essv2199 M 271 0 0 "" NA18960 dgv363n27 17 21196002 21377174 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv457710,nsv457708,nsv457711 M 1557 3 0 "" HGDP00800,HGDP01099,HGDP01166 nsv2007 17 21200102 21201525 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4255 S 9 1 0 "" NA12878 nsv457709 17 21202153 21243600 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534841 S 1557 1 0 "" 1780854462_A nsv526270 17 21224816 21233445 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702544 S 2026 0 1 "" esv34477 17 21242033 21449435 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6980140,essv6987015,essv6980139 M 771 1 0 "" NA18960 essv3908 17 21246313 21641572 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18960 esv33687 17 21257924 21260682 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv96670 S 51 1 0 "" 22011 nsv112112 17 21261871 21263413 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130690 M 24 "" nsv2008 17 21270135 21289534 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2168 S 9 1 0 "" NA18555 esv32532 17 21283925 21471926 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101173 S 51 0 1 "" 21618 esv2751620 17 21308497 21459693 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6989311,essv6982537 M 771 0 1 "" BEC_565 nsv9514 17 21310379 21316114 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24875,nssv28181,nssv25104 M 31 0 3 Samples from several populations that are part of the HapMap project. "" NA19144,NA19173,NA19221 nsv517456 17 21314071 21430683 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv652509,nssv662320,nssv696516,nssv652066,nssv679358,nssv654861,nssv675465,nssv652958,nssv681830,nssv690069,nssv672048,nssv673947 M 2026 5 7 "" nsv817756 17 21314071 21430683 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417480 S 112 1 0 "" NA18960 nsv833401 17 21324678 21476421 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453220,nssv1453219 M 95 2 0 "" nsv2009 17 21345725 21385241 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7315 S 9 0 1 "" NA12156 nsv9515 17 21355507 21357470 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28213 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19221 nsv9516 17 21367333 21368822 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24056 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18980 nsv525468 17 21377174 21641854 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701596 S 2026 0 1 "" nsv9517 17 21386258 21390129 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26134,nssv26919,nssv23119 M 31 0 3 Samples from several populations that are part of the HapMap project. "" NA10863,NA18504,NA18517 nsv9518 17 21410935 21418923 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27243,nssv26906,nssv24413,nssv24930,nssv23927,nssv28215 M 31 5 1 Samples from several populations that are part of the HapMap project. "" NA10839,NA12740,NA18502,NA18860,NA19173,NA19221 nsv9519 17 21423419 21424656 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26917,nssv24955 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18502,NA19173 esv2751621 17 21437192 22069633 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6987620,essv6984551,essv6984552,essv6984553,essv6987621 M 771 1 0 "" BEC_718 nsv516664 17 21480206 22166482 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv670000,nssv694904,nssv678457 M 2026 2 1 "" nsv9520 17 21617211 21629188 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24731 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA11830 essv4843 17 21624144 21841587 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18540 essv886 17 21624144 21939036 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19000 nsv833402 17 21625568 21817779 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453221 S 95 0 1 "" dgv364n27 17 21628545 22166482 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv457713,nsv457712,nsv457714 M 1557 3 0 "" HGDP00290,HGDP00298,HGDP00302 esv2751622 17 21641572 22069633 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6983317,essv6988654,essv6983319,essv6983318 M 771 1 0 "" BEC_637 nsv457715 17 21654390 21954150 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534847 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00264 nsv9521 17 21681992 21723721 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26762 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18972 nsv817757 17 21688485 21709366 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417453 S 112 0 1 "" NA18953 nsv833404 17 21718878 21834063 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453222,nssv1453226,nssv1453229,nssv1453223,nssv1453225,nssv1453224,nssv1453227,nssv1453228,nssv1453230,nssv1453236,nssv1453233,nssv1453231,nssv1453232,nssv1453235,nssv1453234 M 95 0 15 "" nsv833405 17 21733030 21841527 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453238,nssv1453237 M 95 1 1 "" dgv938e1 17 21733030 21841587 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv14312,essv8750,essv10318,essv18697 M 271 0 0 "" NA12874,NA18506,NA19092,NA19194 dgv939e1 17 21733030 22014559 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv9915,essv8489,essv12303,essv16526,essv14610,essv12807,essv5287,essv15256,essv16671,essv17027,essv11495,essv12693,essv11124,essv12999,essv22901,essv25019,essv9132,essv11029,essv17200,essv3801,essv14704,essv224,essv16048,essv11954,essv22235,essv16400 M 271 0 0 "" NA10839,NA12044,NA12760,NA18500,NA18501,NA18502,NA18516,NA18624,NA18859,NA18860,NA18943,NA18948,NA19093,NA19094,NA19120,NA19138,NA19139,NA19142,NA19143,NA19144,NA19145,NA19159,NA19171,NA19173,NA19210,NA19211 nsv9522 17 21742564 21744586 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26928 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18502 nsv9523 17 21748059 21755923 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28217 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19221 dgv940e1 17 21798167 21939036 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv10000,essv15321 M 271 0 0 "" NA18862,NA19099 nsv2011 17 21817636 21843897 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10114,nssv9543,nssv10115,nssv9544,nssv2169,nssv1360,nssv1359,nssv5648,nssv6713,nssv6712,nssv9322,nssv9323,nssv10971,nssv10970,nssv2170,nssv5647,nssv4258,nssv6709,nssv4257 M 9 9 0 "" NA12156,NA12878,NA15510,NA18507,NA18517,NA18555,NA18956,NA19129,NA19240 nsv158 17 21818891 21827577 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv158 S 1 1 0 "" NA15510 nsv9525 17 21824915 21842352 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26930,nssv28219,nssv24757,nssv24980,nssv25129,nssv22312,nssv27253,nssv26939,nssv22907,nssv25542,nssv24083,nssv23954,nssv22944,nssv24439,nssv21109 M 31 13 2 Samples from several populations that are part of the HapMap project. "" NA07029,NA10839,NA11830,NA12155,NA12740,NA18502,NA18517,NA18572,NA18860,NA18942,NA18975,NA18980,NA19144,NA19173,NA19221 nsv159 17 21828960 21832872 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv159 S 1 1 0 "" NA15510 nsv457716 17 21833397 21992219 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534848 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01053 dgv941e1 17 21850381 22014559 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv16130,essv20172,essv9226,essv825,essv10923,essv8808,essv10433,essv8419,essv20240,essv11195,essv250,essv20789,essv3016,essv19556,essv11681,essv19616,essv10347,essv4007,essv7105,essv24773,essv9999,essv2461,essv15888,essv4732,essv7547,essv4452,essv20370,essv16439,essv7814,essv21758,essv20333,essv23599,essv6718,essv1259,essv19774,essv5036,essv7425,essv23662,essv5383,essv11823,essv16628,essv2331,essv4408,essv15048,essv14533,essv14371,essv5245,essv9942,essv5194,essv16535,essv20054,essv4221,essv18586,essv4075,essv19459,essv16852,essv19226,essv20925,essv13460,essv4967,essv13062,essv9373,essv7029,essv15611,essv13842,essv24511,essv11521,essv11048,essv23063,essv19935,essv8371,essv9418,essv14195,essv23943,essv12998,essv24823,essv18151,essv9806,essv21991,essv15617,essv18317,essv17213,essv9725,essv5511,essv12356,essv11857,essv12497,essv3402,essv12220,essv13551,essv24128,essv13621,essv12646,essv464,essv2846,essv7727,essv6348,essv22333,essv2289,essv15528,essv346,essv3287 M 271 0 0 "" NA06985,NA07000,NA07048,NA10830,NA10835,NA10838,NA10846,NA10847,NA10860,NA10863,NA11832,NA11840,NA11993,NA11995,NA12006,NA12144,NA12146,NA12155,NA12234,NA12236,NA12239,NA12801,NA12802,NA12812,NA12813,NA12814,NA12864,NA18500,NA18505,NA18506,NA18508,NA18515,NA18516,NA18521,NA18537,NA18545,NA18552,NA18558,NA18563,NA18573,NA18576,NA18603,NA18608,NA18609,NA18611,NA18612,NA18620,NA18623,NA18624,NA18632,NA18633,NA18635,NA18637,NA18852,NA18853,NA18854,NA18858,NA18859,NA18863,NA18912,NA18913,NA18940,NA18945,NA18948,NA18952,NA18953,NA18966,NA18970,NA18971,NA18972,NA18973,NA18981,NA18995,NA18999,NA19099,NA19100,NA19101,NA19127,NA19128,NA19129,NA19137,NA19138,NA19139,NA19140,NA19142,NA19143,NA19145,NA19154,NA19160,NA19171,NA19173,NA19192,NA19194,NA19202,NA19205,NA19207,NA19208,NA19209,NA19210,NA19211,NA19221,NA19223 nsv9526 17 21940656 21955869 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21371,nssv23635,nssv23567,nssv26153,nssv23147,nssv24465,nssv22936,nssv26941,nssv26773,nssv26950,nssv23498,nssv21139,nssv25814,nssv25565,nssv23855,nssv20860,nssv22342,nssv24231,nssv27263,nssv20855,nssv24782,nssv24011,nssv25005,nssv22973,nssv25154 M 31 0 25 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10847,NA10863,NA11830,NA12155,NA12740,NA12802,NA12872,NA18502,NA18504,NA18517,NA18537,NA18552,NA18563,NA18572,NA18853,NA18860,NA18942,NA18972,NA18975,NA19144,NA19173,NA19240 nsv9527 17 21985012 21990181 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25588 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA12155 nsv833406 17 22001112 22187001 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453239 S 95 0 1 "" essv10573 17 22045526 22170456 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19240 dgv942e1 17 22045526 22465691 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv260,essv15266,essv14099,essv9706 M 271 0 0 "" NA18861,NA18913,NA19094 nsv9528 17 22080287 22117139 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26952,nssv24257 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18517,NA18537 nsv9529 17 22129948 22143295 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25836 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19240 nsv833407 17 22320285 22486425 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453240 S 95 1 0 "" nsv9530 17 22368576 22375657 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26840 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19132 nsv523602 17 22412403 22434944 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699395 S 2026 0 1 "" nsv2012 17 22425988 22458455 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5649 S 9 1 0 "" NA19129 nsv9531 17 22433338 22442818 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28221 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19221 nsv510436 17 22435078 22441078 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621445,nssv624186 M 4 0 2 "" NA15510,NA18994 nsv510704 17 22545873 22575982 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620097 S 4 0 1 "" NA15510 nsv2013 17 22681485 22716785 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1361 S 9 1 0 "" NA19240 nsv520301 17 22683415 22684316 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv662654,nssv682149 M 2026 0 2 "" nsv2014 17 22743091 22788343 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7316 S 9 0 1 "" NA12156 nsv442414 17 22768399 22781620 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" esv2422193 17 22831080 22974827 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161422 S 181 1 0 "" ND04019 dgv943e1 17 22902614 23201246 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv8851,essv15076,essv9035,esv466,essv9353,essv9160,essv9233 M 271 0 0 "" NA18508,NA18853,NA18860,NA19128,NA19129,NA19132 nsv9532 17 22996146 23031188 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24491,nssv28223,nssv26962 M 31 3 0 Samples from several populations that are part of the HapMap project. "" NA12740,NA18517,NA19221 nsv517874 17 22998672 23095936 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694175 S 2026 1 0 "" nsv9533 17 23101223 23129833 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28225,nssv25611,nssv25857 M 31 3 0 Samples from several populations that are part of the HapMap project. "" NA12155,NA19221,NA19240 nsv2015 17 23238049 23282864 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7317 S 9 0 1 "" NA12156 nsv112303 17 23272972 23274734 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130881 M 24 "" nsv2016 17 23447841 23492790 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7318 S 9 0 1 "" NA12156 nsv522349 17 23487016 23509196 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695129 S 2026 1 0 "" nsv519330 17 23634795 23654606 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696795 S 2026 1 0 "" nsv519388 17 23654606 23731073 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv655807,nssv673652 M 2026 0 2 "" nsv2017 17 23676764 23708866 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5650 S 9 1 0 "" NA19129 nsv2018 17 23773905 23820636 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6714 S 9 0 1 "" NA12156 nsv482200 17 23959109 23965338 CNV Loss Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558561 S 1 0 1 "" KB1 nsv2019 17 24124073 24162624 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2963,nssv7319 M 9 2 0 "" NA12156,NA18555 nsv457719 17 24218760 24365902 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534850 S 1557 0 1 "" NINDS_71 nsv833408 17 24264614 24456594 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453241 S 95 0 1 "" nsv2020 17 24519305 24564517 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7320 S 9 0 1 "" NA12156 nsv2022 17 24560331 24595080 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4259 S 9 1 0 "" NA12878 nsv833409 17 24816790 25006951 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453242 S 95 1 0 "" nsv521557 17 24914112 24946401 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694460 S 2026 0 1 "" nsv526524 17 24933478 24935683 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702836 S 2026 0 1 "" nsv833410 17 24958227 25127880 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453243 S 95 0 1 "" nsv442415 17 25204962 25206809 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv507838 17 25227543 25233543 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620614,nssv623223 M 4 2 0 "" NA15510,NA18994 nsv112489 17 25246777 25246865 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv131067 M 24 "" nsv112136 17 25495407 25498957 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130714 M 24 "" nsv2023 17 25596932 25611165 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2171 S 9 1 0 "" NA18555 nsv2024 17 25698623 25722559 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9545 S 9 1 0 "" NA18507 nsv515870 17 25783161 26024145 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv665095,nssv678369,nssv663780 M 2026 3 0 "" esv32561 17 25901604 25922975 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99794 S 51 1 0 "" 22086 nsv471394 17 25910710 25914633 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548153,nssv548155,nssv548154 M 3 "" nsv7292 17 25930480 26015476 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10117,nssv10118,nssv5651 M 9 0 0 "" NA18956,NA19129 nsv457720 17 25976412 26373814 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534851 S 1557 0 1 "" 1782681208_A nsv9534 17 25977528 25992480 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23663 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18563 nsv442416 17 26040482 26043732 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv833411 17 26090520 26143514 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453244 S 95 0 1 "" nsv833412 17 26144828 26336083 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453245 S 95 0 1 "" nsv522495 17 26554835 26643116 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705863 S 2026 0 1 "" nsv833413 17 26576214 26749754 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453251,nssv1453250,nssv1453249,nssv1453248,nssv1453246,nssv1453247 M 95 1 5 "" nsv111881 17 26796748 26799536 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130459 M 24 "" nsv522350 17 26808557 26809496 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695130 S 2026 0 1 "" nsv519930 17 26809246 26809496 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv679468,nssv688882,nssv659531,nssv682290,nssv674162,nssv690398 M 2026 0 6 "" nsv527440 17 27069337 27081051 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703881 S 2026 1 0 "" nsv518628 17 27069337 27088333 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696078 S 2026 1 0 "" nsv457721 17 27102830 27140959 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534852 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00752 nsv515651 17 27107800 27123735 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv658670,nssv681526,nssv664252 M 2026 3 0 "" nsv112134 17 27130738 27131656 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130712 M 24 "" dgv944e1 17 27245834 27562095 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv128,essv16086 M 271 0 0 "" NA18501 nsv2025 17 27280859 27323501 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7321 S 9 0 1 "" NA12156 nsv9536 17 27383767 27385918 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20885 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA10847 nsv9537 17 27411281 27439056 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28227 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19221 nsv9538 17 27465328 27471696 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25878,nssv27303 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA18860,NA19240 nsv519839 17 27799874 27853777 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697079 S 2026 0 1 "" nsv833415 17 27961446 28129586 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453252 S 95 1 0 "" nsv833416 17 28028294 28214642 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453253 S 95 1 0 "" nsv507839 17 28154479 28160479 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617918 S 4 1 0 "" CHM nsv510705 17 28192649 28374212 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620098 S 4 0 1 "" NA15510 nsv833417 17 28194929 28369711 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453254 S 95 1 0 "" nsv111781 17 28357165 28357228 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130359 M 24 "" nsv2026 17 28366349 28411165 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7322 S 9 0 1 "" NA12156 nsv457722 17 28515620 28533971 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534853 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01163 nsv833418 17 28573710 28714625 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453255 S 95 1 0 "" nsv525886 17 28595941 28596020 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702087 S 2026 0 1 "" nsv833419 17 28624283 28648111 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453256 S 95 1 0 "" nsv2027 17 28649259 28681300 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6715 S 9 1 0 "" NA12156 nsv833420 17 28664889 28816126 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453257 S 95 1 0 "" nsv9539 17 28709546 28949830 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26960 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18502 nsv521841 17 28757874 28944267 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694613 S 2026 0 1 "" nsv526348 17 28768584 28770788 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702640 S 2026 0 1 "" nsv510706 17 28788955 28947509 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620099 S 4 0 1 "" NA15510 nsv112442 17 28815651 28815704 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv131020 M 24 "" nsv471803 17 28821970 28822139 CNV Loss Hinds et al 2006 16327809 Oligo_aCGH,PCR Custom Perlegen arrays nssv646084 M 0.196 95 "" nsv527765 17 28842475 28850154 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704254 S 2026 0 1 "" nsv833421 17 28871846 29014335 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453259,nssv1453258 M 95 2 0 "" nsv519297 17 28991792 29960126 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696774 S 2026 1 0 "" nsv517423 17 29128788 29849374 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv665223,nssv657841,nssv681994,nssv679296,nssv696846,nssv651980,nssv660932,nssv664310,nssv680227,nssv660015,nssv655808,nssv655664,nssv696217,nssv703026 M 2026 2 12 "" nsv833422 17 29170118 29347573 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453260 S 95 1 0 "" nsv2028 17 29255449 29287827 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4260 S 9 1 0 "" NA12878 nsv2029 17 29760047 29793170 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7323 S 9 1 0 "" NA12156 nsv2030 17 29863677 29896552 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6716 S 9 1 0 "" NA12156 nsv520285 17 29866716 29869239 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv687692,nssv662358 M 2026 0 2 "" nsv519238 17 29866716 29873642 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696729 S 2026 0 1 "" esv33292 17 29920449 29935983 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99855 S 51 1 0 "" 22086 nsv519348 17 29923365 29924950 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv655526,nssv673897,nssv682702,nssv690655,nssv681216,nssv661605,nssv693901 M 2026 0 7 "" nsv833423 17 29982713 30132270 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453261 S 95 0 1 "" nsv523302 17 29991897 30015559 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699042 S 2026 0 1 "" nsv2031 17 30094460 30137450 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7324 S 9 0 1 "" NA12156 nsv2033 17 30152074 30170521 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2964 S 9 1 0 "" NA18555 nsv524742 17 30154422 30157201 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700733 S 2026 0 1 "" nsv2034 17 30185940 30216350 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10119 S 9 1 0 "" NA18956 nsv457723 17 30194596 30241315 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534854 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00864 nsv112155 17 30269940 30269940 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130733 M 24 "" nsv526685 17 30279875 30310777 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703018 S 2026 1 0 "" nsv2035 17 30353734 30398962 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7325 S 9 0 1 "" NA12156 nsv2036 17 30475909 30494272 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2172 S 9 1 0 "" NA18555 nsv2037 17 30538437 30564848 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7326 S 9 0 1 "" NA12156 esv2422399 17 30563353 30642714 CNV Deletion Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161457 S 181 0 1 "" ND04296 nsv457724 17 30633360 30715522 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534855 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00667 nsv515566 17 30688931 30792312 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv685161,nssv679424,nssv663924,nssv663544,nssv682841,nssv690238,nssv655753,nssv705635,nssv686085,nssv691329,nssv667652,nssv687242,nssv681737 M 2026 1 12 "" dgv365n27 17 30708148 30791060 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv457730,nsv457727 M 1557 0 2 "" 1780854176_A,HGDP00161 nsv457728 17 30708148 30792312 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534857 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01189 nsv519981 17 30865850 30888592 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697161 S 2026 1 0 "" nsv2038 17 30920749 30949928 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5653 S 9 1 0 "" NA19129 nsv438273 17 31064899 31067497 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470682,nssv470677,nssv470673,nssv470672,nssv470679,nssv470675,nssv470678,nssv470680,nssv470681,nssv470676,nssv470671,nssv470670 M 269 0 11 Samples from several populations that are part of the HapMap project. "" NA18506,NA18507,NA18914,NA19094,NA19130,NA19132,NA19138,NA19161,NA19192,NA19194,NA19210 dgv52n17 17 31066444 31075289 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437818,nsv437817 M 60 0 2 "" NA19132,NA19194 nsv517530 17 31096668 31101541 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704642,nssv652282,nssv687151 M 2026 0 3 "" nsv2039 17 31256143 31283843 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4261 S 9 1 0 "" NA12878 nsv833424 17 31263000 31443589 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453262 S 95 1 0 "" nsv833427 17 31309398 31466733 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453263,nssv1453264 M 95 0 2 "" dgv945e1 17 31309398 31651855 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv3242,essv644,essv2585,essv1018,essv1371,essv3961,essv19433,essv18415,essv3008,essv4117,essv13040,essv7785,essv6326,essv420,essv17766,essv20616,essv2646 M 271 0 0 "" NA07056,NA10831,NA11840,NA12249,NA18542,NA18555,NA18609,NA18852,NA18952,NA18967,NA18970,NA18974,NA18975,NA18981,NA18990,NA19005,NA19007 dgv946e1 17 31309398 32016863 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv3275,essv14393,essv10538,essv4505,essv1913,essv12186,essv16890,essv8474,essv7818,essv86,essv17559,essv2447,essv10446,essv766,essv2542,essv11991,essv1507,essv4836,essv5586,essv11891,essv21303,essv16498,essv3865,essv10024,essv5476,essv9230,essv8219,essv1767,essv16344,essv10892,essv7087,essv11575,essv16037,essv9006,essv2177,essv8151,essv6740,essv12333,essv9639,essv11830,essv15576,essv16730,essv17272,essv17133,essv12695,essv6038,essv15875,essv12818,essv5311,essv10755,essv3115,essv7550,essv1614,essv6140,essv17004,essv8764,essv10209,essv11140,essv14418,essv10326,essv14147,essv4072,essv15005,essv9904,essv11231,essv9382,essv4923,essv15786,essv523,essv13917,esv842,essv6921,essv4286,essv12404,essv13032,essv9113,essv8596,essv17069,essv14090,essv7688,essv14652,essv9807,essv11012,essv8367,essv10826,essv12602,essv18300,essv16749,essv15105,essv9654,essv12734,essv15388,essv2322,essv13153,essv22360,essv5101,essv3381,essv2095,essv14318,essv11919,essv4963,essv3756,essv4777,essv1122,essv11745,essv14881,essv16093,essv12509,essv15526,essv14531 M 271 0 0 "" NA10846,NA10855,NA12762,NA12875,NA18500,NA18501,NA18502,NA18503,NA18504,NA18505,NA18506,NA18507,NA18515,NA18516,NA18517,NA18521,NA18522,NA18523,NA18529,NA18532,NA18537,NA18540,NA18545,NA18552,NA18558,NA18561,NA18562,NA18563,NA18571,NA18577,NA18603,NA18605,NA18620,NA18632,NA18633,NA18635,NA18637,NA18853,NA18854,NA18858,NA18859,NA18860,NA18861,NA18863,NA18870,NA18871,NA18872,NA18913,NA18914,NA18940,NA18942,NA18945,NA18949,NA18956,NA18960,NA18961,NA18964,NA18969,NA18972,NA18976,NA18980,NA18991,NA18994,NA18997,NA18998,NA18999,NA19003,NA19092,NA19093,NA19098,NA19099,NA19100,NA19101,NA19102,NA19116,NA19120,NA19128,NA19129,NA19131,NA19132,NA19137,NA19138,NA19140,NA19141,NA19142,NA19143,NA19144,NA19145,NA19152,NA19171,NA19172,NA19173,NA19193,NA19194,NA19201,NA19202,NA19203,NA19204,NA19205,NA19206,NA19207,NA19209,NA19210,NA19211,NA19221,NA19223,NA19238,NA19239,NA19240 dgv120e55 17 31396100 31501500 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv34491,esv2751625,esv2751624,esv2751623 M 771 4 0 "" BEC_379,BEC_397,BEC_529,NA18558 dgv947e1 17 31401905 31651855 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv831,essv20340,essv8327,essv18450,essv19999,essv24068,essv11420,essv7301 M 271 0 0 "" NA07048,NA10859,NA11831,NA12236,NA18592,NA18857,NA18973,NA19103 dgv948e1 17 31401905 32016863 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv8810,essv11693,essv15929,essv2153,essv5259,essv2795,essv20303,essv191,essv15174,essv14930,essv3513,essv22807,essv20721,essv3163,essv2361,essv21345,essv12080,essv14240,essv23184,essv18607,essv14830,essv13712,essv15433,essv912,essv24009,essv13989,essv3582,essv21753,essv13318,essv8589,essv8674,essv18803,essv20408,essv8968,essv7884,essv4528,essv12009,essv299,essv12024,essv1064,essv5038,essv5790,essv7636,essv17352,essv4419,essv7971,essv7519,essv8994,essv988,essv21018,essv8958,essv15977,essv18832,essv9447,essv13305,essv6787,essv13456,essv5431,essv19674,essv25034,essv13826,essv23471,essv23081,essv21866,essv22493,essv7369,essv8046,essv7662,essv13107,essv10119,essv16581,essv13574,essv9535,essv15317,essv22028,essv18100,essv12938,essv7437,essv14818,essv12943,essv25024,essv8014,essv9514,essv1804,essv13385,essv8903,essv10398,essv15637,essv6849,essv16261,essv11073,essv709,essv17314,essv22751,essv751,essv2721,essv20941,essv6261,essv22701,essv212,essv3436,essv4113,essv14746,essv3922,essv23578,essv6934,essv2297,essv1706,essv23434,essv3940,essv1288,essv2952 M 271 0 0 "" NA06991,NA07019,NA07034,NA10830,NA10839,NA10854,NA11839,NA11882,NA11993,NA12004,NA12006,NA12144,NA12156,NA12234,NA12239,NA12248,NA12264,NA12716,NA12751,NA12752,NA12753,NA12801,NA12812,NA12815,NA12878,NA18507,NA18508,NA18515,NA18517,NA18521,NA18529,NA18532,NA18542,NA18547,NA18558,NA18566,NA18570,NA18573,NA18576,NA18582,NA18594,NA18608,NA18624,NA18632,NA18636,NA18853,NA18856,NA18859,NA18860,NA18861,NA18862,NA18870,NA18871,NA18872,NA18912,NA18940,NA18944,NA18948,NA18956,NA18960,NA18964,NA18966,NA18968,NA18970,NA18971,NA18972,NA18978,NA18987,NA18990,NA18994,NA18995,NA18999,NA19000,NA19003,NA19012,NA19094,NA19098,NA19099,NA19100,NA19101,NA19102,NA19103,NA19116,NA19119,NA19130,NA19132,NA19138,NA19139,NA19140,NA19141,NA19142,NA19154,NA19159,NA19160,NA19161,NA19171,NA19192,NA19194,NA19200,NA19202,NA19206,NA19208,NA19210,NA19222,NA19240 nsv457733 17 31427152 31460645 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534860 S 1557 1 0 "" 1780862402_A nsv9540 17 31429255 31889661 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23882,nssv21169,nssv25899,nssv26795,nssv23803,nssv22462,nssv23554,nssv28231,nssv23203,nssv25209,nssv26817,nssv24136,nssv23623,nssv25030,nssv24543,nssv26980,nssv28263,nssv20920,nssv23857,nssv21199,nssv24365,nssv21229,nssv20890,nssv26202,nssv25797,nssv23595,nssv25920,nssv27321,nssv25657,nssv26240,nssv24162,nssv24807,nssv25634,nssv25819,nssv26839,nssv22965,nssv24163,nssv26972,nssv24313,nssv24038,nssv24832,nssv25775,nssv26221,nssv21259,nssv25679,nssv23776,nssv25055,nssv23884,nssv22522,nssv23116,nssv22612,nssv26982,nssv26911,nssv22372,nssv26990,nssv23030,nssv23526,nssv23022,nssv24084,nssv24111,nssv23088,nssv24092,nssv24517,nssv25234,nssv25753,nssv24065,nssv27330,nssv23963,nssv23936,nssv27312,nssv26258,nssv23748,nssv24629,nssv25731,nssv24188,nssv22402,nssv24020,nssv24189,nssv22994,nssv24339,nssv23909,nssv24137,nssv26784,nssv23830,nssv23721,nssv26970,nssv22492,nssv23002,nssv24110,nssv23175,nssv22582,nssv26806,nssv28229,nssv22552,nssv26828 M 31 23 6 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10863,NA11830,NA12155,NA12740,NA12802,NA18502,NA18504,NA18517,NA18537,NA18552,NA18563,NA18564,NA18572,NA18853,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19144,NA19173,NA19221,NA19240 essv19054 17 31429427 31501499 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA11830 nsv523265 17 31436315 31444192 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698999 S 2026 1 0 "" dgv178n21 17 31436315 31504639 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv524951,nsv522835 M 2026 0 2 "" nsv471395 17 31439716 31441619 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548158,nssv548157,nssv548159 M 3 "" esv33166 17 31441440 31441586 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99863 S 51 1 0 "" 22086 esv33481 17 31448720 31449893 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101549,essv98840,essv97577,essv95099,essv94670,essv97029,essv97438,essv94497,essv99080,essv99951,essv93346,essv99190,essv97730,essv100207,essv100507,essv100370,essv98433 M 51 0 17 "" 21603,21606,21616,21721,21791,21817,21879,21932,21938,22086,22170,22275,22278,22286,22298,22300,22352 dgv121e55 17 31449476 31501500 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv34841,esv2751650,esv2751659,esv34872,esv2751646,esv2751641,esv2751642,esv2751658,esv2751640,esv2751638,esv35014,esv2751637,esv34761,esv2751661,esv2751653,esv2751628,esv34355,esv2751652,esv2751660,esv34323,esv2751651,esv2751627,esv34755,esv34700,esv34226,esv34314,esv34338,esv34383,esv34514,esv34522,esv34523,esv34529,esv34556,esv34569,esv34602,esv34612,esv34747,esv34759,esv34772,esv34889,esv34894,esv35001,esv35032,esv35093,esv35108,esv34941,esv2751626,esv2751629,esv2751630,esv2751631,esv2751632,esv2751633,esv2751636,esv2751639,esv2751657,esv2751662,esv2751663,esv2751664,esv2751667,esv2751668,esv2751669,esv2751670,esv2751671,esv2751672,esv2751673,esv2751674,esv2751675,esv2751676,esv34598,esv34397 M 771 70 0 "" BEC_11,BEC_16,BEC_301,BEC_304,BEC_307,BEC_353,BEC_366,BEC_373,BEC_386,BEC_387,BEC_402,BEC_428,BEC_434,BEC_448,BEC_451,BEC_513,BEC_543,BEC_563,BEC_571,BEC_584,BEC_656,BEC_713,BEC_714,BEC_716,BEC_730,BEC_738,BEC_776,BEC_793,BEC_806,BEC_826,NA07345,NA10861,NA11995,NA12004,NA12762,NA12874,NA15510,NA18507,NA18515,NA18517,NA18529,NA18547,NA18632,NA18853,NA18854,NA18861,NA18863,NA18870,NA18872,NA18956,NA18960,NA18964,NA18970,NA18972,NA18978,NA19003,NA19100,NA19102,NA19131,NA19194,NA19201,NA19238,SPC_157,SPC_168,SPC_18,SPC_189,SPC_19,SPC_23,SPC_4,SPC_47 dgv949e1 17 31450358 31501499 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv23273,essv2406,essv1298,essv3651,essv1570,essv8502,essv16186,essv10979,essv5759,essv13272,essv12148,essv14910,essv13206,essv13244,essv11608,essv16384,essv7934,essv12063,essv20742,essv10724,essv7902,essv8524,essv16612,essv16573,essv9299,essv6061,essv23737,essv9287,essv12425,essv9857,essv11354,essv14039,essv11315,essv6475,essv11329,essv20543,essv14224,essv13500,essv7492,essv13355,essv18042,essv5874,essv13331,essv9579,essv8550 M 271 0 0 "" NA06993,NA07345,NA07357,NA11995,NA12813,NA18500,NA18501,NA18503,NA18505,NA18506,NA18508,NA18523,NA18540,NA18561,NA18562,NA18603,NA18636,NA18852,NA18854,NA18858,NA18862,NA18863,NA18913,NA18914,NA18976,NA18980,NA18991,NA18997,NA19092,NA19120,NA19128,NA19129,NA19131,NA19137,NA19144,NA19152,NA19159,NA19172,NA19193,NA19201,NA19207,NA19208,NA19209,NA19238,NA19239 dgv122e55 17 31450358 31944821 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv2751654,esv2751655,esv2751634,esv34913,esv2751647,esv2751635,esv2751643,esv2751644,esv2751648,esv2751649,esv2751665,esv2751666,esv2751677,esv2751678,esv2751679,esv2751680 M 771 16 0 "" BEC_383,BEC_539,BEC_588,BEC_593,BEC_603,BEC_606,BEC_630,BEC_660,BEC_661,BEC_673,BEC_694,BEC_783,NA19132,SPC_15,SPC_17,SPC_179 nsv471396 17 31455333 31457127 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548162,nssv548160,nssv548161 M 3 "" nsv517262 17 31456238 31504639 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv658654,nssv654155,nssv686897,nssv670097,nssv652688,nssv667638,nssv699714,nssv665147,nssv665437 M 2026 7 2 "" esv33107 17 31456683 31635490 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101546,essv101468,essv98772,essv97477,essv101266,essv93805,essv100754,essv96781,essv101015,essv95150,essv98225,essv94682,essv94665,essv94012,essv101298,essv94432,essv96880,essv97895,essv95704,essv95425,essv93079,essv95375,essv97451,essv101766,essv95815,essv94527,essv98992,essv92847,essv92804,essv93646,essv96100,essv96608,essv97243,essv98598,essv99970,essv96057,essv93502,essv93216,essv99689,essv94988,essv97990,essv96548,essv99340,essv99231,essv97731,essv97766,essv100267,essv100586,essv100495,essv100435,essv100333,essv99467,essv98398,essv96276,essv94154 M 51 0 49 "" 21603,21606,21616,21618,21634,21656,21659,21693,21721,21772,21791,21802,21805,21808,21817,21837,21841,21847,21863,21872,21879,21909,21911,21932,21938,21939,21944,21972,22007,22011,22075,22085,22086,22127,22128,22170,22217,22231,22259,22261,22275,22278,22286,22298,22300,22335,22352,22371,22394 esv2751645 17 31459600 32155500 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6983560,essv6986457 M 771 1 0 "" BEC_668 esv2751656 17 31460821 31496575 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6987436,essv6988721 M 771 1 0 "" BEC_633 dgv950e1 17 31461042 31494924 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv11397,essv13956 M 271 0 0 "" NA19160,NA19192 nsv442741 17 31461241 31509204 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv433448 17 31462326 31567477 CNV Gain Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463329 S 9 1 0 Samples from several populations that are part of the HapMap project. "" NA18517 nsv817758 17 31469658 31489062 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417591 S 112 1 0 "" NA18972 nsv817759 17 31469658 31504639 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416503,nssv1417104,nssv1416504,nssv1418518,nssv1417717,nssv1418517 M 112 6 0 "" NA18515,NA18517,NA18529,NA18999,NA19193,NA19194 nsv526727 17 31469658 31979521 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703067 S 2026 1 0 "" nsv517865 17 31469658 33323543 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695268 S 2026 1 0 "" nsv817760 17 31487436 31504639 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417941,nssv1415918,nssv1417940,nssv1415916 M 112 4 0 "" NA10861,NA11995,NA18853,NA18854 nsv2040 17 31498593 31642646 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10972,nssv5654,nssv9325 M 9 0 3 "" NA15510,NA18517,NA19129 dgv12n31 17 31505927 31698947 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis nsv471349,nsv471360,nsv471551 M 3 "" dgv951e1 17 31583743 31651855 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv20213,essv3994,essv13757,essv4698,essv24844,essv4152,essv1469,essv2837,essv23814,essv3559,essv22892 M 271 0 0 "" NA07000,NA11832,NA12760,NA12763,NA18555,NA18622,NA18944,NA18953,NA18965,NA18970,NA19153 dgv952e1 17 31583743 31981395 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv18185,essv22105,essv7178,essv4609,essv24732,essv7391,essv4660,essv13635,essv17913,essv19630 M 271 0 0 "" NA10857,NA11829,NA12003,NA12057,NA12155,NA18524,NA18547,NA18594,NA18623,NA19127 nsv511055 17 31598664 31813697 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622419 S 4 0 0 "" NA10860 nsv471397 17 31647958 31649843 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548163,nssv548164 M 3 "" nsv112497 17 31666447 31666499 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv131075 M 24 "" essv6619 17 31799968 31981395 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18621 nsv469796 17 31800001 31931756 CNV Gain Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649817 M 265 6 0 Samples from several populations that are part of the HapMap project. "" nsv471697 17 31800001 32004489 CNV Gain Sharp et al 2005 15918152 BAC_aCGH,FISH Eichler Segmental Duplication BAC array nssv550639,nssv550975,nssv550601,nssv550617,nssv550978,nssv550618,nssv550644,nssv550992,nssv550625,nssv550984,nssv550633,nssv550997,nssv550645,nssv550609,nssv550977,nssv550619,nssv550632,nssv550614,nssv550607,nssv550636,nssv550993,nssv550995,nssv550640,nssv550602,nssv550611,nssv550627,nssv550630,nssv550979,nssv550628,nssv550642,nssv550999,nssv550634,nssv550991,nssv550982,nssv550610,nssv550990,nssv550996,nssv550603,nssv550620,nssv550994,nssv550637,nssv550600,nssv550985,nssv550613,nssv551002,nssv550626,nssv550646,nssv550622,nssv550635,nssv550621,nssv550981,nssv550608,nssv550976,nssv550631,nssv550605,nssv550643,nssv551001,nssv550641,nssv550616,nssv550624,nssv550987,nssv550629,nssv550988,nssv550986,nssv550612,nssv550604,nssv551003,nssv550989,nssv551000,nssv550615,nssv550998,nssv550606,nssv550623,nssv550974,nssv550638,nssv550983,nssv550980 M 48 47 0 "" JK1051,JK1058,JK1061,JK1688,JK776,NA10469,NA10470,NA10471,NA10472,NA10473,NA10492,NA10493,NA10494,NA10495,NA10496,NA10967,NA10969,NA10970,NA10971,NA10976,NA10979,NA11323,NA11521,NA11523,NA11776,NA15724,NA15725,NA15726,NA15727,NA15728,NA15729,NA15730,NA15731,NA15732,NA15733,NA16688,NA16689,NA17014,NA17015,NA17016,NA17017,NA17020,NA17051,NA17052,NA17058,NA17059,P86GA nsv471328 17 31800002 31889187 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv547984,nssv547983,nssv547982 M 3 "" nsv469738 17 31809072 31888836 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649759 M 265 9 2 Samples from several populations that are part of the HapMap project. "" nsv469853 17 31830237 32004489 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649874 M 265 9 1 Samples from several populations that are part of the HapMap project. "" nsv509654 17 31861189 31914932 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619711,nssv623713,nssv621038 M 4 3 0 "" NA10860,NA15510,NA18994 nsv7293 17 31888441 33603080 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1362,nssv6717,nssv10881,nssv1363,nssv1364 M 9 0 0 "" NA12156,NA18956,NA19240 nsv457734 17 31889664 31979521 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534861 S 1557 1 0 "" 1782681378_A nsv516100 17 31889664 31979521 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv686837,nssv693163,nssv672621,nssv666207,nssv676214,nssv688794,nssv673306,nssv654641,nssv667523,nssv679403 M 2026 7 3 "" nsv469760 17 31949258 32114334 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649781 M 265 0 2 Samples from several populations that are part of the HapMap project. "" nsv833428 17 31967087 32017546 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453279,nssv1453266,nssv1453285,nssv1453283,nssv1453284,nssv1453280,nssv1453282,nssv1453278,nssv1453281,nssv1453288,nssv1453286,nssv1453287,nssv1453291,nssv1453290,nssv1453289,nssv1453265,nssv1453277,nssv1453269,nssv1453267,nssv1453268,nssv1453276,nssv1453270,nssv1453273,nssv1453272,nssv1453271,nssv1453275,nssv1453274 M 95 0 27 "" essv9000 17 32018706 32097998 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19194 dgv953e1 17 32018706 32221507 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv873,essv18986 M 271 0 0 "" NA12005 nsv833429 17 32036161 32221507 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453292 S 95 1 0 "" nsv457736 17 32040112 32065330 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534862 S 1557 1 0 "" 1780854556_A dgv954e1 17 32049873 32104672 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv14253,essv12443 M 271 0 0 "" NA19100,NA19152 nsv457737 17 32094404 32128885 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534863 S 1557 0 1 "" 1780854065_A esv33875 17 32094778 32096735 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93298 S 51 1 0 "" 22170 nsv9541 17 32107440 32110588 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26276 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18504 essv13359 17 32210529 32219667 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19159 nsv517793 17 32214552 32215314 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv676581,nssv658820,nssv653281,nssv667678,nssv662143,nssv662044,nssv655549,nssv655809 M 2026 0 8 "" nsv509655 17 32215826 32329405 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619712 S 4 1 0 "" NA10860 dgv49n6 17 32220425 32220492 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv111753,nsv112003 M 24 "" nsv833430 17 32240519 32455752 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453295,nssv1453293,nssv1453294 M 95 2 1 "" nsv528102 17 32274640 32293318 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704643 S 2026 0 1 "" nsv523668 17 32302701 32303842 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699470 S 2026 1 0 "" nsv521763 17 32317613 32320677 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694095 S 2026 1 0 "" nsv527141 17 32320677 32320918 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703529 S 2026 0 1 "" nsv520562 17 32322855 32323630 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697486 S 2026 0 1 "" nsv112350 17 32454901 32454901 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130928 M 24 "" nsv112468 17 32455100 32455100 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv131046 M 24 "" nsv527922 17 32557264 32631402 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704429 S 2026 1 0 "" dgv955e1 17 32642843 32848430 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv396,essv19279 M 271 0 0 "" NA10838 nsv510707 17 32669740 32749856 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618943 S 4 0 1 "" NA10860 esv32692 17 32809213 32832671 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv94239 S 51 0 1 "" 22394 nsv510437 17 32828559 32834559 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618426 S 4 0 1 "" CHM nsv9542 17 32828825 32837243 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24857,nssv25259,nssv23050,nssv24215,nssv22642,nssv23582,nssv23911,nssv23231,nssv24391,nssv25941,nssv23651,nssv23144,nssv27339,nssv21289,nssv23775,nssv28265,nssv24047,nssv24655,nssv26910,nssv27000,nssv26992,nssv21461,nssv24214,nssv24119 M 31 22 2 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10863,NA11830,NA12740,NA12872,NA18502,NA18517,NA18537,NA18552,NA18563,NA18564,NA18572,NA18853,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19144,NA19221,NA19240 dgv14n14 17 32831694 32832761 CNV Loss Cooper et al 2008 18776910 SNP_array nsv433169,nsv433170 M 9 0 2 "" NA12156,NA12878 nsv9543 17 32851118 32857501 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26921,nssv23259 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA10863,NA18972 nsv833431 17 32964856 33160621 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453296 S 95 1 0 "" dgv956e1 17 33140728 33649105 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv24004,essv20435 M 271 0 0 "" NA10830,NA12716 dgv957e1 17 33140728 34010545 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1502,essv14481,essv23356,essv8833,essv5555,essv14586,essv13689,essv16923,essv13940,essv15990,essv14466,essv14283,essv16746,essv16325,esv406,essv13443,essv5230,essv17341,essv24988,essv15362,essv9814,essv19023,essv9735,essv15856,essv12209,essv17802,essv2905,essv1943,essv10352 M 271 0 0 "" NA10831,NA10839,NA12005,NA12750,NA18501,NA18506,NA18508,NA18529,NA18624,NA18854,NA18856,NA18862,NA18863,NA18872,NA18913,NA18953,NA18959,NA18980,NA19093,NA19101,NA19119,NA19144,NA19192,NA19193,NA19194,NA19201,NA19202,NA19223 nsv833432 17 33267468 33427467 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453301,nssv1453300,nssv1453297,nssv1453299,nssv1453298 M 95 2 3 "" nsv9544 17 33288407 33289565 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23610,nssv27348,nssv25992 M 31 3 0 Samples from several populations that are part of the HapMap project. "" NA18853,NA18860,NA19240 dgv958e1 17 33289079 33649105 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv20134,essv22921,essv10885,essv1869,essv18233,essv3550,essv12496,essv20267,essv5210,essv23466,essv4589,essv5048,essv10558,essv1231,essv18133,essv10787,essv7716,essv546,essv6989,essv2460,essv20998,essv23670,essv22133,essv13177,essv9437,essv3164,essv8725,essv6175,essv12608,essv23190,essv11143,essv7768,essv10038,essv13760,essv9880,essv11233,essv7116,essv10467,essv15482,essv20191,essv8167,essv8185,essv8313,essv12781,essv5477,essv8462,essv4149,essv15026,essv7193,essv7800,essv4370,essv10155,essv16480,essv11996,essv4889,essv16094,essv14376,essv9018,essv6771,essv15579,essv5093,essv7522,essv12716,essv12384,essv23833,essv5398,essv11802,essv22357,essv14168,essv13615,essv7327,essv16710,essv21795,essv11003,essv14877,essv11531,essv67,essv3093,essv11677,essv9608,essv18856,essv15718,essv19992,essv6881,essv21291,essv8932,essv9167,essv24370,essv10222,essv4065,essv1600,essv23801,essv5993,essv21812,essv6274,essv4993,essv13038,essv20881,essv24730,essv4284,essv19202,essv9366,essv23027,essv1750,essv7381,essv19665,essv4702,essv17087,essv22509,essv11961,essv11452,essv8385,essv11866,essv5810,essv12993,essv9155,essv16834,essv14133,essv10406,essv4864,essv14985,essv23520,essv10942,essv15664,essv133,essv6572,essv20766,essv4655,essv17193,essv18251,essv15402,essv4809,essv17977,essv2353,essv3345,essv21321,essv14788,essv245,essv20668,essv2093,essv12667,essv16195,essv8630,essv22775,essv776,essv16470,essv13528,essv18440,essv3748,essv1093,essv23579,essv17258,essv17433,essv19608,essv2266,essv23414,essv17544,essv18619,essv3950 M 271 0 0 "" NA06991,NA06993,NA07019,NA07022,NA07034,NA07048,NA07345,NA10846,NA10854,NA10855,NA10857,NA10863,NA11829,NA11831,NA11832,NA11839,NA11882,NA11993,NA12003,NA12006,NA12043,NA12057,NA12144,NA12146,NA12155,NA12156,NA12234,NA12239,NA12264,NA12707,NA12751,NA12760,NA12762,NA12763,NA12801,NA12812,NA12865,NA12875,NA12878,NA12892,NA18500,NA18502,NA18503,NA18505,NA18507,NA18515,NA18516,NA18517,NA18521,NA18522,NA18523,NA18524,NA18532,NA18537,NA18540,NA18542,NA18545,NA18547,NA18555,NA18558,NA18561,NA18562,NA18563,NA18566,NA18570,NA18571,NA18573,NA18576,NA18577,NA18594,NA18603,NA18605,NA18611,NA18612,NA18620,NA18621,NA18622,NA18623,NA18632,NA18633,NA18635,NA18636,NA18637,NA18852,NA18853,NA18857,NA18858,NA18859,NA18860,NA18861,NA18870,NA18871,NA18912,NA18914,NA18940,NA18942,NA18945,NA18948,NA18949,NA18956,NA18961,NA18964,NA18965,NA18966,NA18968,NA18969,NA18970,NA18976,NA18991,NA18995,NA18997,NA18998,NA18999,NA19012,NA19092,NA19098,NA19099,NA19100,NA19102,NA19103,NA19116,NA19120,NA19127,NA19128,NA19129,NA19130,NA19131,NA19132,NA19137,NA19139,NA19140,NA19141,NA19142,NA19143,NA19145,NA19152,NA19153,NA19154,NA19159,NA19160,NA19161,NA19171,NA19172,NA19173,NA19200,NA19203,NA19204,NA19205,NA19206,NA19207,NA19208,NA19209,NA19210,NA19211,NA19221,NA19222,NA19238,NA19239,NA19240 nsv9545 17 33307576 33311565 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24241,nssv26932 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA18972,NA19007 nsv9548 17 33323841 33661652 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23220,nssv23829,nssv24417,nssv23724,nssv22876,nssv26327,nssv23856,nssv22701,nssv24266,nssv27040,nssv27004,nssv23666,nssv21469,nssv23315,nssv24240,nssv26984,nssv26052,nssv23164,nssv22847,nssv23938,nssv24267,nssv26954,nssv24323,nssv23965,nssv27060,nssv26012,nssv25861,nssv27052,nssv27042,nssv26360,nssv23172,nssv23192,nssv25359,nssv23276,nssv23248,nssv27357,nssv24101,nssv20915,nssv24349,nssv24374,nssv27002,nssv24469,nssv26310,nssv26994,nssv25284,nssv23883,nssv22789,nssv23108,nssv21379,nssv21319,nssv23136,nssv25309,nssv28269,nssv21349,nssv26933,nssv25130,nssv24074,nssv24145,nssv28267,nssv26943,nssv27050,nssv24171,nssv24495,nssv26922,nssv25334,nssv23638,nssv26293,nssv26344,nssv22672,nssv24348,nssv22818,nssv24443,nssv25080,nssv28271,nssv27366,nssv20945,nssv25882,nssv23751,nssv26964,nssv24322,nssv22730,nssv23802,nssv26406,nssv25105,nssv25840,nssv26032,nssv26974,nssv24197,nssv23287 M 31 18 18 Samples from several populations that are part of the HapMap project. "" NA07029,NA10839,NA10847,NA10863,NA12155,NA18502,NA18504,NA18517,NA18537,NA18552,NA18563,NA18564,NA18572,NA18853,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19144,NA19173,NA19221,NA19240 nsv471329 17 33323961 33428689 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv547987,nssv547986,nssv547985 M 3 "" dgv39n68 17 33369043 33427467 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH nsv833434,nsv833433 M 95 13 49 "" nsv510708 17 33401558 33612861 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620100,nssv622716,nssv618944 M 4 0 3 "" NA10860,NA15510,NA18994 nsv821686 17 33425841 33658842 CNV Gain Sebat_et_al_2004 15273396 ROMA Custom Nimblegen photoprint 85000 probe ROMA oligo array nssv1421321 S 31 1 0 "" nsv471507 17 33530002 33716058 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv547863,nssv547862,nssv547864 M 3 "" nsv471398 17 33541292 33552188 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548168,nssv548166,nssv548165 M 3 "" nsv833435 17 33585687 33697018 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453380,nssv1453369,nssv1453368,nssv1453365,nssv1453364,nssv1453367,nssv1453366,nssv1453371,nssv1453383,nssv1453370,nssv1453373,nssv1453372,nssv1453376,nssv1453382,nssv1453375,nssv1453374,nssv1453378,nssv1453381,nssv1453377,nssv1453379 M 95 17 3 "" esv33106 17 33708908 33767330 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv96743 S 51 1 0 "" 22011 nsv2041 17 33762762 33795562 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4262 S 9 1 0 "" NA12878 nsv469701 17 33803798 33955396 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649634 M 265 0 6 Samples from several populations that are part of the HapMap project. "" dgv959e1 17 33803799 34010545 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv659,essv3868,essv2545,essv24678,essv1183 M 271 0 0 "" NA11829,NA18951,NA18975,NA18994,NA19003 nsv833436 17 33865615 34078915 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453384 S 95 0 1 "" nsv9549 17 33874273 33941294 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28273 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19221 nsv2042 17 33945492 33962446 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4263 S 9 1 0 "" NA12878 nsv2044 17 33999357 34034160 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4264 S 9 1 0 "" NA12878 nsv833438 17 34003220 34231045 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453385 S 95 0 1 "" nsv833439 17 34153640 34333532 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453386 S 95 0 1 "" nsv2045 17 34304766 34337187 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2173 S 9 1 0 "" NA18555 nsv518273 17 34404031 34405895 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695705 S 2026 0 1 "" nsv2046 17 34432801 34494539 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2174,nssv7327 M 9 0 2 "" NA12156,NA18555 nsv833440 17 34442984 34620216 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453387 S 95 0 1 "" nsv833441 17 34574333 34730322 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453394,nssv1453390,nssv1453389,nssv1453391,nssv1453388,nssv1453392,nssv1453393,nssv1453397,nssv1453396,nssv1453395 M 95 0 10 "" nsv517435 17 34594761 34603181 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv652015,nssv673082 M 2026 0 2 "" nsv510709 17 34691945 34761921 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622717 S 4 0 1 "" NA18994 dgv50n6 17 34908706 34908987 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv111901,nsv112352 M 24 "" dgv40n68 17 34946406 35136390 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH nsv833442,nsv833443 M 95 0 3 "" nsv521294 17 34948235 35058384 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697898 S 2026 0 1 "" nsv2047 17 35012153 35047410 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1365 S 9 1 0 "" NA19240 nsv457738 17 35023531 35084561 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534864 S 1557 0 1 "" 1780862585_A nsv516757 17 35035375 35088067 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv673307,nssv654953,nssv656800,nssv674678,nssv691478,nssv676856,nssv670648,nssv671519,nssv688658,nssv693494 M 2026 0 10 "" nsv528093 17 35067606 35119531 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704631 S 2026 0 1 "" nsv2048 17 35128461 35152367 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2966 S 9 1 0 "" NA18555 nsv112056 17 35366072 35366072 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130634 M 24 "" nsv833444 17 35496349 35690806 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453401 S 95 0 1 "" nsv520636 17 35508215 35517723 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv673397,nssv679044 M 2026 0 2 "" nsv528369 17 35510219 35542529 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704956 S 2026 0 1 "" nsv525796 17 35559891 35658563 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701978 S 2026 1 0 "" dgv179n21 17 35641566 35658563 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv525961,nsv522863 M 2026 0 2 "" nsv833445 17 35720000 35891495 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453402 S 95 0 1 "" dgv960e1 17 36001826 36103630 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv20945,esv403 M 271 0 0 "" NA12801 nsv517580 17 36137258 36141325 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv668046,nssv685333,nssv679539,nssv652428 M 2026 0 4 "" nsv9550 17 36298167 36545355 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28275 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19221 nsv528074 17 36322979 36325760 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704610 S 2026 0 1 "" nsv111886 17 36357635 36357635 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130464 M 24 "" nsv442417 17 36457235 36463665 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" esv2751681 17 36463669 36481510 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6990122,essv6985373 M 771 0 1 "" SPC_156 nsv833446 17 36469391 36656785 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453403 S 95 1 0 "" nsv112586 17 36494308 36494308 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv131164 M 24 "" nsv507840 17 36497552 36503552 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620615,nssv619183 M 4 2 0 "" NA10860,NA15510 nsv111868 17 36506495 36506578 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130446 M 24 "" nsv442418 17 36510770 36528661 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv112423 17 36527731 36527835 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv131001 M 24 "" nsv528295 17 36539706 36541317 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704870 S 2026 0 1 "" dgv961e1 17 36554901 37150369 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv12165,esv770 M 271 0 0 "" NA19101 nsv112381 17 36577873 36577873 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130959 M 24 "" nsv111715 17 36594240 36594296 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130293 M 24 "" nsv510710 17 36621077 36692905 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620101,nssv617428,nssv618945 M 4 0 3 "" CHM,NA10860,NA15510 nsv9551 17 36635767 36686040 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24022,nssv20950,nssv27044,nssv27070,nssv23343,nssv27384,nssv24912,nssv22905,nssv25903,nssv24375,nssv27080,nssv24521,nssv23778,nssv23709,nssv25155,nssv26944,nssv23200,nssv26421,nssv27423,nssv28277,nssv22934,nssv24223,nssv23304,nssv27375,nssv25409,nssv27062,nssv24400,nssv24128,nssv26071,nssv21491,nssv25384 M 31 0 26 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10863,NA11830,NA12155,NA12802,NA12872,NA18502,NA18504,NA18517,NA18537,NA18552,NA18564,NA18853,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19144,NA19173,NA19221,NA19240 nsv2049 17 36636267 36657760 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9546,nssv5655 M 9 0 2 "" NA18507,NA19129 esv33487 17 36637937 36643557 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv95519,essv94892 M 51 0 2 "" 21847,22231 nsv442742 17 36641086 36647291 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv471399 17 36642241 36643231 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548171,nssv548170,nssv548169 M 3 "" nsv112484 17 36645819 36645819 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv131062 M 24 "" nsv2050 17 36667005 36710534 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5656,nssv4265,nssv10120,nssv10973,nssv1366,nssv6718,nssv2175 M 9 0 7 "" NA12156,NA12878,NA15510,NA18555,NA18956,NA19129,NA19240 nsv160 17 36672430 36691010 CNV Loss Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv160 S 1 0 1 "" NA15510 esv33045 17 36675647 36685241 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98745,essv97543,essv93923,essv100642,essv101036,essv95125,essv98228,essv94739,essv101317,essv94453,essv96887,essv95608,essv95429,essv93161,essv95335,essv101666,essv95870,essv94478,essv98953,essv92702,essv96092,essv96726,essv98534,essv100099,essv93589,essv93383,essv94888,essv92543,essv97633,essv100179,essv100560,essv100414,essv99424,essv98507,essv94302 M 51 35 0 "" 21606,21616,21634,21656,21693,21721,21772,21791,21805,21808,21817,21841,21847,21863,21872,21909,21911,21932,21938,21944,22007,22011,22085,22086,22128,22170,22231,22233,22278,22286,22298,22300,22335,22352,22394 nsv442743 17 36676540 36684057 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv518572 17 36728319 36775721 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696016 S 2026 0 1 "" nsv509656 17 36729965 36794338 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619713 S 4 1 0 "" NA10860 nsv9552 17 36732374 36753297 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28279 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19221 nsv2051 17 36758317 36785944 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1367 S 9 0 1 "" NA19240 nsv9553 17 36760010 36779675 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27090,nssv27432,nssv26090 M 31 0 3 Samples from several populations that are part of the HapMap project. "" NA18502,NA18860,NA19240 nsv457741 17 36763744 36775721 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534866 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00942 nsv516965 17 36763744 36775721 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv684225,nssv653521,nssv703927,nssv678790,nssv691016,nssv675019,nssv691479,nssv685043,nssv673966,nssv675167,nssv669964,nssv657276,nssv671935,nssv673671,nssv686221,nssv660272,nssv666853,nssv665438,nssv666554,nssv663280,nssv654642,nssv658821,nssv668201,nssv665041,nssv683304,nssv691380,nssv665224,nssv658124,nssv688766,nssv657366,nssv673083,nssv663073,nssv655084,nssv660371,nssv676322,nssv654318,nssv685871,nssv677126,nssv679797,nssv703926 M 2026 0 40 "" dgv23n64 17 36763744 36780688 CNV Loss Wang_et_al_2007 17921354 SNP_array nsv817761,nsv817763 M 112 0 6 "" NA19093,NA19094,NA19140,NA19142,NA19239,NA19240 nsv442744 17 36764438 36776021 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv438274 17 36773527 36778704 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470683,nssv470684 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA18522,NA19209 nsv526464 17 36775721 36784928 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702767 S 2026 1 0 "" nsv525048 17 36780688 36789385 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701093 S 2026 1 0 "" nsv817764 17 36784928 36789385 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415868 S 112 1 0 "" NA11992 nsv9554 17 36785202 36798980 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27100,nssv26109,nssv27441,nssv23401 M 31 4 0 Samples from several populations that are part of the HapMap project. "" NA10863,NA18502,NA18860,NA19240 nsv442745 17 36786395 36790200 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv2052 17 36786796 36812396 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1368 S 9 1 0 "" NA19240 nsv817765 17 36787562 36789385 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415919 S 112 1 0 "" NA11994 dgv962e1 17 36841593 37150369 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv15086,essv4327 M 271 0 0 "" NA18564,NA19129 nsv510711 17 36865553 36984742 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622718 S 4 0 1 "" NA18994 nsv526466 17 36890770 36944625 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702770 S 2026 1 0 "" nsv524606 17 36893304 36920055 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700567 S 2026 0 1 "" nsv9555 17 36897743 36983304 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24049,nssv26436,nssv24249 M 31 3 0 Samples from several populations that are part of the HapMap project. "" NA10839,NA18504,NA18564 esv34903 17 36899692 37042201 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6979522,essv6979523 M 771 1 0 "" NA18564 dgv963e1 17 36920120 36953340 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv14048,essv11314 M 271 0 0 "" NA18862,NA18863 nsv442419 17 36920703 36936394 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv2053 17 36975494 37008718 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4266 S 9 1 0 "" NA12878 nsv9556 17 36988009 36992630 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24076 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18564 nsv9557 17 36991285 36996015 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27449,nssv26128,nssv24426,nssv25210,nssv27072,nssv23805 M 31 0 6 Samples from several populations that are part of the HapMap project. "" NA18517,NA18853,NA18860,NA18980,NA19173,NA19240 nsv471400 17 36992059 36996673 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548173,nssv548172 M 3 "" nsv9559 17 36998799 37018970 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24103 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18564 nsv9560 17 37046997 37049984 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26147 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19240 nsv2055 17 37048216 37081335 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7328 S 9 1 0 "" NA12156 nsv9561 17 37058714 37061632 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26166 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19240 nsv833447 17 37204057 37360819 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453404 S 95 0 1 "" nsv2056 17 37333080 37380705 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1369,nssv4267,nssv6720,nssv9326,nssv2967,nssv5657 M 9 6 0 "" NA12156,NA12878,NA18517,NA18555,NA19129,NA19240 nsv509658 17 37337270 37408432 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621039,nssv619714 M 4 2 0 "" NA10860,NA15510 nsv833449 17 37680398 37826625 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453406,nssv1453405 M 95 0 2 "" esv33998 17 37910722 38710722 OTHER Inversion Stefansson et al 2005 15654335 PCR,Southern Not Provided "" S 1 "" RP11 nsv111876 17 37955040 37961266 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130454 M 24 "" nsv833450 17 38066529 38230687 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453407 S 95 0 1 "" nsv457742 17 38313321 38425007 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534867 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00076 nsv2057 17 38352399 38385873 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7329 S 9 1 0 "" NA12156 nsv112322 17 38372737 38372946 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130900 M 24 "" nsv457743 17 38444655 38552381 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534868 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01028 nsv510712 17 38710803 38766400 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618946,nssv622719 M 4 0 2 "" NA10860,NA18994 nsv833451 17 38762512 38932040 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453408 S 95 0 1 "" nsv833452 17 38766476 38842446 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453409,nssv1453410 M 95 0 2 "" nsv2058 17 38777604 38805931 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1370,nssv10122,nssv5658 M 9 3 0 "" NA18956,NA19129,NA19240 esv32844 17 38780759 38825561 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97612,essv101254,essv93811,essv101066,essv95220,essv98310,essv94100,essv96902,essv95750,essv95314,essv101769,essv94578,essv99015,essv96226,essv97088,essv96043,essv93545,essv92616,essv97616,essv100385,essv96262 M 51 2 19 "" 21616,21618,21634,21693,21721,21772,21802,21817,21841,21872,21909,21932,21938,22007,22075,22127,22128,22233,22278,22300,22371 nsv833453 17 38864523 39045455 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453413,nssv1453411,nssv1453412 M 95 1 2 "" nsv2059 17 38969898 39004023 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2968 S 9 1 0 "" NA18555 nsv2060 17 39161535 39195131 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5661 S 9 1 0 "" NA19129 nsv524189 17 39171292 39176612 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700072 S 2026 0 1 "" nsv833454 17 39373742 39591205 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453414 S 95 0 1 "" nsv112219 17 39409356 39409356 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130797 M 24 "" nsv833455 17 39541447 39730194 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453418,nssv1453417,nssv1453416,nssv1453415,nssv1453419,nssv1453420,nssv1453421,nssv1453422 M 95 0 8 "" nsv510713 17 39634073 39773281 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620102 S 4 0 1 "" NA15510 nsv112063 17 39673986 39675990 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130641 M 24 "" nsv2061 17 39743892 39777945 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1371 S 9 1 0 "" NA19240 nsv112474 17 39945096 39946338 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv131052 M 24 "" nsv527258 17 40005308 40011269 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703663 S 2026 0 1 "" nsv833456 17 40072682 40258767 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453425,nssv1453424,nssv1453423 M 95 2 1 "" nsv112452 17 40103453 40110442 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv131030 M 24 "" nsv111783 17 40158600 40159186 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130361 M 24 "" nsv523493 17 40248321 40276455 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699262 S 2026 0 1 "" nsv833457 17 40328069 40495152 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453426 S 95 0 1 "" nsv527788 17 40332718 40659391 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704280 S 2026 0 1 "" nsv516758 17 40337025 40344614 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv662144,nssv676741,nssv674975,nssv670649 M 2026 0 4 "" nsv527366 17 40410565 40411244 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703797 S 2026 0 1 "" nsv112559 17 40446934 40447686 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv131137 M 24 "" nsv522514 17 40554524 40555820 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705883 S 2026 0 1 "" nsv2062 17 40578525 40605766 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1372 S 9 1 0 "" NA19240 dgv964e1 17 40813669 41072668 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv12008,essv10976,essv14205,essv3671 M 271 0 0 "" NA18913,NA18943,NA19092,NA19141 esv627 17 40813669 41171794 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent + Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 "" nsv511056 17 40815030 40967180 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621640 S 4 0 0 "" NA15510 dgv965e1 17 40815480 41015758 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv12065,essv11613,essv25051,essv14805,essv13493,essv13290 M 271 0 0 "" NA12801,NA18870,NA18914,NA19202,NA19207,NA19238 dgv123e55 17 40826543 41022689 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv34307,esv34266,esv34577,esv35084 M 771 0 4 "" NA07034,NA12814,NA18505,NA18969 nsv9562 17 40864626 40889950 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28281 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19221 dgv966e1 17 40897439 41015758 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv14924,essv1042,essv7929,essv3664,essv11385,essv3330,essv18490,essv12955,essv15435,essv18041,essv19710,essv11,essv15963,essv11394,essv6469,essv1648,essv1697,essv13105,essv9556,essv16381,essv11305,essv17862,essv9966,essv1972,essv13368,essv13961,essv2356,essv3850,essv23287,essv13283,essv8407 M 271 0 0 "" NA06993,NA10857,NA12006,NA12156,NA12236,NA18637,NA18859,NA18861,NA18863,NA18942,NA18945,NA18948,NA18953,NA18961,NA18968,NA18975,NA18991,NA18995,NA19093,NA19102,NA19127,NA19129,NA19142,NA19159,NA19160,NA19172,NA19192,NA19201,NA19204,NA19206,NA19209 dgv124e55 17 40897439 41022689 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv35055,esv34924 M 771 0 2 "" NA10857,NA12802 dgv967e1 17 40897439 41089766 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv8516,essv21872,essv16615,essv12125,essv20689,essv8985,essv19049,essv3449,essv9576,essv3939 M 271 0 0 "" NA06991,NA07034,NA12802,NA18501,NA18523,NA18956,NA18970,NA19173,NA19194,NA19208 nsv7294 17 40899921 41989253 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6721,nssv4270 M 9 0 0 "" NA12156,NA12878 nsv509659 17 40914367 40967180 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619715,nssv618122,nssv623714 M 4 3 0 "" CHM,NA10860,NA18994 esv33076 17 40926182 41031220 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv94029,essv96173,essv93486,essv96451,essv99287,essv97624,essv100387,essv98358 M 51 3 5 "" 21802,22007,22128,22261,22275,22278,22300,22352 nsv9563 17 40927895 41062697 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23910,nssv25235,nssv25975,nssv23457,nssv24182,nssv26450,nssv27092,nssv23832,nssv23429,nssv24130,nssv28315,nssv23737,nssv25434,nssv23360,nssv24547,nssv24156,nssv26215,nssv24154,nssv26234,nssv21499,nssv23332,nssv24681,nssv24633,nssv28317,nssv28313,nssv20980,nssv22992,nssv21010,nssv23228,nssv21521,nssv20975,nssv24937,nssv24305,nssv22963,nssv25924,nssv24180,nssv24452,nssv23937,nssv27082 M 31 21 12 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10847,NA10863,NA11830,NA12155,NA12740,NA12802,NA12872,NA18504,NA18517,NA18537,NA18552,NA18563,NA18564,NA18572,NA18853,NA18942,NA18975,NA18980,NA19144,NA19173,NA19221,NA19240 nsv161 17 40929636 40950911 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv161 S 1 1 0 "" NA15510 nsv2063 17 40929636 40973216 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9967,nssv10974,nssv2177,nssv10123,nssv4268,nssv10975,nssv6722,nssv4269,nssv2176,nssv5662 M 9 7 0 "" NA12156,NA12878,NA15510,NA18507,NA18555,NA18956,NA19129 nsv524234 17 40938465 41013704 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700124 S 2026 0 1 "" nsv442746 17 40941539 41004287 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv162 17 40950280 40970427 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv162 S 1 1 0 "" NA15510 nsv2064 17 40973796 41019235 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6723 S 9 0 1 "" NA12156 dgv968e1 17 40977732 41171794 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv23067,essv21461 M 271 0 0 "" NA12717,NA12812 nsv833458 17 41000969 41140944 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453428,nssv1453429,nssv1453427 M 95 3 0 "" nsv442747 17 41006741 41015665 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv969e1 17 41006823 41015758 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2556,essv20540,essv20854,essv978,essv729,essv738,essv4096,essv14259,essv13993,essv8672,essv8049,essv17367,essv4331,essv9837,essv5012,essv14836,essv18505,essv21897,essv11324,essv21593,essv24318,essv12932,essv12076,essv25153,essv21948,essv14936,essv13403,essv3619,essv8078,essv22801,essv7883,essv1796 M 271 0 0 "" NA07000,NA10838,NA11829,NA11839,NA11882,NA11995,NA12155,NA12753,NA12763,NA18517,NA18529,NA18564,NA18571,NA18872,NA18940,NA18964,NA18966,NA18971,NA18974,NA19003,NA19094,NA19098,NA19099,NA19100,NA19101,NA19103,NA19119,NA19128,NA19132,NA19140,NA19144,NA19161 dgv125e55 17 41006823 41022689 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv34971,esv34801,esv34998,esv34232,esv35061,esv34594,esv34948,esv34974,esv35021,esv34268 M 771 10 0 "" NA07055,NA11993,NA11994,NA12239,NA12717,NA12751,NA12812,NA12865,NA12878,NA12891 dgv126e55 17 41006823 41049321 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv2751684,esv35162,esv2751683 M 771 3 0 "" BEC_348,BEC_603,NA10859 dgv970e1 17 41006823 41049321 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv13310,essv12144,essv7970,essv1294,essv5873,essv8007,essv17215,essv14032,essv8027,essv3609,essv13330,essv511,essv2746 M 271 0 0 "" NA18500,NA18505,NA18507,NA18562,NA18857,NA18862,NA18871,NA18952,NA18965,NA18969,NA18980,NA19221,NA19240 dgv971e1 17 41006823 41072668 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv5835,essv10601 M 271 0 0 "" NA18524,NA19211 nsv2066 17 41025629 41058131 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10124 S 9 1 0 "" NA18956 nsv457744 17 41074926 41140560 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534869 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00868 nsv2067 17 41155833 41190993 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4271 S 9 1 0 "" NA12878 nsv833460 17 41231722 41326291 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453430 S 95 0 1 "" nsv522515 17 41278960 41279463 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705884 S 2026 0 1 "" nsv518110 17 41281077 41282569 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695523 S 2026 0 1 "" dgv127e55 17 41360800 42166300 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv2751750,esv2751734,esv2751692,esv2751747,esv2751742,esv2751735,esv2751732,esv2751733,esv2751685,esv2751691,esv2751694,esv2751695,esv2751697,esv2751705,esv2751741,esv2751748,esv2751749,esv2751756 M 771 18 0 "" BEC_101,BEC_126,BEC_191,BEC_316,BEC_359,BEC_397,BEC_41,BEC_497,BEC_512,BEC_549,BEC_603,BEC_644,BEC_711,BEC_722,BEC_826,SPC_10,SPC_188,SPC_25 nsv510714 17 41389278 41460698 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618947 S 4 0 1 "" NA10860 esv2751686 17 41395400 41719833 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6981253,essv6981254 M 771 1 0 "" BEC_374 nsv469705 17 41402506 41560265 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649726 M 265 0 7 Samples from several populations that are part of the HapMap project. "" nsv2068 17 41427543 41462421 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1373 S 9 1 0 "" NA19240 nsv469537 17 41435315 41596496 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649646 M 265 1 4 Samples from several populations that are part of the HapMap project. "" nsv471698 17 41435316 41734030 CNV Gain+Loss Sharp et al 2005 15918152 BAC_aCGH,FISH Eichler Segmental Duplication BAC array nssv548952,nssv548955,nssv550122,nssv548962,nssv548950,nssv550153,nssv548967,nssv548973,nssv548963,nssv550126,nssv548953,nssv550141,nssv550147,nssv550137,nssv550121,nssv548966,nssv550115,nssv548964,nssv548965,nssv550138,nssv550139,nssv550117,nssv550120,nssv550127,nssv550124,nssv550144,nssv550145,nssv548971,nssv548956,nssv550151,nssv550152,nssv550150,nssv550114,nssv548954,nssv550132,nssv548976,nssv548959,nssv550118,nssv550130,nssv550113,nssv550129,nssv548981,nssv550133,nssv550123,nssv550134,nssv548968,nssv550131,nssv550148,nssv548975,nssv550135,nssv548969,nssv548977,nssv550125,nssv548961,nssv548978,nssv548980,nssv550119,nssv548972,nssv548974,nssv550142,nssv548970,nssv550136,nssv550154,nssv548979,nssv550128,nssv548951,nssv550140,nssv550116,nssv550143,nssv548958,nssv548960,nssv550149,nssv548957,nssv550146,nssv548982,nssv548949 M 48 1 44 "" JK1051,JK1058,JK1061,JK1688,JK776,NA10469,NA10470,NA10471,NA10472,NA10473,NA10492,NA10493,NA10494,NA10495,NA10496,NA10967,NA10969,NA10970,NA10971,NA10976,NA10979,NA11323,NA11521,NA11523,NA15724,NA15725,NA15726,NA15727,NA15728,NA15729,NA15730,NA15731,NA15733,NA16688,NA16689,NA17014,NA17015,NA17016,NA17017,NA17020,NA17051,NA17052,NA17058,NA17059,P86GA dgv972e1 17 41439751 41734030 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv18224,essv22592,essv21787,essv24756,essv21683,essv21553,essv18754,essv19168 M 271 0 0 "" NA07348,NA10860,NA12057,NA12239,NA12248,NA12865,NA12873,NA12874 dgv973e1 17 41439751 41958405 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv17673,essv20304,essv17523,essv19700,essv24372,essv20200,essv22451,essv20796,essv23059,essv19903,essv18120,essv18362,essv21308,essv23130,essv21425,essv18834 M 271 0 0 "" NA11832,NA11881,NA11993,NA11994,NA12144,NA12146,NA12264,NA12707,NA12717,NA12751,NA12761,NA12762,NA12812,NA12813,NA12878,NA12891 dgv974e1 17 41439751 42268630 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv23272,essv21918,essv19837,essv24216,essv20310,essv19306,essv19772,essv18657,essv22331,essv23295,essv22271,essv4852,essv23187,essv21578,essv25140,essv21356,essv20447,essv18816,essv20986,essv19620,essv21844,essv18533,essv22000,essv22514,essv17790,essv24120,essv22005,essv17616,essv21152,essv23092,essv17994,essv23781,essv23750,essv18465,essv24461,essv22734,essv23642,essv20550,essv24345,essv23530,essv18963,essv18037,essv21106,essv18899,essv17688,essv23610,essv19359,essv113,essv24067,essv20825 M 271 0 0 "" NA06985,NA06993,NA06994,NA07019,NA07022,NA07048,NA07055,NA07345,NA10831,NA10835,NA10839,NA10847,NA10854,NA10855,NA10859,NA10860,NA10863,NA11832,NA11839,NA11882,NA11994,NA11995,NA12005,NA12006,NA12043,NA12057,NA12144,NA12146,NA12155,NA12156,NA12234,NA12236,NA12239,NA12248,NA12717,NA12753,NA12762,NA12763,NA12815,NA12865,NA18540,NA18968 dgv975e1 17 41439751 42268630 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv21293,essv17422,essv20107,essv25002,essv22752,essv23432,essv22232,essv20135 M 271 0 0 "" NA07019,NA07048,NA07345,NA10839,NA10854,NA10855,NA12043,NA12044 dgv976e1 17 41439751 42632332 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv848,essv24917,essv7601 M 271 0 0 "" NA06994,NA18545 dgv128e55 17 41450308 41719833 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv2751729,esv2751698,esv34316,esv2751738,esv35008,esv2751702,esv2751722,esv2751751,esv34642,esv2751739,esv2751716,esv2751710,esv2751724,esv2751725,esv34326,esv2751721,esv2751693,esv2751719,esv2751718,esv2751744,esv2751709,esv2751688,esv34723,esv2751746,esv2751754,esv34211,esv34225,esv34241,esv34256,esv34343,esv34374,esv34584,esv34589,esv34641,esv34695,esv34740,esv34887,esv34946,esv35089,esv34587,esv2751687,esv2751689,esv2751690,esv2751696,esv2751699,esv2751700,esv2751701,esv2751703,esv2751704,esv2751706,esv2751707,esv2751708,esv2751712,esv2751713,esv2751714,esv2751715,esv2751717,esv2751720,esv2751723,esv2751726,esv2751727,esv2751728,esv2751730,esv2751731,esv2751736,esv2751737,esv2751740,esv2751745,esv2751752,esv2751753 M 771 70 0 "" BEC_103,BEC_175,BEC_22,BEC_289,BEC_299,BEC_303,BEC_304,BEC_312,BEC_314,BEC_335,BEC_348,BEC_353,BEC_355,BEC_371,BEC_395,BEC_402,BEC_433,BEC_501,BEC_535,BEC_546,BEC_561,BEC_563,BEC_578,BEC_597,BEC_636,BEC_647,BEC_669,BEC_671,BEC_674,BEC_685,BEC_688,BEC_695,BEC_717,BEC_727,BEC_730,BEC_8,NA07022,NA10847,NA10859,NA11839,NA11881,NA11993,NA12005,NA12144,NA12146,NA12234,NA12236,NA12264,NA12707,NA12717,NA12751,NA12761,NA12812,NA12874,NA12878,NA12891,SPC_1,SPC_108,SPC_128,SPC_153,SPC_162,SPC_163,SPC_180,SPC_183,SPC_194,SPC_29,SPC_38,SPC_47,SPC_93,SPC_99 nsv516807 17 41465321 42148466 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv684314,nssv672016,nssv659797,nssv675258,nssv689668,nssv653920,nssv665687,nssv684503,nssv656434,nssv660247,nssv691158,nssv658913,nssv664105,nssv680964,nssv704510,nssv692847,nssv678391,nssv659686,nssv680996,nssv653977,nssv682369,nssv656209,nssv668954,nssv692120,nssv668270,nssv671261,nssv691724,nssv655181,nssv676197,nssv668756,nssv660510,nssv692966,nssv668901,nssv668405,nssv662883,nssv674367,nssv685440,nssv655810,nssv657220,nssv668987,nssv658048,nssv674658,nssv671089,nssv683743,nssv681799,nssv654824,nssv678668,nssv667026,nssv662247,nssv686898,nssv658347,nssv689115,nssv679540,nssv654776,nssv693206,nssv672762,nssv694030,nssv692058,nssv672374,nssv690549,nssv689702,nssv653460,nssv665517,nssv690324,nssv663621,nssv689789,nssv693332,nssv653726,nssv690497,nssv655665 M 2026 69 1 "" dgv366n27 17 41465690 41648797 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv457752,nsv457749,nsv457750,nsv457747 M 1557 4 0 "" 1780862592_A,1780862594_A,NINDS_205,NINDS_66 nsv2069 17 41467598 41498847 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10125 S 9 1 0 "" NA18956 nsv457748 17 41474116 41648797 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534871 S 1557 0 1 "" NINDS_162 dgv129e55 17 41513416 41719833 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv2751743,esv2751755,esv2751711 M 771 0 3 "" BEC_24,BEC_508,BEC_547 nsv821687 17 41515374 42125543 CNV Gain Sebat_et_al_2004 15273396 ROMA Custom Nimblegen photoprint 85000 probe ROMA oligo array nssv1421322,nssv1421325,nssv1421323 M 31 3 0 "" dgv977e1 17 41518102 41760200 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv19840,essv18269,essv21625,essv18497,essv19732,essv23698,essv19146,essv21004,essv20377,essv24945,essv23665,essv19890,essv24339,essv24176,essv24593,essv18540,essv21409,essv19499,essv17735,essv24018,essv20497,essv18008,essv20641,essv25071,essv18783,essv23320,essv19116,essv21636 M 271 0 0 "" NA06991,NA07348,NA10830,NA10846,NA10859,NA10863,NA11881,NA11882,NA11992,NA11993,NA12044,NA12156,NA12234,NA12264,NA12707,NA12740,NA12751,NA12761,NA12812,NA12864,NA12872,NA12873,NA12874,NA12878,NA12891,NA12892 esv33048 17 41518251 42049569 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101581,essv98873,essv97499,essv101155,essv93854,essv96840,essv101101,essv95137,essv98275,essv94742,essv94006,essv96884,essv97955,essv95753,essv93122,essv97370,essv101727,essv95897,essv94516,essv99028,essv92939,essv92775,essv96196,essv96598,essv93588,essv99659,essv98100,essv96460,essv99261,essv97641,essv97776,essv100576,essv100449,essv99401,essv98500,essv96405,essv94282 M 51 36 1 "" 21603,21606,21616,21618,21634,21659,21693,21721,21772,21791,21802,21817,21837,21841,21863,21879,21909,21911,21932,21938,21939,21944,22007,22011,22128,22217,22259,22261,22275,22278,22298,22300,22335,22352,22371,22394 nsv833461 17 41519537 41644115 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453431,nssv1453440,nssv1453445,nssv1453448,nssv1453443,nssv1453446,nssv1453433,nssv1453432,nssv1453450,nssv1453438,nssv1453437,nssv1453442,nssv1453449,nssv1453441,nssv1453436,nssv1453435,nssv1453439,nssv1453444,nssv1453447,nssv1453434 M 95 20 0 "" dgv367n27 17 41519743 41648797 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv457794,nsv457811,nsv457782,nsv457753,nsv457755,nsv457784,nsv457820,nsv457765,nsv457802,nsv457798,nsv457792,nsv457795,nsv457764,nsv457806,nsv457769,nsv457812,nsv457781,nsv457817,nsv457800,nsv457819,nsv457776,nsv457810,nsv457780,nsv457766,nsv457809,nsv457786,nsv457756,nsv457778,nsv457775,nsv457793,nsv457814,nsv457813,nsv457788,nsv457761,nsv457808,nsv457789,nsv457799,nsv457801,nsv457777,nsv457803,nsv457791,nsv457768,nsv457767,nsv457779,nsv457790,nsv457797,nsv457783,nsv457804,nsv457787,nsv457771,nsv457815,nsv457772,nsv457754,nsv457805,nsv457763,nsv457770,nsv457816 M 1557 57 0 "" HGDP00011,HGDP00015,HGDP00019,HGDP00043,HGDP00056,HGDP00058,HGDP00062,HGDP00070,HGDP00080,HGDP00082,HGDP00094,HGDP00099,HGDP00108,HGDP00116,HGDP00122,HGDP00134,HGDP00137,HGDP00149,HGDP00153,HGDP00155,HGDP00177,HGDP00199,HGDP00309,HGDP00319,HGDP00351,HGDP00376,HGDP00428,HGDP00444,HGDP00519,HGDP00524,HGDP00526,HGDP00527,HGDP00534,HGDP00594,HGDP00639,HGDP00666,HGDP00670,HGDP00696,HGDP00697,HGDP00732,HGDP00805,HGDP00806,HGDP00881,HGDP00894,HGDP00898,HGDP01073,HGDP01076,HGDP01079,HGDP01152,HGDP01172,HGDP01300,HGDP01303,HGDP01305,HGDP01369,HGDP01374,HGDP01377,HGDP01378 nsv9564 17 41521002 42142391 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23597,nssv26288,nssv21551,nssv23764,nssv27112,nssv21125,nssv24733,nssv26955,nssv26464,nssv26492,nssv26478,nssv28321,nssv24685,nssv23418,nssv21559,nssv21040,nssv25511,nssv25260,nssv23886,nssv24784,nssv23818,nssv27122,nssv26270,nssv23859,nssv27102,nssv24711,nssv23513,nssv23964,nssv23485,nssv24234,nssv23284,nssv24707,nssv23312,nssv21095,nssv25488,nssv21529,nssv23020,nssv27110,nssv23256,nssv27054,nssv24504,nssv23446,nssv23791,nssv25285,nssv23569,nssv23340,nssv28319,nssv26965,nssv26252,nssv24809,nssv21005,nssv23048,nssv24206,nssv24478,nssv24232,nssv23913,nssv24208,nssv24258,nssv23541,nssv21035,nssv24962,nssv24331,nssv24659,nssv24759,nssv21100,nssv25995 M 31 25 6 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10847,NA10863,NA11830,NA12155,NA12740,NA12802,NA12872,NA18502,NA18504,NA18517,NA18537,NA18552,NA18563,NA18564,NA18572,NA18853,NA18942,NA18972,NA18975,NA18980,NA19132,NA19144,NA19173,NA19221,NA19240 nsv442748 17 41521619 41719991 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv433449 17 41521621 41709662 CNV Gain Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463330 S 9 1 0 Samples from several populations that are part of the HapMap project. "" NA12878 dgv24n64 17 41525626 41605885 CNV Gain Wang_et_al_2007 17921354 SNP_array nsv817766,nsv817768 M 112 5 0 "" NA10835,NA12043,NA12248,NA12740,NA12751 dgv368n27 17 41525626 41609400 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv457757,nsv457760,nsv457758,nsv457759 M 1557 4 0 "" HGDP00224,HGDP00313,HGDP00682,HGDP01174 dgv25n64 17 41525626 41705867 CNV Gain Wang_et_al_2007 17921354 SNP_array nsv817769,nsv817767 M 112 15 0 "" NA07345,NA07348,NA10847,NA10859,NA10860,NA10863,NA11881,NA11993,NA12146,NA12234,NA12239,NA12812,NA12878,NA12891,NA12892 dgv130e55 17 41543275 41719833 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv2751761,esv34389,esv34949,esv2751757,esv34609,esv34876,esv2751758,esv2751759,esv2751760,esv2751763,esv2751764 M 771 11 0 "" BEC_425,BEC_522,BEC_625,BEC_666,BEC_692,BEC_792,NA06993,NA12752,NA12815,SPC_193,SPC_80 dgv978e1 17 41559185 41843177 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv23854,essv22653,essv24140 M 271 0 0 "" NA07022,NA10847,NA12752 dgv131e55 17 41568981 41719833 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv2751762,esv2751765 M 771 0 2 "" BEC_176,NA07029 nsv471492 17 41569001 41649000 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv547820 S 3 "" dgv979e1 17 41569871 41590303 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv21470,essv23724 M 271 0 0 "" NA10830,NA12813 dgv980e1 17 41569871 41719833 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv19801,essv19707,essv22792 M 271 0 0 "" NA12236,NA12753,NA12864 nsv469697 17 41572523 41734030 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649629 M 265 5 18 Samples from several populations that are part of the HapMap project. "" nsv833462 17 41590929 41719579 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453452,nssv1453451,nssv1453458,nssv1453456,nssv1453457,nssv1453453,nssv1453454,nssv1453455 M 95 8 0 "" dgv981e1 17 41604625 41719833 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv23742,essv19351,essv21484,essv22250,essv20722,essv24641,essv19313 M 271 0 0 "" NA06985,NA10830,NA10846,NA11992,NA12752,NA12813,NA12872 dgv982e1 17 41604625 41760200 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv21599,essv23160 M 271 0 0 "" NA10831,NA12155 dgv13n31 17 41713832 41781181 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis nsv471502,nsv471497 M 3 "" nsv2070 17 41714303 41981453 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4272,nssv10976 M 9 0 2 "" NA12878,NA15510 nsv511057 17 41720555 41944000 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622420,nssv618627 M 4 0 0 "" CHM,NA10860 nsv163 17 41724262 41981453 CNV Loss Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv163 S 1 0 1 "" NA15510 dgv983e1 17 41747597 41958405 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv19417,essv5731,essv1961 M 271 0 0 "" NA11840,NA18593,NA18959 dgv984e1 17 41747597 42061631 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv31,essv14375,essv20588,essv2487,essv12640,essv18071,essv2293,essv22094,essv23221,essv12410,essv6751,essv14444,essv7023,essv11454,essv19081,essv7711,essv11849,essv18743,essv3694,essv17252 M 271 0 0 "" NA07029,NA07055,NA07056,NA12145,NA12154,NA12874,NA18500,NA18503,NA18507,NA18562,NA18612,NA18633,NA18857,NA18947,NA18966,NA18991,NA18999,NA19201,NA19221,NA19238 dgv985e1 17 41747597 42268630 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv832,essv10553,essv698,essv7423,essv8847,essv1821,essv10426,essv1485,essv3040,essv7316,essv2540,essv2577,essv5098,essv9926,essv6822,essv24275,essv14883,essv4783,essv3874,essv3207,essv553,essv4602,essv22579,essv878,essv5917,essv24864,essv16144,essv3175,essv22138,essv5800,essv14554,essv7089,essv22976,essv1107,essv364,essv18217,essv5379,essv13158,essv2074,essv5253,essv15038,essv13666,essv13637,essv1239,essv5571,essv2664,essv9070,essv15581,essv18400,essv23462,essv16210,essv5147,essv24651,essv12183,essv17016,essv6889,essv22889,essv12815,essv24385,essv786,essv4699,essv11988,essv8283,essv15534,essv9716,essv4473,essv4236,essv23995,essv11726,essv14756,essv6288,essv4135,essv7755,essv20905,essv4976,essv6391,essv24517,essv9350,essv19213,essv11494,essv21046,essv5035,essv23015,essv13428,essv4649,essv4867,essv21216,essv12996,essv23871,essv9623,essv13541,essv14361,essv16659,essv5446,essv2791,essv15300,essv15286,essv17080,essv16777,essv10744,essv21548,essv10032,essv7304,essv12481,essv2326,essv1609,essv1445,essv22396,essv3393,essv6673,essv22848,essv22410,essv255,essv16512,essv20656,essv2900,essv3778,essv3554,essv18443,essv6305,essv11746,essv3084,essv3980,essv9200,essv10211,essv10292,essv442 M 271 0 0 "" NA06991,NA07000,NA07034,NA07348,NA07357,NA10838,NA10856,NA10857,NA10861,NA11829,NA11830,NA11831,NA12004,NA12057,NA12249,NA12707,NA12716,NA12760,NA12801,NA12802,NA12812,NA12814,NA12873,NA12875,NA12892,NA18504,NA18505,NA18506,NA18508,NA18517,NA18522,NA18523,NA18524,NA18529,NA18537,NA18542,NA18550,NA18552,NA18555,NA18561,NA18563,NA18564,NA18566,NA18570,NA18572,NA18576,NA18577,NA18579,NA18592,NA18594,NA18603,NA18605,NA18608,NA18609,NA18620,NA18622,NA18623,NA18624,NA18632,NA18636,NA18637,NA18853,NA18859,NA18862,NA18872,NA18913,NA18940,NA18942,NA18944,NA18945,NA18948,NA18949,NA18952,NA18953,NA18956,NA18961,NA18964,NA18965,NA18967,NA18969,NA18970,NA18971,NA18973,NA18974,NA18975,NA18976,NA18980,NA18981,NA18987,NA18990,NA18994,NA18995,NA18998,NA19000,NA19003,NA19012,NA19094,NA19099,NA19100,NA19101,NA19102,NA19103,NA19119,NA19120,NA19127,NA19128,NA19129,NA19132,NA19137,NA19141,NA19142,NA19144,NA19145,NA19152,NA19154,NA19159,NA19160,NA19161,NA19172,NA19173,NA19192,NA19194,NA19202,NA19207,NA19210,NA19222,NA19240 nsv442749 17 41756832 42107479 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv15n14 17 41781186 41935452 CNV Loss Cooper et al 2008 18776910 SNP_array nsv433307,nsv433308,nsv433306 M 9 0 3 "" NA12878,NA18507,NA18517 nsv833463 17 41834276 42009713 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453506,nssv1453470,nssv1453466,nssv1453471,nssv1453478,nssv1453472,nssv1453484,nssv1453459,nssv1453473,nssv1453477,nssv1453503,nssv1453505,nssv1453475,nssv1453474,nssv1453501,nssv1453497,nssv1453502,nssv1453504,nssv1453481,nssv1453461,nssv1453460,nssv1453483,nssv1453480,nssv1453479,nssv1453482,nssv1453486,nssv1453469,nssv1453495,nssv1453467,nssv1453463,nssv1453487,nssv1453485,nssv1453496,nssv1453465,nssv1453500,nssv1453462,nssv1453498,nssv1453499,nssv1453464,nssv1453476,nssv1453489,nssv1453494,nssv1453493,nssv1453488,nssv1453490,nssv1453468,nssv1453492,nssv1453491 M 95 0 48 "" nsv510715 17 41885305 42104457 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622720 S 4 0 1 "" NA18994 dgv14n31 17 41915001 41998660 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis nsv471503,nsv471508 M 3 "" nsv433450 17 41922658 42005250 CNV Gain Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463331 S 9 1 0 Samples from several populations that are part of the HapMap project. "" NA12878 nsv433451 17 41936430 42092850 CNV Gain Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463332 S 9 1 0 Samples from several populations that are part of the HapMap project. "" NA19240 nsv469644 17 41941680 42110774 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649571 M 265 32 26 Samples from several populations that are part of the HapMap project. "" nsv471700 17 41941681 42110774 CNV Gain+Loss Sharp et al 2005 15918152 BAC_aCGH,FISH Eichler Segmental Duplication BAC array nssv549830,nssv549834,nssv549835,nssv549818,nssv549822,nssv549823,nssv549825,nssv549828,nssv549829,nssv549819,nssv549820,nssv549831,nssv549826,nssv549832,nssv549824,nssv549827,nssv549833,nssv549821 M 48 12 6 "" JK1051,JK1688,NA10492,NA10967,NA10970,NA10971,NA11323,NA11776,NA15728,NA15729,NA16688,NA17014,NA17015,NA17016,NA17017,NA17020,NA17058,P86GA nsv833464 17 41949832 42110026 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453507 S 95 1 0 "" nsv471401 17 41989936 42012375 CNV Complex Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548176,nssv548174,nssv548175 M 3 "" nsv482202 17 41989936 42012375 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558563 S 1 1 0 "" KB1 nsv471514 17 41998661 42133889 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv547877,nssv547876 M 3 "" dgv16n14 17 42005250 42145209 CNV Loss Cooper et al 2008 18776910 SNP_array nsv433309,nsv433312,nsv433311 M 9 0 3 "" NA12878,NA18507,NA18517 nsv471402 17 42023354 42190000 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548177,nssv548179 M 3 "" nsv833465 17 42061812 42244748 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453535,nssv1453528,nssv1453512,nssv1453519,nssv1453523,nssv1453522,nssv1453520,nssv1453524,nssv1453529,nssv1453525,nssv1453527,nssv1453510,nssv1453511,nssv1453531,nssv1453534,nssv1453530,nssv1453509,nssv1453508,nssv1453533,nssv1453521,nssv1453532,nssv1453544,nssv1453513,nssv1453537,nssv1453536,nssv1453518,nssv1453540,nssv1453539,nssv1453538,nssv1453543,nssv1453541,nssv1453542,nssv1453517,nssv1453526,nssv1453547,nssv1453546,nssv1453545,nssv1453516,nssv1453514,nssv1453515 M 95 0 40 "" nsv527367 17 42280490 42280547 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703798 S 2026 0 1 "" dgv986e1 17 42326359 42632332 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv657,essv22301,essv3126,essv22132,essv6328,essv7131,essv12219,essv5364,essv16273,essv22199,essv17744,essv467,essv20070,essv5488,essv21070,essv7419,essv24999,essv1588,essv3372,essv14792,essv2904,essv369,essv23586,essv23444,essv160,essv21305 M 271 0 0 "" NA06985,NA06991,NA07048,NA10831,NA10839,NA10854,NA10855,NA10857,NA12006,NA12044,NA18537,NA18563,NA18609,NA18623,NA18632,NA18942,NA18945,NA18952,NA18953,NA18968,NA18969,NA18971,NA18975,NA19101,NA19159,NA19161 nsv528514 17 42334704 42338180 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705121 S 2026 0 1 "" dgv41n68 17 42375359 42607623 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH nsv833467,nsv833466 M 95 0 4 "" nsv522797 17 42439278 42538151 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698442 S 2026 1 0 "" nsv9565 17 42443303 42490258 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26305,nssv23474,nssv28323,nssv24987,nssv27120,nssv24530,nssv24260,nssv24021,nssv23398,nssv24737,nssv21589,nssv24357,nssv23106 M 31 13 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA10839,NA11830,NA18502,NA18537,NA18563,NA18564,NA18572,NA18942,NA18975,NA18980,NA19221,NA19240 nsv521632 17 42506548 42551189 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698251 S 2026 1 0 "" nsv521092 17 42664692 42672498 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697782 S 2026 0 1 "" nsv457821 17 42774138 42902077 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534942 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00356 nsv516872 17 42774138 43057279 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv654611,nssv656569,nssv698106 M 2026 1 2 "" nsv525267 17 42806893 43090705 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701367 S 2026 1 0 "" nsv833468 17 42866562 43038163 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453552 S 95 1 0 "" nsv469573 17 42866581 43053941 CNV Gain Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649686 M 265 31 0 Samples from several populations that are part of the HapMap project. "" nsv471701 17 42866582 43053941 CNV Gain Sharp et al 2005 15918152 BAC_aCGH,FISH Eichler Segmental Duplication BAC array nssv549459,nssv549464,nssv549466,nssv549462,nssv549465,nssv549468,nssv549460,nssv549463,nssv549471,nssv549470,nssv549457,nssv549461,nssv549458,nssv549469,nssv549467 M 48 15 0 "" JK1051,JK1688,JK776,NA10469,NA10470,NA10471,NA10472,NA10473,NA10492,NA10493,NA10494,NA10495,NA17015,NA17052,P86GA dgv987e1 17 42875373 43119955 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv16714,essv14411,essv19693,essv17566,essv18214,essv8840,essv1883,essv11985,essv1265,essv11197,essv5486,essv10735,essv1760,essv539,essv12683,essv8629,essv12525,essv14635,essv14074,essv12595,essv7583,essv10952,essv8240,essv15023,essv12824,essv13584,essv9212,essv2041,esv355,essv9448,essv15751,essv10108,essv7083,essv11022,essv21835,essv7348,essv10237,essv13197,essv13773,essv16160,essv8156,essv14471,essv16915,essv11695,essv4605,essv17021,essv14333,essv4028,essv13733,essv13053,essv9930,essv9319,essv10551,essv11545,essv13902,essv13485,essv11890,essv8382,essv12974,essv9152,essv16304,essv18127,essv17138,essv12390,essv15332,essv7703,essv9755,essv14577,essv10848,essv10432,essv10020,essv16778,essv9091,essv15625,essv10269,essv17076,essv9680,essv12729,essv6735,essv16509,essv1121,essv22364,essv15985,essv7192,essv13575,essv14715,essv15806,essv11948,essv11176,essv17248,essv2252,essv10391,essv15531,essv3133,essv21295 M 271 0 0 "" NA10855,NA11839,NA11993,NA12057,NA12264,NA12762,NA12875,NA18500,NA18501,NA18502,NA18503,NA18505,NA18506,NA18507,NA18508,NA18515,NA18517,NA18523,NA18524,NA18537,NA18545,NA18547,NA18562,NA18570,NA18632,NA18633,NA18635,NA18852,NA18853,NA18854,NA18858,NA18859,NA18860,NA18861,NA18862,NA18863,NA18871,NA18872,NA18912,NA18913,NA18914,NA18949,NA18964,NA18966,NA18969,NA18976,NA18995,NA18997,NA18998,NA19093,NA19098,NA19099,NA19100,NA19102,NA19116,NA19119,NA19120,NA19127,NA19128,NA19129,NA19130,NA19131,NA19132,NA19142,NA19143,NA19144,NA19145,NA19152,NA19153,NA19154,NA19159,NA19160,NA19161,NA19171,NA19172,NA19173,NA19192,NA19194,NA19201,NA19202,NA19204,NA19205,NA19206,NA19207,NA19208,NA19209,NA19210,NA19211,NA19221,NA19222,NA19223,NA19238,NA19239,NA19240 nsv9566 17 42905585 42914286 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21130,nssv24556,nssv27064,nssv24834,nssv24314,nssv23426,nssv24401,nssv21155 M 31 8 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA10847,NA12740,NA12802,NA18552,NA18972,NA18980,NA19007 esv33689 17 42906958 43019574 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100561 S 51 0 1 "" 22298 nsv471513 17 42907079 43026438 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv547875,nssv547874,nssv547873 M 3 "" essv3532 17 42915095 43085418 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18965 nsv9567 17 42951158 42953007 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27074 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18972 nsv471403 17 42963443 43055641 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548181,nssv548180,nssv548182 M 3 "" nsv482203 17 42963443 43055641 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558564 S 1 1 0 "" KB1 nsv9568 17 42968660 43027772 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21649,nssv26975,nssv26520,nssv25534,nssv23940,nssv27130,nssv23134,nssv24763,nssv26015,nssv26322,nssv27457,nssv24340,nssv23502,nssv25310,nssv27132,nssv27465,nssv21619,nssv24427,nssv24048,nssv26506,nssv24668,nssv28325,nssv23162,nssv21185,nssv27084,nssv24642,nssv23625 M 31 14 12 Samples from several populations that are part of the HapMap project. "" NA10847,NA10863,NA12155,NA18502,NA18504,NA18517,NA18537,NA18552,NA18563,NA18572,NA18853,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19144,NA19173,NA19221,NA19240 nsv821688 17 42971395 42992601 CNV Gain Sebat_et_al_2004 15273396 ROMA Custom Nimblegen photoprint 85000 probe ROMA oligo array nssv1421326 S 31 1 0 "" nsv9570 17 43125872 43134790 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27170 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18502 nsv2071 17 43156502 43199228 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7330 S 9 0 1 "" NA12156 nsv507841 17 43168185 43174185 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617919 S 4 1 0 "" CHM nsv517880 17 43242950 43288340 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695288 S 2026 0 1 "" nsv518892 17 43242950 43384431 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696351 S 2026 0 1 "" nsv2072 17 43353636 43374625 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7331 S 9 0 1 "" NA12156 nsv469808 17 43404867 43583672 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649829 M 265 0 0 Samples from several populations that are part of the HapMap project. "" nsv527427 17 43425252 43426583 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703866 S 2026 1 0 "" nsv112217 17 43537710 43545092 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130795 M 24 "" nsv833469 17 43846848 44064405 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453553 S 95 0 1 "" dgv988e1 17 43957672 44191836 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv664,essv19288,essv22851 M 271 0 0 "" NA10838,NA12004 nsv112225 17 43972220 43972220 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130803 M 24 "" nsv833471 17 43972786 44138344 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453554 S 95 1 0 "" dgv369n27 17 43975401 44053709 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv457824,nsv457822 M 1557 0 2 "" NINDS_201,NINDS_210 essv21903 17 44093882 44118402 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA10838 nsv111938 17 44314280 44322796 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130516 M 24 "" nsv833472 17 44328201 44510742 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453555 S 95 1 0 "" nsv2073 17 44360632 44395064 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1374 S 9 1 0 "" NA19240 nsv482204 17 44390917 44400954 CNV Loss Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558565 S 1 0 1 "" KB1 dgv51n6 17 44392268 44392867 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv112294,nsv112437 M 24 "" nsv510716 17 44474889 44547064 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618948 S 4 0 1 "" NA10860 nsv2074 17 44640532 44666355 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6724 S 9 1 0 "" NA12156 nsv526307 17 44761912 44795419 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702590 S 2026 1 0 "" nsv2075 17 44763016 44788109 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7332 S 9 0 1 "" NA12156 nsv833473 17 44816026 44978287 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453558,nssv1453557,nssv1453556 M 95 1 2 "" nsv520484 17 44899152 44918120 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv671808,nssv678968 M 2026 2 0 "" nsv2078 17 44965761 45010486 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7333 S 9 0 1 "" NA12156 nsv525469 17 45136676 45152514 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701597 S 2026 1 0 "" nsv111821 17 45181826 45182888 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130399 M 24 "" nsv2079 17 45292480 45326517 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2969 S 9 1 0 "" NA18555 nsv833474 17 45294025 45526562 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453559 S 95 0 1 "" nsv509660 17 45452448 45515762 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623715 S 4 1 0 "" NA18994 nsv507842 17 45603929 45609929 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623224,nssv617920,nssv619185 M 4 3 0 "" CHM,NA10860,NA18994 nsv833475 17 45651880 45821193 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453560 S 95 0 1 "" nsv516463 17 45664873 45671871 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv672311,nssv668545 M 2026 0 2 "" nsv509661 17 45677932 45739460 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623716 S 4 1 0 "" NA18994 nsv510438 17 45741569 45747569 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624187 S 4 0 1 "" NA18994 nsv833476 17 45749357 45906345 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453561 S 95 0 1 "" nsv112280 17 45782538 45782921 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130858 M 24 "" nsv519530 17 45788957 45805535 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv657074,nssv686494,nssv656702 M 2026 0 3 "" nsv2080 17 45828120 45873207 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7334 S 9 0 1 "" NA12156 nsv2081 17 45887668 45932180 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2179 S 9 0 1 "" NA18555 nsv2082 17 45934075 45960448 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10126 S 9 1 0 "" NA18956 nsv833477 17 45949240 46110829 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453567,nssv1453562,nssv1453566,nssv1453564,nssv1453563,nssv1453568,nssv1453565,nssv1453572,nssv1453570,nssv1453569,nssv1453571,nssv1453573 M 95 0 12 "" nsv111976 17 45955070 45962857 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130554 M 24 "" dgv42n68 17 46016871 46255459 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH nsv833478,nsv833479 M 95 0 2 "" nsv111873 17 46020718 46020718 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130451 M 24 "" nsv111816 17 46020720 46020720 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130394 M 24 "" nsv2083 17 46062972 46077744 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1375 S 9 1 0 "" NA19240 nsv111922 17 46125721 46126489 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130500 M 24 "" nsv507843 17 46165485 46171485 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623225 S 4 1 0 "" NA18994 nsv112079 17 46313125 46313125 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130657 M 24 "" nsv112476 17 46315725 46315776 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv131054 M 24 "" nsv457825 17 46331231 46438527 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534945 S 1557 1 0 "" 1780854328_A nsv833480 17 46400485 46560339 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453576,nssv1453577,nssv1453578 M 95 0 3 "" nsv525470 17 46422762 46516580 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701598 S 2026 0 1 "" nsv520111 17 46783558 46803529 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv660830,nssv690521 M 2026 0 2 "" nsv2084 17 46827085 46872235 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7336 S 9 0 1 "" NA12156 dgv370n27 17 46849574 46910094 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv457826,nsv457827 M 1557 2 0 "" 1780862301_A,1780862584_A nsv516691 17 46849574 46910094 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv670190,nssv659558,nssv690888 M 2026 3 0 "" nsv2085 17 46854280 46886879 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6725 S 9 1 0 "" NA12156 nsv457830 17 46869866 46891150 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534949 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00241 nsv527842 17 46902697 46988478 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704340 S 2026 0 1 "" nsv519579 17 46964280 46988478 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696932 S 2026 0 1 "" nsv2086 17 47235979 47271164 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4274 S 9 1 0 "" NA12878 nsv833482 17 47283330 47476499 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453579 S 95 1 0 "" nsv507844 17 47328333 47334333 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619186 S 4 1 0 "" NA10860 nsv2087 17 47339861 47373394 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2970,nssv1376 M 9 2 0 "" NA18555,NA19240 nsv528447 17 47678520 48473172 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705043 S 2026 0 1 "" nsv2089 17 47784703 47817990 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2180 S 9 1 0 "" NA18555 nsv833483 17 47830616 48007499 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453580 S 95 1 0 "" nsv527898 17 47869418 48018354 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704402 S 2026 0 1 "" nsv522251 17 47885327 47893566 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694149 S 2026 1 0 "" nsv523399 17 47902899 47906495 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699150 S 2026 0 1 "" nsv528751 17 47902899 47912115 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705413 S 2026 0 1 "" nsv525382 17 47932943 48190536 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701504 S 2026 0 1 "" nsv521099 17 47983255 48018354 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv688717,nssv682260 M 2026 0 2 "" nsv509662 17 48005939 48033920 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623717,nssv619716,nssv621041,nssv618123 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv2090 17 48024502 48035145 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4275 S 9 1 0 "" NA12878 nsv510439 17 48123253 48129253 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624188,nssv618427,nssv621446 M 4 0 3 "" CHM,NA15510,NA18994 nsv523579 17 48306578 48668858 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699365 S 2026 0 1 "" dgv989e1 17 48369345 48627779 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv3303,essv4076,esv769 M 271 0 0 "" NA18635,NA18972 nsv457834 17 48382639 48457920 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534950 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01285 nsv9571 17 48390330 48424815 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27094 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18972 essv2963 17 48396906 48413228 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18972 nsv2091 17 48400884 48434530 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7337 S 9 1 0 "" NA12156 esv2422354 17 48493902 48661611 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161536 S 181 1 0 "" ND05370 nsv9572 17 48508969 48510731 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21581,nssv24694,nssv23530 M 31 0 3 Samples from several populations that are part of the HapMap project. "" NA12872,NA18975,NA18980 nsv519088 17 48513856 48523317 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696562 S 2026 0 1 "" nsv9573 17 48567066 48568376 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26339 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19240 nsv457835 17 48670836 48732019 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534951 S 1557 0 1 "" NINDS_94 nsv457837 17 48688258 48793944 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534952 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00226 nsv2092 17 48782357 48811692 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10127 S 9 0 1 "" NA18956 nsv524167 17 48836272 48848032 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700047 S 2026 0 1 "" nsv522401 17 48866443 48873035 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695183 S 2026 0 1 "" nsv833484 17 48987821 49168885 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453581 S 95 1 0 "" nsv521655 17 49002450 49004707 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698273 S 2026 0 1 "" nsv833485 17 49007306 49205759 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453582 S 95 0 1 "" nsv457844 17 49047083 49129918 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534954 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00963 nsv507845 17 49090431 49096431 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623226,nssv617921 M 4 2 0 "" CHM,NA18994 esv32932 17 49172701 49173047 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100109 S 51 0 1 "" 22086 nsv2093 17 49181728 49218641 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6726,nssv4276 M 9 0 2 "" NA12156,NA12878 esv33384 17 49204620 49211902 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97482,essv100905,essv101031,essv95659,essv93723,essv96208,essv99959,essv93421,essv99697 M 51 0 9 "" 21616,21656,21693,21841,21972,22007,22086,22128,22217 esv32590 17 49226591 49227308 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98663 S 51 0 1 "" 21606 nsv525511 17 49250421 49252775 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701644 S 2026 0 1 "" nsv457845 17 49264151 49331461 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534955 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00828 nsv833486 17 49380860 49574410 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453583 S 95 1 0 "" nsv2094 17 49444939 49478956 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1377 S 9 1 0 "" NA19240 nsv522309 17 49449022 49454833 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695089 S 2026 0 1 "" nsv517594 17 49452410 49454833 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv683379,nssv660685,nssv669377,nssv687934,nssv656570,nssv671936,nssv652463,nssv662198,nssv687291,nssv661744,nssv659896,nssv674505,nssv664030,nssv679726,nssv689020,nssv656801,nssv663241,nssv688069,nssv682905,nssv682348,nssv655587,nssv652658,nssv675792,nssv689503,nssv676053,nssv684048,nssv662926,nssv666822 M 2026 0 28 "" nsv507846 17 49485323 49491323 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617922 S 4 1 0 "" CHM nsv833487 17 49496217 49675287 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453586,nssv1453585,nssv1453584 M 95 3 0 "" esv32908 17 49515609 49525095 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98787,essv97573,essv100917,essv93742,essv96090,essv99909,essv93532,essv99569 M 51 8 0 "" 21606,21616,21693,21972,22007,22086,22128,22217 nsv457847 17 49554092 49650015 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534956 S 1557 0 1 "" 1780854496_A nsv833488 17 49694519 49819710 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453587 S 95 0 1 "" nsv457848 17 49782907 49899520 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534957 S 1557 0 1 "" 1780854462_A nsv2095 17 49865014 49900406 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4277 S 9 1 0 "" NA12878 nsv2096 17 49902764 49912087 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1378 S 9 1 0 "" NA19240 nsv2097 17 49913041 49948159 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4278 S 9 1 0 "" NA12878 nsv112335 17 49918421 49918421 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130913 M 24 "" nsv457849 17 49924305 49941907 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534958 S 1557 0 1 "" 1780862042_A nsv2098 17 49979148 50010749 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2181 S 9 1 0 "" NA18555 nsv507847 17 50007085 50013085 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619187,nssv617923 M 4 2 0 "" CHM,NA10860 nsv111680 17 50060176 50060225 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130258 M 24 "" nsv112471 17 50138868 50139541 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv131049 M 24 "" dgv180n21 17 50188330 50259525 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv525657,nsv525424 M 2026 0 2 "" nsv457850 17 50229929 50246036 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534959 S 1557 0 1 "" 1782681169_A nsv457852 17 50246036 50280501 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534961 S 1557 0 1 "" 1780862432_A nsv457853 17 50343231 50415108 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534962 S 1557 0 1 "" 1780854128_A nsv111920 17 50384915 50391090 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130498 M 24 "" nsv522299 17 50398768 50628909 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695080 S 2026 0 1 "" nsv515749 17 50415108 50455167 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv661016,nssv698314,nssv664671 M 2026 0 3 "" nsv833489 17 50461992 50669122 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453588 S 95 1 0 "" nsv2100 17 50847379 51683515 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10128 S 9 0 1 "" NA18956 nsv833490 17 50919972 50967481 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453589,nssv1453590 M 95 1 1 "" nsv2101 17 51021664 51054124 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4279 S 9 1 0 "" NA12878 nsv518015 17 51164164 51170595 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695427 S 2026 0 1 "" dgv181n21 17 51165836 51166997 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv521960,nsv526984 M 2026 0 2 "" nsv833491 17 51240195 51401294 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453591 S 95 1 0 "" nsv515953 17 51288952 51292323 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv677866,nssv665439,nssv682906,nssv681303 M 2026 0 4 "" nsv510717 17 51408269 51529074 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618949 S 4 0 1 "" NA10860 esv2751766 17 51503473 51522852 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6989412,essv6989914 M 771 0 1 "" BEC_774 dgv990e1 17 51506859 51535723 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv19354,essv9490,esv1047,essv720,essv21890,essv18792 M 271 0 0 "" NA06985,NA06991,NA12891,NA18940,NA19154 dgv991e1 17 51510198 51522852 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv18546,essv18456 M 271 0 0 "" NA11832,NA11993 dgv182n21 17 51513281 51537493 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv528216,nsv515819 M 2026 0 120 "" dgv371n27 17 51515464 51527276 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv457855,nsv457857,nsv457856 M 1557 0 3 "" HGDP00678,HGDP00807,HGDP01163 nsv817770 17 51515464 51527276 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416199,nssv1418203,nssv1415871,nssv1418192 M 112 0 4 "" NA06985,NA06991,NA11993,NA12891 nsv442422 17 51515913 51527586 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv132e55 17 51518046 51522852 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv34293,esv34313,esv2751767 M 771 0 3 "" BEC_57,NA06991,NA18871 esv34781 17 51518046 51534381 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6978557,essv6988015 M 771 0 1 "" NA11993 dgv992e1 17 51518243 51535723 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv8259,essv8021 M 271 0 0 "" NA18871,NA19153 nsv833493 17 51564019 51749272 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453592,nssv1453593 M 95 0 2 "" nsv2102 17 51628052 51660332 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5663 S 9 1 0 "" NA19129 nsv2103 17 51834885 51869439 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4280 S 9 1 0 "" NA12878 nsv833494 17 51899075 52078237 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453594 S 95 1 0 "" nsv525631 17 51943898 51951225 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701784 S 2026 0 1 "" nsv523095 17 51943898 51966496 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698787 S 2026 0 1 "" nsv833495 17 52107585 52294742 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453595 S 95 0 1 "" esv32884 17 52115894 52434492 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99932 S 51 0 1 "" 22086 nsv2104 17 52180745 52205025 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4281 S 9 1 0 "" NA12878 nsv524499 17 52326240 52331921 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700441 S 2026 0 1 "" nsv2105 17 52443666 52490415 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1380 S 9 0 1 "" NA19240 esv33941 17 52445066 53148466 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98834,essv101002,essv94048,essv101383,essv93002,essv101761,essv95860,essv92770,essv96634,essv100096,essv93213,essv99323,essv97770,essv100279,essv100364,essv98489,essv96351 M 51 0 17 "" 21606,21693,21802,21805,21863,21909,21911,21944,22011,22086,22170,22275,22278,22286,22300,22352,22371 nsv111740 17 52552211 52556883 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130318 M 24 "" nsv507848 17 52561349 52567349 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623227 S 4 1 0 "" NA18994 nsv519111 17 52655236 52664872 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694307 S 2026 0 1 "" nsv522539 17 52657724 52659851 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705917 S 2026 0 1 "" nsv2106 17 52663404 52696012 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5664 S 9 1 0 "" NA19129 esv2422464 17 52851727 52878314 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161506 S 181 1 0 "" ND04019 nsv833496 17 52856819 53048274 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453596,nssv1453597 M 95 2 0 "" nsv510718 17 52862434 52911279 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617430 S 4 0 1 "" CHM nsv2107 17 53096769 53122168 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7338 S 9 0 1 "" NA12156 dgv993e1 17 53175939 53180824 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1287,essv21083 M 271 0 0 "" NA10854 nsv833497 17 53361570 53540375 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453598 S 95 0 1 "" nsv2108 17 53545335 53579759 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1381 S 9 1 0 "" NA19240 nsv442423 17 53567511 53569097 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv517229 17 53608586 53805523 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv667567,nssv682228,nssv674773,nssv674976,nssv680169,nssv667942,nssv659500,nssv652341,nssv660831,nssv658324,nssv701447,nssv680741,nssv668727,nssv654003,nssv704365,nssv654917,nssv690266,nssv689455,nssv680965,nssv680794,nssv682131,nssv664609,nssv692802,nssv657584,nssv680291,nssv697255,nssv665168,nssv655934,nssv665838,nssv693433,nssv660434,nssv675226,nssv672622,nssv653731,nssv700838,nssv657001,nssv683646,nssv674163,nssv654995,nssv665559,nssv690239,nssv672375,nssv677729,nssv652241,nssv673340,nssv684354,nssv693743,nssv654885,nssv677489,nssv664549,nssv667284,nssv663673,nssv683280,nssv694286,nssv684594,nssv672588,nssv657075,nssv683076,nssv666077,nssv674533,nssv692892,nssv699582,nssv657495,nssv669272,nssv681595,nssv682261,nssv692916,nssv660933,nssv688551,nssv674746,nssv670957,nssv680997,nssv671372,nssv670001,nssv692000,nssv659743,nssv678298,nssv665899,nssv691451,nssv693034,nssv654755,nssv692937,nssv657661,nssv684985,nssv652172,nssv656781,nssv684099,nssv685731,nssv692376,nssv693334,nssv683780,nssv674198,nssv692685,nssv657811,nssv682323,nssv690759,nssv688522,nssv656919,nssv674410 M 2026 1 98 "" nsv457858 17 53612983 53645333 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534966 S 1557 0 1 "" 1780854491_A nsv509663 17 53695801 53777713 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621042 S 4 1 0 "" NA15510 nsv2109 17 53701822 53741738 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7339 S 9 0 1 "" NA12156 nsv457859 17 53738052 53751608 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534967 S 1557 0 1 "" 1780862081_A nsv457860 17 53743926 53772286 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534968 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00527 dgv994e1 17 53997375 54149948 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv15849,essv19984,esv420,essv4795,essv23494 M 271 0 0 "" NA07034,NA07048,NA18620,NA19223 nsv457863 17 54063018 54064116 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534970 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01028 nsv515871 17 54063018 54064116 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv669356,nssv698322,nssv693495,nssv672897,nssv665096,nssv687693,nssv670312,nssv661384,nssv686353,nssv655966,nssv657965,nssv663522 M 2026 0 12 "" nsv833498 17 54084423 54247391 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453599 S 95 0 1 "" nsv510719 17 54394135 54459211 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622722 S 4 0 1 "" NA18994 nsv833499 17 54425475 54643192 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453600 S 95 0 1 "" dgv995e1 17 54437361 54780416 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv16,essv10043 M 271 0 0 "" NA19099 nsv9574 17 54464205 54473521 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23190 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18942 nsv507849 17 54484911 54490911 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617924,nssv623228,nssv620616 M 4 3 0 "" CHM,NA15510,NA18994 nsv833500 17 54643700 54877132 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453602,nssv1453601 M 95 0 2 "" nsv9575 17 54718493 54720971 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26035,nssv24788,nssv21679,nssv24075,nssv27104 M 31 0 5 Samples from several populations that are part of the HapMap project. "" NA12155,NA18537,NA18563,NA18572,NA18972 esv33206 17 54719438 54719842 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv94726,essv101415,essv97900,essv93173,essv94594,essv92721,essv96114,essv94906,essv96500,essv97710,essv100485 M 51 11 0 "" 21791,21805,21837,21863,21932,21944,22007,22231,22261,22278,22298 nsv527058 17 54811074 54820686 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703435 S 2026 0 1 "" nsv833501 17 55060069 55211936 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453603 S 95 0 1 "" esv32651 17 55129820 55133214 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100739 S 51 0 1 "" 21656 nsv471702 17 55328115 55513938 CNV Gain Sharp et al 2005 15918152 BAC_aCGH,FISH Eichler Segmental Duplication BAC array nssv550671,nssv550670 M 48 2 0 "" NA10470,NA10471 nsv833502 17 55328115 55513938 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453605,nssv1453604 M 95 2 0 "" dgv996e1 17 55350429 55513944 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv8877,essv10473,essv10321,essv10563,essv565,essv16934,essv1742,essv16131,essv10257,essv16275,essv15777,essv15110,essv11118,essv14454,essv14579,essv9383,esv103,essv9937,essv11209,essv13916,essv11684,essv12994,essv14050,essv9769,essv12394,essv22380,essv11966,essv9175,essv9080,essv5480,essv16728,essv1139 M 271 0 0 "" NA12875,NA18506,NA18508,NA18515,NA18517,NA18632,NA18853,NA18854,NA18859,NA18861,NA18863,NA18964,NA18997,NA18998,NA19100,NA19128,NA19129,NA19131,NA19132,NA19142,NA19144,NA19145,NA19152,NA19154,NA19161,NA19201,NA19202,NA19204,NA19211,NA19238,NA19240 nsv471544 17 55354088 55388002 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv547964,nssv547962,nssv547963 M 3 "" nsv9576 17 55368278 55374573 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26356,nssv25557,nssv27180,nssv23653,nssv27172,nssv27473,nssv23967,nssv28327 M 31 7 1 Samples from several populations that are part of the HapMap project. "" NA10863,NA18502,NA18517,NA18853,NA18860,NA19144,NA19221,NA19240 nsv9577 17 55383216 55385299 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27114 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18972 nsv7295 17 55431923 55583777 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5666,nssv5665 M 9 0 0 "" NA19129 nsv9578 17 55434445 55466391 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24720,nssv27134,nssv27481,nssv27190,nssv28329,nssv26372,nssv27192,nssv24051,nssv25580,nssv23711,nssv23454,nssv24024,nssv27489,nssv26417,nssv27182,nssv26985,nssv27124,nssv26055 M 31 8 5 Samples from several populations that are part of the HapMap project. "" NA07029,NA10863,NA12155,NA18502,NA18517,NA18853,NA18860,NA18972,NA18980,NA19132,NA19144,NA19221,NA19240 nsv833504 17 55503143 55709933 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453606 S 95 1 0 "" nsv9579 17 55513299 55591671 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27005,nssv24078,nssv27497,nssv26074,nssv26447,nssv27200,nssv26995,nssv25603,nssv27202,nssv27174,nssv26432 M 31 8 1 Samples from several populations that are part of the HapMap project. "" NA12155,NA18502,NA18517,NA18853,NA18860,NA18972,NA19132,NA19144,NA19240 nsv527094 17 55560921 55595546 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703473 S 2026 0 1 "" nsv519766 17 55580548 55595546 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697038 S 2026 0 1 "" nsv528050 17 55581582 55595546 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704583 S 2026 1 0 "" nsv9581 17 55687363 55828979 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21709,nssv23739,nssv27184,nssv24746 M 31 0 4 Samples from several populations that are part of the HapMap project. "" NA10863,NA18572,NA18972,NA18980 nsv507850 17 55691613 55697613 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617925,nssv620617,nssv619188,nssv623229 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv519929 17 55743561 55863400 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697132 S 2026 0 1 "" nsv521420 17 55855046 55863400 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698030 S 2026 0 1 "" esv33904 17 56235759 56239609 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv94772 S 51 0 1 "" 21791 nsv2111 17 56620289 56650196 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7340 S 9 0 1 "" NA12156 dgv43n68 17 56678248 56917766 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH nsv833506,nsv833505 M 95 0 2 "" nsv2112 17 56735868 56747819 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2971 S 9 1 0 "" NA18555 nsv518130 17 56811371 56846063 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695548 S 2026 1 0 "" nsv519931 17 56846063 56869243 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697133 S 2026 0 1 "" nsv523855 17 56851020 56871616 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699690 S 2026 1 0 "" nsv516957 17 56869243 56871616 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv653334,nssv685486,nssv666671,nssv667943,nssv669151,nssv653503,nssv682262,nssv688552,nssv654694,nssv669556,nssv681892,nssv651816,nssv652243,nssv658381,nssv688334,nssv661145 M 2026 14 2 "" nsv2113 17 56890726 56922767 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6727 S 9 1 0 "" NA12156 nsv457864 17 56966823 57001546 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534971 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00580 nsv112179 17 57440180 57440460 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130757 M 24 "" nsv833507 17 57529441 57724323 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453609 S 95 0 1 "" nsv469887 17 57531461 57736681 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649908 M 265 5 1 Samples from several populations that are part of the HapMap project. "" nsv527199 17 57532286 57536565 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703598 S 2026 0 1 "" nsv518016 17 57627080 57675035 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695428 S 2026 0 1 "" nsv516367 17 57629843 57652778 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv684147,nssv667793 M 2026 0 2 "" nsv833508 17 57649463 57842003 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453611,nssv1453612,nssv1453610 M 95 2 1 "" dgv997e1 17 57650339 57826573 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv21249,essv8821,essv1867,essv10461,essv5481,essv1753,essv9190,essv2438,essv13131,essv12382,essv17230,essv7125,essv9878,essv15135,essv8246,essv14270,essv12777,essv10569,essv3087,essv8635,essv12600,essv16684,essv11016,essv584,essv9094,essv11268,essv7525,essv14428,essv10231,essv17050,essv12703,essv15773,essv16988,esv349,essv16513,essv9364,essv13922,essv8337,essv12989,essv11135,essv9131,essv16128,essv15338,essv18126,essv9832,essv10731,essv15639,essv9695,essv17170,essv13555,essv2026,essv16302,essv14493,essv21859,essv11915,essv11664,essv1140,essv15815,essv15504,essv14127,essv10313 M 271 0 0 "" NA10855,NA11839,NA11993,NA18502,NA18503,NA18505,NA18506,NA18508,NA18515,NA18523,NA18537,NA18545,NA18632,NA18853,NA18854,NA18858,NA18859,NA18860,NA18861,NA18862,NA18863,NA18912,NA18913,NA18914,NA18949,NA18964,NA18969,NA18976,NA18997,NA18998,NA18999,NA19098,NA19100,NA19102,NA19116,NA19120,NA19128,NA19129,NA19131,NA19132,NA19142,NA19143,NA19144,NA19145,NA19152,NA19154,NA19160,NA19161,NA19171,NA19172,NA19194,NA19201,NA19202,NA19204,NA19210,NA19211,NA19223,NA19238,NA19239,NA19240 nsv9582 17 57652052 57668349 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27045,nssv26461,nssv23766,nssv27212,nssv28331,nssv24105,nssv25626,nssv27535,nssv27210 M 31 8 1 Samples from several populations that are part of the HapMap project. "" NA10863,NA18502,NA18517,NA18853,NA18860,NA19132,NA19144,NA19221,NA19240 nsv523527 17 57652778 57675035 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699301 S 2026 0 1 "" nsv9583 17 57679509 57712918 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25335,nssv26534,nssv27222,nssv26475,nssv27220,nssv24813,nssv24131,nssv27543,nssv28363,nssv27055,nssv23793,nssv25649,nssv23218,nssv24771 M 31 13 1 Samples from several populations that are part of the HapMap project. "" NA10863,NA18502,NA18504,NA18517,NA18537,NA18853,NA18860,NA18942,NA18980,NA19132,NA19144,NA19173,NA19221,NA19240 nsv507851 17 57771193 57777193 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620618,nssv623230 M 4 2 0 "" NA15510,NA18994 nsv9584 17 57773553 57781313 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25012 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA11830 nsv516636 17 58005113 58015954 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv662833,nssv660104,nssv669771 M 2026 0 3 "" nsv509664 17 58036062 58130415 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623718 S 4 1 0 "" NA18994 nsv2114 17 58040493 58057661 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7342 S 9 1 0 "" NA12156 nsv516921 17 58094696 58200390 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701074,nssv663321,nssv705808,nssv654996,nssv699915,nssv705122,nssv679222,nssv676233,nssv697792 M 2026 1 8 "" nsv2115 17 58123904 58157946 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4282 S 9 1 0 "" NA12878 nsv509665 17 58153952 58237142 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621043 S 4 1 0 "" NA15510 nsv528785 17 58308456 58323238 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705452 S 2026 0 1 "" nsv457865 17 58369941 58467725 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534972 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00719 nsv526533 17 58405003 58414333 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702846 S 2026 1 0 "" nsv526079 17 58405003 58440805 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702323 S 2026 1 0 "" nsv523102 17 58409122 58426356 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698795 S 2026 1 0 "" nsv457866 17 58409122 58498812 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534973 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01330 nsv457867 17 58440805 58586210 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534974 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00647 nsv2116 17 58480953 58513480 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10129 S 9 1 0 "" NA18956 nsv112050 17 58526108 58526108 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130628 M 24 "" nsv833509 17 58580927 58798390 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453613,nssv1453615,nssv1453614 M 95 1 2 "" nsv525599 17 58911961 58913655 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701742 S 2026 0 1 "" nsv817771 17 58919763 58927493 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417318 S 112 0 1 "" NA18608 nsv507852 17 58975524 58981524 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617926,nssv623231,nssv619189,nssv620619 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv833510 17 59198385 59358882 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453616 S 95 0 1 "" nsv510720 17 59240443 59339872 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617431 S 4 0 1 "" CHM nsv517272 17 59245399 59451224 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv660158,nssv659422,nssv657138,nssv699804,nssv667944,nssv688483,nssv690286,nssv686445,nssv701764,nssv659744,nssv659897,nssv654177 M 2026 1 11 "" nsv833511 17 59297087 59495397 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453617 S 95 0 1 "" nsv111804 17 59307651 59315399 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130382 M 24 "" nsv2117 17 59562946 59607330 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4641 S 9 0 1 "" NA19129 nsv833512 17 59641842 59823300 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453618,nssv1453619 M 95 1 1 "" nsv524852 17 59646131 59760871 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700854 S 2026 1 0 "" nsv833513 17 59666458 59823300 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453620 S 95 0 1 "" nsv509666 17 59685547 59823323 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623719 S 4 1 0 "" NA18994 nsv511058 17 59685547 59823323 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621641 S 4 0 0 "" NA15510 nsv112578 17 59725660 59729432 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv131156 M 24 "" nsv2118 17 59771722 59807138 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4284,nssv2182 M 9 2 0 "" NA12878,NA18555 nsv507853 17 59795793 59801793 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617927,nssv619190 M 4 2 0 "" CHM,NA10860 nsv2119 17 59811608 59824314 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7343 S 9 1 0 "" NA12156 nsv2120 17 59880975 59892495 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5667 S 9 1 0 "" NA19129 nsv2122 17 60133617 60167687 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7344 S 9 1 0 "" NA12156 dgv44n68 17 60152895 60327536 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH nsv833515,nsv833516 M 95 0 20 "" nsv469875 17 60168350 60371564 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649896 M 265 0 39 Samples from several populations that are part of the HapMap project. "" nsv112551 17 60194606 60194656 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv131129 M 24 "" nsv471504 17 60211001 60346727 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv547855,nssv547854,nssv547857 M 3 "" dgv45n68 17 60217926 60412922 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH nsv833517,nsv833518 M 95 0 15 "" nsv9585 17 60268357 60360602 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25037,nssv24383,nssv23246,nssv25671,nssv21215,nssv26489,nssv24796,nssv23274,nssv21739,nssv24838,nssv27230,nssv23586,nssv24316,nssv23558,nssv24102,nssv26093,nssv21611,nssv28365,nssv24366 M 31 13 6 Samples from several populations that are part of the HapMap project. "" NA10839,NA10847,NA11830,NA12155,NA12872,NA18502,NA18537,NA18552,NA18563,NA18564,NA18572,NA18942,NA18975,NA18980,NA19144,NA19221,NA19240 esv33086 17 60347959 60348782 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101190,essv93847,essv101046,essv95106,essv94842,essv93172,essv101758,essv96206,essv93516,essv96560,essv99319,essv97621,essv100569 M 51 13 0 "" 21618,21634,21693,21721,21791,21863,21909,22007,22128,22261,22275,22278,22298 nsv528780 17 60428485 60432142 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705446 S 2026 0 1 "" nsv112105 17 60465291 60474901 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130683 M 24 "" nsv2123 17 60479939 60502601 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2972 S 9 1 0 "" NA18555 nsv112229 17 60525585 60535356 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130807 M 24 "" nsv527042 17 60553994 60558723 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703418 S 2026 0 1 "" nsv2124 17 60719392 60753195 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7345 S 9 1 0 "" NA12156 nsv2125 17 61053422 61085464 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5668 S 9 1 0 "" NA19129 nsv833519 17 61195430 61359639 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453657,nssv1453656,nssv1453660,nssv1453659,nssv1453658 M 95 2 3 "" nsv457868 17 61218655 61326533 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534975 S 1557 0 1 "" NINDS_147 nsv457869 17 61270012 61326533 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534976 S 1557 0 1 "" NINDS_241 nsv523470 17 61320518 61578821 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699229 S 2026 0 1 "" esv33092 17 61386980 61388280 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99782 S 51 0 1 "" 22086 nsv507854 17 61393410 61399410 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619191,nssv617928,nssv620620,nssv623232 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv457871 17 61465730 61524973 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534977 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00952 nsv510440 17 61513929 61519929 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618428 S 4 0 1 "" CHM nsv457878 17 61529007 61610860 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534979 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01238 nsv457880 17 61555793 61600257 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534980 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00007 nsv510721 17 61667479 61740220 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618950,nssv620103 M 4 0 2 "" NA10860,NA15510 nsv833520 17 61687756 61864837 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453661 S 95 1 0 "" nsv515667 17 61719099 61726150 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv664654,nssv684275,nssv682399,nssv695512,nssv680857,nssv670958,nssv669318,nssv668293,nssv693692,nssv664312,nssv668309,nssv667397,nssv665267,nssv658066 M 2026 1 13 "" nsv526542 17 61719099 61734255 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702856 S 2026 0 1 "" nsv523847 17 61734255 61753145 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699681 S 2026 0 1 "" nsv519825 17 61735096 61753145 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697071 S 2026 1 0 "" nsv457881 17 61839311 61862528 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534981 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00700 nsv457882 17 61841377 61902137 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534982 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01400 nsv457887 17 61841377 61948969 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534986 S 1557 0 1 "" 1782681117_A nsv528595 17 61966895 61967521 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705221 S 2026 0 1 "" nsv517904 17 61984799 62009907 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695315 S 2026 0 1 "" nsv2126 17 62058655 62079021 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10130,nssv4285 M 9 2 0 "" NA12878,NA18956 nsv510441 17 62076323 62082323 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618429 S 4 0 1 "" CHM nsv516184 17 62099506 62099806 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv667823,nssv666672 M 2026 0 2 "" nsv111836 17 62175537 62175696 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130414 M 24 "" nsv833521 17 62285480 62454197 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453664,nssv1453662,nssv1453663 M 95 0 3 "" nsv469731 17 62392932 62579144 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649752 M 265 0 3 Samples from several populations that are part of the HapMap project. "" nsv9586 17 62482048 62484983 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27232 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18517 nsv471703 17 62820088 62981367 CNV Gain Sharp et al 2005 15918152 BAC_aCGH,FISH Eichler Segmental Duplication BAC array nssv551221,nssv551224,nssv551229,nssv551226,nssv551223,nssv551228,nssv551225,nssv551222,nssv551227 M 48 9 0 "" NA10493,NA15724,NA15725,NA15726,NA15727,NA15732,NA15733,NA16688,NA17020 nsv527795 17 62847603 62862409 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704287 S 2026 0 1 "" nsv833522 17 62875936 63067191 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453666,nssv1453665 M 95 1 1 "" nsv2127 17 62914960 62946793 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1382 S 9 1 0 "" NA19240 nsv111730 17 62949252 62950071 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130308 M 24 "" nsv111972 17 62951317 62951646 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130550 M 24 "" nsv510722 17 63022299 63127963 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618951 S 4 0 1 "" NA10860 nsv112354 17 63109768 63114916 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130932 M 24 "" nsv511059 17 63140093 63298876 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622421 S 4 0 0 "" NA10860 nsv510442 17 63156645 63162645 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618430 S 4 0 1 "" CHM nsv507855 17 63200464 63206464 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617929 S 4 1 0 "" CHM nsv111983 17 63205382 63205667 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130561 M 24 "" nsv112009 17 63411224 63415901 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130587 M 24 "" nsv471405 17 63417679 63420227 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548185,nssv548183,nssv548184 M 3 "" nsv9587 17 63587668 63677919 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24409 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA10839 esv33825 17 63738745 63739158 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv96622,essv93579 M 51 1 1 "" 22011,22128 nsv833523 17 63854918 64022056 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453667 S 95 1 0 "" nsv522271 17 63987181 63989613 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695052 S 2026 0 1 "" nsv833524 17 64035625 64216789 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453668 S 95 1 0 "" nsv510723 17 64041263 64069020 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622723 S 4 0 1 "" NA18994 nsv507856 17 64043518 64049518 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617930 S 4 1 0 "" CHM nsv522126 17 64049834 64060052 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694900 S 2026 0 1 "" nsv521432 17 64164189 64172422 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698042 S 2026 1 0 "" nsv521300 17 64184833 64185387 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697907 S 2026 0 1 "" nsv522322 17 64185387 64194774 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695102 S 2026 0 1 "" nsv523831 17 64244733 64250500 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699662 S 2026 0 1 "" nsv526857 17 64299023 64301554 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703215 S 2026 0 1 "" nsv7296 17 64351723 64386607 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10131 S 9 0 0 "" NA18956 nsv833526 17 64492353 64648629 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453669 S 95 1 0 "" nsv2128 17 64642025 64676507 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4286 S 9 1 0 "" NA12878 nsv457888 17 64661568 64738238 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534987 S 1557 0 1 "" 1780862176_A nsv2129 17 64700255 64733873 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2973 S 9 1 0 "" NA18555 nsv516799 17 64721862 64743176 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv682084,nssv670999,nssv677274,nssv687866 M 2026 0 4 "" nsv833527 17 64752170 64912466 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453671,nssv1453670 M 95 1 1 "" nsv457890 17 64775934 64839401 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534988 S 1557 0 1 "" NINDS_95 nsv522420 17 64856953 64869168 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705773 S 2026 0 1 "" nsv112099 17 64914168 64914168 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130677 M 24 "" nsv2130 17 64921203 64953449 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10132 S 9 1 0 "" NA18956 nsv520649 17 64932028 64952406 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv687714,nssv673534,nssv701997 M 2026 0 3 "" nsv516319 17 65114184 65126171 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv661492,nssv667544,nssv703098,nssv657585,nssv683017 M 2026 4 1 "" nsv510724 17 65201314 65264008 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620104 S 4 0 1 "" NA15510 nsv516735 17 65251349 65269890 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv686993,nssv676549,nssv670535 M 2026 0 3 "" nsv112101 17 65347582 65347644 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130679 M 24 "" dgv998e1 17 65403530 65490775 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2432,esv495 M 271 0 0 "" NA18999 nsv521892 17 65406549 65469283 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694664 S 2026 0 1 "" nsv833528 17 65547048 65749094 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453672 S 95 0 1 "" nsv2131 17 65598518 65893913 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10977 S 9 0 1 "" NA15510 nsv526271 17 65618583 65627648 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702545 S 2026 0 1 "" nsv520048 17 65626554 65632401 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697195 S 2026 0 1 "" nsv111987 17 65671536 65671868 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130565 M 24 "" nsv457891 17 65715510 65733612 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534989 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01304 nsv457892 17 65724050 65733612 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534990 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00516 nsv2133 17 65849961 65878846 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2183,nssv10133,nssv4287 M 9 3 0 "" NA12878,NA18555,NA18956 nsv510725 17 65891559 65958973 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622724 S 4 0 1 "" NA18994 nsv2134 17 65950899 66012668 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10978,nssv2184,nssv6729,nssv5670 M 9 0 4 "" NA12156,NA15510,NA18555,NA19129 nsv510726 17 65961471 65974036 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622725,nssv620105,nssv617432,nssv618952 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv833529 17 66004374 66186087 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453673 S 95 1 0 "" nsv2135 17 66095452 66128351 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6730 S 9 1 0 "" NA12156 nsv516671 17 66340178 66361624 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv670067,nssv685774,nssv662834,nssv654931 M 2026 0 4 "" nsv457893 17 66454608 66522718 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534991 S 1557 1 0 "" NINDS_174 nsv526073 17 66615939 66617179 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702313 S 2026 0 1 "" nsv516815 17 66617179 66620348 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv671122,nssv672732,nssv658067,nssv693408,nssv681623 M 2026 0 5 "" nsv457894 17 66713406 66750867 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534992 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00638 nsv112055 17 66776271 66776271 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130633 M 24 "" nsv507857 17 66836310 66842310 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617931,nssv623233,nssv619192,nssv620621 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv457895 17 66838178 66882690 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534993 S 1557 0 1 "" 1798860114_A nsv111829 17 66846600 66846659 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130407 M 24 "" nsv111759 17 66851440 66857293 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130337 M 24 "" nsv457896 17 66872466 66899055 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534994 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00019 nsv112378 17 66988602 66996806 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130956 M 24 "" nsv2136 17 67157099 67188301 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6731 S 9 0 1 "" NA12156 nsv112579 17 67256170 67256223 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv131157 M 24 "" nsv111699 17 67363750 67364076 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130277 M 24 "" nsv112282 17 67436334 67436407 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130860 M 24 "" nsv833530 17 67541685 67740709 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453676,nssv1453675,nssv1453674 M 95 2 1 "" nsv833531 17 67701255 67859924 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453677 S 95 1 0 "" nsv520881 17 67726593 67758303 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697667 S 2026 1 0 "" nsv833532 17 67746245 67905909 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453678 S 95 0 1 "" nsv457898 17 67776374 67804357 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534996 S 1557 0 1 "" 1780854393_A nsv517799 17 67801683 67804357 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695202 S 2026 1 0 "" nsv833533 17 67849973 68017750 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453679 S 95 1 0 "" nsv517967 17 67879239 67882483 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695379 S 2026 0 1 "" nsv507858 17 67897508 67903508 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620622,nssv623234 M 4 2 0 "" NA15510,NA18994 nsv527550 17 67992695 68001836 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704011 S 2026 0 1 "" nsv528666 17 68168325 68169864 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705304 S 2026 0 1 "" nsv111666 17 68209598 68209598 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130244 M 24 "" nsv519333 17 68246282 68257187 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698810,nssv655470,nssv693189 M 2026 0 3 "" nsv517895 17 68269420 68501296 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695304 S 2026 0 1 "" nsv457899 17 68284502 68320680 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534997 S 1557 0 1 "" 1780862176_A nsv525813 17 68284502 68320680 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701998 S 2026 0 1 "" nsv524320 17 68285380 68293500 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700223 S 2026 1 0 "" nsv442424 17 68304153 68306056 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv509667 17 68346490 68372691 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618124,nssv619718,nssv621045 M 4 3 0 "" CHM,NA10860,NA15510 nsv511060 17 68346490 68399536 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624353 S 4 0 0 "" NA18994 nsv2137 17 68349209 68391836 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10979,nssv1383,nssv9968,nssv10134,nssv4288,nssv2185,nssv7346,nssv5672,nssv5671 M 9 8 0 "" NA12156,NA12878,NA15510,NA18507,NA18555,NA18956,NA19129,NA19240 nsv164 17 68361430 68390648 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv164 S 1 1 0 "" NA15510 nsv528252 17 68497256 68497686 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704818 S 2026 1 0 "" nsv509669 17 68520211 68577573 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623720 S 4 1 0 "" NA18994 nsv523221 17 68530900 68567461 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698943 S 2026 0 1 "" nsv519473 17 68565359 68567461 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv689421,nssv656304,nssv687261 M 2026 0 3 "" nsv528296 17 68609128 68613568 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704871 S 2026 0 1 "" nsv509670 17 68641641 68662859 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618125 S 4 1 0 "" CHM nsv833534 17 68663376 68857089 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453680 S 95 0 1 "" nsv112364 17 68700568 68700669 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130942 M 24 "" nsv2138 17 68742643 68777144 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2974 S 9 1 0 "" NA18555 nsv112220 17 68804740 68807188 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130798 M 24 "" nsv112181 17 68811406 68816772 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130759 M 24 "" nsv457900 17 68846855 68869405 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534998 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00553 dgv12e196 17 69182777 70073273 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array esv2422233,esv2422280 M 181 2 0 "" ND02258,ND04274 dgv999e1 17 69252400 69258719 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1352,essv7880 M 271 0 0 "" NA19140 nsv528478 17 69257546 69259700 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705081 S 2026 0 1 "" nsv442425 17 69257574 69259206 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv527318 17 69320932 69345596 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703743 S 2026 0 1 "" nsv527584 17 69323998 69324111 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704045 S 2026 0 1 "" nsv522548 17 69323998 69326645 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705929 S 2026 1 0 "" dgv372n27 17 69333750 70193536 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv457902,nsv457901 M 1557 2 0 "" NINDS_116,NINDS_131 nsv517569 17 69345596 70193536 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703507,nssv652394,nssv652821,nssv706041,nssv699066 M 2026 2 3 "" esv2751770 17 69345596 70223957 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6983346,essv6983347,essv6986405,essv6983348,essv6983349 M 771 1 0 "" BEC_641 nsv2139 17 69365641 69399419 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5673 S 9 1 0 "" NA19129 nsv833535 17 69419415 69634642 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453681 S 95 1 0 "" nsv509671 17 69489619 69539554 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621046 S 4 1 0 "" NA15510 nsv509672 17 69558184 69650397 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623721 S 4 1 0 "" NA18994 nsv509673 17 69674688 69936575 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623722,nssv623723 M 4 1 0 "" NA18994 nsv833538 17 69684458 69900085 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453682 S 95 1 0 "" nsv112547 17 69685403 69685497 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv131125 M 24 "" nsv833539 17 69760270 69945060 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453687,nssv1453686,nssv1453685,nssv1453684,nssv1453683 M 95 0 5 "" esv33995 17 69768787 70239827 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv95580 S 51 0 1 "" 21841 nsv2140 17 70145000 70187875 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7347 S 9 0 1 "" NA12156 nsv523611 17 70263258 70275393 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699405 S 2026 0 1 "" nsv457907 17 70285770 70326171 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535001 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00402 nsv518292 17 70318616 70490508 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695723 S 2026 0 1 "" nsv833540 17 70346705 70527055 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453688,nssv1453689 M 95 0 2 "" nsv519902 17 70348607 70362728 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv659423,nssv680704 M 2026 0 2 "" nsv457909 17 70397218 70490508 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535003 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01349 nsv112456 17 70551895 70552211 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv131034 M 24 "" nsv2141 17 70680597 70704486 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5674 S 9 0 1 "" NA19129 nsv510727 17 70767892 70839132 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622726 S 4 0 1 "" NA18994 nsv833541 17 70804880 70967699 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453693,nssv1453692,nssv1453691,nssv1453690 M 95 0 4 "" nsv111918 17 70806063 70806063 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130496 M 24 "" nsv111943 17 70824627 70827123 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130521 M 24 "" nsv516133 17 70928409 71270899 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701945,nssv657812,nssv670959,nssv666418,nssv663338,nssv685418,nssv669670,nssv656029,nssv694444,nssv682093,nssv697018,nssv687740,nssv654997 M 2026 0 13 "" nsv833542 17 70948719 71052669 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453694 S 95 0 1 "" nsv833543 17 71025280 71200424 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453695 S 95 0 1 "" dgv373n27 17 71093194 71112486 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv457911,nsv457910 M 1557 2 0 "" HGDP00984,HGDP01081 nsv833544 17 71103217 71279315 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453697,nssv1453696,nssv1453698 M 95 0 3 "" nsv817772 17 71232322 71257965 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417319 S 112 0 1 "" NA18608 nsv833545 17 71245816 71453607 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453699 S 95 1 0 "" nsv510728 17 71309198 71397649 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622727 S 4 0 1 "" NA18994 nsv833546 17 71510753 71694648 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453700 S 95 0 1 "" nsv817774 17 71514320 71520806 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417337 S 112 0 1 "" NA18609 nsv509674 17 71559873 71614112 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621047,nssv623724,nssv619719 M 4 3 0 "" NA10860,NA15510,NA18994 nsv2142 17 71577861 71595478 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4289 S 9 1 0 "" NA12878 nsv112544 17 71632001 71632001 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv131122 M 24 "" nsv2144 17 71649942 71675911 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1384 S 9 1 0 "" NA19240 nsv833547 17 71716175 71906903 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453702,nssv1453704,nssv1453701,nssv1453703 M 95 0 4 "" nsv527075 17 71822938 71842233 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703454 S 2026 1 0 "" nsv518967 17 71822938 71848140 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694293 S 2026 0 1 "" nsv2145 17 71870781 71916016 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5675 S 9 0 1 "" NA19129 nsv833549 17 71873120 72035567 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453705 S 95 1 0 "" nsv525148 17 71988773 72030895 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701218 S 2026 0 1 "" nsv520706 17 72105498 72108559 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694081 S 2026 0 1 "" nsv518385 17 72105498 72168755 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695816 S 2026 1 0 "" nsv528889 17 72154009 72173649 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705573 S 2026 0 1 "" nsv111859 17 72210537 72210537 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130437 M 24 "" nsv833550 17 72219715 72393967 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453707,nssv1453706 M 95 0 2 "" nsv457912 17 72345915 72388223 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535006 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00846 nsv510443 17 72428795 72434795 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621448,nssv622273,nssv618431 M 4 0 3 "" CHM,NA10860,NA15510 nsv521914 17 72457486 72457881 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694685 S 2026 0 1 "" nsv524066 17 72457486 72461821 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699934 S 2026 0 1 "" nsv112479 17 72499116 72499434 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv131057 M 24 "" nsv2146 17 72550200 72581765 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5676 S 9 1 0 "" NA19129 nsv2147 17 72628843 72663960 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1385 S 9 1 0 "" NA19240 dgv1000e1 17 72638503 72807003 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv13709,esv159 M 271 0 0 "" NA19119 nsv833551 17 72646598 72817361 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453708 S 95 1 0 "" nsv2148 17 72718292 72735763 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5677,nssv9327 M 9 2 0 "" NA18517,NA19129 nsv9588 17 72726533 72745448 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27242,nssv25693 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA18517,NA19144 nsv442426 17 72728774 72743351 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv457913 17 72729603 72762070 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535007 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00909 nsv833552 17 72734233 72921574 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453709 S 95 0 1 "" nsv2149 17 72742829 72753221 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5678 S 9 1 0 "" NA19129 nsv9589 17 72766351 72770203 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23482 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA07029 nsv517339 17 72777846 72790904 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv671000,nssv676147,nssv683433,nssv680553,nssv651774,nssv678375,nssv682199 M 2026 0 7 "" nsv457914 17 72820946 72856622 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535008 S 1557 0 1 "" 1782681080_A nsv525375 17 72842515 72844541 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701496 S 2026 0 1 "" nsv457915 17 72842515 72861556 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535009 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01173 nsv525851 17 72842515 72862467 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702045 S 2026 0 1 "" nsv111673 17 72859930 72863658 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130251 M 24 "" nsv2150 17 72918959 72952439 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7348 S 9 1 0 "" NA12156 nsv526477 17 73006992 73008055 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702784 S 2026 0 1 "" nsv833553 17 73020577 73183184 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453710 S 95 1 0 "" nsv510729 17 73031788 73132251 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622728 S 4 0 1 "" NA18994 nsv2151 17 73093099 73128014 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4290 S 9 1 0 "" NA12878 nsv520514 17 73153511 73157586 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv674605,nssv671966,nssv676657 M 2026 0 3 "" nsv2152 17 73219368 73252478 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5679 S 9 1 0 "" NA19129 nsv519159 17 73262825 73264564 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696639 S 2026 0 1 "" nsv516090 17 73264500 73264564 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv677151,nssv666125,nssv659480,nssv686950,nssv679498 M 2026 0 5 "" nsv518722 17 73370128 73373248 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696172 S 2026 0 1 "" nsv833554 17 73485102 73659590 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453711,nssv1453712 M 95 1 1 "" nsv112454 17 73499878 73500192 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv131032 M 24 "" nsv2153 17 73574296 73587248 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7350 S 9 0 1 "" NA12156 nsv515500 17 73628956 73647007 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv658972,nssv653335 M 2026 0 2 "" nsv524306 17 73691125 73788369 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700207 S 2026 1 0 "" nsv516327 17 73788369 73808867 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv667596,nssv661385,nssv684100,nssv674977,nssv705809,nssv682263,nssv693335 M 2026 0 7 "" nsv528790 17 73799302 73817208 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705460 S 2026 0 1 "" nsv833555 17 73864143 73968946 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453724,nssv1453744,nssv1453743,nssv1453742,nssv1453736,nssv1453745,nssv1453730,nssv1453749,nssv1453731,nssv1453733,nssv1453735,nssv1453732,nssv1453723,nssv1453748,nssv1453722,nssv1453747,nssv1453721,nssv1453746,nssv1453726,nssv1453725,nssv1453741,nssv1453729,nssv1453720,nssv1453738,nssv1453737,nssv1453734,nssv1453727,nssv1453740,nssv1453719,nssv1453739,nssv1453728,nssv1453718,nssv1453713,nssv1453715,nssv1453714,nssv1453717,nssv1453716 M 95 0 37 "" nsv524975 17 74007778 74033232 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701003 S 2026 0 1 "" nsv527452 17 74024594 74027315 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703893 S 2026 1 0 "" nsv521975 17 74024594 74030083 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694742 S 2026 1 0 "" nsv112223 17 74058021 74058021 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130801 M 24 "" nsv457916 17 74071972 74106726 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535010 S 1557 1 0 "" 1780862586_A nsv520357 17 74075906 74084911 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697370 S 2026 0 1 "" nsv515872 17 74089903 74170722 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv666236,nssv704461,nssv690344,nssv687580,nssv676658,nssv669338,nssv677528,nssv659984,nssv665097 M 2026 6 3 "" nsv519983 17 74222907 74279586 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697162 S 2026 1 0 "" nsv522366 17 74251445 74279586 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695146 S 2026 1 0 "" nsv520359 17 74290335 74296376 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697371 S 2026 0 1 "" nsv457917 17 74418948 74499358 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535011 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01333 nsv457918 17 74435021 74470354 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535012 S 1557 0 1 "" NINDS_61 nsv523650 17 74441474 74673240 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699451 S 2026 0 1 "" nsv2155 17 74453212 74487621 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4291 S 9 1 0 "" NA12878 nsv518775 17 74468926 74470354 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696226 S 2026 0 1 "" nsv521186 17 74544687 74557017 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv684101,nssv689972 M 2026 0 2 "" nsv833556 17 74545568 74729151 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453750,nssv1453751,nssv1453755,nssv1453753,nssv1453754,nssv1453752 M 95 0 6 "" nsv2156 17 74547156 74571779 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9969 S 9 0 1 "" NA18507 nsv2157 17 74582573 74613381 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6732 S 9 1 0 "" NA12156 nsv524700 17 74593383 74607772 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700680 S 2026 0 1 "" nsv527899 17 74593383 74673240 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704403 S 2026 0 1 "" nsv833557 17 74607557 74789722 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453756,nssv1453757 M 95 0 2 "" nsv112361 17 74646369 74646369 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130939 M 24 "" nsv817775 17 74650744 74662402 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417521 S 112 0 1 "" NA18968 nsv522632 17 74651557 74657392 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv706030 S 2026 0 1 "" nsv527021 17 74703613 74746266 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703396 S 2026 0 1 "" dgv1001e1 17 74743681 74774728 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv19312,esv1080 M 271 0 0 "" NA07022 nsv833558 17 74744878 74959077 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453759,nssv1453758 M 95 0 2 "" essv17993 17 74754058 74774728 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12005 nsv528997 17 74773715 74779109 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705702 S 2026 0 1 "" nsv529010 17 74775597 74787673 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705720 S 2026 1 0 "" nsv518325 17 74838408 74843754 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695755 S 2026 0 1 "" nsv833560 17 74849624 75033343 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453764,nssv1453763,nssv1453762,nssv1453761,nssv1453760 M 95 0 5 "" nsv517744 17 74868289 74905632 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv671999,nssv653080,nssv656093,nssv663422,nssv666192,nssv657872,nssv673004,nssv655502,nssv681251,nssv685267,nssv678392,nssv696554,nssv683921,nssv669212,nssv662248,nssv689240,nssv666237 M 2026 16 1 "" nsv457924 17 74875302 74915689 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535014 S 1557 1 0 "" 1780862432_A nsv527752 17 74875302 74946181 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704238 S 2026 1 0 "" nsv817776 17 74876674 74905197 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415873 S 112 1 0 "" NA11992 dgv374n27 17 74876674 74907220 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv457947,nsv457951,nsv457939,nsv457942,nsv457961,nsv457953,nsv457944,nsv457948,nsv457964,nsv457932,nsv457928,nsv457925,nsv457929,nsv457926,nsv457958,nsv457931,nsv457935,nsv457946,nsv457927,nsv457965,nsv457949,nsv457938,nsv457962,nsv457934,nsv457945,nsv457943,nsv457933,nsv457937,nsv457950,nsv457960,nsv457940,nsv457936,nsv457959 M 1557 33 0 "" 1780854128_A,1780854336_A,1780854486_A,1780854511_A,1780854599_A,1780862195_A,1780862390_A,1780862435_A,1780862530_A,1782681110_A,1782681195_A,1782681316_A,1787431197_A,1788485381_A,1798860186_A,HGDP00586,HGDP00599,HGDP00642,HGDP00645,HGDP00678,HGDP00726,HGDP00732,HGDP00735,HGDP01063,HGDP01065,HGDP01076,HGDP01153,HGDP01255,HGDP01280,NINDS_101,NINDS_190,NINDS_256,NINDS_99 nsv442427 17 74879746 74900069 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv457966 17 74930223 74954948 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535052 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01303 nsv9590 17 74991853 75033127 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27551,nssv28367,nssv24435,nssv25360,nssv26503 M 31 1 4 Samples from several populations that are part of the HapMap project. "" NA10839,NA18860,NA19173,NA19221,NA19240 nsv112374 17 74992191 74992278 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130952 M 24 "" esv33693 17 75047370 75048961 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93236 S 51 1 0 "" 22170 nsv9592 17 75223385 75225810 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21160,nssv25385,nssv23845,nssv27559,nssv26517,nssv24461 M 31 0 6 Samples from several populations that are part of the HapMap project. "" NA07048,NA10839,NA12802,NA18860,NA19173,NA19240 nsv9593 17 75252336 75270348 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28369 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19221 nsv9594 17 75294537 75306490 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23302,nssv26531 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA18942,NA19240 nsv469865 17 75358742 75546172 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649886 M 265 0 2 Samples from several populations that are part of the HapMap project. "" esv33969 17 75365893 75368981 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98240,essv94790,essv93995,essv101409,essv97937,essv95652,essv95483,essv93144,essv95400,essv97403,essv94630,essv92723,essv93707,essv97200,essv96038,essv93543,essv93276,essv99701,essv95033,essv99299,essv97752,essv100140,essv100409 M 51 22 1 "" 21772,21791,21802,21805,21837,21841,21847,21863,21872,21879,21932,21944,21972,22075,22127,22128,22170,22217,22231,22275,22278,22286,22300 nsv111891 17 75467980 75468263 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130469 M 24 "" dgv183n21 17 75477911 75486138 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv526017,nsv526563 M 2026 0 2 "" nsv9595 17 75502474 75504797 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24859 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA12740 nsv520743 17 75547666 75555232 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv674902,nssv689647,nssv687521 M 2026 3 0 "" nsv833561 17 75566340 75755445 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453765,nssv1453766 M 95 0 2 "" nsv527410 17 75590730 75612284 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703848 S 2026 0 1 "" nsv517686 17 75597441 75612284 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv663523,nssv680933,nssv660734,nssv690446,nssv688262,nssv667087,nssv682596,nssv675726,nssv683616,nssv677867,nssv653024,nssv677919,nssv652837,nssv674437,nssv658671,nssv654320,nssv667524,nssv671473,nssv685294,nssv659532,nssv687581,nssv691480,nssv656396,nssv672921,nssv656435,nssv677529,nssv685094,nssv658932,nssv666648,nssv663212,nssv689505,nssv666873,nssv672898,nssv693164,nssv675932,nssv690399 M 2026 0 36 "" nsv469591 17 75673716 75881880 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649706 M 265 0 31 Samples from several populations that are part of the HapMap project. "" nsv9596 17 75701401 75706415 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23614,nssv24129,nssv27194 M 31 3 0 Samples from several populations that are part of the HapMap project. "" NA18563,NA18972,NA18975 nsv833562 17 75702917 75889734 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453767 S 95 0 1 "" dgv1002e1 17 75752791 75790078 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv7660,esv1279 M 271 0 0 "" NA18632 esv34722 17 75758600 75780106 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6979791,essv6986945,essv6990408 M 771 1 0 "" NA18632 nsv457968 17 75793488 75881354 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535053 S 1557 0 1 "" 1780854080_A nsv2158 17 75892709 75937915 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7351 S 9 0 1 "" NA12156 nsv524479 17 76022586 76082006 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700417 S 2026 0 1 "" nsv526291 17 76034556 76043498 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702572 S 2026 0 1 "" nsv523005 17 76141122 76173006 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698677 S 2026 0 1 "" nsv833563 17 76194331 76402137 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453768 S 95 1 0 "" nsv112123 17 76253865 76253959 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130701 M 24 "" nsv524591 17 76303498 76306599 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700550 S 2026 0 1 "" nsv2159 17 76323766 76362867 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6733 S 9 0 1 "" NA12156 nsv509675 17 76328493 76394967 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623725 S 4 1 0 "" NA18994 nsv510730 17 76402173 76406716 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622729 S 4 0 1 "" NA18994 nsv509676 17 76453155 76524914 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619720 S 4 1 0 "" NA10860 nsv112141 17 76506794 76506847 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130719 M 24 "" nsv457969 17 76509109 76534515 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535054 S 1557 0 1 "" NINDS_22 nsv457970 17 76509748 76565772 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535055 S 1557 1 0 "" 1788485381_A nsv112459 17 76539639 76539639 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv131037 M 24 "" nsv526008 17 76554452 76559732 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702236 S 2026 0 1 "" nsv2160 17 76592776 76606136 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5682 S 9 1 0 "" NA19129 nsv833564 17 76603108 76752449 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453779,nssv1453770,nssv1453773,nssv1453769,nssv1453771,nssv1453772,nssv1453778,nssv1453777,nssv1453776,nssv1453775,nssv1453780,nssv1453781,nssv1453774 M 95 0 13 "" nsv112250 17 76643979 76650702 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130828 M 24 "" nsv523417 17 76704185 76752666 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699169 S 2026 1 0 "" dgv46n68 17 76722316 76877327 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH nsv833566,nsv833565 M 95 0 32 "" dgv1003e1 17 76741026 76933757 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv15235,essv10207,essv14611,essv16524,esv295,essv2450,essv1472,essv7545,essv4587 M 271 0 0 "" NA18524,NA18545,NA18944,NA18999,NA19093,NA19094,NA19152,NA19210 nsv9597 17 76778846 76787233 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28371 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19221 nsv457971 17 76805157 76871369 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535056 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00814 nsv509677 17 76815534 76855704 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619721 S 4 1 0 "" NA10860 nsv2161 17 76826476 76870479 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10135,nssv5683 M 9 2 0 "" NA18956,NA19129 nsv9598 17 76912973 76917686 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23820 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA10863 nsv2162 17 76986304 76987009 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1386 S 9 1 0 "" NA19240 nsv457973 17 76995142 77108300 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535057 S 1557 0 1 "" 1780862304_A nsv2163 17 77000524 77027861 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4292,nssv6734,nssv1387,nssv10137,nssv2186,nssv9548,nssv10980,nssv5684 M 9 8 0 "" NA12156,NA12878,NA15510,NA18507,NA18555,NA18956,NA19129,NA19240 nsv165 17 77000543 77019553 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv165 S 1 1 0 "" NA15510 nsv112176 17 77070055 77070109 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130754 M 24 "" nsv833567 17 77073553 77154421 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453828,nssv1453823,nssv1453819,nssv1453822,nssv1453818,nssv1453817,nssv1453820,nssv1453821,nssv1453824,nssv1453827,nssv1453826,nssv1453825,nssv1453816,nssv1453830,nssv1453829,nssv1453815,nssv1453814 M 95 0 17 "" nsv833568 17 77073553 77213226 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453833,nssv1453835,nssv1453832,nssv1453834,nssv1453831 M 95 0 5 "" nsv2164 17 77109841 77143492 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4294 S 9 1 0 "" NA12878 nsv833569 17 77390101 77562577 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453842,nssv1453837,nssv1453849,nssv1453841,nssv1453839,nssv1453836,nssv1453838,nssv1453840,nssv1453843,nssv1453846,nssv1453848,nssv1453845,nssv1453844,nssv1453847 M 95 0 14 "" esv33475 17 77422720 77442707 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100733,essv97967 M 51 1 1 "" 21656,21837 esv33468 17 77442707 77478923 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv94467 S 51 0 1 "" 21808 nsv833571 17 77464559 77531108 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453851,nssv1453850,nssv1453853,nssv1453852,nssv1453854 M 95 0 5 "" esv32874 17 77478923 77503400 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv95173 S 51 0 1 "" 21721 nsv457975 17 77542520 77638015 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535059 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00546 nsv457976 17 77586501 77727682 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535060 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00908 nsv112507 17 77673576 77673576 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv131085 M 24 "" nsv112197 17 77713719 77713834 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130775 M 24 "" nsv112226 17 77750173 77750642 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130804 M 24 "" nsv833572 17 77756142 77940000 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453855,nssv1453858,nssv1453859,nssv1453857,nssv1453861,nssv1453860,nssv1453862,nssv1453856 M 95 0 8 "" nsv2166 17 77763457 77790137 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4295 S 9 1 0 "" NA12878 nsv111744 17 77778735 77778800 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130322 M 24 "" nsv112264 17 77778787 77778855 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130842 M 24 "" nsv469561 17 77802313 78023439 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649673 M 265 0 0 Samples from several populations that are part of the HapMap project. "" nsv833573 17 77826218 77957348 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453863 S 95 0 1 "" nsv112382 17 77912492 77912601 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130960 M 24 "" nsv112498 17 77963194 77963301 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv131076 M 24 "" nsv833574 17 77970219 78130419 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453864 S 95 1 0 "" nsv509678 17 78105417 78151688 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619722 S 4 1 0 "" NA10860 nsv2167 17 78111090 78153104 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10982,nssv4296,nssv9971,nssv10138,nssv5685,nssv6735 M 9 6 0 "" NA12156,NA12878,NA15510,NA18507,NA18956,NA19129 nsv166 17 78122582 78151657 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv166 S 1 1 0 "" NA15510 nsv112341 17 78165495 78165566 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130919 M 24 "" nsv833575 17 78212041 78398677 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453865,nssv1453866 M 95 0 2 "" nsv509680 17 78212478 78230761 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618126 S 4 1 0 "" CHM nsv833576 17 78320327 78398677 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453867 S 95 1 0 "" nsv2168 17 78339493 78372274 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5686 S 9 1 0 "" NA19129 nsv112068 17 78477069 78477242 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130646 M 24 "" nsv529032 17 78498133 78514318 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705743 S 2026 0 1 "" nsv112402 17 78523849 78524004 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130980 M 24 "" nsv817777 17 78560778 78579829 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417206 S 112 0 1 "" NA18558 nsv111962 17 78563030 78563221 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130540 M 24 "" nsv112440 17 78563299 78563490 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv131018 M 24 "" nsv112308 17 78604001 78604204 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130886 M 24 "" nsv529045 17 78609338 78634366 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705761 S 2026 0 1 "" nsv522768 17 78618682 78634366 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698409 S 2026 0 1 "" nsv111986 17 78623208 78623265 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv130564 M 24 "" nsv9599 18 1 58441 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24453 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19007 nsv442428 18 38133 68539 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv2173 18 133622 142558 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1389 S 9 1 0 "" NA19240 nsv518642 18 186829 321506 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696092 S 2026 1 0 "" nsv2174 18 230074 275087 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7353 S 9 0 1 "" NA12156 nsv2175 18 264272 298896 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2975 S 9 1 0 "" NA18555 nsv437819 18 276971 302577 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467700 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19145 dgv1004e1 18 277648 297134 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv14678,essv13504 M 271 0 0 "" NA18914,NA19145 dgv1005e1 18 277648 306558 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv8678,esv1214 M 271 0 0 "" NA18912 nsv457977 18 279153 397958 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535061 S 1557 1 0 "" 1780862457_A nsv517057 18 283519 292224 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv680468,nssv681192,nssv670119,nssv699637,nssv658013,nssv680742,nssv665358,nssv668547,nssv680263,nssv655840,nssv685295,nssv691420,nssv657298,nssv653859,nssv704088,nssv653701,nssv656511,nssv658716,nssv684022,nssv662814,nssv687883,nssv666898,nssv662963,nssv693496,nssv661068,nssv666435,nssv667748,nssv684753,nssv665414,nssv669319,nssv681624,nssv655085 M 2026 0 32 "" nsv817778 18 283519 292224 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418221,nssv1418222 M 112 0 2 "" NA19143,NA19145 nsv523438 18 283519 309176 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699194 S 2026 0 1 "" nsv442429 18 283522 294262 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv9600 18 305966 308389 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23642,nssv27204 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA18972,NA18975 nsv517980 18 324742 328132 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695392 S 2026 0 1 "" nsv2177 18 336361 368242 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4301 S 9 1 0 "" NA12878 nsv522804 18 372088 384946 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698449 S 2026 0 1 "" nsv510444 18 448226 454226 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624189,nssv618432 M 4 0 2 "" CHM,NA18994 nsv528515 18 495004 495472 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705123 S 2026 0 1 "" nsv833577 18 511331 715019 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453869,nssv1453868,nssv1453871,nssv1453877,nssv1453870,nssv1453872,nssv1453876,nssv1453874,nssv1453873,nssv1453875,nssv1453882,nssv1453879,nssv1453878,nssv1453880,nssv1453881 M 95 14 1 "" nsv510731 18 524693 551718 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618953 S 4 0 1 "" NA10860 nsv528169 18 541688 2230220 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704718 S 2026 0 1 "" nsv510445 18 543671 549671 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624190 S 4 0 1 "" NA18994 nsv131524 18 623828 623883 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150102 M 24 "" dgv1006e1 18 667302 695598 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv3251,esv1114 M 271 0 0 "" NA18967 nsv527894 18 688312 693442 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704397 S 2026 0 1 "" nsv523729 18 693442 702037 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699545 S 2026 0 1 "" nsv131646 18 702350 702403 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150224 M 24 "" nsv522339 18 834449 882467 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695119 S 2026 1 0 "" nsv131668 18 844880 844880 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150246 M 24 "" nsv525998 18 852169 872510 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702223 S 2026 0 1 "" nsv2178 18 858312 878328 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10144 S 9 1 0 "" NA18956 nsv518677 18 885555 897710 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696126 S 2026 0 1 "" nsv517252 18 892328 900635 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv657497,nssv686020,nssv687522,nssv673398,nssv691982,nssv666078,nssv674164,nssv684690,nssv691307,nssv661018,nssv679898,nssv671206,nssv676857,nssv682292,nssv671053,nssv664283,nssv651939,nssv687637,nssv669933,nssv662099,nssv670611,nssv657097,nssv667400,nssv652867,nssv674679,nssv675228,nssv652309,nssv678475,nssv654756,nssv670475,nssv658413,nssv667619,nssv654073,nssv671522,nssv679405,nssv655935,nssv677920,nssv674560,nssv664430,nssv674092,nssv657787,nssv676686,nssv678597,nssv680707,nssv687935,nssv657140,nssv663281,nssv689287,nssv677730,nssv692751,nssv670960,nssv674534,nssv680795,nssv679469,nssv659357,nssv661146,nssv677768,nssv672177,nssv689039,nssv664822,nssv657689,nssv667003,nssv673993,nssv652896,nssv677695,nssv673026,nssv652173,nssv662642,nssv683858,nssv687068,nssv665901,nssv667571,nssv655690,nssv684596,nssv679776,nssv682325,nssv666514,nssv653753,nssv694010,nssv683341,nssv693802,nssv678752,nssv682561,nssv661838,nssv662407,nssv688336,nssv682598,nssv660867,nssv687025,nssv656211,nssv682229,nssv669273,nssv657842,nssv674199,nssv692893,nssv673342,nssv669581,nssv680968,nssv674411,nssv672660,nssv665866,nssv669597,nssv659745,nssv672763,nssv685419 M 2026 0 105 "" nsv833578 18 905710 1076135 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453883 S 95 1 0 "" nsv2179 18 1011735 1056543 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7354 S 9 0 1 "" NA12156 nsv130609 18 1209390 1209444 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149187 M 24 "" nsv130620 18 1209454 1209508 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149198 M 24 "" nsv527644 18 1456512 1457944 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704115 S 2026 0 1 "" nsv2180 18 1527213 1572099 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7355 S 9 0 1 "" NA12156 nsv528181 18 1564274 1567409 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704731 S 2026 0 1 "" nsv527043 18 1573633 1574082 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703419 S 2026 0 1 "" esv2751772 18 1668746 1853989 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6989538,essv6989270,essv6981894,essv6981895 M 771 0 1 "" BEC_5 dgv133e55 18 1703347 1824650 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv2751774,esv2751773 M 771 0 2 "" BEC_360,BEC_448 nsv457982 18 1708332 1750084 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535062 S 1557 0 1 "" NINDS_189 nsv131670 18 1711055 1711126 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150248 M 24 "" nsv132036 18 1711189 1711257 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150614 M 24 "" dgv375n27 18 1721154 1829387 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv457984,nsv457983,nsv457986 M 1557 0 3 "" HGDP01384,HGDP01402,NINDS_62 nsv515908 18 1721154 1829387 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv661467,nssv667639,nssv684488,nssv702217,nssv657885,nssv665246,nssv687664,nssv676777,nssv688422,nssv667498,nssv683018 M 2026 0 11 "" nsv833579 18 1734202 1904419 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453884 S 95 1 0 "" esv2422300 18 1753379 1840254 CNV Deletion Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161503 S 181 0 1 "" ND03938 nsv457990 18 1764157 1818189 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535067 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00611 nsv131201 18 1810321 1810321 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149779 M 24 "" nsv2181 18 1825566 1832005 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1390,nssv6741 M 9 2 0 "" NA12156,NA19240 esv2751775 18 1887930 1997871 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6983543,essv6989809 M 771 0 1 "" BEC_667 dgv376n27 18 1903316 1970668 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv457999,nsv457998,nsv457993,nsv457995,nsv458000,nsv457992,nsv457991,nsv457994 M 1557 0 8 "" 1780846320_A,1780854464_A,1780854522_A,1780854540_A,HGDP01373,NINDS_117,NINDS_132,NINDS_209 nsv517531 18 1903316 1970668 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv679519,nssv652283,nssv688909,nssv681576,nssv685942,nssv655261,nssv694142,nssv681280,nssv663599,nssv655903,nssv676583,nssv665012,nssv685016,nssv655812,nssv667618,nssv688955,nssv678321,nssv668130,nssv691607,nssv685244,nssv680817,nssv673991,nssv661928,nssv661515,nssv689648,nssv662682,nssv680966,nssv682370,nssv669685 M 2026 0 29 "" nsv438275 18 1907900 1922838 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470686,nssv470687 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA18612,NA18635 nsv2182 18 1909888 1943485 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2976 S 9 1 0 "" NA18555 nsv2183 18 1955951 1990972 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1391 S 9 1 0 "" NA19240 dgv377n27 18 1962346 2065915 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv458009,nsv458010 M 1557 2 0 "" HGDP00472,HGDP01094 nsv521845 18 1964966 2011735 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694619 S 2026 0 1 "" nsv833580 18 2096453 2285346 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453885 S 95 0 1 "" nsv2184 18 2326651 2353219 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2977 S 9 1 0 "" NA18555 nsv520081 18 2380802 2381697 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697214 S 2026 0 1 "" nsv2185 18 2384019 2427903 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7356 S 9 0 1 "" NA12156 nsv458012 18 2402278 2437965 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535081 S 1557 0 1 "" 1780854255_A nsv130573 18 2462725 2462838 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149151 M 24 "" nsv2186 18 2466222 2499389 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7357 S 9 1 0 "" NA12156 nsv132209 18 2555289 2556061 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150787 M 24 "" nsv131902 18 2604443 2604640 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150480 M 24 "" nsv2189 18 2890694 2935703 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7359 S 9 0 1 "" NA12156 nsv131766 18 3093002 3093002 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150344 M 24 "" nsv509681 18 3098405 3104722 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621048,nssv619723 M 4 2 0 "" NA10860,NA15510 nsv458013 18 3178976 3206302 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535082 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00637 nsv131953 18 3262301 3262301 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150531 M 24 "" nsv131161 18 3308056 3308128 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149739 M 24 "" nsv132111 18 3312428 3313286 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150689 M 24 "" nsv2190 18 3398992 3432000 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1392 S 9 1 0 "" NA19240 nsv527676 18 3435826 3442978 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704151 S 2026 0 1 "" nsv516490 18 3438762 3441762 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv668672,nssv663700 M 2026 0 2 "" dgv52n6 18 3492644 3498568 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv130703,nsv130606 M 24 "" dgv184n21 18 3516775 5920979 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv521255,nsv521876 M 2026 2 0 "" nsv516032 18 3559620 3561217 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv682463,nssv654777,nssv665823,nssv693512,nssv685758,nssv666453,nssv705273,nssv679141,nssv675856,nssv691554,nssv693761,nssv667318,nssv672483,nssv685180 M 2026 0 14 "" nsv817779 18 3559620 3561217 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417451,nssv1417550 M 112 0 2 "" NA18953,NA18971 nsv517856 18 3569850 3570742 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695260 S 2026 0 1 "" dgv1007e1 18 3667422 4160252 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv741,essv18063,essv18324 M 271 0 0 "" NA10846,NA12145 nsv523341 18 3710081 3713036 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699088 S 2026 0 1 "" nsv458014 18 3738286 3791031 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535083 S 1557 0 1 "" 1780854081_A nsv833582 18 3752990 3921071 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453886 S 95 0 1 "" dgv134e55 18 3783886 4096164 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv34571,esv34574 M 771 2 0 "" NA10846,NA12145 dgv1008e1 18 3784119 4112410 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv20859,essv24635 M 271 0 0 "" NA10846,NA12145 nsv525905 18 3810050 3814077 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702109 S 2026 0 1 "" nsv438276 18 3815114 3820892 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470688,nssv470689 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA10846,NA12145 nsv131465 18 3823131 3823182 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150043 M 24 "" nsv2191 18 3866907 3909812 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7360 S 9 0 1 "" NA12156 nsv9601 18 3977018 3981223 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27214 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18972 nsv131065 18 3987032 3987488 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149643 M 24 "" nsv9603 18 3998420 4000770 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24487 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA10839 nsv520546 18 4147759 4154167 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv684276,nssv682597,nssv672417 M 2026 0 3 "" nsv131453 18 4259350 4266170 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150031 M 24 "" nsv523068 18 4275070 4282011 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698755 S 2026 0 1 "" nsv510446 18 4285763 4291763 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621449 S 4 0 1 "" NA15510 nsv517765 18 4301534 4303044 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv677260,nssv684672,nssv660670,nssv670910,nssv653156 M 2026 0 5 "" nsv516152 18 4312214 4325455 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv670650,nssv686641,nssv652553,nssv659268,nssv678005,nssv673477,nssv665993,nssv680346,nssv674506,nssv658068,nssv690154,nssv684930,nssv705961,nssv674830,nssv682490,nssv693693,nssv683590,nssv665122,nssv678050,nssv678845 M 2026 0 20 "" nsv458015 18 4320954 4325455 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535084 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00462 nsv817780 18 4320954 4325455 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416239,nssv1416250 M 112 0 2 "" NA19140,NA19142 nsv528429 18 4364408 4380081 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705022 S 2026 1 0 "" nsv519915 18 4452824 4483207 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv659451,nssv689359,nssv663727 M 2026 0 3 "" nsv2192 18 4473893 4511167 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5688,nssv10145 M 9 2 0 "" NA18956,NA19129 nsv509682 18 4491792 4511824 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623726 S 4 1 0 "" NA18994 nsv516161 18 4499325 4508688 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv670610,nssv659334,nssv675227,nssv666555,nssv681995,nssv686160,nssv693902,nssv671052,nssv656398,nssv675169,nssv658251,nssv685350,nssv672265,nssv670474,nssv689670,nssv672492,nssv659222,nssv660686,nssv670238 M 2026 0 19 "" nsv132052 18 4568709 4568709 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150630 M 24 "" nsv2193 18 4684041 4717824 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7361 S 9 1 0 "" NA12156 nsv2194 18 4746875 4779293 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6742 S 9 1 0 "" NA12156 nsv510447 18 5115686 5121686 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618433 S 4 0 1 "" CHM nsv523963 18 5178972 5191442 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699813 S 2026 0 1 "" nsv510448 18 5242455 5248455 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618434,nssv621450,nssv622274,nssv624191 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv7301 18 5243805 5280052 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1393 S 9 0 0 "" NA19240 nsv2195 18 5282101 5325575 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7362 S 9 0 1 "" NA12156 esv33355 18 5293097 5294034 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97563 S 51 0 1 "" 21616 esv33923 18 5305223 5308882 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98670,essv99922 M 51 2 0 "" 21606,22086 dgv11e24 18 5313741 5314539 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH esv2750594,esv2750609,esv2750707,esv2750724 M 51 4 0 "" 21656,21772,21805,21808 nsv130629 18 5314646 5316244 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149207 M 24 "" esv32860 18 5328955 5332577 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100010 S 51 0 1 "" 22086 dgv53n6 18 5447106 5447209 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv131937,nsv131146 M 24 "" nsv521827 18 5514781 5516319 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694601 S 2026 0 1 "" nsv516209 18 5916216 5922670 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv659335,nssv657496,nssv666823,nssv693960,nssv656490,nssv655789,nssv667148,nssv669866,nssv688172 M 2026 0 9 "" nsv442430 18 5918109 5923771 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv131965 18 5948119 5948169 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150543 M 24 "" nsv521604 18 5976416 5977788 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698220 S 2026 0 1 "" nsv518347 18 6027422 6030997 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695775 S 2026 0 1 "" nsv817781 18 6114882 6174092 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418519 S 112 0 1 "" NA19193 nsv131663 18 6146425 6146425 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150241 M 24 "" nsv131635 18 6146437 6146437 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150213 M 24 "" nsv521173 18 6152006 6174092 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697826 S 2026 1 0 "" nsv525681 18 6305088 6310328 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701839 S 2026 0 1 "" nsv528722 18 6487116 6488557 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705376 S 2026 0 1 "" nsv131661 18 6531311 6531499 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150239 M 24 "" nsv525383 18 6537010 6537131 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701505 S 2026 0 1 "" dgv185n21 18 6537010 6537397 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv518781,nsv518419 M 2026 0 2 "" esv34611 18 6731970 6828290 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6986689,essv6978686,essv6978687 M 771 1 0 "" NA12145 dgv1009e1 18 6752909 6933645 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv161,essv18309 M 271 0 0 "" NA10846 nsv9604 18 6833479 6836587 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27065 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19132 nsv833583 18 6853008 7001756 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453887 S 95 1 0 "" nsv132229 18 6899248 6899248 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150807 M 24 "" nsv9605 18 6902443 6905166 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26545,nssv23872,nssv25062,nssv24513,nssv23670 M 31 0 5 Samples from several populations that are part of the HapMap project. "" NA07048,NA10839,NA11830,NA18975,NA19240 nsv7302 18 6916147 6967388 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2187 S 9 0 0 "" NA18555 nsv526300 18 6970523 8381829 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702581 S 2026 0 1 "" nsv131244 18 7336430 7336430 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149822 M 24 "" nsv2196 18 7475533 7510484 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1394 S 9 1 0 "" NA19240 nsv458017 18 7679201 7737873 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535085 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01213 nsv525328 18 7722917 7750498 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701438 S 2026 0 1 "" nsv130934 18 7899701 7899756 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149512 M 24 "" nsv2197 18 7937208 7969930 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2188 S 9 1 0 "" NA18555 nsv521059 18 7952217 7971018 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv692542,nssv680934,nssv683591 M 2026 0 3 "" nsv2198 18 8062281 8096349 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7363 S 9 1 0 "" NA12156 nsv458020 18 8151470 8173260 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535087 S 1557 0 1 "" 1780854123_A nsv458021 18 8183657 8217344 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535088 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00640 nsv817782 18 8287072 8290337 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417199 S 112 0 1 "" NA18558 dgv186n21 18 8553622 8572179 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv524077,nsv519772 M 2026 0 2 "" nsv2200 18 8608182 8653130 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7364 S 9 0 1 "" NA12156 nsv523589 18 8713308 8716629 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699379 S 2026 0 1 "" nsv517204 18 8714457 8716629 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv680818,nssv654004,nssv669710,nssv656586 M 2026 0 4 "" nsv521231 18 8714457 8727474 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697859 S 2026 0 1 "" nsv833584 18 8718616 8894213 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453889,nssv1453888 M 95 1 1 "" nsv516355 18 8724995 8725545 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv673204,nssv667750 M 2026 0 2 "" dgv53n17 18 8766431 8776354 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437820,nsv437821 M 60 0 2 "" NA18521,NA18857 nsv131521 18 8947113 8947113 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150099 M 24 "" nsv523325 18 9073702 9078650 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699068 S 2026 0 1 "" nsv131135 18 9165550 9166274 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149713 M 24 "" dgv187n21 18 9167894 9168306 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv516645,nsv526584 M 2026 0 5 "" dgv54n6 18 9215119 9215455 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv130627,nsv130689 M 24 "" nsv2201 18 9237631 9269825 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7365 S 9 0 1 "" NA12156 dgv55n6 18 9375392 9375728 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv131995,nsv130848 M 24 "" nsv507859 18 9375814 9381814 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620624,nssv617932,nssv623237,nssv619194 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv833585 18 9391630 9587291 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453892,nssv1453891,nssv1453890 M 95 1 2 "" nsv458024 18 9548240 9818448 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535089 S 1557 1 0 "" 1782681555_A nsv509683 18 9590019 9593790 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619724 S 4 1 0 "" NA10860 nsv521175 18 9605851 9613052 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697827 S 2026 0 1 "" nsv131279 18 9611962 9612267 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149857 M 24 "" nsv469897 18 9664498 9860517 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649918 M 265 0 3 Samples from several populations that are part of the HapMap project. "" nsv9606 18 9733017 9745287 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27224 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18972 dgv1010e1 18 9733326 9743992 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1430,essv2942 M 271 0 0 "" NA18972 nsv817783 18 9736909 9742939 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417571 S 112 0 1 "" NA18972 nsv833586 18 9773830 9961693 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453893 S 95 0 1 "" nsv9607 18 9804637 9806374 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24342,nssv27252,nssv27234,nssv24863,nssv23330,nssv24914,nssv23728,nssv26589,nssv24155 M 31 0 9 Samples from several populations that are part of the HapMap project. "" NA12740,NA18517,NA18537,NA18563,NA18564,NA18942,NA18972,NA18975,NA19240 nsv507860 18 9838078 9844078 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623238,nssv620625,nssv619195 M 4 3 0 "" NA10860,NA15510,NA18994 nsv527829 18 9872587 9915700 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704325 S 2026 1 0 "" nsv131733 18 9913242 9913336 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150311 M 24 "" nsv131589 18 9913338 9913432 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150167 M 24 "" nsv526637 18 9941304 9947918 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702959 S 2026 0 1 "" nsv518334 18 9984685 10122916 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695763 S 2026 1 0 "" nsv132087 18 10140893 10141048 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150665 M 24 "" nsv833587 18 10200667 10367230 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453894 S 95 1 0 "" nsv521207 18 10334360 10340887 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700290,nssv685117,nssv692448 M 2026 0 3 "" esv33029 18 10448243 10448572 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99313 S 51 1 0 "" 22275 nsv131991 18 10452423 10452669 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150569 M 24 "" nsv458026 18 10477443 10505294 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535090 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01372 nsv525588 18 10568697 10586536 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701727 S 2026 0 1 "" nsv2202 18 10598248 10632111 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2978 S 9 1 0 "" NA18555 nsv2203 18 10699396 10728627 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10146 S 9 1 0 "" NA18956 nsv833588 18 10726486 10958885 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453895 S 95 1 0 "" nsv458028 18 10804334 10853849 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535091 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00696 nsv458029 18 10804334 11652151 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535092 S 1557 1 0 "" 1782681555_A nsv131984 18 11005115 11005284 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150562 M 24 "" nsv833589 18 11283101 11444521 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453896 S 95 1 0 "" nsv516281 18 11461820 11462102 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv672108,nssv667317 M 2026 0 2 "" nsv2204 18 11489825 11534209 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2189 S 9 0 1 "" NA18555 nsv131377 18 11499706 11501474 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149955 M 24 "" nsv131616 18 11511743 11511743 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150194 M 24 "" nsv2205 18 11534143 11535718 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6743 S 9 1 0 "" NA12156 nsv520209 18 11547161 11554905 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697282 S 2026 0 1 "" nsv519488 18 11552631 11555370 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv656397,nssv674021,nssv686708 M 2026 0 3 "" nsv524533 18 11660845 11673431 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700483 S 2026 0 1 "" nsv518207 18 11660845 11685676 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695631 S 2026 0 1 "" nsv130708 18 11669607 11671299 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149286 M 24 "" nsv516128 18 11673431 11685676 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv668546,nssv680483,nssv669192,nssv692491,nssv690447,nssv679994,nssv666392,nssv671148,nssv690798,nssv667147,nssv683589,nssv673586,nssv684569,nssv654726 M 2026 0 14 "" nsv833590 18 11747329 11914539 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453897 S 95 1 0 "" nsv131836 18 11816236 11816299 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150414 M 24 "" nsv525904 18 11863934 11869825 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702108 S 2026 0 1 "" dgv1011e1 18 11887023 12066102 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv7746,esv440,essv10693,essv14725,essv10951 M 271 0 0 "" NA18542,NA18855,NA19159,NA19209 nsv2206 18 11909202 11936727 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10148 S 9 1 0 "" NA18956 nsv528699 18 11979416 12019857 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705345 S 2026 0 1 "" nsv9608 18 12062482 12068283 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28373 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19221 nsv507861 18 12190955 12196955 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620626,nssv617933,nssv623239 M 4 3 0 "" CHM,NA15510,NA18994 nsv131748 18 12221204 12221204 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150326 M 24 "" dgv1012e1 18 12230681 12489525 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv4203,esv140 M 271 0 0 "" NA18526 nsv9609 18 12386442 12389505 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26112,nssv26603,nssv24539,nssv27567 M 31 4 0 Samples from several populations that are part of the HapMap project. "" NA10839,NA12155,NA18860,NA19240 nsv9610 18 12407586 12414527 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28375 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19221 nsv519557 18 12407905 12421506 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv683891,nssv656838 M 2026 0 2 "" nsv130656 18 12415482 12416552 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149234 M 24 "" nsv130820 18 12451596 12451596 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149398 M 24 "" nsv2207 18 12462444 12483521 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4302,nssv1395 M 9 2 0 "" NA12878,NA19240 nsv2208 18 12462999 12508189 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7366 S 9 0 1 "" NA12156 nsv523743 18 12464505 12732809 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699559 S 2026 0 1 "" nsv131761 18 12581993 12583952 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150339 M 24 "" esv33130 18 12701423 12705465 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101000 S 51 0 1 "" 21693 nsv130834 18 12841183 12841511 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149412 M 24 "" nsv131711 18 12842004 12842004 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150289 M 24 "" nsv132152 18 12875273 12880021 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150730 M 24 "" nsv437176 18 13048494 13058132 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467057 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA07348 nsv833591 18 13083777 13243748 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453899,nssv1453898 M 95 2 0 "" nsv515878 18 13112618 13132415 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv655550,nssv692377,nssv665121,nssv682349,nssv672899,nssv671937 M 2026 0 6 "" nsv817785 18 13120681 13123577 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416809,nssv1416808 M 112 0 2 "" NA19159,NA19161 nsv524245 18 13178524 13178836 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700137 S 2026 1 0 "" nsv131306 18 13222455 13222530 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149884 M 24 "" nsv2209 18 13266410 13306570 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7367 S 9 0 1 "" NA12156 nsv131518 18 13576421 13576861 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150096 M 24 "" nsv2211 18 13588706 13604926 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5689 S 9 1 0 "" NA19129 nsv131156 18 13649843 13653204 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149734 M 24 "" nsv507862 18 13770399 13776399 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623240 S 4 1 0 "" NA18994 nsv523660 18 13800828 13805680 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699461 S 2026 0 1 "" nsv525155 18 13800828 13809673 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701227 S 2026 0 1 "" nsv521602 18 13844080 13855075 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698218 S 2026 0 1 "" nsv523316 18 13942711 13972662 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699058 S 2026 0 1 "" nsv507863 18 13963750 13969750 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619196 S 4 1 0 "" NA10860 dgv1013e1 18 13988748 15367893 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv4840,esv791 M 271 0 0 "" NA18540 esv33327 18 14027144 14027487 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99776 S 51 0 1 "" 22086 nsv131218 18 14046518 14047216 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149796 M 24 "" nsv520945 18 14066972 14255834 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697702 S 2026 0 1 "" essv3388 18 14077067 14251361 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18945 nsv516839 18 14085439 14087884 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv654375,nssv675021 M 2026 0 2 "" nsv528944 18 14085439 14095853 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705636 S 2026 0 1 "" nsv525471 18 14127657 14298620 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701599 S 2026 1 0 "" nsv9611 18 14129951 14141707 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27240,nssv28377 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA18502,NA19221 nsv9612 18 14172152 14181251 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24368,nssv24918,nssv26131,nssv23847 M 31 4 0 Samples from several populations that are part of the HapMap project. "" NA10863,NA12155,NA18537,NA18564 essv21603 18 14198563 14548050 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12155 essv5519 18 14233252 14962122 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18529 nsv526752 18 14243537 14255834 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703099 S 2026 1 0 "" nsv9614 18 14243872 14326527 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28379,nssv26150,nssv27244,nssv24392,nssv27575,nssv27075,nssv27250 M 31 5 2 Samples from several populations that are part of the HapMap project. "" NA12155,NA18502,NA18552,NA18860,NA18972,NA19132,NA19221 nsv2212 18 14266803 14299431 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5690 S 9 1 0 "" NA19129 nsv2213 18 14267319 14292749 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6745 S 9 0 1 "" NA12156 nsv833593 18 14422183 14599021 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453909,nssv1453911,nssv1453906,nssv1453907,nssv1453905,nssv1453902,nssv1453901,nssv1453903,nssv1453910,nssv1453908,nssv1453900,nssv1453904 M 95 12 0 "" nsv9615 18 14431576 14599353 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24181,nssv21190,nssv27085,nssv27254,nssv23755,nssv23358,nssv26578,nssv26629,nssv24394,nssv26616,nssv27260,nssv26199,nssv25745,nssv24939,nssv25087 M 31 5 9 Samples from several populations that are part of the HapMap project. "" NA11830,NA12155,NA12740,NA12802,NA18502,NA18504,NA18563,NA18564,NA18942,NA18972,NA18975,NA19132,NA19144,NA19240 nsv2214 18 14439752 14451382 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6746 S 9 0 1 "" NA12156 nsv510732 18 14528883 14557998 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622730 S 4 0 1 "" NA18994 nsv523173 18 14574726 14724475 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698885 S 2026 1 0 "" nsv442431 18 14583863 14594228 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv2215 18 14636188 14671278 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4303 S 9 1 0 "" NA12878 esv2751771 18 14694694 15096727 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6984124,essv6984123 M 771 0 1 "" BEC_779 nsv9616 18 14701431 14704052 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24420,nssv23899,nssv21220 M 31 0 3 Samples from several populations that are part of the HapMap project. "" NA07048,NA12802,NA18564 nsv9617 18 14726667 14738499 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23510,nssv24943,nssv24964,nssv24821,nssv23782,nssv26218,nssv24625 M 31 2 5 Samples from several populations that are part of the HapMap project. "" NA07029,NA10839,NA12155,NA12740,NA18537,NA18975,NA18980 nsv510449 18 14728143 14734143 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618435,nssv622276 M 4 0 2 "" CHM,NA10860 dgv1014e1 18 14731611 14855985 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv17854,essv21877 M 271 0 0 "" NA06991,NA10857 essv24101 18 14743891 14828909 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA07048 nsv2216 18 14766359 14831989 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9972,nssv10149,nssv1396,nssv5691 M 9 0 4 "" NA18507,NA18956,NA19129,NA19240 nsv9618 18 14774248 14807724 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21641,nssv26592 M 31 1 1 Samples from several populations that are part of the HapMap project. "" NA12872,NA18504 essv21900 18 14782614 14845278 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA10838 dgv1015e1 18 14817332 14998645 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv5399,essv883 M 271 0 0 "" NA18563,NA19000 nsv9619 18 14832691 14841922 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24846 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18980 nsv9620 18 14858404 14886940 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24207,nssv27300 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA18502,NA18563 nsv2217 18 14892173 14926129 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4304 S 9 1 0 "" NA12878 nsv132082 18 14911129 14911129 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150660 M 24 "" esv33381 18 14919347 15042868 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98695 S 51 1 0 "" 21606 nsv437822 18 14928839 14937953 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467703 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18854 nsv526858 18 14930293 14944303 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703216 S 2026 1 0 "" dgv1016e1 18 14979964 15367893 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv21680,essv1891 M 271 0 0 "" NA12248,NA18976 nsv511061 18 15026919 15101569 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621642 S 4 0 0 "" NA15510 nsv510450 18 15046835 15052835 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624192 S 4 0 1 "" NA18994 nsv2218 18 15060298 15092282 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4305,nssv6747 M 9 2 0 "" NA12156,NA12878 dgv1017e1 18 15151379 15367893 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv7365,essv6980 M 271 0 0 "" NA18570,NA18612 nsv2219 18 15157665 15176048 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7368 S 9 0 1 "" NA12156 nsv509684 18 15215338 15250269 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623727 S 4 1 0 "" NA18994 nsv527649 18 15235488 15309251 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704120 S 2026 0 1 "" nsv9621 18 15356606 16798913 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24233,nssv27264 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA18563,NA18972 nsv833594 18 16768852 16810218 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453912,nssv1453913 M 95 1 1 "" nsv509685 18 17027778 17068328 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623728 S 4 1 0 "" NA18994 nsv833595 18 17093610 17277836 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453914 S 95 0 1 "" nsv509686 18 17291660 17353866 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623729 S 4 1 0 "" NA18994 nsv2220 18 17308557 17353374 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7370 S 9 0 1 "" NA12156 nsv132210 18 17355344 17355963 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150788 M 24 "" nsv130594 18 17437257 17441294 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149172 M 24 "" nsv2222 18 17650509 17685513 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1397 S 9 1 0 "" NA19240 nsv131147 18 17791293 17795405 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149725 M 24 "" nsv132173 18 17816312 17817095 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150751 M 24 "" nsv527879 18 17878222 17880193 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704381 S 2026 0 1 "" nsv833596 18 17908992 18073471 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453916,nssv1453915 M 95 0 2 "" nsv2223 18 17917076 17950569 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4306 S 9 1 0 "" NA12878 esv33265 18 17928102 17928958 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98809,essv97034,essv95636,essv97397,essv99397,essv96363 M 51 5 1 "" 21606,21817,21841,21879,22335,22371 nsv130851 18 18066639 18066639 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149429 M 24 "" nsv515584 18 18299754 18320153 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv673535,nssv678618,nssv664031,nssv664003,nssv669241,nssv679404,nssv678645,nssv665357,nssv659985,nssv659533,nssv674022,nssv668202,nssv682907,nssv680484,nssv657367,nssv679995,nssv685691,nssv656281,nssv665169,nssv690400 M 2026 0 20 "" nsv442432 18 18308209 18319975 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv817786 18 18308209 18320153 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418223,nssv1416978 M 112 0 2 "" NA19137,NA19143 nsv510451 18 18329957 18335957 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621451 S 4 0 1 "" NA15510 nsv524015 18 18350593 18357065 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699875 S 2026 0 1 "" nsv2224 18 18355324 18393418 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2979,nssv9973,nssv4307,nssv7371,nssv10151,nssv1398 M 9 6 0 "" NA12156,NA12878,NA18507,NA18555,NA18956,NA19240 nsv509687 18 18386272 18386272 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623730 S 4 1 0 "" NA18994 nsv516372 18 18412571 18414312 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv671520,nssv663646,nssv678669,nssv658168,nssv667842 M 2026 0 5 "" nsv131389 18 18426057 18426109 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149967 M 24 "" nsv2225 18 18426316 18460345 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2980 S 9 1 0 "" NA18555 nsv2226 18 18459666 18505443 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6748 S 9 0 1 "" NA12156 nsv526753 18 18551873 18553111 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703100 S 2026 0 1 "" nsv131531 18 18574261 18574261 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150109 M 24 "" nsv2227 18 18734801 18761840 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6749 S 9 1 0 "" NA12156 nsv131399 18 18817628 18817628 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149977 M 24 "" nsv130930 18 18873987 18874038 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149508 M 24 "" nsv131438 18 18905068 18910922 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150016 M 24 "" nsv833597 18 19017248 19059585 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453917,nssv1453918 M 95 0 2 "" dgv1018e1 18 19024430 19181612 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv17263,esv122 M 271 0 0 "" NA18503 esv32657 18 19037930 19187865 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99393 S 51 0 1 "" 22335 nsv458033 18 19054713 19124158 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535094 S 1557 0 1 "" 1780854288_A nsv131131 18 19137579 19138323 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149709 M 24 "" nsv509688 18 19317821 19444615 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623731 S 4 1 0 "" NA18994 nsv525746 18 19321074 19334672 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701913 S 2026 0 1 "" nsv131772 18 19327710 19327801 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150350 M 24 "" nsv131804 18 19449937 19449937 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150382 M 24 "" nsv131838 18 19450128 19450128 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150416 M 24 "" nsv2228 18 19741828 19776743 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4308 S 9 1 0 "" NA12878 nsv2229 18 20027954 20047108 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4309 S 9 1 0 "" NA12878 nsv522361 18 20220413 20227868 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695142 S 2026 0 1 "" nsv521369 18 20302545 20313092 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697978 S 2026 1 0 "" nsv2230 18 20328125 20363360 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1399,nssv7372 M 9 2 0 "" NA12156,NA19240 nsv833598 18 20425356 20591550 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453919,nssv1453920 M 95 2 0 "" nsv527893 18 20461587 20556033 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704396 S 2026 0 1 "" nsv458035 18 20714783 20730927 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535095 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00883 nsv130991 18 20772758 20772809 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149569 M 24 "" nsv132044 18 20773559 20773622 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150622 M 24 "" nsv527984 18 20937539 20945081 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704503 S 2026 0 1 "" nsv131198 18 21033944 21039103 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149776 M 24 "" nsv510733 18 21078856 21127801 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622732 S 4 0 1 "" NA18994 dgv56n6 18 21146479 21146816 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv131003,nsv131871 M 24 "" nsv521168 18 21181755 21186844 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697824 S 2026 0 1 "" nsv507864 18 21265579 21271579 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623241,nssv619197 M 4 2 0 "" NA10860,NA18994 nsv524667 18 21455049 21458701 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700636 S 2026 0 1 "" nsv833599 18 21543717 21705588 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453921 S 95 1 0 "" nsv2231 18 21669312 21700649 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10152 S 9 1 0 "" NA18956 nsv521170 18 21698467 21714952 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697825 S 2026 1 0 "" nsv458036 18 21707096 21734125 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535096 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00259 nsv2233 18 21951693 21986289 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4311 S 9 1 0 "" NA12878 nsv2234 18 21995198 22033246 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2190,nssv7373 M 9 0 2 "" NA12156,NA18555 nsv2235 18 22387727 22397875 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7374 S 9 0 1 "" NA12156 nsv438277 18 22620486 22621971 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470690 S 269 0 1 Samples from several populations that are part of the HapMap project. "" NA19171 nsv527852 18 22718280 22720491 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704350 S 2026 0 1 "" nsv833600 18 22727892 22935017 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453922 S 95 1 0 "" nsv2236 18 22977712 23010289 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5692 S 9 1 0 "" NA19129 nsv528945 18 23004144 23004732 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705637 S 2026 0 1 "" nsv518698 18 23033599 23047161 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696149 S 2026 0 1 "" nsv833601 18 23162238 23334973 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453923 S 95 0 1 "" nsv833602 18 23247028 23434821 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453924 S 95 1 0 "" nsv833604 18 23480725 23671421 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453925 S 95 1 0 "" nsv521603 18 23553827 23563412 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698219 S 2026 0 1 "" nsv833605 18 23721094 23897445 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453926 S 95 1 0 "" nsv528211 18 23727940 23728970 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704772 S 2026 0 1 "" nsv9622 18 24003903 24286814 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24157,nssv28380,nssv27095 M 31 0 3 Samples from several populations that are part of the HapMap project. "" NA18853,NA19132,NA19221 nsv132148 18 24081891 24082223 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150726 M 24 "" nsv132043 18 24125817 24125817 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150621 M 24 "" nsv833606 18 24155779 24347910 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453927 S 95 0 1 "" nsv516519 18 24230826 24232717 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv692541,nssv668812,nssv674023 M 2026 0 3 "" nsv833607 18 24344567 24490809 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453930,nssv1453929,nssv1453928 M 95 3 0 "" nsv131565 18 24355420 24355562 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150143 M 24 "" dgv1019e1 18 24413258 24450849 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1345,essv22262,essv3849 M 271 0 0 "" NA11992,NA18953 nsv2237 18 24489581 24557666 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2192,nssv10153,nssv1400 M 9 0 3 "" NA18555,NA18956,NA19240 nsv131093 18 24508543 24514665 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149671 M 24 "" nsv510734 18 24525563 24537748 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620106 S 4 0 1 "" NA15510 nsv131340 18 24617757 24618077 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149918 M 24 "" nsv833608 18 24640345 24737104 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453931 S 95 1 0 "" nsv517928 18 24778672 24781137 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695340 S 2026 0 1 "" nsv458039 18 24831978 24873396 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535097 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01201 nsv526404 18 25020105 25022184 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702704 S 2026 1 0 "" nsv833609 18 25103630 25299486 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453933,nssv1453932 M 95 0 2 "" nsv525561 18 25116408 25135862 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701700 S 2026 1 0 "" nsv2238 18 25212134 25246442 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4312 S 9 1 0 "" NA12878 nsv524830 18 25230292 25234387 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700831 S 2026 0 1 "" nsv2239 18 25278345 25312558 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4313 S 9 1 0 "" NA12878 nsv520618 18 25462507 25588781 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697521 S 2026 0 1 "" nsv517228 18 25471320 25476107 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697206,nssv684129,nssv676260,nssv657381,nssv679897,nssv654072 M 2026 0 6 "" nsv817787 18 25471320 25476107 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417074,nssv1417075 M 112 0 2 "" NA07000,NA07029 nsv525997 18 25552694 25603527 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702222 S 2026 0 1 "" nsv518017 18 25607166 25622783 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695429 S 2026 0 1 "" nsv131967 18 25617743 25617743 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150545 M 24 "" nsv131292 18 25617761 25617761 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149870 M 24 "" nsv131968 18 25618024 25618183 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150546 M 24 "" nsv130692 18 25618229 25618534 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149270 M 24 "" dgv378n27 18 25652631 25720175 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv458043,nsv458042 M 1557 2 0 "" HGDP01250,HGDP01397 nsv2240 18 25701410 25746737 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7375 S 9 0 1 "" NA12156 nsv833610 18 25770362 25922349 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453934 S 95 0 1 "" nsv833611 18 25849306 25897384 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453936,nssv1453939,nssv1453935,nssv1453938,nssv1453937 M 95 5 0 "" nsv131259 18 25883679 25884004 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149837 M 24 "" nsv2241 18 25964850 25998563 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7376 S 9 1 0 "" NA12156 nsv131443 18 26054860 26054860 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150021 M 24 "" nsv516109 18 26057218 26116543 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv683837,nssv682842,nssv675406,nssv666253,nssv663476,nssv693099,nssv684148,nssv682110,nssv674277 M 2026 0 9 "" dgv1020e1 18 26068546 26073661 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv17877,essv21621,essv20747,esv906,essv23116 M 271 0 0 "" NA07348,NA07357,NA10857,NA12043 nsv817788 18 26080651 26082308 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415602 S 112 1 0 "" NA12154 nsv2242 18 26268037 26313385 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6750 S 9 0 1 "" NA12156 nsv833612 18 26342778 26505574 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453940,nssv1453941,nssv1453942 M 95 1 2 "" nsv515523 18 26535250 26537409 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv666152,nssv677424,nssv676742,nssv659575,nssv653451,nssv659631,nssv674829,nssv675088,nssv688070,nssv686709,nssv672074,nssv673587,nssv674252,nssv691106,nssv666208,nssv700506,nssv666475,nssv667569 M 2026 0 18 "" nsv833613 18 26700452 26877597 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453943,nssv1453944 M 95 1 1 "" nsv507865 18 26732661 26738661 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619198 S 4 1 0 "" NA10860 nsv526587 18 26883837 26893546 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702905 S 2026 0 1 "" nsv2244 18 26889552 26920378 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7377 S 9 0 1 "" NA12156 nsv130642 18 26950271 26955120 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149220 M 24 "" nsv519734 18 26961413 26975532 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697019 S 2026 0 1 "" dgv57n6 18 26993026 27002056 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv131242,nsv132191 M 24 "" nsv2245 18 27041074 27075373 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1401 S 9 1 0 "" NA19240 nsv507866 18 27090564 27096564 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617934,nssv619199 M 4 2 0 "" CHM,NA10860 nsv521618 18 27190831 27191190 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698236 S 2026 0 1 "" nsv524890 18 27221408 27310463 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700896 S 2026 1 0 "" nsv458045 18 27223042 27310463 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535101 S 1557 1 0 "" 1780862557_A esv2751776 18 27224145 27311717 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6983125,essv6983124,essv6983123 M 771 1 0 "" BEC_544 nsv833615 18 27262394 27446974 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453945 S 95 1 0 "" nsv437177 18 27283766 27293281 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467058 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA10855 nsv438278 18 27287138 27288302 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470694,nssv470693,nssv470692,nssv470691 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA10855,NA11832 nsv507867 18 27395426 27401426 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623242,nssv620628 M 4 2 0 "" NA15510,NA18994 nsv2246 18 27558955 27574748 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5693 S 9 1 0 "" NA19129 nsv2247 18 27624840 27669710 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7378 S 9 0 1 "" NA12156 nsv131072 18 27769530 27770863 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149650 M 24 "" nsv524199 18 27849162 27852807 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700083 S 2026 0 1 "" dgv1021e1 18 27886747 27928990 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv6802,esv1029 M 271 0 0 "" NA18594 nsv2248 18 27928799 27945678 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2193 S 9 1 0 "" NA18555 esv32777 18 27991072 27992015 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100813,essv98985,essv98126 M 51 2 1 "" 21656,21938,22259 nsv2249 18 27994192 28026646 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6751 S 9 1 0 "" NA12156 nsv833616 18 28046334 28218210 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453949,nssv1453946,nssv1453956,nssv1453948,nssv1453947,nssv1453950,nssv1453951,nssv1453955,nssv1453952,nssv1453953,nssv1453954,nssv1453957,nssv1453960,nssv1453958,nssv1453959 M 95 15 0 "" nsv528846 18 28086145 28144040 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705525 S 2026 1 0 "" nsv9623 18 28141854 28143744 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24989,nssv27583,nssv24479,nssv24871,nssv23416,nssv21250,nssv24446,nssv21671,nssv24259,nssv23926,nssv25112,nssv25410,nssv26642,nssv26237,nssv23874,nssv27304,nssv24183,nssv27262,nssv24968,nssv27105 M 31 20 0 Samples from several populations that are part of the HapMap project. "" NA07048,NA10863,NA11830,NA12155,NA12740,NA12802,NA12872,NA18517,NA18537,NA18563,NA18564,NA18853,NA18860,NA18942,NA18972,NA18980,NA19007,NA19132,NA19173,NA19240 nsv527853 18 28450802 28460208 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704351 S 2026 0 1 "" dgv1022e1 18 28637325 28828735 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv311,essv12721 M 271 0 0 "" NA18914 esv32785 18 28667357 28725469 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99415 S 51 1 0 "" 22335 nsv2250 18 28727756 28759925 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4314 S 9 0 1 "" NA12878 nsv528397 18 28752619 28810983 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704987 S 2026 0 1 "" nsv833617 18 28809109 28947585 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453963,nssv1453962,nssv1453961,nssv1453965,nssv1453964 M 95 5 0 "" nsv130684 18 28930256 28930311 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149262 M 24 "" nsv131084 18 28930300 28930355 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149662 M 24 "" nsv438279 18 29106117 29116515 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470695,nssv470698,nssv470697 M 269 0 3 Samples from several populations that are part of the HapMap project. "" NA18624,NA18968,NA19007 nsv520131 18 29236866 29256803 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697240 S 2026 0 1 "" nsv833618 18 29251935 29427023 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453966 S 95 1 0 "" nsv131173 18 29405460 29405531 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149751 M 24 "" nsv131746 18 29568096 29568096 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150324 M 24 "" dgv379n27 18 29637887 29674008 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv458047,nsv458046 M 1557 0 2 "" 1780862276_A,1780862345_A nsv458048 18 29674008 29751344 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535104 S 1557 0 1 "" 1780862093_A nsv132109 18 29787207 29787207 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150687 M 24 "" nsv458049 18 29811111 29846136 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535105 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01256 dgv58n6 18 30000704 30001054 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv131590,nsv131123 M 24 "" nsv519676 18 30005069 30005999 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696987 S 2026 1 0 "" nsv833619 18 30109036 30293803 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453967 S 95 1 0 "" nsv516464 18 30333530 30339720 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv668548,nssv668632,nssv693779 M 2026 0 3 "" nsv525306 18 30333530 30357167 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701413 S 2026 0 1 "" nsv2251 18 30398963 30408650 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5694 S 9 1 0 "" NA19129 nsv131325 18 30587307 30587655 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149903 M 24 "" nsv516682 18 30797532 30811679 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv670120,nssv679972 M 2026 0 2 "" nsv132225 18 30818964 30819014 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150803 M 24 "" nsv2252 18 31279912 31326016 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6752 S 9 0 1 "" NA12156 nsv2253 18 31548610 31559822 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4642 S 9 0 1 "" NA19129 nsv2255 18 31591628 31623948 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6753 S 9 1 0 "" NA12156 nsv524112 18 31594247 31611866 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699990 S 2026 0 1 "" nsv528670 18 31604915 31605822 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705308 S 2026 0 1 "" nsv519182 18 31651305 31662316 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696666 S 2026 0 1 "" nsv523832 18 31651305 31670273 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699663 S 2026 0 1 "" nsv7303 18 31849863 31861728 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10984 S 9 0 0 "" NA15510 nsv522157 18 31866827 31879368 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694931 S 2026 0 1 "" nsv526055 18 31973042 31998700 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702293 S 2026 0 1 "" nsv522803 18 32021747 32033703 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698448 S 2026 0 1 "" nsv130568 18 32027290 32035624 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149146 M 24 "" nsv524668 18 32105471 32106615 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700637 S 2026 0 1 "" nsv522170 18 32143579 32156598 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694943 S 2026 0 1 "" nsv527769 18 32233409 32283169 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704258 S 2026 0 1 "" dgv1023e1 18 32241210 32272575 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv13209,esv1389 M 271 0 0 "" NA19120 nsv833620 18 32252405 32457732 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453969,nssv1453968 M 95 2 0 "" nsv525007 18 32290294 32291551 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701042 S 2026 0 1 "" nsv9625 18 32292885 32298321 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27591 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18860 dgv1024e1 18 32304033 32735865 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1806,esv843,essv392 M 271 0 0 "" NA18971 nsv518778 18 32306136 32306192 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696231 S 2026 0 1 "" nsv130624 18 32347988 32353916 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149202 M 24 "" esv34228 18 32370299 32683125 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6978136,essv6978137,essv6978138,essv6978139,essv6990201 M 771 1 0 "" NA18971 nsv817789 18 32370299 32690368 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417558 S 112 1 0 "" NA18971 nsv438280 18 32373426 32438195 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470699 S 269 0 1 Samples from several populations that are part of the HapMap project. "" NA18971 nsv2256 18 32395946 32429229 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7379 S 9 1 0 "" NA12156 nsv9626 18 32407624 32412027 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24505 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19007 nsv526596 18 32487229 32487640 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702915 S 2026 1 0 "" nsv437823 18 32497970 32515046 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467704 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18503 nsv442433 18 32508865 32513777 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv438282 18 32509114 32510666 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470701,nssv470700 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA18503,NA18505 nsv132037 18 32597574 32597629 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150615 M 24 "" nsv438283 18 32655158 32679797 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470702 S 269 0 1 Samples from several populations that are part of the HapMap project. "" NA18971 nsv2257 18 32860311 32878773 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4315 S 9 1 0 "" NA12878 nsv833621 18 32961686 33136674 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453970 S 95 0 1 "" nsv2258 18 32993780 33038203 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4643 S 9 0 1 "" NA19129 nsv527900 18 33132224 33136657 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704404 S 2026 0 1 "" nsv518594 18 33156345 33159109 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696041 S 2026 1 0 "" dgv59n6 18 33172084 33172423 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv131412,nsv132067 M 24 "" nsv833622 18 33200000 33382388 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453972,nssv1453973,nssv1453971 M 95 0 3 "" nsv458053 18 33207043 33235614 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535107 S 1557 0 1 "" NINDS_69 nsv509689 18 33270910 33373773 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623732,nssv619725 M 4 2 0 "" NA10860,NA18994 nsv458055 18 33296880 33321125 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535108 S 1557 0 1 "" 1780854492_A nsv524947 18 33328480 33328759 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700965 S 2026 0 1 "" nsv2259 18 33334136 33379367 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7380 S 9 0 1 "" NA12156 nsv509691 18 33499815 33579170 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619726 S 4 1 0 "" NA10860 nsv131974 18 33569635 33569952 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150552 M 24 "" nsv2260 18 33651576 33697019 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5695 S 9 0 1 "" NA19129 nsv442434 18 33787635 33791132 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv520984 18 33788038 33789684 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv691981,nssv679171 M 2026 0 2 "" nsv833623 18 33833685 34045546 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453974 S 95 1 0 "" nsv520543 18 33939251 33941894 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697477 S 2026 0 1 "" nsv524335 18 34029234 34038769 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700242 S 2026 0 1 "" nsv527743 18 34078343 34093363 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704229 S 2026 0 1 "" nsv521820 18 34087299 34090565 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694591 S 2026 0 1 "" nsv524150 18 34131180 34145420 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700029 S 2026 0 1 "" nsv515553 18 34214924 34221480 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv684570,nssv668813,nssv671846,nssv683236,nssv666513,nssv665800,nssv679641,nssv663888,nssv661878,nssv686951,nssv682060 M 2026 0 11 "" nsv131721 18 34306141 34306224 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150299 M 24 "" nsv521112 18 34318613 34323444 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv682371,nssv687741 M 2026 0 2 "" nsv2261 18 34881903 34929468 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1402 S 9 0 1 "" NA19240 nsv442435 18 34911440 34920221 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv833624 18 35066932 35247233 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453976,nssv1453975,nssv1453977 M 95 1 2 "" nsv518021 18 35107732 35113200 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695431 S 2026 0 1 "" nsv132102 18 35116042 35116042 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150680 M 24 "" nsv131527 18 35157767 35157840 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150105 M 24 "" nsv131786 18 35157842 35157915 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150364 M 24 "" nsv833626 18 35200904 35355309 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453978 S 95 0 1 "" nsv833627 18 35233797 35380105 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453979 S 95 1 0 "" nsv518996 18 35242311 35338454 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696463 S 2026 0 1 "" nsv518471 18 35266706 35540370 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695907 S 2026 0 1 "" dgv60n6 18 35315631 35315974 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv131387,nsv131513 M 24 "" nsv519944 18 35387259 35395199 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv659591,nssv690550 M 2026 0 2 "" nsv510735 18 35396386 35411565 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620107 S 4 0 1 "" NA15510 nsv507868 18 35401703 35407703 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619200,nssv623244,nssv617935 M 4 3 0 "" CHM,NA10860,NA18994 dgv1025e1 18 35736115 35903305 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv5270,esv352 M 271 0 0 "" NA18624 nsv9627 18 35757036 35770901 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27115,nssv27309 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18502,NA19132 nsv2262 18 35768560 35803463 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4316 S 9 1 0 "" NA12878 nsv131359 18 35834375 35834375 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149937 M 24 "" nsv2263 18 35870370 35904617 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7381 S 9 1 0 "" NA12156 nsv510452 18 36016865 36022865 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621452 S 4 0 1 "" NA15510 nsv519000 18 36085155 36104003 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694296 S 2026 1 0 "" nsv458057 18 36169650 36195504 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535109 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00886 nsv438284 18 36241530 36249382 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470703 S 269 0 1 Samples from several populations that are part of the HapMap project. "" NA18506 nsv471798 18 36260200 36261019 CNV Loss Hinds et al 2006 16327809 Oligo_aCGH,PCR Custom Perlegen arrays nssv646079 M 1.289 95 "" nsv516683 18 36315699 36319558 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv660560,nssv670137 M 2026 0 2 "" nsv2264 18 36329177 36362917 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7382 S 9 1 0 "" NA12156 nsv833628 18 36430587 36595707 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453980,nssv1453981 M 95 2 0 "" nsv510736 18 36506049 36519265 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618954 S 4 0 1 "" NA10860 nsv9628 18 36513759 36521669 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24418,nssv23444,nssv23809,nssv27313,nssv26255,nssv27318,nssv23538,nssv24209,nssv24993,nssv27125,nssv28411,nssv24315,nssv24926,nssv24651,nssv25014,nssv26655 M 31 0 16 Samples from several populations that are part of the HapMap project. "" NA07029,NA10839,NA12155,NA12740,NA18502,NA18537,NA18552,NA18563,NA18853,NA18942,NA18972,NA18975,NA18980,NA19132,NA19221,NA19240 nsv442750 18 36514418 36519387 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv438285 18 36514524 36520198 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470708,nssv470705,nssv470709,nssv470704,nssv470706 M 269 0 5 Samples from several populations that are part of the HapMap project. "" NA06994,NA10830,NA10839,NA11993,NA12761 nsv519861 18 36536284 36538715 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694075 S 2026 1 0 "" nsv507869 18 36677876 36683876 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623245 S 4 1 0 "" NA18994 nsv524224 18 36784354 36791626 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700112 S 2026 0 1 "" nsv2266 18 36831597 36866228 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4317 S 9 1 0 "" NA12878 nsv438286 18 36928405 36932801 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470710 S 269 0 1 Samples from several populations that are part of the HapMap project. "" NA18571 nsv520844 18 36952338 36954862 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv692608,nssv676323 M 2026 0 2 "" nsv520104 18 36966697 36968599 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697225 S 2026 0 1 "" nsv833629 18 37045938 37213143 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453983,nssv1453982 M 95 2 0 "" nsv833630 18 37071117 37266220 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453984 S 95 0 1 "" nsv510737 18 37114424 37125440 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622733,nssv620108 M 4 0 2 "" NA15510,NA18994 nsv132062 18 37182812 37182939 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150640 M 24 "" nsv130773 18 37326769 37326769 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149351 M 24 "" nsv2267 18 37377938 37423581 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6754 S 9 0 1 "" NA12156 dgv61n6 18 37397401 37397481 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv131506,nsv132151 M 24 "" nsv131559 18 37441996 37442333 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150137 M 24 "" esv34808 18 37638400 37686700 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6988990,essv6978007 M 771 0 1 "" NA10856 dgv1026e1 18 37638408 37686676 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv25133,essv20837,esv1321 M 271 0 0 "" NA10856,NA11829 nsv2268 18 37741040 37785719 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7384 S 9 0 1 "" NA12156 nsv507870 18 37786048 37792048 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623246 S 4 1 0 "" NA18994 nsv471799 18 37839678 37840529 CNV Loss Hinds et al 2006 16327809 Oligo_aCGH,PCR Custom Perlegen arrays nssv646080 M 0.343 95 "" nsv131226 18 37843681 37843740 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149804 M 24 "" nsv833631 18 37887501 38078089 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453985 S 95 0 1 "" nsv525562 18 38003560 38054891 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701701 S 2026 1 0 "" nsv130787 18 38107995 38107995 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149365 M 24 "" dgv1027e1 18 38183758 38194401 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1077,essv8679,essv8025 M 271 0 0 "" NA18871,NA18912 nsv511062 18 38284297 38323378 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618628 S 4 0 0 "" CHM nsv471800 18 38307770 38311677 CNV Loss Hinds et al 2006 16327809 Oligo_aCGH,PCR Custom Perlegen arrays nssv646081 M 0.064 95 "" nsv817790 18 38309785 38312891 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415920 S 112 1 0 "" NA11995 nsv442751 18 38310567 38311469 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv525717 18 38436604 38439784 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701880 S 2026 0 1 "" nsv833632 18 38441677 38642056 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453987,nssv1453986 M 95 0 2 "" nsv2269 18 38684928 38729716 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7385 S 9 0 1 "" NA12156 nsv519875 18 38725419 38725876 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv672212,nssv684713,nssv659267,nssv689358 M 2026 4 0 "" nsv458058 18 38732647 38770526 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535110 S 1557 0 1 "" 1780854464_A nsv522338 18 38740689 38742277 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695118 S 2026 0 1 "" nsv526691 18 38742277 38747498 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703027 S 2026 0 1 "" nsv458059 18 38747498 38774646 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535111 S 1557 0 1 "" NINDS_234 nsv458060 18 38747498 38786750 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535112 S 1557 0 1 "" 1780854118_A nsv833633 18 38812562 38977743 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453988 S 95 1 0 "" nsv131143 18 38891779 38899181 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149721 M 24 "" nsv817791 18 39006193 39042339 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418520 S 112 0 1 "" NA19193 nsv442437 18 39135060 39157329 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv520105 18 39138987 39154512 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv678619,nssv660784,nssv661201 M 2026 0 3 "" nsv833634 18 39217319 39387116 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453989 S 95 1 0 "" nsv130587 18 39285551 39286534 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149165 M 24 "" nsv526201 18 39399573 39409804 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702464 S 2026 0 1 "" nsv2270 18 39556837 39586780 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4318,nssv10154,nssv9974,nssv7386 M 9 4 0 "" NA12156,NA12878,NA18507,NA18956 nsv833635 18 39564898 39769424 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453990 S 95 1 0 "" nsv511063 18 39567899 39583141 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618677 S 4 0 0 "" CHM nsv131517 18 39707426 39707753 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150095 M 24 "" nsv520200 18 39811560 39841548 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv661678,nssv663074,nssv684643 M 2026 0 3 "" nsv510738 18 40012093 40017770 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620109 S 4 0 1 "" NA15510 nsv442438 18 40019717 40030582 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv2271 18 40042830 40087578 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7387 S 9 0 1 "" NA12156 nsv510878 18 40215209 40243938 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618629 S 4 0 0 "" CHM esv33651 18 40230856 40235930 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98868,essv98217 M 51 2 0 "" 21606,21772 nsv442439 18 40230885 40232624 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv131047 18 40378242 40378299 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149625 M 24 "" nsv2272 18 40512479 40557301 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7388 S 9 0 1 "" NA12156 nsv2273 18 40637227 40682845 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6755 S 9 0 1 "" NA12156 nsv833637 18 40684297 40838877 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453991 S 95 1 0 "" nsv2274 18 40709695 40743866 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7389 S 9 1 0 "" NA12156 nsv523324 18 40977527 40985990 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699067 S 2026 0 1 "" nsv525268 18 41002363 41728793 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701368 S 2026 1 0 "" nsv523238 18 41077512 41102316 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698965 S 2026 1 0 "" nsv132183 18 41092106 41092807 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150761 M 24 "" nsv833638 18 41138027 41328931 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453992 S 95 1 0 "" nsv2275 18 41306259 41350899 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7390 S 9 0 1 "" NA12156 nsv518479 18 41342636 41346378 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695916 S 2026 0 1 "" nsv131040 18 41599200 41599279 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149618 M 24 "" nsv2277 18 41797713 41842577 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7391 S 9 0 1 "" NA12156 nsv817792 18 41810950 41815236 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417790 S 112 1 0 "" NA12234 nsv131594 18 41977382 41977533 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150172 M 24 "" nsv2278 18 42095727 42130286 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4319 S 9 1 0 "" NA12878 nsv2279 18 42246802 42279626 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6756 S 9 1 0 "" NA12156 nsv515609 18 42477363 42517235 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv655588,nssv664081 M 2026 2 0 "" nsv9629 18 42518691 43011509 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26273,nssv27327,nssv21280,nssv27302,nssv27322,nssv25435,nssv27599,nssv24472,nssv28412,nssv23566,nssv23836,nssv24531,nssv24444,nssv25767,nssv26668,nssv27135 M 31 6 10 Samples from several populations that are part of the HapMap project. "" NA07029,NA12155,NA12802,NA18502,NA18517,NA18552,NA18564,NA18860,NA18972,NA18975,NA19007,NA19132,NA19144,NA19173,NA19221,NA19240 nsv509692 18 42559691 42607587 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621049 S 4 1 0 "" NA15510 nsv130571 18 42592432 42592768 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149149 M 24 "" nsv833639 18 42680361 42806717 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1453997,nssv1453998,nssv1453996,nssv1453995,nssv1453994,nssv1453993 M 95 0 6 "" nsv522397 18 42705642 42770086 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695177 S 2026 0 1 "" nsv509693 18 42775967 42828249 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619727,nssv621050,nssv623733 M 4 3 0 "" NA10860,NA15510,NA18994 nsv2280 18 42798587 42799404 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5696,nssv4321 M 9 2 0 "" NA12878,NA19129 nsv2281 18 42799442 42801648 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2194,nssv1403,nssv6757 M 9 3 0 "" NA12156,NA18555,NA19240 nsv2282 18 42801636 42844331 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4322 S 9 0 1 "" NA12878 nsv2283 18 42801793 42803759 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6758,nssv5697 M 9 2 0 "" NA12156,NA19129 nsv167 18 42804836 42806019 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv167 S 1 1 0 "" NA15510 nsv2284 18 42804836 42824029 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10155,nssv9851,nssv5698,nssv10986,nssv6760,nssv9976,nssv10157,nssv4323,nssv9975,nssv1404,nssv5699,nssv9328,nssv10156,nssv2195,nssv6759,nssv9549 M 9 9 0 "" NA12156,NA12878,NA15510,NA18507,NA18517,NA18555,NA18956,NA19129,NA19240 nsv833640 18 42806274 42968870 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454000,nssv1453999,nssv1454003,nssv1454001,nssv1454002,nssv1454004,nssv1454007,nssv1454008,nssv1454006,nssv1454005,nssv1454009 M 95 0 11 "" nsv471406 18 42808571 42810447 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548188,nssv548187,nssv548186 M 3 "" nsv510453 18 42996053 43002053 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618436,nssv622277 M 4 0 2 "" CHM,NA10860 nsv833641 18 43069061 43274200 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454010,nssv1454011 M 95 2 0 "" nsv510454 18 43221901 43227901 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624193,nssv622278,nssv621453 M 4 0 3 "" NA10860,NA15510,NA18994 nsv517425 18 43237379 43252022 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694123,nssv651982,nssv653139 M 2026 0 3 "" nsv521709 18 43249174 43255771 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698333 S 2026 0 1 "" nsv2285 18 43286688 43320721 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7393 S 9 1 0 "" NA12156 nsv2286 18 43435895 43480626 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7394 S 9 0 1 "" NA12156 nsv132205 18 43630559 43631027 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150783 M 24 "" nsv2288 18 43693020 43695188 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7395 S 9 1 0 "" NA12156 nsv2289 18 43823075 43857457 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1405 S 9 1 0 "" NA19240 nsv517835 18 43926938 43932477 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695239 S 2026 0 1 "" nsv527397 18 44053782 44059600 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703832 S 2026 0 1 "" nsv833642 18 44230305 44475049 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454012 S 95 1 0 "" dgv63n6 18 44250142 44250477 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv130828,nsv131499 M 24 "" nsv833643 18 44395723 44551598 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454013 S 95 1 0 "" nsv471801 18 44413298 44413438 CNV Loss Hinds et al 2006 16327809 Oligo_aCGH,PCR Custom Perlegen arrays nssv646082 M 2.680 95 "" nsv458065 18 44417970 44444719 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535113 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00862 nsv517984 18 44418885 44422574 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695397 S 2026 0 1 "" nsv2290 18 44433552 44438066 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10158 S 9 1 0 "" NA18956 nsv2291 18 44439982 44466028 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7396,nssv5700,nssv2981 M 9 3 0 "" NA12156,NA18555,NA19129 nsv509694 18 44440518 44467421 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619728,nssv623734,nssv618127 M 4 3 0 "" CHM,NA10860,NA18994 esv33629 18 44546730 44547663 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98799,essv100767 M 51 2 0 "" 21606,21656 nsv833644 18 44549759 44723913 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454014 S 95 1 0 "" nsv521210 18 44566578 44568382 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697847 S 2026 0 1 "" nsv130701 18 44587864 44587969 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149279 M 24 "" nsv515638 18 44587919 44597664 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv666126,nssv675830,nssv656074,nssv664198,nssv699334,nssv691452 M 2026 3 3 "" nsv458066 18 44594688 44613022 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535114 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00859 nsv525699 18 44597664 44601203 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701859 S 2026 0 1 "" nsv510739 18 44608951 44691272 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618955 S 4 0 1 "" NA10860 nsv438287 18 44634522 44638410 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470711,nssv470712 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA18944,NA18947 nsv833645 18 44703045 44816161 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454015 S 95 0 1 "" nsv2292 18 44783737 44829241 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6761 S 9 0 1 "" NA12156 nsv833646 18 44791561 44965941 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454016,nssv1454018,nssv1454017,nssv1454021,nssv1454020,nssv1454019 M 95 6 0 "" nsv458067 18 44841652 44904435 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535115 S 1557 0 1 "" NINDS_119 nsv833649 18 44890646 45068650 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454022 S 95 0 1 "" nsv458068 18 44921110 44971794 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535116 S 1557 0 1 "" 1782681099_A nsv520341 18 44931183 44933897 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv663075,nssv672264 M 2026 0 2 "" nsv522529 18 44931183 44974759 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705901 S 2026 0 1 "" nsv2293 18 44980965 45011785 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1406 S 9 1 0 "" NA19240 nsv522553 18 45024096 45178143 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705934 S 2026 0 1 "" nsv2294 18 45251209 45272914 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1407 S 9 0 1 "" NA19240 nsv442752 18 45251724 45257350 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv2295 18 45265141 45266966 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7397 S 9 1 0 "" NA12156 dgv64n6 18 45273850 45274188 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv131478,nsv130925 M 24 "" nsv521322 18 45278511 45284250 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697929 S 2026 1 0 "" nsv438288 18 45356000 45371907 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470713,nssv470714 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA18944,NA18947 nsv516143 18 45415626 45415731 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv672109,nssv666454,nssv667319 M 2026 0 3 "" nsv458069 18 45426728 45472119 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535117 S 1557 1 0 "" 1782681329_A nsv510455 18 45456624 45462624 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624194 S 4 0 1 "" NA18994 nsv516056 18 45548880 45619003 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv665900,nssv685664,nssv663647,nssv680967 M 2026 4 0 "" nsv516786 18 45648393 45648536 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv663373,nssv696295,nssv670836,nssv655992 M 2026 3 1 "" nsv2296 18 45715341 45753850 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7399 S 9 0 1 "" NA12156 nsv517830 18 45790820 45794097 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694169 S 2026 0 1 "" nsv833650 18 45822849 45992284 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454023 S 95 0 1 "" nsv518557 18 45845666 45853091 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696000 S 2026 0 1 "" nsv528145 18 45857288 45857463 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704692 S 2026 0 1 "" nsv510740 18 45925941 45956835 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620110 S 4 0 1 "" NA15510 nsv2297 18 45934806 45977632 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4324,nssv4644 M 9 0 2 "" NA12878,NA19129 nsv2300 18 46075696 46091043 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1408 S 9 0 1 "" NA19240 nsv2301 18 46112634 46138579 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1409 S 9 0 1 "" NA19240 nsv515672 18 46141196 46170203 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv676198,nssv676080,nssv691537,nssv686552,nssv691961,nssv692170,nssv691421,nssv687429,nssv687345,nssv685961,nssv683759,nssv674368,nssv659559,nssv681431,nssv682767,nssv672812,nssv664334,nssv684049,nssv665547,nssv696730,nssv690699,nssv698001,nssv675336,nssv679996,nssv691514,nssv661879,nssv665359,nssv667749,nssv677127,nssv680769,nssv680228,nssv678865,nssv660227,nssv688502,nssv660709,nssv685990,nssv689937,nssv681954,nssv669299,nssv684254 M 2026 2 38 "" nsv522433 18 46141196 46195712 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705789 S 2026 1 0 "" nsv519289 18 46217962 46227726 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv673636,nssv655213 M 2026 0 2 "" nsv509695 18 46218352 46239328 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619729 S 4 1 0 "" NA10860 nsv2302 18 46218628 46242797 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4325,nssv1410,nssv2196,nssv5701 M 9 4 0 "" NA12878,NA18555,NA19129,NA19240 nsv438289 18 46254963 46259069 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470716,nssv470715 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA18944,NA18947 nsv9630 18 46312475 46702834 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21799,nssv24341 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18563,NA18572 nsv833651 18 46348631 46493352 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454024 S 95 0 1 "" nsv2303 18 46404397 46439155 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1413 S 9 1 0 "" NA19240 nsv130821 18 46417354 46417424 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149399 M 24 "" nsv527714 18 46598775 46668924 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704194 S 2026 1 0 "" nsv525950 18 46734236 46746491 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702157 S 2026 0 1 "" nsv833652 18 46926935 47077089 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454026,nssv1454025 M 95 0 2 "" nsv507871 18 46929568 46935568 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617936,nssv620629,nssv619202 M 4 3 0 "" CHM,NA10860,NA15510 nsv2304 18 47019010 47063759 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7400 S 9 0 1 "" NA12156 nsv2305 18 47172879 47206753 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7401 S 9 1 0 "" NA12156 nsv833653 18 47306010 47496852 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454027 S 95 1 0 "" nsv509696 18 47455917 47482117 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621051,nssv623735 M 4 2 0 "" NA15510,NA18994 nsv2306 18 47465049 47481167 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2982,nssv5703 M 9 2 0 "" NA18555,NA19129 nsv520385 18 47471358 47471927 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694961,nssv663477,nssv675001 M 2026 0 3 "" nsv520697 18 47529967 47636360 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv674234,nssv699016,nssv682957 M 2026 2 1 "" nsv471802 18 47698735 47698919 CNV Loss Hinds et al 2006 16327809 Oligo_aCGH,PCR Custom Perlegen arrays nssv646083 M 0.841 95 "" nsv833654 18 47727651 47908331 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454028 S 95 1 0 "" nsv2307 18 47777417 47811668 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2984 S 9 1 0 "" NA18555 nsv458073 18 47786548 47918470 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535118 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00622 nsv833655 18 47798231 47973455 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454029 S 95 1 0 "" nsv510456 18 47901541 47907541 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621454,nssv618437 M 4 0 2 "" CHM,NA15510 nsv833656 18 47940870 48119502 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454030 S 95 1 0 "" nsv833657 18 48220603 48386185 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454032,nssv1454033,nssv1454031,nssv1454035,nssv1454034,nssv1454038,nssv1454037,nssv1454036 M 95 0 8 "" nsv2308 18 48244346 48254500 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1414 S 9 1 0 "" NA19240 nsv521063 18 48261248 48263676 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv681100,nssv681037 M 2026 0 2 "" nsv515816 18 48379680 48412118 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv683492,nssv664871 M 2026 2 0 "" nsv458076 18 48384335 48412076 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535120 S 1557 1 0 "" 1780854206_A nsv458079 18 48610420 48876902 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535121 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01339 nsv516994 18 48610758 48611793 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv655098,nssv686710,nssv686599,nssv667002,nssv653572 M 2026 0 5 "" nsv521932 18 48610758 48620939 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694701 S 2026 0 1 "" nsv131400 18 48716564 48717028 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149978 M 24 "" nsv2309 18 48730184 48738502 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7402 S 9 1 0 "" NA12156 nsv130811 18 48742064 48743491 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149389 M 24 "" nsv458080 18 48750682 48843081 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535122 S 1557 0 1 "" 1780854464_A nsv528217 18 48875048 48875453 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704778 S 2026 0 1 "" nsv507872 18 49175504 49181504 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619203,nssv617937 M 4 2 0 "" CHM,NA10860 nsv507873 18 49188468 49194468 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617938,nssv619204 M 4 2 0 "" CHM,NA10860 nsv510457 18 49225402 49231402 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618438 S 4 0 1 "" CHM nsv510741 18 49244819 49299194 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622734 S 4 0 1 "" NA18994 nsv2311 18 49251654 49273141 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4326 S 9 1 0 "" NA12878 nsv833658 18 49370974 49572264 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454039 S 95 1 0 "" nsv519132 18 49440541 49450390 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696612 S 2026 0 1 "" nsv442441 18 49461207 49464634 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv523580 18 49500758 49504661 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699366 S 2026 0 1 "" dgv1028e1 18 49503791 49532928 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv24340,esv1358 M 271 0 0 "" NA11882 nsv2312 18 49671865 49691438 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1415,nssv5704 M 9 2 0 "" NA19129,NA19240 nsv528642 18 49704264 49705698 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705274 S 2026 0 1 "" nsv510742 18 49719272 49800851 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622735 S 4 0 1 "" NA18994 nsv522885 18 49753121 49797200 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698541 S 2026 0 1 "" nsv438290 18 49791725 49798777 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470717 S 269 0 1 Samples from several populations that are part of the HapMap project. "" NA19116 nsv518555 18 49795877 49796651 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695998 S 2026 0 1 "" nsv458081 18 49819705 49843034 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535123 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01386 nsv130853 18 50016744 50016744 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149431 M 24 "" nsv433313 18 50059128 50074033 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463194 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA18517 nsv2313 18 50172057 50248272 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1416,nssv2197,nssv5705,nssv4327 M 9 0 4 "" NA12878,NA18555,NA19129,NA19240 nsv510743 18 50191647 50211371 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622736,nssv617433 M 4 0 2 "" CHM,NA18994 dgv65n6 18 50206962 50210962 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv130928,nsv131137 M 24 "" dgv188n21 18 50251961 50558610 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv519491,nsv528776 M 2026 0 2 "" nsv833660 18 50364118 50524795 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454040 S 95 1 0 "" nsv522262 18 50535588 50544742 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694150 S 2026 0 1 "" nsv510458 18 50649559 50655559 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621455,nssv624196,nssv622279 M 4 0 3 "" NA10860,NA15510,NA18994 nsv520160 18 50654311 50654587 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv662015,nssv680144,nssv683892,nssv671775,nssv661295 M 2026 0 5 "" nsv2314 18 50667809 50714361 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6762 S 9 0 1 "" NA12156 nsv131012 18 50973183 50973276 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149590 M 24 "" nsv2315 18 50997934 51042551 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7403 S 9 0 1 "" NA12156 nsv438291 18 51291248 51296309 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470719 S 269 0 1 Samples from several populations that are part of the HapMap project. "" NA19116 nsv131347 18 51439754 51439754 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149925 M 24 "" nsv516739 18 51467056 51467830 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv670554,nssv656210 M 2026 0 2 "" nsv833661 18 51863272 52041050 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454041,nssv1454042 M 95 2 0 "" dgv189n21 18 51998525 52004487 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv521743,nsv520113 M 2026 3 0 "" nsv132192 18 52080025 52081996 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150770 M 24 "" nsv833662 18 52125693 52259186 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454043 S 95 1 0 "" nsv2316 18 52138442 52171515 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5706 S 9 1 0 "" NA19129 nsv130735 18 52374139 52383706 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149313 M 24 "" nsv524292 18 52510578 52520793 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700193 S 2026 0 1 "" nsv521938 18 52566351 52706471 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694707 S 2026 1 0 "" nsv2317 18 52573240 52601433 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2198 S 9 1 0 "" NA18555 nsv517361 18 52575873 52716353 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv664758,nssv701245,nssv685487,nssv695550,nssv692312,nssv651817,nssv667285,nssv683803,nssv700948,nssv680705,nssv660435,nssv660866,nssv661166,nssv674091 M 2026 10 4 "" nsv817793 18 52742869 52772681 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417942 S 112 1 0 "" NA18852 nsv516762 18 52746016 52772681 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv687985,nssv663186,nssv656934,nssv670675 M 2026 0 4 "" nsv510943 18 52823934 52843923 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618678 S 4 0 0 "" CHM nsv458083 18 52865314 52892671 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535124 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01152 nsv2318 18 53069876 53103461 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7404 S 9 1 0 "" NA12156 nsv131283 18 53111329 53111442 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149861 M 24 "" esv2751777 18 53334033 53623314 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6981577,essv6981578,essv6981579,essv6981580,essv6988422 M 771 1 0 "" BEC_301 nsv458086 18 53335746 53574937 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535125 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01212 nsv527744 18 53346679 53350257 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704230 S 2026 0 1 "" nsv833663 18 53367260 53536819 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454044 S 95 1 0 "" nsv131427 18 53452306 53452531 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150005 M 24 "" nsv2319 18 53456312 53476247 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10160 S 9 1 0 "" NA18956 nsv458087 18 53476197 53503387 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535126 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00540 nsv2320 18 53564954 53596883 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10161 S 9 1 0 "" NA18956 nsv130771 18 53653454 53654524 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149349 M 24 "" nsv131251 18 53822135 53822440 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149829 M 24 "" nsv523158 18 53879847 53880500 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698867 S 2026 1 0 "" nsv2322 18 53927764 53959785 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10163 S 9 1 0 "" NA18956 nsv131445 18 53952591 53952916 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150023 M 24 "" nsv510459 18 53973708 53979708 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618439 S 4 0 1 "" CHM nsv2323 18 54009148 54043062 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2985 S 9 1 0 "" NA18555 nsv518049 18 54048700 54054001 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695460 S 2026 0 1 "" nsv528313 18 54073769 54088089 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704892 S 2026 0 1 "" dgv1029e1 18 54081842 54086942 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv21354,essv18812,essv20536 M 271 0 0 "" NA10860,NA11995,NA12248 essv18552 18 54081842 54089919 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA11993 dgv1030e1 18 54081842 54095115 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv17689,esv1043 M 271 0 0 "" NA10835 nsv442442 18 54081846 54086942 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv516529 18 54087084 54088089 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv655689,nssv684953,nssv664594,nssv653064,nssv663358,nssv690677,nssv689456,nssv653921,nssv693800,nssv679297,nssv652244,nssv689378,nssv668101,nssv674950 M 2026 0 14 "" nsv817794 18 54087084 54088089 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415921,nssv1415874,nssv1415875 M 112 0 3 "" NA10860,NA11993,NA11995 nsv458089 18 54288805 54313093 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535127 S 1557 0 1 "" NINDS_198 nsv521388 18 54357935 54364370 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697998 S 2026 0 1 "" nsv519742 18 54533105 54567673 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv678987,nssv658091 M 2026 0 2 "" nsv524760 18 54567673 54573848 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700751 S 2026 0 1 "" nsv2324 18 54629790 54637236 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7405 S 9 0 1 "" NA12156 nsv2325 18 54713349 54747591 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4328 S 9 1 0 "" NA12878 nsv833664 18 54765321 54911494 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454045 S 95 0 1 "" nsv2326 18 54792971 54806556 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7406 S 9 0 1 "" NA12156 nsv525125 18 54830479 54845759 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701193 S 2026 0 1 "" nsv526202 18 54835165 54837156 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702465 S 2026 0 1 "" nsv130933 18 54847386 54855869 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149511 M 24 "" nsv525195 18 54888767 54895646 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701276 S 2026 0 1 "" nsv527272 18 54891155 54895646 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703682 S 2026 0 1 "" nsv519425 18 54907113 54909556 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696847 S 2026 0 1 "" esv2750760 18 55000993 55001825 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98190 S 51 1 0 "" 21772 nsv132154 18 55051914 55051914 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150732 M 24 "" nsv522853 18 55146376 55183633 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698507 S 2026 0 1 "" nsv522624 18 55365136 55367006 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv706021 S 2026 0 1 "" dgv68n6 18 55516873 55526762 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv131447,nsv131005 M 24 "" dgv69n6 18 55553980 55562747 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv131630,nsv131481 M 24 "" nsv131680 18 55614674 55624505 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150258 M 24 "" dgv190n21 18 55623746 55625566 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv521292,nsv523460 M 2026 0 2 "" nsv132059 18 55633720 55633818 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150637 M 24 "" esv32948 18 55641331 55641670 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv94173 S 51 0 1 "" 22394 nsv2327 18 55661941 55696000 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7407 S 9 1 0 "" NA12156 nsv523909 18 55715245 55717819 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699752 S 2026 0 1 "" nsv523228 18 55715245 55719673 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698951 S 2026 0 1 "" nsv131097 18 55786357 55786357 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149675 M 24 "" nsv515764 18 55802280 55826838 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv664707,nssv690477,nssv684226,nssv687325,nssv668203,nssv669300,nssv684644,nssv656332,nssv693165,nssv658014,nssv674903,nssv679079,nssv689755,nssv684994 M 2026 14 0 "" nsv9631 18 55802910 55822613 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25489 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19173 nsv442443 18 55803727 55815999 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv1031e1 18 55803729 55814543 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv16388,essv8664 M 271 0 0 "" NA19101,NA19172 dgv1032e1 18 55803729 55838153 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv12122,esv1402 M 271 0 0 "" NA19173 dgv380n27 18 55804734 55814159 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv458091,nsv458090 M 1557 2 0 "" HGDP00937,HGDP01416 nsv817796 18 55804734 55814159 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416604,nssv1416606 M 112 2 0 "" NA19172,NA19173 nsv518068 18 55847024 55858970 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695481 S 2026 0 1 "" nsv515954 18 55876168 55884408 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv678273,nssv682677,nssv665440,nssv657395,nssv682804 M 2026 0 5 "" nsv833665 18 55884092 56063744 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454046 S 95 1 0 "" nsv458092 18 55890778 56445686 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535130 S 1557 0 1 "" 1782681294_A nsv2328 18 55950201 55981400 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10164 S 9 1 0 "" NA18956 nsv833666 18 55969123 56149433 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454047 S 95 0 1 "" nsv437825 18 56066949 56077242 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467706 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19142 nsv442753 18 56068921 56073194 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv517595 18 56069015 56073506 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv662530,nssv671640,nssv672049,nssv652466,nssv684754,nssv673180,nssv658210,nssv687292,nssv692328,nssv658690,nssv675933,nssv684023 M 2026 0 12 "" nsv438293 18 56072413 56074460 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470720,nssv470721 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA19140,NA19142 nsv2329 18 56134841 56148670 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9550 S 9 1 0 "" NA18507 nsv522392 18 56206085 56209691 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695172 S 2026 1 0 "" dgv1033e1 18 56251349 56278547 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv18509,esv1016 M 271 0 0 "" NA12763 dgv381n27 18 56251779 56271952 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv458093,nsv458094 M 1557 0 2 "" 1780862074_A,NINDS_56 nsv524099 18 56251779 56281356 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699974 S 2026 0 1 "" nsv527826 18 56256487 56256684 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704322 S 2026 0 1 "" nsv517625 18 56268102 56271952 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv671123,nssv666899,nssv652579,nssv669193,nssv674307,nssv674904,nssv672623,nssv671847,nssv682061,nssv686911,nssv682094,nssv665148 M 2026 0 12 "" nsv522004 18 56268102 56281356 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694774 S 2026 0 1 "" nsv527291 18 56290954 56293022 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703706 S 2026 0 1 "" nsv522707 18 56379691 56467325 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv706119 S 2026 1 0 "" nsv520502 18 56418823 56461323 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv686354,nssv705748,nssv671891,nssv686383,nssv687003 M 2026 5 0 "" nsv458095 18 56423793 56467506 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535133 S 1557 1 0 "" 1782681110_A nsv2330 18 56543756 56588977 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7409 S 9 0 1 "" NA12156 nsv833667 18 56798880 56930859 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454048 S 95 0 1 "" nsv131210 18 56842004 56842004 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149788 M 24 "" nsv833668 18 56865703 57039356 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454049 S 95 1 0 "" nsv833669 18 56994025 57140896 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454050,nssv1454051 M 95 1 1 "" nsv510460 18 57093708 57099708 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621456,nssv624197,nssv622280 M 4 0 3 "" NA10860,NA15510,NA18994 nsv521582 18 57177220 57179748 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698197 S 2026 0 1 "" nsv524346 18 57317521 57319125 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700254 S 2026 0 1 "" dgv70n6 18 57434843 57435091 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv130943,nsv131625 M 24 "" esv33325 18 57446374 57486452 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98201 S 51 0 1 "" 21772 nsv507874 18 57534996 57540996 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617939 S 4 1 0 "" CHM nsv833671 18 57740254 57928625 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454053,nssv1454054,nssv1454052 M 95 1 2 "" nsv507875 18 57855664 57861664 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623247 S 4 1 0 "" NA18994 nsv130647 18 57879650 57879760 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149225 M 24 "" esv33793 18 57880267 57880877 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99519 S 51 0 1 "" 22335 nsv131648 18 57943368 57943453 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150226 M 24 "" nsv2331 18 58249781 58283354 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4329 S 9 1 0 "" NA12878 nsv2333 18 58362063 58407635 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6763 S 9 0 1 "" NA12156 nsv524459 18 58396986 58438386 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700393 S 2026 0 1 "" nsv458097 18 58405769 58442024 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535135 S 1557 0 1 "" NINDS_61 nsv525821 18 58698041 58744472 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702007 S 2026 0 1 "" nsv2334 18 59055703 59090712 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1417 S 9 1 0 "" NA19240 nsv131879 18 59083119 59083119 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150457 M 24 "" nsv131597 18 59291511 59300913 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150175 M 24 "" nsv2335 18 59348557 59352910 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5707 S 9 1 0 "" NA19129 nsv833672 18 59438659 59590695 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454056,nssv1454055,nssv1454057 M 95 3 0 "" nsv525889 18 59663346 59766324 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702092 S 2026 0 1 "" dgv1034e1 18 59700021 59742065 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1247,essv13307,essv7976,essv14019,essv14263 M 271 0 0 "" NA19100,NA19202,NA19222,NA19240 nsv833673 18 59715286 59915235 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454058 S 95 1 0 "" essv7909 18 59715493 59742040 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19239 nsv510461 18 59829627 59835627 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618440 S 4 0 1 "" CHM nsv131936 18 59845676 59845779 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150514 M 24 "" nsv131608 18 59961754 59961851 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150186 M 24 "" esv2422190 18 60125616 60303316 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161413 S 181 1 0 "" ND04498 nsv527008 18 60192977 60193688 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703383 S 2026 0 1 "" nsv458099 18 60266055 60421595 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535136 S 1557 1 0 "" NINDS_256 nsv2336 18 60288113 60322180 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7410 S 9 1 0 "" NA12156 nsv817797 18 60332964 60342805 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418410,nssv1418409 M 112 2 0 "" NA10847,NA12239 nsv2337 18 60537805 60571091 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7411 S 9 0 1 "" NA12156 dgv1035e1 18 60558805 60600790 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv24218,esv1338 M 271 0 0 "" NA12144 nsv507876 18 60567877 60573877 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619206,nssv620631 M 4 2 0 "" NA10860,NA15510 nsv131629 18 60780421 60780421 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150207 M 24 "" nsv132171 18 60780493 60780493 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150749 M 24 "" nsv131315 18 60788258 60788258 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149893 M 24 "" nsv2338 18 60950747 60980361 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1418 S 9 1 0 "" NA19240 nsv507877 18 61004596 61010596 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620632,nssv619207,nssv623248,nssv617940 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv525667 18 61036648 61044850 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701823 S 2026 0 1 "" nsv510744 18 61245995 61265974 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618956 S 4 0 1 "" NA10860 nsv833674 18 61285329 61469771 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454059 S 95 1 0 "" nsv131801 18 61300318 61302041 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150379 M 24 "" nsv437826 18 61350545 61358853 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467707 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19161 nsv9632 18 61351102 61359126 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27175,nssv25789,nssv25512 M 31 0 3 Samples from several populations that are part of the HapMap project. "" NA19132,NA19144,NA19173 nsv438294 18 61352438 61356682 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470722,nssv470723 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA19159,NA19161 nsv130883 18 61359210 61359304 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149461 M 24 "" nsv518000 18 61364137 61426221 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695412 S 2026 0 1 "" nsv833675 18 61450050 61625687 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454060 S 95 1 0 "" nsv518272 18 61521202 61545248 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695704 S 2026 1 0 "" nsv458102 18 61533416 63820684 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535137 S 1557 0 1 "" 1780862576_A nsv833676 18 61654238 61877770 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454061,nssv1454062 M 95 2 0 "" nsv510462 18 61698720 61704720 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624198,nssv622281,nssv621457 M 4 0 3 "" NA10860,NA15510,NA18994 nsv527801 18 61782532 61793058 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704294 S 2026 0 1 "" nsv442444 18 61788030 61791107 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv510745 18 61854000 61885150 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620111 S 4 0 1 "" NA15510 nsv2339 18 61858938 61894678 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9852 S 9 0 1 "" NA18507 dgv1036e1 18 61863327 62021348 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv4749,essv6039,essv2973,essv2694,essv3473,essv12383,essv20431,essv17608,esv25,essv20964,essv19273,essv14755,essv23065,essv19963,essv24822,essv12634,essv2209,essv10164 M 271 0 0 "" NA07000,NA10830,NA10838,NA12753,NA12801,NA12812,NA12813,NA18500,NA18571,NA18620,NA18960,NA18967,NA18981,NA18992,NA19130,NA19159,NA19238 nsv458103 18 61870387 61907469 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535138 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00668 nsv9633 18 61873334 61883473 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21829,nssv21245,nssv21310,nssv28413,nssv25039,nssv21701,nssv23594,nssv27331,nssv26290 M 31 0 9 Samples from several populations that are part of the HapMap project. "" NA07029,NA10847,NA12155,NA12740,NA12802,NA12872,NA18572,NA18972,NA19221 esv32784 18 61876553 61881250 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100867,essv97066,essv99001,essv99839 M 51 4 0 "" 21656,21817,21938,22086 nsv438295 18 61880067 61881930 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470725,nssv470724 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA18852,NA19208 nsv433171 18 61880550 61881930 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463052 S 9 0 1 "" NA15510 nsv523685 18 61884005 61901405 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699490 S 2026 0 1 "" nsv9634 18 61917522 61920697 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26681,nssv21731,nssv25811,nssv25018,nssv24498,nssv27607,nssv21340,nssv21859,nssv27340,nssv27336,nssv21275,nssv23863,nssv23622,nssv25137,nssv24367,nssv24470,nssv28414,nssv26307,nssv25064,nssv24677,nssv27185 M 31 21 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA10839,NA10847,NA11830,NA12155,NA12740,NA12802,NA12872,NA18502,NA18537,NA18552,NA18563,NA18564,NA18572,NA18860,NA18972,NA18975,NA19132,NA19144,NA19221,NA19240 nsv132182 18 61917854 61920186 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150760 M 24 "" nsv442446 18 61980604 61984771 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv458104 18 61992270 62356871 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535139 S 1557 0 1 "" 1780854103_A dgv191n21 18 62002070 62002577 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv524915,nsv518146 M 2026 0 2 "" nsv526803 18 62002070 62015177 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703157 S 2026 1 0 "" nsv9636 18 62025633 62030850 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26606,nssv23650 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA18504 dgv1037e1 18 62053230 62063989 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv24637,essv24602 M 271 0 0 "" NA10846,NA12875 dgv1038e1 18 62053230 62087598 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1183,essv24456,essv20500 M 271 0 0 "" NA12865,NA12874 nsv9637 18 62057838 62063079 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21370 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA12802 nsv442754 18 62058414 62062569 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv433172 18 62058882 62061927 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463053 S 9 0 1 "" NA15510 dgv1039e1 18 62059541 62062341 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv25149,essv21098 M 271 0 0 "" NA10854,NA11839 dgv1040e1 18 62059541 62064357 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv19299,essv22622,essv24957,essv20452,essv25096,essv20866,essv21933,essv20705,essv18888,essv17864 M 271 0 0 "" NA06994,NA07022,NA10857,NA12057,NA12145,NA12154,NA12707,NA12717,NA12802,NA12814 nsv524036 18 62083778 62104703 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699900 S 2026 0 1 "" nsv833677 18 62124968 62271091 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454063,nssv1454065,nssv1454064 M 95 0 3 "" dgv1041e1 18 62157007 62341492 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2999,essv5384,essv4782,essv4361,essv19250,essv20961,esv266,essv23009,essv21110,essv20365,essv23584,essv2641 M 271 0 0 "" NA10830,NA10838,NA12006,NA12801,NA12812,NA12815,NA18563,NA18573,NA18620,NA18967,NA18981 nsv521111 18 62327345 62426942 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697793 S 2026 1 0 "" nsv520946 18 62688706 62726211 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv681527,nssv678169 M 2026 0 2 "" nsv131281 18 62693911 62694231 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149859 M 24 "" nsv522131 18 62747007 62783447 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694905 S 2026 0 1 "" nsv2340 18 62776114 62809145 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4330 S 9 1 0 "" NA12878 nsv524880 18 62929622 62933123 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700886 S 2026 0 1 "" nsv507878 18 62996975 63002975 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623249,nssv619208 M 4 2 0 "" NA10860,NA18994 nsv833678 18 63003844 63174547 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454066 S 95 1 0 "" nsv526985 18 63080092 63109788 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703358 S 2026 0 1 "" nsv833679 18 63094913 63241866 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454067 S 95 0 1 "" nsv2341 18 63096504 63130223 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2199,nssv1419 M 9 0 2 "" NA18555,NA19240 dgv1042e1 18 63098485 63123732 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1002,esv1286 M 271 0 0 "" NA18964 nsv9638 18 63109644 63119403 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27349,nssv26324,nssv26693,nssv28415,nssv24951,nssv24235,nssv24557,nssv23890,nssv21889 M 31 0 9 Samples from several populations that are part of the HapMap project. "" NA12155,NA18572,NA18853,NA18972,NA18975,NA18980,NA19007,NA19221,NA19240 nsv442755 18 63110203 63118245 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv2342 18 63163055 63195729 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1420 S 9 1 0 "" NA19240 nsv458106 18 63208880 63247032 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535140 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00153 nsv510879 18 63272046 63283751 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621643,nssv624354,nssv622422 M 4 0 0 "" NA10860,NA15510,NA18994 nsv522951 18 63312986 63321517 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698619 S 2026 0 1 "" nsv521537 18 63339146 63454257 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698153 S 2026 1 0 "" nsv2344 18 63341445 63373239 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10165 S 9 1 0 "" NA18956 nsv524650 18 63363118 63472882 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700616 S 2026 0 1 "" nsv2345 18 63430962 63489057 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1421,nssv5708 M 9 0 2 "" NA19129,NA19240 nsv817799 18 63448025 63468185 CNV Gain+Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416682,nssv1416685,nssv1416261,nssv1416408,nssv1416409 M 112 1 4 "" NA18855,NA18856,NA19119,NA19120,NA19141 dgv26n64 18 63448025 63469774 CNV Loss Wang_et_al_2007 17921354 SNP_array nsv817798,nsv817800 M 112 0 3 "" NA19116,NA19238,NA19240 dgv192n21 18 63448025 63472714 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv517463,nsv522769 M 2026 0 93 "" nsv442756 18 63455071 63466327 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv528890 18 63494969 63497384 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705574 S 2026 0 1 "" nsv833680 18 63538821 63701257 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454068 S 95 0 1 "" nsv517766 18 63606591 63715040 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700668,nssv705401,nssv677261,nssv670911,nssv653157,nssv699491 M 2026 1 5 "" nsv507879 18 63637047 63643047 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620633 S 4 1 0 "" NA15510 nsv528218 18 63815942 63843372 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704779 S 2026 0 1 "" nsv458117 18 63843275 64685792 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535143 S 1557 1 0 "" 1780854159_A dgv13e196 18 63855650 63908913 CNV Deletion Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array esv2422419,esv2422235,esv2422410,esv2422483 M 181 0 4 "" ND00672,ND01678,ND03938,ND04853 nsv527736 18 63929319 64101688 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704220 S 2026 0 1 "" nsv442447 18 63949433 63959430 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv817801 18 63951553 63959826 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416686,nssv1416687 M 112 2 0 "" NA19119,NA19120 nsv458120 18 63951553 63981586 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535145 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00019 dgv193n21 18 63984412 63984735 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv522736,nsv528384 M 2026 0 2 "" nsv526952 18 63993805 63997305 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703324 S 2026 0 1 "" nsv516694 18 64003187 64042401 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv676034,nssv660957,nssv657341,nssv673824,nssv687475,nssv693376,nssv663728,nssv677592,nssv675870,nssv697613,nssv670203,nssv691583,nssv678569,nssv657715 M 2026 0 14 "" dgv382n27 18 64003187 64050360 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv458123,nsv458124,nsv458126,nsv458128,nsv458125,nsv458122,nsv458127 M 1557 0 7 "" 1780854462_A,1780854522_A,1780854573_A,NINDS_117,NINDS_190,NINDS_20,NINDS_6 nsv833682 18 64010482 64163155 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454069 S 95 0 1 "" dgv1043e1 18 64126718 64284813 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv14236,essv13982 M 271 0 0 "" NA19098,NA19100 esv847 18 64126718 64543942 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent + Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 "" essv12591 18 64138015 64411132 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19098 nsv437827 18 64152547 64218618 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467708 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19100 nsv458134 18 64152547 64272543 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535154 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00041 nsv438296 18 64173660 64272543 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470727,nssv470728,nssv470733,nssv470734,nssv470730,nssv470732,nssv470726,nssv470731 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA19098,NA19100 nsv458135 18 64190117 64195537 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535155 S 1557 0 1 "" NINDS_67 nsv458136 18 64190117 64200056 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535156 S 1557 0 1 "" NINDS_106 nsv437828 18 64224755 64257638 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467709 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19100 dgv383n27 18 64228059 64246764 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv458138,nsv458139,nsv458137 M 1557 0 3 "" 1780862310_A,NINDS_104,NINDS_97 nsv9639 18 64307579 64310212 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27645 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18860 nsv458140 18 64311444 64340670 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535160 S 1557 0 1 "" 1780854545_A nsv833683 18 64317157 64463860 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454070 S 95 1 0 "" nsv510746 18 64348902 64368577 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617434 S 4 0 1 "" CHM nsv9640 18 64349207 64361122 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24976 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18980 dgv71n6 18 64372299 64372631 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv131794,nsv132091 M 24 "" nsv130825 18 64379938 64380315 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149403 M 24 "" nsv517811 18 64387270 64478294 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695216 S 2026 1 0 "" dgv1044e1 18 64388382 64543942 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv3549,essv13918,essv17849 M 271 0 0 "" NA10831,NA18854,NA18965 nsv438297 18 64446648 64452096 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470735 S 269 0 1 Samples from several populations that are part of the HapMap project. "" NA18964 nsv833684 18 64596565 64777467 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454071 S 95 0 1 "" nsv507880 18 64624908 64630908 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623250 S 4 1 0 "" NA18994 nsv458144 18 64651976 64741759 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535162 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00765 nsv520275 18 64681343 64721403 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv690070,nssv662321,nssv684755 M 2026 0 3 "" nsv131067 18 64723474 64723474 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149645 M 24 "" nsv528146 18 64727217 64730589 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704693 S 2026 0 1 "" nsv510463 18 64728376 64734376 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622282 S 4 0 1 "" NA10860 nsv524761 18 64797539 64846196 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700752 S 2026 0 1 "" nsv458147 18 64824572 64886115 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535163 S 1557 0 1 "" NINDS_223 nsv526548 18 64851232 64851614 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702862 S 2026 0 1 "" nsv527349 18 64851232 64857835 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703776 S 2026 0 1 "" nsv458168 18 64851232 64889909 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535165 S 1557 0 1 "" 1780854491_A nsv458171 18 64868487 65027016 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535166 S 1557 1 0 "" 1780854441_A nsv458172 18 64877649 64897188 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535167 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01368 dgv1045e1 18 64888576 64903434 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv5859,essv25103,essv1978 M 271 0 0 "" NA12814,NA18555,NA18942 dgv1046e1 18 64888576 64912007 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv618,essv7501,esv1004,essv2155,essv3324,essv2426,essv3830,essv3629,essv3257 M 271 0 0 "" NA18561,NA18948,NA18951,NA18953,NA18966,NA18967,NA18978,NA18998 nsv2346 18 64890559 64939249 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2201 S 9 0 1 "" NA18555 nsv9641 18 64894789 64908244 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23472,nssv25001,nssv23708,nssv24643,nssv24550,nssv24524,nssv27358,nssv24393 M 31 0 7 Samples from several populations that are part of the HapMap project. "" NA07029,NA18563,NA18564,NA18942,NA18972,NA18980,NA19007 esv33492 18 64894834 64907837 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98224 S 51 0 1 "" 21772 dgv384n27 18 64895268 64906488 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv458181,nsv458180 M 1557 0 2 "" 1780862470_A,HGDP00491 nsv442757 18 64897086 64904306 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv458183 18 64897188 64901130 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535171 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00967 nsv458189 18 64897188 64905087 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535177 S 1557 1 0 "" 1780862076_A dgv27n64 18 64897188 64906488 CNV Loss Wang_et_al_2007 17921354 SNP_array nsv817803,nsv817804,nsv817802 M 112 0 9 "" NA06994,NA07029,NA18577,NA18951,NA18953,NA18968,NA18972,NA18978,NA18987 dgv385n27 18 64897188 64906488 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv458205,nsv458214,nsv458208,nsv458211,nsv458193,nsv458203,nsv458192,nsv458198,nsv458204,nsv458210,nsv458209,nsv458190,nsv458215,nsv458213,nsv458188,nsv458212,nsv458202,nsv458216,nsv458206,nsv458217,nsv458187,nsv458220,nsv458191,nsv458201,nsv458194,nsv458197,nsv458195,nsv458186,nsv458199,nsv458200,nsv458184 M 1557 0 31 "" 1780854016_A,1780854512_A,1780862520_A,1782681555_A,1788485589_A,HGDP00338,HGDP00545,HGDP00553,HGDP00599,HGDP00629,HGDP00757,HGDP00778,HGDP00813,HGDP00815,HGDP00832,HGDP00845,HGDP00876,HGDP01044,HGDP01072,HGDP01096,HGDP01098,HGDP01099,HGDP01186,HGDP01220,HGDP01250,HGDP01288,HGDP01290,HGDP01293,HGDP01339,NINDS_125,NINDS_173 nsv438298 18 64897188 64906488 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470736,nssv470737,nssv470738 M 269 0 3 Samples from several populations that are part of the HapMap project. "" NA18564,NA18964,NA18976 dgv386n27 18 64897188 64909808 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv458245,nsv458246 M 1557 0 2 "" 1780862019_A,HGDP01310 nsv517241 18 64897188 64909808 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv672110,nssv668155,nssv678299,nssv666455,nssv676467,nssv685615,nssv692121,nssv673267,nssv689486,nssv671262,nssv664550,nssv681871,nssv659798,nssv693934,nssv687559,nssv678190,nssv678322,nssv686711,nssv687209,nssv670148,nssv691204,nssv654843,nssv663396,nssv653158,nssv672703,nssv652284,nssv688025,nssv667993,nssv681058,nssv688995,nssv685335,nssv664804,nssv671521,nssv670734,nssv680998,nssv685513,nssv673825,nssv653742,nssv679826,nssv677767,nssv684006,nssv661652,nssv662600,nssv670879,nssv678809,nssv656745,nssv669339,nssv675697,nssv675831,nssv657020,nssv689649,nssv677262,nssv678570,nssv666281,nssv667895,nssv668131,nssv654178,nssv651983,nssv693207,nssv672403,nssv674024,nssv689175,nssv676905,nssv686086,nssv671607,nssv657139,nssv675961,nssv679520,nssv679223,nssv665865,nssv690564,nssv680276,nssv683104,nssv664253,nssv673561,nssv654625,nssv665316,nssv689241,nssv670313,nssv666318,nssv672029,nssv667320,nssv659367,nssv652564,nssv667680,nssv693513,nssv677943,nssv657716,nssv665064,nssv686810,nssv662574,nssv657183,nssv693134,nssv681021,nssv653081,nssv692968,nssv691352,nssv686791,nssv678376,nssv680264,nssv654156,nssv675542,nssv665206,nssv660511,nssv673992,nssv674456,nssv655033,nssv673923,nssv672863 M 2026 0 109 "" nsv433314 18 64897188 64923013 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463195 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA18555 dgv1047e1 18 64897804 64903434 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2402,essv1556,essv1586,essv3587,essv6483,essv5964,essv1005 M 271 0 0 "" NA18577,NA18636,NA18964,NA18976,NA18987,NA18997,NA19012 dgv1048e1 18 64897804 64912007 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv95,essv20456,essv18880,essv3678,essv1304,essv1643,essv1688,essv5626,essv2959 M 271 0 0 "" NA06994,NA07029,NA18579,NA18943,NA18961,NA18968,NA18972,NA18980,NA19005 dgv387n27 18 64898548 64906488 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv458255,nsv458248,nsv458254,nsv458258,nsv458250,nsv458251,nsv458256,nsv458249,nsv458259,nsv458253,nsv458257,nsv458247 M 1557 0 12 "" 1780854567_A,HGDP00724,HGDP00768,HGDP01189,HGDP01319,HGDP01323,HGDP01378,NINDS_106,NINDS_120,NINDS_174,NINDS_3,NINDS_78 dgv388n27 18 64901130 64906488 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv458264,nsv458271,nsv458268,nsv458269,nsv458260,nsv458270,nsv458261,nsv458267,nsv458265,nsv458262,nsv458266 M 1557 0 11 "" 1780854105_A,1782681092_A,HGDP00550,HGDP00597,HGDP00819,HGDP00852,HGDP01059,HGDP01193,HGDP01244,HGDP01307,HGDP01326 dgv1049e1 18 64902064 64903434 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv972,essv190 M 271 0 0 "" NA18981,NA18994 dgv135e55 18 64902064 64903434 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv34330,esv35029 M 771 0 2 "" NA18964,NA18976 nsv817805 18 64902105 64906488 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417662 S 112 0 1 "" NA18994 dgv389n27 18 64902105 64909977 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv458272,nsv458273 M 1557 0 2 "" 1780854463_A,HGDP00104 esv32736 18 64953366 67496827 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98793,essv98138,essv99133,essv97234 M 51 2 2 "" 21606,21772,21938,22075 nsv507881 18 64969163 64975163 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619209 S 4 1 0 "" NA10860 nsv522658 18 65053505 65062249 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv706060 S 2026 0 1 "" nsv518376 18 65062093 65062249 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694230 S 2026 0 1 "" nsv525797 18 65062093 65062249 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701979 S 2026 1 0 "" nsv525414 18 65080512 65084648 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701538 S 2026 0 1 "" nsv458275 18 65098328 65134861 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535239 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01297 nsv524293 18 65171953 65173597 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700194 S 2026 0 1 "" nsv523105 18 65237600 65296049 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698801 S 2026 1 0 "" nsv515792 18 65300853 65302586 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv665054,nssv663729,nssv689953,nssv664805,nssv660671,nssv680771,nssv675503,nssv683003,nssv660975,nssv657442,nssv668204,nssv666127,nssv654287,nssv684673,nssv684595,nssv656094,nssv655304,nssv670347,nssv675884,nssv656356,nssv656822 M 2026 0 21 "" nsv437829 18 65302586 65311575 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467710 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19103 nsv528494 18 65332189 65340340 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705099 S 2026 0 1 "" nsv517162 18 65358832 65367619 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv684007,nssv668350,nssv690622,nssv667047,nssv690510,nssv662249,nssv670138,nssv685692,nssv661123,nssv668902,nssv652067,nssv677471,nssv673254,nssv673341,nssv658348,nssv684489,nssv675056,nssv657739,nssv687774,nssv691205,nssv668988,nssv655826,nssv666030,nssv676130,nssv674146,nssv668173,nssv668078,nssv677425,nssv686087,nssv678393,nssv654695,nssv662406,nssv656229,nssv669965,nssv669622,nssv682173,nssv683922,nssv675294,nssv664895,nssv683340,nssv677812,nssv675308,nssv669429,nssv692206,nssv664576,nssv666282,nssv654376,nssv667344,nssv688279,nssv668509,nssv656117,nssv654825,nssv662490,nssv675170,nssv687210,nssv659560,nssv669772,nssv680594,nssv657952,nssv656728,nssv675523,nssv657021,nssv680126,nssv673126,nssv652343,nssv669340,nssv652959,nssv670269,nssv686000,nssv679224,nssv666419,nssv657002,nssv669357,nssv655904,nssv667426,nssv679172,nssv676894,nssv682843,nssv686977,nssv659870,nssv671489,nssv666754,nssv665149,nssv671347,nssv675109,nssv672282,nssv667199,nssv673084,nssv678474,nssv673140,nssv666100,nssv691294,nssv703114,nssv687791,nssv657586,nssv672017,nssv653900,nssv664455,nssv671746,nssv684255,nssv672962,nssv679000,nssv688491,nssv678670,nssv666494,nssv652531 M 2026 0 106 "" nsv442449 18 65358832 65368255 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv458276 18 65359372 65361327 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535240 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00692 dgv390n27 18 65359372 65367619 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv458278,nsv458279,nsv458277 M 1557 0 3 "" 1798860567_A,HGDP00543,HGDP00545 nsv817807 18 65359372 65367619 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418032,nssv1418412,nssv1418226,nssv1417574,nssv1418215,nssv1417628,nssv1418411,nssv1415922 M 112 0 8 "" NA06991,NA06993,NA07345,NA10847,NA11994,NA12146,NA18972,NA18987 nsv510747 18 65428971 65491611 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622737 S 4 0 1 "" NA18994 nsv510464 18 65434246 65440246 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618441,nssv621458 M 4 0 2 "" CHM,NA15510 nsv131554 18 65435566 65435709 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150132 M 24 "" nsv833685 18 65440677 65581946 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454072 S 95 0 1 "" nsv520983 18 65491819 65492342 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697721 S 2026 0 1 "" nsv510748 18 65558741 65624318 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622738 S 4 0 1 "" NA18994 nsv523563 18 65613506 65624033 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699344 S 2026 0 1 "" nsv2347 18 65733845 65762749 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4331 S 9 1 0 "" NA12878 nsv510465 18 65854097 65860097 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624199 S 4 0 1 "" NA18994 nsv833686 18 65856695 66078429 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454085,nssv1454075,nssv1454101,nssv1454103,nssv1454093,nssv1454074,nssv1454081,nssv1454077,nssv1454082,nssv1454105,nssv1454104,nssv1454102,nssv1454083,nssv1454084,nssv1454080,nssv1454076,nssv1454073,nssv1454079,nssv1454086,nssv1454092,nssv1454100,nssv1454098,nssv1454095,nssv1454087,nssv1454097,nssv1454099,nssv1454078,nssv1454091,nssv1454094,nssv1454090,nssv1454088,nssv1454096,nssv1454089 M 95 33 0 "" nsv521302 18 66255570 66311554 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697908 S 2026 1 0 "" nsv458280 18 66269897 66315754 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535244 S 1557 1 0 "" 1780854103_A nsv2348 18 66274064 66292408 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1423 S 9 1 0 "" NA19240 nsv509697 18 66276899 66288668 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619730,nssv618128,nssv621052 M 4 3 0 "" CHM,NA10860,NA15510 nsv526009 18 66392248 66395965 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702237 S 2026 0 1 "" nsv526953 18 66460710 66947697 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703325 S 2026 1 0 "" nsv458281 18 66476676 67093543 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535245 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01228 nsv833687 18 66518156 66661891 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454106 S 95 1 0 "" nsv528516 18 66619564 66623186 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705124 S 2026 0 1 "" nsv833688 18 66650944 66823918 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454107 S 95 1 0 "" nsv521094 18 66728791 66739200 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697783 S 2026 0 1 "" nsv517694 18 66735202 66739200 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv669152,nssv661441,nssv652866,nssv656802,nssv667173,nssv680706,nssv677575 M 2026 2 5 "" nsv524500 18 66775973 66779058 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700442 S 2026 1 0 "" nsv2349 18 66872083 66906930 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4332 S 9 1 0 "" NA12878 nsv131232 18 66875348 66875657 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149810 M 24 "" nsv510749 18 66945895 66951767 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622739 S 4 0 1 "" NA18994 nsv817808 18 66947425 66952836 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416979 S 112 0 1 "" NA19137 nsv2350 18 66959625 66993795 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2986 S 9 1 0 "" NA18555 esv2751778 18 66996822 67218979 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6985009,essv6988931,essv6988878,essv6987141 M 771 1 0 "" SPC_31 nsv131331 18 66997722 66998055 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149909 M 24 "" dgv391n27 18 67001714 67059331 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv458283,nsv458286,nsv458284 M 1557 0 3 "" 1780862093_A,1780862180_A,1780862416_A nsv526784 18 67179878 67247130 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703136 S 2026 0 1 "" nsv458287 18 67221595 67250588 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535250 S 1557 0 1 "" NINDS_84 nsv131636 18 67229375 67230032 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150214 M 24 "" nsv833689 18 67255112 67415521 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454108 S 95 0 1 "" nsv131562 18 67294705 67294705 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150140 M 24 "" nsv507882 18 67311167 67317167 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623252 S 4 1 0 "" NA18994 nsv518500 18 67318152 67340810 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695940 S 2026 0 1 "" nsv130621 18 67319702 67319751 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149199 M 24 "" nsv520578 18 67378570 67389435 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697500 S 2026 0 1 "" nsv833690 18 67422671 67604065 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454109 S 95 0 1 "" nsv9642 18 67471918 67690349 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23500 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18942 nsv458288 18 67533577 67555724 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535251 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00891 nsv458289 18 67543840 67745379 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535252 S 1557 0 1 "" 1782681164_A nsv516800 18 67579536 67590053 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv657717,nssv671001,nssv674775,nssv677448,nssv655447,nssv683824 M 2026 0 6 "" nsv518586 18 67631759 67642697 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696033 S 2026 0 1 "" nsv517069 18 67638279 67642697 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv684617,nssv693801,nssv693876,nssv671641,nssv673536,nssv673163,nssv670139,nssv688702,nssv660123,nssv685370,nssv655063,nssv653727,nssv668491,nssv680014 M 2026 0 14 "" nsv518811 18 67638279 67645890 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696264 S 2026 0 1 "" nsv525939 18 67638279 67649369 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702145 S 2026 0 1 "" nsv469658 18 67677836 67827101 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649586 M 265 0 0 Samples from several populations that are part of the HapMap project. "" dgv1050e1 18 67700021 68125877 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1391,essv2914,esv590 M 271 0 0 "" NA19007 esv35041 18 67728273 68039117 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6987379,essv6987378,essv6978356,essv6978357,essv6978358 M 771 0 1 "" NA19007 nsv9643 18 67738923 68035868 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24669,nssv28416 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA19007,NA19221 nsv522916 18 67922339 67933066 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698577 S 2026 0 1 "" nsv833691 18 67947531 68119688 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454110 S 95 1 0 "" esv33202 18 68015384 68085984 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98575 S 51 0 1 "" 22085 nsv131098 18 68047740 68048055 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149676 M 24 "" nsv833693 18 68218849 68404990 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454111,nssv1454112 M 95 2 0 "" nsv520557 18 68288505 68297364 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697484 S 2026 0 1 "" nsv433173 18 68337587 68341352 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463054 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA18956 nsv132196 18 68479688 68484483 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150774 M 24 "" nsv526088 18 68534099 68534238 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702334 S 2026 0 1 "" dgv1051e1 18 68579533 68585381 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1376,essv14245 M 271 0 0 "" NA19100 nsv9644 18 68583275 68586066 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21919 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18572 nsv2351 18 68610050 68645847 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7412 S 9 0 1 "" NA12156 nsv526339 18 68627019 68627217 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702631 S 2026 0 1 "" nsv526519 18 68640760 68641554 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702830 S 2026 0 1 "" nsv458290 18 68644727 68663818 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535253 S 1557 0 1 "" 1780854384_A nsv523159 18 68715424 68717331 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698868 S 2026 1 0 "" nsv2352 18 68780594 68802873 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6764,nssv5709,nssv1424,nssv10166 M 9 4 0 "" NA12156,NA18956,NA19129,NA19240 nsv515817 18 68783679 68792198 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv675962,nssv683493,nssv664896,nssv682174,nssv664872,nssv684865,nssv674457,nssv668102 M 2026 0 8 "" nsv833694 18 68798182 68946307 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454113 S 95 1 0 "" nsv520259 18 68871791 68876810 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697312 S 2026 0 1 "" nsv458291 18 68896604 68926719 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535254 S 1557 0 1 "" 1782681080_A nsv131356 18 68917641 68920240 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149934 M 24 "" esv2422238 18 68919651 69057023 CNV Deletion Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161371 S 181 0 1 "" ND00709 nsv458292 18 68931729 69047309 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535255 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00218 nsv131618 18 68990158 68990158 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150196 M 24 "" nsv458293 18 69065051 69134108 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535256 S 1557 0 1 "" NINDS_89 nsv131376 18 69068547 69068547 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149954 M 24 "" nsv131514 18 69092571 69098685 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150092 M 24 "" nsv438299 18 69102094 69105459 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470742,nssv470739 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA12801,NA12812 nsv524088 18 69114690 69223208 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699960 S 2026 0 1 "" nsv131189 18 69129843 69130157 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149767 M 24 "" nsv518789 18 69216761 69217997 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696242 S 2026 0 1 "" nsv519721 18 69266063 69267213 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv657916,nssv672135 M 2026 0 2 "" nsv521197 18 69282169 69306485 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv691060,nssv684475 M 2026 0 2 "" nsv528650 18 69397065 69404448 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705283 S 2026 1 0 "" nsv2353 18 69420105 69464776 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7413 S 9 0 1 "" NA12156 nsv510466 18 69449099 69455099 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622283,nssv618442,nssv621459 M 4 0 3 "" CHM,NA10860,NA15510 nsv522751 18 69593055 69597863 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698387 S 2026 0 1 "" nsv507883 18 69640887 69646887 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620634 S 4 1 0 "" NA15510 nsv2355 18 69887559 69932279 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7414 S 9 0 1 "" NA12156 nsv519101 18 70066567 70073769 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696575 S 2026 0 1 "" nsv2356 18 70102886 70137952 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1425 S 9 1 0 "" NA19240 nsv524678 18 70184763 70184882 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700649 S 2026 1 0 "" nsv527671 18 70233924 70294366 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704146 S 2026 1 0 "" nsv458298 18 70264181 70285832 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535258 S 1557 1 0 "" 1780862575_A nsv2357 18 70474523 70508506 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4333 S 9 1 0 "" NA12878 nsv2358 18 70522053 70555629 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7415 S 9 1 0 "" NA12156 nsv523996 18 70647870 70654268 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699856 S 2026 1 0 "" nsv516801 18 70742196 70747030 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv671002,nssv688294 M 2026 0 2 "" nsv2359 18 70753969 70798864 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2202 S 9 0 1 "" NA18555 nsv518563 18 70830929 70834198 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696007 S 2026 1 0 "" nsv2360 18 70901581 70946896 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5711 S 9 0 1 "" NA19129 nsv131351 18 70908553 70908638 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149929 M 24 "" nsv130683 18 70909002 70909051 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149261 M 24 "" nsv833695 18 70923918 71118616 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454114 S 95 1 0 "" nsv518899 18 70967007 70970501 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694287 S 2026 1 0 "" nsv524451 18 70967007 70977103 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700384 S 2026 0 1 "" nsv131791 18 71020567 71020567 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150369 M 24 "" nsv132104 18 71072490 71078734 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150682 M 24 "" nsv132006 18 71090614 71090705 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150584 M 24 "" nsv458299 18 71103295 71119261 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535259 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00894 nsv2361 18 71130955 71176149 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7416 S 9 0 1 "" NA12156 nsv519850 18 71132478 71134403 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697085 S 2026 0 1 "" nsv507884 18 71219416 71225416 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623253,nssv619210,nssv620635 M 4 3 0 "" NA10860,NA15510,NA18994 nsv509699 18 71410245 71425657 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618129 S 4 1 0 "" CHM nsv130731 18 71464636 71464821 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149309 M 24 "" nsv519728 18 71480016 71481322 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697015 S 2026 1 0 "" nsv458300 18 71503505 71586126 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535260 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00199 nsv131508 18 71553280 71553347 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150086 M 24 "" nsv131535 18 71699010 71699334 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150113 M 24 "" nsv833696 18 71838977 71930686 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454116,nssv1454115,nssv1454118,nssv1454117,nssv1454120,nssv1454119,nssv1454122,nssv1454121,nssv1454123 M 95 9 0 "" nsv507885 18 71848199 71854199 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617941,nssv623254,nssv620636,nssv619211 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv525632 18 71869832 71873772 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701785 S 2026 1 0 "" nsv529011 18 71869832 71876148 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705721 S 2026 0 1 "" nsv527178 18 71869875 71876148 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703574 S 2026 1 0 "" nsv2362 18 71900793 71907711 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10167 S 9 1 0 "" NA18956 nsv458301 18 71960066 71984919 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535261 S 1557 0 1 "" 1780854288_A nsv523904 18 72198776 72198871 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699747 S 2026 0 1 "" nsv131595 18 72264494 72264558 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150173 M 24 "" nsv458302 18 72298989 72325606 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535262 S 1557 0 1 "" 1780862586_A nsv131684 18 72308029 72308190 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150262 M 24 "" nsv131705 18 72308189 72308350 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150283 M 24 "" nsv458303 18 72308578 72325606 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535263 S 1557 0 1 "" 1780862444_A nsv458305 18 72325606 72362054 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535264 S 1557 0 1 "" NINDS_273 nsv524820 18 72356083 72362054 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700815 S 2026 0 1 "" nsv833697 18 72365502 72533452 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454124 S 95 0 1 "" nsv131694 18 72426283 72426854 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150272 M 24 "" nsv510467 18 72446708 72452708 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618443 S 4 0 1 "" CHM nsv131503 18 72452631 72452631 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150081 M 24 "" dgv194n21 18 72537956 72600805 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv519497,nsv523132 M 2026 2 0 "" nsv458308 18 72537956 72600805 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535265 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01319 nsv526677 18 72537956 72600805 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703009 S 2026 0 1 "" dgv195n21 18 72565690 72600805 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv519619,nsv518917 M 2026 0 2 "" nsv2363 18 72785291 72793785 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5712 S 9 1 0 "" NA19129 nsv526525 18 72833263 72834215 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702837 S 2026 0 1 "" nsv130931 18 72886473 72886473 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149509 M 24 "" esv2751779 18 73012400 73487286 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6981991,essv6981993,essv6981992,essv6981990,essv6981989 M 771 1 0 "" BEC_510 nsv131118 18 73039868 73039868 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149696 M 24 "" dgv1052e1 18 73047414 73306926 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv18658,essv7569,essv22155,essv23653,essv24784,esv175,essv13899,essv18106,essv7715,essv18322,essv5409,essv7856,essv17607,essv2286 M 271 0 0 "" NA10846,NA10857,NA10860,NA10863,NA11993,NA12234,NA12753,NA18545,NA18558,NA18563,NA18633,NA18854,NA18966 nsv518302 18 73055415 73058030 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695733 S 2026 0 1 "" nsv2364 18 73076907 73109120 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10168 S 9 1 0 "" NA18956 dgv196n21 18 73083303 73137020 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv518395,nsv523393 M 2026 2 0 "" nsv130653 18 73093924 73093998 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149231 M 24 "" esv33903 18 73116034 73134527 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101704 S 51 0 1 "" 21909 nsv131760 18 73135009 73135199 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150338 M 24 "" nsv833698 18 73172599 73312412 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454125 S 95 1 0 "" nsv131247 18 73288111 73297822 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149825 M 24 "" nsv833699 18 73339212 73379768 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454133,nssv1454131,nssv1454132,nssv1454135,nssv1454136,nssv1454134,nssv1454130,nssv1454127,nssv1454129,nssv1454128,nssv1454126 M 95 7 4 "" nsv131431 18 73348464 73348464 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150009 M 24 "" nsv517996 18 73460585 73547284 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695408 S 2026 1 0 "" nsv131731 18 73511094 73511144 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150309 M 24 "" nsv516261 18 73541346 73545542 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv679080,nssv667149 M 2026 0 2 "" nsv2366 18 73641573 73670484 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7418 S 9 0 1 "" NA12156 nsv131401 18 73767982 73767982 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149979 M 24 "" nsv527971 18 73953062 73953169 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704484 S 2026 0 1 "" nsv519693 18 73953062 73958207 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694342 S 2026 0 1 "" nsv522352 18 73970670 73971993 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695131 S 2026 0 1 "" nsv509700 18 74094998 74102578 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619732 S 4 1 0 "" NA10860 nsv2367 18 74108474 74143162 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1426 S 9 1 0 "" NA19240 dgv1053e1 18 74125373 74378820 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv15088,essv20223,esv385,essv16200,essv13532 M 271 0 0 "" NA12144,NA19129,NA19160,NA19161 nsv130878 18 74169674 74173564 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149456 M 24 "" nsv2368 18 74222829 74247926 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6765 S 9 0 1 "" NA12156 nsv9645 18 74229210 74234412 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27345,nssv24636,nssv21791,nssv26341,nssv24695,nssv25043,nssv25089,nssv21949,nssv21305,nssv23917,nssv26704,nssv27195,nssv28417,nssv24261,nssv24419,nssv27367,nssv23901,nssv27653,nssv25833,nssv23528 M 31 7 13 Samples from several populations that are part of the HapMap project. "" NA10847,NA10863,NA12155,NA12740,NA12872,NA18502,NA18537,NA18563,NA18564,NA18572,NA18853,NA18860,NA18942,NA18972,NA18975,NA19007,NA19132,NA19144,NA19221,NA19240 nsv517617 18 74244128 74278929 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv658169,nssv653365,nssv667994,nssv701361,nssv683519,nssv668700,nssv685066,nssv693633,nssv676297,nssv663830,nssv655503,nssv689790,nssv686712,nssv684525,nssv687973,nssv662425,nssv661017,nssv684545,nssv656729,nssv677300,nssv652554,nssv673506,nssv678345,nssv666283,nssv652532,nssv680999,nssv690817,nssv691651 M 2026 0 28 "" nsv817809 18 74258734 74260996 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418111,nssv1418110 M 112 0 2 "" NA10859,NA11881 nsv2369 18 74278870 74323832 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7419 S 9 0 1 "" NA12156 nsv132118 18 74282962 74282962 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150696 M 24 "" nsv2370 18 74288034 74321378 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7420 S 9 1 0 "" NA12156 nsv131570 18 74290517 74290517 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150148 M 24 "" nsv9647 18 74294454 74299615 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27205,nssv23953,nssv27376,nssv26745,nssv24317,nssv27354,nssv25114,nssv25854,nssv28418,nssv24703,nssv24721,nssv27311 M 31 4 8 Samples from several populations that are part of the HapMap project. "" NA07048,NA10839,NA12740,NA18502,NA18517,NA18853,NA18972,NA19007,NA19132,NA19144,NA19221,NA19240 nsv509703 18 74308970 74405562 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619733,nssv621053 M 4 2 0 "" NA10860,NA15510 nsv9648 18 74345318 74348255 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25026 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18980 nsv130976 18 74354442 74354561 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149554 M 24 "" nsv2371 18 74362481 74385085 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10169,nssv4334 M 9 2 0 "" NA12878,NA18956 nsv9649 18 74371016 74381593 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21335,nssv24496,nssv25139,nssv25875,nssv26619,nssv21821,nssv25192,nssv27320,nssv24343,nssv24010,nssv25068,nssv23736,nssv25051,nssv24747,nssv27385,nssv24445,nssv24662,nssv21979,nssv23928 M 31 16 3 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10847,NA10863,NA11830,NA12740,NA12872,NA18504,NA18517,NA18537,NA18552,NA18563,NA18564,NA18572,NA18853,NA18972,NA18980,NA19007,NA19144 nsv437178 18 74390771 74398377 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467059 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA10851 nsv9650 18 74390826 74398660 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27329,nssv21851,nssv24772,nssv25896,nssv27661,nssv22009,nssv21365,nssv25076,nssv25217,nssv24522,nssv25535,nssv21460,nssv25093,nssv24037,nssv26632,nssv27215,nssv27424,nssv26756,nssv25194,nssv23556,nssv23955,nssv24688,nssv24471,nssv23763,nssv28419,nssv24729,nssv26357,nssv23944,nssv27363,nssv24369 M 31 30 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10847,NA10863,NA11830,NA12155,NA12740,NA12802,NA12872,NA18502,NA18504,NA18517,NA18537,NA18552,NA18563,NA18564,NA18572,NA18853,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19144,NA19173,NA19221,NA19240 nsv527813 18 74391061 74397540 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704307 S 2026 0 1 "" nsv833700 18 74393755 74532331 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454137 S 95 1 0 "" nsv438300 18 74394310 74397540 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470743,nssv470744 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA10851,NA12056 nsv458310 18 74400046 74449768 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535266 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00794 nsv2372 18 74479797 74497358 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1427 S 9 1 0 "" NA19240 esv2751780 18 74485052 74613300 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6981316,essv6985542,essv6985543,essv6981317,essv6981318 M 771 1 0 "" BEC_385 nsv130575 18 74493868 74493961 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149153 M 24 "" nsv2373 18 74502533 74525402 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2987 S 9 1 0 "" NA18555 nsv130989 18 74512435 74512435 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149567 M 24 "" nsv130937 18 74514630 74514734 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149515 M 24 "" nsv458311 18 74566171 74592329 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535267 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00898 nsv131862 18 74615355 74615506 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150440 M 24 "" nsv526473 18 74634753 74636680 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702779 S 2026 0 1 "" nsv2374 18 74658455 74683343 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5713 S 9 1 0 "" NA19129 nsv433452 18 74693156 74702191 CNV Gain Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463333 S 9 1 0 Samples from several populations that are part of the HapMap project. "" NA12156 nsv130899 18 74700154 74700397 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149477 M 24 "" nsv131111 18 74700276 74700397 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149689 M 24 "" nsv132206 18 74727666 74727790 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150784 M 24 "" nsv458312 18 74735554 74756771 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535268 S 1557 0 1 "" 1780862444_A nsv517026 18 74762665 74766163 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv658853,nssv677340,nssv681642,nssv680646,nssv668757,nssv670363,nssv703272,nssv678551,nssv680669,nssv686662,nssv683559,nssv665332,nssv691768,nssv658430,nssv678415,nssv652395,nssv655236,nssv678696,nssv661049,nssv660352,nssv667048,nssv692628,nssv675148,nssv661561,nssv689843,nssv668903,nssv672783,nssv667653,nssv671149,nssv685980,nssv653637,nssv660717,nssv677301,nssv669320,nssv660305,nssv652689 M 2026 1 35 "" nsv522228 18 74762665 74777090 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695005 S 2026 0 1 "" nsv442450 18 74763700 74765854 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv521948 18 74763702 74769610 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694717 S 2026 0 1 "" nsv521955 18 74776799 74788302 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694724 S 2026 0 1 "" nsv2375 18 74782564 74815685 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4335 S 9 1 0 "" NA12878 nsv131811 18 74810764 74810923 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150389 M 24 "" nsv458313 18 74812012 74883300 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535269 S 1557 0 1 "" 1780862415_A nsv2377 18 74852255 74886439 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1428,nssv9331,nssv10170 M 9 3 0 "" NA18517,NA18956,NA19240 nsv510947 18 74861809 74889275 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618679 S 4 0 0 "" CHM nsv509704 18 74873869 74938226 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619735,nssv623738,nssv619734 M 4 2 0 "" NA10860,NA18994 nsv2378 18 74891685 74906441 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2203 S 9 1 0 "" NA18555 nsv131086 18 74894212 74894803 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149664 M 24 "" nsv438301 18 74911018 74925033 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470745 S 269 0 1 Samples from several populations that are part of the HapMap project. "" NA18582 nsv2379 18 75008652 75034510 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2988 S 9 1 0 "" NA18555 nsv509705 18 75056531 75065875 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623739 S 4 1 0 "" NA18994 nsv131327 18 75096638 75096638 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149905 M 24 "" nsv130781 18 75096760 75096760 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149359 M 24 "" nsv131643 18 75158735 75159972 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150221 M 24 "" nsv131751 18 75169628 75170491 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150329 M 24 "" nsv509706 18 75176077 75307146 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621055,nssv621054 M 4 1 0 "" NA15510 nsv132147 18 75207393 75207531 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150725 M 24 "" nsv131338 18 75207570 75207708 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149916 M 24 "" nsv131739 18 75224576 75224687 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150317 M 24 "" nsv130751 18 75235246 75235337 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149329 M 24 "" nsv2380 18 75240545 75274429 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5714 S 9 1 0 "" NA19129 nsv525694 18 75256172 75822113 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701853 S 2026 0 1 "" nsv833701 18 75275649 75427593 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454140,nssv1454138,nssv1454139 M 95 0 3 "" nsv458315 18 75293104 75321604 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535270 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00372 nsv522375 18 75300466 75308112 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695154 S 2026 0 1 "" nsv522642 18 75301833 75312752 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv706042 S 2026 0 1 "" nsv518913 18 75301833 75352049 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696372 S 2026 0 1 "" nsv509707 18 75314994 75440438 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621056 S 4 1 0 "" NA15510 nsv523985 18 75328464 75351626 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699841 S 2026 0 1 "" nsv131115 18 75334659 75334738 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149693 M 24 "" nsv131042 18 75334659 75335534 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149620 M 24 "" nsv131868 18 75349238 75349287 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150446 M 24 "" nsv130687 18 75386353 75386550 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149265 M 24 "" nsv131832 18 75411134 75411183 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150410 M 24 "" nsv131023 18 75430869 75430869 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149601 M 24 "" nsv509708 18 75459644 75532471 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619736,nssv621057 M 4 2 0 "" NA10860,NA15510 nsv2381 18 75462992 75491762 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6766,nssv5715 M 9 2 0 "" NA12156,NA19129 nsv132053 18 75481211 75481330 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150631 M 24 "" nsv519406 18 75491331 75758307 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696836 S 2026 1 0 "" nsv509709 18 75546356 75699363 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619738 S 4 1 0 "" NA10860 nsv2382 18 75604004 75634660 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7421 S 9 0 1 "" NA12156 nsv458316 18 75609169 75649547 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535271 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00954 nsv132060 18 75647137 75647203 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150638 M 24 "" nsv131255 18 75647329 75647395 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149833 M 24 "" nsv2383 18 75657193 75690224 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5716 S 9 1 0 "" NA19129 nsv469607 18 75685835 75831017 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649723 M 265 0 1 Samples from several populations that are part of the HapMap project. "" nsv130923 18 75692301 75692765 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149501 M 24 "" nsv509710 18 75704886 75811038 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619739 S 4 1 0 "" NA10860 nsv131019 18 75726401 75726566 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149597 M 24 "" nsv130639 18 75726677 75726966 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149217 M 24 "" nsv520750 18 75731061 75738412 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv674978,nssv686764 M 2026 0 2 "" nsv130646 18 75748043 75748181 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149224 M 24 "" nsv130913 18 75755294 75756061 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv149491 M 24 "" nsv131578 18 75788308 75788372 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv150156 M 24 "" nsv458317 18 75997233 76075974 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535272 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00752 nsv507886 18 76046976 76052976 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619212,nssv620638 M 4 2 0 "" NA10860,NA15510 nsv9651 19 6284 128093 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26645,nssv26767,nssv27669,nssv27372,nssv25143,nssv28420,nssv25558,nssv27433,nssv24395,nssv25118,nssv25917,nssv24548,nssv27677,nssv24755,nssv27225,nssv24064,nssv26403,nssv24797,nssv23790,nssv26658,nssv27338,nssv23971,nssv21490,nssv22039,nssv24012 M 31 20 3 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10863,NA12155,NA12802,NA18502,NA18504,NA18517,NA18537,NA18552,NA18572,NA18853,NA18860,NA18972,NA18975,NA19007,NA19132,NA19144,NA19173,NA19221,NA19240 nsv471520 19 11002 210400 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv547892,nssv547891,nssv547893 M 3 "" nsv471407 19 61679 62596 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548190,nssv548191,nssv548192 M 3 "" dgv1054e1 19 183069 327646 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv22821,esv265 M 271 0 0 "" NA12004 nsv833702 19 189657 353129 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454141 S 95 0 1 "" esv2422333 19 202718 355517 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161416 S 181 1 0 "" ND01666 nsv9652 19 217988 226953 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25101,nssv27235 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA18980,NA19132 nsv138494 19 220752 220752 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv157072 M 24 "" nsv9653 19 240981 243869 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25219 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA12740 nsv523433 19 243082 245526 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699188 S 2026 0 1 "" nsv518514 19 244913 252619 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695954 S 2026 0 1 "" nsv9654 19 247972 253507 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27347 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18517 nsv9655 19 251836 255707 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21520,nssv25244,nssv26671,nssv25126 M 31 4 0 Samples from several populations that are part of the HapMap project. "" NA12740,NA12802,NA18504,NA18980 nsv9656 19 254742 264997 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26418 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA12155 nsv138180 19 263122 263178 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv156758 M 24 "" nsv9659 19 273796 276648 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27381,nssv25151 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA18502,NA18980 nsv509711 19 305479 337439 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619740 S 4 1 0 "" NA10860 nsv9660 19 309687 316399 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26684,nssv27356,nssv27420,nssv24091,nssv27442,nssv22069,nssv21455,nssv25938,nssv23584,nssv26778,nssv26433,nssv24497,nssv24039,nssv21881,nssv21550,nssv23817,nssv24421,nssv27685,nssv27245,nssv24634,nssv24822,nssv25581,nssv24780,nssv24028,nssv24714,nssv28451,nssv25198,nssv25206 M 31 0 28 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10847,NA10863,NA12155,NA12802,NA12872,NA18502,NA18504,NA18517,NA18537,NA18552,NA18563,NA18564,NA18572,NA18853,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19144,NA19173,NA19221,NA19240 nsv138274 19 311057 312400 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv156852 M 24 "" nsv522660 19 314127 315695 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv706062 S 2026 0 1 "" nsv9661 19 331314 333948 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26696,nssv24118,nssv24447,nssv25269,nssv26789,nssv25989,nssv24805,nssv24847,nssv23844,nssv24066 M 31 10 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10863,NA12740,NA18504,NA18853,NA19007,NA19144,NA19240 nsv138495 19 331876 332023 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv157073 M 24 "" nsv817810 19 339413 369178 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417943 S 112 0 1 "" NA18853 nsv509712 19 342096 509643 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619741 S 4 1 0 "" NA10860 nsv137977 19 349537 349623 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv156555 M 24 "" nsv137957 19 349566 349623 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv156535 M 24 "" nsv2384 19 381805 395497 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4336 S 9 1 0 "" NA12878 nsv433453 19 382359 403577 CNV Gain Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463334 S 9 1 0 Samples from several populations that are part of the HapMap project. "" NA19240 nsv138298 19 403564 403628 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv156876 M 24 "" nsv138338 19 420026 420026 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv156916 M 24 "" nsv138206 19 424627 424876 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv156784 M 24 "" esv33417 19 425104 469906 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93564,essv92516,essv96387 M 51 1 2 "" 22128,22233,22371 nsv516566 19 446722 476739 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv660354,nssv669213,nssv677303 M 2026 3 0 "" nsv138339 19 476015 476181 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv156917 M 24 "" nsv482205 19 568223 584568 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558566 S 1 1 0 "" KB1 nsv138027 19 618202 618263 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv156605 M 24 "" nsv458320 19 681235 703878 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535273 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00604 nsv520063 19 702553 703878 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697202 S 2026 0 1 "" nsv458321 19 748079 801574 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535274 S 1557 0 1 "" 1780862100_A nsv138320 19 792457 792540 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv156898 M 24 "" nsv2385 19 809907 845070 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2204,nssv7422,nssv4337,nssv1429,nssv5717 M 9 5 0 "" NA12156,NA12878,NA18555,NA19129,NA19240 nsv9662 19 844394 1268739 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21911,nssv24523,nssv27429,nssv25242,nssv28452,nssv22129,nssv24830,nssv26448 M 31 8 0 Samples from several populations that are part of the HapMap project. "" NA10839,NA11830,NA12155,NA12872,NA18502,NA18563,NA18572,NA19221 nsv482206 19 868342 872015 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558567 S 1 1 0 "" KB1 nsv469845 19 902640 1095485 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649866 M 265 0 16 Samples from several populations that are part of the HapMap project. "" essv258 19 902641 1095485 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18948 nsv833704 19 902641 1095485 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454143,nssv1454142,nssv1454145,nssv1454144 M 95 4 0 "" dgv1055e1 19 902641 1495933 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv14884,esv107,essv3812 M 271 0 0 "" NA18522,NA18943 nsv138039 19 924126 929272 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv156617 M 24 "" nsv138364 19 942561 942673 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv156942 M 24 "" nsv516646 19 1061829 1097100 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv657535,nssv669846,nssv672733,nssv693678,nssv680883,nssv685991,nssv670935,nssv655651,nssv673238,nssv677472,nssv685893,nssv680239,nssv687548,nssv673447,nssv658752 M 2026 0 15 "" nsv2386 19 1083296 1118729 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6767,nssv2989,nssv5718,nssv10171 M 9 4 0 "" NA12156,NA18555,NA18956,NA19129 nsv526080 19 1083637 1103656 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702324 S 2026 0 1 "" nsv138169 19 1116691 1116831 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv156747 M 24 "" nsv138017 19 1229240 1229240 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv156595 M 24 "" esv32942 19 1271267 1950204 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101457,essv100994,essv95088,essv95120,essv94703,essv94429,essv95378,essv97304,essv101655,essv95841,essv94554,essv98974,essv92897,essv95945,essv93473,essv94864,essv94882,essv92605,essv96506,essv99346,essv99290,essv97629,essv100494 M 51 12 9 "" 21603,21693,21721,21791,21808,21872,21879,21909,21911,21932,21938,21939,22127,22128,22231,22233,22261,22275,22278,22298 nsv7304 19 1289603 1322592 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9332 S 9 0 0 "" NA18517 nsv138487 19 1319821 1319906 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv157065 M 24 "" essv18235 19 1331124 1495933 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12057 nsv833705 19 1331124 1495933 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454148,nssv1454153,nssv1454158,nssv1454149,nssv1454152,nssv1454154,nssv1454150,nssv1454157,nssv1454156,nssv1454155,nssv1454159,nssv1454160,nssv1454147,nssv1454151,nssv1454146,nssv1454161,nssv1454163,nssv1454162 M 95 0 18 "" nsv482207 19 1334883 1346588 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558568 S 1 1 0 "" KB1 nsv9663 19 1351723 1354361 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24055,nssv24855,nssv24740 M 31 3 0 Samples from several populations that are part of the HapMap project. "" NA10839,NA18564,NA18975 nsv817811 19 1395419 1426391 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417241 S 112 0 1 "" NA18577 nsv458324 19 1476307 1501650 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535275 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00654 dgv197n21 19 1487534 1491506 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv526214,nsv520030 M 2026 0 2 "" nsv138241 19 1494371 1496308 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv156819 M 24 "" nsv517758 19 1501650 1523369 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv673051,nssv653140,nssv683128 M 2026 0 3 "" nsv138347 19 1578783 1578957 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv156925 M 24 "" nsv527350 19 1635137 1646176 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703777 S 2026 0 1 "" nsv2388 19 1658798 1692437 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2990 S 9 1 0 "" NA18555 nsv521005 19 1733798 1735944 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv679662,nssv680321,nssv686001,nssv684618 M 2026 0 4 "" nsv520344 19 1779948 1784338 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697360 S 2026 0 1 "" nsv482208 19 1827975 1836518 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558569 S 1 1 0 "" KB1 nsv518629 19 1855612 1861106 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696079 S 2026 0 1 "" nsv138132 19 1919250 1919250 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv156710 M 24 "" nsv458325 19 1994271 2029488 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535276 S 1557 0 1 "" 1780862229_A nsv523590 19 2054962 2060157 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699380 S 2026 0 1 "" nsv833706 19 2082210 2200763 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454176,nssv1454168,nssv1454170,nssv1454172,nssv1454174,nssv1454173,nssv1454177,nssv1454175,nssv1454178,nssv1454171,nssv1454169,nssv1454167,nssv1454166,nssv1454164,nssv1454165 M 95 0 15 "" nsv833707 19 2138091 2323221 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454183,nssv1454179,nssv1454181,nssv1454180,nssv1454182,nssv1454187,nssv1454195,nssv1454184,nssv1454186,nssv1454185,nssv1454191,nssv1454189,nssv1454194,nssv1454190,nssv1454188,nssv1454193,nssv1454192 M 95 0 17 "" nsv2389 19 2157861 2191688 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2991 S 9 1 0 "" NA18555 nsv509714 19 2470627 2745401 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623742,nssv623741 M 4 1 0 "" NA18994 nsv833708 19 2484003 2613636 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454206,nssv1454197,nssv1454203,nssv1454196,nssv1454202,nssv1454198,nssv1454200,nssv1454204,nssv1454205,nssv1454207,nssv1454199,nssv1454201 M 95 0 12 "" nsv526820 19 2485518 2485581 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703174 S 2026 0 1 "" nsv458326 19 2524995 2570143 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535277 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00910 nsv137989 19 2664054 2664405 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv156567 M 24 "" nsv509715 19 2746592 2821099 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623743 S 4 1 0 "" NA18994 nsv528638 19 2778300 2797557 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705269 S 2026 1 0 "" nsv482209 19 2792482 2805033 CNV Loss Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558570 S 1 0 1 "" KB1 nsv2390 19 2899212 2911788 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7424 S 9 0 1 "" NA12156 nsv833709 19 2901242 3019607 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454209,nssv1454208 M 95 0 2 "" dgv47n68 19 2928774 3113119 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH nsv833710,nsv833711 M 95 0 15 "" nsv2391 19 2956881 2988947 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5719 S 9 1 0 "" NA19129 nsv509716 19 3028660 3213651 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619742,nssv623744,nssv621058,nssv623745 M 4 3 0 "" NA10860,NA15510,NA18994 nsv138042 19 3124380 3126819 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv156620 M 24 "" nsv833712 19 3181780 3316288 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454229,nssv1454228,nssv1454226,nssv1454227,nssv1454230,nssv1454231,nssv1454225 M 95 0 7 "" nsv509717 19 3222018 3343048 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623747,nssv623746 M 4 1 0 "" NA18994 nsv138276 19 3257044 3257044 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv156854 M 24 "" nsv138150 19 3262072 3262193 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv156728 M 24 "" nsv526602 19 3403683 3442368 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702922 S 2026 0 1 "" nsv833713 19 3515421 3578359 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454252,nssv1454257,nssv1454236,nssv1454249,nssv1454251,nssv1454250,nssv1454256,nssv1454254,nssv1454253,nssv1454235,nssv1454232,nssv1454255,nssv1454234,nssv1454233,nssv1454248,nssv1454239,nssv1454238,nssv1454237,nssv1454242,nssv1454241,nssv1454240,nssv1454244,nssv1454247,nssv1454260,nssv1454243,nssv1454246,nssv1454245,nssv1454259,nssv1454258 M 95 0 29 "" nsv509718 19 3627945 3795681 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623748 S 4 1 0 "" NA18994 nsv833715 19 3737756 3928142 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454262,nssv1454261 M 95 0 2 "" nsv138020 19 3817387 3817447 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv156598 M 24 "" nsv2392 19 3929492 3954200 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4338,nssv1430 M 9 2 0 "" NA12878,NA19240 nsv519665 19 3958080 3991305 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696980 S 2026 0 1 "" nsv2393 19 4068490 4100563 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10172 S 9 1 0 "" NA18956 nsv833716 19 4072257 4225851 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454266,nssv1454263,nssv1454267,nssv1454265,nssv1454264 M 95 0 5 "" nsv833717 19 4155754 4319516 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454268 S 95 0 1 "" esv32625 19 4170533 4175602 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv94501,essv96435 M 51 2 0 "" 21932,22261 nsv833718 19 4172574 4431245 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454269,nssv1454270 M 95 0 2 "" nsv458328 19 4271218 4337352 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535278 S 1557 1 0 "" NINDS_194 nsv833719 19 4276242 4329049 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454271,nssv1454276,nssv1454274,nssv1454275,nssv1454273,nssv1454272 M 95 0 6 "" nsv833720 19 4318718 4491568 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454277 S 95 0 1 "" nsv137949 19 4460338 4461377 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv156527 M 24 "" nsv138483 19 4464038 4464235 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv157061 M 24 "" nsv2394 19 4498434 4543435 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7425 S 9 0 1 "" NA12156 nsv526746 19 4558587 4598231 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703090 S 2026 0 1 "" nsv833721 19 4599141 4719653 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454278 S 95 0 1 "" nsv523986 19 4732910 4735553 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699842 S 2026 1 0 "" nsv522005 19 4798713 4819802 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694775 S 2026 0 1 "" nsv516323 19 4802850 4807694 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv667572,nssv698228,nssv676422 M 2026 0 3 "" nsv528462 19 4803337 4829608 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705064 S 2026 0 1 "" nsv517448 19 4826708 4829608 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv652047,nssv688575,nssv667525,nssv701000,nssv678143,nssv652800,nssv663984,nssv687867,nssv677896,nssv667709 M 2026 0 10 "" nsv518075 19 4884228 4896974 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694198 S 2026 0 1 "" nsv833722 19 4960407 5144570 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454279 S 95 0 1 "" nsv525126 19 5006196 5010360 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701194 S 2026 0 1 "" nsv833723 19 5057828 5224466 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454280 S 95 0 1 "" nsv510750 19 5072827 5197215 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622740 S 4 0 1 "" NA18994 nsv521544 19 5129324 5153825 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698160 S 2026 0 1 "" nsv833724 19 5164519 5350029 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454281,nssv1454282 M 95 0 2 "" nsv510751 19 5307433 5438605 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622741 S 4 0 1 "" NA18994 nsv833726 19 5350030 5502334 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454283 S 95 0 1 "" nsv516923 19 5406263 5407930 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702892,nssv672662,nssv658229,nssv655000,nssv675765,nssv691873 M 2026 0 6 "" nsv471733 19 5460785 5463225 CNV Loss Hinds et al 2006 16327809 Oligo_aCGH,PCR Custom Perlegen arrays nssv646014 M 1.250 95 "" nsv442758 19 5461239 5464062 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv2395 19 5564173 5595273 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10173 S 9 1 0 "" NA18956 nsv516021 19 5645630 5655353 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv665767,nssv681997 M 2026 0 2 "" nsv521656 19 5655353 5662217 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698274 S 2026 0 1 "" nsv525707 19 5694824 5751273 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701869 S 2026 0 1 "" nsv817812 19 5736113 5751273 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417278 S 112 0 1 "" NA18608 nsv482210 19 5816838 5821551 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558571 S 1 1 0 "" KB1 nsv2396 19 6183834 6201641 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7426 S 9 1 0 "" NA12156 nsv2397 19 6252390 6285220 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5720 S 9 1 0 "" NA19129 nsv2399 19 6256705 6301357 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7427 S 9 0 1 "" NA12156 nsv833727 19 6351112 6519252 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454284 S 95 0 1 "" nsv138141 19 6362585 6362585 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv156719 M 24 "" nsv833728 19 6450800 6626432 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454286,nssv1454285,nssv1454288,nssv1454287 M 95 0 4 "" nsv138022 19 6484721 6484721 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv156600 M 24 "" esv33172 19 6644142 6645818 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv96973 S 51 1 0 "" 21817 dgv14e196 19 6661065 6937831 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array esv2422507,esv2422461,esv2422286 M 181 3 0 "" ND01205,ND01570,ND03660 nsv519827 19 6681855 6718743 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697072 S 2026 0 1 "" nsv519561 19 6696105 6725069 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv691061,nssv672591,nssv656886,nssv691521,nssv692917,nssv688524,nssv690240 M 2026 0 7 "" dgv136e55 19 6771951 7063270 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv2751807,esv2751808 M 771 2 0 "" BEC_817,SPC_87 nsv529046 19 6773219 6783880 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705762 S 2026 0 1 "" nsv833729 19 6783400 6928162 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454292,nssv1454291,nssv1454290,nssv1454289 M 95 0 4 "" nsv510752 19 6802086 6867793 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620113 S 4 0 1 "" NA15510 nsv442451 19 6805266 6833431 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv392n27 19 6846866 6951401 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv458333,nsv458344 M 1557 2 0 "" 1782681287_A,NINDS_66 nsv517794 19 6846866 7056136 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698763,nssv653282,nssv690326,nssv685247,nssv682554 M 2026 4 1 "" dgv393n27 19 6846866 7063593 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv458337,nsv458342,nsv458343,nsv458338 M 1557 4 0 "" 1780854184_A,HGDP00160,NINDS_231,NINDS_236 esv2751809 19 6847380 7787030 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6984574,essv6984573,essv6984572,essv6984571,essv6987626,essv6987625 M 771 1 0 "" BEC_720 esv33729 19 6849585 7060545 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv95536,essv93187 M 51 1 1 "" 21847,22170 esv2751810 19 6902567 7034629 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6981132,essv6981131 M 771 0 1 "" BEC_355 dgv394n27 19 6909134 6951401 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv458346,nsv458345 M 1557 0 2 "" HGDP01078,HGDP01147 esv2751811 19 6909134 6962766 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6982870,essv6982869,essv6989693 M 771 0 1 "" BEC_606 nsv510880 19 6981192 6991585 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618680 S 4 0 0 "" CHM nsv482211 19 7000351 7002746 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558572 S 1 1 0 "" KB1 nsv521213 19 7054542 7117109 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694424 S 2026 1 0 "" nsv458347 19 7063593 7156240 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535290 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01102 nsv521868 19 7147565 7155470 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694640 S 2026 0 1 "" nsv524177 19 7169382 7174848 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700058 S 2026 0 1 "" dgv395n27 19 7182644 7220321 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv458348,nsv458349 M 1557 2 0 "" HGDP01234,HGDP01240 nsv510753 19 7236661 7318398 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620114,nssv622742,nssv618958 M 4 0 3 "" NA10860,NA15510,NA18994 nsv442452 19 7357300 7360022 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv509719 19 7361579 7455797 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619743,nssv623749,nssv621059 M 4 3 0 "" NA10860,NA15510,NA18994 nsv2400 19 7452483 7483823 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2205 S 9 1 0 "" NA18555 nsv833730 19 7480391 7604483 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454293 S 95 0 1 "" nsv516576 19 7553709 7561810 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv673996,nssv692427,nssv669276,nssv657478 M 2026 0 4 "" nsv833731 19 7560000 7710217 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454294,nssv1454295 M 95 0 2 "" nsv833732 19 7643542 7842215 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454296 S 95 1 0 "" nsv833733 19 7770115 7966138 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454297 S 95 1 0 "" nsv138066 19 7777007 7777718 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv156644 M 24 "" nsv525499 19 7800732 7827623 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701631 S 2026 0 1 "" nsv138067 19 7841786 7841854 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv156645 M 24 "" nsv137988 19 7849035 7849096 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv156566 M 24 "" nsv833734 19 7931450 8109195 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454299,nssv1454298,nssv1454301,nssv1454300 M 95 0 4 "" nsv138435 19 7932342 7932342 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv157013 M 24 "" nsv469677 19 8072714 8276904 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649607 M 265 0 2 Samples from several populations that are part of the HapMap project. "" nsv518595 19 8082640 8083620 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696042 S 2026 0 1 "" nsv526669 19 8120970 8177721 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702999 S 2026 1 0 "" nsv518135 19 8148511 8177721 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695552 S 2026 0 1 "" nsv9664 19 8179323 8181207 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27255 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19132 nsv2401 19 8229484 8291544 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10987,nssv9853,nssv10174,nssv6768,nssv9333,nssv1432,nssv4339,nssv2206,nssv5721 M 9 0 9 "" NA12156,NA12878,NA15510,NA18507,NA18517,NA18555,NA18956,NA19129,NA19240 nsv169 19 8237615 8276742 CNV Loss Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv169 S 1 0 1 "" NA15510 nsv9665 19 8242830 8272717 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27693,nssv24766 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA18564,NA18860 nsv442759 19 8256197 8271067 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv524436 19 8273158 8276921 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700366 S 2026 0 1 "" nsv458350 19 8454175 8503865 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535293 S 1557 0 1 "" 1782681247_A dgv396n27 19 8458273 8535500 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv458353,nsv458351,nsv458354 M 1557 0 3 "" 1780862300_A,1780862306_A,1780862415_A nsv137944 19 8470336 8470336 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv156522 M 24 "" nsv528946 19 8535500 8538587 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705638 S 2026 0 1 "" nsv469747 19 8621093 8774315 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649768 M 265 52 1 Samples from several populations that are part of the HapMap project. "" nsv471705 19 8621094 8774315 CNV Gain+Loss Sharp et al 2005 15918152 BAC_aCGH,FISH Eichler Segmental Duplication BAC array nssv550354,nssv550355,nssv550346,nssv550363,nssv550362,nssv550351,nssv550360,nssv550361,nssv550349,nssv550365,nssv550345,nssv550344,nssv550358,nssv550367,nssv550347,nssv550366,nssv550357,nssv550350,nssv550359,nssv550356,nssv550348,nssv550352,nssv550353,nssv550364 M 48 22 2 "" JK1061,NA10469,NA10470,NA10471,NA10472,NA10493,NA10969,NA10970,NA10971,NA11323,NA11521,NA11523,NA15725,NA15726,NA15727,NA15728,NA15730,NA15732,NA16688,NA16689,NA17020,NA17052,NA17058,NA17059 nsv137974 19 8626746 8626870 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv156552 M 24 "" nsv833735 19 8665783 8736725 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454310,nssv1454342,nssv1454334,nssv1454335,nssv1454337,nssv1454339,nssv1454338,nssv1454340,nssv1454304,nssv1454348,nssv1454303,nssv1454309,nssv1454343,nssv1454302,nssv1454347,nssv1454344,nssv1454308,nssv1454346,nssv1454305,nssv1454336,nssv1454307,nssv1454306,nssv1454345,nssv1454311,nssv1454349,nssv1454314,nssv1454316,nssv1454321,nssv1454313,nssv1454312,nssv1454315,nssv1454320,nssv1454319,nssv1454333,nssv1454318,nssv1454317,nssv1454332,nssv1454322,nssv1454355,nssv1454325,nssv1454352,nssv1454324,nssv1454350,nssv1454323,nssv1454351,nssv1454354,nssv1454326,nssv1454353,nssv1454330,nssv1454327,nssv1454328,nssv1454341,nssv1454329,nssv1454331 M 95 52 2 "" nsv469648 19 8669454 8825625 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649575 M 265 79 16 Samples from several populations that are part of the HapMap project. "" nsv833737 19 8681094 8714315 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454396,nssv1454365,nssv1454391,nssv1454371,nssv1454361,nssv1454388,nssv1454359,nssv1454357,nssv1454386,nssv1454387,nssv1454378,nssv1454410,nssv1454364,nssv1454393,nssv1454362,nssv1454363,nssv1454390,nssv1454389,nssv1454395,nssv1454369,nssv1454366,nssv1454368,nssv1454367,nssv1454370,nssv1454392,nssv1454397,nssv1454409,nssv1454400,nssv1454373,nssv1454399,nssv1454358,nssv1454398,nssv1454372,nssv1454403,nssv1454401,nssv1454376,nssv1454408,nssv1454402,nssv1454404,nssv1454375,nssv1454407,nssv1454374,nssv1454377,nssv1454406,nssv1454405,nssv1454411,nssv1454414,nssv1454385,nssv1454379,nssv1454413,nssv1454360,nssv1454412,nssv1454356,nssv1454383,nssv1454415,nssv1454384,nssv1454382,nssv1454394,nssv1454380,nssv1454381 M 95 58 2 "" nsv2402 19 8684242 8796961 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10989,nssv1433,nssv5722,nssv2207,nssv2208,nssv6769 M 9 0 5 "" NA12156,NA15510,NA18555,NA19129,NA19240 nsv9666 19 8703659 8706686 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21485,nssv21580 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA10847,NA12802 nsv9667 19 8704912 8765759 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25223,nssv25294,nssv24082,nssv24791,nssv24910,nssv24549,nssv24144,nssv27265,nssv21610,nssv25231,nssv27450,nssv24660,nssv26009,nssv24473,nssv26462,nssv28453,nssv21515,nssv24499,nssv25248,nssv26737,nssv25267,nssv22159,nssv24816,nssv23612,nssv21941,nssv24093 M 31 14 9 Samples from several populations that are part of the HapMap project. "" NA07048,NA10839,NA10847,NA10863,NA11830,NA12155,NA12740,NA12802,NA12872,NA18504,NA18537,NA18552,NA18563,NA18564,NA18572,NA18853,NA18942,NA18972,NA18975,NA18980,NA19132,NA19144,NA19221 nsv2403 19 8706164 8727439 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10988,nssv6771 M 9 2 0 "" NA12156,NA15510 nsv170 19 8719093 8725990 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv170 S 1 1 0 "" NA15510 nsv171 19 8721564 8796961 CNV Loss Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv171 S 1 0 1 "" NA15510 nsv138331 19 8724851 8732344 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv156909 M 24 "" nsv2404 19 8733580 8741789 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5723 S 9 1 0 "" NA19129 nsv137985 19 8733767 8740067 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv156563 M 24 "" nsv2405 19 8741869 8744192 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4341 S 9 1 0 "" NA12878 nsv833738 19 8743028 8784826 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454425,nssv1454427,nssv1454423,nssv1454422,nssv1454434,nssv1454433,nssv1454431,nssv1454429,nssv1454432,nssv1454428,nssv1454436,nssv1454435,nssv1454437,nssv1454430,nssv1454439,nssv1454424,nssv1454440,nssv1454443,nssv1454442,nssv1454441,nssv1454426,nssv1454421,nssv1454438,nssv1454416,nssv1454420,nssv1454417,nssv1454418,nssv1454419 M 95 28 0 "" nsv833739 19 8743145 8784792 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454456,nssv1454459,nssv1454466,nssv1454457,nssv1454465,nssv1454461,nssv1454464,nssv1454463,nssv1454462,nssv1454477,nssv1454468,nssv1454467,nssv1454471,nssv1454470,nssv1454469,nssv1454489,nssv1454473,nssv1454475,nssv1454474,nssv1454478,nssv1454481,nssv1454486,nssv1454479,nssv1454482,nssv1454483,nssv1454484,nssv1454488,nssv1454487,nssv1454446,nssv1454445,nssv1454444,nssv1454476,nssv1454460,nssv1454472,nssv1454458,nssv1454449,nssv1454447,nssv1454448,nssv1454480,nssv1454455,nssv1454451,nssv1454485,nssv1454450,nssv1454454,nssv1454453,nssv1454452 M 95 45 1 "" nsv138062 19 8745302 8750615 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv156640 M 24 "" esv33984 19 8750627 8761175 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97788,essv100562 M 51 1 1 "" 22278,22298 dgv48n68 19 8751188 8836490 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH nsv833740,nsv833741 M 95 34 0 "" dgv1056e1 19 8758670 8832847 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv14388,essv11886,essv18210,essv8836,essv1839,essv1501,essv20787,essv7422,essv3468,essv806,essv21849,essv12373,essv10242,essv6645,essv4403,essv293,essv16987,essv20261,essv3183,essv13723,essv4206,essv14522,essv18441,essv14643,essv15243,essv6628,essv12575,essv7360,essv6813,essv7572,essv8312,essv7228,essv5052,essv12822,essv15399,essv20356,essv13609,essv4503,essv8776,essv15852,essv15103,essv12168,essv10086,essv5825,essv14745,essv21347,essv4176,essv4738,essv21264,essv23844,essv18937,essv16877,essv5517,essv18417,essv14330,essv16648,essv24665,essv9594,essv2991,essv21171,essv19761,essv2778,essv11651,essv6216,essv5733,essv20006,essv15759,essv20919,essv4972,esv364,essv9066,essv5141,essv8166,essv23470,essv21711,essv9374,essv24488,essv16346,essv23064,essv5441,essv19228,essv24089,essv19970,essv8357,essv4249,essv23953,essv24558,essv12451,essv14101,essv21114,essv25013,essv19088,essv19536,essv23807,essv6367,essv6171,essv23557,essv9674,essv21524,essv44,essv12762,essv7271,essv6959,essv3784,essv22401,essv5133,essv24127,essv3704,essv260,essv18585,essv24935,essv18746,essv20646,essv22782,essv12612,essv5248,essv23592,essv14202,essv1137,essv3537,essv20169,essv164,essv7106,essv22940,essv3125,essv22221,essv3972,essv10284,essv342 M 271 0 0 "" NA06993,NA06994,NA07019,NA07022,NA07034,NA07048,NA07055,NA07357,NA10835,NA10838,NA10839,NA10847,NA10855,NA10859,NA11829,NA11830,NA11831,NA11832,NA11839,NA11992,NA12005,NA12006,NA12044,NA12057,NA12144,NA12146,NA12234,NA12236,NA12248,NA12249,NA12763,NA12801,NA12802,NA12812,NA12813,NA12814,NA12815,NA12864,NA12873,NA12874,NA12875,NA12878,NA12892,NA18500,NA18506,NA18507,NA18508,NA18526,NA18529,NA18532,NA18537,NA18545,NA18547,NA18552,NA18555,NA18564,NA18566,NA18570,NA18573,NA18576,NA18577,NA18579,NA18582,NA18592,NA18593,NA18603,NA18608,NA18609,NA18620,NA18621,NA18623,NA18624,NA18632,NA18636,NA18637,NA18853,NA18858,NA18861,NA18913,NA18914,NA18943,NA18947,NA18948,NA18964,NA18965,NA18968,NA18969,NA18970,NA18971,NA18973,NA18976,NA18978,NA18980,NA18981,NA18987,NA18991,NA18992,NA19012,NA19092,NA19093,NA19094,NA19098,NA19101,NA19103,NA19119,NA19120,NA19127,NA19129,NA19130,NA19131,NA19132,NA19140,NA19141,NA19142,NA19144,NA19152,NA19154,NA19159,NA19193,NA19194,NA19202,NA19203,NA19205,NA19206,NA19207,NA19221,NA19223,NA19238 nsv2406 19 8854953 8864763 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5724 S 9 1 0 "" NA19129 nsv2407 19 8875808 8909190 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4342 S 9 1 0 "" NA12878 nsv523652 19 8901732 8957252 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699453 S 2026 0 1 "" dgv198n21 19 8957252 8962672 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv522984,nsv526942 M 2026 2 0 "" nsv138341 19 9026451 9026451 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv156919 M 24 "" nsv509720 19 9044436 9160487 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623750 S 4 1 0 "" NA18994 nsv138381 19 9049042 9049042 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv156959 M 24 "" nsv138506 19 9083945 9086121 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv157084 M 24 "" nsv2408 19 9113723 9126325 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2209 S 9 0 1 "" NA18555 nsv2411 19 9128749 9174321 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2210,nssv1434 M 9 0 2 "" NA18555,NA19240 nsv138312 19 9129373 9136643 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv156890 M 24 "" nsv442760 19 9135672 9139121 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv516657 19 9152190 9178125 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv669934,nssv680084,nssv672494,nssv696737 M 2026 4 0 "" nsv523472 19 9152190 9312577 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699231 S 2026 0 1 "" esv33639 19 9253140 9253284 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101323 S 51 0 1 "" 21805 nsv521091 19 9262159 9311029 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv681893,nssv689798,nssv694451 M 2026 0 3 "" nsv2412 19 9357001 9401267 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2211 S 9 0 1 "" NA18555 nsv138179 19 9576769 9586516 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv156757 M 24 "" nsv518826 19 9671038 9729404 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696279 S 2026 0 1 "" nsv2413 19 9715828 9742451 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5726 S 9 0 1 "" NA19129 nsv520683 19 9779229 9940093 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697555 S 2026 0 1 "" esv33490 19 9812812 9812929 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv94697,essv97421,essv97175,essv93408 M 51 0 4 "" 21791,21879,22075,22170 nsv833742 19 9843879 9992977 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454527,nssv1454524,nssv1454525,nssv1454526 M 95 0 4 "" nsv515879 19 9996284 9996711 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv678274,nssv679779,nssv661147,nssv655936,nssv665393,nssv672351,nssv665123,nssv691454,nssv689973,nssv669557,nssv686765,nssv665587,nssv683077,nssv655117,nssv668312 M 2026 15 0 "" nsv527207 19 9996284 9998663 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703607 S 2026 1 0 "" nsv458355 19 10033516 10074154 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535298 S 1557 0 1 "" NINDS_165 nsv2414 19 10035445 10069078 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4343 S 9 1 0 "" NA12878 nsv833743 19 10049325 10223589 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454530,nssv1454529,nssv1454528 M 95 0 3 "" nsv518008 19 10310358 10398268 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694190 S 2026 1 0 "" nsv2415 19 10312307 10344873 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6772 S 9 1 0 "" NA12156 nsv521918 19 10398268 10403610 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694110 S 2026 1 0 "" nsv833744 19 10430640 10606709 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454531 S 95 0 1 "" nsv833745 19 10510808 10699596 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454532 S 95 0 1 "" nsv833746 19 10650427 10814432 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454534,nssv1454533,nssv1454535 M 95 0 3 "" nsv833748 19 10728678 10897044 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454546,nssv1454544,nssv1454540,nssv1454543,nssv1454545,nssv1454542,nssv1454541,nssv1454539,nssv1454537,nssv1454538,nssv1454536 M 95 0 11 "" nsv138450 19 10732521 10736637 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv157028 M 24 "" nsv2416 19 10785899 10820583 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1435 S 9 1 0 "" NA19240 nsv833749 19 10852931 10999254 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454547 S 95 0 1 "" nsv7305 19 10941472 10978072 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1436,nssv5727 M 9 0 0 "" NA19129,NA19240 nsv833750 19 10954342 11054633 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454548,nssv1454549 M 95 0 2 "" nsv833751 19 10977815 11135901 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454550 S 95 0 1 "" nsv522449 19 11163807 11188626 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705810 S 2026 0 1 "" nsv525977 19 11165404 11219440 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702196 S 2026 0 1 "" nsv833752 19 11180000 11420754 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454551 S 95 0 1 "" nsv523678 19 11202635 11219799 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699482 S 2026 0 1 "" nsv519802 19 11208493 11550158 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697059 S 2026 0 1 "" nsv482213 19 11349475 11356019 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558574 S 1 1 0 "" KB1 nsv509721 19 11497031 11663205 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619744 S 4 1 0 "" NA10860 nsv525966 19 11638889 12096478 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702180 S 2026 1 0 "" nsv522659 19 11680193 11693283 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv706061 S 2026 0 1 "" nsv518441 19 11689410 11700595 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695878 S 2026 0 1 "" esv33306 19 11753968 11754549 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv95209,essv95532 M 51 2 0 "" 21721,21847 nsv458356 19 11781215 11875274 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535299 S 1557 1 0 "" 1780846321_A nsv482214 19 11837844 11841306 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558575 S 1 1 0 "" KB1 nsv482215 19 11896900 11922577 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558576 S 1 1 0 "" KB1 nsv2417 19 11898982 11908137 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5728 S 9 0 1 "" NA19129 nsv507887 19 11916938 11922938 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620639,nssv623256 M 4 2 0 "" NA15510,NA18994 nsv524284 19 12047761 12049266 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700183 S 2026 0 1 "" nsv833753 19 12072785 12245978 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454553,nssv1454552 M 95 0 2 "" nsv138142 19 12095688 12099487 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv156720 M 24 "" nsv510754 19 12160956 12177360 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620115 S 4 0 1 "" NA15510 dgv1057e1 19 12350726 12410655 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv19133,esv1123 M 271 0 0 "" NA12044 nsv442453 19 12377146 12407188 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv199n21 19 12377150 12393330 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv527952,nsv517868 M 2026 2 0 "" nsv817813 19 12377150 12393330 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417039 S 112 1 0 "" NA12044 nsv2418 19 12465973 12490479 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4645 S 9 0 1 "" NA19129 nsv510755 19 12488638 12579004 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618959,nssv620116 M 4 0 2 "" NA10860,NA15510 nsv2419 19 12521505 12577197 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5729,nssv1437,nssv6773,nssv4344 M 9 0 4 "" NA12156,NA12878,NA19129,NA19240 nsv138389 19 12621314 12622177 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv156967 M 24 "" nsv2420 19 12800001 12835472 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4345,nssv5730 M 9 2 0 "" NA12878,NA19129 nsv833754 19 12848022 13000000 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454554 S 95 0 1 "" nsv2422 19 12972176 13004525 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10175 S 9 1 0 "" NA18956 nsv525967 19 13184759 13596342 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702181 S 2026 1 0 "" nsv138156 19 13193041 13193041 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv156734 M 24 "" nsv138168 19 13212503 13212563 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv156746 M 24 "" nsv510468 19 13235042 13241042 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624200,nssv618444 M 4 0 2 "" CHM,NA18994 nsv833755 19 13258013 13465847 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454555 S 95 1 0 "" nsv523990 19 13292565 13302743 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699846 S 2026 0 1 "" nsv520548 19 13296829 13300130 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv682599,nssv672550,nssv672418 M 2026 0 3 "" nsv833756 19 13553567 13735165 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454556 S 95 0 1 "" nsv833757 19 13697718 13923800 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454558,nssv1454560,nssv1454559,nssv1454557 M 95 0 4 "" nsv833760 19 13844286 13899886 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454561 S 95 0 1 "" nsv833761 19 13970471 14108590 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454563,nssv1454562,nssv1454564 M 95 0 3 "" dgv49n68 19 14038314 14245943 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH nsv833762,nsv833763 M 95 0 3 "" nsv517436 19 14107429 14159442 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv683127,nssv669114,nssv652016,nssv667027,nssv678216,nssv686292,nssv689705 M 2026 0 7 "" nsv2423 19 14123914 14156934 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4346 S 9 1 0 "" NA12878 nsv833764 19 14353599 14475873 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454568,nssv1454570,nssv1454571,nssv1454569 M 95 0 4 "" nsv817814 19 14441113 14451612 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417504 S 112 0 1 "" NA18968 nsv527867 19 14441328 14475242 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704366 S 2026 0 1 "" nsv138351 19 14494320 14496657 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv156929 M 24 "" nsv458357 19 14667162 14707335 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535300 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00029 nsv509722 19 14722607 14774812 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621060 S 4 1 0 "" NA15510 nsv442454 19 14776641 14783883 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv517123 19 14777571 14780710 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv653822,nssv679587,nssv666784,nssv692122,nssv677090,nssv658069,nssv661713,nssv679045 M 2026 0 8 "" nsv520716 19 14844544 14850048 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv674680,nssv675698 M 2026 2 0 "" nsv510756 19 14898268 14923955 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617435,nssv622743 M 4 0 2 "" CHM,NA18994 nsv2424 19 14906620 14950627 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4347 S 9 0 1 "" NA12878 dgv1058e1 19 14957950 15120179 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv24273,esv365 M 271 0 0 "" NA10856 nsv527295 19 14974675 14974778 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703710 S 2026 0 1 "" nsv138379 19 14981078 14981078 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv156957 M 24 "" nsv518179 19 14994926 14996741 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695599 S 2026 0 1 "" nsv523277 19 14994926 14998243 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699011 S 2026 0 1 "" nsv525115 19 15053988 15061165 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701179 S 2026 0 1 "" nsv9668 19 15073611 15103322 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28454,nssv27438 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA18502,NA19221 nsv521424 19 15131805 15132771 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694445 S 2026 0 1 "" nsv833765 19 15264050 15447364 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454572 S 95 0 1 "" nsv482216 19 15423438 15436382 CNV Loss Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558577 S 1 0 1 "" KB1 nsv817815 19 15526528 15529140 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418225,nssv1418224,nssv1418227 M 112 0 3 "" NA19143,NA19144,NA19145 nsv515771 19 15527533 15529140 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv690401,nssv664731 M 2026 0 2 "" nsv9670 19 15621314 15637760 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21640 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA12802 nsv516707 19 15634915 15696522 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv684241,nssv660894,nssv681375,nssv680265,nssv665442,nssv656672,nssv698418,nssv657613,nssv652997,nssv668549,nssv690678,nssv675022,nssv673967,nssv652599,nssv681505,nssv689506,nssv659013,nssv678006 M 2026 18 0 "" nsv9671 19 15638296 15694832 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25627,nssv25604,nssv27701 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA18860,NA19173 dgv137e55 19 15638409 15700459 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv35069,esv34923,esv34230,esv34310,esv34334,esv34422,esv34445,esv34718 M 771 8 0 "" NA18505,NA18515,NA18523,NA18854,NA18859,NA18860,NA19171,NA19173 dgv397n27 19 15641017 15652606 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv458358,nsv458359 M 1557 2 0 "" HGDP00458,HGDP00473 nsv458360 19 15641017 15672717 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535303 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00471 dgv28n64 19 15641017 15691468 CNV Gain Wang_et_al_2007 17921354 SNP_array nsv817816,nsv817818 M 112 9 0 "" NA18515,NA18516,NA18852,NA18854,NA19116,NA19137,NA19139,NA19171,NA19173 dgv398n27 19 15641017 15696522 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv458362,nsv458367,nsv458365,nsv458364,nsv458370,nsv458368,nsv458366,nsv458369,nsv458361,nsv458371 M 1557 10 0 "" HGDP00450,HGDP00459,HGDP00467,HGDP00470,HGDP00479,HGDP00924,HGDP00936,HGDP00940,HGDP00942,HGDP01414 dgv1059e1 19 15641041 15712261 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv10195,essv15937,essv8517,essv12112,essv9265,essv9298,esv1306,essv8496,essv13115,essv16591,essv8909,essv12142 M 271 0 0 "" NA18505,NA18515,NA18516,NA18523,NA18852,NA18854,NA18859,NA18860,NA19137,NA19171,NA19173 nsv442455 19 15641343 15652621 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv1060e1 19 15641593 15686739 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv8967,essv12027,essv10716,essv16185 M 271 0 0 "" NA18506,NA18508,NA19116,NA19139 nsv526168 19 15641747 15720712 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702429 S 2026 1 0 "" nsv442761 19 15661348 15685067 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv833766 19 15730905 15928714 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454573 S 95 0 1 "" nsv2425 19 15736235 15766462 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2992 S 9 1 0 "" NA18555 nsv138369 19 15772887 15773185 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv156947 M 24 "" nsv522331 19 15946596 15950925 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695111 S 2026 0 1 "" nsv520592 19 15950925 15966270 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv687293,nssv672922,nssv686051,nssv687959,nssv678217,nssv695676,nssv679642 M 2026 0 7 "" dgv200n21 19 15987795 16011779 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv524067,nsv517514 M 2026 0 18 "" nsv458372 19 16005586 16033739 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535315 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01169 nsv137994 19 16037883 16039993 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv156572 M 24 "" nsv833767 19 16093201 16319571 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454574 S 95 0 1 "" nsv517667 19 16230410 16253163 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv658672,nssv676743,nssv657318,nssv692707,nssv684571,nssv652768,nssv689938,nssv682449,nssv654954,nssv655732,nssv653025,nssv673182,nssv677576,nssv679280 M 2026 0 14 "" nsv507888 19 16275835 16281835 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619214 S 4 1 0 "" NA10860 nsv510757 19 16531732 16604120 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622744 S 4 0 1 "" NA18994 nsv2426 19 16967705 16986457 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1438 S 9 1 0 "" NA19240 nsv519740 19 16973827 16974147 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv660470,nssv658049,nssv699664 M 2026 1 2 "" esv32733 19 16998070 16999171 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97555 S 51 1 0 "" 21616 nsv2427 19 17069627 17104026 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1439 S 9 1 0 "" NA19240 nsv458373 19 17155296 17198344 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535316 S 1557 0 1 "" 1780854288_A nsv515965 19 17245267 17281289 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv679225,nssv658228,nssv676858,nssv672661,nssv662342,nssv665495,nssv673562,nssv675433,nssv662122,nssv677944,nssv688468,nssv659424,nssv703068,nssv702549 M 2026 0 14 "" nsv833768 19 17310649 17498547 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454575 S 95 0 1 "" esv2422429 19 17501677 17550862 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161469 S 181 1 0 "" ND05370 nsv138503 19 17548813 17548813 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv157081 M 24 "" nsv138197 19 17609483 17609746 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv156775 M 24 "" nsv138145 19 17637787 17637844 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv156723 M 24 "" dgv50n68 19 17643691 17814732 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH nsv833771,nsv833769 M 95 0 4 "" nsv833772 19 17826173 18000337 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454581,nssv1454580 M 95 1 1 "" nsv2428 19 17966839 18000567 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7428 S 9 1 0 "" NA12156 nsv833773 19 18013971 18163988 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454583,nssv1454582 M 95 0 2 "" nsv833774 19 18074761 18156329 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454590,nssv1454584,nssv1454585,nssv1454589,nssv1454586,nssv1454588,nssv1454587,nssv1454592,nssv1454591,nssv1454593 M 95 0 10 "" nsv833775 19 18074761 18251074 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454607,nssv1454606,nssv1454605,nssv1454602,nssv1454608,nssv1454609,nssv1454603,nssv1454604,nssv1454601,nssv1454596,nssv1454600,nssv1454595,nssv1454594,nssv1454597,nssv1454599,nssv1454598 M 95 0 16 "" nsv2429 19 18095179 18140381 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7429 S 9 0 1 "" NA12156 nsv2430 19 18357428 18375937 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7430 S 9 0 1 "" NA12156 nsv482217 19 18406625 18409943 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558578 S 1 1 0 "" KB1 nsv833776 19 18499028 18643264 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454610 S 95 0 1 "" nsv2431 19 18682366 18686055 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10176 S 9 1 0 "" NA18956 nsv2433 19 18693064 18735412 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5732,nssv6774 M 9 2 0 "" NA12156,NA19129 nsv833777 19 18736936 18892076 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454612,nssv1454611 M 95 0 2 "" nsv2434 19 18767640 18799921 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10177 S 9 1 0 "" NA18956 nsv817819 19 18870470 18883204 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417279 S 112 0 1 "" NA18608 nsv833778 19 18873669 19062487 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454613,nssv1454614 M 95 0 2 "" nsv2435 19 18938432 18983579 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7431 S 9 0 1 "" NA12156 nsv833779 19 19024492 19174091 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454616,nssv1454615 M 95 0 2 "" nsv509723 19 19489356 19567370 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621061 S 4 1 0 "" NA15510 nsv518076 19 19553579 19576794 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695489 S 2026 0 1 "" nsv509725 19 19581803 19637160 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623751 S 4 1 0 "" NA18994 nsv519533 19 19650528 19692544 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696905 S 2026 1 0 "" nsv2436 19 19676858 19730171 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2212,nssv6775,nssv5733 M 9 0 3 "" NA12156,NA18555,NA19129 esv33937 19 19687866 19692655 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97220,essv100132 M 51 0 2 "" 22075,22286 nsv509726 19 19692717 19759564 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623752,nssv621062 M 4 2 0 "" NA15510,NA18994 esv33361 19 19699073 19700649 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101543,essv101106,essv100938,essv95158,essv101416,essv94408,essv97014,essv95564,essv95267,essv97411,essv101653,essv95776,essv92755,essv96656,essv96015,essv93481,essv93397,essv95016,essv92618,essv96443,essv99185,essv97758,essv100506,essv100424,essv98397 M 51 0 25 "" 21603,21618,21693,21721,21805,21808,21817,21841,21872,21879,21909,21911,21944,22011,22127,22128,22170,22231,22233,22261,22275,22278,22298,22300,22352 nsv517362 19 19707458 19733093 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv685371,nssv693634,nssv654696,nssv651818 M 2026 0 4 "" nsv458375 19 19724014 19810209 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535318 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00776 nsv519535 19 19732250 20422200 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696906 S 2026 1 0 "" nsv138332 19 19857076 19857218 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv156910 M 24 "" nsv458376 19 19882046 20012257 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535319 S 1557 1 0 "" 1780854017_A nsv9672 19 20023638 20024700 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28455 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19221 dgv1061e1 19 20028401 20290544 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv716,essv22359 M 271 0 0 "" NA12875 esv34357 19 20070600 20178000 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6979076,essv6986791 M 771 1 0 "" NA12875 nsv817820 19 20072540 20162645 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415794 S 112 1 0 "" NA12875 essv24619 19 20079226 20152327 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12875 nsv520325 19 20108927 20153859 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697349 S 2026 1 0 "" nsv9673 19 20173172 20180764 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27305 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19132 esv32533 19 20174267 20176988 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101378 S 51 0 1 "" 21805 esv2422327 19 20212706 20384170 CNV Deletion Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161237 S 181 0 1 "" ND03403 nsv833780 19 20283011 20453165 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454617 S 95 1 0 "" nsv523471 19 20296660 20589484 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699230 S 2026 0 1 "" dgv1062e1 19 20321226 20566187 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv9863,essv632,essv12048,essv8547,essv4224,essv6059,essv13284 M 271 0 0 "" NA18503,NA18603,NA18998,NA19116,NA19144,NA19201 dgv1063e1 19 20321226 20637787 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv59,essv17194,esv648 M 271 0 0 "" NA18991,NA19171 nsv817821 19 20323995 20368239 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417946 S 112 1 0 "" NA18852 nsv458377 19 20323995 21503042 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535320 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00598 dgv399n27 19 20350861 20522325 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv458405,nsv458401,nsv458392,nsv458410,nsv458404,nsv458378,nsv458408,nsv458409,nsv458393,nsv458403,nsv458406,nsv458411,nsv458402 M 1557 0 13 "" 1780854197_A,1780854489_A,1798860587_A,HGDP00241,HGDP00458,HGDP00643,HGDP00647,HGDP00649,HGDP00682,HGDP00722,HGDP00766,HGDP01297,HGDP01396 dgv400n27 19 20360525 20473895 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv458395,nsv458382,nsv458394,nsv458383,nsv458399,nsv458400,nsv458397,nsv458398 M 1557 0 8 "" 1780854101_A,1780854261_A,1780854517_A,1780854574_A,HGDP00035,HGDP00623,NINDS_142,NINDS_45 dgv401n27 19 20360525 20585008 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv458384,nsv458412 M 1557 0 2 "" HGDP00205,HGDP01237 nsv2437 19 20362702 20521721 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4348,nssv2213 M 9 0 2 "" NA12878,NA18555 nsv9674 19 20365974 20368758 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27314 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19132 nsv517263 19 20368239 20562663 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv658454,nssv686275,nssv669243,nssv662859,nssv669430,nssv662322,nssv682400,nssv684400,nssv688242,nssv672828,nssv668248,nssv664948,nssv685162,nssv665390,nssv678909,nssv680211,nssv682379,nssv679426,nssv664032,nssv669643,nssv680347,nssv656249,nssv673708,nssv687908,nssv672313,nssv669341,nssv684674,nssv677302,nssv659014,nssv659576,nssv688683,nssv663360,nssv674341,nssv681831,nssv677769,nssv678571,nssv677490,nssv680292,nssv665317,nssv684801,nssv672589,nssv663172,nssv688158,nssv688484,nssv677091,nssv680145,nssv658252,nssv660650,nssv654005,nssv691501,nssv666476,nssv689309,nssv653115,nssv657587,nssv652999,nssv686021,nssv673900,nssv686838,nssv653461,nssv655880,nssv672350,nssv683019,nssv666393,nssv659397,nssv684691,nssv682751,nssv693877,nssv673221,nssv664823,nssv660228,nssv664850,nssv655858,nssv684597,nssv683520,nssv665705,nssv685420,nssv651883,nssv688574,nssv686203,nssv668351,nssv673948,nssv685710,nssv687885,nssv663301,nssv652175,nssv678941,nssv667974,nssv655905,nssv680067,nssv663756,nssv665766,nssv663701,nssv693434,nssv682046,nssv689263,nssv677577,nssv675963,nssv673278,nssv688083,nssv656491,nssv686899,nssv692425,nssv656436,nssv681625,nssv659195,nssv659609,nssv665170,nssv669051,nssv670476,nssv686713,nssv660124,nssv661408,nssv685096,nssv669831,nssv688280,nssv667150,nssv664406,nssv653764,nssv668550,nssv683760,nssv667620,nssv690071,nssv688449,nssv670817,nssv654844,nssv678218,nssv682293,nssv673588,nssv671809,nssv688222,nssv685640,nssv681996,nssv682730,nssv687812,nssv669750,nssv690155,nssv680430,nssv690603,nssv673085,nssv674438,nssv674535,nssv675057,nssv655035,nssv652363,nssv690954,nssv689379,nssv662145,nssv669800,nssv667004,nssv686871,nssv652868,nssv662000,nssv653305,nssv673205,nssv678846,nssv687326,nssv672986,nssv694257,nssv690850,nssv665560,nssv690308,nssv688123,nssv673239,nssv661040,nssv660248,nssv690448,nssv693983,nssv688047,nssv652690,nssv654321,nssv654132,nssv682927,nssv671776,nssv668229,nssv676713,nssv655607,nssv664456,nssv659368,nssv689939,nssv664897,nssv668311,nssv668941,nssv679499,nssv656971,nssv665268,nssv655841,nssv657953,nssv683947,nssv693100,nssv671348,nssv677673,nssv670364,nssv693310,nssv679798,nssv664778,nssv685245,nssv684476,nssv685908,nssv676959,nssv664183,nssv671320,nssv690041,nssv683592,nssv671293,nssv693336,nssv660353,nssv701444,nssv659777,nssv675259,nssv666343,nssv669966,nssv661929,nssv661839,nssv667250,nssv688910,nssv668406,nssv652715,nssv666456,nssv702338,nssv690128,nssv686419,nssv693935,nssv686912,nssv665333,nssv657076,nssv681080,nssv689538,nssv679046 M 2026 1 227 "" nsv510758 19 20373933 20395826 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620117 S 4 0 1 "" NA15510 dgv54n17 19 20376443 20510677 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437181,nsv437179 M 60 0 2 "" NA12802,NA12878 nsv510469 19 20376769 20382769 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618445,nssv624201 M 4 0 2 "" CHM,NA18994 esv33627 19 20383239 20425030 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97054 S 51 0 1 "" 21817 esv33886 19 20384800 20510816 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101512,essv96750,essv100991,essv94066,essv97074,essv101718,essv98956 M 51 3 4 "" 21603,21659,21693,21802,21817,21909,21938 nsv9675 19 20387407 20510731 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24935,nssv26748,nssv24872,nssv21670,nssv24960,nssv28456,nssv27458,nssv26029,nssv25650,nssv27365 M 31 0 9 Samples from several populations that are part of the HapMap project. "" NA10839,NA12802,NA18504,NA18517,NA18972,NA19007,NA19144,NA19173,NA19221 nsv442762 19 20388046 20513077 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv17n14 19 20404485 20514068 CNV Loss Cooper et al 2008 18776910 SNP_array nsv433317,nsv433315 M 9 0 2 "" NA18517,NA18555 nsv433316 19 20413668 20473895 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463197 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA12878 nsv507889 19 20418948 20424948 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619215,nssv623257 M 4 2 0 "" NA10860,NA18994 nsv458413 19 20422200 20439390 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535347 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00195 nsv458414 19 20422200 20473895 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535348 S 1557 0 1 "" 1798860280_A nsv817822 19 20422200 20473895 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417466,nssv1416272,nssv1416508,nssv1416610,nssv1416280,nssv1417728,nssv1416609,nssv1416200,nssv1417485,nssv1417330,nssv1416201,nssv1418228,nssv1417568,nssv1417679,nssv1418229,nssv1417215,nssv1417170,nssv1417141 M 112 0 18 "" NA12057,NA12878,NA12891,NA18517,NA18542,NA18550,NA18576,NA18609,NA18960,NA18965,NA18972,NA18999,NA19003,NA19140,NA19144,NA19145,NA19171,NA19173 dgv402n27 19 20422200 20528316 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv458488,nsv458435,nsv458487,nsv458454,nsv458465,nsv458476,nsv458447,nsv458475,nsv458473,nsv458451,nsv458453,nsv458420,nsv458502,nsv458428,nsv458471,nsv458464,nsv458503,nsv458456,nsv458430,nsv458417,nsv458472,nsv458432,nsv458468,nsv458482,nsv458433,nsv458458,nsv458415,nsv458422,nsv458450,nsv458470,nsv458481,nsv458445,nsv458469,nsv458480,nsv458426,nsv458459,nsv458443,nsv458462,nsv458477,nsv458431,nsv458419,nsv458467,nsv458444,nsv458478,nsv458449,nsv458434,nsv458416,nsv458439,nsv458446,nsv458455,nsv458460,nsv458424,nsv458425,nsv458437,nsv458483,nsv458438,nsv458423,nsv458486,nsv458421,nsv458442,nsv458457,nsv458436,nsv458427,nsv458479,nsv458484,nsv458448,nsv458466,nsv458461 M 1557 0 68 "" 1780854023_A,1780854079_A,1780854096_A,1780854313_A,1782681091_A,1787431197_A,1788485381_A,HGDP00001,HGDP00052,HGDP00058,HGDP00080,HGDP00082,HGDP00096,HGDP00116,HGDP00130,HGDP00161,HGDP00173,HGDP00187,HGDP00199,HGDP00210,HGDP00258,HGDP00274,HGDP00333,HGDP00351,HGDP00417,HGDP00546,HGDP00554,HGDP00561,HGDP00587,HGDP00601,HGDP00619,HGDP00663,HGDP00700,HGDP00723,HGDP00736,HGDP00739,HGDP00745,HGDP00764,HGDP00781,HGDP00885,HGDP00931,HGDP00936,HGDP00948,HGDP00949,HGDP00963,HGDP00966,HGDP00973,HGDP01064,HGDP01069,HGDP01074,HGDP01094,HGDP01152,HGDP01172,HGDP01187,HGDP01191,HGDP01197,HGDP01212,HGDP01290,HGDP01301,HGDP01303,HGDP01305,HGDP01340,HGDP01380,HGDP01383,HGDP01400,NINDS_259,NINDS_29,NINDS_93 dgv403n27 19 20422200 20585008 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv458491,nsv458506,nsv458492,nsv458504,nsv458490,nsv458489,nsv458493 M 1557 0 7 "" 1780854538_A,1780854594_A,1780862001_A,HGDP00622,HGDP00758,HGDP01156,NINDS_156 dgv1064e1 19 20424240 20515739 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2958,essv1330,essv1653,essv3663,essv3490,essv758,essv14675,essv8899,essv5885,essv13985,essv7988,essv7254,essv20704,essv12103,essv4341,essv22018,essv6102,essv710,essv7470 M 271 0 0 "" NA12802,NA12815,NA18573,NA18576,NA18622,NA18633,NA18635,NA18940,NA18961,NA18972,NA18973,NA18991,NA18999,NA19003,NA19098,NA19145,NA19171,NA19173,NA19221 dgv1065e1 19 20424240 20551548 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2918,essv21924,essv24344,essv3911,essv17992,essv7435,essv18786,essv5857,essv2729,essv3594 M 271 0 0 "" NA10839,NA12005,NA12057,NA12891,NA18555,NA18582,NA18960,NA18965,NA18969,NA19007 nsv817823 19 20439390 20473895 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416689 S 112 0 1 "" NA19116 nsv458508 19 20449621 20455154 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535434 S 1557 0 1 "" 1780854216_A nsv458509 19 20473895 20523385 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535435 S 1557 0 1 "" NINDS_127 nsv523499 19 20473895 20582566 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699268 S 2026 1 0 "" esv2751781 19 20528668 20777265 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6985841,essv6987280,essv6985842,essv6985843 M 771 1 0 "" SPC_65 nsv9676 19 20588542 20594641 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25672,nssv24841 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA18564,NA19173 nsv510470 19 20611872 20617872 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624202,nssv618446 M 4 0 2 "" CHM,NA18994 esv2751782 19 20613342 20777300 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6983784,essv6987415 M 771 1 0 "" BEC_626 nsv458512 19 20618532 20833190 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535436 S 1557 1 0 "" 1780862577_A dgv404n27 19 20625937 20779390 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv458524,nsv458515,nsv458516,nsv458514 M 1557 4 0 "" 1780854063_A,1780862408_A,1782681317_A,NINDS_110 nsv517256 19 20625937 20779390 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv686022,nssv677612,nssv686464,nssv671810,nssv654133,nssv687665 M 2026 6 0 "" nsv507890 19 20802708 20808708 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619216,nssv623258 M 4 2 0 "" NA10860,NA18994 dgv201n21 19 20833190 20901624 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv522090,nsv515576 M 2026 0 12 "" nsv509727 19 20836977 20905163 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623753,nssv619745 M 4 2 0 "" NA10860,NA18994 nsv2438 19 20877999 20908466 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10991 S 9 1 0 "" NA15510 nsv515577 19 20944207 20956239 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv660735,nssv659534,nssv676108,nssv674832,nssv664916,nssv692609,nssv662762,nssv661904,nssv665994,nssv671710,nssv673604,nssv657277,nssv656571,nssv691907,nssv664216,nssv686106,nssv686714,nssv657319,nssv658822,nssv693936,nssv682805,nssv687174,nssv678730,nssv672923,nssv663945,nssv663126,nssv690402,nssv681391,nssv687294 M 2026 0 29 "" esv33140 19 20949267 20949451 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv94258 S 51 1 0 "" 22394 nsv817824 19 20949974 20956239 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416611 S 112 0 1 "" NA19172 nsv2439 19 20978765 21011480 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6776 S 9 1 0 "" NA12156 nsv520833 19 21105942 21106614 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694403 S 2026 0 1 "" nsv517759 19 21183684 21212722 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv673141,nssv680537,nssv692671,nssv653141,nssv661714 M 2026 0 5 "" esv2751783 19 21257662 21518177 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6989401,essv6989884,essv6983949,essv6983950 M 771 0 1 "" BEC_737 nsv507891 19 21307212 21313212 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619217,nssv617942 M 4 2 0 "" CHM,NA10860 nsv138313 19 21417637 21420273 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv156891 M 24 "" nsv138282 19 21417637 21426681 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv156860 M 24 "" esv33676 19 21428053 21428509 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv96873 S 51 0 1 "" 21659 nsv833782 19 21455377 21637562 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454618,nssv1454619,nssv1454620,nssv1454621 M 95 0 4 "" nsv510759 19 21456631 21515031 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622746 S 4 0 1 "" NA18994 nsv510923 19 21521532 21549970 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621644 S 4 0 0 "" NA15510 nsv7306 19 21587741 22072901 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10179,nssv10178 M 9 0 0 "" NA18956 nsv528643 19 21588783 21590281 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705275 S 2026 0 1 "" nsv138061 19 21610799 21620561 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv156639 M 24 "" nsv833783 19 21613246 21783678 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454622 S 95 0 1 "" nsv833784 19 21694487 21828993 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454624,nssv1454623 M 95 0 2 "" dgv1066e1 19 21777328 22982374 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv25160,essv21861 M 271 0 0 "" NA11839 esv731 19 21777328 23732307 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent + Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 "" esv34340 19 21818621 22864300 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6987328,essv6978112,essv6978111,essv6978110,essv6978109,essv6987327 M 771 0 1 "" NA11839 nsv833785 19 21873983 22055152 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454625 S 95 1 0 "" nsv469674 19 21946355 22136832 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649604 M 265 0 0 Samples from several populations that are part of the HapMap project. "" nsv520741 19 22041976 22113096 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv683948,nssv674876 M 2026 0 2 "" nsv525240 19 22042752 23008507 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701330 S 2026 1 0 "" nsv833786 19 22126684 22292691 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454626 S 95 1 0 "" nsv469671 19 22133661 22288914 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649601 M 265 0 0 Samples from several populations that are part of the HapMap project. "" nsv9677 19 22138302 22139215 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24525 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18853 nsv9678 19 22139594 22153540 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26759,nssv27446,nssv26049,nssv28457,nssv25256,nssv27374 M 31 1 5 Samples from several populations that are part of the HapMap project. "" NA18502,NA18504,NA18517,NA18980,NA19144,NA19221 nsv2440 19 22141755 22175664 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7432 S 9 1 0 "" NA12156 nsv509728 19 22198410 22198410 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621063 S 4 1 0 "" NA15510 nsv9679 19 22199151 22240276 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24551 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18853 nsv2441 19 22202771 22208037 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1440,nssv10180,nssv5734 M 9 3 0 "" NA18956,NA19129,NA19240 nsv442456 19 22216254 22218356 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv515993 19 22229909 22242762 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv665627,nssv666178,nssv703591 M 2026 3 0 "" nsv817825 19 22229909 22242762 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417947 S 112 1 0 "" NA18853 essv3682 19 22310497 22372715 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18943 dgv1067e1 19 22325357 22372453 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv3572,essv1674 M 271 0 0 "" NA18987,NA18992 nsv442457 19 22325358 22358984 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" esv2751784 19 22358984 24297500 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6988446,essv6985665,essv6981745,essv6981746,essv6981747 M 771 1 0 "" BEC_333 nsv516536 19 22402580 22414593 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv673994,nssv668973 M 2026 0 2 "" nsv138421 19 22415646 22415840 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv156999 M 24 "" nsv833787 19 22430858 22603985 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454627 S 95 1 0 "" nsv458526 19 22431189 22462840 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535442 S 1557 0 1 "" NINDS_142 nsv518685 19 22485436 22488541 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696136 S 2026 0 1 "" nsv9681 19 22500564 22507918 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26770 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18504 nsv9682 19 22559099 22561064 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26068,nssv27383 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18517,NA19144 nsv9683 19 22626147 22627934 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26087,nssv24866 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18564,NA19144 nsv9684 19 22639995 22646307 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27323 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19132 nsv9685 19 22661443 22664981 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27332 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19132 dgv138e55 19 22714389 23474937 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv34470,esv34907 M 771 2 0 "" NA19144,NA19145 nsv509729 19 22721804 22818468 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619746 S 4 1 0 "" NA10860 nsv510881 19 22721804 22818468 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621645 S 4 0 0 "" NA15510 nsv507892 19 22745015 22751015 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617943,nssv623259 M 4 2 0 "" CHM,NA18994 essv17031 19 22774966 23732307 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19144 dgv1068e1 19 22779523 23514066 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv9849,essv9943,essv14661 M 271 0 0 "" NA19144,NA19145 nsv9686 19 22781294 23445590 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25319,nssv23898,nssv24663,nssv25292,nssv27422,nssv27359,nssv27341,nssv25746,nssv24921,nssv24689,nssv28460,nssv24971,nssv27456,nssv24927,nssv24120,nssv27350,nssv23640,nssv24741,nssv24661,nssv27470,nssv21971,nssv24952,nssv24196,nssv25010,nssv24637,nssv25306,nssv26106,nssv22001,nssv21820,nssv27466,nssv21790,nssv24146,nssv25694,nssv25344,nssv26792,nssv22219,nssv26476,nssv26781,nssv24170,nssv25768,nssv25273,nssv27448,nssv26803,nssv23871,nssv24172,nssv24222,nssv26833,nssv21700,nssv26800,nssv22189,nssv28459,nssv25281,nssv27708,nssv27715,nssv24715,nssv27462,nssv26844,nssv24985,nssv21730,nssv27440,nssv27454,nssv23925,nssv24109,nssv24635,nssv25317,nssv28458,nssv24712,nssv21545,nssv27474,nssv27431,nssv26822,nssv24946,nssv24686,nssv26811,nssv26814 M 31 30 15 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10847,NA10863,NA11830,NA12155,NA12740,NA12802,NA12872,NA18502,NA18504,NA18517,NA18537,NA18552,NA18563,NA18564,NA18572,NA18853,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19144,NA19173,NA19221,NA19240 nsv817826 19 22792585 23412472 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418230,nssv1418231 M 112 2 0 "" NA19144,NA19145 nsv2442 19 22886865 22918039 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10181 S 9 1 0 "" NA18956 nsv2444 19 22897277 22943005 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5735 S 9 0 1 "" NA19129 nsv519744 19 22945590 22959810 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv658092,nssv693599,nssv697343 M 2026 1 2 "" nsv469842 19 22956074 23114254 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649863 M 265 1 1 Samples from several populations that are part of the HapMap project. "" nsv833788 19 22970885 23120505 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454628 S 95 1 0 "" nsv2445 19 22996557 23028969 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6777 S 9 0 1 "" NA12156 nsv458527 19 23101782 23184318 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535443 S 1557 0 1 "" 1780862042_A nsv833789 19 23121303 23279637 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454630,nssv1454629 M 95 1 1 "" nsv833790 19 23197812 23349360 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454631 S 95 1 0 "" nsv138139 19 23257033 23258677 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv156717 M 24 "" nsv509730 19 23262710 23304305 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621064 S 4 1 0 "" NA15510 nsv2446 19 23272990 23290286 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6778 S 9 1 0 "" NA12156 nsv509731 19 23418390 23449133 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621065 S 4 1 0 "" NA15510 nsv9687 19 23449607 23454200 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26125 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19144 essv10192 19 23474937 23534946 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18516 nsv509732 19 23494684 23562253 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621066 S 4 1 0 "" NA15510 nsv523603 19 23495542 23595881 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699396 S 2026 0 1 "" nsv524183 19 23534198 24282139 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700065 S 2026 1 0 "" nsv458528 19 23567873 23730242 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535444 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00017 nsv9688 19 23596144 23600870 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24198,nssv21850,nssv27752,nssv21575,nssv25342,nssv28491,nssv25035,nssv25369 M 31 0 8 Samples from several populations that are part of the HapMap project. "" NA10839,NA10847,NA10863,NA11830,NA12740,NA12802,NA18860,NA19221 nsv9689 19 23602241 23604846 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24248 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA07048 nsv2447 19 23604052 23637612 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1442 S 9 1 0 "" NA19240 nsv9690 19 23616105 23626043 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25790 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19173 nsv138443 19 23662411 23662411 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv157021 M 24 "" nsv9692 19 23682751 23684114 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27478 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18502 nsv9693 19 23685163 23687896 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23952,nssv25060 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA07029,NA10839 nsv9694 19 23700861 23703081 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27368 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19132 nsv138127 19 23778235 23778556 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv156705 M 24 "" nsv138104 19 23790633 23799222 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv156682 M 24 "" nsv2448 19 23799303 23822924 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1443 S 9 1 0 "" NA19240 nsv509733 19 23809556 23826570 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623754,nssv621067,nssv619747 M 4 3 0 "" NA10860,NA15510,NA18994 nsv458530 19 23848643 23944575 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535446 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01364 nsv528059 19 23852820 23861006 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704593 S 2026 0 1 "" nsv833791 19 23952703 24085177 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454632 S 95 0 1 "" nsv833793 19 24061049 24216635 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454633,nssv1454634,nssv1454636,nssv1454637,nssv1454635,nssv1454638,nssv1454639,nssv1454641,nssv1454642,nssv1454640,nssv1454644,nssv1454643,nssv1454647,nssv1454646,nssv1454645,nssv1454649,nssv1454651,nssv1454648,nssv1454650 M 95 1 18 "" nsv9695 19 24130564 24130791 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26144 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19144 esv34504 19 24131560 24295825 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6979792,essv6979793,essv6986946 M 771 1 0 "" NA18632 dgv1069e1 19 24131560 24349203 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv681,essv7645,essv5457 M 271 0 0 "" NA18632 dgv405n27 19 24146152 24282139 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv458531,nsv458532 M 1557 0 2 "" 1780862355_A,NINDS_94 nsv9696 19 24146390 24146504 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24687,nssv24977 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18563,NA19007 nsv9697 19 24146639 24147089 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27377,nssv27486 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18502,NA19132 nsv9698 19 24147801 24149295 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26915,nssv26825,nssv26490,nssv24996,nssv27386,nssv25367,nssv27494,nssv27482 M 31 2 6 Samples from several populations that are part of the HapMap project. "" NA11830,NA12155,NA18502,NA18504,NA18564,NA18972,NA19132,NA19240 nsv9699 19 24150419 24152142 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27425 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19132 nsv9700 19 24152364 24156224 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27532,nssv27464,nssv28492,nssv24738,nssv26504,nssv27490 M 31 3 3 Samples from several populations that are part of the HapMap project. "" NA12155,NA18502,NA18517,NA18552,NA18972,NA19221 nsv510760 19 24158001 24228840 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618960,nssv622747 M 4 0 2 "" NA10860,NA18994 nsv9701 19 24169019 24169140 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24767 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18853 nsv517869 19 24170037 24282139 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695274 S 2026 0 1 "" nsv469593 19 24216683 24414563 CNV Gain Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649708 M 265 2 0 Samples from several populations that are part of the HapMap project. "" nsv510761 19 24235421 24316643 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622748,nssv618961 M 4 0 2 "" NA10860,NA18994 nsv526151 19 24248960 24282139 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702410 S 2026 1 0 "" nsv442458 19 24252658 24256797 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv821689 19 24271666 24280183 CNV Loss Sebat_et_al_2004 15273396 ROMA Custom Nimblegen photoprint 85000 probe ROMA oligo array nssv1421327 S 31 0 1 "" nsv833794 19 32423910 32626502 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454652 S 95 0 1 "" nsv833795 19 32535227 32599962 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454654,nssv1454653,nssv1454659,nssv1454656,nssv1454655,nssv1454657,nssv1454658,nssv1454660,nssv1454661 M 95 2 7 "" nsv817827 19 32615675 32664393 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417442 S 112 0 1 "" NA18953 nsv516449 19 32615675 32810457 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv668476,nssv696137,nssv695275,nssv675560,nssv673750,nssv681738 M 2026 3 3 "" dgv1070e1 19 32658593 32953337 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv24741,esv190,essv14146,essv14089,essv22299 M 271 0 0 "" NA06985,NA11829,NA18861,NA19140 nsv510762 19 32836786 32891822 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620118 S 4 0 1 "" NA15510 esv33362 19 32986351 32987972 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv94474 S 51 0 1 "" 21808 esv33096 19 32989665 33010656 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv94419 S 51 0 1 "" 21808 nsv520798 19 33077108 33171613 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv675561,nssv681739 M 2026 2 0 "" nsv458533 19 33141651 33158120 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535449 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01090 nsv525352 19 33164183 33220146 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701471 S 2026 0 1 "" esv2751785 19 33367179 33461459 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6989396,essv6983873,essv6989871 M 771 0 1 "" BEC_727 nsv519213 19 33445190 33474702 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696702 S 2026 1 0 "" nsv527703 19 33461302 33466407 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704181 S 2026 0 1 "" nsv520556 19 33464816 33466407 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv689706,nssv672676,nssv678810,nssv672493 M 2026 0 4 "" nsv528339 19 33464816 33474702 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704921 S 2026 0 1 "" nsv2449 19 33631953 33677565 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6779 S 9 0 1 "" NA12156 nsv833796 19 33742778 33936080 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454662 S 95 1 0 "" nsv833797 19 33935188 34130591 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454663,nssv1454664 M 95 0 2 "" nsv2450 19 33988079 34033088 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5736 S 9 0 1 "" NA19129 nsv442459 19 34029192 34031422 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv1071e1 19 34038496 34356975 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv23675,esv90 M 271 0 0 "" NA10863 nsv517098 19 34084586 34092732 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv664981,nssv654209,nssv681528,nssv652429,nssv656972,nssv677869,nssv666420,nssv653779,nssv660687,nssv660590,nssv665995,nssv674025,nssv669451,nssv674561,nssv679047,nssv690736,nssv666556,nssv678646,nssv692543,nssv678191,nssv681392,nssv664217,nssv652136 M 2026 0 23 "" nsv520161 19 34084586 34103313 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697256 S 2026 0 1 "" nsv526642 19 34088467 34093608 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702967 S 2026 0 1 "" nsv2451 19 34269655 34296944 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7433 S 9 0 1 "" NA12156 nsv9704 19 34310203 34323396 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24764 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18552 nsv2452 19 34381502 34416771 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1444 S 9 1 0 "" NA19240 dgv1072e1 19 34447521 34456548 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1320,esv1210 M 271 0 0 "" NA18973 nsv2453 19 34449595 34493404 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1445,nssv2993 M 9 2 0 "" NA18555,NA19240 nsv833798 19 34561922 34734125 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454665 S 95 0 1 "" nsv522565 19 34578374 34586645 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705948 S 2026 0 1 "" nsv518118 19 34610357 34612613 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695535 S 2026 0 1 "" nsv2455 19 34620762 34657151 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9551,nssv2214,nssv4349,nssv5737,nssv6780,nssv1446 M 9 0 6 "" NA12156,NA12878,NA18507,NA18555,NA19129,NA19240 nsv833799 19 34733312 34866442 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454666 S 95 1 0 "" esv32922 19 34762868 34763098 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97599,essv97865 M 51 2 0 "" 21616,21837 nsv833800 19 34944487 35094215 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454667 S 95 0 1 "" nsv2456 19 34987906 35032546 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7434 S 9 0 1 "" NA12156 nsv510763 19 35042546 35087946 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622749,nssv617436,nssv618962 M 4 0 3 "" CHM,NA10860,NA18994 nsv2457 19 35061465 35101616 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2215,nssv10183,nssv1447,nssv4350,nssv5738,nssv7435 M 9 0 6 "" NA12156,NA12878,NA18555,NA18956,NA19129,NA19240 nsv138449 19 35080645 35084954 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv157027 M 24 "" nsv519832 19 35157036 35238024 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv658973,nssv684050 M 2026 2 0 "" nsv817829 19 35264596 35272437 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416107,nssv1416106 M 112 2 0 "" NA12801,NA12813 nsv2458 19 35378612 35422894 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2216 S 9 0 1 "" NA18555 nsv833801 19 35453338 35594061 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454668 S 95 0 1 "" nsv525912 19 35473391 35488438 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702116 S 2026 0 1 "" esv32918 19 35557808 35558067 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101347,essv97829,essv97997,essv96247,essv94150 M 51 1 4 "" 21805,21837,22259,22371,22394 nsv458534 19 35635517 35665223 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535450 S 1557 0 1 "" 1780854128_A nsv138500 19 35675864 35676785 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv157078 M 24 "" nsv2459 19 35847080 35879739 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4352 S 9 1 0 "" NA12878 nsv833802 19 35929886 36107804 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454669 S 95 1 0 "" nsv2460 19 35955766 35988210 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7436 S 9 0 1 "" NA12156 esv33227 19 35979790 35980636 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101166,essv97923,essv98527,essv96017,essv99718,essv94224 M 51 0 6 "" 21618,21837,22085,22127,22217,22394 nsv833804 19 36264971 36414542 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454670 S 95 1 0 "" nsv2461 19 36338187 36354904 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9552 S 9 1 0 "" NA18507 nsv510764 19 36466822 36487387 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622750 S 4 0 1 "" NA18994 nsv833805 19 36602072 36738737 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454671,nssv1454672 M 95 1 1 "" nsv137976 19 36769245 36769245 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv156554 M 24 "" nsv833806 19 37247664 37419259 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454674,nssv1454673 M 95 2 0 "" nsv525568 19 37327301 37337812 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701707 S 2026 0 1 "" nsv507893 19 37459601 37465601 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619218,nssv617944,nssv620640 M 4 3 0 "" CHM,NA10860,NA15510 nsv510471 19 37641942 37647942 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624203,nssv621461 M 4 0 2 "" NA15510,NA18994 nsv137998 19 37670765 37672073 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv156576 M 24 "" nsv138453 19 37722188 37722279 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv157031 M 24 "" nsv510472 19 37733681 37739681 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622285,nssv624204,nssv621462 M 4 0 3 "" NA10860,NA15510,NA18994 nsv519794 19 37768455 37777341 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv658735,nssv693903,nssv678219 M 2026 3 0 "" nsv527490 19 37810606 37830208 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703938 S 2026 0 1 "" nsv458535 19 37899485 38006753 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535451 S 1557 0 1 "" 1780854128_A nsv518446 19 37962731 38006753 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695884 S 2026 0 1 "" nsv516922 19 38026818 38065962 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703093,nssv695894,nssv657044,nssv654998 M 2026 0 4 "" nsv833807 19 38072584 38260436 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454675 S 95 0 1 "" nsv510473 19 38079846 38085846 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618447,nssv621463 M 4 0 2 "" CHM,NA15510 nsv9705 19 38161563 38244832 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26926 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19240 nsv2462 19 38208173 38252882 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7437 S 9 0 1 "" NA12156 nsv833808 19 38313633 38533448 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454676 S 95 0 1 "" nsv523161 19 38418215 38434210 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698871 S 2026 0 1 "" dgv1073e1 19 38468914 39273401 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv579,essv14034,essv15369,essv11295,essv9767 M 271 0 0 "" NA18862,NA18863 nsv2463 19 38477685 38496328 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4353 S 9 0 1 "" NA12878 nsv522571 19 38578194 38594649 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705955 S 2026 0 1 "" dgv139e55 19 38589007 39215623 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv34290,esv34628 M 771 2 0 "" NA18862,NA18863 nsv525549 19 38610263 38620583 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701687 S 2026 1 0 "" nsv509734 19 38710382 38770324 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621069 S 4 1 0 "" NA15510 nsv522979 19 38761006 38762038 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698649 S 2026 0 1 "" nsv509736 19 38835960 38977873 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621071,nssv621070 M 4 1 0 "" NA15510 nsv833809 19 38874742 39036502 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454677 S 95 0 1 "" essv22276 19 38899057 38945239 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12762 nsv507894 19 38932804 38938804 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619219 S 4 1 0 "" NA10860 esv33416 19 38951636 38959616 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97086 S 51 0 1 "" 22075 nsv2464 19 38987055 39019246 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2218 S 9 1 0 "" NA18555 nsv138149 19 39037820 39041611 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv156727 M 24 "" nsv2466 19 39137238 39164530 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7438 S 9 0 1 "" NA12156 nsv526512 19 39237395 39245765 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702822 S 2026 0 1 "" nsv524037 19 39275498 39301928 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699901 S 2026 0 1 "" nsv2467 19 39400857 39404541 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6781 S 9 1 0 "" NA12156 nsv509737 19 39411460 39469969 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619748,nssv623756,nssv621072,nssv618130 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv9706 19 39418853 39423316 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25394,nssv26937,nssv27759,nssv27472,nssv24304,nssv26163,nssv23668,nssv24250,nssv27434,nssv21880,nssv25085,nssv26836,nssv25331,nssv24792,nssv25323,nssv26518,nssv28493,nssv22249,nssv25392,nssv27540,nssv25021,nssv24713,nssv22031,nssv24135,nssv25002,nssv24009 M 31 26 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10863,NA11830,NA12155,NA12740,NA12802,NA12872,NA18502,NA18504,NA18517,NA18537,NA18563,NA18564,NA18572,NA18853,NA18860,NA18942,NA18975,NA18980,NA19007,NA19132,NA19144,NA19221,NA19240 nsv2468 19 39422052 39451984 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5739,nssv1448,nssv10992,nssv9854,nssv6782,nssv10185,nssv2995,nssv4354 M 9 8 0 "" NA12156,NA12878,NA15510,NA18507,NA18555,NA18956,NA19129,NA19240 nsv172 19 39422156 39434971 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv172 S 1 1 0 "" NA15510 nsv509738 19 39534544 39595153 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621073,nssv623757,nssv618131,nssv619749 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv2469 19 39625701 39659348 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4355 S 9 1 0 "" NA12878 nsv517392 19 39650771 39688942 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv684527,nssv692848,nssv676859,nssv692752,nssv672764,nssv675699,nssv660436,nssv654999,nssv701942,nssv662468,nssv693878,nssv661537,nssv656948,nssv664610,nssv687936,nssv666515,nssv679777,nssv660179,nssv651884,nssv691453,nssv687152,nssv677945,nssv663576,nssv705648,nssv671207 M 2026 1 24 "" dgv1074e1 19 39817858 39984175 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv4610,esv114 M 271 0 0 "" NA18524 nsv9707 19 39832159 39846418 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27480,nssv24817,nssv25812 M 31 0 3 Samples from several populations that are part of the HapMap project. "" NA18517,NA18853,NA19173 nsv442763 19 39835983 39838570 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv9708 19 39929473 39932142 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26212 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19144 nsv510474 19 40008307 40014307 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618448 S 4 0 1 "" CHM nsv520859 19 40008379 40036814 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv676421,nssv681853 M 2026 0 2 "" nsv138441 19 40105754 40105754 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv157019 M 24 "" nsv523802 19 40126078 40126846 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699631 S 2026 0 1 "" nsv525108 19 40269710 40281760 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701168 S 2026 0 1 "" nsv138264 19 40299483 40299483 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv156842 M 24 "" nsv138054 19 40299595 40299595 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv156632 M 24 "" nsv137954 19 40300509 40301099 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv156532 M 24 "" essv510 19 40345482 40359032 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18952 esv1374 19 40345482 40365173 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 "" nsv2470 19 40347121 40394405 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4646,nssv4356 M 9 0 2 "" NA12878,NA19129 dgv1075e1 19 40350568 40359032 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv759,essv19859,essv18504,essv19156,essv6410,essv18015,essv22786,essv3333,essv3617,essv12091,essv19375,essv3263,essv3600 M 271 0 0 "" NA07019,NA12234,NA12753,NA12763,NA12812,NA12878,NA18545,NA18948,NA18966,NA18967,NA18969,NA19003,NA19099 dgv1076e1 19 40350568 40365173 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv3644,essv3581,essv3512 M 271 0 0 "" NA18987,NA18991,NA18999 nsv516540 19 40352290 40377376 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv652467,nssv693531,nssv682844,nssv684675,nssv664551,nssv667843,nssv692467,nssv659660,nssv681907,nssv657163,nssv677962,nssv670002,nssv673375,nssv663412,nssv653075,nssv653116,nssv677790,nssv656611,nssv660672,nssv657740,nssv662815,nssv688932,nssv671892,nssv681693,nssv681304,nssv689069,nssv653745,nssv652068,nssv686446,nssv653522,nssv663730,nssv659561,nssv680450,nssv681038,nssv670880,nssv655133,nssv678942,nssv673924,nssv691938,nssv665727,nssv673279,nssv687849,nssv662228,nssv654521,nssv689954,nssv687986,nssv674930,nssv672442,nssv662343,nssv653978,nssv684117,nssv672864,nssv675504,nssv689606,nssv662250,nssv655280,nssv662835,nssv675407,nssv667708,nssv676378,nssv676008,nssv674790,nssv675871,nssv652555,nssv693101,nssv692580,nssv661805,nssv663282,nssv662575,nssv667088,nssv676584,nssv652215,nssv682958,nssv665926,nssv685775,nssv666590,nssv676261,nssv681872,nssv691725,nssv671777,nssv661759,nssv683261,nssv668492,nssv662623,nssv660229,nssv671659,nssv684256,nssv675466,nssv692295,nssv688503,nssv667896,nssv671174,nssv664106,nssv681252,nssv671747,nssv674147,nssv652344,nssv654157,nssv671826,nssv683923,nssv659088,nssv678533,nssv670314,nssv690889,nssv693311,nssv693258,nssv652095,nssv676518,nssv659369,nssv670285,nssv680796,nssv683380,nssv677674,nssv690832,nssv657109,nssv688048 M 2026 0 116 "" nsv9709 19 40352601 40359169 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24789,nssv24306 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA10863,NA18552 dgv406n27 19 40353627 40354649 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv458561,nsv458558,nsv458539,nsv458537,nsv458549,nsv458554,nsv458559,nsv458560,nsv458557,nsv458542,nsv458544,nsv458545,nsv458556,nsv458546,nsv458543,nsv458548,nsv458541,nsv458547,nsv458538,nsv458536,nsv458553,nsv458565,nsv458555,nsv458550,nsv458564,nsv458562 M 1557 0 26 "" 1780846320_A,1780862007_A,1780862162_A,HGDP00684,HGDP00759,HGDP00760,HGDP00769,HGDP00785,HGDP00958,HGDP00975,HGDP01067,HGDP01097,HGDP01195,HGDP01203,HGDP01222,HGDP01230,HGDP01290,HGDP01291,HGDP01311,HGDP01321,HGDP01333,HGDP01334,HGDP01340,HGDP01349,NINDS_14,NINDS_61 nsv817830 19 40353627 40354649 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416110,nssv1417481,nssv1416109,nssv1416203,nssv1416108,nssv1416202,nssv1418112 M 112 0 7 "" NA11881,NA12801,NA12812,NA12813,NA12878,NA12891,NA18965 nsv817831 19 40353627 40365083 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417791,nssv1417792 M 112 0 2 "" NA10863,NA12234 dgv1077e1 19 40355683 40356647 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv6784,essv25039 M 271 0 0 "" NA12801,NA18594 dgv1078e1 19 40355683 40359032 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2134,essv708,essv23723,essv4336,essv5954 M 271 0 0 "" NA12813,NA18577,NA18622,NA18940,NA18978 dgv1079e1 19 40355683 40361844 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv19886,essv22688 M 271 0 0 "" NA11881,NA12004 essv20713 19 40355683 40365173 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12752 nsv510765 19 40400066 40582508 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620119 S 4 0 1 "" NA15510 dgv1080e1 19 40402918 40578953 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv24365,esv394,essv7208,essv17963 M 271 0 0 "" NA12003,NA12707,NA18547 nsv9710 19 40412021 40416734 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24739 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18563 nsv524195 19 40414066 40415840 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700078 S 2026 0 1 "" nsv833810 19 40474428 40663799 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454678 S 95 1 0 "" nsv9711 19 40489030 40497036 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25348 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18537 nsv173 19 40529245 40558675 CNV Loss Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv173 S 1 0 1 "" NA15510 nsv2471 19 40529245 40594955 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1449,nssv2219,nssv10993 M 9 0 3 "" NA15510,NA18555,NA19240 nsv9712 19 40540646 40556247 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24161,nssv22061,nssv25046,nssv24330,nssv21940,nssv25077,nssv25071,nssv25096,nssv25520,nssv25102,nssv21605,nssv25474,nssv25419,nssv25052,nssv27498,nssv21910,nssv25027,nssv21970,nssv24332,nssv25121,nssv22121,nssv24790,nssv25497,nssv24765,nssv22000 M 31 0 11 Samples from several populations that are part of the HapMap project. "" NA07048,NA10847,NA10863,NA12740,NA12802,NA12872,NA18563,NA18564,NA18972,NA18975,NA19007 esv32683 19 40540647 40556189 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101433,essv97594,essv101208,essv93939,essv96844,essv96761,essv101045,essv94023,essv94406,essv97962,essv97828,essv93039,essv95265,essv97336,essv101680,essv95829,essv94476,essv92806,essv92810,essv96200,essv96709,essv97240,essv95938,essv93551,essv93278,essv99716,essv95031,essv92562,essv96554,essv96450,essv99310,essv97779,essv100575,essv100559,essv94274 M 51 25 5 "" 21603,21616,21618,21634,21659,21693,21802,21808,21837,21863,21872,21879,21909,21911,21932,21944,22007,22011,22075,22127,22128,22170,22217,22231,22233,22261,22275,22278,22298,22394 nsv442764 19 40541333 40553688 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv833811 19 40542097 40721375 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454679 S 95 1 0 "" nsv9714 19 40576676 40579416 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25543 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA12740 nsv138144 19 40694221 40694271 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv156722 M 24 "" nsv526166 19 40848428 40851208 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702426 S 2026 0 1 "" nsv817832 19 40848428 40851208 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417794 S 112 0 1 "" NA12264 nsv138418 19 40882496 40885771 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv156996 M 24 "" nsv515536 19 40911365 40932800 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv663852,nssv690309,nssv704831,nssv663674,nssv658673,nssv674588,nssv691805,nssv670781 M 2026 0 8 "" dgv51n68 19 41023753 41199434 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH nsv833812,nsv833813 M 95 0 5 "" nsv833815 19 41211643 41316776 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454687,nssv1454686,nssv1454685 M 95 0 3 "" nsv138090 19 41356681 41358859 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv156668 M 24 "" nsv509739 19 41387373 41496199 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621074 S 4 1 0 "" NA15510 nsv520020 19 41413208 41514434 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv692753,nssv660125 M 2026 0 2 "" nsv9715 19 41421528 41503589 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23726,nssv25834,nssv27536,nssv26948,nssv24187,nssv25110,nssv22279,nssv28494,nssv21635,nssv24356,nssv27766,nssv27548,nssv24815,nssv26907,nssv27488 M 31 10 5 Samples from several populations that are part of the HapMap project. "" NA07048,NA10839,NA10847,NA18502,NA18504,NA18517,NA18563,NA18572,NA18860,NA18942,NA18972,NA18975,NA19173,NA19221,NA19240 nsv2472 19 41454921 41460426 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6783 S 9 1 0 "" NA12156 nsv2473 19 41490030 41505792 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9553 S 9 1 0 "" NA18507 nsv2474 19 41496309 41557255 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4357,nssv2220,nssv10994 M 9 0 3 "" NA12878,NA15510,NA18555 nsv833816 19 41516097 41726127 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454688 S 95 1 0 "" nsv174 19 41523559 41557255 CNV Loss Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv174 S 1 0 1 "" NA15510 nsv9716 19 41532090 41543017 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27544,nssv22030,nssv24213,nssv25127,nssv27773,nssv23753,nssv25135 M 31 6 1 Samples from several populations that are part of the HapMap project. "" NA10839,NA12802,NA18860,NA18942,NA18972,NA18975,NA19007 nsv833817 19 41670692 41887535 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454689 S 95 0 1 "" nsv138053 19 41738022 41738337 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv156631 M 24 "" nsv469794 19 41821698 42002097 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649815 M 265 0 0 Samples from several populations that are part of the HapMap project. "" esv34384 19 41825908 42022453 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6979102,essv6979101 M 771 0 1 "" NA12891 nsv817833 19 41838534 42049129 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416204 S 112 0 1 "" NA12891 nsv2475 19 41843381 41861780 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2996 S 9 1 0 "" NA18555 nsv521605 19 41953650 42175284 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698221 S 2026 0 1 "" nsv458569 19 42023454 42104727 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535481 S 1557 0 1 "" NINDS_142 nsv523848 19 42049129 42179472 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699682 S 2026 0 1 "" nsv524754 19 42075734 42095064 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700745 S 2026 0 1 "" nsv833818 19 42119648 42294640 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454690 S 95 1 0 "" nsv509740 19 42153620 42224450 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623758 S 4 1 0 "" NA18994 nsv138138 19 42155284 42155351 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv156716 M 24 "" nsv138492 19 42157587 42158440 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv157070 M 24 "" nsv2477 19 42309188 42354047 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7439 S 9 0 1 "" NA12156 nsv9717 19 42413600 42488538 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24382,nssv28495,nssv27556,nssv24239,nssv22309,nssv23780,nssv21665,nssv27780,nssv24840,nssv25190,nssv26918,nssv25855,nssv26958,nssv27552,nssv27496 M 31 10 5 Samples from several populations that are part of the HapMap project. "" NA07048,NA10839,NA10847,NA18502,NA18504,NA18517,NA18563,NA18572,NA18860,NA18942,NA18972,NA18975,NA19173,NA19221,NA19240 nsv509741 19 42447892 42497859 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619750,nssv618132,nssv621075,nssv623759 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 dgv1081e1 19 42486690 42743446 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1065,essv23630 M 271 0 0 "" NA07055 nsv9718 19 42530910 42544712 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27560,nssv23807,nssv24265,nssv26532,nssv25215 M 31 0 5 Samples from several populations that are part of the HapMap project. "" NA10839,NA12155,NA18942,NA18972,NA18975 nsv833819 19 42591341 42743439 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454691 S 95 1 0 "" nsv2478 19 42717180 42735658 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7440 S 9 0 1 "" NA12156 nsv833820 19 42882561 43105889 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454693,nssv1454695,nssv1454692,nssv1454694 M 95 0 4 "" nsv138463 19 43318659 43320603 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv157041 M 24 "" nsv833821 19 43321777 43448632 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454696 S 95 0 1 "" nsv833822 19 43452588 43636945 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454698,nssv1454697 M 95 0 2 "" nsv833823 19 43547390 43727640 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454699 S 95 0 1 "" nsv833824 19 43606458 43776598 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454700 S 95 0 1 "" nsv833826 19 43636946 43876387 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454702,nssv1454701 M 95 0 2 "" nsv2479 19 43657587 43692049 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2997 S 9 1 0 "" NA18555 nsv833827 19 43684894 43876387 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454703 S 95 1 0 "" nsv138081 19 43723922 43723922 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv156659 M 24 "" nsv521114 19 43760481 43767232 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv693337,nssv682401 M 2026 0 2 "" nsv833828 19 43776599 43949819 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454704 S 95 0 1 "" nsv817834 19 43866172 43929790 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417698 S 112 1 0 "" NA18999 nsv7307 19 43913069 44013422 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5740,nssv2221,nssv10186,nssv6785,nssv9855,nssv10187,nssv9335,nssv5741,nssv2222,nssv10995,nssv6784,nssv4358,nssv1450 M 9 0 0 "" NA12156,NA12878,NA15510,NA18507,NA18517,NA18555,NA18956,NA19129,NA19240 nsv9719 19 43952054 43954292 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26576 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA12155 nsv175 19 43964751 44004122 OTHER Inversion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv175 S 1 0 0 "" NA15510 nsv9720 19 43969171 43975216 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28496,nssv26590 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA12155,NA19221 nsv510475 19 43973001 43979001 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622286,nssv624205 M 4 0 2 "" NA10860,NA18994 nsv9721 19 43973697 43978968 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24408,nssv25356,nssv25373,nssv26604,nssv24036,nssv24358,nssv25146,nssv27568 M 31 0 8 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10863,NA12155,NA18537,NA18564,NA18972,NA18980 nsv9722 19 43989913 43999413 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28497 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19221 nsv458570 19 44225594 44230432 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535482 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00455 nsv526711 19 44225594 44230432 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703050 S 2026 0 1 "" nsv458571 19 44225594 44319890 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535483 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01348 nsv522530 19 44243990 44265758 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705902 S 2026 0 1 "" nsv833829 19 44261521 44422617 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454706,nssv1454705 M 95 0 2 "" nsv507895 19 44297165 44303165 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623260 S 4 1 0 "" NA18994 nsv518540 19 44389814 44423623 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695984 S 2026 0 1 "" nsv833830 19 44401378 44529686 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454708,nssv1454707 M 95 0 2 "" nsv2480 19 44519625 44554291 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1451 S 9 1 0 "" NA19240 dgv202n21 19 44536016 44541942 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv520245,nsv526707 M 2026 0 2 "" nsv523856 19 44605398 44689312 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699691 S 2026 0 1 "" nsv522811 19 44696480 44700060 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698457 S 2026 0 1 "" nsv137930 19 44711329 44719696 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv156508 M 24 "" nsv2481 19 44764741 44797347 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1452 S 9 1 0 "" NA19240 nsv2482 19 44817637 44862606 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2223 S 9 0 1 "" NA18555 nsv817835 19 44824665 44853859 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417280 S 112 0 1 "" NA18608 nsv9723 19 44913308 44919554 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24434,nssv27534 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA07048,NA18517 dgv1082e1 19 44919744 45212970 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv14502,essv9077,esv410,essv11498,essv10861,essv16795 M 271 0 0 "" NA18871,NA18872,NA19132,NA19173,NA19202 nsv9725 19 45007359 45104363 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28498,nssv26929,nssv23834 M 31 2 1 Samples from several populations that are part of the HapMap project. "" NA18504,NA18942,NA19221 nsv2483 19 45032481 45127345 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1453,nssv2224,nssv6787,nssv10188,nssv4360,nssv10997,nssv5745 M 9 0 7 "" NA12156,NA12878,NA15510,NA18555,NA18956,NA19129,NA19240 nsv509742 19 45036196 45144858 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623760 S 4 1 0 "" NA18994 nsv510766 19 45036196 45144858 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620120 S 4 0 1 "" NA15510 nsv2484 19 45038831 45072938 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5746,nssv2225,nssv6786,nssv9554,nssv4359,nssv10996 M 9 6 0 "" NA12156,NA12878,NA15510,NA18507,NA18555,NA19129 nsv482218 19 45045803 45132373 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558579 S 1 1 0 "" KB1 nsv176 19 45049019 45072938 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv176 S 1 1 0 "" NA15510 nsv471484 19 45065108 45096549 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548406,nssv548405,nssv547802 M 3 "" nsv177 19 45065417 45081095 CNV Loss Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv177 S 1 0 1 "" NA15510 nsv442460 19 45066660 45073371 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv2485 19 45082323 45108201 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2227,nssv5747 M 9 2 0 "" NA18555,NA19129 nsv9726 19 45168293 45169888 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28499 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19221 nsv2486 19 45225055 45250957 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9336 S 9 1 0 "" NA18517 nsv2488 19 45285658 45323246 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2228,nssv7441 M 9 0 2 "" NA12156,NA18555 dgv1083e1 19 45304260 45531360 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv255,essv2674 M 271 0 0 "" NA18967 esv33840 19 45355279 45361177 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101424 S 51 1 0 "" 21805 nsv528831 19 45357764 45376759 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705505 S 2026 0 1 "" nsv9727 19 45410153 45412566 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25566 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA12740 nsv9728 19 45412566 45413827 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22060,nssv25201,nssv24460,nssv24063,nssv26940,nssv25398,nssv23861 M 31 0 7 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA12802,NA18504,NA18537,NA18564,NA18942 nsv833831 19 45488580 45652705 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454710,nssv1454709 M 95 0 2 "" nsv138059 19 45697830 45697830 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv156637 M 24 "" nsv2489 19 45836874 45874010 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6788 S 9 0 1 "" NA12156 nsv833832 19 45952203 46026437 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454720,nssv1454717,nssv1454719,nssv1454712,nssv1454726,nssv1454713,nssv1454711,nssv1454718,nssv1454716,nssv1454715,nssv1454722,nssv1454721,nssv1454725,nssv1454724,nssv1454723,nssv1454728,nssv1454727,nssv1454714 M 95 0 18 "" dgv1084e1 19 45983467 46237908 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv833,essv2976,esv832,essv497 M 271 0 0 "" NA18952,NA18973,NA18981 nsv521459 19 46005042 46025124 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698069 S 2026 0 1 "" nsv817836 19 46025124 46055605 CNV Gain+Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416690,nssv1416692,nssv1416691 M 112 1 2 "" NA19116,NA19119,NA19120 nsv9729 19 46029645 46086247 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25589,nssv25423,nssv25152,nssv24321,nssv23888,nssv27576 M 31 0 6 Samples from several populations that are part of the HapMap project. "" NA12740,NA18537,NA18942,NA18972,NA18975,NA19007 nsv2490 19 46031887 46065109 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5748,nssv2229 M 9 2 0 "" NA18555,NA19129 esv33053 19 46032469 46092475 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101494,essv97571,essv101204,essv93820,essv96855,essv95083,essv94671,essv93994,essv101338,essv94363,essv97838,essv95452,essv95237,essv97296,essv101745,essv95890,essv94612,essv92989,essv92700,essv96099,essv96638,essv95977,essv93467,essv99650,essv94929,essv92661,essv96495,essv99179,essv97748,essv100204,essv100548,essv100439,essv96407 M 51 33 0 "" 21603,21616,21618,21634,21659,21721,21791,21802,21805,21808,21837,21847,21872,21879,21909,21911,21932,21939,21944,22007,22011,22127,22128,22217,22231,22233,22261,22275,22278,22286,22298,22300,22371 nsv516972 19 46033429 46055605 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv655328,nssv657164,nssv653537,nssv666017,nssv678007,nssv692296,nssv667216,nssv676054,nssv665443,nssv691250,nssv681908,nssv661715,nssv691260,nssv691625,nssv687048,nssv664482,nssv655859,nssv675964,nssv657342,nssv671263,nssv655281,nssv693208,nssv676778,nssv665098,nssv656230 M 2026 0 25 "" nsv482219 19 46041283 46048192 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558580 S 1 1 0 "" KB1 nsv442765 19 46042834 46072786 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv433318 19 46043107 46056935 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463199 S 9 0 1 "" NA15510 nsv438302 19 46046373 46065873 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470746,nssv470747 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA18952,NA18973 dgv407n27 19 46048591 46055605 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv458572,nsv458577,nsv458580,nsv458581,nsv458573,nsv458575,nsv458576,nsv458579,nsv458578 M 1557 0 9 "" HGDP00328,HGDP00656,HGDP00664,HGDP00722,HGDP00752,HGDP00758,HGDP01205,HGDP01211,NINDS_131 nsv817837 19 46048591 46055605 CNV Gain+Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417596,nssv1416014,nssv1417364,nssv1417486,nssv1417622,nssv1417111,nssv1417418,nssv1416013,nssv1418237 M 112 1 8 "" NA06985,NA12740,NA12750,NA18537,NA18944,NA18952,NA18965,NA18978,NA18987 dgv55n17 19 46100586 46215927 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437830,nsv437831 M 60 0 2 "" NA18506,NA18872 nsv523686 19 46123775 46200282 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699492 S 2026 1 0 "" dgv1085e1 19 46123775 46220507 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv13391,essv8029,essv16184 M 271 0 0 "" NA18506,NA18871,NA18872 nsv517597 19 46125453 46200282 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv665150,nssv658691,nssv683381,nssv686715,nssv679727,nssv653026,nssv652468 M 2026 0 7 "" nsv509743 19 46129206 46246920 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621076 S 4 1 0 "" NA15510 nsv433319 19 46140574 46201870 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463200 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA18507 dgv408n27 19 46141443 46200282 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv458582,nsv458583,nsv458584 M 1557 0 3 "" HGDP00927,HGDP00941,HGDP00943 nsv442461 19 46143504 46205185 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv2491 19 46252788 46296062 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7443 S 9 0 1 "" NA12156 nsv2492 19 46294299 46328940 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5749,nssv2998 M 9 2 0 "" NA18555,NA19129 nsv523521 19 46372264 46394266 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699294 S 2026 0 1 "" nsv521311 19 46548726 46574552 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697919 S 2026 1 0 "" nsv519523 19 46645768 46693050 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv671711,nssv659196,nssv656673 M 2026 0 3 "" nsv510767 19 46650121 46741005 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622752 S 4 0 1 "" NA18994 nsv442462 19 46668500 46699711 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv817838 19 46675662 46693050 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418521,nssv1418522 M 112 0 2 "" NA19193,NA19194 nsv521657 19 46675968 46711952 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694470 S 2026 0 1 "" nsv523947 19 46711027 46711952 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699794 S 2026 0 1 "" nsv2493 19 46726211 46741937 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9555 S 9 1 0 "" NA18507 nsv442463 19 46751686 46754143 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv519408 19 46758119 46863746 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696837 S 2026 1 0 "" nsv2494 19 46811009 46844303 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5750 S 9 1 0 "" NA19129 nsv522854 19 46812123 47622844 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698508 S 2026 1 0 "" nsv507896 19 46841674 46847674 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623261,nssv619220 M 4 2 0 "" NA10860,NA18994 nsv442464 19 46879180 46883135 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv482220 19 46904370 46926276 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558581 S 1 1 0 "" KB1 nsv2495 19 46954051 46985680 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1454 S 9 1 0 "" NA19240 nsv520239 19 47049295 47622844 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv693635,nssv662078 M 2026 0 2 "" nsv138436 19 47138086 47141859 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv157014 M 24 "" nsv138051 19 47186335 47186478 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv156629 M 24 "" nsv2496 19 47326702 47361596 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4362 S 9 1 0 "" NA12878 nsv833833 19 47349116 47474962 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454729 S 95 0 1 "" nsv526186 19 47368321 47895347 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702448 S 2026 1 0 "" esv2422471 19 47424981 48361325 CNV Deletion Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161412 S 181 0 1 "" ND04178 nsv833834 19 47428284 47526867 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454730 S 95 0 1 "" dgv15e196 19 47683129 48361325 CNV Deletion Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array esv2422468,esv2422227 M 181 0 2 "" ND00940,ND01548 dgv1086e1 19 47734587 48127284 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv4604,essv7112 M 271 0 0 "" NA18524,NA18537 dgv1087e1 19 47734587 48590893 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv21266,essv9246,essv17017,essv6883,esv817,essv17754,essv21386,essv775 M 271 0 0 "" NA10831,NA10855,NA12740,NA18605,NA18956,NA19128,NA19144 nsv482221 19 47776235 47790922 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558582 S 1 1 0 "" KB1 esv32716 19 47846315 47846476 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97130 S 51 1 0 "" 22075 dgv1088e1 19 47856258 48314448 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv5831,essv3442,essv21587,essv15921,essv595,essv3589 M 271 0 0 "" NA12146,NA18524,NA18947,NA18956,NA18969,NA19205 dgv140e55 19 47889875 48497200 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv2751790,esv34426,esv34541,esv34661,esv2751786 M 771 5 0 "" BEC_298,BEC_402,NA18537,NA18605,NA19203 nsv516973 19 47894610 48558663 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv667844,nssv684645,nssv652396,nssv658577,nssv683893,nssv665778,nssv674492,nssv676532,nssv653538,nssv676485,nssv655402,nssv657773,nssv687243,nssv696061,nssv662469,nssv684051,nssv686088,nssv680266,nssv686397,nssv665360,nssv660561,nssv679381,nssv656334,nssv679997,nssv687193,nssv688337,nssv692731,nssv682436,nssv652469,nssv679588,nssv689671,nssv662323,nssv661745,nssv655906,nssv660409,nssv705054,nssv689264,nssv665996,nssv688576,nssv695103,nssv688703,nssv670753,nssv655282,nssv662201,nssv687974,nssv669686,nssv660076,nssv662601,nssv667123,nssv651730,nssv657886,nssv662964,nssv686928,nssv651743,nssv681120,nssv683781,nssv662683,nssv680240,nssv671321,nssv672419,nssv668205,nssv679427,nssv691695,nssv673826,nssv673871,nssv683281,nssv660785,nssv672213,nssv689731,nssv676988,nssv673399,nssv676379,nssv681716,nssv690851,nssv665269,nssv656652,nssv684572,nssv689870,nssv693285,nssv668451,nssv686136,nssv672624,nssv678711,nssv690072,nssv664708,nssv667444,nssv685926,nssv692849,nssv678620,nssv681281,nssv689337,nssv658283,nssv669773,nssv679198,nssv678346,nssv673618,nssv668921,nssv684356,nssv652838,nssv681119,nssv662763,nssv691670,nssv666874,nssv654498,nssv688485,nssv688767,nssv663889,nssv666193,nssv688159,nssv663302,nssv657184,nssv690042,nssv675987,nssv662643,nssv680394,nssv667770,nssv667897,nssv661942,nssv657045,nssv683859,nssv670837,nssv669886,nssv687960,nssv690604,nssv684315,nssv663441,nssv658914,nssv686262,nssv653337,nssv671544,nssv665748,nssv684619,nssv692079,nssv653257,nssv666625,nssv680911,nssv681253,nssv699170,nssv675467,nssv691308,nssv667174,nssv656634,nssv658576,nssv673183,nssv666495,nssv655504,nssv667466,nssv687262,nssv683647,nssv692672,nssv676324,nssv672590,nssv657917,nssv692468,nssv685441,nssv686929,nssv686355,nssv653000,nssv653780,nssv665728,nssv678866,nssv655881,nssv653027,nssv682175,nssv652216,nssv674458,nssv686447,nssv663262,nssv679921,nssv654589,nssv675637,nssv692147,nssv689265,nssv689507,nssv684401,nssv674589,nssv675110,nssv698971,nssv672225,nssv672376,nssv659035,nssv659577,nssv664284,nssv654038,nssv653171,nssv687813,nssv659610,nssv665065,nssv671150,nssv679337,nssv680512,nssv658621,nssv655993,nssv662491,nssv652174,nssv663397,nssv701750,nssv681193,nssv669431,nssv657763,nssv684802,nssv691939,nssv692207,nssv660196,nssv656458,nssv659746,nssv668206,nssv657239,nssv692610,nssv662927,nssv681305,nssv663361,nssv693102,nssv663242,nssv681626,nssv677092,nssv681393,nssv665519,nssv684024,nssv657718,nssv692873,nssv659632,nssv666457,nssv658170,nssv690345 M 2026 28 197 "" nsv9730 19 47895299 48494496 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26961,nssv26951,nssv22120,nssv28500,nssv26630,nssv25501,nssv27558,nssv26617,nssv25524,nssv25635,nssv25547,nssv27542,nssv25612,nssv25381,nssv27550,nssv25478,nssv26231,nssv25207 M 31 7 3 Samples from several populations that are part of the HapMap project. "" NA12155,NA12740,NA12802,NA18504,NA18517,NA18537,NA18980,NA19007,NA19144,NA19221 nsv510768 19 47909197 47991203 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618964 S 4 0 1 "" NA10860 nsv833835 19 47912047 48115213 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454731,nssv1454732,nssv1454733 M 95 3 0 "" nsv482222 19 47917635 47936508 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558583 S 1 1 0 "" KB1 dgv1089e1 19 47929604 48485993 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv4934,essv14841,essv7950,essv5676,essv20831,essv18469 M 271 0 0 "" NA10855,NA11832,NA18537,NA18605,NA19119,NA19203 dgv141e55 19 47932219 48422999 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv2751788,esv2751791,esv2751793,esv2751787,esv2751789 M 771 0 5 "" BEC_446,BEC_739,BEC_98,SPC_186,SPC_7 nsv471408 19 47950225 47961671 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548195,nssv548194,nssv548193 M 3 "" nsv482038 19 47950225 47961671 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558399 S 1 1 0 "" KB1 esv33217 19 47952718 48237089 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100976,essv96730 M 51 0 2 "" 21693,22011 dgv1090e1 19 47957445 48127284 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv13717,essv9909 M 271 0 0 "" NA19119,NA19145 nsv2497 19 47970563 48243144 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6790,nssv10190 M 9 0 2 "" NA12156,NA18956 dgv409n27 19 47975960 48285261 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv458587,nsv458586,nsv458593 M 1557 0 3 "" HGDP00388,HGDP01104,NINDS_84 dgv410n27 19 47975960 48321413 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv458592,nsv458589,nsv458588,nsv458626,nsv458625 M 1557 5 0 "" 1780862057_A,1780862334_A,1780862408_A,HGDP01329,NINDS_247 dgv411n27 19 47975960 48484147 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv458591,nsv458590 M 1557 0 2 "" HGDP01232,HGDP01336 dgv142e55 19 47979077 48230800 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv34210,esv34849,esv2751792 M 771 0 3 "" BEC_468,NA18524,NA18969 nsv442766 19 47986230 48149894 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv1091e1 19 47997284 48296563 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1664,essv11331 M 271 0 0 "" NA18992,NA19128 nsv817841 19 48013905 48093776 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417456 S 112 1 0 "" NA18953 nsv817842 19 48013905 48231029 CNV Gain+Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416693,nssv1417637,nssv1418413,nssv1418232,nssv1418233 M 112 3 2 "" NA12146,NA18992,NA19119,NA19144,NA19145 nsv817843 19 48013905 48338970 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417124 S 112 1 0 "" NA18537 essv17365 19 48024719 48171792 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18517 nsv471409 19 48063198 48075711 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548196,nssv548197,nssv548198 M 3 "" nsv482039 19 48063198 48075711 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558400 S 1 1 0 "" KB1 dgv412n27 19 48066441 48160500 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv458595,nsv458597,nsv458594 M 1557 3 0 "" HGDP00062,HGDP00099,HGDP01348 dgv413n27 19 48066441 48253562 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv458610,nsv458605,nsv458609,nsv458619,nsv458611,nsv458604,nsv458613,nsv458612,nsv458599,nsv458606,nsv458601,nsv458616,nsv458608,nsv458614,nsv458603,nsv458598,nsv458600 M 1557 0 17 "" 1780854302_A,1780854485_A,1798860552_A,HGDP00041,HGDP00105,HGDP00531,HGDP00620,HGDP00820,HGDP00967,HGDP01206,HGDP01208,HGDP01249,HGDP01291,HGDP01330,HGDP01331,HGDP01332,HGDP01358 dgv414n27 19 48066441 48285261 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv458602,nsv458622,nsv458615,nsv458624,nsv458620,nsv458623,nsv458617,nsv458621 M 1557 8 0 "" HGDP00039,HGDP00135,HGDP00644,HGDP00721,HGDP00791,HGDP00892,HGDP00984,HGDP01191 dgv415n27 19 48066441 48387680 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv458649,nsv458639,nsv458648,nsv458641,nsv458637,nsv458636,nsv458642,nsv458675,nsv458635 M 1557 9 0 "" 1780862212_A,HGDP00673,HGDP00676,HGDP00683,HGDP00738,HGDP00964,HGDP01029,HGDP01033,HGDP01164 dgv416n27 19 48066441 48387680 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv458644,nsv458631,nsv458627,nsv458646,nsv458628,nsv458634,nsv458647,nsv458638,nsv458630,nsv458633,nsv458643,nsv458632,nsv458645 M 1557 0 13 "" 1780854103_A,1780854419_A,1780854522_A,1780862457_A,HGDP00319,HGDP00323,HGDP00736,HGDP01246,HGDP01264,HGDP01282,HGDP01378,NINDS_101,NINDS_13 nsv471410 19 48099608 48113829 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548199,nssv548202,nssv548201 M 3 "" nsv482040 19 48099608 48113829 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558401 S 1 1 0 "" KB1 nsv458650 19 48111750 48231029 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535562 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01211 dgv417n27 19 48114839 48387680 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv458665,nsv458677,nsv458659,nsv458670,nsv458673,nsv458664,nsv458678,nsv458681,nsv458668,nsv458679,nsv458666,nsv458682,nsv458669,nsv458671,nsv458652,nsv458672,nsv458661,nsv458680 M 1557 0 18 "" 1780854483_A,1780862346_A,1788485381_A,HGDP00423,HGDP00678,HGDP00698,HGDP00740,HGDP00769,HGDP01063,HGDP01254,HGDP01259,HGDP01284,HGDP01337,HGDP01365,HGDP01366,NINDS_156,NINDS_195,NINDS_205 esv2751794 19 48116890 48403432 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6984276,essv6984277 M 771 1 0 "" BEC_683 nsv471411 19 48120124 48133170 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548203,nssv548205,nssv548204 M 3 "" nsv482041 19 48120124 48133170 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558402 S 1 1 0 "" KB1 nsv458653 19 48130590 48285261 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535565 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00330 dgv418n27 19 48150403 48231029 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv458655,nsv458654 M 1557 0 2 "" HGDP01069,NINDS_26 dgv419n27 19 48150403 48329023 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv458658,nsv458656,nsv458676,nsv458667,nsv458657,nsv458660 M 1557 6 0 "" HGDP00112,HGDP00205,HGDP00234,HGDP00258,HGDP00577,HGDP01271 nsv510769 19 48155337 48194927 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617437 S 4 0 1 "" CHM nsv833837 19 48162116 48366577 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454734,nssv1454736,nssv1454735 M 95 3 0 "" nsv469727 19 48171288 48356279 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649748 M 265 0 15 Samples from several populations that are part of the HapMap project. "" dgv1092e1 19 48182927 48496602 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv9520,essv11479,essv13348,essv9571 M 271 0 0 "" NA18500,NA18501,NA18521,NA18856 dgv420n27 19 48197824 48387680 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv458689,nsv458691,nsv458683,nsv458690,nsv458692 M 1557 0 5 "" HGDP00520,HGDP00905,HGDP00924,HGDP00933,HGDP01323 dgv421n27 19 48197824 48387680 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv458687,nsv458695,nsv458694,nsv458697,nsv458693,nsv458686,nsv458688,nsv458684 M 1557 8 0 "" 1780854499_A,1782681164_A,HGDP00210,HGDP00631,HGDP00696,HGDP01078,HGDP01274,HGDP01386 nsv437832 19 48198909 48492801 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467713 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18500 dgv1093e1 19 48200873 48403432 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv12901,essv3514,essv14026 M 271 0 0 "" NA18522,NA18862,NA18999 nsv471412 19 48203649 48222471 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548206,nssv548207,nssv548208 M 3 "" nsv482042 19 48203649 48222471 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558403 S 1 1 0 "" KB1 nsv817844 19 48205499 48387680 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416410 S 112 0 1 "" NA18856 dgv1094e1 19 48230781 48481823 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv974,essv17374,essv742,essv11405,essv21651 M 271 0 0 "" NA12761,NA18517,NA18981,NA19003,NA19192 nsv442767 19 48248681 48288811 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" esv2751795 19 48251170 48562727 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6984990,essv6990056 M 771 0 1 "" SPC_29 nsv817845 19 48253562 48285261 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415796 S 112 0 1 "" NA12875 dgv422n27 19 48253562 48387680 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv458701,nsv458699,nsv458698,nsv458702 M 1557 0 4 "" HGDP00461,HGDP00934,HGDP01397,NINDS_26 nsv817846 19 48253562 48387680 CNV Gain+Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416509,nssv1417680 M 112 1 1 "" NA18517,NA18999 nsv458700 19 48267714 48354926 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535612 S 1557 0 1 "" 1780862310_A nsv817847 19 48267714 48354926 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418523 S 112 1 0 "" NA19192 nsv442768 19 48316884 48335220 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv1095e1 19 48316888 48445318 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv3656,essv1552,essv15908,essv7252,essv6798,essv180,essv5955 M 271 0 0 "" NA18577,NA18594,NA18635,NA18991,NA18994,NA19012,NA19205 nsv833838 19 48319379 48401580 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454737,nssv1454738 M 95 2 0 "" dgv1096e1 19 48319691 48503651 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv19307,essv1077,essv18500,essv25093,essv5893,essv19848,essv9551,essv2139,essv18886,essv13944 M 271 0 0 "" NA07022,NA12156,NA12234,NA12717,NA12814,NA18576,NA18861,NA18978,NA18990,NA19160 nsv458703 19 48321413 48383158 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535615 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00791 nsv437833 19 48326010 48471583 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467714 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18521 essv22369 19 48347697 48590893 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12875 nsv458704 19 48350666 48387680 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535616 S 1557 0 1 "" 1782681262_A nsv437182 19 48350666 48422858 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467063 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA10831 dgv1097e1 19 48350666 48462406 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1332,essv15933,essv8536,essv3624,essv8065,essv6206,essv2910,essv20728,essv22278,essv3841,essv8966,essv1718,essv8543,essv8265,essv12017,essv18529,essv6474,essv10190,essv17375,essv19159,essv14231,essv4531,essv13491,essv20487,essv24623,essv922,essv12868,essv7918,essv19343 M 271 0 0 "" NA06985,NA10846,NA12752,NA12762,NA12763,NA12812,NA12874,NA18502,NA18503,NA18515,NA18516,NA18523,NA18563,NA18566,NA18636,NA18855,NA18913,NA18914,NA18949,NA18953,NA18966,NA18968,NA18973,NA19007,NA19139,NA19141,NA19153,NA19161,NA19209 dgv1098e1 19 48350666 48485993 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv4212,essv21929,essv22027,essv20703,essv21895,essv6856,essv18548,essv23629,essv24212,essv21476,essv17850,essv25152,essv8670,essv24545,essv24174,essv20857,essv21086,essv19725,essv23319,essv18799,essv25132,essv22737,essv20871,essv21945,essv19119,essv25037,essv19067,essv20522,essv19888,essv18056,essv24329,essv24105,essv12940,essv19488,essv24355,essv20545,essv20444,essv19711,essv19371,essv24187,essv2105,essv18022,essv21581,essv22690,essv25075,essv19830,essv25181,essv19029,essv23297,essv16623,essv23105 M 271 0 0 "" NA06991,NA06993,NA06994,NA07000,NA07019,NA07034,NA07048,NA07055,NA07056,NA10830,NA10839,NA10847,NA10854,NA10856,NA10857,NA10859,NA11829,NA11830,NA11831,NA11839,NA11840,NA11881,NA11882,NA11993,NA11995,NA12004,NA12006,NA12043,NA12044,NA12057,NA12144,NA12145,NA12146,NA12236,NA12239,NA12248,NA12264,NA12716,NA12750,NA12751,NA12801,NA12802,NA12815,NA12878,NA12892,NA18558,NA18609,NA18959,NA19101,NA19102,NA19208 nsv458705 19 48354926 48531928 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535617 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00057 nsv817848 19 48354926 48531928 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415797 S 112 0 1 "" NA12875 dgv1099e1 19 48362135 48445318 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1051,essv5868,essv11353,essv17691,essv15154,essv12436,essv9261,essv8034,essv11388,essv15184 M 271 0 0 "" NA10835,NA18504,NA18555,NA18975,NA19103,NA19127,NA19128,NA19137,NA19152,NA19210 dgv1100e1 19 48362135 48511244 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2943,essv22613,essv20741,essv21355,essv20470,essv20971,essv12113,essv1642,essv23749,essv24436,essv8883,essv6090 M 271 0 0 "" NA07357,NA10860,NA10863,NA11994,NA12154,NA12249,NA12865,NA18621,NA18961,NA18972,NA19171,NA19173 dgv1101e1 19 48362435 48435623 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv15961,essv8409,essv18877,essv17986,essv9489,essv8581,essv10604,essv21909,essv617,essv23692,essv14916,essv22790 M 271 0 0 "" NA07029,NA10838,NA12005,NA12740,NA12753,NA18998,NA19093,NA19129,NA19130,NA19142,NA19154,NA19211 nsv471413 19 48363735 48382528 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548212,nssv548209,nssv548210 M 3 "" nsv482043 19 48363735 48382528 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558404 S 1 1 0 "" KB1 esv34676 19 48373067 48511244 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6980393,essv6980392 M 771 0 1 "" NA10831 nsv2499 19 48380975 48458730 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9337 S 9 0 1 "" NA18517 esv33039 19 48381840 48449576 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv94657,essv93986,essv95495,essv93136,essv95913,essv94485,essv92740,essv96087,essv96587,essv96050,essv93539,essv93390,essv95028,essv92640,essv96534,essv99226,essv100220 M 51 17 0 "" 21791,21802,21847,21863,21911,21932,21944,22007,22011,22127,22128,22170,22231,22233,22261,22275,22286 nsv482044 19 48388696 48401630 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558405 S 1 1 0 "" KB1 nsv442769 19 48394873 48448077 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv1102e1 19 48395295 48427094 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv3447,essv11599,essv614,essv16177 M 271 0 0 "" NA18506,NA18947,NA18956,NA19207 dgv1103e1 19 48395295 48445318 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2383,essv1296,essv5775,essv12095,essv7910,essv7482,essv13374,essv7061 M 271 0 0 "" NA18540,NA18561,NA18612,NA18976,NA18980,NA19099,NA19159,NA19239 dgv1104e1 19 48395295 48462406 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv6520,essv4344,essv1562,essv10503,essv8685,essv986 M 271 0 0 "" NA18572,NA18622,NA18912,NA18964,NA18997,NA19143 dgv1105e1 19 48395295 48496602 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv12029,essv11070,essv14811,essv2708,essv7473 M 271 0 0 "" NA18633,NA18870,NA18944,NA19116,NA19138 nsv469787 19 48405048 48578186 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649808 M 265 0 3 Samples from several populations that are part of the HapMap project. "" essv16583 19 48405051 48427094 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18860 essv21588 19 48435623 48562727 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12155 essv23156 19 48445318 48511244 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA10831 nsv471414 19 48449275 48465522 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548215,nssv548213,nssv548214 M 3 "" nsv482045 19 48449275 48465522 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558406 S 1 1 0 "" KB1 essv24618 19 48461673 48501787 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12875 nsv469666 19 48468987 48626174 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649595 M 265 0 0 Samples from several populations that are part of the HapMap project. "" nsv9731 19 48490564 48503771 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26643 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA12155 dgv423n27 19 48498399 48531928 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv458708,nsv458709,nsv458706 M 1557 0 3 "" 1780854095_A,1780854480_A,1788485590_A nsv526966 19 48498835 48562727 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703338 S 2026 0 1 "" nsv2500 19 48511889 48547817 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6791,nssv2230 M 9 2 0 "" NA12156,NA18555 nsv9732 19 48512660 48527653 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26656 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA12155 nsv9733 19 48529507 48535807 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26669 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA12155 nsv520852 19 48576925 48651954 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv684803,nssv676380,nssv686356,nssv698358 M 2026 3 1 "" nsv509744 19 48596284 48672809 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623761 S 4 1 0 "" NA18994 nsv2501 19 48634421 48670264 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7444 S 9 0 1 "" NA12156 nsv2502 19 48662931 48697567 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2999 S 9 1 0 "" NA18555 nsv137943 19 48707634 48707824 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv156521 M 24 "" nsv833839 19 48791653 48964139 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454739 S 95 0 1 "" nsv2503 19 48886912 48919203 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4363 S 9 1 0 "" NA12878 nsv509745 19 48942280 49004487 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623762 S 4 1 0 "" NA18994 nsv458710 19 49031800 49102686 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535622 S 1557 0 1 "" NINDS_222 nsv524460 19 49044528 49063855 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700394 S 2026 0 1 "" nsv2504 19 49077112 49107598 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1455 S 9 1 0 "" NA19240 nsv469650 19 49097834 49247266 CNV Gain Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649578 M 265 15 0 Samples from several populations that are part of the HapMap project. "" nsv510476 19 49123763 49129763 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622287 S 4 0 1 "" NA10860 nsv833840 19 49212460 49407600 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454740 S 95 1 0 "" nsv2505 19 49403409 49437772 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1456 S 9 1 0 "" NA19240 nsv521923 19 49455904 49461814 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694693 S 2026 0 1 "" nsv515911 19 49543974 49626859 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv659425,nssv706114,nssv673184,nssv683320,nssv667681,nssv657396,nssv675197,nssv681643,nssv665270 M 2026 0 9 "" nsv9734 19 49584601 49631863 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25232,nssv27787 M 31 1 1 Samples from several populations that are part of the HapMap project. "" NA18860,NA19007 dgv1106e1 19 49585942 49639284 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv13357,essv16586,esv1355 M 271 0 0 "" NA18860,NA19159 nsv442465 19 49588238 49630631 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv817849 19 49594855 49626859 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416810 S 112 0 1 "" NA19159 nsv523693 19 49647767 49649348 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699500 S 2026 0 1 "" nsv524201 19 49647767 49670023 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700087 S 2026 0 1 "" nsv525472 19 49647767 49670023 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701600 S 2026 1 0 "" nsv507897 19 49655744 49661744 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620641 S 4 1 0 "" NA15510 nsv507898 19 49658038 49664038 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619221 S 4 1 0 "" NA10860 nsv521513 19 49691899 49694403 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698130 S 2026 0 1 "" nsv9736 19 49861247 49865838 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27566 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18517 nsv9737 19 49869950 49898469 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28561 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19221 nsv833841 19 49900326 49999883 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454741 S 95 0 1 "" nsv2506 19 49945103 49989651 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2231 S 9 0 1 "" NA18555 dgv12e24 19 50043310 50044258 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH esv2750526,esv2750571,esv2750480,esv2750491,esv2750495,esv2750613,esv2750617,esv2750681,esv2750687,esv2750725,esv2750758,esv2750768,esv2750664,esv2750556 M 51 14 0 "" 21618,21634,21808,21847,21863,21872,21939,22011,22127,22128,22231,22286,22298,22371 dgv13e24 19 50043310 50044258 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH esv2750647,esv2750568,esv2750590,esv2750740 M 51 0 4 "" 21909,21932,21938,22278 esv2750597 19 50051654 50053314 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv96465 S 51 0 1 "" 22261 nsv509747 19 50073033 50138523 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619751 S 4 1 0 "" NA10860 nsv138296 19 50110835 50113137 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv156874 M 24 "" esv32608 19 50165453 50166427 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99623,essv99268 M 51 0 2 "" 22217,22275 dgv14e24 19 50174559 50175069 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH esv2750527,esv2750692,esv2750585,esv2750517,esv2750626,esv2750674,esv2750476,esv2750487,esv2750529,esv2750540,esv2750545,esv2750550,esv2750562,esv2750596,esv2750619,esv2750648,esv2750666,esv2750701,esv2750705,esv2750733,esv2750771,esv2750505 M 51 0 22 "" 21616,21634,21693,21721,21791,21847,21872,21879,21911,21932,21938,21939,22011,22075,22128,22233,22261,22275,22278,22286,22298,22371 nsv833842 19 50285728 50376148 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454742 S 95 0 1 "" nsv833843 19 50285728 50485522 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454744,nssv1454743,nssv1454748,nssv1454746,nssv1454747,nssv1454745,nssv1454749 M 95 0 7 "" nsv522341 19 50331964 50356058 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695120 S 2026 0 1 "" nsv520051 19 50351976 50356058 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694361 S 2026 0 1 "" esv2422482 19 50368545 50461645 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161521 S 181 1 0 "" ND04274 nsv833844 19 50376149 50579246 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454750 S 95 0 1 "" nsv833845 19 50503912 50652469 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454751 S 95 0 1 "" nsv458711 19 50518206 50603842 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535623 S 1557 1 0 "" NINDS_116 dgv29n64 19 50529109 50568807 CNV Gain Wang_et_al_2007 17921354 SNP_array nsv817850,nsv817852 M 112 3 0 "" NA07357,NA10863,NA12234 nsv442466 19 50542545 50583764 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv515681 19 50547984 50559099 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv664367,nssv686357,nssv675988 M 2026 0 3 "" nsv833846 19 50576103 50664187 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454752 S 95 0 1 "" esv33485 19 50641706 50642298 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97111 S 51 1 0 "" 22075 nsv833848 19 50652470 50840037 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454754,nssv1454753 M 95 0 2 "" nsv523694 19 50710980 50721994 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699501 S 2026 0 1 "" nsv520061 19 50761879 50766057 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697201 S 2026 0 1 "" nsv510770 19 51037007 51116532 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622753 S 4 0 1 "" NA18994 nsv523029 19 51068057 51071487 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698710 S 2026 0 1 "" nsv2507 19 51090682 51125124 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4364 S 9 1 0 "" NA12878 nsv2508 19 51171349 51176350 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9856 S 9 1 0 "" NA18507 nsv519520 19 51252350 51252533 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696898 S 2026 0 1 "" nsv525917 19 51252350 51258501 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702121 S 2026 0 1 "" nsv528826 19 51272994 51315848 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705500 S 2026 1 0 "" nsv2510 19 51284716 51308599 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4365 S 9 0 1 "" NA12878 nsv2511 19 51324988 51360184 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1457 S 9 1 0 "" NA19240 nsv458713 19 51338776 51458819 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535624 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01182 nsv458714 19 51385102 51474446 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535625 S 1557 1 0 "" NINDS_133 nsv528813 19 51486111 51487724 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705487 S 2026 0 1 "" nsv138470 19 51584460 51584511 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv157048 M 24 "" nsv442467 19 51650847 51653422 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv527638 19 51741768 51753357 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704107 S 2026 0 1 "" nsv833849 19 51753928 51898157 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454755 S 95 0 1 "" nsv833850 19 51898382 52062150 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454758,nssv1454757,nssv1454756 M 95 0 3 "" nsv138519 19 52038581 52039656 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv157097 M 24 "" nsv520664 19 52106826 52162376 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703982,nssv673709,nssv679226,nssv682492,nssv674747 M 2026 4 1 "" esv33665 19 52170612 52170998 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101247,essv93949,essv100945,essv94755,essv94079,essv94388,essv93053,essv95395,essv97414,essv101672,essv98984,essv92913,essv96742,essv95950,essv93495,essv94982,essv92623,essv96509,essv99316,essv97673,essv100252,essv100596,essv100358,essv98457,essv96409 M 51 0 25 "" 21618,21634,21693,21791,21802,21808,21863,21872,21879,21909,21938,21939,22011,22127,22128,22231,22233,22261,22275,22278,22286,22298,22300,22352,22371 esv2750638 19 52198852 52199555 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv96020 S 51 1 0 "" 22127 esv33386 19 52210608 52216464 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv94499,essv93394 M 51 2 0 "" 21932,22170 dgv15e24 19 52219854 52221741 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH esv2750482,esv2750741,esv2750756,esv2750752,esv2750522,esv2750512,esv2750486,esv2750504,esv2750535,esv2750554,esv2750565,esv2750569,esv2750570,esv2750584,esv2750587,esv2750615,esv2750639,esv2750652,esv2750668,esv2750680,esv2750685,esv2750688,esv2750698,esv2750704,esv2750708,esv2750717,esv2750726,esv2750729,esv2750734,esv2750764,esv2750765,esv2750721,esv2750559,esv2750769 M 51 34 0 "" 21618,21634,21693,21721,21791,21802,21805,21808,21837,21863,21872,21879,21909,21911,21932,21938,21939,21944,22007,22011,22075,22127,22128,22170,22217,22231,22233,22275,22278,22286,22298,22300,22352,22371 nsv2512 19 52230052 52261959 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10191 S 9 1 0 "" NA18956 nsv833851 19 52253642 52403876 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454760,nssv1454759 M 95 0 2 "" nsv833852 19 52329687 52502931 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454761 S 95 0 1 "" dgv1107e1 19 52549596 52717317 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv8135,essv15045,esv97,essv20062 M 271 0 0 "" NA07048,NA19129,NA19206 nsv9738 19 52551366 52623000 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28562 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19221 nsv516890 19 52569010 52573346 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv661635,nssv686223,nssv697775,nssv654727,nssv677946 M 2026 0 5 "" nsv521341 19 52569010 52616611 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697949 S 2026 1 0 "" nsv517901 19 52569010 52640040 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695310 S 2026 0 1 "" nsv138407 19 52685585 52685638 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv156985 M 24 "" nsv521727 19 52890487 52897537 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694487 S 2026 0 1 "" nsv138164 19 52915040 52915790 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv156742 M 24 "" nsv520703 19 52958342 52961906 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv681139,nssv674369 M 2026 2 0 "" nsv482046 19 52973654 52979751 CNV Loss Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558407 S 1 0 1 "" KB1 nsv520073 19 52973984 53002354 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694362 S 2026 1 0 "" nsv458715 19 52989040 53085854 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535626 S 1557 1 0 "" NINDS_203 nsv523319 19 53063945 53067510 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699061 S 2026 0 1 "" nsv2513 19 53070465 53175116 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1458,nssv6792,nssv4368,nssv10999,nssv2232 M 9 0 5 "" NA12156,NA12878,NA15510,NA18555,NA19240 nsv509748 19 53080869 53154788 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619752,nssv618133,nssv621077 M 4 3 0 "" CHM,NA10860,NA15510 nsv178 19 53086420 53143430 CNV Loss Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv178 S 1 0 1 "" NA15510 nsv9739 19 53096909 55338132 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24410,nssv28564,nssv26285,nssv27580,nssv24920,nssv25658,nssv22150,nssv24486,nssv27592,nssv25570,nssv22339,nssv27572,nssv28565,nssv25680,nssv25226,nssv22180,nssv24865,nssv26735,nssv24347,nssv27564,nssv27584,nssv24867,nssv24384,nssv24842,nssv24373,nssv26249,nssv28563,nssv24090,nssv26971,nssv25251,nssv26682,nssv25240,nssv26267,nssv26694,nssv25265,nssv26981,nssv25593,nssv24117,nssv22369 M 31 2 18 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10863,NA12155,NA12740,NA12802,NA18502,NA18504,NA18537,NA18563,NA18564,NA18572,NA18853,NA18972,NA18975,NA19144,NA19221 nsv2514 19 53104872 53122676 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4366,nssv1459,nssv9556,nssv6793 M 9 4 0 "" NA12156,NA12878,NA18507,NA19240 nsv2515 19 53136688 53174275 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3000,nssv2233,nssv6795,nssv10192,nssv11000,nssv4367,nssv9338,nssv1460,nssv6794,nssv5751 M 9 8 0 "" NA12156,NA12878,NA15510,NA18517,NA18555,NA18956,NA19129,NA19240 nsv180 19 53144775 53174275 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv180 S 1 1 0 "" NA15510 nsv833853 19 53177608 53379386 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454763,nssv1454762,nssv1454765,nssv1454764 M 95 0 4 "" nsv2516 19 53241784 53275738 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7445 S 9 1 0 "" NA12156 nsv2517 19 53287453 53306360 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1461 S 9 1 0 "" NA19240 nsv525109 19 53386161 53394031 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701169 S 2026 0 1 "" nsv523716 19 53394031 53403288 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699529 S 2026 0 1 "" nsv458716 19 53403288 53434199 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535627 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01332 nsv469623 19 53404797 53555305 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649548 M 265 0 1 Samples from several populations that are part of the HapMap project. "" nsv458717 19 53438493 53453236 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535628 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00734 nsv517364 19 53438493 53462379 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv669244,nssv674165,nssv665779,nssv685163,nssv663283,nssv697563,nssv694547,nssv670651,nssv665391,nssv680146,nssv673400,nssv676860,nssv660833,nssv651819,nssv657240,nssv668728,nssv681332,nssv697950,nssv675700,nssv697501,nssv684357,nssv668510,nssv693338,nssv655116 M 2026 21 3 "" nsv833854 19 53445212 53619236 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454768,nssv1454767,nssv1454766 M 95 0 3 "" nsv137963 19 53537359 53537411 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv156541 M 24 "" nsv518578 19 53670137 53705903 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696022 S 2026 0 1 "" nsv817853 19 53705903 53769479 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417729 S 112 0 1 "" NA19003 nsv510882 19 53721976 53772738 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621647 S 4 0 0 "" NA15510 nsv518776 19 53745060 53745118 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694273 S 2026 0 1 "" nsv507899 19 53761148 53767148 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619222 S 4 1 0 "" NA10860 nsv138413 19 53792730 53799405 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv156991 M 24 "" nsv521477 19 53868842 53888898 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698089 S 2026 0 1 "" nsv458719 19 53875517 53894671 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535630 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00748 nsv442468 19 53881228 53897953 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv516677 19 53894671 53902195 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv689720,nssv698023,nssv682574,nssv662274,nssv670099,nssv695842 M 2026 0 6 "" nsv833855 19 53945167 54144850 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454770,nssv1454769,nssv1454771,nssv1454772,nssv1454773,nssv1454774 M 95 0 6 "" nsv833856 19 54042935 54181552 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454780,nssv1454781,nssv1454779,nssv1454778,nssv1454775,nssv1454777,nssv1454776 M 95 0 7 "" nsv138250 19 54098651 54098790 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv156828 M 24 "" nsv833857 19 54109545 54341389 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454782 S 95 0 1 "" nsv518164 19 54116737 54139525 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695585 S 2026 0 1 "" nsv521890 19 54130175 54147966 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694662 S 2026 1 0 "" nsv833859 19 54192078 54368335 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454783,nssv1454786,nssv1454788,nssv1454785,nssv1454787,nssv1454784 M 95 0 6 "" nsv471416 19 54211050 54212159 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548218,nssv548216,nssv548217 M 3 "" nsv138420 19 54221622 54221928 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv156998 M 24 "" nsv520785 19 54245944 54265250 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv691940,nssv675408 M 2026 2 0 "" nsv524235 19 54331814 54353839 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700125 S 2026 1 0 "" dgv52n68 19 54481754 54651200 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH nsv833861,nsv833860 M 95 0 5 "" nsv138000 19 54609744 54609744 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv156578 M 24 "" nsv833862 19 54643858 54765745 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454815,nssv1454811,nssv1454816,nssv1454810,nssv1454797,nssv1454818,nssv1454796,nssv1454809,nssv1454814,nssv1454795,nssv1454794,nssv1454817,nssv1454801,nssv1454808,nssv1454813,nssv1454799,nssv1454800,nssv1454798,nssv1454803,nssv1454802,nssv1454812,nssv1454806,nssv1454807,nssv1454804,nssv1454805 M 95 0 25 "" nsv2518 19 54647342 54660206 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3001 S 9 1 0 "" NA18555 nsv833863 19 54674246 54824785 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454819,nssv1454820 M 95 0 2 "" nsv833864 19 54746859 54928888 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454822,nssv1454823,nssv1454824,nssv1454821 M 95 4 0 "" nsv469715 19 54767613 54925355 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649736 M 265 1 23 Samples from several populations that are part of the HapMap project. "" nsv833865 19 54767614 54925355 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454827,nssv1454826,nssv1454825,nssv1454829,nssv1454828 M 95 1 4 "" nsv817854 19 54813890 54921456 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417699 S 112 1 0 "" NA18999 nsv7308 19 54882709 54888661 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10193 S 9 0 0 "" NA18956 dgv53n68 19 54919462 55138293 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH nsv833866,nsv833867 M 95 0 17 "" nsv524546 19 54981671 54987957 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700497 S 2026 0 1 "" nsv518114 19 54984922 54987957 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695528 S 2026 0 1 "" dgv54n68 19 55043581 55203857 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH nsv833868,nsv833871 M 95 0 3 "" nsv524534 19 55048976 55051858 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700484 S 2026 0 1 "" nsv526372 19 55048976 55072670 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702668 S 2026 0 1 "" nsv524068 19 55048976 55092860 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699936 S 2026 0 1 "" nsv2519 19 55066103 55085537 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7446 S 9 0 1 "" NA12156 nsv138068 19 55070363 55070434 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv156646 M 24 "" nsv458720 19 55110547 55152726 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535631 S 1557 1 0 "" NINDS_67 nsv7309 19 55115479 55166106 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1462,nssv5752 M 9 0 0 "" NA19129,NA19240 esv2751796 19 55190200 55477198 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6987270,essv6985811,essv6985812,essv6985813 M 771 1 0 "" SPC_56 nsv458722 19 55216038 55255711 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535632 S 1557 1 0 "" 1780862432_A nsv469748 19 55228821 55344796 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649769 M 265 5 2 Samples from several populations that are part of the HapMap project. "" dgv1108e1 19 55228822 55344796 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv3278,essv21273,essv675,essv5279,essv5199,essv8448,essv3004,essv17614,essv2620,essv60,essv14855,essv14490,essv18074,essv4455,essv7760,essv2458,essv15841,essv23784,essv10390,essv20428,essv7128,essv23255,essv4052,essv4770,essv12284,essv24049,essv13205,essv22578,essv7164,essv18643,essv8737,essv8195,essv13594,essv895,essv22981,essv21667,essv15772,essv10012,essv1280,essv5391,essv18830,essv6599,essv20801,essv16401,essv4919,essv7273,essv23474,essv9455,essv23659,essv1746,essv24877,essv3482,essv6691,essv11043,essv16992,essv24401,essv6398,essv1837,essv22042,essv19617,essv20053,essv14696,essv20248,essv5154,essv4227,essv15028,essv22917,essv5529,essv14426,essv6159,essv20357,essv14983,essv4631,essv9917,essv6334,essv19407,esv101,essv9254,essv8623,essv16505,essv19284,essv4952,essv20891,essv9349,essv24497,essv4414,essv13880,essv12367,essv23018,essv6918,essv7721,essv16341,essv21040,essv25009,essv19682,essv4718,essv5745,essv11138,essv15358,essv7573,essv19563,essv9776,essv14271,essv9665,essv17893,essv18283,essv18700,essv14623,essv23531,essv6952,essv1458,essv5497,essv3385,essv11875,essv22824,essv23128,essv243,essv14159,essv12579,essv17588,essv10225,essv21463,essv3162,essv767,essv6837,essv2170,essv16247,essv3767,essv23594,essv11925,essv1154,essv20138,essv2251,essv19926,essv8116,essv22181,essv17847 M 271 0 0 "" NA06991,NA06993,NA07000,NA07029,NA07034,NA07048,NA07345,NA07348,NA07357,NA10830,NA10831,NA10838,NA10839,NA10846,NA10855,NA10859,NA10863,NA11840,NA12003,NA12004,NA12006,NA12044,NA12144,NA12145,NA12146,NA12154,NA12155,NA12234,NA12236,NA12248,NA12264,NA12707,NA12717,NA12751,NA12753,NA12760,NA12762,NA12763,NA12801,NA12802,NA12812,NA12813,NA12864,NA12874,NA12891,NA18502,NA18516,NA18522,NA18529,NA18532,NA18537,NA18542,NA18545,NA18547,NA18552,NA18561,NA18563,NA18564,NA18572,NA18573,NA18579,NA18582,NA18592,NA18593,NA18594,NA18603,NA18605,NA18608,NA18609,NA18611,NA18620,NA18621,NA18622,NA18624,NA18632,NA18633,NA18635,NA18637,NA18853,NA18854,NA18862,NA18863,NA18870,NA18913,NA18944,NA18945,NA18948,NA18956,NA18960,NA18961,NA18964,NA18966,NA18972,NA18975,NA18976,NA18981,NA18990,NA18991,NA18992,NA18995,NA18997,NA18999,NA19000,NA19012,NA19092,NA19093,NA19098,NA19099,NA19101,NA19102,NA19116,NA19127,NA19128,NA19129,NA19131,NA19138,NA19139,NA19140,NA19143,NA19144,NA19145,NA19152,NA19159,NA19161,NA19193,NA19194,NA19201,NA19202,NA19206,NA19208,NA19210,NA19211,NA19221,NA19222,NA19223,NA19239 nsv458723 19 55233955 55249688 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535633 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00918 esv33440 19 55250216 55252940 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv95971,essv94930 M 51 0 2 "" 22127,22231 nsv2523 19 55260473 55297519 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2234,nssv10195,nssv5753,nssv1463 M 9 4 0 "" NA18555,NA18956,NA19129,NA19240 nsv2524 19 55264627 55313639 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10194 S 9 0 1 "" NA18956 nsv509749 19 55274016 55337024 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623763,nssv621078 M 4 2 0 "" NA15510,NA18994 nsv2525 19 55309273 55313987 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9339 S 9 1 0 "" NA18517 nsv2526 19 55328405 55350814 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2235,nssv9557,nssv4369,nssv9340,nssv6797,nssv6798,nssv1464 M 9 6 0 "" NA12156,NA12878,NA18507,NA18517,NA18555,NA19240 esv32841 19 55344029 55346308 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv95747 S 51 0 1 "" 21841 nsv2527 19 55362010 55395249 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2236 S 9 1 0 "" NA18555 nsv523948 19 55373590 55549635 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699795 S 2026 1 0 "" nsv2528 19 55445403 55498308 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9558 S 9 0 1 "" NA18507 nsv2529 19 55531721 55563576 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5754 S 9 1 0 "" NA19129 nsv509750 19 55638147 55735426 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619753 S 4 1 0 "" NA10860 nsv2530 19 55748319 55793486 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7447 S 9 0 1 "" NA12156 esv33810 19 55802063 55816357 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv94421,essv95531,essv95788,essv97114,essv95023 M 51 1 4 "" 21808,21847,21911,22075,22231 esv33599 19 55816357 55819582 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97610 S 51 0 1 "" 21616 esv32592 19 55824555 55825906 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93253 S 51 1 0 "" 22170 nsv442469 19 55949062 55957853 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv817855 19 55952801 55955322 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415923,nssv1415924 M 112 2 0 "" NA10861,NA11995 nsv517376 19 55952801 55972568 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv681781,nssv666694,nssv670754,nssv692313,nssv667682,nssv676550,nssv692514,nssv651844,nssv702230,nssv690724,nssv657536,nssv676639 M 2026 0 12 "" dgv203n21 19 55993042 56027755 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv526232,nsv519121 M 2026 0 2 "" nsv516450 19 56012895 56014124 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv668477,nssv679298 M 2026 0 2 "" dgv204n21 19 56012895 56028009 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv524637,nsv523089 M 2026 0 2 "" nsv515608 19 56022744 56028151 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv688635,nssv661493,nssv691261,nssv678773,nssv667898,nssv685909,nssv680670,nssv693312,nssv686448,nssv670818,nssv651898,nssv672469,nssv677593,nssv679799,nssv692297,nssv693463,nssv652533,nssv667845,nssv691769,nssv676551,nssv692492,nssv667445,nssv675409,nssv682845 M 2026 0 24 "" nsv2531 19 56025440 56070409 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7448 S 9 0 1 "" NA12156 nsv524465 19 56051899 56055210 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700399 S 2026 0 1 "" nsv138426 19 56098662 56100237 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv157004 M 24 "" nsv527850 19 56237863 56238454 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704348 S 2026 0 1 "" nsv524556 19 56257787 56263880 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700510 S 2026 1 0 "" nsv520705 19 56265850 56267236 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694050 S 2026 0 1 "" nsv519982 19 56442050 56449939 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv659898,nssv683924,nssv659871 M 2026 0 3 "" nsv518134 19 56442050 56457765 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695551 S 2026 0 1 "" nsv138271 19 56468220 56468530 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv156849 M 24 "" nsv458724 19 56617331 56667535 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535634 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01047 dgv1109e1 19 56683708 56958512 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv17487,essv10047,essv4577,essv7093,essv13598,essv4234,essv13837,essv3197,essv374,essv4800 M 271 0 0 "" NA12762,NA18524,NA18537,NA18603,NA18620,NA18854,NA18971,NA18974,NA19099,NA19127 esv638 19 56683708 57296437 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent + Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 "" nsv469584 19 56693193 56843633 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649698 M 265 0 0 Samples from several populations that are part of the HapMap project. "" esv33175 19 56693910 56702651 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99206 S 51 1 0 "" 22275 dgv1110e1 19 56783548 56958512 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv6589,essv23862,essv7000,essv23869,essv5456 M 271 0 0 "" NA07022,NA12814,NA18612,NA18621,NA18632 nsv9740 19 56788043 56798833 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27794,nssv23915,nssv25257,nssv25290,nssv24399,nssv27600,nssv24945 M 31 6 1 Samples from several populations that are part of the HapMap project. "" NA10839,NA18563,NA18860,NA18942,NA18972,NA18975,NA19007 nsv510771 19 56795529 56845160 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620121,nssv622754 M 4 0 2 "" NA15510,NA18994 nsv2532 19 56800917 56878758 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5755,nssv7449,nssv9559,nssv10196,nssv11001,nssv4370 M 9 0 6 "" NA12156,NA12878,NA15510,NA18507,NA18956,NA19129 nsv181 19 56804935 56854345 CNV Loss Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv181 S 1 0 1 "" NA15510 nsv458725 19 56815361 56847261 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535635 S 1557 0 1 "" NINDS_88 dgv424n27 19 56819556 56822931 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv458728,nsv458732,nsv458730,nsv458726,nsv458731,nsv458727 M 1557 0 6 "" HGDP00456,HGDP00463,HGDP00474,HGDP00478,HGDP00984,HGDP01081 nsv2534 19 56820403 56833648 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2238 S 9 1 0 "" NA18555 nsv9741 19 56824136 56844329 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24503,nssv25754,nssv25639,nssv26746,nssv27654,nssv25382,nssv27608,nssv24477,nssv24995,nssv25276,nssv25776,nssv24451,nssv25070,nssv24970,nssv25045,nssv25616,nssv25357,nssv24143,nssv27646,nssv24425,nssv27801,nssv25332,nssv27443,nssv24529,nssv25897,nssv22210,nssv25876,nssv26757,nssv23942,nssv25020,nssv25732,nssv25662,nssv22399,nssv25307,nssv25406,nssv25282 M 31 0 16 Samples from several populations that are part of the HapMap project. "" NA07029,NA12155,NA12740,NA12802,NA18537,NA18563,NA18564,NA18572,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19173 esv32724 19 56825823 56840373 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101481,essv97534,essv101226,essv93801,essv100974,essv95165,essv94736,essv94113,essv101376,essv95530,essv97367,essv101635,essv95843,essv94599,essv92893,essv92761,essv96614,essv96003,essv93365,essv99742,essv94866,essv92518,essv98061,essv96547,essv99285,essv97652,essv100488,essv100411,essv99504,essv94247 M 51 30 0 "" 21603,21616,21618,21634,21693,21721,21791,21802,21805,21847,21879,21909,21911,21932,21939,21944,22011,22127,22170,22217,22231,22233,22259,22261,22275,22278,22298,22300,22335,22394 nsv442771 19 56834427 56840009 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv1111e1 19 56834443 56856939 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1559,essv6468,essv18046 M 271 0 0 "" NA06993,NA18637,NA18997 nsv510477 19 56867057 56873057 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618449,nssv624206,nssv621464 M 4 0 3 "" CHM,NA15510,NA18994 nsv521396 19 56873207 56873610 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698007 S 2026 0 1 "" nsv523262 19 56873610 56873827 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698996 S 2026 0 1 "" nsv9742 19 56879350 56913554 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25431,nssv27588,nssv27451,nssv28566,nssv24814 M 31 4 1 Samples from several populations that are part of the HapMap project. "" NA18502,NA18552,NA18980,NA19132,NA19221 nsv524403 19 56917579 57048603 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700322 S 2026 1 0 "" nsv458733 19 56917579 57051795 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535642 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00936 dgv143e55 19 56919728 57322747 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv2751799,esv2751798,esv2751797,esv34502,esv34938,esv2751800,esv2751801 M 771 7 0 "" BEC_540,BEC_671,BEC_686,NA10855,NA11832,SPC_195,SPC_88 dgv1112e1 19 56951383 57296437 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv20826,essv18468 M 271 0 0 "" NA10855,NA11832 dgv425n27 19 56979264 57299577 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv458736,nsv458735 M 1557 2 0 "" 1780854257_A,1780862390_A dgv1113e1 19 57037904 57225638 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv20206,essv21274 M 271 0 0 "" NA10855,NA11832 nsv833872 19 57123599 57310836 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454850 S 95 0 1 "" nsv525259 19 57159634 57163376 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701358 S 2026 0 1 "" nsv2535 19 57272718 57317701 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7450 S 9 0 1 "" NA12156 nsv817856 19 57339705 57360509 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418113 S 112 1 0 "" NA11882 nsv518533 19 57402826 57402950 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695976 S 2026 0 1 "" nsv517598 19 57459909 57460244 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv678791,nssv688883,nssv688768,nssv660538,nssv691108,nssv652470,nssv668207,nssv659469,nssv690100 M 2026 0 9 "" nsv833873 19 57480751 57629093 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454851 S 95 1 0 "" nsv458742 19 57500798 57557983 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535645 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01189 nsv2536 19 57561269 57593876 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7451 S 9 0 1 "" NA12156 nsv507900 19 57573542 57579542 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620643,nssv617945 M 4 2 0 "" CHM,NA15510 esv2750580 19 57574242 57577035 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv94825 S 51 0 1 "" 21791 nsv521079 19 57577949 57609438 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697776 S 2026 0 1 "" esv32843 19 57580834 57582921 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93911,essv94099,essv96921,essv97927,essv95682,essv95567,essv98967,essv92932,essv92679,essv93747,essv93562,essv93309,essv94966,essv96478,essv99201,essv99546 M 51 0 15 "" 21634,21802,21817,21837,21841,21938,21939,21944,21972,22128,22170,22231,22261,22275,22335 esv33518 19 57592739 57592999 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93382 S 51 1 0 "" 22170 nsv138393 19 57640782 57640887 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv156971 M 24 "" nsv509751 19 57673196 57673196 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623764 S 4 1 0 "" NA18994 nsv510772 19 57729023 57795282 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620122 S 4 0 1 "" NA15510 nsv833874 19 57749826 57949687 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454852 S 95 0 1 "" nsv458743 19 57757473 57806079 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535646 S 1557 0 1 "" 1780862226_A nsv519070 19 57806079 57807655 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696542 S 2026 0 1 "" nsv527815 19 57806079 57809343 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704310 S 2026 0 1 "" nsv817857 19 57806079 57812371 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417579 S 112 1 0 "" NA18972 nsv522273 19 57807655 57807872 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694151 S 2026 0 1 "" nsv458744 19 57812371 57928143 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535647 S 1557 1 0 "" NINDS_204 nsv509752 19 57842381 58018662 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619754 S 4 1 0 "" NA10860 nsv458745 19 57898994 57966208 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535648 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00928 nsv833875 19 57903147 58083271 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454853,nssv1454854 M 95 0 2 "" nsv521828 19 57924105 57925085 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694602 S 2026 0 1 "" nsv527597 19 57959318 57970794 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704058 S 2026 0 1 "" nsv458746 19 57980685 58049723 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535649 S 1557 1 0 "" NINDS_266 nsv817858 19 57994293 58049723 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416890,nssv1416891 M 112 2 0 "" NA19238,NA19240 nsv458747 19 57994293 58116136 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535650 S 1557 1 0 "" NINDS_240 nsv528436 19 57994434 58065844 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705030 S 2026 0 1 "" dgv1114e1 19 58002524 58037133 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1671,essv1537,esv1032,essv10969,essv3597,essv21105 M 271 0 0 "" NA10854,NA18969,NA18992,NA19012,NA19092 nsv9743 19 58008184 58012105 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26991 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18504 nsv9744 19 58016032 58051085 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26968 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19240 nsv442470 19 58019782 58045481 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv2537 19 58019892 58064406 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4647 S 9 0 1 "" NA19129 dgv18n14 19 58023726 58065844 CNV Gain Cooper et al 2008 18776910 SNP_array nsv433456,nsv433455 M 9 2 0 "" NA18555,NA19240 dgv1115e1 19 58023851 58037133 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv6796,essv2113,essv2730,essv3938 M 271 0 0 "" NA18594,NA18959,NA18965,NA18970 dgv426n27 19 58028179 58036513 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv458748,nsv458749 M 1557 0 2 "" HGDP00998,HGDP01010 nsv817859 19 58028179 58036513 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417497 S 112 1 0 "" NA18965 nsv458750 19 58028179 58041662 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535653 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01019 nsv517570 19 58028179 58049723 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv684277,nssv682880,nssv682600,nssv667725,nssv678509,nssv689216,nssv652398 M 2026 2 5 "" nsv817860 19 58028179 58049723 CNV Gain+Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417597,nssv1418328,nssv1417654 M 112 2 1 "" NA18978,NA18992,NA19092 nsv458752 19 58028179 58075997 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535655 S 1557 0 1 "" 1780854465_A nsv524151 19 58028179 58084899 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700030 S 2026 1 0 "" nsv525329 19 58028179 58084899 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701439 S 2026 0 1 "" nsv519916 19 58033964 58062157 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697123 S 2026 1 0 "" nsv2538 19 58034024 58039352 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1465 S 9 1 0 "" NA19240 dgv1116e1 19 58102271 58344387 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv19552,essv12256,essv13685,essv24883,essv20011,esv660,essv9736 M 271 0 0 "" NA07000,NA07048,NA12864,NA18913,NA19101,NA19119 nsv522421 19 58105637 58124866 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705774 S 2026 0 1 "" nsv2539 19 58119965 58126372 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7452 S 9 0 1 "" NA12156 essv1672 19 58162326 58246052 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18992 nsv9745 19 58168791 58174784 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23969,nssv25315,nssv24555,nssv25485,nssv21695,nssv26768,nssv25407,nssv22459,nssv25301 M 31 9 0 Samples from several populations that are part of the HapMap project. "" NA10839,NA10847,NA12155,NA18564,NA18572,NA18942,NA18975,NA18980,NA19007 esv34546 19 58169921 58201500 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6978255,essv6978256 M 771 0 1 "" NA18992 nsv817861 19 58175844 58197672 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417639 S 112 0 1 "" NA18992 dgv427n27 19 58176902 58244108 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv458753,nsv458754 M 1557 2 0 "" 1780862212_A,HGDP00572 nsv515506 19 58206416 58244108 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv676585,nssv670286,nssv653366,nssv688838,nssv661105,nssv702012,nssv692648,nssv678510,nssv672704,nssv685246 M 2026 9 1 "" nsv528740 19 58206416 58246520 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705397 S 2026 1 0 "" dgv428n27 19 58206499 58246520 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv458756,nsv458755,nsv458757 M 1557 3 0 "" HGDP00580,HGDP00587,HGDP00734 nsv9747 19 58208997 58246838 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27459,nssv25918,nssv25417,nssv24436,nssv26779,nssv27574,nssv25508,nssv27001,nssv27596,nssv24839,nssv22240,nssv25432,nssv24641,nssv26978,nssv27662,nssv24512,nssv22151,nssv24169,nssv21725,nssv27808,nssv25684,nssv28567,nssv24026,nssv26302,nssv24922,nssv22489,nssv25340,nssv25326,nssv25798,nssv25095 M 31 0 30 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10847,NA10863,NA11830,NA12155,NA12740,NA12802,NA12872,NA18502,NA18504,NA18517,NA18537,NA18552,NA18563,NA18564,NA18572,NA18853,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19144,NA19173,NA19221,NA19240 nsv442772 19 58210563 58244245 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" esv32872 19 58210665 58245897 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97589,essv101401,essv101760,essv99014,essv96089,essv93463,essv97632,essv99438,essv96297,essv94211 M 51 10 0 "" 21616,21805,21909,21938,22007,22128,22278,22335,22371,22394 dgv30n64 19 58224973 58244108 CNV Gain Wang_et_al_2007 17921354 SNP_array nsv817864,nsv817863 M 112 11 0 "" NA10851,NA10859,NA10863,NA11881,NA12044,NA12056,NA12234,NA12248,NA12249,NA12801,NA12812 nsv2540 19 58239047 58253671 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7453 S 9 0 1 "" NA12156 nsv9748 19 58291348 58294829 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28568 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19221 nsv527053 19 58292657 58317924 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703429 S 2026 1 0 "" dgv429n27 19 58292657 58319589 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv458758,nsv458760 M 1557 2 0 "" 1798860292_A,HGDP00214 nsv515862 19 58294765 58318325 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701180,nssv665055,nssv683687 M 2026 1 2 "" dgv430n27 19 58373854 58397366 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv458766,nsv458761,nsv458765,nsv458764,nsv458763 M 1557 5 0 "" HGDP01066,HGDP01073,HGDP01075,NINDS_201,NINDS_233 nsv817865 19 58484854 58490757 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418117 S 112 1 0 "" NA11882 nsv458767 19 58564240 58640198 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535669 S 1557 0 1 "" 1780846029_A nsv521988 19 58567920 58640198 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694755 S 2026 0 1 "" nsv527524 19 58569346 58585150 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703979 S 2026 0 1 "" nsv817866 19 58591685 58626449 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418118 S 112 1 0 "" NA11882 nsv515728 19 58591685 58705990 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv674634,nssv668424,nssv687446,nssv664595,nssv684216,nssv669801,nssv698698,nssv682372,nssv681432 M 2026 8 1 "" nsv9749 19 58599853 58602833 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27467 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19132 nsv458768 19 58602330 58638832 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535670 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01216 essv5683 19 58604054 58651380 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18605 dgv1117e1 19 58604054 58696751 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv8268,esv1263 M 271 0 0 "" NA19153 dgv431n27 19 58624107 58714537 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv458771,nsv458776,nsv458775,nsv458772,nsv458769,nsv458778,nsv458770,nsv458777 M 1557 8 0 "" 1780854480_A,1780854540_A,HGDP00674,HGDP00699,HGDP00711,HGDP00783,HGDP01163,HGDP01367 nsv458779 19 58662393 58704092 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535681 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00205 nsv523944 19 58769368 58799498 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699791 S 2026 0 1 "" nsv515586 19 58830971 58839857 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv664005,nssv685843 M 2026 0 2 "" nsv458781 19 58869085 58995524 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535682 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01238 nsv524891 19 58986294 58988606 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700897 S 2026 0 1 "" nsv519727 19 58988000 58988606 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv678433,nssv657935,nssv661562,nssv685598,nssv684804,nssv672314,nssv676148,nssv694011 M 2026 0 8 "" nsv833876 19 59041022 59190183 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454858,nssv1454856,nssv1454857,nssv1454855,nssv1454859 M 95 0 5 "" nsv518546 19 59049576 59059409 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695989 S 2026 0 1 "" nsv2541 19 59096830 59141655 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5756,nssv7454 M 9 0 2 "" NA12156,NA19129 nsv833877 19 59146595 59312515 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454860 S 95 0 1 "" nsv458782 19 59156210 59288431 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535683 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00080 dgv205n21 19 59211572 59216837 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv522633,nsv527223 M 2026 0 2 "" nsv510773 19 59212246 59327479 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620123 S 4 0 1 "" NA15510 nsv9750 19 59244993 59253694 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27670,nssv24864,nssv25736,nssv26790,nssv26319,nssv22270,nssv22519,nssv25486,nssv24667,nssv24538,nssv25531,nssv27041,nssv21785,nssv25351,nssv25120,nssv24947,nssv27582,nssv25365,nssv27815 M 31 19 0 Samples from several populations that are part of the HapMap project. "" NA07048,NA10839,NA10847,NA12155,NA12802,NA18504,NA18517,NA18537,NA18552,NA18563,NA18564,NA18572,NA18853,NA18860,NA18972,NA18975,NA18980,NA19007,NA19144 nsv182 19 59245803 59293019 CNV Loss Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv182 S 1 0 1 "" NA15510 nsv2542 19 59245803 59293019 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv11002 S 9 0 1 "" NA15510 nsv138275 19 59285037 59285299 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv156853 M 24 "" nsv515623 19 59298021 59374679 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv655362,nssv664142,nssv672240 M 2026 0 3 "" nsv2543 19 59313802 59316099 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4372 S 9 1 0 "" NA12878 nsv2545 19 59318140 59338155 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6799 S 9 1 0 "" NA12156 nsv510774 19 59353561 59465177 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620124 S 4 0 1 "" NA15510 nsv9751 19 59354435 59389195 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27604,nssv28569 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA18502,NA19221 dgv1118e1 19 59359391 59475333 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv10052,essv9686,essv5674,essv17533,essv9088,essv11592,essv13928,essv17304,essv19564,essv17125,essv16784,essv21186,essv14718,essv16298,essv11795 M 271 0 0 "" NA11830,NA12762,NA12864,NA18504,NA18605,NA18854,NA18856,NA18872,NA18913,NA19099,NA19132,NA19159,NA19161,NA19171,NA19173 dgv1119e1 19 59359391 60158136 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv19951,essv10126,esv698,essv16929,essv23809,essv24879 M 271 0 0 "" NA07000,NA12763,NA12813,NA19130,NA19144 nsv2546 19 59378308 59466337 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4373,nssv11003,nssv9341 M 9 0 3 "" NA12878,NA15510,NA18517 nsv458783 19 59391198 59440823 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535684 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00780 dgv1120e1 19 59398234 59457974 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv620,essv8549 M 271 0 0 "" NA18503,NA18998 dgv1121e1 19 59398234 59491567 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv14217,essv12003,essv8498,essv16592,essv8026,essv22806 M 271 0 0 "" NA12753,NA18854,NA18860,NA18871,NA18913,NA19141 dgv1122e1 19 59399676 59445355 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1534,essv19075,essv12061,essv17373 M 271 0 0 "" NA11830,NA18517,NA19012,NA19238 dgv432n27 19 59401089 59435029 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv458786,nsv458784 M 1557 0 2 "" HGDP00045,HGDP01309 nsv183 19 59408310 59460933 CNV Loss Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv183 S 1 0 1 "" NA15510 nsv517129 19 59409113 59442877 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv664982,nssv667573,nssv689578,nssv671938,nssv669034,nssv654402,nssv662045,nssv693166,nssv666436,nssv673673,nssv680042,nssv656335,nssv658253,nssv658674,nssv693663,nssv682402,nssv679048,nssv653172,nssv667945,nssv666824,nssv676325,nssv659336,nssv696766,nssv683593,nssv672705,nssv660372,nssv692708,nssv668879,nssv656782,nssv669623,nssv668352,nssv656823,nssv686738,nssv661275,nssv675728,nssv668551,nssv653823,nssv690776,nssv660711,nssv673901,nssv657788,nssv681970,nssv691626,nssv682655,nssv675562,nssv683449,nssv655148,nssv659872,nssv687868,nssv663127,nssv670912,nssv652383,nssv653608,nssv654955,nssv661167,nssv656973,nssv660016,nssv658717,nssv681506,nssv663149,nssv683648,nssv680083,nssv674562,nssv680348,nssv690101,nssv671294,nssv654100,nssv659398,nssv675524,nssv665444,nssv670204,nssv673401,nssv678008,nssv676381,nssv662100,nssv652897,nssv680647,nssv693228,nssv675965,nssv684278,nssv681577,nssv659835,nssv656118,nssv651744,nssv674308,nssv669529,nssv654932,nssv698043,nssv675058,nssv676215,nssv678220,nssv686553,nssv692649,nssv666344,nssv670164,nssv681254,nssv664033,nssv668174,nssv669274,nssv668829,nssv676744,nssv663702,nssv654006,nssv666394,nssv659223,nssv684358,nssv657989,nssv659938,nssv685181,nssv685372,nssv683949,nssv683020,nssv653159 M 2026 30 83 "" nsv2547 19 59411385 59423104 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6800,nssv5757 M 9 2 0 "" NA12156,NA19129 nsv9752 19 59414575 59440302 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25472,nssv24693,nssv27071,nssv27642,nssv24624,nssv27598,nssv28601,nssv22181,nssv27852,nssv21815,nssv25990,nssv28570,nssv27051,nssv27061,nssv24972,nssv25939,nssv25390,nssv25376,nssv26010,nssv25554,nssv27590,nssv27475 M 31 10 6 Samples from several populations that are part of the HapMap project. "" NA07048,NA10839,NA10847,NA11830,NA12872,NA18502,NA18504,NA18517,NA18564,NA18853,NA18860,NA18975,NA18980,NA19132,NA19173,NA19221 dgv1123e1 19 59416447 59435029 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv8011,essv22274,essv12919,essv15934,essv3616,essv1335,essv6490,essv11357,essv24119,essv19798,essv13397,essv12881 M 271 0 0 "" NA07048,NA12762,NA12864,NA18502,NA18515,NA18636,NA18858,NA18872,NA18966,NA18973,NA19094,NA19221 dgv1124e1 19 59416447 59446197 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv8577,essv22721,essv741,essv13955,essv10961,essv1291,essv18495,essv11056,essv14934,essv5881,essv12079,essv20748,essv13362,essv25173,essv12105,essv14821,essv7472,essv2715,essv8062,essv12910 M 271 0 0 "" NA07357,NA11840,NA12156,NA12239,NA18522,NA18562,NA18633,NA18870,NA18944,NA18980,NA19003,NA19092,NA19099,NA19130,NA19132,NA19138,NA19159,NA19160,NA19161,NA19173 dgv1125e1 19 59416447 59473655 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1044,essv13293,essv24166,essv2119,essv18523,essv9309,essv20875,essv13265,essv990 M 271 0 0 "" NA12145,NA12751,NA12763,NA18852,NA18959,NA18964,NA18975,NA19201,NA19202 esv32835 19 59421840 59435034 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101575,essv97526,essv101158,essv93802,essv96851,essv100933,essv95133,essv94696,essv93988,essv101294,essv94464,essv97000,essv97934,essv95640,essv95498,essv93068,essv95409,essv97433,essv101777,essv95787,essv94537,essv98972,essv92901,essv92821,essv93629,essv96219,essv96694,essv97132,essv98601,essv96044,essv93560,essv93398,essv99699,essv95035,essv92540,essv98046,essv96549,essv99334,essv97740,essv100142,essv100521,essv100399,essv99432,essv98430,essv96386,essv94288 M 51 46 0 "" 21603,21616,21618,21634,21659,21693,21721,21791,21802,21805,21808,21817,21837,21841,21847,21863,21872,21879,21909,21911,21932,21938,21939,21944,21972,22007,22011,22075,22085,22127,22128,22170,22217,22231,22233,22259,22261,22275,22278,22286,22298,22300,22335,22352,22371,22394 nsv442773 19 59422012 59433131 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv817867 19 59423491 59428132 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416613,nssv1416294,nssv1416305,nssv1418235,nssv1415604,nssv1417078,nssv1416206,nssv1416813,nssv1418236,nssv1418234,nssv1415603,nssv1416208,nssv1416207,nssv1416812 M 112 14 0 "" NA07000,NA10830,NA12154,NA12878,NA12891,NA12892,NA19140,NA19142,NA19143,NA19144,NA19145,NA19159,NA19161,NA19172 dgv433n27 19 59423491 59435029 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv458787,nsv458789,nsv458788 M 1557 0 3 "" 1780862584_A,HGDP00472,HGDP01419 nsv433320 19 59423491 59435029 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463201 S 9 0 1 "" NA15510 nsv817868 19 59423491 59435029 CNV Gain+Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416412,nssv1417951,nssv1416694,nssv1416893,nssv1417730,nssv1418417,nssv1416510,nssv1416811,nssv1417950,nssv1416614,nssv1416696,nssv1416283,nssv1418415,nssv1417700,nssv1416892,nssv1416612,nssv1416511,nssv1416411,nssv1417949,nssv1418416 M 112 13 7 "" NA10847,NA12146,NA12239,NA18515,NA18517,NA18852,NA18853,NA18854,NA18856,NA18857,NA18999,NA19003,NA19119,NA19120,NA19141,NA19160,NA19171,NA19173,NA19238,NA19239 nsv433322 19 59423491 59440823 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463203 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA18517 nsv817869 19 59423491 59442877 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418330,nssv1418329 M 112 0 2 "" NA19092,NA19094 dgv434n27 19 59423491 59454220 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv458791,nsv458792,nsv458790 M 1557 3 0 "" 1780854264_A,HGDP00206,NINDS_73 nsv817870 19 59423491 59455781 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418119 S 112 1 0 "" NA11882 nsv2548 19 59435067 59456844 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4374,nssv5758 M 9 2 0 "" NA12878,NA19129 nsv528370 19 59442877 59480568 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704957 S 2026 0 1 "" nsv833878 19 59464633 59721885 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454862,nssv1454861,nssv1454863 M 95 0 3 "" nsv9753 19 59465127 59471780 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25758 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18537 nsv442471 19 59477769 59491563 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv527908 19 59481078 59588689 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704414 S 2026 1 0 "" nsv2549 19 59483883 59509050 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6801,nssv2239,nssv10197 M 9 0 3 "" NA12156,NA18555,NA18956 esv33839 19 59491525 59497078 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101469,essv97497,essv100958,essv95064,essv98330,essv94461,essv101634,essv96152,essv97195,essv93396,essv100202,essv100542,essv96266 M 51 0 13 "" 21603,21616,21693,21721,21772,21808,21909,22007,22075,22170,22286,22298,22371 nsv9754 19 59491568 59501953 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26801,nssv26336,nssv25415,nssv26988,nssv27650,nssv25495,nssv24650,nssv27081,nssv28602,nssv24195,nssv27859,nssv27483,nssv27606,nssv22211 M 31 14 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA11830,NA12155,NA12872,NA18502,NA18504,NA18517,NA18860,NA19132,NA19144,NA19221,NA19240 nsv510775 19 59492127 59512849 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622756 S 4 0 1 "" NA18994 nsv9755 19 59584932 59591675 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25780 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18537 nsv2550 19 59606665 59619628 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4375,nssv6802 M 9 2 0 "" NA12156,NA12878 nsv9756 19 59616540 59634757 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27658,nssv28603 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA18502,NA19221 nsv2551 19 59628953 59642119 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10198 S 9 1 0 "" NA18956 nsv9758 19 59651609 59653424 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26998 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19240 nsv137938 19 59693507 59693572 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv156516 M 24 "" nsv138515 19 59693657 59693908 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv157093 M 24 "" nsv138300 19 59717591 59726858 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv156878 M 24 "" nsv522872 19 59721995 59840299 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698527 S 2026 0 1 "" dgv435n27 19 59721995 59848854 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv458795,nsv458798,nsv458797 M 1557 0 3 "" HGDP00388,HGDP00957,HGDP01242 nsv518262 19 59729127 59738299 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695693 S 2026 1 0 "" dgv16e196 19 59778542 59950557 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array esv2422228,esv2422385 M 181 1 0 "" ND05027 dgv17e196 19 59779270 59936708 CNV Deletion Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array esv2422234,esv2422470,esv2422364 M 181 0 3 "" ND01666,ND03403,ND05165 nsv9759 19 59790016 59793368 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22300 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA12802 dgv1126e1 19 59799647 60158136 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv10754,essv4568,essv3168,essv21113,essv23688,essv4391,essv24494,essv16442,essv21059,essv7298,essv5506,essv7759,essv2072,essv17444 M 271 0 0 "" NA06991,NA10863,NA12043,NA12802,NA12815,NA18523,NA18524,NA18542,NA18573,NA18592,NA18632,NA18949,NA19012,NA19139 nsv516569 19 59803539 59855149 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698489,nssv702424,nssv679756,nssv698613,nssv669245 M 2026 2 3 "" nsv458799 19 59821717 59869741 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535698 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01229 nsv9760 19 59839753 59870894 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25802 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18537 nsv523723 19 59840299 59869952 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699538 S 2026 0 1 "" nsv817871 19 59840299 59869952 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417112 S 112 0 1 "" NA18537 essv4924 19 59850663 59886999 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18537 esv2422341 19 59857960 59880396 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161236 S 181 1 0 "" ND03746 nsv518953 19 59865354 59875226 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696421 S 2026 0 1 "" nsv833879 19 59865879 60069408 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454866,nssv1454865,nssv1454864 M 95 1 2 "" nsv524470 19 59866025 59875226 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700408 S 2026 1 0 "" dgv1127e1 19 59878067 60158136 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv15604,essv10400,essv9953 M 271 0 0 "" NA19137,NA19204,NA19222 esv32713 19 59879758 59885221 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97542 S 51 0 1 "" 21616 dgv1128e1 19 59906801 60085534 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv12072,essv8567,essv15968,essv10495,essv17222,essv13494 M 271 0 0 "" NA18857,NA18914,NA19130,NA19142,NA19143,NA19238 nsv469656 19 59909221 60083800 CNV Gain Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649584 M 265 0 13 Samples from several populations that are part of the HapMap project. "" nsv471706 19 59909222 60083800 CNV Loss Sharp et al 2005 15918152 BAC_aCGH,FISH Eichler Segmental Duplication BAC array nssv549907,nssv549898,nssv549901,nssv549902,nssv549905,nssv549897,nssv549900,nssv549903,nssv549899,nssv549906,nssv549904 M 48 0 11 "" JK1051,JK1058,JK1061,NA10471,NA10492,NA10970,NA11523,NA11776,NA15726,NA15732,NA17017 nsv437834 19 59916697 60065174 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467715 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18521 nsv517143 19 59917647 60069820 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv652769,nssv666101,nssv688884,nssv687724,nssv684316,nssv675171,nssv666153,nssv667467,nssv658125,nssv686161,nssv671228,nssv673788,nssv673027,nssv666128,nssv685814,nssv658431,nssv674805,nssv688996,nssv655505,nssv665824,nssv692148,nssv687937,nssv696232,nssv692992,nssv680912,nssv681121,nssv669868,nssv672283,nssv687694,nssv688839,nssv665801,nssv684528,nssv660289,nssv688591,nssv664898,nssv656231,nssv680744,nssv688188,nssv674905,nssv654933,nssv660333,nssv659820,nssv653860,nssv675468,nssv690833,nssv663731,nssv691671,nssv652899,nssv660591,nssv693435,nssv658718,nssv671967,nssv663398,nssv676660,nssv677656,nssv669378,nssv666458,nssv689457,nssv674342,nssv692378,nssv692001,nssv681971,nssv662697,nssv656459,nssv683450,nssv662146,nssv688139,nssv667899,nssv672677,nssv678572,nssv685844,nssv658455,nssv659853,nssv669671,nssv680884,nssv673537,nssv658284,nssv683051,nssv661607,nssv681766,nssv651845,nssv675198,nssv675602,nssv678242,nssv680858,nssv668942,nssv661168,nssv682943,nssv681282,nssv673109,nssv680170,nssv674606,nssv693167,nssv682731,nssv654051,nssv687327,nssv690325,nssv669452,nssv659452,nssv684995,nssv655448,nssv686952,nssv670239,nssv680772,nssv678792,nssv656141,nssv653954,nssv678072,nssv677275,nssv686384,nssv670961,nssv676468,nssv685457,nssv657741,nssv660958,nssv674720,nssv673507,nssv664851,nssv692544,nssv671295,nssv692314,nssv692515,nssv687069,nssv660453,nssv669012,nssv692059,nssv687107,nssv682983,nssv663890,nssv671939,nssv653901,nssv675793,nssv662492,nssv686872,nssv692673,nssv659986,nssv672706,nssv667401 M 2026 23 115 "" nsv9761 19 59939167 60028176 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27008,nssv27866,nssv25518,nssv27048,nssv26030,nssv27058,nssv25824,nssv26353,nssv22330 M 31 2 5 Samples from several populations that are part of the HapMap project. "" NA11830,NA12802,NA18537,NA18860,NA19144,NA19173,NA19240 esv32828 19 59939799 60043746 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv92732,essv98113 M 51 0 2 "" 21944,22259 dgv1129e1 19 59939919 60049236 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv7987,essv4938,essv5424,essv20983,essv23308,essv6095,essv16562,essv8996,essv11468,essv4207,essv6444,essv8691,essv8964 M 271 0 0 "" NA10863,NA12264,NA18537,NA18542,NA18573,NA18592,NA18609,NA18856,NA18912,NA19139,NA19193,NA19194,NA19240 dgv144e55 19 59939919 60074863 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv2751802,esv2751804,esv2751803 M 771 3 0 "" BEC_5,BEC_505,BEC_625 essv8523 19 59940064 59971780 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18523 essv19144 19 59940064 59993623 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12812 dgv145e55 19 59942897 60049236 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv2751806,esv2751805 M 771 0 2 "" BEC_792,SPC_184 essv14850 19 59946625 60018425 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19119 essv15906 19 59971717 60018425 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19205 dgv1130e1 19 59971717 60049236 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv9496,essv12020,essv12894,essv11338,essv924 M 271 0 0 "" NA18521,NA18522,NA18949,NA19128,NA19141 nsv138103 19 59972799 59972799 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv156681 M 24 "" nsv442774 19 59989695 60018421 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" essv9282 19 59991881 60007809 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19137 dgv436n27 19 59993623 60018551 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv458806,nsv458809,nsv458803 M 1557 3 0 "" NINDS_197,NINDS_246,NINDS_84 dgv437n27 19 59993623 60018551 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv458801,nsv458805,nsv458802,nsv458808,nsv458804 M 1557 0 5 "" NINDS_158,NINDS_196,NINDS_218,NINDS_224,NINDS_39 nsv817872 19 59993623 60018551 CNV Gain+Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417331,nssv1417152,nssv1416984,nssv1416697,nssv1416897,nssv1416316,nssv1418238,nssv1416327,nssv1416896,nssv1416982,nssv1418524,nssv1417391,nssv1416413,nssv1416414,nssv1417113,nssv1418526 M 112 2 14 "" NA18537,NA18542,NA18609,NA18856,NA18857,NA18949,NA19119,NA19137,NA19139,NA19141,NA19142,NA19143,NA19193,NA19194,NA19238,NA19240 nsv458810 19 59993623 60069820 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535708 S 1557 0 1 "" NINDS_159 dgv438n27 19 59993623 60084567 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv458811,nsv458826 M 1557 2 0 "" NINDS_114,NINDS_237 dgv439n27 19 60014787 60018551 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv458831,nsv458830,nsv458832 M 1557 0 3 "" HGDP00554,HGDP00857,HGDP00913 nsv9762 19 60025232 60040336 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22360 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA12802 nsv471417 19 60035986 60051835 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548219,nssv548220,nssv548221 M 3 "" nsv138073 19 60036607 60036798 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv156651 M 24 "" nsv9763 19 60039278 60046008 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25845 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18537 nsv9764 19 60043738 60052858 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22390,nssv24462 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA10863,NA12802 esv32688 19 60043739 60071782 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97889,essv93006,essv93647,essv96084,essv93520,essv93244 M 51 0 6 "" 21837,21863,21972,22007,22128,22170 nsv9765 19 60058682 60069725 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22450 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA12802 nsv520644 19 60092982 60143609 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697534 S 2026 0 1 "" nsv833880 19 60093130 60270523 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454867 S 95 0 1 "" nsv9766 19 60146836 60152724 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24221 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA07029 nsv9767 19 60165407 60174941 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27068,nssv24488,nssv27873,nssv25509,nssv26812 M 31 5 0 Samples from several populations that are part of the HapMap project. "" NA10863,NA12155,NA18860,NA19007,NA19240 dgv1131e1 19 60229274 60342499 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv7671,esv1257 M 271 0 0 "" NA18620 esv34356 19 60229274 60342499 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6986929,essv6979734,essv6990402 M 771 1 0 "" NA18620 nsv9770 19 60252536 60257158 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27091 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18504 nsv817874 19 60270514 60306735 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417506 S 112 0 1 "" NA18968 nsv817875 19 60273323 60293927 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417281 S 112 0 1 "" NA18608 nsv138118 19 60281802 60282023 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv156696 M 24 "" nsv138336 19 60300690 60300824 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv156914 M 24 "" nsv516199 19 60546125 60592911 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv668103,nssv682326,nssv684598,nssv666755,nssv677657,nssv697438,nssv669275,nssv694980,nssv682959 M 2026 0 9 "" nsv458833 19 60669721 60724900 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535716 S 1557 0 1 "" NINDS_69 nsv2552 19 60670258 60701897 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5759 S 9 1 0 "" NA19129 nsv138517 19 60711818 60711965 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv157095 M 24 "" nsv138153 19 60733624 60733959 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv156731 M 24 "" nsv2553 19 60829367 60862026 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5760 S 9 1 0 "" NA19129 nsv833882 19 60850445 61018376 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454869,nssv1454868 M 95 0 2 "" nsv522559 19 60877062 60882627 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705942 S 2026 0 1 "" nsv2554 19 60896809 60930970 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3003 S 9 1 0 "" NA18555 nsv510927 19 60910065 61123638 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624356 S 4 0 0 "" NA18994 dgv1132e1 19 60927349 61018118 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv3578,esv1131 M 271 0 0 "" NA18987 nsv9771 19 60937613 60940358 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27101 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18504 nsv509753 19 60942129 61002190 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619755 S 4 1 0 "" NA10860 nsv2556 19 60948980 61003018 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2240,nssv10199,nssv6803,nssv9857,nssv10200 M 9 4 0 "" NA12156,NA18507,NA18555,NA18956 nsv9772 19 60951331 60980499 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22241,nssv27491,nssv24919,nssv24997,nssv25532,nssv21845,nssv24676,nssv25820,nssv25541,nssv22549,nssv26050,nssv27078,nssv27678,nssv25401,nssv27880,nssv26823,nssv25866,nssv26369,nssv25145,nssv25470,nssv24053,nssv28604,nssv27644,nssv24719 M 31 0 24 Samples from several populations that are part of the HapMap project. "" NA07048,NA10839,NA10847,NA11830,NA12155,NA12740,NA12872,NA18517,NA18537,NA18552,NA18563,NA18564,NA18572,NA18853,NA18860,NA18942,NA18972,NA18975,NA19007,NA19132,NA19144,NA19173,NA19221,NA19240 dgv1133e1 19 60957621 60988304 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2749,essv3510,essv1687,essv600,essv8898,essv5948,essv3243 M 271 0 0 "" NA18577,NA18947,NA18965,NA18967,NA18992,NA18999,NA19171 essv183 19 60957621 61015021 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18994 dgv1134e1 19 60959616 60974624 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv5872,essv7498,essv1703 M 271 0 0 "" NA18561,NA18562,NA18968 nsv442473 19 60959856 60969865 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv482047 19 60962319 60966351 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558408 S 1 1 0 "" KB1 nsv526248 19 60996419 60998214 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702520 S 2026 0 1 "" nsv525923 19 60998008 60998151 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702127 S 2026 0 1 "" nsv138082 19 61053170 61053289 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv156660 M 24 "" nsv507901 19 61070827 61076827 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617946,nssv619223,nssv620644 M 4 3 0 "" CHM,NA10860,NA15510 nsv833883 19 61204413 61331901 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454870,nssv1454871 M 95 0 2 "" nsv2557 19 61224115 61239819 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7455 S 9 0 1 "" NA12156 dgv206n21 19 61229340 61398860 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv528998,nsv523651 M 2026 0 2 "" dgv207n21 19 61284098 61378765 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv521744,nsv517365 M 2026 0 17 "" nsv528361 19 61330657 61380382 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704948 S 2026 0 1 "" nsv442474 19 61405760 61414571 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv526325 19 61432998 61543847 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702614 S 2026 0 1 "" nsv521243 19 61434487 61444704 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694012,nssv688140 M 2026 0 2 "" nsv528817 19 61470853 61477220 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705491 S 2026 0 1 "" nsv138350 19 61542414 61542685 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv156928 M 24 "" nsv442475 19 61551396 61556644 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv524734 19 61753885 61755452 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700725 S 2026 0 1 "" nsv138064 19 61855309 61861853 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv156642 M 24 "" nsv517449 19 61890337 61906985 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv678073,nssv662046,nssv685711,nssv684692,nssv675023,nssv652048,nssv664852,nssv658254,nssv702088,nssv659197,nssv679081,nssv663243,nssv684164 M 2026 0 13 "" nsv137982 19 61891568 61891625 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv156560 M 24 "" nsv458835 19 61894736 61902598 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535717 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00151 nsv442476 19 61896070 61903319 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv833884 19 61907423 62089065 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454872 S 95 0 1 "" nsv509754 19 61907544 61964684 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623765 S 4 1 0 "" NA18994 nsv138047 19 61975840 61976036 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv156625 M 24 "" nsv138335 19 62112288 62112288 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv156913 M 24 "" nsv509755 19 62114247 62171736 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623766 S 4 1 0 "" NA18994 nsv2558 19 62142215 62158577 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1466 S 9 1 0 "" NA19240 nsv138520 19 62150211 62150266 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv157098 M 24 "" nsv442477 19 62165323 62171290 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv509756 19 62234401 62289840 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623767 S 4 1 0 "" NA18994 nsv528378 19 62338030 62341712 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704966 S 2026 0 1 "" nsv817876 19 62338030 62357562 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418120 S 112 1 0 "" NA11882 nsv817877 19 62547742 62552897 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418121 S 112 1 0 "" NA11882 nsv9773 19 62680661 62689885 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24944 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18552 dgv1135e1 19 62684998 62694776 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv5969,esv1120 M 271 0 0 "" NA18552 nsv522762 19 62695392 62727457 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698401 S 2026 0 1 "" nsv525323 19 62699597 62703233 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701433 S 2026 0 1 "" nsv526203 19 62727457 62727577 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702466 S 2026 0 1 "" nsv516393 19 62940924 62941116 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv687751,nssv672075,nssv668010 M 2026 0 3 "" nsv520155 19 62973186 63022824 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv661276,nssv676862,nssv695605 M 2026 0 3 "" nsv7311 19 62998882 63084614 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2241,nssv6804 M 9 0 0 "" NA12156,NA18555 nsv525611 19 63160968 63162333 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701756 S 2026 0 1 "" nsv833885 19 63182936 63368540 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454875,nssv1454874,nssv1454873,nssv1454877,nssv1454878,nssv1454881,nssv1454876,nssv1454880,nssv1454879 M 95 0 9 "" nsv516650 19 63183439 63186871 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv669887,nssv657789 M 2026 0 2 "" nsv458836 19 63261443 63308486 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535718 S 1557 1 0 "" 1780862014_A nsv833886 19 63312933 63536034 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454882 S 95 1 0 "" nsv833887 19 63465828 63637003 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454883 S 95 0 1 "" nsv515731 19 63523631 63779291 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv691832,nssv662644,nssv703816,nssv665392,nssv692969,nssv679778,nssv655363,nssv674681,nssv695240,nssv673563,nssv679620,nssv676687,nssv684829,nssv689458,nssv697402,nssv674776,nssv677947,nssv673995,nssv684359,nssv701043,nssv665207,nssv665586,nssv693569,nssv670715,nssv664611 M 2026 1 24 "" nsv833888 19 63543177 63680223 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454886,nssv1454884,nssv1454885 M 95 0 3 "" nsv817878 19 63556291 63590994 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417282 S 112 0 1 "" NA18608 essv17855 19 63590775 63594002 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA10857 dgv1136e1 19 63590775 63596527 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv23096,esv1061 M 271 0 0 "" NA12043 esv2751887 2 2994 241673 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6989369,essv6989800,essv6983491,essv6983492 M 771 0 1 "" BEC_661 nsv519763 2 75793 252553 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv685875,nssv658365,nssv658330 M 2026 0 3 "" nsv833148 2 79317 234096 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441757 S 95 0 1 "" nsv213707 2 85577 90694 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232285 M 24 "" nsv468872 2 129346 201069 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543931 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01236 nsv833159 2 148491 317294 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441758,nssv1441759 M 95 0 2 "" essv2780 2 157949 334228 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18987 dgv1137e1 2 157949 915588 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv5376,essv6197,esv573 M 271 0 0 "" NA18563 nsv2561 2 166235 217293 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1469,nssv5766,nssv3005,nssv4379 M 9 4 0 "" NA12878,NA18555,NA19129,NA19240 nsv508735 2 183497 223292 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623854,nssv619886,nssv621156 M 4 3 0 "" NA10860,NA15510,NA18994 essv3569 2 240958 295803 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18987 nsv833170 2 264456 461195 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441760 S 95 0 1 "" esv34786 2 286852 836164 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6979493,essv6979494,essv6979496,essv6979495 M 771 1 0 "" NA18563 nsv9247 2 296213 299189 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22758,nssv27613,nssv23681,nssv25702,nssv28402,nssv26177,nssv23377,nssv28294,nssv24567,nssv27941,nssv24587,nssv28489,nssv26705,nssv25455,nssv27517,nssv25964 M 31 3 13 Samples from several populations that are part of the HapMap project. "" NA07029,NA10839,NA10847,NA10863,NA11830,NA12872,NA18502,NA18517,NA18564,NA18572,NA18853,NA18972,NA18975,NA19007,NA19173,NA19221 nsv9258 2 304425 846963 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24885,nssv27288,nssv23376,nssv26556,nssv27627,nssv26730,nssv26571,nssv27735,nssv22763,nssv23076,nssv26393,nssv26383,nssv24902,nssv28344,nssv23687,nssv26189,nssv26845,nssv23686,nssv28442,nssv26720,nssv27158,nssv24879,nssv27400,nssv27721 M 31 14 9 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA12740,NA12802,NA12872,NA18502,NA18504,NA18517,NA18563,NA18564,NA18853,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132 nsv833181 2 317295 495695 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441761 S 95 1 0 "" nsv469802 2 333653 497241 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649823 M 265 0 0 Samples from several populations that are part of the HapMap project. "" nsv508071 2 333877 339877 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622330,nssv621513,nssv618529,nssv624262 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv214898 2 388729 390495 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233476 M 24 "" esv2422306 2 454320 1051765 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161424 S 181 1 0 "" ND03527 nsv521394 2 459494 460602 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698004 S 2026 0 1 "" nsv213219 2 537220 537333 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv231797 M 24 "" esv2422321 2 544629 698009 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161273 S 181 1 0 "" ND03355 nsv833192 2 554442 696156 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441762 S 95 1 0 "" nsv468883 2 597107 1110566 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543937 S 1557 1 0 "" NINDS_109 nsv468894 2 686317 904564 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543945 S 1557 1 0 "" NINDS_139 nsv508746 2 714907 731571 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619887 S 4 1 0 "" NA10860 nsv2562 2 717756 720052 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4380 S 9 1 0 "" NA12878 nsv469596 2 733711 915569 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649711 M 265 0 0 Samples from several populations that are part of the HapMap project. "" nsv2563 2 752519 757928 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4381 S 9 1 0 "" NA12878 nsv519071 2 763278 766287 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696543 S 2026 0 1 "" nsv2564 2 781117 812995 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1470,nssv5767,nssv4382 M 9 3 0 "" NA12878,NA19129,NA19240 nsv508757 2 789187 799538 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623855,nssv621157,nssv619888 M 4 3 0 "" NA10860,NA15510,NA18994 nsv523188 2 807217 841144 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698903 S 2026 1 0 "" nsv468905 2 858450 982661 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543954 S 1557 0 1 "" 1780862089_A nsv508768 2 877763 952010 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619889,nssv621158 M 4 2 0 "" NA10860,NA15510 nsv214107 2 991493 991542 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232685 M 24 "" esv2750739 2 1041893 1043486 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98099 S 51 0 1 "" 22259 nsv2565 2 1187715 1234009 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10202,nssv6808,nssv4383 M 9 3 0 "" NA12156,NA12878,NA18956 nsv508779 2 1192524 1226386 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619890 S 4 1 0 "" NA10860 nsv215334 2 1249021 1249021 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233912 M 24 "" nsv214978 2 1327894 1329029 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233556 M 24 "" nsv215284 2 1336994 1337437 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233862 M 24 "" nsv468916 2 1357950 1498557 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543960 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00766 nsv2567 2 1391604 1425116 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7456 S 9 1 0 "" NA12156 nsv527311 2 1405628 1495794 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703734 S 2026 1 0 "" nsv818900 2 1405628 1499683 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416297 S 112 1 0 "" NA18856 dgv1138e1 2 1410597 1484084 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1062,essv11483 M 271 0 0 "" NA18856 esv35100 2 1410806 1484084 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6979893,essv6979892,essv6979891 M 771 1 0 "" NA18856 nsv833204 2 1420083 1604632 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441764,nssv1441765 M 95 2 0 "" nsv9269 2 1425894 1433235 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26395,nssv22438 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA18975,NA19144 nsv525619 2 1434010 1435835 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701765 S 2026 0 1 "" nsv214173 2 1439269 1439746 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232751 M 24 "" nsv2568 2 1447723 1481059 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5768 S 9 1 0 "" NA19129 nsv214904 2 1476202 1476273 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233482 M 24 "" nsv527538 2 1478934 1499683 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703999 S 2026 0 1 "" nsv508790 2 1498704 1521353 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619891,nssv621159 M 4 2 0 "" NA10860,NA15510 nsv214040 2 1504856 1504976 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232618 M 24 "" nsv215163 2 1510611 1510611 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233741 M 24 "" nsv2569 2 1514848 1521188 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1471 S 9 1 0 "" NA19240 nsv215170 2 1593307 1593435 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233748 M 24 "" nsv521199 2 1596689 1622957 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705611,nssv691309,nssv684830,nssv696248 M 2026 0 4 "" nsv215054 2 1613101 1613152 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233632 M 24 "" nsv2570 2 1728118 1762327 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3006 S 9 1 0 "" NA18555 nsv215164 2 1730951 1731336 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233742 M 24 "" nsv215466 2 1796820 1796877 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv234044 M 24 "" nsv213819 2 1796854 1796911 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232397 M 24 "" nsv508801 2 1798213 1847273 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623856,nssv619892 M 4 2 0 "" NA10860,NA18994 nsv433166 2 1841774 1846089 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463047 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA18956 dgv1139e1 2 1866728 2035145 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv8467,esv75,essv11547 M 271 0 0 "" NA18516,NA19173 nsv833215 2 1898962 2102523 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441767,nssv1441766 M 95 0 2 "" nsv9280 2 1936259 1940495 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27617 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA12155 nsv833226 2 1977173 2169323 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441768 S 95 0 1 "" nsv2571 2 1990521 2023118 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10203 S 9 1 0 "" NA18956 nsv528587 2 2117718 2174476 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705212 S 2026 0 1 "" nsv833237 2 2144138 2324206 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441769 S 95 0 1 "" esv32943 2 2156417 2164521 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99477 S 51 1 0 "" 22335 nsv213832 2 2237009 2237009 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232410 M 24 "" nsv2572 2 2462570 2505575 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7457 S 9 0 1 "" NA12156 nsv468927 2 2572695 2595545 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543969 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00031 nsv818911 2 2594695 2608032 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416298 S 112 1 0 "" NA18855 nsv2573 2 2658980 2672694 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7458 S 9 0 1 "" NA12156 nsv214805 2 2696599 2696826 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233383 M 24 "" nsv526520 2 2872058 2872551 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702831 S 2026 1 0 "" nsv528764 2 2916343 2916628 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705426 S 2026 0 1 "" nsv833248 2 3002319 3170000 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441770 S 95 1 0 "" nsv468950 2 3138798 3170391 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543982 S 1557 0 1 "" 1780862444_A nsv818922 2 3138798 3229195 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416299 S 112 1 0 "" NA18855 nsv468961 2 3149112 3618025 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv543988 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00259 nsv214922 2 3181923 3181923 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233500 M 24 "" nsv213741 2 3188685 3188685 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232319 M 24 "" nsv2574 2 3194166 3214801 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4385 S 9 1 0 "" NA12878 nsv517058 2 3205288 3206266 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv686954,nssv656184,nssv666945,nssv653702,nssv679875,nssv670122 M 2026 0 6 "" nsv523573 2 3219532 3238097 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699355 S 2026 0 1 "" nsv2575 2 3222605 3241494 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4386 S 9 0 1 "" NA12878 esv32895 2 3229380 3242657 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97527 S 51 0 1 "" 21616 dgv1140e1 2 3256238 3288649 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv902,essv18054 M 271 0 0 "" NA06993 nsv214960 2 3316653 3316967 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233538 M 24 "" nsv506993 2 3334579 3340579 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621986 S 4 1 0 "" NA10860 nsv2576 2 3640401 3670562 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5769 S 9 1 0 "" NA19129 dgv55n68 2 3643037 3872721 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH nsv833259,nsv833270 M 95 2 0 "" nsv526821 2 3643437 3646297 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703176 S 2026 0 1 "" nsv526056 2 3687425 3715513 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702294 S 2026 0 1 "" nsv2578 2 3704605 3720541 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4387,nssv6810 M 9 0 2 "" NA12156,NA12878 nsv9291 2 3706538 3721126 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26870 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19132 dgv440n27 2 3706747 3715513 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv469205,nsv469183,nsv469083,nsv469127,nsv469271,nsv469094,nsv469038,nsv469216,nsv469194,nsv469027,nsv469305,nsv469138,nsv469172,nsv469349,nsv469238,nsv469160,nsv469072,nsv469116,nsv469338,nsv469249,nsv469105,nsv469016,nsv468972,nsv469049,nsv469283,nsv469005,nsv469260,nsv468994,nsv469316,nsv469227,nsv468983,nsv469061,nsv469149,nsv469327,nsv469294 M 1557 0 35 "" 1780854038_A,1780854391_A,1780854419_A,1780854594_A,1780862040_A,1780862123_A,1780862437_A,1798860210_A,HGDP00045,HGDP00057,HGDP00326,HGDP00534,HGDP00583,HGDP00606,HGDP00613,HGDP00631,HGDP00653,HGDP00671,HGDP00674,HGDP00679,HGDP00680,HGDP00740,HGDP01064,HGDP01071,HGDP01152,HGDP01259,HGDP01362,HGDP01370,NINDS_165,NINDS_203,NINDS_216,NINDS_217,NINDS_26,NINDS_40,NINDS_46 nsv818933 2 3706747 3715513 CNV Gain+Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415612,nssv1417001,nssv1415561,nssv1418325,nssv1417002,nssv1418044,nssv1418043,nssv1416220,nssv1416126,nssv1416127,nssv1418344,nssv1418436,nssv1415611,nssv1416125 M 112 1 13 "" NA06985,NA06991,NA06993,NA06994,NA07029,NA10835,NA10859,NA11881,NA12057,NA12239,NA12248,NA12878,NA12891,NA12892 nsv516551 2 3706747 3717437 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv671322,nssv657457,nssv677617,nssv692317,nssv682984,nssv655632,nssv677898,nssv692403,nssv669066,nssv658108,nssv668427,nssv681162,nssv685600,nssv660513,nssv670883,nssv680395,nssv655772,nssv688578,nssv666286,nssv651721,nssv684531,nssv686003,nssv693853,nssv693514,nssv652511,nssv654903,nssv674791,nssv684318,nssv653747,nssv678698,nssv667227,nssv663611,nssv655215,nssv688106,nssv687842,nssv676824,nssv676384,nssv660382,nssv665066,nssv688863,nssv679542,nssv689609,nssv682641,nssv688339,nssv654935,nssv655171,nssv660410,nssv675212,nssv682603,nssv683399,nssv686901,nssv678243,nssv675885,nssv676298,nssv657549,nssv691598,nssv673143,nssv690892,nssv668758,nssv683081,nssv660960,nssv659633,nssv665630,nssv662988,nssv676152,nssv671176,nssv684954,nssv673418,nssv653678,nssv653434,nssv660488,nssv668615,nssv663558,nssv678632,nssv686386,nssv659803,nssv686739,nssv671416,nssv676009,nssv690834,nssv668409,nssv688823,nssv693783,nssv679952,nssv680190,nssv681483,nssv688008,nssv685069,nssv656055,nssv682928,nssv652536,nssv690183,nssv660231,nssv681059,nssv677849,nssv653161,nssv661541,nssv686139,nssv681767,nssv652961,nssv652400,nssv664806,nssv691628,nssv693136,nssv674751,nssv689145,nssv663190,nssv677559,nssv690631,nssv686035,nssv653097,nssv674053,nssv689127,nssv683928,nssv674476,nssv667879,nssv665731,nssv652287,nssv658432,nssv668788,nssv653885,nssv691770,nssv659125,nssv671850,nssv680595,nssv677405,nssv681218,nssv667381,nssv684149,nssv672791,nssv671827,nssv673378,nssv656008,nssv679359,nssv656164,nssv673638,nssv666716,nssv682373,nssv666258,nssv656758,nssv672707,nssv679153,nssv690725,nssv688970,nssv652322,nssv654359,nssv683106,nssv676589,nssv685167,nssv655967,nssv658738 M 2026 0 151 "" nsv442648 2 3707233 3716536 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv438170 2 3710905 3715513 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470086,nssv470075 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA12248,NA12873 dgv1141e1 2 3730174 3770183 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1201,essv16558 M 271 0 0 "" NA19193 dgv208n21 2 3784030 3794626 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv517222,nsv526603 M 2026 0 74 "" nsv520707 2 3787758 3794626 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694395 S 2026 0 1 "" nsv517230 2 3986977 3988543 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv677055,nssv654074 M 2026 0 2 "" nsv2579 2 4032344 4065966 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7459 S 9 1 0 "" NA12156 dgv209n21 2 4085410 4090430 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv522724,nsv528306 M 2026 0 2 "" nsv518172 2 4121094 4122348 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695593 S 2026 0 1 "" nsv214705 2 4222742 4227939 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233283 M 24 "" nsv2580 2 4253800 4302151 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6811,nssv5770,nssv10204,nssv4388,nssv2247,nssv1472 M 9 0 6 "" NA12156,NA12878,NA18555,NA18956,NA19129,NA19240 nsv508708 2 4268232 4312209 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622804,nssv620176,nssv619025,nssv617453 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv469360 2 4342185 4386935 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544251 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00251 nsv818944 2 4375491 4379453 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417176 S 112 0 1 "" NA18550 nsv9302 2 4399959 4404244 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28529 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19221 dgv1142e1 2 4402072 4417591 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv20988,esv1269 M 271 0 0 "" NA10863 nsv508709 2 4431118 4975035 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620177,nssv619026 M 4 0 2 "" NA10860,NA15510 nsv510876 2 4431118 5118180 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624373 S 4 0 0 "" NA18994 nsv524948 2 4601533 4619326 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700966 S 2026 0 1 "" nsv523012 2 4606632 4611466 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698687 S 2026 1 0 "" nsv518752 2 4665493 4665926 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696201 S 2026 0 1 "" nsv523510 2 4675398 4690749 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699282 S 2026 0 1 "" nsv524365 2 4689940 4702021 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700276 S 2026 0 1 "" nsv2581 2 4712005 4738143 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv11007,nssv2248,nssv1473,nssv10205,nssv5771,nssv4389,nssv6812 M 9 7 0 "" NA12156,NA12878,NA15510,NA18555,NA18956,NA19129,NA19240 nsv213472 2 4713169 4713169 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232050 M 24 "" nsv528723 2 4714275 4729252 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705377 S 2026 0 1 "" nsv146 2 4717630 4738143 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv146 S 1 1 0 "" NA15510 nsv9313 2 4722151 4724666 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27725,nssv27821,nssv27835 M 31 3 0 Samples from several populations that are part of the HapMap project. "" NA10839,NA12155,NA18564 nsv214571 2 4722596 4722596 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233149 M 24 "" nsv214955 2 4723051 4723051 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233533 M 24 "" nsv213961 2 4741854 4741911 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232539 M 24 "" nsv2582 2 4769191 4804122 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1474 S 9 1 0 "" NA19240 nsv213539 2 4811350 4811514 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232117 M 24 "" nsv2583 2 4870264 4875073 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4390 S 9 1 0 "" NA12878 nsv520390 2 4957294 4973951 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv679759,nssv663545,nssv683084 M 2026 3 0 "" nsv2584 2 4977827 4990451 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5772 S 9 1 0 "" NA19129 nsv214768 2 4990817 4990817 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233346 M 24 "" nsv833281 2 5055668 5298115 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441773 S 95 1 0 "" nsv2585 2 5144323 5174835 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6813 S 9 0 1 "" NA12156 nsv469371 2 5189274 5207332 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544258 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00019 nsv528387 2 5190742 5192364 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704976 S 2026 0 1 "" nsv213313 2 5287030 5296631 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv231891 M 24 "" nsv508072 2 5315137 5321137 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618530,nssv624263,nssv622332,nssv621515 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv215298 2 5368234 5369189 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233876 M 24 "" nsv469382 2 5399227 5450900 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544265 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00607 nsv213443 2 5438367 5438633 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232021 M 24 "" dgv1143e1 2 5448267 5618952 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv23683,esv111,essv3270,essv7567 M 271 0 0 "" NA10863,NA18545,NA18972 nsv2586 2 5572044 5608492 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1475,nssv4391,nssv3007 M 9 3 0 "" NA12878,NA18555,NA19240 nsv508812 2 5575264 5586975 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619893,nssv623858,nssv621160 M 4 3 0 "" NA10860,NA15510,NA18994 nsv2587 2 5630350 5663919 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1476 S 9 1 0 "" NA19240 nsv525574 2 5631137 5644455 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701713 S 2026 0 1 "" nsv213255 2 5654900 5654980 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv231833 M 24 "" nsv833292 2 5754099 5918719 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441777,nssv1441776,nssv1441775 M 95 1 2 "" nsv520446 2 5761031 5769493 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv686956,nssv671548,nssv672735,nssv672266 M 2026 0 4 "" nsv520803 2 5813752 5815258 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697621 S 2026 0 1 "" nsv2589 2 5824493 5858800 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4392 S 9 1 0 "" NA12878 nsv506994 2 5906588 5912588 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620709,nssv623326 M 4 2 0 "" NA15510,NA18994 nsv524347 2 5909146 5910143 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700255 S 2026 0 1 "" nsv506995 2 5973506 5979506 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620710 S 4 1 0 "" NA15510 nsv2590 2 6058437 6079717 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4649 S 9 0 1 "" NA19129 nsv506996 2 6089267 6095267 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623327 S 4 1 0 "" NA18994 nsv2591 2 6105307 6139018 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4393 S 9 1 0 "" NA12878 nsv833303 2 6139702 6167207 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441781,nssv1441778,nssv1441779,nssv1441780 M 95 0 4 "" nsv2592 2 6241246 6287970 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1477 S 9 0 1 "" NA19240 nsv437275 2 6247843 6261478 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467156 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19120 nsv9325 2 6248417 6259366 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27512,nssv26874,nssv28024 M 31 0 3 Samples from several populations that are part of the HapMap project. "" NA18504,NA19173,NA19240 dgv31n64 2 6248620 6257999 CNV Loss Wang_et_al_2007 17921354 SNP_array nsv818955,nsv818966 M 112 0 9 "" NA19093,NA19119,NA19120,NA19160,NA19161,NA19171,NA19173,NA19238,NA19240 nsv517145 2 6248620 6260615 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv682418,nssv659298,nssv653863,nssv690478,nssv683805,nssv692874,nssv688203,nssv682908,nssv684650,nssv688770,nssv691910,nssv656675,nssv654007,nssv686498,nssv668679,nssv664037,nssv692031,nssv686957,nssv672508,nssv675938,nssv687029,nssv675564,nssv652473,nssv679802,nssv679591,nssv679728,nssv677734,nssv678053,nssv659537,nssv671778,nssv669246,nssv667526,nssv691384,nssv661791,nssv665226,nssv685817,nssv662532,nssv689509,nssv680397,nssv660033,nssv665479,nssv690405,nssv656975,nssv685693,nssv689218,nssv664854,nssv682063,nssv685048,nssv658824,nssv662020,nssv679319,nssv666079,nssv674094,nssv660594,nssv652434,nssv686642,nssv671714 M 2026 0 57 "" dgv1144e1 2 6248649 6256382 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv13212,essv13510,essv14223,essv11321 M 271 0 0 "" NA18913,NA18914,NA19120,NA19128 dgv1145e1 2 6248649 6273145 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv13233,essv8402,essv14826,essv12090,essv12123,essv8886,esv1154,essv13957,essv7979,essv8079,essv7930,essv15182 M 271 0 0 "" NA18504,NA19093,NA19099,NA19119,NA19131,NA19160,NA19161,NA19171,NA19173,NA19209,NA19240 nsv442656 2 6248910 6258452 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv1146e1 2 6250738 6261478 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv8553,essv12052 M 271 0 0 "" NA18503,NA19238 nsv9336 2 6279100 6287859 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24882,nssv25159,nssv24286 M 31 3 0 Samples from several populations that are part of the HapMap project. "" NA07048,NA10863,NA18537 nsv526387 2 6302460 6302541 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702685 S 2026 0 1 "" nsv214974 2 6328840 6329095 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233552 M 24 "" nsv214973 2 6329387 6329642 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233551 M 24 "" nsv213376 2 6351107 6352791 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv231954 M 24 "" nsv214828 2 6351318 6351553 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233406 M 24 "" nsv527932 2 6474592 6475105 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704440 S 2026 0 1 "" nsv2593 2 6554776 6599892 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7461 S 9 0 1 "" NA12156 nsv214519 2 6569367 6572886 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233097 M 24 "" nsv2594 2 6607764 6641481 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4394 S 9 1 0 "" NA12878 nsv2595 2 6643722 6696649 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9563 S 9 0 1 "" NA18507 nsv833315 2 6643756 6828897 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441782 S 95 1 0 "" nsv525741 2 6645117 6657985 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701907 S 2026 0 1 "" nsv506997 2 6747009 6753009 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621987 S 4 1 0 "" NA10860 nsv833326 2 6935625 7093162 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441783 S 95 0 1 "" nsv2596 2 6965631 6974354 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6814 S 9 1 0 "" NA12156 nsv2597 2 7020015 7051563 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4395 S 9 1 0 "" NA12878 nsv508073 2 7027131 7033131 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618531 S 4 0 1 "" CHM nsv2598 2 7039335 7084013 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7462 S 9 0 1 "" NA12156 nsv526590 2 7117105 7118187 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702908 S 2026 0 1 "" nsv469394 2 7147797 7181586 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544270 S 1557 0 1 "" NINDS_173 dgv56n17 2 7179768 7196985 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437276,nsv437277 M 60 0 2 "" NA18857,NA19129 nsv833337 2 7287871 7471744 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441784 S 95 0 1 "" nsv506998 2 7361382 7367382 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620711,nssv623328,nssv617555 M 4 3 0 "" CHM,NA15510,NA18994 esv2422245 2 7958441 8508097 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161351 S 181 1 0 "" ND01702 nsv516711 2 8130787 8131223 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv691354,nssv670317 M 2026 0 2 "" nsv833348 2 8156269 8366140 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441786 S 95 1 0 "" nsv213459 2 8489115 8489206 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232037 M 24 "" nsv525002 2 8555701 8581679 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701035 S 2026 1 0 "" nsv214528 2 8678889 8678889 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233106 M 24 "" nsv833359 2 8900922 9081399 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441787 S 95 0 1 "" nsv521067 2 8928368 8929274 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697766 S 2026 0 1 "" nsv517367 2 8944103 9137114 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701848,nssv670784,nssv684131,nssv656894,nssv688027,nssv672553,nssv651825 M 2026 7 0 "" nsv2600 2 8977482 9011653 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3008 S 9 1 0 "" NA18555 nsv521113 2 9179113 9187788 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697794 S 2026 0 1 "" nsv517184 2 9236123 9240922 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv653956,nssv686388 M 2026 0 2 "" nsv2601 2 9432892 9466278 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4396 S 9 1 0 "" NA12878 nsv2602 2 9499544 9544262 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7463 S 9 0 1 "" NA12156 nsv214045 2 9684637 9693589 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232623 M 24 "" nsv518363 2 9727827 9738913 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695790 S 2026 0 1 "" nsv527083 2 9748592 9761246 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703462 S 2026 0 1 "" nsv469405 2 9764972 9915545 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544272 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00573 nsv508823 2 9825584 9915727 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619894,nssv623859 M 4 2 0 "" NA10860,NA18994 nsv2603 2 9826128 9833250 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6815 S 9 1 0 "" NA12156 nsv518227 2 9844052 9859712 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695654 S 2026 0 1 "" nsv524327 2 9864113 9905366 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700233 S 2026 0 1 "" nsv2604 2 9879696 9893071 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4397 S 9 1 0 "" NA12878 nsv517701 2 9884554 9905366 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv652900,nssv654701,nssv688028,nssv656213 M 2026 0 4 "" nsv528645 2 9896811 9926155 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705277 S 2026 1 0 "" dgv441n27 2 9900062 9926155 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv469416,nsv469427 M 1557 2 0 "" 1780862014_A,HGDP01319 nsv213438 2 10089176 10089176 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232016 M 24 "" nsv508826 2 10093321 10141583 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619895 S 4 1 0 "" NA10860 nsv818977 2 10284365 10343636 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416538,nssv1416527 M 112 2 0 "" NA10857,NA12043 dgv146e55 2 10292066 10334900 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv34981,esv35171 M 771 2 0 "" NA10857,NA12043 dgv1147e1 2 10297740 10357304 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1163,essv23114 M 271 0 0 "" NA12043 nsv9347 2 10318085 10320519 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27408 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18860 nsv527868 2 10344680 10346542 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704367 S 2026 0 1 "" nsv508827 2 10442921 10517180 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619896 S 4 1 0 "" NA10860 nsv2605 2 10472127 10494218 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4398 S 9 1 0 "" NA12878 dgv1148e1 2 10546176 10639567 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv4326,esv1093 M 271 0 0 "" NA18564 nsv833370 2 10575747 10736000 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441788 S 95 1 0 "" nsv9358 2 10580919 10637419 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27930 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18564 nsv519963 2 10634989 10639567 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv684693,nssv680797,nssv659716 M 2026 0 3 "" nsv525241 2 10634989 10654074 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701331 S 2026 0 1 "" nsv522123 2 10647181 10656237 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694896 S 2026 0 1 "" nsv441747 2 10653118 10655453 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv833381 2 10674063 10861882 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441789 S 95 0 1 "" dgv210n21 2 10836696 10840386 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv526794,nsv525276 M 2026 2 0 "" nsv508074 2 10876500 10882500 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618532,nssv622333 M 4 0 2 "" CHM,NA10860 nsv524969 2 10920162 10921615 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700994 S 2026 0 1 "" nsv818988 2 10940796 10960208 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416300 S 112 1 0 "" NA18855 nsv438181 2 10971591 10972553 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470108,nssv470097 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA07000,NA12813 nsv520545 2 10982146 10982386 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697478 S 2026 0 1 "" nsv521177 2 10990744 11017297 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697828 S 2026 0 1 "" nsv833392 2 11005178 11185837 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441790 S 95 1 0 "" nsv817618 2 11005896 11026352 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416301 S 112 1 0 "" NA18855 nsv469438 2 11005896 11036342 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544302 S 1557 0 1 "" NINDS_54 nsv523537 2 11011754 11025915 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699313 S 2026 0 1 "" nsv2606 2 11126314 11155373 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6816 S 9 1 0 "" NA12156 nsv516163 2 11150569 11156019 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv683649,nssv678476,nssv688263,nssv685373,nssv661840,nssv688223,nssv675089,nssv682752,nssv660032,nssv674682,nssv669277,nssv662324,nssv658496,nssv692938,nssv664552,nssv652930,nssv675310,nssv667574,nssv667380,nssv684599,nssv657662,nssv665588,nssv674748,nssv661169,nssv672178,nssv664082,nssv652176,nssv661296,nssv682132,nssv651885,nssv658974,nssv685665,nssv692754,nssv674563,nssv674635,nssv656041,nssv692970,nssv677731,nssv692002,nssv654918,nssv666254,nssv678434,nssv684715,nssv665612,nssv673827,nssv666102,nssv668313,nssv653338,nssv654757,nssv655262,nssv668511,nssv681833,nssv676745,nssv668729,nssv655118,nssv686766,nssv682656,nssv675443,nssv667286,nssv697839,nssv682703,nssv688660,nssv662079,nssv669013,nssv691983,nssv677770,nssv671055,nssv653504,nssv691751,nssv683078,nssv656887,nssv689123,nssv680708,nssv665271,nssv688338,nssv659426,nssv692804,nssv680837,nssv665902,nssv669935,nssv684529,nssv684733,nssv669802,nssv678988,nssv661516,nssv664917,nssv672214,nssv664824,nssv652575,nssv678598,nssv659358,nssv690287,nssv676688,nssv679227,nssv671124,nssv661442,nssv675525,nssv685514,nssv669558,nssv670003,nssv677921,nssv657690,nssv683189,nssv665208,nssv651822,nssv675002,nssv670716,nssv657814,nssv652246,nssv662904,nssv663442,nssv684573,nssv678300,nssv657241,nssv679470,nssv679621,nssv669432,nssv678753,nssv692449,nssv663649,nssv683282 M 2026 115 6 "" dgv211n21 2 11155252 11158892 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv519160,nsv527179 M 2026 2 0 "" nsv520789 2 11209665 11262822 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv679228,nssv675444,nssv680709,nssv685641 M 2026 0 4 "" nsv526038 2 11319676 11440129 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702270 S 2026 0 1 "" nsv2607 2 11331939 11360530 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5775 S 9 0 1 "" NA19129 nsv469449 2 11759252 11804610 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv544313 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01072 nsv527025 2 11774183 11784057 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703400 S 2026 0 1 "" nsv528398 2 11829703 11829772 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704988 S 2026 1 0 "" nsv2608 2 11861294 11870017 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6817 S 9 1 0 "" NA12156 nsv833403 2 11895150 12076232 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441791 S 95 1 0 "" nsv2609 2 11928361 11960960 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2249 S 9 1 0 "" NA18555 nsv508710 2 11933569 11979153 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617454 S 4 0 1 "" CHM nsv2611 2 11957750 12002768 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7465 S 9 0 1 "" NA12156 nsv2612 2 12082869 12116437 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5776 S 9 1 0 "" NA19129 nsv437402 2 12251629 12258546 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467283 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA12801 nsv518596 2 12323221 12324438 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696043 S 2026 0 1 "" nsv524249 2 12348033 12388791 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700141 S 2026 0 1 "" nsv2613 2 12375523 12405112 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6818 S 9 1 0 "" NA12156 nsv214225 2 12448944 12448944 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232803 M 24 "" nsv508075 2 12918866 12924866 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621516 S 4 0 1 "" NA15510 nsv2614 2 13014082 13043692 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4399 S 9 1 0 "" NA12878 nsv517437 2 13038978 13040330 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv688718,nssv652960,nssv660673,nssv656587,nssv684676,nssv656840,nssv652017 M 2026 0 7 "" nsv833414 2 13065210 13221246 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441792 S 95 1 0 "" nsv518954 2 13097243 13152814 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696422 S 2026 1 0 "" nsv527888 2 13100438 13106983 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704391 S 2026 0 1 "" nsv214196 2 13121756 13122035 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232774 M 24 "" dgv442n27 2 13141874 13239616 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv455686,nsv455708,nsv469493,nsv455697,nsv455675,nsv469460,nsv455664,nsv469471,nsv469482 M 1557 9 0 "" 1788485588_A,HGDP00966,HGDP01072,HGDP01266,HGDP01272,HGDP01274,HGDP01280,HGDP01379,NINDS_222 nsv516862 2 13143342 13236199 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv658171,nssv692094,nssv661538,nssv655713,nssv654522 M 2026 5 0 "" nsv833426 2 13191119 13385418 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441793 S 95 0 1 "" dgv1149e1 2 13234898 13698420 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv282,essv17983 M 271 0 0 "" NA12003 nsv9369 2 13290667 13292734 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28599 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19221 nsv833437 2 13315433 13501346 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441794 S 95 1 0 "" nsv508076 2 13321402 13327402 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621517,nssv624264,nssv618533 M 4 0 3 "" CHM,NA15510,NA18994 nsv9380 2 13324820 13331505 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28639 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19221 nsv2615 2 13355082 13387741 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10206 S 9 1 0 "" NA18956 dgv1150e1 2 13422309 13608832 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv24698,essv19393,essv15992 M 271 0 0 "" NA11829,NA11840,NA18501 essv24302 2 13422309 13698420 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA10856 nsv9391 2 13444264 13548914 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26172,nssv26865,nssv28679,nssv26725,nssv27168,nssv25439,nssv23391,nssv23084,nssv27034,nssv23987,nssv25165,nssv25162,nssv22766,nssv27038,nssv28393,nssv23081,nssv25947,nssv26566,nssv27825 M 31 4 9 Samples from several populations that are part of the HapMap project. "" NA07048,NA10863,NA11830,NA12155,NA12740,NA12802,NA18517,NA18942,NA18980,NA19132,NA19144,NA19221,NA19240 esv33147 2 13466146 13510291 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97591,essv97258,essv99664,essv100371,essv94210 M 51 0 5 "" 21616,22075,22217,22300,22394 nsv526994 2 13493490 13515734 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703369 S 2026 0 1 "" nsv9402 2 13576224 13586179 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27920 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA12155 nsv9413 2 13650259 13657431 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28719 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19221 nsv9424 2 13660120 13670292 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28759 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19221 esv33656 2 13660503 13670293 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv96760 S 51 0 1 "" 21659 nsv524272 2 13667139 13670230 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700170 S 2026 0 1 "" nsv9436 2 13670292 13673197 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24576 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18537 nsv833448 2 13766382 13898212 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441795 S 95 1 0 "" nsv528607 2 13857515 13906225 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705233 S 2026 0 1 "" nsv518955 2 13896194 13904092 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696423 S 2026 1 0 "" nsv526974 2 13959644 13967907 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703346 S 2026 1 0 "" nsv2616 2 14144699 14178366 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1478 S 9 1 0 "" NA19240 nsv213826 2 14220008 14220078 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232404 M 24 "" nsv833459 2 14252027 14416140 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441797 S 95 1 0 "" nsv508077 2 14256199 14262199 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624265,nssv618534 M 4 0 2 "" CHM,NA18994 esv2751827 2 14279825 14330875 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6988398,essv6981386,essv6981387 M 771 1 0 "" BEC_175 nsv526442 2 14290887 14333705 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702745 S 2026 1 0 "" dgv1151e1 2 14296389 14319566 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv24213,esv1344 M 271 0 0 "" NA12144 dgv147e55 2 14304508 14331852 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv34509,esv2751828 M 771 2 0 "" NA12144,SPC_178 nsv517171 2 14306319 14362781 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv692245,nssv675111,nssv678552,nssv692189,nssv652217,nssv671175,nssv653922,nssv688577,nssv676586,nssv693984 M 2026 10 0 "" esv2751829 2 14310697 14367370 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6981718,essv6985652 M 771 1 0 "" BEC_328 nsv2617 2 14332966 14378423 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6820 S 9 0 1 "" NA12156 nsv833470 2 14384080 14497952 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441798 S 95 1 0 "" nsv528565 2 14447044 14460732 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705181 S 2026 1 0 "" nsv508712 2 14518254 14556385 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617455 S 4 0 1 "" CHM nsv9447 2 14627422 14636584 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27520,nssv27298,nssv27029 M 31 0 3 Samples from several populations that are part of the HapMap project. "" NA18860,NA18942,NA19240 nsv455730 2 14642533 14660209 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533225 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00797 dgv1152e1 2 14642533 14660690 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv19729,esv976 M 271 0 0 "" NA10859 nsv526615 2 14643359 14660209 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702935 S 2026 0 1 "" nsv2618 2 14646728 14668226 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4400 S 9 0 1 "" NA12878 dgv1153e1 2 14648006 14660690 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv24165,essv22256,essv24096,essv21501 M 271 0 0 "" NA07048,NA11992,NA12003,NA12751 nsv516976 2 14653022 14673776 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv655329,nssv671940,nssv654959,nssv697620,nssv693353,nssv659592,nssv676383,nssv659245,nssv675505,nssv655237,nssv657664,nssv652558,nssv677614,nssv663187,nssv658736,nssv683052,nssv654845,nssv674979,nssv673925,nssv654475,nssv684885,nssv654256,nssv693009,nssv688861,nssv676469,nssv656588,nssv670819,nssv654358,nssv661608,nssv687910,nssv672215,nssv663214,nssv682021,nssv676358,nssv652822,nssv662602,nssv659873,nssv655652,nssv666591,nssv680649,nssv687666,nssv691584,nssv653676,nssv652801,nssv690194,nssv667877,nssv669725,nssv690366,nssv693545,nssv672528,nssv672592,nssv693780,nssv665334,nssv669711,nssv651673,nssv653540,nssv667597,nssv683994,nssv687154,nssv677641,nssv667726,nssv684546,nssv657887,nssv656935,nssv671660,nssv684783,nssv653367,nssv657815,nssv688719,nssv654697,nssv692003 M 2026 0 71 "" nsv9458 2 14654325 14661808 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25698 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA07048 esv32757 2 14655733 14660298 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97558,essv99741,essv100410 M 51 0 3 "" 21616,22217,22300 nsv817629 2 14655988 14660209 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416129,nssv1418046,nssv1418045,nssv1416130,nssv1415936 M 112 0 5 "" NA10859,NA11882,NA12751,NA12878,NA12891 dgv1154e1 2 14655988 14660690 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv24335,essv18787,essv18018,essv19039 M 271 0 0 "" NA07034,NA11882,NA12878,NA12891 nsv455741 2 14655988 14715798 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533232 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00630 nsv441748 2 14656867 14660691 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" esv2751830 2 14657379 14660700 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6984703,essv6984704 M 771 0 1 "" SPC_167 nsv524713 2 14716375 14717412 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700698 S 2026 0 1 "" nsv528953 2 14837871 14842480 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705649 S 2026 1 0 "" nsv469525 2 14892457 15056931 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649598 M 265 0 0 Samples from several populations that are part of the HapMap project. "" nsv471616 2 14892458 15056931 CNV Loss Sharp et al 2005 15918152 BAC_aCGH,FISH Eichler Segmental Duplication BAC array nssv548847 S 48 0 1 "" NA10493 nsv527540 2 14920480 14921640 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704001 S 2026 0 1 "" nsv515567 2 14955346 15857376 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702968,nssv681394,nssv695341,nssv681566,nssv663925,nssv702504,nssv655860,nssv695669,nssv682350,nssv677848,nssv703182,nssv665999 M 2026 4 8 "" nsv213809 2 15116884 15117209 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232387 M 24 "" dgv1155e1 2 15152787 15308457 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv112,essv13075 M 271 0 0 "" NA18852 nsv214726 2 15881709 15881709 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233304 M 24 "" nsv2619 2 15885945 15920617 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3010 S 9 1 0 "" NA18555 nsv520284 2 15955021 15969715 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694373 S 2026 1 0 "" nsv520657 2 16096115 16100378 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv675260,nssv673619 M 2026 0 2 "" nsv2620 2 16391807 16425191 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3011 S 9 1 0 "" NA18555 nsv517581 2 16403478 16404567 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv693781,nssv652431,nssv667175,nssv689607,nssv662816,nssv681578,nssv678458 M 2026 0 7 "" nsv455763 2 16403478 16473011 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533248 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01237 nsv833481 2 16419641 16609221 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441799 S 95 1 0 "" nsv528305 2 16467910 16473011 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704883 S 2026 0 1 "" nsv833492 2 16488407 16640700 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441802,nssv1441801,nssv1441800 M 95 3 0 "" nsv506999 2 16647359 16653359 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621988,nssv620712 M 4 2 0 "" NA10860,NA15510 nsv2622 2 16750821 16785026 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3012 S 9 1 0 "" NA18555 nsv525774 2 16945725 16957337 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701946 S 2026 1 0 "" nsv508713 2 16961180 16991790 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617456 S 4 0 1 "" CHM dgv1156e1 2 16983359 16989153 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv7893,esv982 M 271 0 0 "" NA19239 nsv833503 2 17010413 17181442 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441803 S 95 0 1 "" nsv507000 2 17064064 17070064 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621989,nssv623329 M 4 2 0 "" NA10860,NA18994 esv2422487 2 17114186 17263012 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161541 S 181 1 0 "" ND01493 nsv455775 2 17138087 17154006 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533259 S 1557 0 1 "" 1780854592_A nsv437413 2 17140372 17163789 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467294 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA12801 nsv517728 2 17143032 17154006 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv672785,nssv688637,nssv669888,nssv673268,nssv659800,nssv691833,nssv684258,nssv671893,nssv688382,nssv657918,nssv690288,nssv686398,nssv685992,nssv683105,nssv678553,nssv667176,nssv677053,nssv653028,nssv687584,nssv691962 M 2026 0 20 "" nsv817640 2 17143032 17154006 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416030,nssv1416029 M 112 0 2 "" NA12801,NA12812 nsv438193 2 17144756 17154006 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470130,nssv470141,nssv470152,nssv470119 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA12801,NA12812 nsv2623 2 17361632 17406276 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7466 S 9 0 1 "" NA12156 nsv528878 2 17396073 17401126 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705558 S 2026 0 1 "" nsv833514 2 17399264 17552250 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441804 S 95 1 0 "" nsv213269 2 17580976 17580976 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv231847 M 24 "" dgv1157e1 2 17809678 17896719 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1091,essv5846 M 271 0 0 "" NA18524 nsv522195 2 17829758 17884078 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694055 S 2026 0 1 "" nsv518050 2 18005478 18311843 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695461 S 2026 1 0 "" dgv1158e1 2 18063761 18147135 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv15436,esv891 M 271 0 0 "" NA19206 nsv528069 2 18084166 18114470 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704605 S 2026 1 0 "" nsv437278 2 18085197 18131392 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467159 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19094 nsv438204 2 18093440 18114469 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470208,nssv470197,nssv470186,nssv470163,nssv470174 M 269 0 3 Samples from several populations that are part of the HapMap project. "" NA19093,NA19094,NA19206 nsv441749 2 18095303 18114884 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv1159e1 2 18097748 18147135 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv12916,essv8415 M 271 0 0 "" NA19093,NA19094 nsv817651 2 18106800 18114470 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418252,nssv1418251 M 112 0 2 "" NA19093,NA19094 nsv516214 2 18106800 18125419 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv670838,nssv687404,nssv680068,nssv666854,nssv693103,nssv682022,nssv656635,nssv686792,nssv676746,nssv675729,nssv704073,nssv685872,nssv703664,nssv668589,nssv675113,nssv668676,nssv658325,nssv656357 M 2026 2 16 "" nsv455808 2 18107218 18173583 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533284 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00007 esv2751834 2 18238269 18263500 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6988842,essv6984735 M 771 1 0 "" SPC_171 nsv516186 2 18247833 18264873 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv681694,nssv666673,nssv658148 M 2026 3 0 "" esv2751835 2 18249967 18263500 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6982628,essv6986218 M 771 1 0 "" BEC_573 esv2751836 2 18249967 18281856 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6981648,essv6985626 M 771 1 0 "" BEC_311 nsv437424 2 18308462 18312227 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467305 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA10861 nsv438215 2 18311252 18311843 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470230,nssv470219 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA10861,NA11994 esv2751837 2 18343641 18934742 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6988559,essv6982612,essv6982613,essv6986214 M 771 1 0 "" BEC_570 nsv833525 2 18361712 18534216 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441805 S 95 1 0 "" nsv518051 2 18372241 18380492 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695462 S 2026 1 0 "" nsv213779 2 18456323 18456323 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232357 M 24 "" nsv520890 2 18608193 18609162 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv677239,nssv689398,nssv677023,nssv689757 M 2026 0 4 "" nsv2624 2 18630805 18665802 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4401 S 9 1 0 "" NA12878 nsv519085 2 18677280 18812307 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696559 S 2026 0 1 "" nsv213907 2 18827778 18828979 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232485 M 24 "" nsv2625 2 18933184 18960796 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1479 S 9 1 0 "" NA19240 nsv2626 2 19102168 19157069 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv11008,nssv5777,nssv9564,nssv1480,nssv6821,nssv9342,nssv2250,nssv4402 M 9 0 8 "" NA12156,NA12878,NA15510,NA18507,NA18517,NA18555,NA19129,NA19240 nsv157 2 19109244 19149165 CNV Loss Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv157 S 1 0 1 "" NA15510 nsv508714 2 19121454 19157380 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617457,nssv622805,nssv619027,nssv620178 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv516775 2 19310927 19331035 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv670755,nssv690182 M 2026 0 2 "" nsv2627 2 19407107 19440536 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7467 S 9 1 0 "" NA12156 nsv522943 2 19409217 19418846 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698608 S 2026 0 1 "" nsv517767 2 19502162 19504403 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv691627,nssv653160,nssv670913,nssv676262 M 2026 0 4 "" nsv2628 2 19656586 19703286 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1481 S 9 0 1 "" NA19240 nsv523971 2 19762487 19764669 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699823 S 2026 0 1 "" nsv2629 2 19809824 19842681 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2251 S 9 1 0 "" NA18555 nsv518598 2 19889572 19894838 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696045 S 2026 0 1 "" esv33534 2 19908037 19908493 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98155 S 51 1 0 "" 21772 nsv522640 2 20019836 20030689 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv706038 S 2026 0 1 "" nsv521619 2 20019836 20072445 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698237 S 2026 0 1 "" nsv527453 2 20030689 20081837 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703894 S 2026 1 0 "" nsv2630 2 20238149 20270816 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4404 S 9 1 0 "" NA12878 nsv524207 2 20370189 20425064 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700094 S 2026 1 0 "" nsv455830 2 20543032 20581490 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533302 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00553 dgv56n68 2 20551720 20785706 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH nsv833548,nsv833537 M 95 0 2 "" nsv482049 2 20568463 20570828 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558410 S 1 1 0 "" KB1 nsv215414 2 20704684 20704761 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233992 M 24 "" nsv508828 2 20725508 20800466 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619898 S 4 1 0 "" NA10860 nsv517472 2 20736211 20776804 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv691502,nssv678051,nssv654759,nssv655403,nssv695978,nssv652118,nssv684831,nssv692918 M 2026 0 8 "" nsv527901 2 20740086 20798014 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704405 S 2026 0 1 "" nsv455841 2 21008321 21057205 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533310 S 1557 0 1 "" 1780862564_A nsv455852 2 21047370 21064957 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533319 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01308 nsv507001 2 21074880 21080880 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623330 S 4 1 0 "" NA18994 nsv213693 2 21195325 21195325 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232271 M 24 "" nsv518443 2 21212422 21217239 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695879 S 2026 0 1 "" nsv519215 2 21385403 21414379 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696704 S 2026 1 0 "" nsv523572 2 21400735 21404921 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699354 S 2026 0 1 "" nsv518468 2 21400735 21414379 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695904 S 2026 0 1 "" nsv455863 2 21458655 21526992 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533326 S 1557 0 1 "" 1780854464_A nsv213297 2 21484446 21484750 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv231875 M 24 "" nsv528844 2 21498877 21516655 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705522 S 2026 0 1 "" nsv2631 2 21518647 21563666 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7468 S 9 0 1 "" NA12156 nsv213358 2 21708463 21708463 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv231936 M 24 "" nsv508829 2 21938560 21986501 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621161 S 4 1 0 "" NA15510 nsv507002 2 21955005 21961005 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617556,nssv621990,nssv623331 M 4 3 0 "" CHM,NA10860,NA18994 nsv528966 2 21991422 22019832 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705665 S 2026 0 1 "" nsv2634 2 22123771 22157976 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7469 S 9 1 0 "" NA12156 esv32997 2 22240007 22243534 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv92855 S 51 0 1 "" 21939 nsv2635 2 22266401 22300730 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1483 S 9 1 0 "" NA19240 dgv212n21 2 22313913 22318986 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv524414,nsv524885 M 2026 0 2 "" nsv214479 2 22393935 22393935 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233057 M 24 "" nsv213896 2 22417720 22417807 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232474 M 24 "" nsv520667 2 22533820 22550838 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697547 S 2026 0 1 "" dgv1160e1 2 22725791 22902693 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv20161,essv12519,essv697,essv21288,essv22568,essv6045,essv20114,essv5226,essv314,essv13758,essv10470,essv18199,essv21465,essv3053,essv14346,essv6381,essv2794,essv40,essv8428,essv20441,essv2615,essv18348,essv1270,essv24959,essv9461,essv1766,essv24064,essv3707,essv21858,essv8744,essv2495,essv22072,essv16740,essv1363,essv7198,essv23189,essv13151,essv10370,essv6172,essv19596,essv15239,essv6313,essv4593,essv6680,essv14524,essv10854,essv16151,essv7524,essv24427,essv4827,essv463,essv20298,essv8157,essv8800,essv6817,essv12668,essv9213,essv21400,essv15132,essv15799,essv4912,essv16933,essv9013,essv5538,essv15594,essv1635,essv16429,essv1884,essv8317,essv6624,essv7401,essv7311,essv9984,essv12596,essv2176,essv7847,essv4406,essv13569,essv14785,essv4987,essv22959,essv176,essv7766,essv4301,essv24010,essv24271,essv4033,essv23450,essv22426,essv21734,essv13464,essv20793,essv7064,essv20923,essv23346,essv17053,essv9352,essv19209,essv3817,essv16872,essv24534,essv13908,essv17590,essv22854,essv23049,essv5040,essv6882,essv24714,essv22485,essv19977,essv11559,essv24762,essv8386,essv24580,essv7004,essv21240,essv22669,essv5357,essv13019,essv23661,essv23963,essv7702,essv18648,essv14125,essv21115,essv15305,essv9773,essv19549,essv3294,essv14998,essv5717,essv11203,essv19782,essv19169,essv4760,essv16550,essv21967,essv22113,essv17716,essv15622,essv17776,essv19465,essv21507,essv11093,essv12742,essv17195,essv18734,essv18244,essv17886,essv16192,essv1437,essv13626,essv12194,essv3361,essv21331,essv15879,essv23123,essv2008,essv12314,essv22767,essv24147,essv12861,essv20676,essv17628,essv2864,essv6228,essv14433,essv16021,essv22345,essv9922,essv2699,essv3747,essv18379,essv23607,essv1102,essv3541,essv2299,essv17232,essv10939,essv11753,essv15477,essv3104,essv22193,essv23815,essv3951,essv338,essv10337,essv21002,essv5823 M 271 0 0 "" NA06985,NA06991,NA07019,NA07345,NA07348,NA07357,NA10830,NA10831,NA10835,NA10838,NA10839,NA10846,NA10847,NA10854,NA10855,NA10856,NA10857,NA10859,NA10860,NA10861,NA10863,NA11829,NA11830,NA11832,NA11839,NA11840,NA11882,NA11992,NA11994,NA11995,NA12003,NA12006,NA12044,NA12057,NA12144,NA12146,NA12154,NA12155,NA12156,NA12234,NA12248,NA12249,NA12707,NA12716,NA12717,NA12740,NA12750,NA12752,NA12753,NA12760,NA12762,NA12763,NA12801,NA12802,NA12812,NA12813,NA12814,NA12815,NA12864,NA12865,NA12872,NA12873,NA12874,NA12878,NA12891,NA12892,NA18500,NA18501,NA18503,NA18504,NA18505,NA18506,NA18508,NA18515,NA18516,NA18524,NA18529,NA18532,NA18537,NA18540,NA18542,NA18545,NA18547,NA18558,NA18561,NA18563,NA18566,NA18570,NA18571,NA18572,NA18573,NA18576,NA18579,NA18593,NA18603,NA18605,NA18608,NA18609,NA18611,NA18612,NA18620,NA18621,NA18623,NA18633,NA18635,NA18636,NA18637,NA18853,NA18854,NA18858,NA18859,NA18861,NA18862,NA18863,NA18870,NA18871,NA18872,NA18912,NA18914,NA18942,NA18943,NA18944,NA18945,NA18947,NA18949,NA18952,NA18953,NA18960,NA18961,NA18964,NA18965,NA18966,NA18967,NA18968,NA18969,NA18970,NA18971,NA18972,NA18975,NA18976,NA18978,NA18981,NA18987,NA18990,NA18991,NA18995,NA18997,NA19003,NA19007,NA19092,NA19094,NA19098,NA19099,NA19100,NA19101,NA19102,NA19103,NA19120,NA19127,NA19128,NA19129,NA19131,NA19132,NA19137,NA19138,NA19139,NA19144,NA19145,NA19153,NA19159,NA19160,NA19161,NA19171,NA19172,NA19173,NA19192,NA19194,NA19201,NA19202,NA19204,NA19205,NA19206,NA19207,NA19208,NA19209,NA19210,NA19211,NA19222,NA19223 dgv1161e1 2 22725791 23031671 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv80,essv24861 M 271 0 0 "" NA07000 nsv508078 2 22743720 22749720 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622334,nssv618535 M 4 0 2 "" CHM,NA10860 nsv526638 2 22804290 22809367 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702960 S 2026 0 1 "" nsv833559 2 23031671 23225601 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441809 S 95 1 0 "" nsv526488 2 23066865 23094213 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702797 S 2026 1 0 "" nsv2636 2 23082368 23113807 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4405,nssv2252,nssv6822,nssv5778 M 9 4 0 "" NA12156,NA12878,NA18555,NA19129 nsv522258 2 23097624 23113062 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695038 S 2026 0 1 "" nsv508830 2 23101094 23107080 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621162,nssv623861 M 4 2 0 "" NA15510,NA18994 nsv508715 2 23188671 23271481 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619028 S 4 0 1 "" NA10860 nsv2637 2 23263842 23331411 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5779,nssv7470 M 9 0 2 "" NA12156,NA19129 nsv2638 2 23271937 23297984 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1484 S 9 1 0 "" NA19240 nsv515556 2 23379736 23379959 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv687962,nssv663479,nssv673435,nssv663894,nssv662047,nssv677530,nssv677361 M 2026 0 7 "" nsv833570 2 23573204 23751768 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441810 S 95 1 0 "" nsv214546 2 23687301 23692931 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233124 M 24 "" nsv2639 2 23746388 23778719 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2253 S 9 1 0 "" NA18555 nsv527636 2 23766548 23945829 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704105 S 2026 1 0 "" nsv455886 2 23771828 23841630 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533345 S 1557 0 1 "" NINDS_111 nsv2640 2 23884820 23899075 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6823 S 9 0 1 "" NA12156 esv33590 2 23895682 23906018 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93601 S 51 0 1 "" 21972 nsv214066 2 23940330 23942336 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232644 M 24 "" nsv524917 2 23961104 24025005 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700929 S 2026 0 1 "" nsv507003 2 24033871 24039871 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621991 S 4 1 0 "" NA10860 nsv2641 2 24216393 24237895 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7472 S 9 0 1 "" NA12156 esv32848 2 24224163 24227393 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101538,essv94774,essv97062,essv97802,essv95651,essv97291,essv101640,essv92803,essv99212,essv100259 M 51 10 0 "" 21603,21791,21817,21837,21841,21879,21909,21944,22275,22286 nsv455897 2 24249512 24452242 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533352 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00811 nsv2642 2 24491789 24527924 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9565 S 9 0 1 "" NA18507 dgv57n17 2 24509930 24531534 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437279,nsv437281,nsv437282 M 60 0 3 "" NA18506,NA18854,NA19205 nsv9469 2 24510528 24525379 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25442 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA10863 esv33087 2 24513498 24520807 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101109,essv98949,essv96449 M 51 0 3 "" 21618,21938,22261 nsv438226 2 24514090 24517703 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470274,nssv470263,nssv470241,nssv470297,nssv470285,nssv470252 M 269 0 6 Samples from several populations that are part of the HapMap project. "" NA18506,NA18507,NA18852,NA18854,NA19204,NA19205 nsv442682 2 24518633 24522779 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv528347 2 24641069 24681466 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704931 S 2026 0 1 "" nsv516493 2 24695819 24855623 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv690268,nssv655364,nssv669803,nssv668678,nssv679231,nssv703000 M 2026 6 0 "" nsv528864 2 24784114 24858701 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705544 S 2026 0 1 "" nsv2643 2 24848368 24882742 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3013 S 9 1 0 "" NA18555 nsv508831 2 24921608 24992081 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623862 S 4 1 0 "" NA18994 nsv2645 2 24968961 25013325 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2254 S 9 0 1 "" NA18555 nsv2646 2 25036343 25069455 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2255 S 9 1 0 "" NA18555 nsv524979 2 25050638 25069932 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701008 S 2026 0 1 "" nsv517715 2 25065637 25069932 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv683080,nssv663759,nssv689673,nssv668453,nssv678075,nssv660934,nssv691423,nssv678301,nssv657047,nssv679900,nssv693498,nssv689977,nssv674566,nssv693831,nssv652935,nssv672241 M 2026 0 16 "" nsv524772 2 25065637 25072394 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700763 S 2026 0 1 "" dgv57n68 2 25175993 25391544 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH nsv833581,nsv833592 M 95 0 2 "" esv33372 2 25198855 25520467 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98854,essv99882 M 51 0 2 "" 21606,22086 nsv2647 2 25201193 25225839 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6824 S 9 1 0 "" NA12156 nsv455908 2 25331124 25406125 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533361 S 1557 0 1 "" NINDS_31 esv33756 2 25539033 25540761 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99785 S 51 1 0 "" 22086 esv33316 2 25574537 26807319 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100757 S 51 0 1 "" 21656 nsv508716 2 25899100 25903594 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622806 S 4 0 1 "" NA18994 nsv215114 2 26109561 26110477 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233692 M 24 "" nsv508717 2 26177645 26266496 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619029 S 4 0 1 "" NA10860 nsv508079 2 26287792 26293792 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624266,nssv622335,nssv618536,nssv621519 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv442684 2 26288155 26290398 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv520638 2 26304392 26325019 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv688662,nssv673404,nssv679232,nssv703509 M 2026 0 4 "" nsv524918 2 26304392 26327687 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700930 S 2026 1 0 "" nsv2648 2 26312360 26357295 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7473 S 9 0 1 "" NA12156 nsv508832 2 26453013 26490963 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623863 S 4 1 0 "" NA18994 nsv2649 2 26457904 26474005 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10207,nssv7474 M 9 2 0 "" NA12156,NA18956 nsv2650 2 26475543 26495062 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4406 S 9 1 0 "" NA12878 nsv517800 2 26583665 26752143 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695203 S 2026 0 1 "" nsv455941 2 26635378 26653202 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533389 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00491 nsv455952 2 26653202 26659949 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533400 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00417 nsv817662 2 26687778 26690064 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417314 S 112 0 1 "" NA18608 nsv2651 2 26765683 26807530 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7475 S 9 0 1 "" NA12156 nsv523435 2 26782884 26840462 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699190 S 2026 0 1 "" nsv508833 2 26787155 26895603 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621163 S 4 1 0 "" NA15510 nsv522805 2 26806240 26840462 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698450 S 2026 0 1 "" nsv2652 2 26831131 26858258 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10208 S 9 1 0 "" NA18956 nsv2653 2 26863004 26887150 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9343 S 9 1 0 "" NA18517 nsv214236 2 26985856 26985856 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232814 M 24 "" nsv455974 2 27124294 27262930 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533415 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00859 nsv817673 2 27172120 27298450 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416302 S 112 1 0 "" NA18855 nsv833603 2 27193625 27398150 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441813 S 95 0 1 "" nsv482050 2 27283653 27287384 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558411 S 1 1 0 "" KB1 nsv833614 2 27398078 27586731 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441814 S 95 1 0 "" esv33516 2 27432885 27441787 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93886,essv98652,essv99904,essv93214,essv99665 M 51 5 0 "" 21634,22085,22086,22170,22217 nsv2654 2 27443962 27471288 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1485 S 9 1 0 "" NA19240 nsv817684 2 27568818 27758254 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416303 S 112 1 0 "" NA18855 nsv507004 2 27948814 27954814 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620713 S 4 1 0 "" NA15510 dgv1162e1 2 27972987 28136281 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv276,essv6814 M 271 0 0 "" NA18579 esv33936 2 28104733 28111612 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97485 S 51 0 1 "" 21616 nsv516533 2 28285203 28287423 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv670348,nssv684317,nssv668924,nssv654523,nssv678943 M 2026 0 5 "" nsv527688 2 28285203 28291627 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704164 S 2026 0 1 "" nsv215424 2 28382745 28383608 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv234002 M 24 "" nsv833625 2 28463346 28490327 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441832,nssv1441823,nssv1441831,nssv1441817,nssv1441833,nssv1441819,nssv1441830,nssv1441816,nssv1441820,nssv1441822,nssv1441821,nssv1441826,nssv1441824,nssv1441825,nssv1441834,nssv1441815,nssv1441828,nssv1441827 M 95 0 18 "" nsv520154 2 28482049 28482672 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697252 S 2026 0 1 "" nsv455985 2 28648233 28680932 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533423 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00863 nsv517970 2 28750178 28767871 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695382 S 2026 0 1 "" nsv521405 2 28770010 28788657 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698015 S 2026 0 1 "" nsv527580 2 28778852 28783336 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704041 S 2026 0 1 "" nsv2656 2 28813737 28838596 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9344 S 9 1 0 "" NA18517 nsv518751 2 28995501 29012293 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696200 S 2026 1 0 "" nsv817695 2 28995501 29075673 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416304 S 112 1 0 "" NA18855 dgv1163e1 2 29088147 30451080 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv711,essv6824,essv5637 M 271 0 0 "" NA18579 esv34904 2 29114000 30419000 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6979605,essv6990385,essv6986903,essv6979606,essv6979604 M 771 1 0 "" NA18579 dgv213n21 2 29125944 29159545 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv525563,nsv523661 M 2026 0 2 "" nsv525642 2 29141457 29150257 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701796 S 2026 1 0 "" nsv528652 2 29141457 29157584 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705285 S 2026 1 0 "" nsv2657 2 29156997 29201589 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4650 S 9 0 1 "" NA19129 nsv2658 2 29271102 29316080 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7476 S 9 0 1 "" NA12156 nsv438237 2 29323774 29338589 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470308 S 269 0 1 Samples from several populations that are part of the HapMap project. "" NA18579 nsv455997 2 29324962 29336366 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533432 S 1557 0 1 "" NINDS_74 nsv524336 2 29445816 29456427 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700243 S 2026 0 1 "" nsv525718 2 29450062 29450968 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701881 S 2026 0 1 "" nsv456008 2 29489056 29508139 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533436 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01310 nsv438248 2 29548691 29566604 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470319 S 269 0 1 Samples from several populations that are part of the HapMap project. "" NA18579 nsv9480 2 29552597 29557309 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28109 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19173 nsv817706 2 29553525 29554983 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416531,nssv1416532 M 112 0 2 "" NA19172,NA19173 nsv515557 2 29553525 29557869 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv665124,nssv693241,nssv676180,nssv680433,nssv672866,nssv664709,nssv703312,nssv663578,nssv663895,nssv668591,nssv684362,nssv664985,nssv660896,nssv665446,nssv659016,nssv666000,nssv681507,nssv659780,nssv661906,nssv659338,nssv684166,nssv661298,nssv684997,nssv676083,nssv692125,nssv654289,nssv673676,nssv671941 M 2026 0 28 "" nsv441750 2 29553529 29555873 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv2659 2 29746446 29779638 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1486 S 9 1 0 "" NA19240 nsv433197 2 29750434 29774566 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463078 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA18517 nsv833636 2 29775641 29932405 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441835 S 95 1 0 "" nsv2660 2 29865386 29900180 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4407 S 9 1 0 "" NA12878 nsv471776 2 29910856 29910964 CNV Loss Hinds et al 2006 16327809 Oligo_aCGH,PCR Custom Perlegen arrays nssv646057 M 2.906 95 "" nsv2661 2 30025955 30071864 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6825 S 9 0 1 "" NA12156 nsv438259 2 30074803 30092308 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470330 S 269 0 1 Samples from several populations that are part of the HapMap project. "" NA18579 nsv438270 2 30167263 30179693 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470341 S 269 0 1 Samples from several populations that are part of the HapMap project. "" NA18579 nsv438281 2 30318553 30329945 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470352 S 269 0 1 Samples from several populations that are part of the HapMap project. "" NA18579 nsv2662 2 30374556 30406785 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7477 S 9 0 1 "" NA12156 nsv833648 2 30417533 30607926 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441836 S 95 1 0 "" nsv2663 2 30434401 30479195 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7479 S 9 0 1 "" NA12156 nsv524988 2 30770387 30771658 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701017 S 2026 0 1 "" nsv215004 2 30776940 30781186 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233582 M 24 "" esv32718 2 30830197 30837843 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93268 S 51 1 0 "" 22170 nsv520269 2 30869788 30900026 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv681873,nssv662275 M 2026 2 0 "" nsv456019 2 30879879 30896501 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533442 S 1557 0 1 "" 1780854485_A nsv833659 2 30932223 31083156 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441838,nssv1441837 M 95 2 0 "" nsv523787 2 31338100 31339681 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699614 S 2026 0 1 "" nsv214337 2 31418182 31418235 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232915 M 24 "" nsv529012 2 31461408 31461831 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705723 S 2026 0 1 "" nsv456030 2 31510474 31731907 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533453 S 1557 1 0 "" 1780854095_A nsv525643 2 31607306 31620267 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701797 S 2026 1 0 "" nsv2664 2 31622068 31645413 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6826 S 9 0 1 "" NA12156 nsv2665 2 31675296 31707171 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10209 S 9 1 0 "" NA18956 nsv508080 2 31722038 31728038 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622337,nssv618537,nssv624267,nssv621520 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv508834 2 31954853 31999176 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619899 S 4 1 0 "" NA10860 nsv508718 2 32065866 32084461 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622807 S 4 0 1 "" NA18994 nsv833670 2 32207429 32393508 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441839 S 95 0 1 "" esv2422335 2 32323981 33112232 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161483 S 181 1 0 "" ND05052 nsv2667 2 32356461 32401406 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7480 S 9 0 1 "" NA12156 nsv528463 2 32447219 32453089 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705065 S 2026 0 1 "" esv2751888 2 32450887 33243200 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6988645,essv6986387,essv6983265,essv6983264,essv6983263 M 771 1 0 "" BEC_560 nsv516173 2 32453089 33241608 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696854,nssv689541,nssv693229,nssv667964,nssv666627,nssv703436,nssv687765,nssv702404,nssv678192,nssv697899 M 2026 5 5 "" dgv443n27 2 32545341 33241608 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv456119,nsv456085,nsv456074,nsv456096 M 1557 4 0 "" 1780854103_A,1787431166_A,HGDP00896,NINDS_147 nsv833681 2 32563981 32726759 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441841,nssv1441842 M 95 1 1 "" nsv833692 2 32590065 32764843 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441843 S 95 0 1 "" esv2422472 2 32590311 33122077 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161343 S 181 1 0 "" ND03627 nsv456108 2 32666637 32808706 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533512 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00548 nsv833703 2 32731705 32910742 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441844 S 95 0 1 "" nsv2668 2 32979955 33025325 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2258 S 9 0 1 "" NA18555 nsv508719 2 33001444 33014600 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620179 S 4 0 1 "" NA15510 nsv2669 2 33049915 33090765 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6827 S 9 0 1 "" NA12156 nsv2670 2 33129557 33143144 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2259 S 9 0 1 "" NA18555 esv33628 2 33169135 33367006 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100651 S 51 0 1 "" 21656 nsv518285 2 33414156 33420870 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695717 S 2026 0 1 "" nsv524337 2 33524493 33525838 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700244 S 2026 0 1 "" nsv528277 2 33524975 33525838 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704847 S 2026 1 0 "" nsv517737 2 33576001 33588091 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv677276,nssv687051,nssv653055,nssv664686,nssv667065,nssv682742,nssv672285,nssv662837,nssv658174,nssv666734,nssv677531,nssv670391 M 2026 0 12 "" dgv444n27 2 33670107 33677606 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv456141,nsv456130 M 1557 0 2 "" HGDP01003,NINDS_66 nsv433177 2 33670107 33677606 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463058 S 9 0 1 "" NA15510 nsv516338 2 33670107 33691882 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv667684,nssv668701,nssv683321,nssv687715,nssv670556,nssv692651,nssv682327,nssv687561,nssv663151,nssv671643,nssv669532,nssv672626,nssv686069,nssv668355,nssv661187,nssv662625,nssv660562,nssv681284,nssv656030,nssv681597,nssv673029 M 2026 0 21 "" nsv214925 2 33862806 33871086 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233503 M 24 "" nsv528984 2 33948078 33955077 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705684 S 2026 0 1 "" dgv445n27 2 33957896 34079382 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv456152,nsv456163 M 1557 0 2 "" HGDP00557,HGDP00578 nsv524602 2 33972995 33978408 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700563 S 2026 0 1 "" nsv528832 2 34010158 34039653 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705507 S 2026 1 0 "" nsv523688 2 34157156 34259631 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699494 S 2026 0 1 "" nsv456185 2 34214394 34224654 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533558 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00169 nsv833714 2 34259844 34416543 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441845,nssv1441848,nssv1441847,nssv1441846 M 95 4 0 "" nsv522079 2 34310389 34314995 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694853 S 2026 0 1 "" esv32820 2 34415965 34417729 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93906,essv94091,essv97067,essv101782,essv93729,essv98556,essv93418,essv99690,essv99284,essv97683,essv100227,essv100300,essv99413,essv94271 M 51 14 0 "" 21634,21802,21817,21909,21972,22085,22128,22217,22275,22278,22286,22300,22335,22394 nsv526661 2 34430845 34444166 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702989 S 2026 0 1 "" nsv215035 2 34435308 34437372 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233613 M 24 "" esv33506 2 34435548 34436228 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101438,essv98763,essv97546,essv101187,essv93841,essv100844,essv98250,essv94074,essv94411,essv96982,essv97945,essv97323,essv101735,essv92837,essv92754,essv93600,essv96128,essv97124,essv98560,essv100041,essv93561,essv93219,essv99663,essv94952,essv98058,essv99260,essv97687,essv100174,essv100353,essv99396,essv98387,essv96360,essv94190 M 51 33 0 "" 21603,21606,21616,21618,21634,21656,21772,21802,21808,21817,21837,21879,21909,21939,21944,21972,22007,22075,22085,22086,22128,22170,22217,22231,22259,22275,22278,22286,22300,22335,22352,22371,22394 esv32638 2 34462544 34463254 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv92823 S 51 1 0 "" 21944 nsv521324 2 34476237 34480427 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694433 S 2026 0 1 "" nsv833725 2 34530579 34699642 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441849,nssv1441853,nssv1441850 M 95 1 2 "" nsv817717 2 34545953 34553826 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417829,nssv1417828 M 112 2 0 "" NA18852,NA18853 essv2916 2 34596931 34638962 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19007 dgv1164e1 2 34596931 34666683 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv18479,essv20756,essv21618,esv1034 M 271 0 0 "" NA07348,NA07357,NA12156 nsv2671 2 34597269 34654452 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4408,nssv6828 M 9 0 2 "" NA12156,NA12878 esv32894 2 34600697 34601090 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv94185 S 51 1 0 "" 22394 nsv9491 2 34601818 34648397 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23386,nssv28797,nssv24281,nssv26715,nssv27164,nssv28159,nssv25714,nssv25943,nssv23982,nssv27630,nssv24891,nssv26568,nssv28013,nssv28003,nssv23394,nssv26860,nssv23701,nssv28482,nssv27418,nssv23993,nssv27622,nssv27159,nssv28433 M 31 22 1 Samples from several populations that are part of the HapMap project. "" NA07048,NA10847,NA12155,NA12802,NA18502,NA18504,NA18517,NA18537,NA18552,NA18563,NA18564,NA18572,NA18853,NA18860,NA18942,NA18972,NA18975,NA18980,NA19132,NA19144,NA19173,NA19221,NA19240 esv32622 2 34602062 34648173 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98691,essv97501,essv101231,essv93931,essv100670,essv98308,essv94720,essv94105,essv94431,essv96924,essv97951,essv97440,essv101664,essv99088,essv92828,essv93691,essv96224,essv98624,essv99977,essv93452,essv93402,essv99673,essv94865,essv98103,essv96457,essv99283,essv97651,essv100113,essv100582,essv100335,essv98523,essv96279,essv94201 M 51 0 33 "" 21606,21616,21618,21634,21656,21772,21791,21802,21808,21817,21837,21879,21909,21938,21944,21972,22007,22085,22086,22128,22170,22217,22231,22259,22261,22275,22278,22286,22298,22300,22352,22371,22394 nsv442694 2 34610970 34648708 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv508720 2 34618423 34657297 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617458 S 4 0 1 "" CHM nsv438292 2 34625378 34633210 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470463,nssv470452,nssv470474,nssv470430,nssv470374,nssv470485,nssv470408,nssv470519,nssv470363,nssv470441,nssv470385,nssv470496,nssv470396,nssv470419,nssv470530,nssv470507 M 269 0 16 Samples from several populations that are part of the HapMap project. "" NA06985,NA06991,NA06993,NA07019,NA10855,NA11994,NA12005,NA12155,NA12716,NA12751,NA12801,NA12812,NA12813,NA12865,NA12874,NA12891 nsv518535 2 34662196 34789584 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695979 S 2026 0 1 "" nsv2672 2 34686433 34730578 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4409 S 9 0 1 "" NA12878 nsv522238 2 34733641 34740029 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695019 S 2026 0 1 "" nsv9502 2 34738758 34742152 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28473,nssv27530 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18517,NA19240 nsv471777 2 34738832 34741397 CNV Loss Hinds et al 2006 16327809 Oligo_aCGH,PCR Custom Perlegen arrays nssv646058 M 0.085 95 "" nsv517738 2 34740029 34789584 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv655383,nssv681395,nssv653056,nssv665447,nssv663284,nssv663896,nssv659536,nssv666050,nssv690404 M 2026 0 9 "" nsv214081 2 34740740 34740998 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232659 M 24 "" nsv524038 2 34902588 34985258 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699902 S 2026 0 1 "" nsv516219 2 34934070 34945647 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv666876,nssv657022 M 2026 0 2 "" nsv215147 2 34946089 34946333 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233725 M 24 "" nsv516465 2 34972862 34985258 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv670477,nssv699818,nssv691019,nssv659747,nssv661519,nssv668554,nssv675004,nssv673605 M 2026 0 8 "" nsv441751 2 34975724 34978321 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv522582 2 34976897 34999886 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705969 S 2026 0 1 "" nsv517815 2 34985258 35004413 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695220 S 2026 0 1 "" nsv833736 2 35042769 35232953 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441854 S 95 1 0 "" dgv1165e1 2 35149394 35316635 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv15415,esv493 M 271 0 0 "" NA19203 nsv9513 2 35178922 35181479 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28522 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18972 nsv528847 2 35228104 35230663 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705526 S 2026 1 0 "" nsv528631 2 35299942 35300639 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705261 S 2026 0 1 "" nsv527036 2 35299942 35315662 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703412 S 2026 0 1 "" nsv524509 2 35299942 35327726 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700453 S 2026 0 1 "" nsv833747 2 35300284 35479864 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441855 S 95 0 1 "" nsv524168 2 35320782 35327726 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700048 S 2026 1 0 "" nsv519522 2 35337180 35773534 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696899 S 2026 1 0 "" esv33519 2 35402609 35403826 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98720 S 51 0 1 "" 21606 esv32795 2 35422641 35422699 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100002 S 51 0 1 "" 22086 dgv446n27 2 35431825 35546162 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv456219,nsv456207 M 1557 0 2 "" HGDP01254,HGDP01260 nsv2673 2 35472761 35549751 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9567,nssv1487 M 9 0 2 "" NA18507,NA19240 essv9564 2 35484210 35497580 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18501 dgv1166e1 2 35484210 35548857 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1258,essv14233 M 271 0 0 "" NA18913 nsv437283 2 35490683 35531167 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467164 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19240 nsv516995 2 35491342 35526095 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv663375,nssv670478,nssv659748,nssv681608,nssv653573,nssv690737,nssv687070,nssv657936,nssv661907,nssv690702,nssv676690,nssv664164,nssv669936,nssv671298,nssv689339,nssv652840,nssv656703,nssv672317,nssv680711,nssv677024,nssv684986,nssv684757,nssv663244,nssv680469,nssv687888,nssv666346,nssv661880,nssv684053,nssv693191,nssv665172,nssv677752,nssv665125,nssv669969,nssv678895,nssv657320,nssv686840,nssv658976 M 2026 0 37 "" nsv9524 2 35491400 35532101 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28827,nssv27640 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA19221,NA19240 nsv442700 2 35493646 35516821 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv456230 2 35493648 35513043 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533593 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00941 dgv19n14 2 35493648 35526095 CNV Loss Cooper et al 2008 18776910 SNP_array nsv433200,nsv433198 M 9 0 2 "" NA18507,NA19240 dgv447n27 2 35493648 35526095 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv456241,nsv456252 M 1557 0 2 "" HGDP01283,HGDP01405 nsv817729 2 35493648 35526095 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416826,nssv1416827 M 112 0 2 "" NA19239,NA19240 dgv1167e1 2 35494119 35534311 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv14003,essv16176 M 271 0 0 "" NA18506,NA19222 nsv438304 2 35497286 35526516 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470596,nssv470585,nssv470618,nssv470607,nssv470574,nssv470563,nssv470552,nssv470541 M 269 0 8 Samples from several populations that are part of the HapMap project. "" NA18501,NA18506,NA18507,NA18913,NA19221,NA19222,NA19239,NA19240 nsv523461 2 35614184 35624960 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699219 S 2026 0 1 "" nsv518450 2 35623512 35691009 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695888 S 2026 0 1 "" nsv214580 2 35683918 35683970 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233158 M 24 "" nsv2674 2 35712506 35757393 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7481 S 9 0 1 "" NA12156 nsv519867 2 35729758 35999293 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699422,nssv698222,nssv694581,nssv704182,nssv676691,nssv686276,nssv659176 M 2026 0 7 "" dgv58n68 2 35733011 35943737 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH nsv833770,nsv833759 M 95 6 0 "" dgv448n27 2 35748814 35999293 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv456274,nsv456285,nsv456263 M 1557 0 3 "" 1780854061_A,1782681555_A,HGDP00155 nsv508835 2 35770138 35800828 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623865 S 4 1 0 "" NA18994 nsv2675 2 35775323 35798741 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6830 S 9 1 0 "" NA12156 dgv1168e1 2 35775617 35943739 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv9983,essv20433,essv7168 M 271 0 0 "" NA10830,NA18547,NA19099 dgv1169e1 2 35775617 36031232 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv20262,essv15035,essv16841,esv484,essv13912,essv17202,essv2024,essv16284,essv14354 M 271 0 0 "" NA12144,NA18854,NA18949,NA19129,NA19161,NA19171,NA19194,NA19205 nsv9535 2 35780959 35797740 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27289 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18942 nsv456296 2 35827779 35848620 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533640 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00738 nsv456307 2 35840001 35858722 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533651 S 1557 0 1 "" 1780862358_A nsv9547 2 35845464 35852330 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27294 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19132 nsv456318 2 35847177 35861439 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533661 S 1557 0 1 "" 1798860567_A nsv2676 2 35875231 35941505 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6831,nssv4410,nssv1488,nssv9345,nssv5780 M 9 0 5 "" NA12156,NA12878,NA18517,NA19129,NA19240 nsv9558 2 35879425 35909821 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27730,nssv28209,nssv28513,nssv26168,nssv23988,nssv25171,nssv26727,nssv23696,nssv25701,nssv26855,nssv28088,nssv28592,nssv24276,nssv27738,nssv28098,nssv25445,nssv27748,nssv27916,nssv24002,nssv24287,nssv27414,nssv27009,nssv27409 M 31 0 23 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10847,NA10863,NA12155,NA12740,NA12872,NA18502,NA18504,NA18517,NA18537,NA18552,NA18564,NA18853,NA18860,NA18942,NA18972,NA18975,NA18980,NA19132,NA19173,NA19240 nsv508721 2 35879705 35901870 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619030 S 4 0 1 "" NA10860 nsv442704 2 35889441 35899598 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" esv33640 2 35899431 35902465 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97552,essv101230,essv98229,essv94324,essv96898,essv97913,essv95743,essv97290,essv98995,essv92929,essv97137,essv98570,essv100061,essv97976,essv97660,essv100320,essv98464,essv96348 M 51 0 18 "" 21616,21618,21772,21808,21817,21837,21841,21879,21938,21939,22075,22085,22086,22259,22278,22300,22352,22371 dgv214n21 2 35909968 36024773 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv524113,nsv523074 M 2026 0 2 "" nsv456330 2 35931588 36010612 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533671 S 1557 1 0 "" 1780854439_A nsv9569 2 35962001 35964790 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27019,nssv28857,nssv28632,nssv27521,nssv27526 M 31 0 5 Samples from several populations that are part of the HapMap project. "" NA18502,NA18942,NA18972,NA19132,NA19221 nsv833781 2 35994123 36147213 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441862 S 95 1 0 "" nsv508139 2 36094441 36132371 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622808 S 4 0 1 "" NA18994 nsv2678 2 36102648 36141478 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7482 S 9 0 1 "" NA12156 nsv456341 2 36135703 36159967 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533681 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00935 dgv1170e1 2 36155103 36502309 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv618,essv23948,essv25112 M 271 0 0 "" NA12814 nsv9580 2 36195345 36197230 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24282 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA12872 nsv213769 2 36214550 36214615 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232347 M 24 "" esv34222 2 36221313 36480700 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6989058,essv6978996,essv6978997,essv6988083,essv6988084 M 771 0 1 "" NA12814 nsv2679 2 36222253 36260720 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv11010,nssv5781 M 9 0 2 "" NA15510,NA19129 nsv168 2 36243400 36260080 CNV Loss Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv168 S 1 0 1 "" NA15510 nsv9591 2 36243469 36257555 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27024,nssv25182,nssv27631,nssv26867,nssv24577 M 31 0 5 Samples from several populations that are part of the HapMap project. "" NA18552,NA18563,NA18942,NA18975,NA19007 nsv442708 2 36248270 36251205 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv518004 2 36257656 36480665 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695416 S 2026 1 0 "" nsv833792 2 36282059 36461064 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441864 S 95 1 0 "" essv5830 2 36287067 36364113 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18524 esv34674 2 36295117 36334000 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6979303,essv6979302,essv6988148 M 771 0 1 "" NA18524 nsv9602 2 36300432 36301866 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27739 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18942 nsv213651 2 36301150 36301951 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232229 M 24 "" nsv9613 2 36303153 36305295 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28138,nssv27636 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA12155,NA19132 nsv508837 2 36457475 36486370 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619900,nssv621164 M 4 2 0 "" NA10860,NA15510 nsv2680 2 36476569 36507382 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4411,nssv5782,nssv2260 M 9 3 0 "" NA12878,NA18555,NA19129 nsv833803 2 36500716 36657430 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441871,nssv1441869,nssv1441870,nssv1441865,nssv1441867,nssv1441868,nssv1441866,nssv1441876,nssv1441872,nssv1441875,nssv1441873,nssv1441877,nssv1441878,nssv1441879 M 95 14 0 "" dgv1171e1 2 36534557 36568956 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv8980,esv1145 M 271 0 0 "" NA19139 nsv213151 2 36644359 36644612 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv231729 M 24 "" nsv2681 2 36734641 36759822 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5783 S 9 0 1 "" NA19129 nsv523146 2 36760871 36809560 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698854 S 2026 0 1 "" nsv526283 2 36762915 36792482 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702562 S 2026 0 1 "" nsv507005 2 36774847 36780847 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617557,nssv621992 M 4 2 0 "" CHM,NA10860 nsv525132 2 36871137 36876402 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701200 S 2026 0 1 "" nsv2682 2 36927201 36972083 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7483 S 9 0 1 "" NA12156 dgv1172e1 2 36959004 36960602 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv942,essv17680 M 271 0 0 "" NA10835 nsv456363 2 37020932 37146975 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533696 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00476 nsv2683 2 37312129 37315485 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5784 S 9 1 0 "" NA19129 nsv2684 2 37342150 37375084 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4412,nssv7485 M 9 2 0 "" NA12156,NA12878 nsv2685 2 37461747 37506574 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7486 S 9 0 1 "" NA12156 nsv2686 2 37486318 37519337 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5785 S 9 1 0 "" NA19129 nsv833814 2 37554783 37751898 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441880 S 95 1 0 "" nsv456374 2 37581138 37779865 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533707 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00880 nsv2687 2 37671995 37706119 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7487 S 9 1 0 "" NA12156 dgv1173e1 2 37708305 38050590 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv16234,essv12297,esv643,essv23076,essv361 M 271 0 0 "" NA12812,NA18971,NA19138,NA19161 nsv833825 2 37719820 37897568 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441881 S 95 1 0 "" nsv508081 2 37796445 37802445 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621521,nssv622338 M 4 0 2 "" NA10860,NA15510 dgv1174e1 2 37821038 37916959 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv10711,essv20976,essv13820 M 271 0 0 "" NA10863,NA18508,NA18853 dgv1175e1 2 37847789 37916082 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv19847,essv5610,essv19810,essv20541,essv6407,essv20495 M 271 0 0 "" NA11995,NA12234,NA12864,NA12874,NA18545,NA18593 esv32731 2 37861413 37926062 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101607,essv101093,essv94822,essv101392,essv97313,essv92681,essv97171,essv98599,essv96059,essv93525,essv99597,essv92554,essv96574,essv99144,essv100479,essv99386,essv96322 M 51 6 11 "" 21603,21693,21791,21805,21879,21944,22075,22085,22127,22128,22217,22233,22261,22275,22298,22335,22371 nsv9624 2 37868568 37914909 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27154,nssv28148,nssv26374,nssv27830,nssv28583,nssv27744,nssv23997,nssv25451,nssv25462,nssv24566,nssv27838,nssv28259,nssv24572,nssv28672,nssv27031,nssv25704,nssv25946 M 31 6 11 Samples from several populations that are part of the HapMap project. "" NA07048,NA10847,NA10863,NA12740,NA12872,NA18504,NA18517,NA18537,NA18563,NA18564,NA18853,NA18860,NA18972,NA18975,NA19007,NA19132,NA19173 dgv1176e1 2 37872363 37901730 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1302,essv17678,essv2140,essv19037,essv11596,essv19483,essv22289,essv24032,essv19836 M 271 0 0 "" NA07034,NA10835,NA10847,NA12750,NA12762,NA12873,NA18978,NA18980,NA19207 dgv1177e1 2 37872553 37915136 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv8721,essv24112 M 271 0 0 "" NA07048,NA19200 nsv213183 2 37875039 37875343 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv231761 M 24 "" nsv833836 2 37877994 38025728 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441884,nssv1441883,nssv1441882 M 95 3 0 "" nsv214183 2 37878035 37878035 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232761 M 24 "" dgv1178e1 2 37897382 37901524 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv23299,essv19335 M 271 0 0 "" NA12006,NA12872 essv25162 2 37897382 37915136 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA11839 essv14212 2 37898775 37901092 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18913 nsv9635 2 38043690 38045933 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27933 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18860 nsv516007 2 38064358 38064470 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv687108,nssv667289,nssv671057,nssv661959,nssv691874,nssv655404,nssv656892,nssv673406,nssv688469,nssv651823,nssv674166,nssv655002,nssv687027,nssv675702,nssv691080,nssv674093,nssv672181,nssv667947,nssv652408,nssv656056,nssv655365,nssv694013,nssv659430,nssv685536,nssv678600,nssv674683,nssv669434,nssv674851,nssv672242,nssv663001,nssv658350,nssv676360,nssv692246,nssv680839,nssv657187,nssv682134,nssv659269,nssv663285,nssv686812,nssv674752,nssv661843,nssv672989,nssv673345,nssv670653,nssv655691,nssv669155,nssv682328,nssv698668,nssv666759,nssv669805,nssv674235,nssv665869,nssv670965,nssv690289,nssv658383,nssv652936,nssv669937,nssv673710,nssv657004,nssv673829,nssv693881,nssv682705,nssv675603,nssv664143,nssv654700,nssv664383,nssv682493,nssv688912,nssv664431,nssv679338,nssv672767,nssv683168,nssv666259,nssv692428,nssv662410,nssv677733,nssv676867,nssv686680,nssv691984,nssv676750,nssv669970,nssv693638,nssv656784,nssv670783,nssv652177,nssv692894,nssv658977,nssv681598,nssv679501 M 2026 1 88 "" nsv9646 2 38269962 38993840 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27848 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19240 nsv2689 2 38320638 38351671 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv11011 S 9 1 0 "" NA15510 nsv522806 2 38326192 38359174 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698451 S 2026 1 0 "" nsv528297 2 38418576 38420434 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704872 S 2026 0 1 "" nsv2690 2 38558998 38566075 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3015 S 9 1 0 "" NA18555 nsv520646 2 38568532 38571308 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697535 S 2026 0 1 "" nsv522259 2 38579987 38647741 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695039 S 2026 0 1 "" nsv527429 2 38587189 38587614 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703868 S 2026 0 1 "" nsv213192 2 38627409 38629611 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv231770 M 24 "" nsv526489 2 38643425 38647741 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702798 S 2026 0 1 "" nsv527492 2 38664988 38671448 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703940 S 2026 0 1 "" nsv2691 2 38671122 38696965 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10210 S 9 1 0 "" NA18956 nsv528170 2 38764746 38765675 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704719 S 2026 0 1 "" nsv442713 2 38785450 38788251 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv516043 2 38785828 38792757 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv665870,nssv683082,nssv674028,nssv660935,nssv659297,nssv676219,nssv683894,nssv662203,nssv677241 M 2026 0 9 "" nsv817740 2 38785828 38792757 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418459,nssv1418470 M 112 0 2 "" NA19141,NA19142 nsv213847 2 38806162 38806489 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232425 M 24 "" nsv441752 2 38867513 38883932 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv518220 2 38868598 38876212 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694213 S 2026 1 0 "" nsv817751 2 38868598 38876212 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416031,nssv1415613 M 112 2 0 "" NA12249,NA12812 nsv2692 2 38977419 39023522 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6832 S 9 0 1 "" NA12156 nsv833847 2 39322413 39516291 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441886 S 95 0 1 "" nsv2693 2 39380292 39425451 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7488 S 9 0 1 "" NA12156 nsv2694 2 39443916 39479029 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1489 S 9 1 0 "" NA19240 nsv2695 2 39554872 39599666 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7489 S 9 0 1 "" NA12156 nsv215442 2 39588285 39593534 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv234020 M 24 "" nsv833858 2 39596134 39768149 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441887 S 95 1 0 "" nsv833870 2 39748673 39937675 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441888 S 95 1 0 "" nsv833881 2 39826209 39978907 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441889 S 95 0 1 "" nsv2696 2 39900032 39944939 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7490 S 9 0 1 "" NA12156 nsv507006 2 39964845 39970845 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620714,nssv623332 M 4 2 0 "" NA15510,NA18994 dgv449n27 2 40063533 40120316 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv456385,nsv456407 M 1557 0 2 "" HGDP00146,HGDP00428 nsv2697 2 40082308 40115001 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5786 S 9 1 0 "" NA19129 nsv833892 2 40100436 40275131 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441890 S 95 0 1 "" nsv519483 2 40118989 40147239 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694331 S 2026 0 1 "" dgv215n21 2 40330037 40363375 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv526074,nsv526425 M 2026 0 2 "" nsv524586 2 40359238 40409152 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700544 S 2026 0 1 "" dgv1179e1 2 40459598 40645427 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv357,essv19955 M 271 0 0 "" NA12813 nsv516330 2 40487998 40491599 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv667622,nssv691505,nssv672551 M 2026 0 3 "" nsv2698 2 40506136 40540710 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3016 S 9 1 0 "" NA18555 nsv9658 2 40523660 40527371 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28623 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18517 nsv2700 2 40579112 40624456 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6833 S 9 0 1 "" NA12156 nsv441753 2 40675818 40680553 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv456418 2 40717078 40760201 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533744 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01237 nsv528865 2 40717078 41130461 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705545 S 2026 0 1 "" nsv456429 2 40734677 40808036 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533752 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00710 nsv456441 2 40794053 40976475 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533760 S 1557 0 1 "" 1780862310_A nsv518438 2 40794070 40796298 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695874 S 2026 0 1 "" nsv456452 2 40802067 40900712 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533766 S 1557 0 1 "" 1780854449_A esv34871 2 40833749 40863318 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6988254,essv6979834 M 771 0 1 "" NA18637 nsv441754 2 40839026 40861253 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv1180e1 2 40842372 40878370 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv951,essv6458,essv6433,essv7445 M 271 0 0 "" NA18582,NA18592,NA18637 nsv456463 2 40842709 40851962 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv533773 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01193 nsv526113 2 40843571 40851962 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702362 S 2026 0 1 "" nsv9669 2 40863378 40871435 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27844 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19132 nsv214500 2 40889802 40890133 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233078 M 24 "" nsv518293 2 40970816 41173643 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695724 S 2026 1 0 "" nsv2701 2 40985285 41019667 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1490 S 9 1 0 "" NA19240 nsv520704 2 40991484 41018671 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697567 S 2026 1 0 "" nsv507007 2 41102642 41108642 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617558,nssv621993 M 4 2 0 "" CHM,NA10860 nsv518255 2 41111264 41157152 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695685 S 2026 0 1 "" nsv523251 2 41125275 41153920 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698980 S 2026 0 1 "" dgv450n27 2 41131193 41157152 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv456518,nsv456529,nsv456496,nsv456507,nsv456485 M 1557 0 5 "" 1780854444_A,HGDP00108,NINDS_169,NINDS_212,NINDS_236 nsv515841 2 41131193 41187223 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv673087,nssv675445,nssv673949,nssv685489,nssv662626,nssv691081,nssv679408,nssv693814,nssv667975,nssv652472,nssv673790,nssv660091,nssv688224,nssv652049,nssv686955,nssv661683,nssv691516,nssv669774,nssv688886,nssv678622,nssv688492,nssv657499,nssv660936,nssv663855,nssv652100,nssv676035,nssv674412,nssv664063,nssv662253,nssv667447,nssv653357,nssv657991,nssv684621,nssv666477,nssv691113,nssv672182,nssv680229,nssv661908,nssv676057,nssv684026,nssv666717,nssv680798,nssv677025,nssv677697,nssv669971,nssv677194,nssv665667,nssv652178,nssv675579,nssv656572,nssv653083,nssv666877,nssv691383,nssv691908,nssv672318,nssv672566,nssv653032,nssv682232,nssv670047,nssv652432,nssv682867,nssv657397,nssv669834,nssv661299,nssv652691,nssv680245,nssv676282,nssv665416,nssv688913,nssv654446,nssv678011,nssv690588,nssv661149,nssv681508,nssv660897,nssv687175,nssv672552,nssv659749,nssv680973,nssv685712,nssv669303,nssv669752,nssv673206,nssv657920,nssv692710,nssv674607,nssv670885,nssv655384,nssv655183,nssv674591,nssv653259,nssv679855,nssv660626,nssv672665,nssv677304,nssv693679,nssv652841,nssv691727,nssv690311,nssv686294,nssv659201,nssv657479,nssv686716,nssv682985,nssv673732,nssv689917,nssv666651,nssv692348,nssv674254,nssv659822,nssv676424,nssv654057,nssv688154,nssv692807,nssv688451,nssv658328,nssv681998,nssv665173,nssv657443,nssv691754,nssv671152,nssv692404,nssv673567,nssv678302,nssv665929,nssv668975,nssv689760,nssv684719,nssv685269,nssv655003,nssv692080,nssv662019,nssv678193,nssv654181,nssv663263,nssv691062,nssv673711,nssv688049,nssv687028,nssv655331,nssv690184,nssv681609,nssv656144,nssv663128,nssv666347,nssv688840,nssv669052,nssv675846,nssv680086,nssv667428,nssv688174,nssv666674,nssv654805,nssv689266,nssv661636,nssv679676,nssv664353,nssv672627,nssv667880,nssv670123,nssv680629,nssv679428,nssv669938,nssv668315,nssv677772,nssv680396,nssv695658,nssv659102,nssv652384,nssv665126,nssv662685,nssv662229,nssv688795,nssv664036,nssv663024,nssv663760,nssv691608,nssv662428,nssv652978,nssv691793,nssv681396,nssv670756,nssv687214,nssv681163,nssv663559,nssv658539,nssv693499,nssv662165,nssv692546,nssv670316,nssv671005,nssv668555,nssv660275,nssv674981,nssv692379,nssv668230,nssv681123,nssv690913,nssv659664,nssv674309,nssv685119,nssv664899,nssv671644,nssv682883,nssv671092,nssv686004,nssv661469,nssv654257,nssv676960,nssv672138,nssv663303,nssv659612,nssv676990,nssv658675,nssv680322,nssv664710,nssv680859,nssv678647,nssv686554,nssv657345,nssv664673,nssv675174,nssv666194,nssv670207,nssv661324,nssv678848,nssv661564,nssv666001,nssv682450,nssv690133,nssv672867,nssv665631,nssv689508,nssv682753,nssv685046,nssv672286,nssv671125,nssv662846,nssv656009,nssv668512,nssv663897,nssv694181,nssv689360,nssv655472,nssv693906,nssv654428,nssv684150,nssv689070,nssv675061,nssv657720,nssv668011,nssv681532,nssv679300,nssv651944,nssv682768,nssv660835,nssv681696,nssv691943,nssv687963,nssv662764,nssv666970,nssv683083,nssv666154,nssv652718,nssv685962,nssv679085,nssv682494,nssv671626,nssv691652,nssv671265,nssv692632,nssv663798,nssv666787,nssv687524,nssv681043,nssv683839,nssv656057,nssv664368,nssv664565,nssv681083,nssv683224,nssv675670,nssv678170,nssv691506,nssv675261,nssv656653,nssv657254,nssv673677,nssv652626,nssv686024,nssv666826,nssv663947,nssv688383,nssv659990,nssv671851,nssv671021,nssv688071,nssv693746,nssv674218,nssv675149,nssv687586,nssv689554,nssv677532,nssv658657,nssv684363,nssv653785,nssv686277,nssv676341,nssv701656,nssv698915,nssv680305,nssv660307,nssv681627,nssv689340,nssv653703,nssv675411,nssv665732,nssv687244,nssv689581,nssv684934,nssv673281,nssv682743,nssv662048,nssv661984,nssv655149,nssv680452,nssv660471,nssv659144,nssv655405,nssv659359,nssv684649,nssv674508,nssv689217,nssv653923,nssv652197,nssv689288,nssv688283,nssv681358,nssv680840,nssv678675,nssv657873,nssv675367,nssv667090,nssv660058,nssv655608,nssv673830,nssv668851,nssv679712,nssv690013,nssv668634 M 2026 9 341 "" dgv451n27 2 41140239 41157152 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv456751,nsv456552,nsv456685,nsv456629,nsv456718,nsv456596,nsv456563,nsv456707,nsv456640,nsv456651,nsv456618,nsv456740,nsv456729,nsv456696,nsv456775,nsv456574,nsv456762,nsv456607,nsv456540,nsv456585,nsv456663 M 1557 0 21 "" 1780854418_A,1780854512_A,1780862459_A,1780862539_A,1782681115_A,1798860336_A,HGDP00060,HGDP00302,HGDP01069,HGDP01100,HGDP01189,HGDP01220,HGDP01245,HGDP01254,HGDP01267,HGDP01277,HGDP01284,HGDP01321,HGDP01357,NINDS_167,NINDS_168 dgv452n27 2 41140239 41167193 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv456786,nsv456674 M 1557 0 2 "" HGDP00625,NINDS_166 dgv58n17 2 41149570 41164716 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437284,nsv437285,nsv437286 M 60 0 3 "" NA19094,NA19139,NA19142 nsv9680 2 41149866 41162709 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27939,nssv26171,nssv28309,nssv27925,nssv27149,nssv24291 M 31 0 6 Samples from several populations that are part of the HapMap project. "" NA10863,NA18502,NA18504,NA18853,NA19132,NA19173 nsv442718 2 41150094 41157538 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv453n27 2 41150295 41157152 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv456863,nsv456874,nsv456919,nsv456852,nsv456841,nsv457074,nsv457085,nsv456808,nsv456886,nsv456908,nsv457096,nsv456830,nsv456819,nsv456897 M 1557 0 14 "" 1780854179_A,1780854436_A,1780854449_A,1780862300_A,HGDP00049,HGDP00587,HGDP00908,HGDP00909,HGDP01166,HGDP01263,HGDP01285,HGDP01419,NINDS_115,NINDS_181 nsv817762 2 41150295 41157152 CNV Gain+Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417163,nssv1418481,nssv1416905,nssv1418254,nssv1417349,nssv1416132,nssv1417831,nssv1416533,nssv1418492,nssv1418503,nssv1416904,nssv1416705,nssv1417830,nssv1417265,nssv1416534,nssv1418428,nssv1418429,nssv1416032,nssv1416131,nssv1418253,nssv1415614 M 112 1 20 "" NA12249,NA12812,NA12891,NA12892,NA18547,NA18593,NA18612,NA18853,NA18854,NA19093,NA19094,NA19137,NA19139,NA19140,NA19141,NA19142,NA19159,NA19172,NA19173,NA19192,NA19193 nsv817773 2 41150295 41167193 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417183,nssv1417172 M 112 0 2 "" NA10863,NA12264 dgv454n27 2 41150295 41174154 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv456997,nsv456963,nsv456941,nsv456974,nsv457041,nsv457063,nsv457019,nsv457030,nsv457052,nsv457008,nsv456952,nsv456985,nsv456930 M 1557 0 13 "" 1780854009_A,1780854439_A,1780854536_A,1780854594_A,1780862470_A,1782681112_A,HGDP00608,HGDP00644,HGDP00703,HGDP00881,HGDP00924,HGDP01164,NINDS_195 nsv438315 2 41150761 41158505 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470674,nssv470663,nssv470641,nssv470685,nssv470652,nssv470630 M 269 0 5 Samples from several populations that are part of the HapMap project. "" NA18504,NA18612,NA18862,NA19130,NA19201 esv32630 2 41151165 41159816 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98705,essv93963,essv101371,essv101768,essv96446,essv97668,essv100512 M 51 0 7 "" 21606,21634,21805,21909,22261,22278,22298 nsv457108 2 41153920 41157152 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534374 S 1557 0 1 "" 1782681286_A nsv214690 2 41176435 41179346 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233268 M 24 "" nsv817784 2 41243692 41251683 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417194 S 112 1 0 "" NA12234 nsv457119 2 41285947 41333245 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534380 S 1557 0 1 "" 1798860084_A nsv214819 2 41572342 41572565 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233397 M 24 "" nsv457130 2 41581931 41677606 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534389 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00120 nsv2702 2 41684162 41732553 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6834 S 9 0 1 "" NA12156 nsv213656 2 41706002 41712536 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232234 M 24 "" nsv523959 2 41725825 41761446 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699809 S 2026 0 1 "" nsv2703 2 41728318 41747767 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4413 S 9 1 0 "" NA12878 nsv527845 2 41797424 41812547 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704343 S 2026 0 1 "" nsv527978 2 41832079 41837087 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704494 S 2026 0 1 "" nsv521044 2 41846453 41851859 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694414 S 2026 0 1 "" nsv508140 2 41877954 41916350 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620180,nssv617459 M 4 0 2 "" CHM,NA15510 nsv523175 2 41922811 41930051 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698887 S 2026 0 1 "" nsv179 2 41958467 41976417 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv179 S 1 1 0 "" NA15510 nsv2704 2 41958467 41976417 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv11012 S 9 1 0 "" NA15510 nsv457141 2 41980949 42113259 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534399 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01078 nsv833903 2 42091581 42273379 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441891 S 95 1 0 "" nsv2705 2 42311196 42345550 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4414 S 9 1 0 "" NA12878 nsv2706 2 42336426 42381387 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7491 S 9 0 1 "" NA12156 nsv441755 2 42359008 42364264 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv521335 2 42374531 42379285 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694434 S 2026 1 0 "" nsv525133 2 42399696 42411900 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701201 S 2026 1 0 "" nsv524679 2 42488821 42715016 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700650 S 2026 0 1 "" nsv817795 2 42889883 42907499 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416306 S 112 1 0 "" NA18855 nsv519877 2 42890087 42932565 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv691333,nssv701229,nssv659270,nssv700823 M 2026 0 4 "" nsv457152 2 42891720 42925940 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534408 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00656 nsv517850 2 42949323 42952228 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695255 S 2026 0 1 "" esv2751889 2 43005418 43053420 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6982845,essv6982846 M 771 0 1 "" BEC_604 nsv214516 2 43040932 43041262 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233094 M 24 "" nsv525307 2 43128186 43159270 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701414 S 2026 0 1 "" nsv521421 2 43158724 43159270 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698031 S 2026 0 1 "" nsv817806 2 43295888 43308827 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417742 S 112 0 1 "" NA19003 nsv213495 2 43322368 43322368 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232073 M 24 "" nsv527482 2 43324765 43333112 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703929 S 2026 0 1 "" nsv457163 2 43396207 43465600 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534415 S 1557 0 1 "" NINDS_102 nsv525157 2 43414128 43449660 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701230 S 2026 0 1 "" nsv520247 2 43546573 43581834 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697306 S 2026 0 1 "" nsv2707 2 43696808 43725529 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10211 S 9 1 0 "" NA18956 nsv2708 2 43698087 43740762 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7492 S 9 0 1 "" NA12156 dgv148e55 2 43715079 43907142 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv2751891,esv2751890,esv2751892 M 771 0 3 "" BEC_305,BEC_557,BEC_642 dgv59n68 2 43758635 44010375 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH nsv833914,nsv833925 M 95 2 0 "" nsv2709 2 43784537 43808539 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5787 S 9 0 1 "" NA19129 nsv507008 2 43835055 43841055 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617559,nssv621994 M 4 2 0 "" CHM,NA10860 nsv525332 2 43863522 43865315 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701445 S 2026 0 1 "" nsv457174 2 43901192 44284560 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534419 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01104 nsv519633 2 43983394 43990655 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv683618,nssv687406,nssv657255,nssv682518,nssv698339,nssv663002,nssv671713,nssv658823 M 2026 0 8 "" dgv216n21 2 43983394 44012500 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv520346,nsv521611 M 2026 0 2 "" nsv516120 2 44002709 44010506 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv666760,nssv666321 M 2026 0 2 "" nsv817817 2 44144355 44149525 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416307 S 112 1 0 "" NA18855 nsv521949 2 44144355 44170012 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694718 S 2026 1 0 "" nsv526607 2 44193976 44195394 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702927 S 2026 0 1 "" nsv519938 2 44230303 44231384 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv659562,nssv690893,nssv662166 M 2026 0 3 "" nsv507009 2 44237347 44243347 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623333,nssv617560,nssv620715 M 4 3 0 "" CHM,NA15510,NA18994 nsv457185 2 44253627 44284560 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534429 S 1557 0 1 "" 1780854255_A esv2751893 2 44319636 44459933 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6989664,essv6982660,essv6982659 M 771 0 1 "" BEC_576 nsv833936 2 44328043 44500645 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441894 S 95 0 1 "" nsv508082 2 44375789 44381789 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618538,nssv622339,nssv624268 M 4 0 3 "" CHM,NA10860,NA18994 nsv9691 2 44377587 44381699 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25949,nssv27139,nssv24881,nssv27161,nssv24296,nssv24892,nssv27999,nssv26378 M 31 0 8 Samples from several populations that are part of the HapMap project. "" NA07029,NA10839,NA10847,NA11830,NA12740,NA18552,NA18975,NA18980 nsv471778 2 44378744 44380538 CNV Loss Hinds et al 2006 16327809 Oligo_aCGH,PCR Custom Perlegen arrays nssv646059 M 0.547 95 "" nsv457196 2 44415780 44478523 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534438 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01306 nsv521399 2 44418864 44456565 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698010 S 2026 0 1 "" nsv833947 2 44479929 44654046 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441897,nssv1441898,nssv1441895 M 95 3 0 "" nsv214031 2 44547891 44547978 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232609 M 24 "" nsv522689 2 44614629 44632403 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv706099 S 2026 0 1 "" nsv214988 2 44695239 44695559 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233566 M 24 "" nsv441756 2 44738490 44740386 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv507010 2 44767235 44773235 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617561 S 4 1 0 "" CHM nsv457207 2 45069889 45105940 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534445 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00774 nsv526386 2 45072949 45077040 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702684 S 2026 0 1 "" nsv526534 2 45072949 45123890 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702847 S 2026 0 1 "" nsv2711 2 45111960 45156695 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7493 S 9 0 1 "" NA12156 nsv523494 2 45204731 45301634 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699263 S 2026 0 1 "" nsv457219 2 45210071 45247064 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534454 S 1557 1 0 "" 1780862547_A dgv455n27 2 45222970 45243979 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv457241,nsv457230 M 1557 2 0 "" HGDP00133,HGDP00183 nsv457252 2 45243979 45259928 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534481 S 1557 1 0 "" 1780862067_A nsv520318 2 45278282 45280341 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv662860,nssv692450,nssv672243,nssv679233,nssv690134 M 2026 5 0 "" esv2751894 2 45280341 45911470 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6985831,essv6985832,essv6985833,essv6987276,essv6987275 M 771 1 0 "" SPC_63 nsv2712 2 45284590 45316839 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2261 S 9 1 0 "" NA18555 nsv526205 2 45316134 45316700 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702468 S 2026 0 1 "" dgv456n27 2 45391793 45453037 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv457274,nsv457263 M 1557 0 2 "" 1798860279_A,HGDP01373 nsv214834 2 45452595 45457854 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233412 M 24 "" nsv833958 2 45464888 45624136 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441899 S 95 1 0 "" dgv217n21 2 45601966 45734674 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv526369,nsv524130 M 2026 0 2 "" nsv457285 2 45611721 45663865 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534511 S 1557 0 1 "" NINDS_145 nsv519046 2 45657382 45663865 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696517 S 2026 0 1 "" nsv521080 2 45667320 45694978 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv691046,nssv681434 M 2026 0 2 "" nsv520955 2 45667320 45743188 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697707 S 2026 0 1 "" nsv457296 2 45686199 45748432 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534518 S 1557 0 1 "" NINDS_133 nsv528112 2 45856180 45857749 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704654 S 2026 0 1 "" nsv2713 2 45915271 45944694 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7494 S 9 0 1 "" NA12156 nsv457318 2 45933257 45964148 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534530 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00756 nsv518264 2 46164212 46165613 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695695 S 2026 0 1 "" nsv213629 2 46224349 46224599 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232207 M 24 "" nsv517015 2 46232531 46234256 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv654540,nssv653619,nssv693747,nssv652512,nssv693854,nssv661106,nssv677618,nssv671373,nssv693209,nssv687134,nssv657590 M 2026 0 11 "" nsv521205 2 46275458 46277571 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv688202,nssv685047 M 2026 0 2 "" nsv515653 2 46329297 46331898 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv681195,nssv664255 M 2026 0 2 "" dgv1181e1 2 46444463 46785802 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv20783,esv815 M 271 0 0 "" NA12146 nsv2714 2 46503365 46534963 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6835 S 9 1 0 "" NA12156 dgv149e55 2 46517310 46730643 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv34937,esv34650 M 771 0 2 "" NA10847,NA12146 essv19828 2 46525886 46668082 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA10847 nsv437435 2 46548618 46675238 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467316 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA10847 nsv457330 2 46548732 46572403 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534539 S 1557 0 1 "" NINDS_163 essv21584 2 46553278 46651334 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12146 nsv9702 2 46579757 46657391 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27839,nssv25161 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA10847,NA18942 nsv817828 2 46581797 46650808 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418346,nssv1418345 M 112 0 2 "" NA10847,NA12146 nsv519216 2 46595334 46634870 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696705 S 2026 1 0 "" nsv2715 2 46604024 46638739 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3017 S 9 1 0 "" NA18555 nsv471779 2 46605896 46609344 CNV Loss Hinds et al 2006 16327809 Oligo_aCGH,PCR Custom Perlegen arrays nssv646060 M 0.021 95 "" nsv441757 2 46607749 46609335 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" esv33715 2 46621415 46624443 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97650 S 51 1 0 "" 22278 nsv457341 2 46624410 46635667 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534547 S 1557 1 0 "" NINDS_106 nsv438326 2 46634870 46637861 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470707,nssv470696 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA10847,NA12146 nsv9713 2 46687007 46702217 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28022 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19132 nsv521013 2 46723989 46729295 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv681255,nssv693784,nssv679828 M 2026 0 3 "" nsv213378 2 46913485 46917772 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv231956 M 24 "" nsv457352 2 46916439 47237624 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534553 S 1557 0 1 "" 1780854536_A nsv213366 2 46925519 46926985 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv231944 M 24 "" nsv213855 2 46937979 46938033 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232433 M 24 "" nsv817840 2 46955869 46982478 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416308 S 112 1 0 "" NA18855 nsv524374 2 46977776 46977933 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700286 S 2026 0 1 "" nsv524970 2 47074390 47213746 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700995 S 2026 0 1 "" nsv525197 2 47122398 47209624 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701278 S 2026 0 1 "" nsv517929 2 47128745 47154963 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695342 S 2026 0 1 "" nsv518312 2 47136578 47173788 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695743 S 2026 0 1 "" nsv519298 2 47141604 47142382 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv675671,nssv656824,nssv655239 M 2026 0 3 "" nsv521400 2 47141604 47142866 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698011 S 2026 0 1 "" nsv519217 2 47141604 47144146 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696706 S 2026 1 0 "" nsv521030 2 47160890 47166710 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv692190,nssv683540,nssv680111,nssv696970,nssv681285 M 2026 0 5 "" nsv525855 2 47160890 47171118 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702050 S 2026 0 1 "" nsv457363 2 47160890 47174883 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534563 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00747 nsv528091 2 47160890 47185383 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704627 S 2026 0 1 "" nsv2716 2 47223817 47248251 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5788 S 9 0 1 "" NA19129 nsv526478 2 47388467 47389235 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702785 S 2026 0 1 "" nsv524003 2 47454896 47501685 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699863 S 2026 0 1 "" nsv520660 2 47501685 47512757 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697542 S 2026 0 1 "" nsv527823 2 47556900 47621355 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704318 S 2026 1 0 "" nsv2717 2 47679700 47714101 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3018 S 9 1 0 "" NA18555 nsv457396 2 47777784 47868495 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534592 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00210 nsv522213 2 47859752 47868495 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694989 S 2026 0 1 "" nsv215484 2 47895327 47895676 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv234062 M 24 "" nsv519831 2 47984506 48477682 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697074 S 2026 1 0 "" nsv523013 2 47984768 48057773 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698688 S 2026 0 1 "" nsv519761 2 48057773 48159752 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694427,nssv685873,nssv658329 M 2026 2 1 "" nsv833969 2 48132578 48239979 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441902,nssv1441900,nssv1441901 M 95 1 2 "" nsv2718 2 48133763 48167114 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1491 S 9 1 0 "" NA19240 nsv457407 2 48326386 48404833 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534602 S 1557 0 1 "" NINDS_46 nsv518718 2 48535658 48561959 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696169 S 2026 0 1 "" nsv524919 2 48561389 48570430 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700931 S 2026 1 0 "" nsv833981 2 48617095 48789830 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441903 S 95 0 1 "" nsv833992 2 48725874 48909688 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441904 S 95 1 0 "" nsv2719 2 48759106 48778764 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6836 S 9 0 1 "" NA12156 nsv817851 2 48853079 48884778 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416309 S 112 1 0 "" NA18855 nsv518963 2 48949805 48963944 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696430 S 2026 0 1 "" nsv519859 2 48957635 48963944 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704547,nssv671266,nssv659126 M 2026 0 3 "" nsv834003 2 49043324 49223924 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441905 S 95 0 1 "" esv2751895 2 49090000 49183068 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6989933,essv6984230,essv6984229,essv6984228 M 771 0 1 "" BEC_814 nsv523955 2 49098353 49101572 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699805 S 2026 0 1 "" nsv518852 2 49098353 49103241 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696306 S 2026 0 1 "" nsv817862 2 49104355 49134223 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416310 S 112 1 0 "" NA18855 nsv2720 2 49184829 49229541 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7495 S 9 0 1 "" NA12156 dgv218n21 2 49187101 49191583 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv521961,nsv526986 M 2026 0 2 "" nsv527059 2 49217584 49232815 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703437 S 2026 1 0 "" nsv214070 2 49266616 49266686 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232648 M 24 "" nsv817873 2 49282780 49338119 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416311 S 112 1 0 "" NA18855 nsv522402 2 49305033 49340760 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695184 S 2026 0 1 "" nsv517823 2 49332061 49335565 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695228 S 2026 0 1 "" nsv529037 2 49332061 49340760 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705749 S 2026 0 1 "" nsv508141 2 49402419 49457282 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622809 S 4 0 1 "" NA18994 nsv213365 2 49410594 49420215 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv231943 M 24 "" nsv457418 2 49426382 49474187 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534612 S 1557 0 1 "" NINDS_72 nsv2722 2 49429871 49475042 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7496 S 9 0 1 "" NA12156 dgv457n27 2 49445149 49449446 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv457485,nsv457441,nsv457429,nsv457496,nsv457474,nsv457463,nsv457452 M 1557 0 7 "" 1780854489_A,1780862546_A,HGDP00949,HGDP01103,HGDP01204,HGDP01232,HGDP01250 nsv517366 2 49445149 49449446 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv667685,nssv662107,nssv666592,nssv683561,nssv655556,nssv669067,nssv656638,nssv690565,nssv657743,nssv667796,nssv674236,nssv679953,nssv693855,nssv672001,nssv687156,nssv673481,nssv658949,nssv699522,nssv651824,nssv673849,nssv652101,nssv694033,nssv654806 M 2026 0 23 "" nsv817884 2 49445149 49449446 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416133,nssv1417266 M 112 0 2 "" NA12891,NA18593 nsv519183 2 49445149 49471198 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696667 S 2026 0 1 "" nsv442732 2 49447419 49452841 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv458n27 2 49447507 49449446 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv457529,nsv457518 M 1557 0 2 "" 1780854479_A,HGDP01221 nsv457540 2 49516543 49550772 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534705 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00600 nsv2723 2 49529786 49544204 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9346 S 9 1 0 "" NA18517 nsv525181 2 49538432 49542284 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701258 S 2026 0 1 "" nsv457563 2 49670326 49773785 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534725 S 1557 0 1 "" 1780854467_A nsv522280 2 49782981 49784090 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695063 S 2026 0 1 "" nsv527407 2 49784090 49800327 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703844 S 2026 1 0 "" nsv518396 2 49901668 49902019 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695826 S 2026 0 1 "" nsv507011 2 49925495 49931495 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623334 S 4 1 0 "" NA18994 nsv522572 2 50004404 50020433 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705956 S 2026 0 1 "" nsv527569 2 50283339 50285271 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704030 S 2026 0 1 "" nsv508083 2 50409353 50415353 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618539 S 4 0 1 "" CHM nsv2724 2 50600527 50645972 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6837 S 9 0 1 "" NA12156 nsv9724 2 50697981 50747262 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28712 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18972 nsv817895 2 50701265 50744486 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417577 S 112 0 1 "" NA18972 dgv1182e1 2 50710112 50772700 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2947,esv1299 M 271 0 0 "" NA18972 nsv522125 2 50740682 50740795 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694899 S 2026 0 1 "" nsv523020 2 50783069 50850610 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698699 S 2026 0 1 "" nsv521027 2 50844593 50850610 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697742 S 2026 0 1 "" nsv528678 2 50858695 50880459 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705318 S 2026 0 1 "" nsv526822 2 50875193 50894837 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703177 S 2026 0 1 "" nsv457585 2 50875193 50950780 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534738 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01261 nsv522899 2 50876758 50905887 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698557 S 2026 0 1 "" esv2751896 2 50887822 50952471 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6981196,essv6987924 M 771 0 1 "" BEC_362 nsv520225 2 50894837 50994405 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv675262,nssv661985,nssv703711 M 2026 0 3 "" nsv457596 2 50925298 50965653 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534746 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01155 nsv457618 2 50940313 50971487 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534764 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00382 nsv528417 2 50948363 51150303 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705009 S 2026 0 1 "" nsv457629 2 50953993 51032532 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534775 S 1557 0 1 "" 1780862212_A nsv528430 2 50970396 51017503 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705023 S 2026 0 1 "" nsv525262 2 51017503 51126644 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701362 S 2026 0 1 "" nsv834014 2 51093497 51272188 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441906 S 95 0 1 "" nsv523528 2 51095210 51095874 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699302 S 2026 0 1 "" nsv508084 2 51097778 51103778 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624269,nssv621522 M 4 0 2 "" NA15510,NA18994 nsv523833 2 51102895 51103083 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699665 S 2026 0 1 "" nsv2725 2 51184983 51206128 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6839 S 9 1 0 "" NA12156 nsv521850 2 51191045 51349067 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694625 S 2026 0 1 "" dgv1183e1 2 51193365 51277533 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2668,esv412 M 271 0 0 "" NA18967 nsv520083 2 51222618 51257166 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697215 S 2026 0 1 "" nsv457651 2 51237553 51269553 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534788 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00766 nsv457674 2 51280190 51388607 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534808 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00145 nsv457685 2 51333433 51388607 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534819 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00056 nsv457696 2 51338825 51364730 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534830 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00157 nsv9735 2 51421334 51423116 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28008,nssv24581 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA18504,NA18853 nsv821624 2 51425576 51756515 CNV Loss Sebat_et_al_2004 15273396 ROMA Custom Nimblegen photoprint 85000 probe ROMA oligo array nssv1421257 S 31 0 1 "" nsv518215 2 51429426 51431978 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695640 S 2026 0 1 "" nsv437446 2 51562894 51577038 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467327 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA12801 nsv527513 2 51585227 51605249 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703967 S 2026 0 1 "" nsv457707 2 51655339 51683715 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534839 S 1557 0 1 "" NINDS_130 dgv459n27 2 51668612 51725619 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv457718,nsv457729 M 1557 0 2 "" 1780854299_A,1780862355_A nsv457740 2 51680563 51713034 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534865 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01185 nsv523014 2 51681720 51683715 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698689 S 2026 0 1 "" nsv817906 2 51683715 51693504 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416033,nssv1416034 M 112 0 2 "" NA12801,NA12813 nsv9746 2 51684369 51700311 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28663,nssv28752,nssv25172 M 31 3 0 Samples from several populations that are part of the HapMap project. "" NA18517,NA18552,NA18972 nsv527776 2 51788314 51809927 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704267 S 2026 0 1 "" nsv518405 2 51809927 51811445 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695836 S 2026 0 1 "" nsv516396 2 51826005 51846399 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv657346,nssv672078,nssv673255,nssv685945,nssv687964,nssv682642,nssv679062,nssv671006,nssv663423,nssv663480,nssv691159,nssv659593,nssv687114,nssv676058,nssv690256,nssv657863,nssv658300,nssv683343,nssv670679,nssv664566,nssv681956,nssv680914,nssv692212,nssv677753,nssv657992,nssv679829,nssv663601,nssv671586,nssv675767,nssv683711,nssv690214,nssv669195,nssv686387,nssv657208,nssv689021,nssv674370,nssv692733,nssv680514,nssv676011,nssv687346,nssv690606,nssv686070,nssv664218,nssv690551,nssv653887,nssv676235,nssv671229,nssv684548,nssv669342,nssv660092,nssv661654,nssv671748,nssv677658,nssv671493,nssv661107,nssv689610,nssv678028,nssv671870,nssv664369,nssv652875,nssv684532,nssv688360,nssv680112,nssv653787,nssv691675,nssv653057,nssv668104,nssv672002,nssv665548,nssv668852,nssv673568,nssv663948,nssv661368,nssv659688,nssv675213,nssv672845,nssv693314,nssv652071,nssv653109,nssv687696,nssv683131,nssv655473,nssv682233,nssv672158,nssv682944,nssv678492,nssv655172,nssv683436,nssv652720,nssv662627,nssv665916,nssv682929,nssv691985,nssv658855,nssv682539,nssv672445,nssv678512,nssv691189,nssv688705,nssv661780,nssv676470,nssv693719,nssv661041,nssv689422,nssv655968,nssv693137,nssv665871,nssv653033,nssv652310,nssv685070,nssv661171,nssv665650,nssv658285,nssv678757,nssv653924,nssv661253,nssv689884,nssv692126,nssv654826,nssv682111,nssv685249,nssv691653,nssv685142,nssv666131,nssv653679,nssv692150,nssv655557,nssv661578,nssv691555,nssv658840,nssv688085,nssv653980,nssv690969,nssv683840,nssv684259,nssv664201,nssv652937,nssv687798,nssv681484,nssv656234,nssv663831,nssv662715,nssv674731,nssv657638,nssv662494,nssv673850,nssv676909,nssv683193,nssv665521,nssv669477,nssv667228,nssv675389,nssv676283,nssv666105,nssv656058,nssv655426,nssv678377,nssv685759,nssv687477,nssv692652,nssv653507,nssv665589,nssv690981,nssv670717,nssv655450,nssv681579,nssv674459,nssv679623,nssv681219,nssv683508,nssv680230,nssv658415,nssv669279,nssv661808,nssv653241,nssv669036,nssv669135,nssv691771,nssv671828,nssv666628,nssv672567,nssv669835,nssv692895,nssv678573,nssv657844,nssv684182,nssv660472,nssv657700,nssv652600,nssv687157,nssv665708,nssv681307,nssv667251 M 2026 0 193 "" nsv9757 2 51838197 51840093 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26377,nssv25441,nssv28188 M 31 0 3 Samples from several populations that are part of the HapMap project. "" NA10847,NA10863,NA12155 nsv471780 2 51838227 51839421 CNV Loss Hinds et al 2006 16327809 Oligo_aCGH,PCR Custom Perlegen arrays nssv646061 M 0.312 95 "" nsv215007 2 51855206 51855269 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233585 M 24 "" nsv520028 2 51878895 51897990 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv660149,nssv693012 M 2026 0 2 "" nsv526861 2 51947966 51950326 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703219 S 2026 1 0 "" nsv457751 2 51952493 51971776 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534874 S 1557 0 1 "" NINDS_95 nsv457774 2 51959926 51977618 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534896 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01053 dgv460n27 2 51962720 51977068 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv457796,nsv457785 M 1557 0 2 "" HGDP00157,HGDP01337 nsv525128 2 51971776 51971882 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701196 S 2026 0 1 "" nsv524762 2 51971776 51978002 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700753 S 2026 0 1 "" nsv817917 2 51971776 51978002 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418430 S 112 0 1 "" NA19193 nsv518842 2 51995217 52000777 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696296 S 2026 0 1 "" nsv517644 2 51995240 51995967 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv652659,nssv688959 M 2026 0 2 "" nsv526141 2 52007908 52174583 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702396 S 2026 0 1 "" nsv518024 2 52042858 52043193 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695434 S 2026 0 1 "" nsv2726 2 52048731 52083322 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1493 S 9 1 0 "" NA19240 nsv526275 2 52167248 52227949 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702553 S 2026 0 1 "" nsv523804 2 52415015 52464674 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699633 S 2026 0 1 "" nsv834025 2 52426610 52604700 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441908 S 95 1 0 "" nsv2727 2 52552627 52585416 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6840 S 9 1 0 "" NA12156 nsv2728 2 52636828 52719547 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv11013,nssv6841,nssv4415,nssv9348 M 9 0 4 "" NA12156,NA12878,NA15510,NA18517 nsv834036 2 52638891 52827851 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441909 S 95 0 1 "" dgv1184e1 2 52639031 52726188 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv17541,esv143 M 271 0 0 "" NA12762 nsv508142 2 52659776 52698420 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622810 S 4 0 1 "" NA18994 nsv9769 2 52661218 52697322 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24571,nssv28198,nssv28790,nssv25959,nssv25452,nssv28703,nssv25710,nssv27934,nssv27284,nssv23704,nssv25721,nssv27291,nssv26551,nssv26174 M 31 0 14 Samples from several populations that are part of the HapMap project. "" NA11830,NA12740,NA12802,NA18517,NA18537,NA18552,NA18563,NA18564,NA18572,NA18942,NA18972,NA18975,NA19007,NA19144 esv33556 2 52661395 52697492 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101496,essv98699,essv97536,essv101126,essv93908,essv100750,essv96810,essv95081,essv98183,essv94751,essv93970,essv94447,essv96984,essv97935,essv95419,essv93045,essv95903,essv94572,essv99113,essv92883,essv96179,essv96737,essv97110,essv98536,essv96007,essv93433,essv93285,essv95040,essv92520,essv96487,essv97698,essv100458,essv100430,essv99507,essv98426,essv96402 M 51 32 4 "" 21603,21606,21616,21618,21634,21656,21659,21721,21772,21791,21802,21808,21817,21837,21847,21863,21911,21932,21938,21939,22007,22011,22075,22085,22127,22128,22170,22231,22233,22261,22278,22298,22300,22335,22352,22371 nsv438337 2 52663182 52694201 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470729,nssv470973,nssv470983,nssv470818,nssv470985,nssv470970,nssv470940,nssv470852,nssv470774,nssv470975,nssv470993,nssv470996,nssv470984,nssv470990,nssv470907,nssv470829,nssv470741,nssv470987,nssv470997,nssv470982,nssv470974,nssv470929,nssv470998,nssv470977,nssv470718,nssv470918,nssv470951,nssv470986,nssv470896,nssv470785,nssv470989,nssv470840,nssv470971,nssv470807,nssv470752,nssv470999,nssv470874,nssv470963,nssv470981,nssv470972,nssv470796,nssv470988,nssv470994,nssv470992,nssv470763,nssv470885,nssv470995,nssv470976,nssv470863,nssv470978 M 269 0 49 Samples from several populations that are part of the HapMap project. "" NA07019,NA07056,NA10856,NA10859,NA11881,NA11993,NA12249,NA12717,NA12753,NA12762,NA12812,NA12815,NA12878,NA12891,NA18524,NA18526,NA18537,NA18542,NA18545,NA18547,NA18561,NA18564,NA18570,NA18571,NA18579,NA18608,NA18609,NA18620,NA18621,NA18637,NA18940,NA18947,NA18948,NA18949,NA18951,NA18952,NA18953,NA18964,NA18968,NA18975,NA18976,NA18978,NA18981,NA18990,NA18991,NA18992,NA18994,NA18995,NA19007 nsv442734 2 52663221 52693193 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv433188 2 52672104 52695323 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463069 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA12878 nsv9780 2 52709451 52711694 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28887 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19221 nsv517582 2 52741109 52804816 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv656674,nssv652433,nssv667656 M 2026 0 3 "" nsv834047 2 52785908 52967890 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441910 S 95 1 0 "" nsv508085 2 52825209 52831209 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622340 S 4 0 1 "" NA10860 nsv507012 2 52862389 52868389 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620716,nssv621995,nssv623335,nssv617562 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv527135 2 52868675 52931473 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703522 S 2026 0 1 "" nsv508086 2 52900844 52906844 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618540 S 4 0 1 "" CHM nsv524510 2 52913876 52941987 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700454 S 2026 0 1 "" nsv457807 2 52915391 52939449 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534929 S 1557 0 1 "" NINDS_38 nsv524806 2 52924971 52964131 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700798 S 2026 0 1 "" nsv520722 2 52951421 53332666 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv674792,nssv690894,nssv702554,nssv702363 M 2026 0 4 "" esv32824 2 52962938 52963099 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100653 S 51 0 1 "" 21656 nsv508087 2 52964407 52970407 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622341,nssv624271 M 4 0 2 "" NA10860,NA18994 dgv16e24 2 52979306 52980078 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH esv2750524,esv2750624,esv2750633,esv2750695,esv2750754,esv2750778,esv2750670 M 51 0 7 "" 21659,21772,21808,21817,21847,21938,22335 esv33478 2 53018894 53019023 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99822 S 51 0 1 "" 22086 esv33728 2 53037316 53043331 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99513 S 51 1 0 "" 22335 esv2751897 2 53269856 53386989 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6989732,essv6983094,essv6983095 M 771 0 1 "" BEC_542 nsv508088 2 53296041 53302041 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624272,nssv622342,nssv618541 M 4 0 3 "" CHM,NA10860,NA18994 dgv219n21 2 53386989 53463251 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv522095,nsv522463 M 2026 0 2 "" dgv461n27 2 53441208 53463251 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv457851,nsv457829,nsv457840 M 1557 0 3 "" HGDP00810,HGDP01318,HGDP01321 nsv215113 2 53469735 53471428 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233691 M 24 "" nsv518692 2 53563562 53568519 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696143 S 2026 0 1 "" nsv457862 2 53599381 53618554 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534969 S 1557 0 1 "" 1782681495_A nsv522771 2 53605270 53612975 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698412 S 2026 0 1 "" nsv457873 2 53612975 53696688 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534978 S 1557 1 0 "" 1798860279_A nsv457886 2 53634246 53746734 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534985 S 1557 0 1 "" 1780862212_A nsv527830 2 53696688 53778959 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704326 S 2026 0 1 "" nsv2729 2 53710178 53743428 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5789 S 9 1 0 "" NA19129 nsv516185 2 53753733 53762033 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv666924,nssv677130,nssv654447,nssv657591,nssv666900,nssv692081,nssv673791,nssv692380,nssv670479,nssv659073,nssv679471,nssv674310,nssv663264,nssv677242,nssv668556,nssv686717,nssv654429,nssv685846,nssv655590,nssv676084,nssv657278,nssv678144,nssv692547,nssv663481,nssv686250,nssv688997,nssv691483,nssv672868,nssv663217,nssv664655,nssv672319,nssv670654,nssv656974,nssv673873,nssv687295,nssv652597,nssv680267,nssv655733,nssv659401,nssv675229,nssv666348,nssv670371,nssv680150,nssv684935,nssv665535,nssv693411,nssv671942,nssv691909,nssv665043,nssv675795,nssv685296,nssv676933,nssv686555,nssv657321,nssv663703,nssv667066,nssv652627,nssv655692,nssv665969,nssv701772,nssv680915,nssv660737,nssv666002,nssv661325,nssv681782,nssv661629,nssv667976,nssv665496,nssv661070 M 2026 0 69 "" nsv817928 2 53756553 53758198 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416908,nssv1418514,nssv1416907,nssv1416535,nssv1418525 M 112 0 5 "" NA19137,NA19139,NA19140,NA19142,NA19172 nsv834058 2 53812325 53983662 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441914,nssv1441913,nssv1441911,nssv1441912 M 95 1 3 "" nsv2730 2 53865332 53899680 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3019 S 9 1 0 "" NA18555 nsv525086 2 54343873 54370862 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701144 S 2026 0 1 "" nsv457897 2 54370744 54414563 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv534995 S 1557 1 0 "" NINDS_102 nsv507013 2 54434086 54440086 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620717,nssv617563,nssv623336 M 4 3 0 "" CHM,NA15510,NA18994 nsv438348 2 54604855 54625717 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv471000 S 269 0 1 Samples from several populations that are part of the HapMap project. "" NA19192 nsv817939 2 54604855 54629832 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418431 S 112 1 0 "" NA19192 nsv214368 2 54605130 54605393 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232946 M 24 "" nsv518406 2 54634922 54672980 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695837 S 2026 0 1 "" nsv2731 2 54656720 54701708 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7497 S 9 0 1 "" NA12156 nsv528848 2 54669956 54689227 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705527 S 2026 0 1 "" esv33638 2 54676907 55021106 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv96327 S 51 0 1 "" 22371 nsv2733 2 54745789 54778625 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4416 S 9 1 0 "" NA12878 dgv462n27 2 54921766 54942674 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv457919,nsv457908 M 1557 2 0 "" HGDP00558,HGDP00574 nsv525624 2 54974764 54977961 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701773 S 2026 1 0 "" nsv519306 2 54975783 54977961 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv655285,nssv683804 M 2026 2 0 "" nsv2734 2 54976182 55010814 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1494 S 9 1 0 "" NA19240 nsv457930 2 54985079 55002680 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535020 S 1557 0 1 "" 1780862410_A nsv519246 2 54991063 54992274 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696738 S 2026 1 0 "" nsv528980 2 54991063 54992274 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705679 S 2026 0 1 "" nsv834069 2 55008248 55163331 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441915,nssv1441916 M 95 0 2 "" nsv7312 2 55041415 55073166 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1495 S 9 0 0 "" NA19240 nsv2735 2 55075151 55109219 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7498 S 9 1 0 "" NA12156 nsv508838 2 55076635 55093389 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621166,nssv619901 M 4 2 0 "" NA10860,NA15510 nsv517331 2 55236611 55246696 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv666349,nssv698741,nssv690451,nssv654403,nssv680306,nssv651745,nssv673903,nssv674311 M 2026 0 8 "" nsv817951 2 55236611 55246696 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418536,nssv1415562 M 112 0 2 "" NA19141,NA19142 nsv438350 2 55238742 55244886 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv471003,nssv471001 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA19141,NA19142 nsv522772 2 55259123 55261377 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698413 S 2026 0 1 "" nsv522016 2 55316445 55471949 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694785 S 2026 1 0 "" nsv525025 2 55394671 55417107 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701065 S 2026 0 1 "" nsv457941 2 55429142 55497566 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535031 S 1557 0 1 "" NINDS_145 nsv524437 2 55527017 55531574 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700367 S 2026 0 1 "" nsv520581 2 55534476 55814667 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697502 S 2026 0 1 "" nsv521318 2 55628301 55648355 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697925 S 2026 0 1 "" nsv525434 2 55628301 55753291 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701562 S 2026 0 1 "" nsv834080 2 55652687 55839579 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441917 S 95 0 1 "" dgv1185e1 2 55658890 55892725 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv12154,essv11523,esv372,essv13853 M 271 0 0 "" NA18854,NA19101,NA19173 nsv9791 2 55784376 55795402 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25711 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18552 nsv9802 2 55821905 55850904 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28917,nssv24896,nssv28359,nssv28107 M 31 4 0 Samples from several populations that are part of the HapMap project. "" NA18853,NA19132,NA19173,NA19221 nsv442740 2 55826441 55850230 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv2736 2 56022220 56055798 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1496 S 9 1 0 "" NA19240 nsv519184 2 56065967 56075555 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696668 S 2026 0 1 "" dgv1186e1 2 56090090 56384045 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv5309,esv426 M 271 0 0 "" NA18563 esv33163 2 56111433 56115496 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97460 S 51 0 1 "" 21616 nsv520175 2 56140002 56243026 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697263 S 2026 1 0 "" nsv9813 2 56149152 56155252 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28977 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19221 esv34703 2 56184600 56293832 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6990372,essv6979497,essv6979498,essv6979499 M 771 1 0 "" NA18563 nsv9824 2 56193827 56303734 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27404,nssv28093 M 31 1 1 Samples from several populations that are part of the HapMap project. "" NA18504,NA18563 nsv457952 2 56204534 56300397 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535042 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01100 nsv441758 2 56237097 56239679 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv522006 2 56408240 56457496 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694776 S 2026 0 1 "" nsv834093 2 56449748 56620328 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441919 S 95 1 0 "" nsv522944 2 56515636 56588648 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698609 S 2026 1 0 "" nsv2737 2 56553603 56576050 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2262 S 9 0 1 "" NA18555 nsv9835 2 56556559 56567728 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28016,nssv24886,nssv26710,nssv25966,nssv28408,nssv29007,nssv28084,nssv24887,nssv27943,nssv26547,nssv28157,nssv26184,nssv24005,nssv26550,nssv25700,nssv27516,nssv28743,nssv24586,nssv28248,nssv25176,nssv26380,nssv27279 M 31 22 0 Samples from several populations that are part of the HapMap project. "" NA07048,NA10839,NA10847,NA10863,NA11830,NA12740,NA12802,NA12872,NA18502,NA18517,NA18563,NA18564,NA18572,NA18853,NA18860,NA18980,NA19007,NA19132,NA19144,NA19173,NA19221,NA19240 dgv1187e1 2 56571336 56762849 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv5904,esv706 M 271 0 0 "" NA18550 essv7905 2 56618323 56661860 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19239 essv7983 2 56618323 56682540 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19240 nsv528401 2 56618409 56624077 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704991 S 2026 0 1 "" nsv517645 2 56624077 56666130 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv652660,nssv663856,nssv670246,nssv687296,nssv660374,nssv693242,nssv681801 M 2026 5 2 "" nsv9846 2 56631541 56663609 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28026 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19240 nsv433352 2 56633658 56658282 CNV Gain Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463233 S 9 1 0 Samples from several populations that are part of the HapMap project. "" NA19240 nsv817962 2 56633658 56658282 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416829,nssv1416830 M 112 2 0 "" NA19239,NA19240 esv34748 2 56645514 56661860 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6980641,essv6980642 M 771 1 0 "" NA19239 nsv2738 2 56650781 56652634 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1497 S 9 1 0 "" NA19240 essv5691 2 56653267 56722941 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18550 esv35146 2 56653400 56722941 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6979418,essv6979416,essv6988169,essv6979417 M 771 0 1 "" NA18550 nsv817973 2 56655086 56729578 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417177 S 112 0 1 "" NA18550 nsv523495 2 56905041 56921960 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699264 S 2026 0 1 "" nsv515537 2 56919709 56921960 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv674237,nssv687004,nssv673482,nssv682961,nssv657111,nssv663857 M 2026 0 6 "" nsv2739 2 56941515 56967019 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4417 S 9 1 0 "" NA12878 nsv457963 2 56971782 57309074 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535049 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00645 nsv457974 2 57025807 57086738 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535058 S 1557 0 1 "" 1798860071_A nsv834104 2 57063262 57207978 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441921,nssv1441920 M 95 2 0 "" nsv2740 2 57103651 57138807 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1498 S 9 1 0 "" NA19240 nsv525507 2 57132877 57136281 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701639 S 2026 0 1 "" dgv1188e1 2 57196182 57400047 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv824,essv17838 M 271 0 0 "" NA10831 nsv9857 2 57216746 57230156 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28820 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18972 nsv528800 2 57253099 57257222 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705474 S 2026 0 1 "" nsv214005 2 57254395 57254721 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232583 M 24 "" dgv1189e1 2 57294090 57353462 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv23155,essv21594 M 271 0 0 "" NA10831,NA12155 dgv150e55 2 57299430 57361900 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv35165,esv2751898,esv2751899 M 771 3 0 "" BEC_298,NA10831,SPC_184 esv34506 2 57299430 57577280 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6978714,essv6978715,essv6990275 M 771 1 0 "" NA12155 nsv214453 2 57306411 57306411 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233031 M 24 "" nsv517515 2 57307915 57377190 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv665014,nssv691556,nssv683950,nssv655883,nssv652248,nssv679954,nssv665917,nssv678493,nssv678460,nssv670392,nssv653119,nssv661655,nssv682085,nssv654389,nssv670008,nssv689094,nssv688086,nssv678437,nssv693466,nssv679699,nssv655366,nssv679360,nssv678554,nssv663985,nssv686465,nssv664612 M 2026 26 0 "" nsv9868 2 57310314 57360153 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28238 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA12155 nsv438351 2 57319300 57327003 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv471004,nssv471005 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA10831,NA12155 nsv213757 2 57329668 57329877 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232335 M 24 "" nsv457985 2 57345763 58688820 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535065 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00817 nsv508839 2 57365947 57375309 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623866,nssv618003,nssv619902,nssv621167 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv834115 2 57385964 57540910 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441922 S 95 0 1 "" nsv2741 2 57429935 57437677 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1499 S 9 1 0 "" NA19240 nsv834126 2 57430306 57612666 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441923 S 95 1 0 "" nsv515624 2 57461290 57463738 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv674413,nssv676110,nssv669972,nssv664144,nssv667405,nssv689707 M 2026 0 6 "" nsv457997 2 57519100 57586231 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535074 S 1557 0 1 "" 1780854219_A nsv525779 2 57519100 57597540 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701954 S 2026 1 0 "" nsv526359 2 57528616 57615118 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702652 S 2026 0 1 "" dgv463n27 2 57538643 57586231 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv458008,nsv458019 M 1557 0 2 "" 1780862001_A,1780862042_A nsv834137 2 57595300 57825549 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441924 S 95 1 0 "" nsv526505 2 57650133 57650374 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702815 S 2026 1 0 "" nsv528195 2 57650133 57650374 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704752 S 2026 0 1 "" nsv524338 2 57650133 57655970 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700245 S 2026 1 0 "" nsv527499 2 57753726 57756667 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703949 S 2026 0 1 "" nsv817984 2 57753726 57756667 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415783,nssv1415672 M 112 0 2 "" NA06985,NA06991 nsv834148 2 57891312 58030864 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441925,nssv1441926,nssv1441927 M 95 1 2 "" nsv458030 2 57924484 57973871 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535093 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00092 nsv508840 2 57960367 57978389 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619903,nssv623867,nssv618004,nssv621168 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv508089 2 58010022 58016022 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622343 S 4 0 1 "" NA10860 nsv834159 2 58012913 58195306 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441930,nssv1441928 M 95 2 0 "" nsv525988 2 58073171 58339437 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702210 S 2026 1 0 "" nsv458041 2 58107761 58149375 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535098 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00611 nsv527551 2 58223335 58228859 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704012 S 2026 0 1 "" nsv458052 2 58300347 58362220 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535106 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00529 nsv817995 2 58302189 58362220 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418432 S 112 0 1 "" NA19193 dgv1190e1 2 58306194 61252101 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv22129,essv17853,esv742 M 271 0 0 "" NA10857 esv34455 2 58322600 61207124 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6978018,essv6978019,essv6978020,essv6990186,essv6986519,essv6986518 M 771 1 0 "" NA10857 nsv9880 2 58734865 58737259 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28143,nssv27626,nssv25456,nssv25955 M 31 0 4 Samples from several populations that are part of the HapMap project. "" NA18504,NA18537,NA18563,NA18853 nsv9891 2 58862748 58865508 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28101 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18860 nsv528866 2 58867604 58886794 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705546 S 2026 0 1 "" nsv518430 2 58870179 58870763 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695865 S 2026 0 1 "" nsv523925 2 59119256 59125229 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699770 S 2026 0 1 "" nsv2742 2 59165986 59170746 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9569 S 9 1 0 "" NA18507 nsv834170 2 59348327 59516445 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441931 S 95 0 1 "" esv32749 2 59416597 59420774 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv94770 S 51 1 0 "" 21791 nsv2745 2 59519467 59548798 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10212 S 9 0 1 "" NA18956 nsv438352 2 59535239 59537273 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv471006,nssv471008,nssv471007 M 269 0 3 Samples from several populations that are part of the HapMap project. "" NA18542,NA18561,NA18621 nsv9902 2 59577195 59586031 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25956 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18552 nsv508143 2 59614195 59637807 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620181 S 4 0 1 "" NA15510 nsv834181 2 59626570 59813819 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441932 S 95 0 1 "" nsv215162 2 59681311 59681311 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233740 M 24 "" nsv834192 2 59756758 59882328 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441933 S 95 1 0 "" nsv516737 2 59783625 59784777 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv670539,nssv676553,nssv692781 M 2026 0 3 "" nsv507014 2 59844807 59850807 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621996,nssv623337 M 4 2 0 "" NA10860,NA18994 nsv9913 2 60024397 60026948 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26553 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA12740 nsv2746 2 60110317 60111708 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3020 S 9 1 0 "" NA18555 nsv508144 2 60127242 60165571 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619031 S 4 0 1 "" NA10860 nsv2747 2 60234145 60279453 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7499 S 9 0 1 "" NA12156 nsv507015 2 60281992 60287992 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623338,nssv617564 M 4 2 0 "" CHM,NA18994 nsv834204 2 60442529 60613376 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441934 S 95 1 0 "" nsv214016 2 60573406 60574314 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232594 M 24 "" nsv519105 2 60614417 60619239 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696581 S 2026 0 1 "" nsv9924 2 60674771 60684668 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28207 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19132 nsv519006 2 60797537 60799853 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696475 S 2026 0 1 "" nsv834215 2 60925640 61125858 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441935 S 95 0 1 "" nsv2748 2 60950859 60968795 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7500 S 9 1 0 "" NA12156 nsv524802 2 60999480 61047780 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700794 S 2026 0 1 "" nsv2749 2 61027331 61059794 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6842 S 9 1 0 "" NA12156 nsv518805 2 61302956 61304826 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696259 S 2026 0 1 "" nsv528479 2 61354561 61360144 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705082 S 2026 0 1 "" nsv7313 2 61506826 64960844 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4418 S 9 0 0 "" NA12878 nsv9935 2 61614200 61617040 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28111 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19240 nsv9946 2 61675200 61677087 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27269,nssv26712,nssv26706,nssv28193,nssv25715,nssv27399,nssv25167,nssv28134,nssv25945,nssv27734,nssv28448,nssv26181,nssv26390,nssv28781,nssv26709,nssv24299 M 31 15 1 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10847,NA10863,NA12740,NA12872,NA18502,NA18504,NA18517,NA18552,NA18563,NA18572,NA18853,NA19144,NA19173 nsv521414 2 61714960 61874612 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698024 S 2026 1 0 "" nsv2750 2 61770375 61814860 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2263 S 9 0 1 "" NA18555 nsv458074 2 61831038 62159102 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535119 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01371 nsv516248 2 61847323 61874553 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv663025,nssv667051 M 2026 2 0 "" nsv519398 2 62109529 62142621 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv677619,nssv673256,nssv655908 M 2026 0 3 "" nsv526101 2 62391896 62403226 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702349 S 2026 1 0 "" nsv508090 2 62415416 62421416 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622344 S 4 0 1 "" NA10860 nsv508145 2 62418416 62459211 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622811 S 4 0 1 "" NA18994 nsv2751 2 62602915 62648782 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6843 S 9 0 1 "" NA12156 dgv60n68 2 62656678 62837687 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH nsv834226,nsv834237 M 95 6 0 "" nsv527200 2 62663270 62669695 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703599 S 2026 0 1 "" nsv834241 2 63401913 63579856 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441943 S 95 1 0 "" nsv2752 2 63675559 63708735 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4421 S 9 1 0 "" NA12878 nsv834242 2 63802900 63957268 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441944 S 95 1 0 "" nsv213517 2 63847870 63847950 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232095 M 24 "" nsv521717 2 64015783 64098233 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694478 S 2026 1 0 "" dgv1191e1 2 64164656 64451207 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv11901,esv657,essv12611 M 271 0 0 "" NA18500,NA18502 nsv2753 2 64183539 64192951 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4422 S 9 1 0 "" NA12878 dgv151e55 2 64223793 64433017 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv34955,esv34698 M 771 2 0 "" NA18500,NA18502 nsv834243 2 64228165 64388586 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441946,nssv1441945,nssv1441947,nssv1441949,nssv1441948 M 95 1 4 "" nsv9957 2 64253365 64429882 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27511 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18502 dgv1192e1 2 64260853 64432941 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv13340,essv12875 M 271 0 0 "" NA18500,NA18502 nsv508146 2 64388291 64398974 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620182 S 4 0 1 "" NA15510 nsv834244 2 64392594 64557910 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441950 S 95 1 0 "" nsv834245 2 64534700 64727836 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441952 S 95 1 0 "" nsv527060 2 64607544 64613733 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703438 S 2026 0 1 "" nsv2754 2 64660695 64690108 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7501 S 9 1 0 "" NA12156 nsv2756 2 64727414 64772316 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7502 S 9 0 1 "" NA12156 nsv516331 2 64738271 64740802 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv667623,nssv681333 M 2026 0 2 "" nsv458096 2 64801559 64872687 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535134 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00205 nsv2757 2 64877350 64905615 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5790 S 9 1 0 "" NA19129 nsv508091 2 65015140 65021140 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622345 S 4 0 1 "" NA10860 nsv458108 2 65018001 65058097 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535142 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01287 nsv527570 2 65111711 65119725 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704031 S 2026 0 1 "" nsv834246 2 65120661 65315722 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441953 S 95 0 1 "" nsv215251 2 65305385 65305627 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233829 M 24 "" nsv527241 2 65403453 65406934 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703643 S 2026 0 1 "" nsv213210 2 65495344 65501048 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv231788 M 24 "" nsv2758 2 65515322 65548381 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2264 S 9 1 0 "" NA18555 nsv508841 2 65646808 65725289 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619905 S 4 1 0 "" NA10860 nsv215435 2 65719171 65719480 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv234013 M 24 "" nsv518362 2 65898942 65980627 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695789 S 2026 0 1 "" nsv2759 2 65903037 65935293 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4651 S 9 0 1 "" NA19129 dgv1193e1 2 66041145 66060953 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1203,essv14006 M 271 0 0 "" NA19222 nsv526156 2 66079716 66112299 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702415 S 2026 0 1 "" nsv2760 2 66088576 66120310 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6844 S 9 0 1 "" NA12156 nsv2761 2 66147166 66180966 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5791 S 9 1 0 "" NA19129 dgv1194e1 2 66240707 66411516 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv36,essv20895 M 271 0 0 "" NA12801 nsv525001 2 66244565 66245822 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701034 S 2026 0 1 "" nsv9968 2 66295868 66305062 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28257 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19132 esv32681 2 66362625 66363068 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99328 S 51 1 0 "" 22275 nsv521834 2 66395286 66398142 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694607 S 2026 0 1 "" nsv9979 2 66416385 66421355 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27834,nssv28298,nssv26191,nssv26563,nssv26180 M 31 0 5 Samples from several populations that are part of the HapMap project. "" NA18537,NA18563,NA18564,NA18572,NA19007 nsv834248 2 66668524 66882029 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441954 S 95 1 0 "" nsv522353 2 66715544 66719687 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695132 S 2026 0 1 "" nsv508092 2 66855491 66861491 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621524,nssv622346,nssv624273,nssv618542 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv214098 2 66901862 66901862 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232676 M 24 "" nsv2762 2 66996144 67029014 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6845 S 9 1 0 "" NA12156 nsv458119 2 67116293 67151679 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535144 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00151 essv717 2 67178358 67248668 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18940 dgv1195e1 2 67178358 67377313 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv789,essv16331 M 271 0 0 "" NA19193 esv34381 2 67184771 67227901 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6980023,essv6989139,essv6988294 M 771 0 1 "" NA18940 nsv9991 2 67235223 67240922 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26387,nssv26397 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18552,NA19007 nsv818006 2 67335844 67349691 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416312 S 112 1 0 "" NA18855 nsv2763 2 67364832 67398383 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7503 S 9 1 0 "" NA12156 dgv220n21 2 67375798 67377404 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv525890,nsv525580 M 2026 0 2 "" nsv834249 2 67427122 67603256 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441955 S 95 0 1 "" nsv515948 2 67671723 67674557 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv688933,nssv656145,nssv667527,nssv669510,nssv687265,nssv666051,nssv666901,nssv690103,nssv679429,nssv665417,nssv658071,nssv682519,nssv662533,nssv692548 M 2026 0 14 "" nsv441759 2 67672606 67677543 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv834250 2 67809373 67963183 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441956 S 95 1 0 "" nsv2764 2 67889060 67934527 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6846 S 9 0 1 "" NA12156 nsv2765 2 67945899 67968479 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9858 S 9 1 0 "" NA18507 nsv834251 2 68154379 68339386 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441957 S 95 0 1 "" nsv525802 2 68172666 68190694 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701986 S 2026 0 1 "" dgv221n21 2 68454149 68458100 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv516243,nsv526465 M 2026 0 19 "" nsv524297 2 68454945 68459811 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700198 S 2026 0 1 "" esv33850 2 68661900 68662894 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99902,essv99202 M 51 1 1 "" 22086,22275 nsv521516 2 69174560 69174771 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698133 S 2026 0 1 "" esv33940 2 69254071 69927824 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99375 S 51 0 1 "" 22335 nsv2767 2 69281226 69315191 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3021 S 9 1 0 "" NA18555 nsv528644 2 69309914 69313848 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705276 S 2026 0 1 "" nsv834252 2 69480154 69634029 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441958 S 95 0 1 "" nsv834253 2 69607293 69799994 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441959,nssv1441960 M 95 0 2 "" nsv527716 2 69619328 69635361 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704197 S 2026 0 1 "" nsv214841 2 69628251 69631941 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233419 M 24 "" nsv2768 2 69836638 69855959 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3022 S 9 1 0 "" NA18555 nsv834254 2 69884223 70060179 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441961 S 95 1 0 "" nsv518294 2 70249995 70440252 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695725 S 2026 0 1 "" nsv2769 2 70487311 70520723 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7504 S 9 1 0 "" NA12156 nsv834255 2 70550857 70735456 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441964,nssv1441965 M 95 2 0 "" nsv523670 2 70737871 70742283 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699472 S 2026 1 0 "" nsv521452 2 70759186 70792496 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698063 S 2026 0 1 "" nsv2770 2 70871558 70905459 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5792 S 9 1 0 "" NA19129 nsv458130 2 70955116 70967753 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535153 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00991 nsv519862 2 71049931 71052615 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694351 S 2026 1 0 "" nsv517881 2 71118281 71196995 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695289 S 2026 0 1 "" nsv508147 2 71138588 71205825 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620183 S 4 0 1 "" NA15510 nsv834256 2 71168269 71341467 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441966 S 95 1 0 "" nsv818017 2 71175423 71188353 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416707,nssv1416708 M 112 0 2 "" NA19160,NA19161 nsv524446 2 71202713 71217111 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700379 S 2026 0 1 "" esv32639 2 71206398 71209561 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98800,essv99784 M 51 2 0 "" 21606,22086 nsv517762 2 71239007 71263142 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv668208,nssv657701,nssv667448,nssv686240,nssv669511,nssv671398,nssv651780,nssv684909,nssv687965,nssv667825,nssv665970,nssv681509,nssv653543,nssv676111,nssv656976,nssv682604,nssv680043,nssv666788,nssv661717,nssv690738,nssv686931,nssv660308,nssv655558,nssv654570,nssv673792,nssv670655,nssv654227,nssv678513,nssv675768,nssv662049,nssv675904,nssv677870,nssv659299,nssv676181,nssv672079,nssv657500,nssv652628,nssv676961,nssv689040,nssv686499,nssv686313,nssv651709,nssv659781,nssv666421,nssv672928,nssv685376,nssv670735,nssv656122,nssv682909,nssv693105,nssv693243,nssv681974,nssv664759,nssv658638,nssv688225,nssv689582,nssv684998,nssv657616,nssv689510,nssv683383,nssv662966,nssv681667,nssv665668,nssv653865,nssv693907,nssv672869,nssv659160,nssv681164,nssv669380,nssv677533,nssv662765,nssv679856,nssv665448,nssv691114,nssv685460,nssv658721,nssv679430,nssv658880,nssv651945,nssv666438,nssv670820,nssv689178,nssv687448,nssv692032,nssv661326,nssv671852,nssv657550,nssv655150,nssv662108,nssv688580,nssv656543,nssv690479,nssv681084,nssv661909,nssv656283,nssv657256,nssv675214,nssv692494,nssv657416,nssv656590,nssv668012 M 2026 2 99 "" nsv438353 2 71243958 71254246 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv471015,nssv471012,nssv471014,nssv471011,nssv471010,nssv471009 M 269 0 6 Samples from several populations that are part of the HapMap project. "" NA18505,NA18855,NA18857,NA18913,NA19138,NA19139 nsv2771 2 71247247 71284037 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1501 S 9 0 1 "" NA19240 nsv10002 2 71253721 71260369 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28161,nssv24589,nssv28850 M 31 0 3 Samples from several populations that are part of the HapMap project. "" NA18972,NA19144,NA19240 dgv1196e1 2 71253797 71285075 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv11077,esv1304,essv16564 M 271 0 0 "" NA19138,NA19193 nsv818028 2 71254211 71257416 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416315,nssv1416832,nssv1416909,nssv1416911,nssv1415573,nssv1415584,nssv1417653,nssv1416910,nssv1416831,nssv1417578,nssv1418435,nssv1416314,nssv1416833,nssv1418433,nssv1418434,nssv1416313 M 112 0 16 "" NA18855,NA18856,NA18857,NA18972,NA18992,NA19137,NA19138,NA19139,NA19140,NA19142,NA19192,NA19193,NA19194,NA19238,NA19239,NA19240 nsv818039 2 71254211 71263142 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418134 S 112 0 1 "" NA19144 nsv508148 2 71258963 71340767 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620184 S 4 0 1 "" NA15510 nsv521345 2 71484110 71597184 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697954 S 2026 0 1 "" nsv519545 2 71494846 71570196 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696913 S 2026 0 1 "" nsv526102 2 71539515 71542764 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702350 S 2026 1 0 "" nsv458141 2 71618863 71628149 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535161 S 1557 0 1 "" NINDS_65 nsv525538 2 71623604 71627101 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701674 S 2026 0 1 "" nsv520271 2 71636017 71662162 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv681874,nssv662276 M 2026 2 0 "" nsv520774 2 71642701 71745191 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697602 S 2026 0 1 "" nsv458163 2 71654547 71690770 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535164 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00935 nsv458174 2 71703232 71727421 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535168 S 1557 0 1 "" NINDS_65 nsv520337 2 71821018 71843686 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv683689,nssv663004 M 2026 0 2 "" nsv2772 2 71842644 71876700 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7505 S 9 1 0 "" NA12156 nsv526506 2 72104024 72117661 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702816 S 2026 1 0 "" nsv2773 2 72515563 72560966 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6847 S 9 0 1 "" NA12156 nsv834257 2 72612738 72765203 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441967 S 95 1 0 "" nsv2774 2 72686263 72720894 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1502 S 9 1 0 "" NA19240 nsv2775 2 72764900 72795566 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10213 S 9 1 0 "" NA18956 nsv834259 2 72852773 73025761 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441968 S 95 1 0 "" nsv2776 2 73343509 73393959 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7506,nssv4423 M 9 0 2 "" NA12156,NA12878 nsv2778 2 73507927 73526793 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7507 S 9 0 1 "" NA12156 nsv2779 2 73511786 73545560 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4424 S 9 1 0 "" NA12878 dgv1197e1 2 73628687 73990247 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv7190,essv7799,esv294,essv3371,essv3690,essv2895 M 271 0 0 "" NA18547,NA18558,NA18945,NA18947,NA18953 essv105 2 73728650 73990247 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18968 nsv10013 2 73749836 73752830 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26570 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19007 nsv818044 2 73770839 73818474 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417168 S 112 1 0 "" NA18547 nsv515605 2 73770839 73828327 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv684696,nssv661684,nssv688998,nssv665127,nssv689041,nssv666878,nssv655005,nssv689674,nssv691115,nssv682451,nssv654323,nssv666397,nssv663078,nssv661910,nssv664064,nssv671126,nssv678145,nssv692940,nssv667267,nssv656400,nssv685874,nssv677322,nssv662360,nssv659750,nssv676220,nssv671399,nssv663286,nssv674834,nssv665174 M 2026 0 29 "" nsv441760 2 73787454 73840541 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv818046 2 73811984 73825674 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416425,nssv1416424 M 112 0 2 "" NA18515,NA18516 nsv818047 2 73811984 73828327 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417460 S 112 1 0 "" NA18953 nsv834260 2 73817761 73988175 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441969 S 95 1 0 "" nsv511053 2 73902160 73950632 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618639 S 4 0 0 "" CHM nsv2780 2 73905823 73968903 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9859,nssv2266,nssv1503,nssv6848,nssv5793 M 9 0 5 "" NA12156,NA18507,NA18555,NA19129,NA19240 nsv508842 2 73917502 73950632 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621169,nssv623868,nssv619906 M 4 3 0 "" NA10860,NA15510,NA18994 nsv2781 2 73919555 73953560 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6849,nssv4425,nssv10214 M 9 3 0 "" NA12156,NA12878,NA18956 nsv10024 2 73921335 73948915 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27411,nssv28488,nssv26729,nssv26852,nssv25960,nssv28288,nssv28880,nssv28348,nssv27621,nssv28811,nssv28243,nssv26170,nssv28307,nssv26846,nssv26722,nssv25447,nssv26376,nssv27929,nssv26850,nssv28097,nssv28151,nssv24904,nssv26549,nssv28012,nssv29037 M 31 8 13 Samples from several populations that are part of the HapMap project. "" NA07048,NA10847,NA11830,NA12155,NA12740,NA12872,NA18502,NA18504,NA18517,NA18563,NA18564,NA18572,NA18853,NA18860,NA18972,NA18975,NA19007,NA19132,NA19144,NA19173,NA19221 dgv15n31 2 73921368 73955929 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis nsv471418,nsv471530 M 3 "" nsv482051 2 73922971 73955929 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558412 S 1 1 0 "" KB1 esv33667 2 74039904 74040116 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98782 S 51 1 0 "" 21606 nsv818048 2 74137089 74224735 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416317 S 112 1 0 "" NA18855 nsv2782 2 74179735 74212518 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1504 S 9 1 0 "" NA19240 nsv525117 2 74270556 74286296 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701182 S 2026 0 1 "" nsv834261 2 74303364 74525375 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441970 S 95 0 1 "" dgv1198e1 2 74391579 74482924 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv8807,essv21775,essv9245,essv13870,essv10994,essv2340,essv24155,essv12665,essv13063 M 271 0 0 "" NA10847,NA12239,NA18500,NA18508,NA18852,NA18854,NA18940,NA19128,NA19143 dgv1199e1 2 74391579 74674080 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv10844,essv16907,essv7862,essv4724,essv8945,esv288,essv9315,essv10632,essv16668,essv8343,essv14122,essv9430,essv5395,essv6360,essv14526,essv10928,essv125,essv13523,essv13150,essv15467,essv4003 M 271 0 0 "" NA18505,NA18558,NA18563,NA18609,NA18620,NA18853,NA18855,NA18858,NA18861,NA18871,NA18968,NA18970,NA19102,NA19142,NA19160,NA19200,NA19202,NA19205,NA19208,NA19209 nsv2783 2 74396137 74404281 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7508 S 9 0 1 "" NA12156 nsv2784 2 74503299 74519194 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6850 S 9 0 1 "" NA12156 nsv458185 2 74506669 74670589 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535173 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01296 nsv515851 2 74506669 74670589 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv693287,nssv665015,nssv689583,nssv658499,nssv692381,nssv705125,nssv656920,nssv689708,nssv657048,nssv667345,nssv683977,nssv692261,nssv706079,nssv661202,nssv680015 M 2026 0 15 "" nsv458196 2 74827317 74883736 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535184 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01229 nsv518615 2 74846022 74977305 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696062 S 2026 1 0 "" nsv516265 2 74858396 74872671 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv679562,nssv659127,nssv667178,nssv676299 M 2026 0 4 "" esv2751900 2 74861687 75180719 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6985472,essv6981090,essv6981089,essv6981088 M 771 1 0 "" BEC_351 nsv519007 2 75005123 75009838 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696476 S 2026 0 1 "" nsv834262 2 75046674 75200854 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441971 S 95 1 0 "" nsv526995 2 75055739 75151280 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703370 S 2026 1 0 "" nsv527009 2 75260701 75267135 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703384 S 2026 1 0 "" nsv520917 2 75260701 75278592 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694082 S 2026 1 0 "" dgv32n64 2 75274841 75285920 CNV Loss Wang_et_al_2007 17921354 SNP_array nsv818050,nsv818049 M 112 0 2 "" NA10830,NA12154 nsv525695 2 75274841 75292607 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701854 S 2026 0 1 "" dgv1200e1 2 75275078 75294365 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv22614,esv1158,essv21481 M 271 0 0 "" NA10830,NA12154 nsv438354 2 75278592 75283243 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv471016 S 269 0 1 Samples from several populations that are part of the HapMap project. "" NA12154 nsv10035 2 75296056 75299336 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28211,nssv28184,nssv27014,nssv26708,nssv28017,nssv28910,nssv28293,nssv26869,nssv28338,nssv27729,nssv26185,nssv28397,nssv28147,nssv28528,nssv27016,nssv26849 M 31 16 0 Samples from several populations that are part of the HapMap project. "" NA10839,NA10847,NA10863,NA11830,NA12155,NA12740,NA18502,NA18504,NA18563,NA18564,NA18853,NA18942,NA18972,NA19007,NA19173,NA19240 nsv516509 2 75348837 75417654 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv668759,nssv685581,nssv684477,nssv683995 M 2026 0 4 "" nsv2785 2 75365286 75398326 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7509 S 9 1 0 "" NA12156 nsv508093 2 75569793 75575793 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622347,nssv624275,nssv621525,nssv618543 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv2786 2 75582776 75614582 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10215 S 9 1 0 "" NA18956 dgv1201e1 2 75601060 75924478 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv527,essv4119,essv12684,essv772 M 271 0 0 "" NA18500,NA18555,NA18956 nsv818051 2 75689623 75722410 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416834 S 112 1 0 "" NA19238 nsv458219 2 75689623 75726563 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535206 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01270 nsv441761 2 75690635 75721923 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv1202e1 2 75702144 75825556 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv5856,essv3431 M 271 0 0 "" NA18555,NA18956 dgv152e55 2 75733157 75825600 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv35142,esv34608 M 771 2 0 "" NA18555,NA18956 nsv441762 2 75733560 75826027 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv20n14 2 75734817 75826690 CNV Gain Cooper et al 2008 18776910 SNP_array nsv433355,nsv433353 M 9 2 0 "" NA18555,NA18956 nsv2787 2 75748443 75770118 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7510 S 9 0 1 "" NA12156 nsv438356 2 75756282 75799815 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv471017 S 269 0 1 Samples from several populations that are part of the HapMap project. "" NA18555 nsv834263 2 75756355 75919321 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441972 S 95 1 0 "" nsv213696 2 75811085 75811154 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232274 M 24 "" nsv834264 2 75907087 76080674 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441973 S 95 0 1 "" nsv818052 2 76018931 76024518 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416318 S 112 1 0 "" NA18855 nsv528298 2 76041525 76075472 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704873 S 2026 0 1 "" nsv834265 2 76187266 76362383 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441979,nssv1441975,nssv1441977,nssv1441976,nssv1441978 M 95 5 0 "" nsv523475 2 76244805 76254845 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699236 S 2026 1 0 "" nsv515558 2 76249001 76249392 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv659751,nssv667576,nssv663898,nssv676085,nssv683619,nssv685208,nssv680151 M 2026 0 7 "" nsv519947 2 76449259 76500597 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv661188,nssv677474,nssv659594,nssv696402,nssv687005 M 2026 0 5 "" dgv1203e1 2 76453575 76617009 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv5546,essv8879,esv300,essv19498 M 271 0 0 "" NA12864,NA18508,NA18529 nsv10045 2 76496925 76499926 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28387 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA12155 nsv818053 2 76723433 76756121 CNV Gain+Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416319,nssv1417224 M 112 1 1 "" NA18576,NA18855 dgv1204e1 2 76749556 76771867 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv5894,esv881 M 271 0 0 "" NA18576 esv33650 2 76847395 76861218 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97156 S 51 0 1 "" 22075 dgv464n27 2 76851230 76860756 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv458241,nsv458230 M 1557 0 2 "" HGDP00880,HGDP00899 nsv515527 2 76851230 76867957 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv674312,nssv687716,nssv669215,nssv667771,nssv697829,nssv663832,nssv674255 M 2026 0 7 "" nsv507016 2 76870782 76876782 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623339 S 4 1 0 "" NA18994 nsv458263 2 76888281 76906639 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535227 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01047 nsv520715 2 76933583 76991946 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697571 S 2026 1 0 "" nsv214053 2 76946195 76946195 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232631 M 24 "" nsv458274 2 76967538 77025604 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535238 S 1557 0 1 "" 1780862312_A nsv523910 2 76983798 76985906 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699753 S 2026 0 1 "" nsv525625 2 77007779 77025604 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701774 S 2026 0 1 "" nsv834266 2 77031891 77199159 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441980 S 95 1 0 "" nsv818054 2 77084348 77104420 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416912 S 112 0 1 "" NA19137 dgv1205e1 2 77097511 77120706 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1217,essv6467 M 271 0 0 "" NA18637 nsv10046 2 77097693 77099962 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28201 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18860 nsv519950 2 77124758 77167946 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697142 S 2026 1 0 "" nsv458285 2 77187856 77257146 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535248 S 1557 0 1 "" 1780862355_A nsv523873 2 77209191 77212794 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699715 S 2026 0 1 "" nsv526121 2 77209191 77216778 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702371 S 2026 0 1 "" nsv524535 2 77222252 77256307 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700485 S 2026 1 0 "" nsv458296 2 77238487 77286435 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535257 S 1557 0 1 "" 1787431198_A nsv518504 2 77238487 78084441 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695945 S 2026 0 1 "" nsv2789 2 77251545 77295922 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4652 S 9 0 1 "" NA19129 nsv2790 2 77300718 77333567 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2267 S 9 1 0 "" NA18555 nsv508094 2 77405366 77411366 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621526 S 4 0 1 "" NA15510 nsv834267 2 77446154 77619991 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441981 S 95 0 1 "" nsv818055 2 77567815 77574919 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416913 S 112 0 1 "" NA19137 nsv520560 2 77587539 77636212 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697485 S 2026 0 1 "" nsv2791 2 77594480 77629473 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1505 S 9 1 0 "" NA19240 nsv508095 2 77602325 77608325 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618544 S 4 0 1 "" CHM nsv2792 2 77683206 77692536 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1506 S 9 1 0 "" NA19240 nsv458330 2 77694495 77760536 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535280 S 1557 0 1 "" 1782681110_A nsv834268 2 77697857 77843711 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441982 S 95 1 0 "" dgv1206e1 2 77766753 78013206 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv693,essv17340 M 271 0 0 "" NA18856 nsv10047 2 77805250 77829213 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27033 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19007 essv20936 2 77840772 78013206 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12801 nsv10048 2 77867055 77869903 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28970 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18972 nsv834270 2 77870509 78043783 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441983 S 95 1 0 "" essv636 2 77876528 77905870 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18998 dgv465n27 2 77883438 77951321 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv458352,nsv458341 M 1557 2 0 "" HGDP00491,HGDP00544 nsv10049 2 77886951 77900235 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27144 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA11830 nsv441764 2 77888353 77908321 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv438357 2 77888917 77905870 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv471018 S 269 0 1 Samples from several populations that are part of the HapMap project. "" NA18998 nsv516149 2 77891305 77913221 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv661410,nssv659634,nssv654920,nssv666497,nssv662167,nssv690531,nssv681552,nssv678555,nssv696723,nssv659991 M 2026 10 0 "" esv34214 2 77901100 77902500 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6978302,essv6990220 M 771 1 0 "" NA18998 nsv518421 2 77902044 78006062 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695855 S 2026 1 0 "" nsv2793 2 77905275 77938417 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5794 S 9 1 0 "" NA19129 nsv458363 2 77930999 77960420 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535306 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01318 nsv519956 2 77938953 77981129 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697145 S 2026 1 0 "" nsv2794 2 77968773 78013873 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7511 S 9 0 1 "" NA12156 essv12983 2 78038044 78390176 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18859 dgv1207e1 2 78038044 78622687 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv867,essv7794 M 271 0 0 "" NA18558 nsv517285 2 78110923 78115982 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv653786,nssv687030 M 2026 0 2 "" nsv524980 2 78110923 78130481 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701009 S 2026 0 1 "" essv13127 2 78111390 78296401 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18859 nsv525931 2 78115982 78126421 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702136 S 2026 0 1 "" nsv524102 2 78132908 78473668 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699977 S 2026 0 1 "" esv34750 2 78162800 78346500 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6988265,essv6979906,essv6979907,essv6979908,essv6989128 M 771 0 1 "" NA18859 esv34528 2 78168484 78526798 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6989093,essv6979450,essv6979449,essv6988176 M 771 0 1 "" NA18558 nsv818057 2 78175538 78545535 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417203 S 112 0 1 "" NA18558 essv6862 2 78177603 78551901 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18558 nsv10052 2 78209683 78212624 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28357,nssv29067 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA19132,NA19221 nsv458374 2 78213230 78244461 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535317 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00433 nsv2795 2 78251196 78283854 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5795 S 9 1 0 "" NA19129 nsv458385 2 78321663 78393979 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535325 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00542 nsv213945 2 78330948 78331011 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232523 M 24 "" nsv834271 2 78431357 78622687 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441984 S 95 1 0 "" nsv522260 2 78451321 79662246 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695040 S 2026 1 0 "" nsv214729 2 78469724 78469724 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233307 M 24 "" nsv10053 2 78544410 78548413 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26386 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18537 nsv441765 2 78613731 78633557 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv515641 2 78614303 78628822 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv692941,nssv670401,nssv653264,nssv702164,nssv688864,nssv690257,nssv693720,nssv675295,nssv705612,nssv689857,nssv651931,nssv667657,nssv686978,nssv658384,nssv693832,nssv683344,nssv680016,nssv669848,nssv653410 M 2026 0 19 "" nsv818058 2 78614303 78628822 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415615 S 112 0 1 "" NA12249 nsv458396 2 78654776 78694419 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535330 S 1557 0 1 "" 1780854477_A nsv527755 2 78811924 78831816 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704242 S 2026 0 1 "" nsv521219 2 78818581 78831816 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697851 S 2026 1 0 "" nsv508843 2 78826737 78852937 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618005 S 4 1 0 "" CHM nsv834272 2 78968545 79135131 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441986 S 95 0 1 "" nsv214416 2 78969314 78969649 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232994 M 24 "" nsv508150 2 78982241 79007341 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622812,nssv617460 M 4 0 2 "" CHM,NA18994 nsv526388 2 78999483 79094476 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702686 S 2026 0 1 "" nsv508844 2 79201874 79258426 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623869 S 4 1 0 "" NA18994 nsv2796 2 79220671 79260279 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9570,nssv5796 M 9 0 2 "" NA18507,NA19129 nsv528480 2 79235068 79254211 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705083 S 2026 1 0 "" nsv516978 2 79237870 79254211 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv661411,nssv677362,nssv663287,nssv694428,nssv690046,nssv671853,nssv675639,nssv671177,nssv691539,nssv653370,nssv687587,nssv676264,nssv658881,nssv678944,nssv686531,nssv687364,nssv660738,nssv691385,nssv677450,nssv681124,nssv661685,nssv653544,nssv659752,nssv670247,nssv671587,nssv665362 M 2026 8 18 "" nsv442770 2 79242433 79253754 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv433199 2 79243738 79250584 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463080 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA18507 nsv818059 2 79243738 79250584 CNV Gain+Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417363,nssv1416426,nssv1417103,nssv1417157 M 112 3 1 "" NA18517,NA18529,NA18542,NA18612 nsv818060 2 79243738 79254211 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417675,nssv1417435,nssv1417562,nssv1417135,nssv1417588 M 112 5 0 "" NA18537,NA18952,NA18971,NA18972,NA18994 nsv2797 2 79249913 79251214 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10216 S 9 1 0 "" NA18956 nsv2798 2 79561949 79593929 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1507 S 9 1 0 "" NA19240 nsv458407 2 79662246 79722972 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535341 S 1557 0 1 "" NINDS_160 nsv433201 2 79795226 79801999 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463082 S 9 0 1 "" NA15510 nsv518912 2 79796691 79799485 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694288 S 2026 0 1 "" nsv527416 2 79805799 79812750 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703854 S 2026 1 0 "" nsv528724 2 79822004 79842794 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705378 S 2026 0 1 "" nsv2800 2 79831792 79858786 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1508 S 9 1 0 "" NA19240 nsv528619 2 79843949 79849555 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705248 S 2026 0 1 "" nsv2801 2 79977281 80011820 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4426 S 9 1 0 "" NA12878 nsv516404 2 80087801 80087966 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv662297,nssv691986,nssv668105 M 2026 3 0 "" nsv524592 2 80087801 80088080 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700551 S 2026 1 0 "" nsv437287 2 80139345 80143127 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467168 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19208 nsv458418 2 80172828 80200867 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535352 S 1557 0 1 "" NINDS_54 dgv1208e1 2 80312976 80607537 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv11527,essv17002 M 271 0 0 "" NA19144,NA19173 dgv1209e1 2 80312976 80754119 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv451,essv17150 M 271 0 0 "" NA19171 nsv516819 2 80375508 80376788 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv652221,nssv692033,nssv667028,nssv664900,nssv687752,nssv653463,nssv654729,nssv655754,nssv685981,nssv680596 M 2026 0 10 "" nsv528317 2 80454402 80457145 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704897 S 2026 0 1 "" dgv1210e1 2 80457936 80607537 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv10955,essv12291,essv14512,essv16827 M 271 0 0 "" NA19138,NA19202,NA19205,NA19209 essv7177 2 80457936 80754119 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18547 dgv466n27 2 80531865 80579598 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv458441,nsv458429 M 1557 0 2 "" 1780862484_A,HGDP00964 nsv818061 2 80667959 80682848 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416320 S 112 1 0 "" NA18855 nsv10054 2 80675216 80680351 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28437 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18564 nsv10055 2 80701968 80704284 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28841 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18517 nsv10056 2 80714646 80717241 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28102 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18942 nsv834273 2 80887062 81059606 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441989,nssv1441988,nssv1441987 M 95 2 1 "" nsv516232 2 81147035 81153469 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv666971,nssv658016 M 2026 0 2 "" nsv520106 2 81147035 81171707 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697226 S 2026 0 1 "" nsv834274 2 81186061 81378014 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441990 S 95 0 1 "" nsv520709 2 81338141 81358733 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697568 S 2026 0 1 "" nsv516939 2 81434691 81466585 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv687088,nssv657721,nssv655065,nssv674256,nssv656514,nssv704737,nssv691263,nssv663652,nssv684955,nssv678222 M 2026 0 10 "" nsv508096 2 81578182 81584182 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622348 S 4 0 1 "" NA10860 dgv1211e1 2 81671346 81727952 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv907,essv12032 M 271 0 0 "" NA19116 nsv508097 2 81680128 81686128 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622349 S 4 0 1 "" NA10860 nsv441766 2 81723839 81727952 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv10057 2 81750837 81752361 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26559 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18537 nsv834275 2 81789273 82004839 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441991,nssv1441992 M 95 0 2 "" nsv2802 2 81991291 82032492 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4427,nssv5798,nssv3024 M 9 3 0 "" NA12878,NA18555,NA19129 nsv508845 2 82008823 82013269 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619907 S 4 1 0 "" NA10860 nsv508846 2 82024293 82059393 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621170 S 4 1 0 "" NA15510 nsv508098 2 82056393 82062393 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622350 S 4 0 1 "" NA10860 esv2751901 2 82099577 82220090 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6987428,essv6983820,essv6988718 M 771 1 0 "" BEC_630 dgv467n27 2 82100152 82220090 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv458452,nsv458463 M 1557 2 0 "" 1780862461_A,HGDP01166 nsv515923 2 82119416 82220090 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv665319,nssv668831,nssv655969,nssv693379 M 2026 4 0 "" nsv508151 2 82191013 82194877 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619032 S 4 0 1 "" NA10860 nsv821625 2 82249388 82959784 CNV Loss Sebat_et_al_2004 15273396 ROMA Custom Nimblegen photoprint 85000 probe ROMA oligo array nssv1421268,nssv1421279 M 31 0 2 "" nsv10058 2 82611267 82617926 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27829 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18502 nsv834276 2 82614536 82762667 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441993 S 95 1 0 "" nsv10059 2 82940573 82951803 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26560 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18552 nsv458474 2 83062981 83139909 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535408 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00552 nsv2803 2 83084765 83109967 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5799 S 9 1 0 "" NA19129 nsv510940 2 83092199 83101418 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624374 S 4 0 0 "" NA18994 nsv508848 2 83098412 83101418 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619908 S 4 1 0 "" NA10860 nsv214014 2 83108362 83108362 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232592 M 24 "" dgv468n27 2 83138913 83261862 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv458540,nsv458507,nsv458485,nsv458518,nsv458529,nsv458496 M 1557 0 6 "" 1780854261_A,1780862042_A,1780862176_A,1780862432_A,1782681317_A,NINDS_44 dgv1212e1 2 83160508 83876420 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv19345,esv653,essv22339 M 271 0 0 "" NA06985 esv34966 2 83162200 83734700 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6980241,essv6987743,essv6987744,essv6989158 M 771 0 1 "" NA06985 nsv818062 2 83162244 83757127 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415894 S 112 0 1 "" NA06985 nsv523108 2 83162271 83197395 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698805 S 2026 0 1 "" nsv10060 2 83210303 83212447 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28251 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18860 nsv525554 2 83247473 83455656 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701693 S 2026 0 1 "" nsv214480 2 83311109 83311159 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233058 M 24 "" esv2751902 2 83331331 83509218 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6984463,essv6984464,essv6984465,essv6984466,essv6984467 M 771 1 0 "" BEC_708 nsv520142 2 83502000 83594756 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697245 S 2026 0 1 "" nsv2804 2 83672545 83701532 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4428 S 9 1 0 "" NA12878 nsv10061 2 83699507 83703982 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26391 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18853 nsv524298 2 83706894 83717912 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700199 S 2026 0 1 "" nsv2805 2 83801683 83846745 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7512 S 9 0 1 "" NA12156 nsv507017 2 83816435 83822435 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620718,nssv617565,nssv621997,nssv623340 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv2806 2 83956718 83989015 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1509 S 9 1 0 "" NA19240 nsv520065 2 83992573 83997299 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697203 S 2026 0 1 "" nsv213371 2 84086518 84091626 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv231949 M 24 "" nsv834277 2 84094335 84275275 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441994 S 95 1 0 "" nsv523019 2 84134612 84527130 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698696 S 2026 0 1 "" nsv521750 2 84182280 84241961 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694518 S 2026 1 0 "" nsv2807 2 84291876 84324991 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7513 S 9 1 0 "" NA12156 nsv214623 2 84336271 84336359 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233201 M 24 "" dgv1213e1 2 84643112 84795200 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv347,essv14432 M 271 0 0 "" NA19201 nsv213267 2 84670099 84670391 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv231845 M 24 "" nsv2808 2 84678778 84723537 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7514 S 9 0 1 "" NA12156 nsv214047 2 84749921 84749992 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232625 M 24 "" nsv834278 2 84779283 84944736 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441995 S 95 1 0 "" nsv523412 2 84906766 84907710 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699163 S 2026 0 1 "" nsv527911 2 85007912 85008139 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704417 S 2026 0 1 "" nsv527061 2 85008139 85034206 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703439 S 2026 0 1 "" nsv834279 2 85119111 85316962 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441997 S 95 0 1 "" nsv834281 2 85250194 85423125 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441998 S 95 0 1 "" nsv834282 2 85376052 85552970 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1441999 S 95 1 0 "" nsv2809 2 85382515 85399919 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7515 S 9 0 1 "" NA12156 nsv521146 2 85435199 85436027 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv686601,nssv683024 M 2026 2 0 "" nsv818063 2 85459087 85466920 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417315,nssv1415937 M 112 0 2 "" NA12750,NA18608 nsv7314 2 85481672 85497483 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1510 S 9 0 0 "" NA19240 nsv834283 2 85521158 85667366 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442001,nssv1442000 M 95 0 2 "" nsv7315 2 85636269 85675080 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1511 S 9 0 0 "" NA19240 nsv2811 2 85674614 85702672 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10217 S 9 1 0 "" NA18956 nsv215431 2 85772657 85778273 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv234009 M 24 "" nsv2812 2 85811602 85840925 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7516 S 9 0 1 "" NA12156 nsv213341 2 85850888 85851112 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv231919 M 24 "" nsv527770 2 85861054 85874209 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704259 S 2026 1 0 "" esv2751903 2 86165200 86417111 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6986378,essv6988641,essv6983238,essv6983239,essv6983240 M 771 1 0 "" BEC_558 esv32617 2 86168299 86171943 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99551 S 51 0 1 "" 22335 nsv522891 2 86190650 86193563 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698549 S 2026 0 1 "" nsv458563 2 86203999 86419346 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535478 S 1557 1 0 "" NINDS_47 nsv458574 2 86297386 86419346 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535486 S 1557 1 0 "" 1780862345_A nsv2813 2 86619452 86652961 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7517 S 9 1 0 "" NA12156 nsv2814 2 86685596 86719376 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7518 S 9 1 0 "" NA12156 nsv818064 2 86730526 86731067 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417373 S 112 0 1 "" NA18944 nsv10063 2 86852646 86996018 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27163 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19007 nsv521780 2 86885976 86906377 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694548 S 2026 0 1 "" nsv458585 2 86885976 87019869 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535497 S 1557 1 0 "" 1780862041_A nsv7316 2 86913986 87197276 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6851 S 9 0 0 "" NA12156 nsv516466 2 86996574 87019869 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv658149,nssv668557,nssv702271 M 2026 0 3 "" dgv1214e1 2 87017102 88135226 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv19034,essv24542,esv652,essv24111,essv23106 M 271 0 0 "" NA07034,NA07048,NA11831,NA12043 nsv519198 2 87019869 87610458 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696683 S 2026 0 1 "" esv33176 2 87033773 87236988 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101441,essv97810,essv97398,essv99039,essv96592,essv98068,essv99171,essv100365 M 51 0 8 "" 21603,21837,21879,21938,22011,22259,22275,22300 dgv1215e1 2 87039100 87881342 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv20777,essv23503,essv21761,essv4465,essv19990,essv24828,essv18448,essv22458,essv16787,essv13400,essv3780,essv17455,essv3531,essv22188 M 271 0 0 "" NA07000,NA07034,NA07048,NA11831,NA12043,NA12044,NA12146,NA12239,NA12761,NA18552,NA18872,NA18961,NA18965 nsv2815 2 87043358 87063267 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6852 S 9 0 1 "" NA12156 nsv10064 2 87044084 87064394 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27293,nssv28234,nssv29000,nssv26862 M 31 4 0 Samples from several populations that are part of the HapMap project. "" NA10839,NA18572,NA18972,NA19007 nsv508849 2 87061249 87119774 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623870 S 4 1 0 "" NA18994 dgv1216e1 2 87157420 87355460 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv15124,essv16875,essv11526,essv16449,essv14702,essv10546,essv12494,essv10045 M 271 0 0 "" NA19099,NA19129,NA19139,NA19159,NA19173,NA19205,NA19207,NA19240 dgv1217e1 2 87157420 87446513 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv9036,essv9400,essv13855,essv14492,essv14959,essv12633 M 271 0 0 "" NA18500,NA18853,NA18854,NA18870,NA19132,NA19202 nsv10065 2 87167299 87257599 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26719,nssv27010,nssv27413 M 31 3 0 Samples from several populations that are part of the HapMap project. "" NA07048,NA18552,NA19007 nsv507018 2 87170419 87176419 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621998 S 4 1 0 "" NA10860 nsv10066 2 87256381 87487274 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26718,nssv25166,nssv27140,nssv27013,nssv28871,nssv27389,nssv26859,nssv24901,nssv28343,nssv29030 M 31 8 2 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10863,NA12802,NA18504,NA18517,NA18537,NA18552,NA18972,NA18980 nsv442780 2 87285551 87325650 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv507019 2 87290585 87296585 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620719 S 4 1 0 "" NA15510 nsv438358 2 87325870 87355774 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv471020,nssv471022,nssv471025,nssv471023,nssv471019,nssv471021 M 269 0 3 Samples from several populations that are part of the HapMap project. "" NA10847,NA12146,NA12239 dgv33n64 2 87342385 87615568 CNV Gain Wang_et_al_2007 17921354 SNP_array nsv818065,nsv818066 M 112 4 0 "" NA12043,NA12044,NA12146,NA12239 nsv516958 2 87342385 88139106 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694014,nssv653508,nssv689128,nssv681085,nssv684423,nssv679431,nssv661587 M 2026 3 4 "" nsv438359 2 87385777 87402389 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv471027,nssv471026,nssv471028,nssv471029 M 269 0 4 Samples from several populations that are part of the HapMap project. "" NA07048,NA07055,NA10847,NA12239 dgv59n17 2 87397032 87542875 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437468,nsv437457 M 60 0 2 "" NA07048,NA10847 nsv442782 2 87426037 87434600 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv1218e1 2 87428555 87583439 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv17325,essv10586 M 271 0 0 "" NA18856,NA19240 nsv442785 2 87466971 87469919 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv10067 2 87487289 87498220 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv29097,nssv26858 M 31 1 1 Samples from several populations that are part of the HapMap project. "" NA18537,NA19221 nsv7317 2 87488063 91218125 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1512,nssv9574,nssv5800 M 9 0 0 "" NA18507,NA19129,NA19240 nsv2816 2 87492825 87499957 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10218 S 9 1 0 "" NA18956 nsv10068 2 87496929 87810494 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27523,nssv28406,nssv27270,nssv27274,nssv28284,nssv27924,nssv27023,nssv27153 M 31 2 5 Samples from several populations that are part of the HapMap project. "" NA07048,NA10839,NA11830,NA18502,NA18552,NA18975,NA19132 nsv508850 2 87520394 87571962 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618006,nssv619909,nssv623871 M 4 3 0 "" CHM,NA10860,NA18994 nsv834284 2 87520902 87670065 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442006,nssv1442009,nssv1442010,nssv1442002,nssv1442008,nssv1442005,nssv1442004,nssv1442003 M 95 7 1 "" nsv2817 2 87526011 87527083 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7519 S 9 1 0 "" NA12156 nsv2818 2 87541447 87585099 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2270,nssv9571,nssv10219,nssv2268,nssv5801,nssv4430 M 9 5 0 "" NA12878,NA18507,NA18555,NA18956,NA19129 nsv2819 2 87549450 87604890 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2269,nssv6853 M 9 0 2 "" NA12156,NA18555 nsv834285 2 87570216 87705860 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442012,nssv1442014,nssv1442013,nssv1442015,nssv1442011,nssv1442017,nssv1442016 M 95 7 0 "" nsv821626 2 87598179 87714845 CNV Gain Sebat_et_al_2004 15273396 ROMA Custom Nimblegen photoprint 85000 probe ROMA oligo array nssv1421291 S 31 1 0 "" nsv818068 2 87610458 87615568 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416572 S 112 1 0 "" NA10857 esv33317 2 87610879 87844650 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101786,essv99430 M 51 2 0 "" 21909,22335 nsv2820 2 87645526 87652408 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7520 S 9 0 1 "" NA12156 nsv442790 2 87659080 87667240 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" essv14988 2 87659623 87881342 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18870 nsv834286 2 87671835 87843199 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442019,nssv1442021,nssv1442022,nssv1442020,nssv1442023,nssv1442024 M 95 6 0 "" nsv508099 2 87687592 87693592 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621527 S 4 0 1 "" NA15510 nsv441767 2 87726479 87811147 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv507020 2 87759594 87765594 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621999,nssv620720,nssv623341 M 4 3 0 "" NA10860,NA15510,NA18994 nsv834287 2 87778921 87956887 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442025 S 95 1 0 "" nsv10069 2 87809943 87880189 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27390,nssv28007,nssv27283,nssv29127 M 31 4 0 Samples from several populations that are part of the HapMap project. "" NA07048,NA18502,NA18552,NA19221 nsv834288 2 87886491 88114190 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442027,nssv1442028,nssv1442026 M 95 3 0 "" nsv10070 2 87963455 88100866 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27022,nssv27633,nssv27143,nssv29060,nssv27394,nssv28477,nssv28152,nssv28261,nssv25446,nssv28901,nssv27403,nssv27146 M 31 12 0 Samples from several populations that are part of the HapMap project. "" NA10863,NA11830,NA12740,NA12802,NA18517,NA18537,NA18552,NA18564,NA18942,NA18972,NA18975,NA19240 nsv10071 2 88116083 88129081 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28202,nssv27502,nssv25181,nssv27026,nssv27612,nssv28961,nssv27525,nssv27515,nssv27276,nssv29090,nssv28334 M 31 10 0 Samples from several populations that are part of the HapMap project. "" NA07048,NA10839,NA12740,NA18517,NA18552,NA18572,NA18942,NA18972,NA18980,NA19007 esv32626 2 88142621 88142968 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98792 S 51 0 1 "" 21606 nsv441768 2 88151693 88170079 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv834289 2 88221857 88390108 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442030 S 95 1 0 "" nsv507021 2 88319948 88325948 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623342 S 4 1 0 "" NA18994 nsv2822 2 88352160 88396462 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2271 S 9 0 1 "" NA18555 nsv2823 2 88403423 88448318 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7521 S 9 0 1 "" NA12156 nsv458596 2 88456849 88684402 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535508 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00753 nsv507022 2 88707465 88713465 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623343 S 4 1 0 "" NA18994 nsv834290 2 88825484 89033039 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442031 S 95 0 1 "" nsv214854 2 88868509 88871562 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233432 M 24 "" nsv2824 2 88904163 89337191 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7524,nssv5803,nssv5802,nssv10220,nssv9572,nssv11014,nssv1514,nssv2273,nssv6854,nssv7523,nssv1513,nssv6856,nssv4434,nssv2275 M 9 0 8 "" NA12156,NA12878,NA15510,NA18507,NA18555,NA18956,NA19129,NA19240 nsv508152 2 88909631 88937855 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619034 S 4 0 1 "" NA10860 nsv213270 2 88914979 88915148 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv231848 M 24 "" nsv7318 2 88934376 89943649 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4435,nssv4432,nssv4433,nssv6855,nssv9349,nssv2272,nssv4431,nssv11015 M 9 0 0 "" NA12156,NA12878,NA15510,NA18517,NA18555 nsv190 2 88945353 89002460 CNV Loss Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv190 S 1 0 1 "" NA15510 nsv508153 2 88950234 89305452 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622813,nssv620185,nssv619035 M 4 0 3 "" NA10860,NA15510,NA18994 nsv517043 2 88964393 91596646 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv690156,nssv686556,nssv670248,nssv671894,nssv656639,nssv686778,nssv669095,nssv681999,nssv671358,nssv660539,nssv655507,nssv680774,nssv670916,nssv666132,nssv684720,nssv666498,nssv667124,nssv658017,nssv658301,nssv681397,nssv665613,nssv663482,nssv655790,nssv694675,nssv682200,nssv687588,nssv693572,nssv652137,nssv664354,nssv684999,nssv697350,nssv662050,nssv666516,nssv652559,nssv673483,nssv661792,nssv678348,nssv651781,nssv654761,nssv701824,nssv692782,nssv669343,nssv681939,nssv667322,nssv670801,nssv658612,nssv668013,nssv687889,nssv664567,nssv663602,nssv651946,nssv660251,nssv670839,nssv690215,nssv679563,nssv656251,nssv654343,nssv667727,nssv664165,nssv682754,nssv652823,nssv683620,nssv661229,nssv679713,nssv662168,nssv672080,nssv651846,nssv684119,nssv676934,nssv674054,nssv683806,nssv677131,nssv675769,nssv669660,nssv671526,nssv661565,nssv656337,nssv686902,nssv673379,nssv677675,nssv672112,nssv655559,nssv681466,nssv662429,nssv687449,nssv671494,nssv662847,nssv699239,nssv656146,nssv673712,nssv653680,nssv686579,nssv670985,nssv666238,nssv651907,nssv672051,nssv679432,nssv687328,nssv664007,nssv661203,nssv655591,nssv688160,nssv693938,nssv668048,nssv668106,nssv677264,nssv658150,nssv681975,nssv663612,nssv687753,nssv654404,nssv673437,nssv676236,nssv678395,nssv665128,nssv693259,nssv658722,nssv675446,nssv691020,nssv671715,nssv687266,nssv655609,nssv672814,nssv655216,nssv686718,nssv696981,nssv660182 M 2026 23 104 "" dgv17e24 2 88971725 89136778 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH esv33768,esv32842 M 51 50 0 "" 21603,21606,21616,21618,21634,21656,21659,21693,21721,21772,21791,21802,21805,21808,21817,21837,21841,21847,21863,21872,21879,21909,21911,21932,21938,21939,21944,21972,22007,22011,22075,22085,22086,22127,22128,22170,22217,22231,22233,22259,22261,22275,22278,22286,22298,22300,22335,22352,22371,22394 nsv438360 2 88976386 88986385 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv471047,nssv471034,nssv471044,nssv471039,nssv471042,nssv471032,nssv471038,nssv471033,nssv471030,nssv471031,nssv471043,nssv471040,nssv471041,nssv471037,nssv471045,nssv471036,nssv471048 M 269 0 17 Samples from several populations that are part of the HapMap project. "" NA06985,NA06993,NA06994,NA07000,NA10835,NA10839,NA10855,NA11839,NA11992,NA11993,NA11994,NA12005,NA12044,NA12236,NA12248,NA12707,NA12872 nsv834292 2 88979593 89141717 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442042,nssv1442052,nssv1442056,nssv1442043,nssv1442049,nssv1442046,nssv1442047,nssv1442055,nssv1442037,nssv1442038,nssv1442054,nssv1442036,nssv1442044,nssv1442045,nssv1442058,nssv1442057,nssv1442048,nssv1442041,nssv1442035,nssv1442032,nssv1442053,nssv1442050,nssv1442034,nssv1442033,nssv1442039 M 95 0 25 "" nsv821627 2 88992551 91290827 CNV Gain Sebat_et_al_2004 15273396 ROMA Custom Nimblegen photoprint 85000 probe ROMA oligo array nssv1421324,nssv1421346,nssv1421344,nssv1421342,nssv1421343,nssv1421336,nssv1421337,nssv1421340,nssv1421339,nssv1421313,nssv1421338,nssv1421302,nssv1421347,nssv1421335,nssv1421345 M 31 15 0 "" nsv201 2 89015370 89269443 OTHER Inversion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv201 S 1 0 0 "" NA15510 nsv438361 2 89031053 89112616 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv471050,nssv471055,nssv471052,nssv471061,nssv471058,nssv471054,nssv471056,nssv471063,nssv471062,nssv471049,nssv471053,nssv471064,nssv471059,nssv471060,nssv471051 M 269 0 15 Samples from several populations that are part of the HapMap project. "" NA06993,NA06994,NA07048,NA10830,NA10835,NA10839,NA10855,NA10856,NA11839,NA12005,NA12236,NA12248,NA12760,NA12872,NA12873 nsv834293 2 89227897 89442293 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442063,nssv1442072,nssv1442065,nssv1442064,nssv1442071,nssv1442069,nssv1442059,nssv1442066,nssv1442070,nssv1442076,nssv1442077,nssv1442060,nssv1442068,nssv1442067,nssv1442075,nssv1442061 M 95 0 16 "" nsv469754 2 89279513 89435791 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649775 M 265 0 2 Samples from several populations that are part of the HapMap project. "" esv33526 2 89291794 89314632 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98120 S 51 1 0 "" 22259 esv32965 2 89321530 89960518 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97578,essv98234,essv99771,essv99833,essv98041,essv100511,essv100309,essv94236 M 51 3 5 "" 21616,21772,22086,22259,22298,22300,22394 nsv834294 2 89362532 89463442 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442082,nssv1442078,nssv1442081,nssv1442080,nssv1442079 M 95 0 5 "" nsv7319 2 89438708 91208466 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2278,nssv10221,nssv1516,nssv2276,nssv4436,nssv5805,nssv6858 M 9 0 0 "" NA12156,NA12878,NA18555,NA18956,NA19129,NA19240 nsv213540 2 89447127 89447263 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232118 M 24 "" nsv214100 2 89447271 89447406 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232678 M 24 "" nsv818069 2 89448542 89935925 CNV Gain+Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417611,nssv1416583,nssv1417714 M 112 1 2 "" NA12044,NA18978,NA18999 nsv2825 2 89630118 89703211 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6857 S 9 0 1 "" NA12156 nsv442795 2 89694514 89970218 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv469896 2 89716501 89891147 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649917 M 265 6 24 Samples from several populations that are part of the HapMap project. "" nsv818070 2 89733531 89935925 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417629,nssv1416914,nssv1416915,nssv1416005,nssv1417663,nssv1417247,nssv1416116 M 112 0 7 "" NA06991,NA06993,NA18577,NA18987,NA18994,NA19137,NA19139 nsv438362 2 89733823 89963223 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv471065,nssv471070,nssv471074,nssv471072,nssv471067,nssv471081,nssv471069,nssv471076,nssv471075,nssv471071,nssv471077,nssv471066,nssv471073,nssv471078,nssv471080 M 269 0 10 Samples from several populations that are part of the HapMap project. "" NA06991,NA06993,NA10831,NA12802,NA12814,NA12865,NA12875,NA18500,NA18505,NA19137 nsv458607 2 89740315 89815603 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535519 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00105 nsv458618 2 89740315 89935925 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535530 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00890 dgv1219e1 2 89740700 89963957 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv12150,essv9278,essv24943,essv1314,essv24354,essv5972,essv18887,essv23153,essv13332 M 271 0 0 "" NA10831,NA10839,NA12707,NA12717,NA18500,NA18505,NA18552,NA18973,NA19137 dgv1220e1 2 89740700 91387049 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv184,essv3568,essv2148,essv23281,essv19121,essv952,essv3502,essv5776,essv21885,essv20691,essv7938,essv24322,essv18040,essv24457,essv16378,essv5963,essv17698,essv7518,essv2121,essv3591 M 271 0 0 "" NA06991,NA06993,NA07345,NA10835,NA11882,NA12044,NA12802,NA12865,NA18532,NA18540,NA18577,NA18959,NA18969,NA18978,NA18981,NA18987,NA18994,NA18999,NA19172,NA19209 dgv1221e1 2 89740700 91696901 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1066,essv2358,essv6419,essv14923,essv11370,essv13319,essv12874,esv624,essv9581,essv8983,essv8560 M 271 0 0 "" NA18501,NA18502,NA18503,NA18507,NA18545,NA18990,NA18995,NA19127,NA19129,NA19139 nsv433202 2 89772948 89815603 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463083 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA19129 nsv834295 2 89792857 89962288 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442083 S 95 1 0 "" nsv834296 2 89797813 90005422 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442084,nssv1442095,nssv1442089,nssv1442094,nssv1442086,nssv1442088,nssv1442087,nssv1442090,nssv1442091,nssv1442092,nssv1442093 M 95 0 11 "" nsv818071 2 89801612 89935925 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415741,nssv1415740 M 112 0 2 "" NA12865,NA12875 nsv437480 2 89809671 89829772 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467361 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA06991 dgv21n14 2 89868913 89973576 CNV Loss Cooper et al 2008 18776910 SNP_array nsv433203,nsv433204 M 9 0 2 "" NA18507,NA19129 essv3620 2 89878936 89963957 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18966 dgv60n17 2 89902310 89950063 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437502,nsv437491 M 60 0 2 "" NA06991,NA12802 dgv1222e1 2 89918120 89963957 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv24167,essv13262 M 271 0 0 "" NA12751,NA19201 nsv2826 2 89925026 89993238 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5804,nssv9573,nssv10222 M 9 0 3 "" NA18507,NA18956,NA19129 dgv469n27 2 89932105 89935925 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv458629,nsv458651,nsv458663,nsv458640 M 1557 0 4 "" HGDP00521,HGDP00607,HGDP00640,HGDP00694 nsv818072 2 89932105 89935925 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415616,nssv1415618,nssv1415938 M 112 0 3 "" NA10835,NA12248,NA12751 nsv2827 2 89959209 89972263 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2277,nssv1515 M 9 2 0 "" NA18555,NA19240 nsv10072 2 90000164 91038027 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28311 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19240 dgv1223e1 2 91016978 91211972 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv3038,essv12820,essv426,essv15497 M 271 0 0 "" NA18505,NA18952,NA18981,NA19120 dgv1224e1 2 91016978 91539838 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1854,essv1285,essv17591,essv4737,essv11577,essv20060 M 271 0 0 "" NA07048,NA12762,NA18620,NA18976,NA18995,NA19173 nsv10074 2 91038027 91041105 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28092 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18502 nsv507023 2 91042113 91048113 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617566 S 4 1 0 "" CHM nsv834297 2 91063081 91117494 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442097 S 95 1 0 "" nsv10075 2 91093617 91099876 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv29120,nssv27625 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18552,NA18972 nsv10076 2 91101386 91107440 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28598,nssv28301,nssv25184 M 31 3 0 Samples from several populations that are part of the HapMap project. "" NA18860,NA19144,NA19173 nsv2828 2 91107438 91130544 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6859,nssv1517,nssv5806,nssv2279 M 9 4 0 "" NA12156,NA18555,NA19129,NA19240 nsv508851 2 91108116 91144055 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619910 S 4 1 0 "" NA10860 nsv10077 2 91134771 91149454 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28361 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19240 essv19413 2 91159351 91243749 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA11840 nsv2829 2 91159674 91214496 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1518,nssv11016,nssv10223,nssv4437,nssv2280,nssv9350 M 9 0 6 "" NA12878,NA15510,NA18517,NA18555,NA18956,NA19240 nsv10078 2 91163145 91173852 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27733,nssv29157 M 31 1 1 Samples from several populations that are part of the HapMap project. "" NA18552,NA19221 nsv212 2 91168584 91214496 CNV Loss Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv212 S 1 0 1 "" NA15510 nsv213368 2 91206170 91206945 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv231946 M 24 "" dgv1225e1 2 91214888 91539838 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv7528,essv7816,essv17184,essv19529,essv21564 M 271 0 0 "" NA12864,NA12873,NA18545,NA18558,NA19171 essv16223 2 91253786 91411838 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19161 nsv10079 2 91264355 91276252 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv29187 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19221 nsv2830 2 91275104 91308309 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4438 S 9 1 0 "" NA12878 nsv10080 2 91294465 91296931 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv29217 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19221 nsv834298 2 91298566 91448461 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442098 S 95 0 1 "" nsv10081 2 91333845 91348110 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27152,nssv28446,nssv27720,nssv25706,nssv28351,nssv28991,nssv27273 M 31 6 1 Samples from several populations that are part of the HapMap project. "" NA07048,NA10863,NA12872,NA18517,NA18537,NA18860,NA19132 dgv1226e1 2 91361149 91677266 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv18184,essv12180,essv3886,essv494 M 271 0 0 "" NA12057,NA18952,NA18994,NA19101 nsv10082 2 91382689 91394941 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28486,nssv28400,nssv28427,nssv27282,nssv25951 M 31 4 1 Samples from several populations that are part of the HapMap project. "" NA12155,NA12872,NA18537,NA18860,NA19132 nsv10083 2 91449791 91468506 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv29247 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19221 nsv10085 2 91489674 91597201 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25464,nssv27402,nssv28142,nssv27506 M 31 1 3 Samples from several populations that are part of the HapMap project. "" NA11830,NA18502,NA18537,NA19144 nsv10086 2 91613205 91623952 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25705 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA12802 nsv834299 2 91665800 91688035 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442099 S 95 1 0 "" nsv10087 2 94762412 94838837 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28197 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18563 essv23304 2 94780673 94972832 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12264 dgv1227e1 2 94780673 95041982 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv11561,esv611 M 271 0 0 "" NA19173 nsv10088 2 94850330 94878542 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv29150,nssv28467,nssv27833,nssv28526,nssv11490 M 31 3 2 Samples from several populations that are part of the HapMap project. "" NA12155,NA18552,NA18972,NA19132,NA19221 nsv10089 2 94946626 94978440 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27505,nssv28507,nssv27514,nssv27393 M 31 3 0 Samples from several populations that are part of the HapMap project. "" NA10863,NA12155,NA18537 nsv482052 2 94959106 94964442 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558413 S 1 1 0 "" KB1 nsv10090 2 94984352 95000072 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26564,nssv27616,nssv27820,nssv28383,nssv27396 M 31 0 5 Samples from several populations that are part of the HapMap project. "" NA07048,NA10839,NA11830,NA12740,NA18853 nsv10091 2 95017538 95029663 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28247 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18563 nsv2831 2 95039441 95084204 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7525 S 9 0 1 "" NA12156 nsv441769 2 95152848 95157340 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv528011 2 95353092 95478885 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704539 S 2026 0 1 "" dgv1228e1 2 95392012 95574433 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv51,essv20018 M 271 0 0 "" NA07048 nsv7320 2 95483147 95773854 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10224,nssv11017 M 9 0 0 "" NA15510,NA18956 nsv834300 2 95509841 95759431 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442102,nssv1442101,nssv1442100 M 95 3 0 "" nsv222 2 95520061 95773837 OTHER Inversion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv222 S 1 0 0 "" NA15510 nsv516044 2 95572833 96105252 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv677534,nssv665872,nssv697124,nssv704059 M 2026 2 2 "" nsv510883 2 95575178 95676843 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618603 S 4 0 0 "" CHM nsv834301 2 95707636 95849120 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442103 S 95 1 0 "" nsv10092 2 95793351 95894718 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28192,nssv11520 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA18502,NA19221 nsv7322 2 95848673 96109749 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1519 S 9 0 0 "" NA19240 nsv834303 2 95854809 95973578 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442104 S 95 1 0 "" nsv834304 2 95915419 96089346 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442105 S 95 1 0 "" nsv10093 2 95946033 96005209 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27156,nssv25461 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18572,NA18980 nsv508154 2 95956210 96031799 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622814 S 4 0 1 "" NA18994 nsv2833 2 95973364 95991506 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1520 S 9 1 0 "" NA19240 nsv818073 2 95976725 96105252 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415619 S 112 1 0 "" NA12248 nsv508100 2 96055916 96061916 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621528 S 4 0 1 "" NA15510 nsv2834 2 96194799 96206984 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2281 S 9 0 1 "" NA18555 nsv834305 2 96270772 96441350 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442108,nssv1442106,nssv1442109 M 95 3 0 "" nsv525780 2 96280788 96280908 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701955 S 2026 0 1 "" nsv508155 2 96356569 96560176 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620186 S 4 0 1 "" NA15510 nsv2835 2 96577949 96608888 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv11018 S 9 1 0 "" NA15510 nsv469775 2 96662800 96834365 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649796 M 265 0 1 Samples from several populations that are part of the HapMap project. "" nsv834306 2 96662989 96834812 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442110 S 95 0 1 "" nsv834307 2 96743321 96901140 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442111 S 95 0 1 "" nsv526313 2 96755366 97082493 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702597 S 2026 0 1 "" essv10696 2 96992983 97492237 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18855 esv718 2 96992983 97795025 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent + Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 "" esv32727 2 97038362 97065849 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99809,essv99431 M 51 1 1 "" 22086,22335 dgv1229e1 2 97112914 97342494 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv24225,essv5380,essv7611,essv23345,essv24429,essv24991,essv251 M 271 0 0 "" NA10839,NA10856,NA12707,NA12750,NA18545,NA18563,NA18948 nsv834308 2 97125794 97398460 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442112 S 95 1 0 "" essv17393 2 97130485 97476218 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18855 nsv10094 2 97182781 97197315 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28392,nssv28638,nssv25723,nssv28577,nssv26723,nssv28596,nssv27928,nssv28440,nssv27915,nssv27741,nssv26176,nssv27724,nssv28252,nssv28517,nssv28410,nssv26848,nssv27635,nssv27624,nssv28423,nssv29021,nssv27615,nssv27508,nssv25950,nssv25720,nssv29180,nssv28297,nssv27286,nssv27501 M 31 0 28 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10847,NA10863,NA11830,NA12155,NA12740,NA12802,NA12872,NA18504,NA18517,NA18537,NA18552,NA18563,NA18564,NA18572,NA18853,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19144,NA19173,NA19240 nsv517613 2 97190052 97483251 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv656704,nssv693210,nssv668789,nssv689201,nssv689955,nssv658433,nssv687818,nssv652513,nssv661881,nssv680820,nssv654921,nssv671267 M 2026 3 9 "" nsv818074 2 97190052 97483251 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416321 S 112 0 1 "" NA18855 nsv522486 2 97190052 97724009 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705853 S 2026 1 0 "" esv32762 2 97204666 97211518 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99078 S 51 0 1 "" 21938 nsv10096 2 97224590 97268902 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28480,nssv29051,nssv27743,nssv28463 M 31 2 2 Samples from several populations that are part of the HapMap project. "" NA10839,NA18517,NA18860,NA19007 nsv213262 2 97239708 97244081 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv231840 M 24 "" nsv441770 2 97252262 97268726 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv10097 2 97279637 97339539 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25965,nssv28083,nssv27998,nssv29081,nssv27611,nssv27843,nssv25968,nssv27618,nssv27726,nssv27406,nssv27841 M 31 4 7 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA12740,NA18517,NA18572,NA18975,NA18980,NA19007,NA19144 nsv7323 2 97286897 97656192 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2282,nssv5808,nssv6860,nssv9575,nssv10225,nssv1522,nssv1521,nssv4440 M 9 0 0 "" NA12156,NA12878,NA18507,NA18555,NA18956,NA19129,NA19240 essv14455 2 97305870 97492237 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19201 essv18990 2 97305870 97795025 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12005 nsv458674 2 97472228 97483251 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535586 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00788 essv17999 2 97472228 97733045 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12005 esv33267 2 97479975 97483223 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99464 S 51 1 0 "" 22335 nsv10098 2 97503946 97505858 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28450 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19240 nsv214209 2 97567811 97567901 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232787 M 24 "" nsv10099 2 97580250 97606608 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27826,nssv28133,nssv29111,nssv27938 M 31 4 0 Samples from several populations that are part of the HapMap project. "" NA07048,NA12740,NA18517,NA19007 nsv442803 2 97599265 97620228 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv508852 2 97599460 97599460 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619911 S 4 1 0 "" NA10860 esv32869 2 97599749 97651071 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101490 S 51 0 1 "" 21603 nsv10100 2 97600155 97610692 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26190,nssv27518 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18572,NA18980 nsv10101 2 97613553 97615398 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28432,nssv29141,nssv26193,nssv28021,nssv11550,nssv26382,nssv28617,nssv28242,nssv28183,nssv29210,nssv28520,nssv27936,nssv28636,nssv28490,nssv28011,nssv28678,nssv27921,nssv27719,nssv27732,nssv27824,nssv27012,nssv27628,nssv28587,nssv28503 M 31 24 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10847,NA11830,NA12155,NA12740,NA12872,NA18502,NA18504,NA18517,NA18537,NA18552,NA18564,NA18572,NA18860,NA18972,NA18975,NA19007,NA19132,NA19144,NA19173,NA19221,NA19240 nsv10102 2 97622901 97625393 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28472 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18504 nsv2836 2 97623619 97644652 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9860,nssv10227,nssv10226 M 9 2 0 "" NA18507,NA18956 nsv10103 2 97677320 97702182 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11580 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19221 nsv2837 2 97769444 97803784 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4441 S 9 1 0 "" NA12878 esv33510 2 97775621 97799820 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98777,essv97253,essv99926 M 51 3 0 "" 21606,22075,22086 nsv10104 2 97798790 97803670 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28676 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19132 dgv222n21 2 97862201 98284721 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv521568,nsv526360 M 2026 2 0 "" nsv2838 2 97953848 97987990 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7526 S 9 1 0 "" NA12156 nsv2839 2 98033318 98064505 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4442 S 9 1 0 "" NA12878 nsv518056 2 98045360 98614814 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695467 S 2026 1 0 "" nsv834309 2 98101822 98252356 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442113 S 95 1 0 "" nsv527817 2 98159561 98249951 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704312 S 2026 0 1 "" nsv818075 2 98314015 98330557 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416323,nssv1416322 M 112 0 2 "" NA18856,NA18857 nsv517669 2 98314015 98348479 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv666946,nssv652771,nssv686841,nssv666827,nssv702053,nssv676112 M 2026 0 6 "" nsv437289 2 98314015 98350037 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467170 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18521 nsv10105 2 98321042 98325248 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28716 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19132 nsv438363 2 98330557 98344443 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv471082,nssv471083 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA18521,NA18523 nsv2840 2 98575452 98620708 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7527 S 9 0 1 "" NA12156 nsv2841 2 98755392 98800880 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6861 S 9 0 1 "" NA12156 nsv520854 2 98828275 98832238 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694404 S 2026 0 1 "" nsv2842 2 98878735 98910475 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2283,nssv4443 M 9 2 0 "" NA12878,NA18555 nsv834310 2 98992350 99168517 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442116,nssv1442114,nssv1442115 M 95 2 1 "" nsv2844 2 99052580 99097279 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5809 S 9 0 1 "" NA19129 nsv214239 2 99211483 99211818 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232817 M 24 "" dgv470n27 2 99286251 99381485 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv458685,nsv458696 M 1557 2 0 "" HGDP00015,HGDP00136 nsv515702 2 99286251 99381485 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv664473,nssv668274,nssv677899,nssv671985 M 2026 4 0 "" esv2751904 2 99306400 99372516 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6986132,essv6982287,essv6982288,essv6982289 M 771 1 0 "" BEC_411 nsv524466 2 99410604 99490069 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700400 S 2026 0 1 "" esv33974 2 99562487 99563535 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101499,essv97570,essv94430,essv95721,essv95674,essv98983,essv92909,essv98559,essv99974,essv99850,essv97993,essv100408,essv96393 M 51 4 7 "" 21603,21616,21808,21841,21938,21939,22085,22086,22259,22300,22371 dgv1230e1 2 99839409 100005193 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv23476,essv22178,essv20030,essv21804,esv178,essv15019,essv16783,essv17464 M 271 0 0 "" NA07034,NA07048,NA12043,NA12044,NA12239,NA18870,NA18872 nsv2845 2 99880344 99925076 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2284 S 9 0 1 "" NA18555 nsv2846 2 100040134 100073757 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7528 S 9 1 0 "" NA12156 nsv458707 2 100146296 100212008 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535619 S 1557 1 0 "" 1780862592_A nsv2847 2 100154381 100184667 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7529 S 9 0 1 "" NA12156 nsv2848 2 100172993 100203858 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10228 S 9 1 0 "" NA18956 nsv527481 2 100212008 100221524 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703928 S 2026 0 1 "" nsv834311 2 100275435 100448554 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442119,nssv1442117 M 95 1 1 "" nsv834312 2 100502956 100696684 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442123,nssv1442120,nssv1442122,nssv1442121 M 95 0 4 "" nsv2849 2 100635692 100668807 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7530 S 9 1 0 "" NA12156 nsv834314 2 100669458 100868995 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442124 S 95 1 0 "" nsv526204 2 100762676 100763845 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702467 S 2026 0 1 "" nsv834315 2 100843014 101007948 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442125 S 95 1 0 "" nsv834316 2 100991566 101190019 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442126 S 95 1 0 "" nsv519123 2 101115244 101122102 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696598 S 2026 0 1 "" nsv834317 2 101130637 101290195 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442127 S 95 0 1 "" nsv2850 2 101230897 101276486 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6862 S 9 0 1 "" NA12156 nsv525299 2 101247642 101260169 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701405 S 2026 0 1 "" nsv524940 2 101548256 101711022 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700954 S 2026 0 1 "" nsv524547 2 101693126 101711022 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700498 S 2026 0 1 "" nsv524825 2 101725596 101725775 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700821 S 2026 0 1 "" nsv213949 2 101779571 101782192 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232527 M 24 "" nsv834318 2 101783635 101975172 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442128 S 95 0 1 "" nsv441771 2 101855477 101858850 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv213987 2 101860656 101860787 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232565 M 24 "" nsv2851 2 101864046 101888131 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10229 S 9 1 0 "" NA18956 nsv507024 2 102007909 102013909 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620721 S 4 1 0 "" NA15510 nsv458718 2 102136283 102149245 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535629 S 1557 0 1 "" NINDS_196 nsv2852 2 102137174 102175094 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5810 S 9 0 1 "" NA19129 nsv518990 2 102149828 102169549 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696457 S 2026 1 0 "" nsv2853 2 102355402 102382182 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1523 S 9 1 0 "" NA19240 nsv2856 2 102440463 102476784 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7531 S 9 0 1 "" NA12156 nsv523406 2 102561807 102575801 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699157 S 2026 0 1 "" nsv214011 2 102781002 102781336 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232589 M 24 "" nsv834319 2 102872899 103033663 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442131,nssv1442130 M 95 2 0 "" nsv2857 2 102933160 102978188 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7532 S 9 0 1 "" NA12156 nsv528569 2 103115245 103214934 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705188 S 2026 0 1 "" nsv834320 2 103128889 103345681 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442132 S 95 1 0 "" nsv2858 2 103322347 103368026 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6863 S 9 0 1 "" NA12156 esv32552 2 103694383 103695196 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98844 S 51 0 1 "" 21606 nsv2859 2 103731308 103810567 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7533,nssv4653 M 9 0 2 "" NA12156,NA19129 nsv508101 2 103775492 103781492 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624277,nssv618545,nssv622351,nssv621529 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv528160 2 103854744 103880090 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704709 S 2026 0 1 "" nsv522032 2 103874500 103880090 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694801 S 2026 0 1 "" nsv215045 2 103941308 103947420 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233623 M 24 "" dgv1231e1 2 104052123 104218620 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv73,essv1925 M 271 0 0 "" NA18959 nsv2860 2 104154109 104187874 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7534 S 9 1 0 "" NA12156 dgv223n21 2 104216261 104224869 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv519678,nsv526349 M 2026 0 2 "" nsv524027 2 104421813 104429342 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699890 S 2026 0 1 "" nsv2861 2 104848440 104881435 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1524 S 9 1 0 "" NA19240 nsv508853 2 104866093 104908067 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619912,nssv618007,nssv621171 M 4 3 0 "" CHM,NA10860,NA15510 nsv525049 2 104893887 104895398 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701094 S 2026 0 1 "" nsv521342 2 104910844 104913108 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697951 S 2026 0 1 "" nsv2862 2 105020520 105055464 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1525 S 9 1 0 "" NA19240 nsv511074 2 105072932 105102684 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622439 S 4 0 0 "" NA10860 nsv507025 2 105089306 105095306 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620722 S 4 1 0 "" NA15510 nsv516491 2 105668868 105669106 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv657614,nssv668674 M 2026 0 2 "" nsv523730 2 105719822 105721237 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699546 S 2026 0 1 "" nsv2863 2 105725590 105758385 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1526 S 9 1 0 "" NA19240 nsv834321 2 105738211 105916027 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442133,nssv1442134 M 95 0 2 "" nsv2864 2 105787973 105803566 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7535 S 9 0 1 "" NA12156 nsv10107 2 105805693 105812077 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28233 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA07048 nsv441772 2 105806630 105809727 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv10108 2 105846601 105850480 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27919 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA11830 nsv213311 2 106153597 106154413 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv231889 M 24 "" nsv524810 2 106184446 106188510 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700803 S 2026 0 1 "" nsv834322 2 106283628 106486820 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442135 S 95 1 0 "" nsv508156 2 106299382 106378474 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620187 S 4 0 1 "" NA15510 nsv223 2 106309709 106356425 CNV Loss Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv223 S 1 0 1 "" NA15510 nsv2865 2 106329686 106364348 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1528,nssv2285 M 9 0 2 "" NA18555,NA19240 nsv10109 2 106337244 106345078 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv29240,nssv28512,nssv27736,nssv26555,nssv26399,nssv28657,nssv26175,nssv28627,nssv28106,nssv28302,nssv28756,nssv27142,nssv28573,nssv27819,nssv28292,nssv28530,nssv27723,nssv28096 M 31 0 18 Samples from several populations that are part of the HapMap project. "" NA07029,NA10839,NA10847,NA10863,NA12155,NA12802,NA12872,NA18502,NA18504,NA18552,NA18564,NA18572,NA18942,NA18972,NA19007,NA19132,NA19144,NA19240 nsv442812 2 106339231 106343875 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv2867 2 106398565 106400995 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3025 S 9 1 0 "" NA18555 nsv213434 2 106399691 106402794 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232012 M 24 "" nsv2868 2 106612485 106627698 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4444 S 9 1 0 "" NA12878 nsv522223 2 106613194 106632951 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695000 S 2026 0 1 "" nsv471617 2 106654580 107549679 CNV Gain Sharp et al 2005 15918152 BAC_aCGH,FISH Eichler Segmental Duplication BAC array nssv549877,nssv550112,nssv549472,nssv549876 M 48 2 0 "" NA17017,NA17052 nsv521705 2 106719818 106768834 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698328 S 2026 0 1 "" nsv2869 2 107032020 107076733 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7536 S 9 0 1 "" NA12156 dgv1232e1 2 107056558 107220149 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv5419,esv395 M 271 0 0 "" NA18563 nsv2870 2 107216252 107260923 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7537 S 9 0 1 "" NA12156 nsv528330 2 107248604 107252764 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704912 S 2026 1 0 "" nsv507026 2 107346280 107352280 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623344 S 4 1 0 "" NA18994 nsv213203 2 107384915 107385255 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv231781 M 24 "" nsv10110 2 107474333 107477898 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27836,nssv28342,nssv28347,nssv28146,nssv28582,nssv28019 M 31 0 6 Samples from several populations that are part of the HapMap project. "" NA18502,NA18504,NA18552,NA18563,NA18572,NA18975 nsv213342 2 107613394 107614521 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv231920 M 24 "" dgv61n68 2 107770226 107995629 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH nsv834325,nsv834323 M 95 2 0 "" dgv1233e1 2 107908395 108437172 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv15004,essv16770 M 271 0 0 "" NA18870,NA18872 dgv1234e1 2 107908395 108681855 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv771,essv14810,essv13411 M 271 0 0 "" NA18870,NA18872 nsv527686 2 107999505 108566978 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704162 S 2026 1 0 "" dgv153e55 2 107999505 108652584 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv34518,esv34618 M 771 2 0 "" NA18870,NA18872 nsv527491 2 107999505 108725392 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703939 S 2026 0 1 "" nsv438364 2 108002600 108015036 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv471084 S 269 0 1 Samples from several populations that are part of the HapMap project. "" NA18872 nsv469771 2 108032981 108186821 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649792 M 265 0 2 Samples from several populations that are part of the HapMap project. "" nsv438365 2 108046228 108065618 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv471085 S 269 0 1 Samples from several populations that are part of the HapMap project. "" NA18872 nsv834326 2 108068239 108208286 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442138 S 95 1 0 "" esv33704 2 108239189 108245113 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98859 S 51 0 1 "" 21606 nsv215287 2 108256188 108256188 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233865 M 24 "" nsv834327 2 108288922 108497848 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442139 S 95 1 0 "" nsv10111 2 108312551 108315071 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28004,nssv28396,nssv27272,nssv28104,nssv28667,nssv11483,nssv28613,nssv28352,nssv28156,nssv28283,nssv26714,nssv29171,nssv26863,nssv26396,nssv28002,nssv28600,nssv28590,nssv28697 M 31 17 1 Samples from several populations that are part of the HapMap project. "" NA07048,NA10839,NA10847,NA11830,NA12155,NA12740,NA12872,NA18517,NA18563,NA18564,NA18853,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19240 nsv10112 2 108372980 108376065 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28737 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA12155 nsv469774 2 108391709 108536212 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649795 M 265 0 0 Samples from several populations that are part of the HapMap project. "" nsv528319 2 108398588 108398854 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704900 S 2026 0 1 "" nsv213897 2 108408311 108409094 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232475 M 24 "" nsv2871 2 108495111 108526552 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7538 S 9 0 1 "" NA12156 nsv834328 2 108497849 108688840 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442141 S 95 1 0 "" nsv10113 2 108576377 108584973 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26569 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18980 nsv521122 2 108652025 108659174 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv688603,nssv682601 M 2026 0 2 "" nsv2872 2 108878885 108913372 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4445 S 9 1 0 "" NA12878 nsv508854 2 108978101 109039069 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619913 S 4 1 0 "" NA10860 nsv516437 2 109038256 109047603 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv676446,nssv685943,nssv655169,nssv668353,nssv680648,nssv700681,nssv677557,nssv679827,nssv693994 M 2026 0 9 "" nsv508855 2 109299877 109368014 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621172 S 4 1 0 "" NA15510 nsv520698 2 109399762 109415554 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697564 S 2026 0 1 "" nsv508856 2 109402505 109484913 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621173 S 4 1 0 "" NA15510 nsv2873 2 109508488 109543273 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1529 S 9 1 0 "" NA19240 nsv2874 2 109646748 109690996 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2286 S 9 0 1 "" NA18555 nsv510884 2 109661382 110807971 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624375,nssv618631 M 4 0 0 "" CHM,NA18994 nsv508857 2 109744207 109871012 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621174 S 4 1 0 "" NA15510 esv2751812 2 109814589 110337721 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6983588,essv6983587 M 771 0 1 "" BEC_670 nsv469649 2 110020460 110197611 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649577 M 265 0 0 Samples from several populations that are part of the HapMap project. "" nsv508157 2 110033651 110098596 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619036,nssv620188 M 4 0 2 "" NA10860,NA15510 nsv10114 2 110043995 110090624 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28154,nssv28436,nssv28196,nssv28401,nssv28204,nssv28775 M 31 3 2 Samples from several populations that are part of the HapMap project. "" NA12155,NA18552,NA18563,NA18942,NA18975 dgv1235e1 2 110050731 110558272 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2249,esv819,essv7808 M 271 0 0 "" NA18558,NA18966 nsv7324 2 110060653 110203567 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2287 S 9 0 0 "" NA18555 nsv834329 2 110090984 110249559 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442142,nssv1442143 M 95 2 0 "" nsv10115 2 110103316 110115220 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28640 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19240 nsv10116 2 110155632 110166089 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28391,nssv27832 M 31 1 1 Samples from several populations that are part of the HapMap project. "" NA18502,NA18537 nsv10118 2 110167550 110168484 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27027 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18853 nsv441773 2 110173965 110519495 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv458751 2 110187030 110292098 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535654 S 1557 0 1 "" NINDS_238 dgv471n27 2 110187030 110339905 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv458762,nsv458785 M 1557 2 0 "" HGDP00587,HGDP01336 dgv472n27 2 110187030 110339905 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv458829,nsv458796,nsv458774 M 1557 0 3 "" 1782681092_A,HGDP01013,HGDP01191 nsv515996 2 110187030 110339905 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv657774,nssv666615,nssv652386,nssv690777,nssv657202,nssv676989,nssv682555,nssv653095,nssv698586,nssv683838,nssv652365,nssv684422,nssv664504,nssv688084,nssv682264,nssv663600,nssv673564,nssv674877,nssv689579,nssv685248,nssv688659 M 2026 11 10 "" nsv818076 2 110187030 110339905 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417204 S 112 0 1 "" NA18558 dgv154e55 2 110191936 110338000 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv34708,esv2751814 M 771 0 2 "" BEC_636,NA18558 dgv155e55 2 110191936 110338000 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv34912,esv2751815 M 771 2 0 "" BEC_730,NA18966 esv2751813 2 110191936 111163677 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6989367,essv6983451,essv6983452,essv6989794 M 771 0 1 "" BEC_656 essv3631 2 110192354 110313018 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18966 nsv508859 2 110193186 110193186 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619914 S 4 1 0 "" NA10860 dgv473n27 2 110214618 110339905 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv458951,nsv458918,nsv458873,nsv458818,nsv458851,nsv458862,nsv458885,nsv458907,nsv458807,nsv458840,nsv458929,nsv458962,nsv458940,nsv458896 M 1557 14 0 "" 1780862390_A,1782681316_A,HGDP00234,HGDP00556,HGDP00594,HGDP00665,HGDP00757,HGDP01027,HGDP01261,HGDP01271,HGDP01308,NINDS_236,NINDS_271,NINDS_37 nsv2875 2 110225049 110269831 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7539 S 9 0 1 "" NA12156 nsv458973 2 110246483 110276696 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535822 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00116 nsv458984 2 110258270 110332070 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535832 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00029 nsv508158 2 110289397 110500457 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619037 S 4 0 1 "" NA10860 nsv7325 2 110313926 110625431 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9576,nssv5811,nssv11019,nssv4446 M 9 0 0 "" NA12878,NA15510,NA18507,NA19129 nsv10119 2 110341047 110505337 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28254,nssv28476 M 31 1 1 Samples from several populations that are part of the HapMap project. "" NA18563,NA18975 nsv10120 2 110510092 110511026 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27157 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18853 nsv10121 2 110512801 110523271 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27927,nssv28431 M 31 1 1 Samples from several populations that are part of the HapMap project. "" NA18502,NA18537 nsv10122 2 110563321 110575339 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28680 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19240 nsv10123 2 110589893 110634663 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28805,nssv28718,nssv28441,nssv28304,nssv28516,nssv28794 M 31 3 3 Samples from several populations that are part of the HapMap project. "" NA12155,NA18563,NA18942,NA18975,NA19132,NA19173 nsv508159 2 110732480 110788016 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619038 S 4 0 1 "" NA10860 nsv508161 2 110791032 111072287 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619039 S 4 0 1 "" NA10860 nsv521956 2 111108488 112815043 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694725 S 2026 0 1 "" nsv834330 2 111309521 111505678 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442144 S 95 1 0 "" nsv834331 2 111528370 111720909 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442145 S 95 0 1 "" dgv1236e1 2 111616014 112463168 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv20781,essv23511,essv3535,esv3,essv20040,essv16818,essv21801,essv22454,essv24859,essv22194 M 271 0 0 "" NA07000,NA07034,NA07048,NA12044,NA12146,NA12239,NA12761,NA18872,NA18965 nsv520700 2 111647652 111665040 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697565 S 2026 0 1 "" nsv10124 2 111696413 111700028 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28720,nssv28010,nssv28333,nssv27287,nssv28089,nssv27823,nssv27914,nssv28707,nssv26572,nssv26728 M 31 8 2 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10863,NA12740,NA18537,NA18564,NA18853,NA18980,NA19144,NA19240 nsv821628 2 111709788 111964639 CNV Gain Sebat_et_al_2004 15273396 ROMA Custom Nimblegen photoprint 85000 probe ROMA oligo array nssv1421349,nssv1421348 M 31 2 0 "" nsv469744 2 111715091 111889865 CNV Gain Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649765 M 265 2 0 Samples from several populations that are part of the HapMap project. "" nsv10125 2 111725931 111749678 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28382 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA07048 nsv10126 2 111753027 112090993 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28246,nssv28422,nssv28653,nssv28354,nssv28087 M 31 2 3 Samples from several populations that are part of the HapMap project. "" NA07048,NA10839,NA11830,NA18552,NA18975 nsv2876 2 111773190 111805900 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4448 S 9 1 0 "" NA12878 nsv438367 2 111776061 111777279 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv471086,nssv471087 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA07345,NA07348 nsv818077 2 111776061 111872474 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418350 S 112 1 0 "" NA12239 nsv522475 2 111776061 111956867 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705840 S 2026 1 0 "" nsv441774 2 111785010 111912464 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" esv32858 2 111891317 111922310 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101599,essv97606,essv94309,essv96971,essv98960,essv92899,essv98616,essv93376,essv98003,essv100299,essv99528 M 51 0 11 "" 21603,21616,21808,21817,21938,21939,22085,22170,22259,22300,22335 dgv1237e1 2 111913929 112282471 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv17426,essv4501,essv18434,essv15003 M 271 0 0 "" NA11831,NA12043,NA18552,NA18870 nsv834332 2 111913934 112119591 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442150,nssv1442148,nssv1442147,nssv1442146,nssv1442149 M 95 4 1 "" nsv2878 2 111955557 111987592 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10230 S 9 1 0 "" NA18956 nsv507027 2 112022901 112028901 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617567,nssv620724,nssv623345,nssv622000 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 dgv1238e1 2 112115384 112282471 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv14542,essv12679,essv15249,essv5358,essv9020,essv16895,essv15044,essv11529,essv9347,essv13854,essv15690,essv9688,essv10937 M 271 0 0 "" NA18500,NA18563,NA18853,NA18854,NA18912,NA18913,NA19094,NA19129,NA19132,NA19173,NA19202,NA19205,NA19209 nsv10127 2 112193410 112321026 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28296,nssv28462,nssv27931,nssv28693 M 31 4 0 Samples from several populations that are part of the HapMap project. "" NA07048,NA10839,NA18552,NA18572 nsv834333 2 112206442 112374578 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442153,nssv1442152 M 95 2 0 "" nsv215236 2 112238625 112238720 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233814 M 24 "" nsv215083 2 112254745 112254819 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233661 M 24 "" nsv525951 2 112367547 112369123 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702158 S 2026 0 1 "" nsv526647 2 112367547 112454793 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702973 S 2026 0 1 "" nsv515698 2 112415581 112512139 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv693497,nssv664457,nssv690449 M 2026 0 3 "" nsv213801 2 112432790 112434960 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232379 M 24 "" nsv458997 2 113030025 113147323 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535845 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00948 nsv526301 2 113167729 113212016 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702582 S 2026 0 1 "" nsv441775 2 113178630 113195118 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv1239e1 2 113185466 113195120 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1351,essv998 M 271 0 0 "" NA18964 nsv525790 2 113195845 113197778 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701970 S 2026 0 1 "" nsv2879 2 113356723 113390073 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7540 S 9 1 0 "" NA12156 esv2750599 2 113409631 113410666 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93342 S 51 0 1 "" 22170 nsv2880 2 113433033 113453152 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7541 S 9 0 1 "" NA12156 nsv2881 2 113517036 113562828 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6864 S 9 0 1 "" NA12156 nsv508102 2 113589440 113595440 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618546,nssv622352 M 4 0 2 "" CHM,NA10860 nsv459008 2 113689176 113727021 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535853 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00772 nsv508162 2 113699274 113816196 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622815 S 4 0 1 "" NA18994 dgv1240e1 2 113791179 113971846 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv5327,essv20021 M 271 0 0 "" NA07048,NA18563 esv380 2 113791179 114144908 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 "" nsv10129 2 113797105 113799038 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11610 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19221 nsv10130 2 113887658 113970689 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11513,nssv28586 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA18563,NA18972 nsv834334 2 113891970 114055057 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442154 S 95 1 0 "" essv901 2 113968175 114144908 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19000 nsv10131 2 114005050 114008964 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28626 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18563 nsv10132 2 114027870 114029404 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26381,nssv11640,nssv28835 M 31 3 0 Samples from several populations that are part of the HapMap project. "" NA12155,NA12802,NA19221 esv33899 2 114032171 114036925 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv92908 S 51 0 1 "" 21939 nsv10133 2 114046071 114080823 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26554,nssv28630,nssv28622,nssv11670,nssv11543 M 31 5 0 Samples from several populations that are part of the HapMap project. "" NA12802,NA18504,NA18860,NA18972,NA19221 nsv508163 2 114080839 114147234 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620189 S 4 0 1 "" NA15510 nsv2882 2 114168944 114202914 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7542 S 9 1 0 "" NA12156 nsv2883 2 114224119 114251429 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1530 S 9 0 1 "" NA19240 nsv508860 2 114415131 114430155 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618008,nssv623872 M 4 2 0 "" CHM,NA18994 nsv214938 2 114584292 114584345 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233516 M 24 "" nsv2884 2 114791821 114836657 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7543 S 9 0 1 "" NA12156 nsv526658 2 114804817 114849144 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702986 S 2026 0 1 "" nsv834337 2 114886044 115058103 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442155 S 95 1 0 "" nsv834338 2 115036415 115197459 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442156 S 95 0 1 "" nsv437290 2 115104516 115121922 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467171 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18521 nsv10134 2 115107995 115119441 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28662,nssv26731,nssv27407,nssv28471 M 31 0 4 Samples from several populations that are part of the HapMap project. "" NA18502,NA18504,NA18853,NA19144 nsv516975 2 115108706 115110757 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv661679,nssv692545,nssv678774,nssv663076,nssv693904,nssv677426,nssv692030,nssv676055,nssv671545,nssv692493,nssv680085,nssv653781,nssv669967,nssv653539,nssv692171 M 2026 0 15 "" nsv442828 2 115112651 115117229 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv459019 2 115211372 115315243 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535864 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00786 nsv437513 2 115236435 115259248 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467394 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA07048 nsv523446 2 115249116 115253021 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699202 S 2026 0 1 "" nsv515750 2 115251371 115253021 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv681717,nssv681442,nssv663556,nssv689200,nssv686900,nssv683283,nssv685666,nssv668175,nssv666018,nssv664672,nssv690980,nssv687909,nssv670004,nssv660180 M 2026 0 14 "" nsv526597 2 115251371 115259248 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702916 S 2026 0 1 "" nsv441776 2 115252546 115258300 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv522770 2 115303169 115304296 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698411 S 2026 0 1 "" nsv2885 2 115363614 115409240 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6865 S 9 0 1 "" NA12156 dgv474n27 2 115516839 115550883 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv459030,nsv459041 M 1557 0 2 "" 1780862001_A,1780862459_A nsv520403 2 115589026 115590772 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697395 S 2026 0 1 "" nsv834339 2 115669528 115849209 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442158,nssv1442157 M 95 2 0 "" nsv526317 2 115678032 115680236 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702603 S 2026 1 0 "" nsv522754 2 115699649 115719408 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698391 S 2026 1 0 "" nsv520606 2 116193470 116204750 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697515 S 2026 1 0 "" essv5982 2 116213758 116391580 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18552 esv35070 2 116213758 116452938 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6990363,essv6986862,essv6979423 M 771 1 0 "" NA18552 dgv1241e1 2 116213758 116516523 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv4447,esv666 M 271 0 0 "" NA18552 nsv10135 2 116248373 116391017 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28824,nssv28346 M 31 1 1 Samples from several populations that are part of the HapMap project. "" NA18552,NA19132 nsv459052 2 116252113 116390291 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535893 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01103 nsv437292 2 116372025 116379512 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467173 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19145 dgv61n17 2 116377946 116379512 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437293,nsv437535,nsv437294,nsv437524 M 60 0 4 "" NA10838,NA12878,NA19132,NA19194 nsv2886 2 116396684 116429364 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1531,nssv5812,nssv9861,nssv10231,nssv2288,nssv4449 M 9 6 0 "" NA12878,NA18507,NA18555,NA18956,NA19129,NA19240 nsv508861 2 116406037 116449584 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623873,nssv619915,nssv621175 M 4 3 0 "" NA10860,NA15510,NA18994 nsv834340 2 116589187 116791126 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442159 S 95 1 0 "" nsv527931 2 116787443 116796999 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704439 S 2026 0 1 "" nsv834341 2 116844529 117016510 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442160 S 95 1 0 "" nsv524892 2 116967980 116973231 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700898 S 2026 0 1 "" nsv523107 2 116971077 116993677 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698804 S 2026 0 1 "" nsv2887 2 117181900 117198939 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1532 S 9 1 0 "" NA19240 dgv1242e1 2 117201020 117467663 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv18325,essv18060,essv20870,essv24646,esv535 M 271 0 0 "" NA10846,NA12145 dgv156e55 2 117201259 117460821 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv34564,esv34519 M 771 0 2 "" NA10846,NA12145 nsv834342 2 117259472 117433590 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442161 S 95 1 0 "" nsv10136 2 117411301 117415120 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv29201 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18517 nsv10137 2 117444220 117453039 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26871 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19144 nsv441777 2 117445538 117452435 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv441778 2 117488968 117507983 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv157e55 2 117490075 117653459 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv2751817,esv2751816 M 771 2 0 "" BEC_695,BEC_768 dgv224n21 2 117537174 117627587 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv520262,nsv522143,nsv520236 M 2026 3 0 "" nsv459063 2 117537174 117627587 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535904 S 1557 1 0 "" 1780854537_A nsv526504 2 117566776 117584087 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702814 S 2026 0 1 "" dgv158e55 2 117662712 117848562 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv2751818,esv2751820 M 771 0 2 "" BEC_431,BEC_515 dgv159e55 2 117663229 118161566 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv2751822,esv2751821,esv2751819 M 771 0 3 "" BEC_319,BEC_361,SPC_171 dgv225n21 2 117689384 117826925 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv528043,nsv521712 M 2026 0 2 "" dgv160e55 2 117939994 118150834 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv2751823,esv2751824 M 771 0 2 "" BEC_431,BEC_515 nsv459085 2 117954791 118032539 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535919 S 1557 0 1 "" 1780862598_A dgv226n21 2 117975027 118114732 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv521715,nsv528044 M 2026 0 2 "" dgv227n21 2 118071551 118080952 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv519214,nsv520801 M 2026 2 0 "" nsv508103 2 118116613 118122613 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622353,nssv618547,nssv621530,nssv624278 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv214971 2 118117348 118117398 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233549 M 24 "" nsv2889 2 118285741 118314082 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6866 S 9 1 0 "" NA12156 nsv515493 2 118444565 118458384 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv655712,nssv653306,nssv670536,nssv653429 M 2026 0 4 "" nsv215383 2 118506882 118506935 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233961 M 24 "" nsv834343 2 118589641 118758564 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442163 S 95 1 0 "" nsv214397 2 118610333 118610333 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232975 M 24 "" nsv214305 2 118622375 118622526 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232883 M 24 "" nsv527847 2 118681090 118695120 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704345 S 2026 0 1 "" nsv834344 2 118735219 118895536 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442165,nssv1442164 M 95 2 0 "" nsv2890 2 118758712 118803810 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7544 S 9 0 1 "" NA12156 nsv433210 2 118776820 118778623 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463091 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA19129 nsv527609 2 118802138 118821207 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704072 S 2026 0 1 "" nsv522937 2 118940798 118949902 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698600 S 2026 0 1 "" nsv526859 2 119023889 119031988 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703217 S 2026 0 1 "" nsv2891 2 119266458 119305921 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7545 S 9 0 1 "" NA12156 nsv2892 2 119351207 119403036 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2289,nssv10232,nssv1533 M 9 0 3 "" NA18555,NA18956,NA19240 nsv459119 2 119426630 119988013 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535943 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00158 nsv522323 2 119441381 119449178 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695104 S 2026 0 1 "" nsv528763 2 119447418 119448272 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705425 S 2026 0 1 "" nsv527208 2 119447418 119454047 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703608 S 2026 0 1 "" nsv519595 2 119686061 119717732 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv657003,nssv676863,nssv671397,nssv682881,nssv698311,nssv688553,nssv657719 M 2026 0 7 "" nsv441779 2 119761764 119766072 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv508862 2 119818266 119869804 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618009 S 4 1 0 "" CHM nsv213915 2 120134726 120134726 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232493 M 24 "" nsv834345 2 120428498 120612181 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442166 S 95 1 0 "" nsv2893 2 120437708 120470637 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4450 S 9 1 0 "" NA12878 nsv834346 2 120606592 120778328 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442171,nssv1442186,nssv1442167,nssv1442170,nssv1442169,nssv1442168,nssv1442183,nssv1442176,nssv1442172,nssv1442187,nssv1442174,nssv1442175,nssv1442180,nssv1442182,nssv1442179,nssv1442178,nssv1442177,nssv1442181 M 95 18 0 "" nsv524770 2 120610922 120619397 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700761 S 2026 0 1 "" nsv508164 2 120669850 120770030 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622816 S 4 0 1 "" NA18994 nsv2894 2 120767953 120813218 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5813 S 9 0 1 "" NA19129 nsv528399 2 120787041 120797699 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704989 S 2026 1 0 "" nsv2895 2 120850984 120883639 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5814 S 9 1 0 "" NA19129 nsv507028 2 120881950 120887950 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620725 S 4 1 0 "" NA15510 nsv2896 2 120890619 120914979 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4451 S 9 1 0 "" NA12878 nsv516891 2 120937303 120944407 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv656513,nssv654728,nssv680202 M 2026 0 3 "" nsv526169 2 120987879 120996833 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702430 S 2026 0 1 "" nsv523024 2 121019470 121020013 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698703 S 2026 1 0 "" nsv515554 2 121020013 121022912 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv691109,nssv660373,nssv660736,nssv690043,nssv655937,nssv665903,nssv671642,nssv682403,nssv679281,nssv654956,nssv691381,nssv665997,nssv660688,nssv679800,nssv655551,nssv673872,nssv663891,nssv659159,nssv664254 M 2026 0 19 "" nsv834348 2 121105816 121301928 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442188 S 95 1 0 "" nsv459141 2 121161450 121192066 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535961 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01067 nsv213361 2 121162084 121167467 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv231939 M 24 "" nsv215337 2 121197479 121197479 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233915 M 24 "" nsv834349 2 121239760 121441721 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442189,nssv1442190 M 95 0 2 "" nsv2897 2 121317913 121367589 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2290,nssv4452 M 9 2 0 "" NA12878,NA18555 nsv834350 2 121436777 121633688 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442192,nssv1442191 M 95 0 2 "" nsv459152 2 121533082 121573138 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535972 S 1557 0 1 "" NINDS_259 nsv525727 2 121724088 121733176 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701891 S 2026 1 0 "" nsv2898 2 121945038 121970483 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7546 S 9 0 1 "" NA12156 dgv1243e1 2 122037995 122198553 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv3474,esv351 M 271 0 0 "" NA18992 nsv459163 2 122047705 122832236 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535983 S 1557 1 0 "" 1780862075_A nsv834351 2 122134154 122365503 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442194,nssv1442193 M 95 0 2 "" nsv834352 2 122603793 122805971 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442195 S 95 0 1 "" nsv507029 2 123159797 123165797 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623347,nssv622001,nssv620726,nssv617568 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv10138 2 123163920 123200129 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28733,nssv28095,nssv28395,nssv27392,nssv27519,nssv28747,nssv28137,nssv11573,nssv26713,nssv26854 M 31 0 10 Samples from several populations that are part of the HapMap project. "" NA10839,NA10847,NA11830,NA12802,NA12872,NA18537,NA18552,NA18564,NA18853,NA18972 nsv508165 2 123183955 123198986 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619040 S 4 0 1 "" NA10860 nsv442829 2 123192648 123198471 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv438368 2 123197054 123198531 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv471095,nssv471098,nssv471093,nssv471094,nssv471088,nssv471096,nssv471092,nssv471089,nssv471099,nssv471097 M 269 0 10 Samples from several populations that are part of the HapMap project. "" NA18537,NA18540,NA18545,NA18558,NA18577,NA18594,NA18633,NA18635,NA18971,NA19000 nsv527471 2 123197054 123206455 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703914 S 2026 0 1 "" nsv517668 2 123396487 123479542 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv655305,nssv652770,nssv669453 M 2026 0 3 "" nsv524501 2 123556989 123565712 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700443 S 2026 0 1 "" nsv525131 2 123652447 123675119 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701199 S 2026 1 0 "" nsv524990 2 123670748 123681112 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701019 S 2026 1 0 "" nsv215328 2 123771159 123771159 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233906 M 24 "" nsv834353 2 123773533 123951396 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442197 S 95 0 1 "" nsv214668 2 123790507 123790566 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233246 M 24 "" nsv213476 2 123875984 123876055 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232054 M 24 "" nsv508104 2 123948693 123954693 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618548,nssv621531,nssv622354,nssv624279 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv2900 2 123968628 124002799 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7547 S 9 1 0 "" NA12156 nsv459196 2 124001342 124037216 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536014 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00738 nsv2901 2 124011266 124042846 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10234 S 9 1 0 "" NA18956 nsv521983 2 124046550 124052642 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694751 S 2026 0 1 "" nsv834354 2 124104287 124149018 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442198 S 95 0 1 "" nsv518827 2 124413230 124432657 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696280 S 2026 0 1 "" nsv523624 2 124816154 124829205 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699421 S 2026 0 1 "" nsv523244 2 124844026 124847640 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698973 S 2026 1 0 "" dgv62n68 2 124844815 125031648 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH nsv834355,nsv834356 M 95 2 0 "" nsv2902 2 124851467 124881241 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3026 S 9 1 0 "" NA18555 nsv518449 2 124851819 124858952 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695887 S 2026 0 1 "" nsv214662 2 124905340 124905340 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233240 M 24 "" nsv834357 2 124974387 125137737 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442201 S 95 1 0 "" nsv520468 2 125007069 125007264 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697439 S 2026 0 1 "" nsv528674 2 125062567 125099752 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705313 S 2026 0 1 "" nsv834359 2 125084102 125252252 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442202 S 95 1 0 "" nsv214838 2 125144459 125144518 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233416 M 24 "" nsv834360 2 125208915 125399430 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442203 S 95 1 0 "" nsv834361 2 125317311 125527222 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442204 S 95 1 0 "" nsv441780 2 125368162 125374588 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv834362 2 125450151 125623681 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442205 S 95 1 0 "" nsv213657 2 125580278 125580343 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232235 M 24 "" nsv2903 2 125607697 125652497 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7548 S 9 0 1 "" NA12156 esv2751825 2 125909427 126158244 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6986301,essv6986302,essv6982892,essv6982891,essv6982890 M 771 1 0 "" BEC_608 nsv214381 2 125953255 125953317 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232959 M 24 "" nsv523564 2 125955281 125966813 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699345 S 2026 0 1 "" nsv433221 2 125966813 125976972 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463102 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA12156 nsv526487 2 126084629 126086465 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702796 S 2026 0 1 "" nsv2904 2 126144337 126183567 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1534,nssv6867,nssv9862,nssv9351,nssv10235,nssv11020,nssv5815 M 9 0 7 "" NA12156,NA15510,NA18507,NA18517,NA18956,NA19129,NA19240 nsv224 2 126155894 126177987 CNV Loss Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv224 S 1 0 1 "" NA15510 nsv10140 2 126156836 126168651 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28206,nssv29231,nssv28511,nssv28854,nssv28502,nssv27018,nssv28187,nssv27035,nssv28785,nssv28758,nssv28139,nssv28702,nssv26868,nssv28014,nssv11700,nssv28670,nssv28403,nssv28481,nssv28145,nssv28666,nssv26853,nssv28865,nssv28435,nssv27997,nssv28771,nssv28760,nssv27918,nssv11603 M 31 0 28 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10863,NA11830,NA12155,NA12740,NA12802,NA12872,NA18502,NA18504,NA18517,NA18537,NA18552,NA18563,NA18564,NA18572,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19144,NA19173,NA19221,NA19240 nsv213347 2 126159478 126168061 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv231925 M 24 "" nsv508166 2 126165171 126173956 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617462,nssv620190,nssv622817,nssv619041 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv507030 2 126351125 126357125 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623348,nssv622002,nssv620728,nssv617569 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv834363 2 126412675 126604089 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442206,nssv1442208 M 95 2 0 "" nsv2905 2 126436575 126469339 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4453 S 9 1 0 "" NA12878 nsv508167 2 126484000 126490467 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619042 S 4 0 1 "" NA10860 nsv507031 2 126682618 126688618 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622003 S 4 1 0 "" NA10860 dgv1244e1 2 126749247 126877324 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2979,essv14516,essv9176,essv17594,essv16721,essv4706,essv15850,esv425,essv23343,essv10636,essv16260 M 271 0 0 "" NA12750,NA12762,NA18622,NA18855,NA18981,NA19128,NA19142,NA19161,NA19202,NA19223 nsv215503 2 126750559 126750559 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv234081 M 24 "" nsv2906 2 126783189 126804937 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9352,nssv6868 M 9 2 0 "" NA12156,NA18517 nsv508863 2 126784624 126793354 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619916 S 4 1 0 "" NA10860 nsv834364 2 126816982 126983300 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442210,nssv1442209 M 95 1 1 "" nsv10141 2 126838868 126840700 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28815 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18564 dgv63n68 2 127333226 127510093 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH nsv834366,nsv834365 M 95 0 2 "" nsv2907 2 127385762 127425551 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2291 S 9 0 1 "" NA18555 nsv2908 2 127395147 127427223 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2292 S 9 1 0 "" NA18555 nsv528979 2 127431110 127440840 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705678 S 2026 0 1 "" nsv2909 2 127437110 127442290 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7549 S 9 1 0 "" NA12156 nsv516759 2 127512896 127575671 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv674777,nssv698704,nssv670652,nssv685642,nssv654919,nssv685205,nssv690241,nssv691455 M 2026 0 8 "" nsv2911 2 127531868 127565498 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1535 S 9 1 0 "" NA19240 dgv1245e1 2 127547173 127722744 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv153,essv14488,essv9742,essv16027 M 271 0 0 "" NA18501,NA18913,NA19202 nsv10142 2 127571994 127575507 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28895 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA12155 nsv519035 2 127911474 127926630 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696503 S 2026 0 1 "" nsv524607 2 127912654 127934594 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700568 S 2026 1 0 "" nsv516410 2 127940105 127941458 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv693664,nssv688264,nssv668176,nssv680147,nssv684716,nssv684052,nssv689756,nssv675172,nssv674473,nssv692939,nssv659296 M 2026 0 11 "" nsv2912 2 127997382 128024060 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7550,nssv4654 M 9 0 2 "" NA12156,NA19129 nsv518085 2 128050643 128121090 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695499 S 2026 0 1 "" nsv508864 2 128059696 128158462 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619289 S 4 1 0 "" NA10860 nsv517532 2 128104167 128121090 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696373,nssv687153,nssv678435,nssv652932,nssv659427,nssv661517,nssv682230,nssv677696,nssv661841,nssv683284,nssv671056,nssv656888,nssv669115,nssv652285,nssv663443 M 2026 0 15 "" nsv834367 2 128347021 128506302 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442213 S 95 0 1 "" nsv508865 2 128362772 128445598 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619290 S 4 1 0 "" NA10860 nsv441781 2 128538102 128543166 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv7326 2 128630897 128643770 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4454 S 9 0 0 "" NA12878 nsv521058 2 128689355 128724562 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697760 S 2026 0 1 "" nsv834368 2 128690364 128895496 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442216,nssv1442215,nssv1442217,nssv1442219,nssv1442214 M 95 0 5 "" nsv516672 2 128724128 128874887 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv656142,nssv670068,nssv697414,nssv699513,nssv661842,nssv702583,nssv660249 M 2026 0 7 "" nsv459263 2 128758869 128834445 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536055 S 1557 0 1 "" 1780862444_A nsv2913 2 128832119 128857417 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5816 S 9 1 0 "" NA19129 nsv525116 2 128873869 128877433 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701181 S 2026 1 0 "" nsv524258 2 128981236 129005385 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700155 S 2026 0 1 "" nsv834370 2 129020139 129231144 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442220 S 95 0 1 "" nsv508866 2 129057381 129142304 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623874 S 4 1 0 "" NA18994 nsv2914 2 129104351 129149134 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7551 S 9 0 1 "" NA12156 nsv516422 2 129110972 129111345 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv668271,nssv683285,nssv655813 M 2026 0 3 "" nsv834371 2 129116017 129349411 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442221,nssv1442222 M 95 1 1 "" nsv818079 2 129167676 129184003 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417377 S 112 1 0 "" NA18944 nsv821629 2 129213068 130808479 CNV Loss Sebat_et_al_2004 15273396 ROMA Custom Nimblegen photoprint 85000 probe ROMA oligo array nssv1421350 S 31 0 1 "" nsv459274 2 129220765 130864338 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536060 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00780 nsv525251 2 129221739 129222027 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701346 S 2026 0 1 "" nsv10143 2 129229234 129231192 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11730,nssv28845,nssv28581,nssv27629,nssv28710,nssv28884 M 31 0 6 Samples from several populations that are part of the HapMap project. "" NA18502,NA18564,NA18853,NA18860,NA19132,NA19221 nsv213814 2 129240666 129240754 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232392 M 24 "" nsv10144 2 129260775 129263448 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28742,nssv27165 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18504,NA19144 nsv2915 2 129270983 129296472 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3027 S 9 1 0 "" NA18555 nsv508867 2 129282366 129331772 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621176 S 4 1 0 "" NA15510 nsv2916 2 129299441 129344247 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2293 S 9 0 1 "" NA18555 nsv10145 2 129314923 129321777 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28195 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18537 nsv2917 2 129346650 129365604 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10236,nssv4455 M 9 0 2 "" NA12878,NA18956 nsv10146 2 129354317 129362705 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11633,nssv28875,nssv27017,nssv27504,nssv28189,nssv28001,nssv28082,nssv28256,nssv27032,nssv28237,nssv28245 M 31 0 11 Samples from several populations that are part of the HapMap project. "" NA07029,NA10847,NA10863,NA11830,NA12740,NA12802,NA18537,NA18564,NA18972,NA18980,NA19007 nsv442831 2 129354708 129356527 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" esv33242 2 129355237 129357660 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101443,essv95623 M 51 0 2 "" 21603,21841 nsv438369 2 129357664 129358182 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv471103,nssv471106,nssv471100,nssv471101,nssv471105,nssv471104 M 269 0 6 Samples from several populations that are part of the HapMap project. "" NA18564,NA18566,NA18570,NA18579,NA18952,NA18968 nsv519413 2 129361551 129364425 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv656095,nssv690700 M 2026 0 2 "" nsv471618 2 129438180 129603013 CNV Loss Sharp et al 2005 15918152 BAC_aCGH,FISH Eichler Segmental Duplication BAC array nssv549950 S 48 0 1 "" NA17017 nsv2918 2 129477923 129491191 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7552 S 9 0 1 "" NA12156 nsv524771 2 129481741 129485419 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700762 S 2026 0 1 "" nsv517457 2 129500953 129501437 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv693600,nssv668904,nssv680408,nssv679299,nssv669214,nssv656119,nssv682640,nssv652069,nssv665394,nssv679001,nssv675059 M 2026 0 11 "" nsv518280 2 129500953 129539388 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695711 S 2026 0 1 "" dgv1246e1 2 129581854 129866275 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv7736,essv1895,essv8866,essv2978,essv18258,essv7132,essv21767,essv16103,essv3739,essv21025,essv16927,essv21728,essv15584,essv23660,essv5342,essv18644,essv7342,essv10986,essv23942,essv7607,essv16656,essv5288,essv19757,essv4358,essv11853,essv15989,essv20383,essv17636,essv6266,essv22176,esv46,essv9337,essv13867,essv11493,essv13458,essv19932,essv8353,essv4789,essv10922,essv18139,essv14974,essv22560,essv14567,essv13050,essv5507,essv20180,essv16849,essv24142,essv23591,essv15518,essv153,essv4014 M 271 0 0 "" NA06991,NA07348,NA10830,NA10835,NA10846,NA10847,NA10857,NA10863,NA11832,NA11993,NA12006,NA12234,NA12239,NA12248,NA12753,NA12813,NA12814,NA18501,NA18505,NA18508,NA18537,NA18545,NA18563,NA18570,NA18573,NA18620,NA18624,NA18632,NA18633,NA18636,NA18852,NA18853,NA18854,NA18858,NA18870,NA18961,NA18968,NA18970,NA18976,NA18981,NA19100,NA19137,NA19142,NA19143,NA19144,NA19173,NA19192,NA19202,NA19205,NA19209,NA19221 nsv10147 2 129631157 129635231 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28780 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18504 nsv2919 2 129640543 129668293 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4456 S 9 1 0 "" NA12878 nsv508868 2 129641527 129654801 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619291,nssv618010 M 4 2 0 "" CHM,NA10860 nsv518253 2 129678042 129904593 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695684 S 2026 0 1 "" nsv2920 2 129707261 129752054 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7553 S 9 0 1 "" NA12156 nsv10148 2 129747893 129754922 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27162 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18980 nsv834372 2 129852802 130005916 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442225,nssv1442223,nssv1442224 M 95 3 0 "" nsv459285 2 129881749 130136597 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536069 S 1557 1 0 "" 1780854511_A nsv10149 2 129895716 129898897 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28443 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18975 nsv10151 2 129931755 129933442 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28483 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18975 nsv2922 2 129955111 129969476 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4457 S 9 0 1 "" NA12878 nsv10152 2 129958273 129968186 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28132 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA07029 nsv441782 2 129958733 129963063 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv834373 2 129996232 130192459 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442226 S 95 0 1 "" nsv2923 2 130049502 130094509 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5817 S 9 0 1 "" NA19129 essv3693 2 130063068 130583205 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18947 dgv1247e1 2 130063068 133031735 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv15150,esv613 M 271 0 0 "" NA19129 esv2751826 2 130079961 130859366 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6982174,essv6982173,essv6982172 M 771 1 0 "" BEC_40 nsv10153 2 130096554 130097893 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28905 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18564 nsv10154 2 130118954 130120734 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11474 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18517 nsv2924 2 130264365 130291350 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1536 S 9 0 1 "" NA19240 nsv10155 2 130264902 130275051 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11504,nssv28810,nssv28798 M 31 0 3 Samples from several populations that are part of the HapMap project. "" NA18504,NA18517,NA19240 nsv442832 2 130265505 130275476 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv1248e1 2 130291879 130583205 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv9050,essv24852,essv2655,essv8848,essv18208,essv17834,essv6320,essv12408,essv20999,essv588,essv7406,essv23978,essv22168,essv8736,essv24680,essv11193,essv16554,essv15265,essv2007,essv24038,essv21684,essv1367,essv10150,essv13591,essv15524,essv20314,essv13800,essv14287,essv12499,essv4910,essv11631,essv17203,essv4357,essv22563,essv9627,essv13424,essv20943,essv17331,essv22499,essv18737,essv19918,essv8336,essv17536,essv11491,essv5271,essv24587,essv21824,essv14051,essv15323,essv9816,essv16860,essv14969,essv21378,essv20009,essv18601,essv12711,essv12970,essv20598,essv14752,essv1019,essv9255,essv1188,essv469,essv6565,essv18999,essv3753,essv1096,essv18847,essv2250,essv11738,essv22236,essv10280 M 271 0 0 "" NA06991,NA07000,NA07048,NA07056,NA07348,NA10831,NA10857,NA10859,NA11829,NA11839,NA11882,NA11992,NA12005,NA12044,NA12057,NA12234,NA12236,NA12248,NA12716,NA12740,NA12751,NA12762,NA12801,NA12813,NA12874,NA18504,NA18505,NA18506,NA18508,NA18561,NA18573,NA18609,NA18621,NA18623,NA18624,NA18856,NA18858,NA18859,NA18861,NA18862,NA18863,NA18870,NA18914,NA18949,NA18951,NA18952,NA18961,NA18964,NA18966,NA18967,NA18998,NA19005,NA19007,NA19092,NA19094,NA19127,NA19128,NA19130,NA19132,NA19141,NA19153,NA19154,NA19159,NA19171,NA19173,NA19192,NA19194,NA19205,NA19207,NA19210,NA19211,NA19238 dgv1249e1 2 130291879 130745921 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv17920,essv1529,essv18062,essv12210,essv13727,essv16695,essv23541,essv16946,essv62,essv23439 M 271 0 0 "" NA06993,NA10854,NA12003,NA12145,NA18980,NA18991,NA19101,NA19119,NA19142,NA19144 dgv1250e1 2 130291879 131391022 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv3012,essv5524,essv5707,essv15735,essv19396,essv13862 M 271 0 0 "" NA11840,NA18529,NA18550,NA18854,NA18981,NA19131 nsv10156 2 130348725 130354682 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11760 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19221 nsv834374 2 130401237 130569867 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442227 S 95 1 0 "" nsv10157 2 130405077 130484699 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27148,nssv28914,nssv28289,nssv28086,nssv27295,nssv28818,nssv28828,nssv28239,nssv28706,nssv28287,nssv27292,nssv28295,nssv27932,nssv27837,nssv27737,nssv28572,nssv27614,nssv27634,nssv28621,nssv28985,nssv28965,nssv28521,nssv28788,nssv28826,nssv28796,nssv29015,nssv27524,nssv27412,nssv28955,nssv28523,nssv11820,nssv11663,nssv28750,nssv28840 M 31 0 23 Samples from several populations that are part of the HapMap project. "" NA07048,NA10847,NA10863,NA11830,NA12155,NA12740,NA12872,NA18502,NA18504,NA18537,NA18563,NA18564,NA18853,NA18860,NA18942,NA18972,NA18975,NA18980,NA19132,NA19144,NA19173,NA19221,NA19240 dgv1251e1 2 130417788 130583205 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv10239,essv20141 M 271 0 0 "" NA07345,NA19152 nsv471419 2 130453465 130456541 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548228,nssv548226,nssv548227 M 3 "" nsv517144 2 130491160 130508443 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv653861,nssv664983,nssv659198 M 2026 0 3 "" nsv10158 2 130494246 130503047 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28848,nssv28856,nssv27415,nssv28870,nssv28339,nssv28593 M 31 0 6 Samples from several populations that are part of the HapMap project. "" NA12740,NA18504,NA18860,NA18975,NA19144,NA19173 nsv10159 2 130502508 130510671 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11850 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19221 nsv442833 2 130510113 130539465 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" essv1878 2 130512123 130745921 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18976 nsv10160 2 130525010 130547461 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11880,nssv28475,nssv11693 M 31 1 2 Samples from several populations that are part of the HapMap project. "" NA18552,NA18972,NA19221 nsv10163 2 130549037 130563114 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28974,nssv27742,nssv28878,nssv28661,nssv29045 M 31 0 5 Samples from several populations that are part of the HapMap project. "" NA12155,NA18502,NA18860,NA18980,NA19132 nsv834375 2 130580492 130767279 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442228 S 95 0 1 "" nsv10164 2 130582683 130594268 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27527,nssv27842,nssv29004,nssv28886,nssv28388,nssv29075 M 31 0 6 Samples from several populations that are part of the HapMap project. "" NA12155,NA12740,NA18980,NA19132,NA19144,NA19173 nsv7327 2 130598967 132144837 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4459,nssv4460 M 9 0 0 "" NA12878 nsv520559 2 130607137 130864338 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv687961,nssv694129,nssv675857,nssv672527 M 2026 3 1 "" nsv482053 2 130625210 130655924 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558414 S 1 1 0 "" KB1 nsv818080 2 130659743 130826327 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417185 S 112 1 0 "" NA18550 dgv475n27 2 130659743 130864338 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv459296,nsv459307,nsv459318 M 1557 3 0 "" HGDP00716,HGDP01241,HGDP01328 essv2399 2 130664117 130859366 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18976 nsv10165 2 130670912 130674521 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11534 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18517 nsv508870 2 130677551 130698451 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623875 S 4 1 0 "" NA18994 nsv10166 2 130682805 130684809 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28701 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18502 nsv10167 2 130685199 130689062 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11723,nssv28306 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA18972,NA19007 nsv10168 2 130748468 130761775 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28741,nssv28515,nssv28612,nssv11910 M 31 2 2 Samples from several populations that are part of the HapMap project. "" NA07048,NA18502,NA18552,NA19221 nsv459341 2 130755369 130864338 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536105 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00760 nsv508105 2 130778455 130784455 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624280 S 4 0 1 "" NA18994 nsv10169 2 130883955 130897878 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27937,nssv28908,nssv29034,nssv29105,nssv27637,nssv28916,nssv28900,nssv28779,nssv28428 M 31 0 9 Samples from several populations that are part of the HapMap project. "" NA12155,NA12740,NA18502,NA18504,NA18860,NA18980,NA19132,NA19144,NA19173 nsv10170 2 130916351 130983336 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11753,nssv28998,nssv11813,nssv28968,nssv29135,nssv11940,nssv28020,nssv28976 M 31 1 5 Samples from several populations that are part of the HapMap project. "" NA12155,NA18860,NA18972,NA18980,NA19173,NA19221 essv17585 2 130935780 131391022 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12762 dgv18e24 2 130986688 130987587 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH esv2750591,esv2750690 M 51 2 0 "" 22259,22335 nsv10171 2 131030629 131037719 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27722,nssv28182 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA07029,NA10847 nsv10172 2 131236965 131270301 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28105,nssv29028,nssv29165,nssv28809,nssv11843 M 31 0 5 Samples from several populations that are part of the HapMap project. "" NA12155,NA18502,NA18860,NA18972,NA18980 nsv10174 2 131288742 131301462 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28839,nssv28155,nssv29195,nssv28468,nssv29006,nssv29064 M 31 0 6 Samples from several populations that are part of the HapMap project. "" NA12155,NA12740,NA18502,NA18980,NA19132,NA19173 nsv524021 2 131316198 132144820 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699883 S 2026 0 1 "" nsv10175 2 131353875 131357620 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv29036 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19173 nsv10176 2 131415479 131417581 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11970,nssv29225 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA12155,NA19221 nsv523500 2 131426777 131445064 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699269 S 2026 0 1 "" nsv2925 2 131432412 131478523 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7554,nssv5818,nssv1537,nssv2294 M 9 0 4 "" NA12156,NA18555,NA19129,NA19240 dgv1252e1 2 131435390 132548178 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv16940,essv286,essv3052,essv57,essv22583,essv17762,essv21807,essv5541,essv4390,essv18090,essv18826,essv12173,essv23971,essv16665,essv24074,essv18613,essv20360,essv9634,essv16490,essv15353,essv15215,essv20022,essv12461,essv13829,essv9100,essv22501,essv19448,essv13004,essv9118,essv17551,essv17900,essv3705,essv5173,essv14341,essv15745,essv13649,essv19940,essv23446,essv2273,essv20136,essv22220,essv10341 M 271 0 0 "" NA07048,NA07345,NA07348,NA10831,NA10854,NA10859,NA11839,NA11840,NA11882,NA12003,NA12044,NA12145,NA12234,NA12236,NA12716,NA12751,NA12762,NA12813,NA18506,NA18529,NA18573,NA18611,NA18854,NA18859,NA18860,NA18862,NA18947,NA18966,NA18978,NA18981,NA18991,NA19094,NA19101,NA19127,NA19131,NA19132,NA19141,NA19142,NA19144,NA19194,NA19207,NA19210 nsv517274 2 131436958 131456898 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv661806,nssv673402,nssv653775,nssv679622,nssv654758,nssv681596,nssv685535,nssv686496,nssv696138,nssv656889,nssv658349,nssv693879,nssv667287,nssv655938,nssv674536 M 2026 0 15 "" essv11772 2 131439785 131953801 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18504 nsv10177 2 131440819 131442962 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27745 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19144 nsv10178 2 131471786 131482329 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28960 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18504 nsv441783 2 131475172 131477560 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv517124 2 131475203 131478698 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv687263,nssv693665,nssv675173,nssv683594,nssv663022,nssv680935,nssv680349,nssv683382,nssv692172,nssv656399,nssv677129,nssv665445,nssv653824,nssv679801,nssv676216,nssv673086 M 2026 0 16 "" nsv818081 2 131475203 131478698 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415606,nssv1415595 M 112 0 2 "" NA19141,NA19142 dgv1253e1 2 131615215 131953801 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv9702,essv8815,essv20171,essv9186,essv13455,essv14984,essv24720 M 271 0 0 "" NA11829,NA11832,NA18508,NA18870,NA18913,NA19128,NA19192 dgv1254e1 2 131615215 132290341 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv17115,essv6128,essv3783,essv1386,essv21699,essv13785,essv7213,essv21398,essv18177,essv6345,essv6221,essv21063,essv11499,essv5746,essv18769,essv5282,essv2037,essv1205,essv2168,essv7375,essv1095,essv2661,essv1492 M 271 0 0 "" NA06991,NA12057,NA12248,NA12740,NA12874,NA18532,NA18547,NA18593,NA18609,NA18623,NA18624,NA18636,NA18949,NA18951,NA18960,NA18961,NA18964,NA18967,NA18980,NA19007,NA19153,NA19171,NA19173 nsv214458 2 131678088 131678406 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233036 M 24 "" nsv10179 2 131684045 131686160 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28345 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18537 nsv433232 2 131722911 131730208 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463113 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA18956 dgv1255e1 2 131747626 131989151 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv11461,essv12954 M 271 0 0 "" NA18856,NA19102 nsv10180 2 131749458 131958101 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27940,nssv11468,nssv29094,nssv29020,nssv29238,nssv29019,nssv29208,nssv11588,nssv29050,nssv28136,nssv29096,nssv11963,nssv29178,nssv28633,nssv28023,nssv29088,nssv28108,nssv29124,nssv28888,nssv11558,nssv28652,nssv28015,nssv28989,nssv28673,nssv28698,nssv28869,nssv28236,nssv11903,nssv29080,nssv29049,nssv28899,nssv29148,nssv11933,nssv29184,nssv28858,nssv29058,nssv28959,nssv11498,nssv28205,nssv28578,nssv28746,nssv11873,nssv11993,nssv28337,nssv29214,nssv27822,nssv28990,nssv28508,nssv28585,nssv29126,nssv11528,nssv28356,nssv28658,nssv29156,nssv29118,nssv27845,nssv28618,nssv29066,nssv28186,nssv29154 M 31 0 20 Samples from several populations that are part of the HapMap project. "" NA07048,NA10847,NA10863,NA11830,NA12155,NA12740,NA18502,NA18504,NA18552,NA18563,NA18853,NA18860,NA18972,NA18975,NA18980,NA19007,NA19132,NA19144,NA19173,NA19240 dgv1256e1 2 131780178 132450035 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv3311,essv13713,essv23547,essv11148 M 271 0 0 "" NA06993,NA18972,NA19119,NA19211 essv7904 2 131788979 131931874 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19239 esv34412 2 131788979 132084698 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6985423,essv6980883,essv6980884 M 771 1 0 "" NA19140 nsv520930 2 131911111 132068718 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697694 S 2026 1 0 "" nsv818082 2 131911111 132068718 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415617 S 112 1 0 "" NA19140 dgv476n27 2 131911111 132132200 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv459385,nsv459374 M 1557 0 2 "" HGDP00460,HGDP00986 nsv459396 2 131911111 132132200 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536144 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01067 esv34704 2 131914844 132270165 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6990207,essv6986555,essv6978197,essv6978196,essv6978195 M 771 1 0 "" NA18976 essv2396 2 131914844 132310822 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18976 dgv1257e1 2 131917039 132450035 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv4483,essv19013,essv9827 M 271 0 0 "" NA12005,NA18552,NA18863 essv1836 2 131917039 132830766 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18976 nsv441784 2 131926764 131930172 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv522712 2 131931874 131995036 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698342 S 2026 1 0 "" nsv459407 2 131931874 132022483 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536152 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00670 nsv10181 2 131978543 131984239 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12000,nssv29079 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA18502,NA19221 essv7878 2 131999940 132097444 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19140 dgv1258e1 2 132013599 132290341 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv12846,essv2478,essv23956 M 271 0 0 "" NA12814,NA18999,NA19120 nsv834376 2 132017828 132186550 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442231,nssv1442230 M 95 2 0 "" nsv438370 2 132020704 132060795 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv471107 S 269 0 1 Samples from several populations that are part of the HapMap project. "" NA19140 nsv10182 2 132042142 132045515 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28405 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19007 nsv507032 2 132047235 132053235 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623350,nssv620729 M 4 2 0 "" NA15510,NA18994 nsv442834 2 132055740 132060100 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv10183 2 132065092 132069140 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11564 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18517 nsv10185 2 132091710 132137462 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv29110,nssv12023,nssv12030,nssv28738 M 31 1 3 Samples from several populations that are part of the HapMap project. "" NA12740,NA18504,NA18972,NA19221 nsv2926 2 132095305 132129628 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3028 S 9 1 0 "" NA18555 dgv1259e1 2 132112313 132290341 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv3901,essv24222,essv9231,essv19628,essv13484,essv10221,essv17249,essv14183 M 271 0 0 "" NA10856,NA12155,NA18503,NA18994,NA19128,NA19140,NA19152,NA19192 dgv1260e1 2 132112313 132548178 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv11636,essv14966,essv14726,essv24724,essv20969,essv19521,essv5493,essv5097,essv11760,essv158 M 271 0 0 "" NA11829,NA12801,NA12864,NA18504,NA18577,NA18632,NA18870,NA18968,NA19154,NA19159 nsv520855 2 132132200 132144820 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv678416,nssv676382 M 2026 0 2 "" nsv10186 2 132138745 132353255 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28625,nssv29186,nssv12143,nssv29139,nssv28258,nssv29170,nssv28286,nssv12053,nssv11618,nssv28692,nssv28158,nssv28445,nssv28208,nssv28776,nssv29109,nssv28713,nssv29200,nssv12083,nssv27917,nssv29244,nssv11648,nssv12173,nssv11511,nssv28836,nssv29216,nssv28255,nssv27278,nssv11481,nssv28806,nssv28485,nssv29169,nssv28665,nssv29140 M 31 0 17 Samples from several populations that are part of the HapMap project. "" NA07048,NA10847,NA10863,NA12155,NA12740,NA12872,NA18502,NA18504,NA18552,NA18860,NA18972,NA18975,NA18980,NA19007,NA19132,NA19144,NA19173 nsv524987 2 132144820 132156743 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701016 S 2026 0 1 "" nsv2927 2 132146769 132170552 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6869 S 9 1 0 "" NA12156 essv4317 2 132188211 132303772 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18564 essv19805 2 132191206 132197241 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12864 nsv834377 2 132202625 132369637 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442235,nssv1442233,nssv1442234,nssv1442236,nssv1442237,nssv1442238,nssv1442232 M 95 7 0 "" esv33695 2 132236797 132237093 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99540 S 51 0 1 "" 22335 essv19479 2 132253678 132304569 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12750 nsv527590 2 132267849 132330946 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704051 S 2026 0 1 "" nsv471420 2 132313796 132358709 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548230,nssv548231,nssv548229 M 3 "" nsv482054 2 132313796 132358709 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558415 S 1 1 0 "" KB1 essv5371 2 132364625 132548178 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18563 essv4862 2 132364625 132830766 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18540 nsv482055 2 132386266 132392966 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558416 S 1 1 0 "" KB1 nsv7328 2 132386842 132397862 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6870 S 9 0 0 "" NA12156 esv32919 2 132411171 132428795 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100077 S 51 1 0 "" 22086 nsv10187 2 132417867 132434411 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12060 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19221 dgv1261e1 2 132511786 132830766 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv23483,essv19289 M 271 0 0 "" NA07034,NA10838 essv21727 2 132511786 133031735 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12248 nsv526029 2 132567013 133185147 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702260 S 2026 1 0 "" esv32851 2 132607044 132882804 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101462,essv98788,essv97517,essv94356,essv96997,essv95724,essv99002,essv97198,essv99957,essv98025,essv98027 M 51 10 1 "" 21603,21606,21616,21808,21817,21841,21938,22075,22086,22259 nsv10188 2 132627063 132630605 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12203 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18972 nsv507033 2 132629196 132635196 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620730,nssv621665 M 4 2 0 "" NA10860,NA15510 essv899 2 132678628 132830766 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19000 nsv10189 2 132721623 132725081 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11487 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19132 essv1359 2 132786146 132976848 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19007 nsv10190 2 132789529 132843722 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28784,nssv12233 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA18563,NA18972 nsv10191 2 132799678 132881606 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11473,nssv28732,nssv29199,nssv28308,nssv11594,nssv28100,nssv28099,nssv28866,nssv28232,nssv28394,nssv28000,nssv29230,nssv12090,nssv28336,nssv28525,nssv28305,nssv11678,nssv28791,nssv12263,nssv28753,nssv28386,nssv27398 M 31 19 1 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10847,NA10863,NA11830,NA12155,NA12740,NA12872,NA18502,NA18504,NA18517,NA18537,NA18572,NA18853,NA18972,NA18975,NA18980,NA19007,NA19144,NA19221 nsv2928 2 132845025 132874478 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10238 S 9 1 0 "" NA18956 nsv213663 2 132876780 132884689 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232241 M 24 "" nsv2929 2 132981494 133010592 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1538 S 9 1 0 "" NA19240 nsv834378 2 133003528 133183138 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442241,nssv1442239 M 95 0 2 "" nsv10192 2 133013213 133015026 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11503 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18504 nsv471734 2 133013669 133014779 CNV Loss Hinds et al 2006 16327809 Oligo_aCGH,PCR Custom Perlegen arrays nssv646015 M 0.043 95 "" nsv459429 2 133042329 133087118 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536166 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00998 nsv508106 2 133072669 133078669 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618549,nssv622004 M 4 0 2 "" CHM,NA10860 dgv1262e1 2 133101579 133147577 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv9288,esv1371 M 271 0 0 "" NA19137 dgv228n21 2 133106740 133143969 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv528704,nsv515839 M 2026 9 0 "" dgv34n64 2 133111415 133142368 CNV Gain Wang_et_al_2007 17921354 SNP_array nsv818084,nsv818083 M 112 3 0 "" NA19160,NA19161,NA19239 dgv1263e1 2 133112423 133147577 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv13942,essv13116,essv9534,essv7903,essv11460,essv8082 M 271 0 0 "" NA18856,NA18859,NA19160,NA19161,NA19223,NA19239 nsv10193 2 133113550 133142680 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11541,nssv12150,nssv11533 M 31 3 0 Samples from several populations that are part of the HapMap project. "" NA18504,NA18860,NA19221 nsv433356 2 133114622 133142368 CNV Gain Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463237 S 9 1 0 Samples from several populations that are part of the HapMap project. "" NA18507 nsv459441 2 133114622 133143969 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536178 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00931 nsv442835 2 133115064 133117998 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv1264e1 2 133116608 133135989 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv9508,essv7997,essv11373,essv16584 M 271 0 0 "" NA18521,NA18860,NA19127,NA19221 nsv2930 2 133134829 133138159 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9578 S 9 1 0 "" NA18507 nsv10194 2 133149969 133165222 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12293,nssv28705 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18552,NA18972 nsv213758 2 133156137 133156701 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232336 M 24 "" nsv834379 2 133305712 133499333 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442242 S 95 1 0 "" nsv441785 2 133307260 133310297 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv2931 2 133459550 133504695 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7555 S 9 0 1 "" NA12156 nsv834381 2 133556403 133731726 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442243,nssv1442244 M 95 2 0 "" nsv834382 2 133562131 133725150 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442245 S 95 0 1 "" nsv528037 2 133606313 133608185 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704569 S 2026 1 0 "" nsv521538 2 133664111 133686533 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698154 S 2026 0 1 "" nsv459452 2 133674740 133709244 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536189 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00656 nsv834383 2 133707989 133740498 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442248,nssv1442247,nssv1442246 M 95 0 3 "" nsv459463 2 133739717 133767194 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536200 S 1557 0 1 "" 1780862575_A nsv526139 2 133785276 133785772 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702394 S 2026 0 1 "" nsv516915 2 133833563 133888394 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv682704,nssv674564,nssv680710,nssv654957,nssv679899,nssv657663 M 2026 6 0 "" nsv834384 2 133838961 134022380 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442249 S 95 1 0 "" nsv2933 2 133839916 133873711 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4461 S 9 1 0 "" NA12878 nsv522324 2 133919397 134007764 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695105 S 2026 0 1 "" nsv508871 2 134045525 134103988 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621177 S 4 1 0 "" NA15510 nsv507034 2 134092172 134098172 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617570,nssv621666,nssv623351 M 4 3 0 "" CHM,NA10860,NA18994 nsv516644 2 134134862 134224946 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700669,nssv669832,nssv679002 M 2026 2 1 "" nsv507035 2 134177100 134183100 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623352 S 4 1 0 "" NA18994 nsv2934 2 134202210 134246186 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7556 S 9 0 1 "" NA12156 nsv214115 2 134378007 134378338 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232693 M 24 "" nsv2935 2 134452816 134486321 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7557 S 9 1 0 "" NA12156 nsv526400 2 134484958 134493217 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702699 S 2026 0 1 "" nsv2936 2 134493177 134508842 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9579 S 9 1 0 "" NA18507 nsv519774 2 134579434 134586788 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697043 S 2026 0 1 "" nsv520254 2 134582315 134586788 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv662123,nssv699232,nssv681955 M 2026 0 3 "" nsv521314 2 134695131 134696410 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697920 S 2026 0 1 "" nsv508168 2 134720935 134811273 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618695,nssv620191 M 4 0 2 "" NA10860,NA15510 nsv2937 2 134724735 134757289 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6871 S 9 1 0 "" NA12156 nsv2938 2 134772195 134837106 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10239,nssv6872,nssv4462,nssv2295 M 9 0 4 "" NA12156,NA12878,NA18555,NA18956 nsv2939 2 134811631 134843650 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10240 S 9 1 0 "" NA18956 nsv522332 2 134819646 134823157 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695112 S 2026 0 1 "" nsv214814 2 134829047 134829111 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233392 M 24 "" nsv834385 2 134904938 135090319 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442250 S 95 1 0 "" nsv508107 2 135030447 135036447 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622005,nssv624281,nssv618550 M 4 0 3 "" CHM,NA10860,NA18994 nsv834386 2 135702183 135815117 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442252 S 95 1 0 "" nsv2940 2 135897597 135936550 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1539 S 9 0 1 "" NA19240 nsv2941 2 135990441 136024644 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4463 S 9 1 0 "" NA12878 nsv441786 2 136026511 136066283 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv2942 2 136414428 136428058 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3029 S 9 1 0 "" NA18555 nsv214727 2 136694589 136697097 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233305 M 24 "" nsv523997 2 136701608 137054475 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699857 S 2026 1 0 "" nsv834387 2 136809569 136918954 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442253,nssv1442254 M 95 0 2 "" nsv508108 2 136934698 136940698 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618551,nssv624282,nssv621532 M 4 0 3 "" CHM,NA15510,NA18994 nsv834388 2 136944019 137119468 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442255 S 95 0 1 "" nsv518597 2 137001395 137007303 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696044 S 2026 0 1 "" nsv515555 2 137003883 137007303 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv677613,nssv663892 M 2026 0 2 "" dgv1265e1 2 137031522 137074036 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv5008,esv1050 M 271 0 0 "" NA18571 nsv215286 2 137121971 137122035 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233864 M 24 "" nsv516011 2 137413966 137581069 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv655425,nssv665706,nssv658298 M 2026 0 3 "" nsv214504 2 137421718 137430123 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233082 M 24 "" nsv7329 2 137499487 139826835 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6874 S 9 0 0 "" NA12156 nsv525899 2 137519019 137601744 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702103 S 2026 0 1 "" esv33452 2 137524150 137524501 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100718,essv97212 M 51 2 0 "" 21656,22075 esv33945 2 137531003 137538571 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97572 S 51 0 1 "" 21616 nsv459474 2 137601280 137658152 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536211 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01249 nsv526606 2 137619515 137648798 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702926 S 2026 0 1 "" nsv508169 2 137681885 137731130 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620192 S 4 0 1 "" NA15510 esv32614 2 137710438 137711112 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100055 S 51 0 1 "" 22086 nsv508872 2 137770015 137786807 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621178 S 4 1 0 "" NA15510 nsv2944 2 137823437 137868189 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5819 S 9 0 1 "" NA19129 nsv521939 2 137878097 137882819 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694708 S 2026 0 1 "" esv33322 2 137899894 137906903 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98835 S 51 0 1 "" 21606 nsv524693 2 137907232 137913686 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700670 S 2026 0 1 "" nsv215433 2 138079021 138079364 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv234011 M 24 "" dgv73n6 2 138333698 138333786 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv213876,nsv214104 M 24 "" nsv441787 2 138342929 138346081 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv834389 2 138677191 138848521 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442256 S 95 1 0 "" nsv7330 2 138797546 138881915 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6875,nssv6876,nssv1540 M 9 0 0 "" NA12156,NA19240 nsv2945 2 138813087 138857876 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7558 S 9 0 1 "" NA12156 nsv508109 2 138839945 138845945 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618552,nssv621533,nssv624283 M 4 0 3 "" CHM,NA15510,NA18994 nsv213673 2 138958615 138958688 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232251 M 24 "" nsv834390 2 139003148 139167761 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442257 S 95 1 0 "" nsv507036 2 139166525 139172525 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620732,nssv623353,nssv621667,nssv617571 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv213208 2 139194407 139196357 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv231786 M 24 "" nsv524273 2 139333705 139437001 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700171 S 2026 1 0 "" nsv525196 2 139347733 139393863 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701277 S 2026 0 1 "" nsv818085 2 139385929 139418838 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417479 S 112 1 0 "" NA18960 nsv516565 2 139630948 139637873 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv669194,nssv674253 M 2026 0 2 "" nsv527000 2 139637873 139669755 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703375 S 2026 0 1 "" nsv2946 2 139764056 139808736 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7559 S 9 0 1 "" NA12156 nsv2947 2 139817548 139863279 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6877 S 9 0 1 "" NA12156 nsv520050 2 139921051 139921325 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697196 S 2026 1 0 "" nsv517622 2 140011923 140038420 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv684257,nssv663478,nssv680513,nssv673789,nssv652556 M 2026 0 5 "" nsv508110 2 140229055 140235055 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624284 S 4 0 1 "" NA18994 nsv518361 2 140394910 140396726 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695788 S 2026 0 1 "" nsv516560 2 140418795 140420473 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv669672,nssv669174 M 2026 0 2 "" nsv526712 2 140704216 140714361 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703051 S 2026 0 1 "" nsv834392 2 140754632 140920345 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442258 S 95 1 0 "" nsv2948 2 140858692 140892739 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3030 S 9 1 0 "" NA18555 nsv459496 2 140944857 140985051 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536232 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01379 nsv459507 2 140963829 141004072 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536243 S 1557 0 1 "" 1787431198_A nsv459518 2 141052665 141116655 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536254 S 1557 0 1 "" 1780862042_A nsv433205 2 141104002 141119426 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463086 S 9 0 1 "" NA15510 nsv459529 2 141154892 141183832 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536264 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01075 dgv229n21 2 141174358 141183832 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv520152,nsv528618 M 2026 2 0 "" nsv528276 2 141188128 141195954 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704846 S 2026 1 0 "" dgv477n27 2 141262483 141321629 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv459552,nsv459540 M 1557 0 2 "" 1780862310_A,NINDS_212 nsv507037 2 141483519 141489519 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623354 S 4 1 0 "" NA18994 nsv459574 2 141667353 141700003 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536306 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00963 nsv459585 2 141701180 141755364 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536317 S 1557 0 1 "" 1780854477_A nsv818086 2 141738784 141755364 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416916 S 112 0 1 "" NA19137 dgv1266e1 2 141905123 142079679 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv16065,esv855 M 271 0 0 "" NA18501 nsv517341 2 141942729 141946973 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv665998,nssv651778,nssv668553,nssv685643,nssv670165,nssv672316,nssv654958 M 2026 0 7 "" nsv522203 2 141967866 141975147 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694976 S 2026 0 1 "" nsv215437 2 141983783 141988414 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv234015 M 24 "" nsv522093 2 142006098 142076329 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694865 S 2026 1 0 "" nsv459596 2 142014461 142052240 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536328 S 1557 0 1 "" 1780854491_A dgv161e55 2 142015000 142073000 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv34606,esv34823 M 771 2 0 "" NA18500,NA18501 nsv523571 2 142021647 142022689 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699353 S 2026 0 1 "" essv9580 2 142029855 142079679 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18501 nsv526332 2 142042525 142044260 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702622 S 2026 0 1 "" nsv214199 2 142045926 142045926 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232777 M 24 "" nsv516298 2 142054140 142060500 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv659836,nssv667402,nssv676081 M 2026 3 0 "" nsv214554 2 142055909 142055909 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233132 M 24 "" nsv10196 2 142063344 142065704 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27510 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA12872 nsv459618 2 142080720 142097478 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536349 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01237 nsv441788 2 142089014 142090734 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv834393 2 142090446 142265296 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442259 S 95 1 0 "" nsv459629 2 142097132 142128774 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536360 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00090 nsv459640 2 142124943 142179306 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536371 S 1557 0 1 "" NINDS_101 nsv518726 2 142153963 142155440 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696176 S 2026 0 1 "" nsv214324 2 142184736 142185060 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232902 M 24 "" nsv834394 2 142263957 142426996 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442260 S 95 1 0 "" nsv433206 2 142303513 142320607 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463087 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA19129 nsv459651 2 142330717 142348389 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536382 S 1557 0 1 "" 1780862530_A nsv508111 2 142388315 142394315 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624285,nssv622006 M 4 0 2 "" NA10860,NA18994 nsv459674 2 142426292 142470639 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536404 S 1557 0 1 "" NINDS_91 nsv526107 2 142602250 142717980 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702355 S 2026 1 0 "" nsv2949 2 142737233 142756651 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9353 S 9 1 0 "" NA18517 nsv459685 2 142742917 142797708 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536411 S 1557 0 1 "" NINDS_241 nsv459696 2 142805931 142832297 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536414 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00129 nsv818087 2 142828060 142833126 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417832 S 112 1 0 "" NA18852 nsv2950 2 142868941 142913636 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7560 S 9 0 1 "" NA12156 nsv516492 2 142940945 142987753 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701044,nssv668675,nssv693905 M 2026 0 3 "" nsv519905 2 143153805 143165103 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv659428,nssv689672 M 2026 0 2 "" nsv526763 2 143198905 143252102 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703115 S 2026 0 1 "" nsv2951 2 143275200 143309517 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3031 S 9 1 0 "" NA18555 nsv518532 2 143309460 143309564 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694246 S 2026 0 1 "" nsv834395 2 143368930 143563116 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442261 S 95 1 0 "" nsv2952 2 143439085 143445131 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1541 S 9 1 0 "" NA19240 nsv517623 2 143508558 143512059 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv658497,nssv672179,nssv658767,nssv659399,nssv668974,nssv669509,nssv680148,nssv693937,nssv657588,nssv691017,nssv655552,nssv660689,nssv675543,nssv678009,nssv652557 M 2026 0 15 "" nsv515932 2 143587460 143590487 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv665361,nssv658364,nssv688281,nssv662359 M 2026 0 4 "" nsv507038 2 143609411 143615411 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621668 S 4 1 0 "" NA10860 nsv2953 2 143645595 143677020 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4464 S 9 1 0 "" NA12878 nsv515703 2 143761306 143761414 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv656447,nssv664483,nssv687814 M 2026 0 3 "" nsv523591 2 143807592 143830242 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699381 S 2026 0 1 "" nsv524638 2 143821850 143830242 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700603 S 2026 0 1 "" nsv2955 2 143840516 143849123 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5820 S 9 1 0 "" NA19129 nsv519096 2 143892893 143897568 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696570 S 2026 0 1 "" nsv213976 2 144073287 144073382 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232554 M 24 "" nsv2956 2 144117581 144142356 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4465 S 9 1 0 "" NA12878 nsv459707 2 144322100 144350801 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536425 S 1557 0 1 "" NINDS_162 nsv2957 2 144448275 144464041 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5822 S 9 1 0 "" NA19129 nsv521881 2 144501981 144503318 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694652 S 2026 0 1 "" nsv834396 2 144675919 144853197 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442263 S 95 1 0 "" nsv215339 2 145075513 145079970 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233917 M 24 "" nsv213537 2 145127185 145127251 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232115 M 24 "" nsv215243 2 145127212 145127277 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233821 M 24 "" nsv215265 2 145180500 145180500 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233843 M 24 "" nsv834397 2 145273260 145442360 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442265,nssv1442264 M 95 2 0 "" nsv834398 2 145493151 145663888 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442266 S 95 0 1 "" nsv834399 2 145844157 146019325 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442267 S 95 1 0 "" nsv834400 2 146027978 146214491 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442268 S 95 1 0 "" nsv520529 2 146091614 146095027 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv690365,nssv672136 M 2026 0 2 "" nsv215156 2 146180700 146180700 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233734 M 24 "" nsv2958 2 146525436 146560127 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3032 S 9 1 0 "" NA18555 nsv215260 2 146565436 146566754 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233838 M 24 "" nsv2959 2 146608515 146643817 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4466 S 9 1 0 "" NA12878 nsv2960 2 146673318 146724765 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv11022,nssv4467,nssv9354,nssv10242,nssv2296,nssv6878 M 9 0 6 "" NA12156,NA12878,NA15510,NA18517,NA18555,NA18956 nsv10197 2 146688620 146710931 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11571,nssv11708,nssv11517,nssv29229,nssv12323,nssv28085,nssv28282,nssv11563,nssv28770,nssv28358,nssv28591,nssv29246,nssv28821,nssv28918,nssv28426,nssv12180,nssv28995,nssv28355 M 31 12 6 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10847,NA11830,NA12155,NA18502,NA18504,NA18564,NA18860,NA18942,NA18972,NA18975,NA18980,NA19132,NA19144,NA19173,NA19221,NA19240 dgv62n17 2 146694357 146710831 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437296,nsv437295 M 60 0 2 "" NA18503,NA19202 nsv225 2 146694582 146719534 CNV Loss Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv225 S 1 0 1 "" NA15510 nsv442836 2 146698136 146700666 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv438371 2 146698691 146709648 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv471121,nssv471129,nssv471109,nssv471148,nssv471160,nssv471125,nssv471137,nssv471118,nssv471116,nssv471158,nssv471112,nssv471108,nssv471130,nssv471138,nssv471150,nssv471154,nssv471151,nssv471163,nssv471145,nssv471133,nssv471139,nssv471123,nssv471141,nssv471162,nssv471155,nssv471119,nssv471110,nssv471165,nssv471147,nssv471115,nssv471143,nssv471149,nssv471126,nssv471128,nssv471136,nssv471120,nssv471161,nssv471132,nssv471111,nssv471131,nssv471140,nssv471156,nssv471122,nssv471144,nssv471166,nssv471117,nssv471134,nssv471164,nssv471153,nssv471114,nssv471142,nssv471127,nssv471152,nssv471167,nssv471159 M 269 0 54 Samples from several populations that are part of the HapMap project. "" NA07034,NA07048,NA07055,NA07348,NA10846,NA10859,NA11829,NA11832,NA11882,NA12144,NA12154,NA12155,NA12234,NA12760,NA12865,NA12875,NA12878,NA18532,NA18540,NA18542,NA18547,NA18550,NA18564,NA18566,NA18570,NA18571,NA18573,NA18579,NA18582,NA18603,NA18609,NA18612,NA18620,NA18621,NA18633,NA18943,NA18948,NA18953,NA18956,NA18961,NA18964,NA18966,NA18969,NA18971,NA18972,NA18974,NA18975,NA18980,NA18987,NA18990,NA18992,NA18994,NA18995,NA19003 nsv508170 2 146699818 146715389 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622819,nssv620193 M 4 0 2 "" NA15510,NA18994 dgv22n14 2 146700287 146709648 CNV Loss Cooper et al 2008 18776910 SNP_array nsv433243,nsv433254,nsv433265 M 9 0 3 "" NA12878,NA15510,NA18956 nsv508112 2 146850658 146856658 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622008 S 4 0 1 "" NA10860 nsv834401 2 146927975 147093799 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442269 S 95 0 1 "" nsv834403 2 147071569 147262594 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442270 S 95 1 0 "" nsv834404 2 147262649 147454265 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442271 S 95 1 0 "" nsv834405 2 147338109 147516606 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442276,nssv1442275,nssv1442274,nssv1442272 M 95 0 4 "" nsv507039 2 147556794 147562794 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620733 S 4 1 0 "" NA15510 nsv518654 2 147621015 147675524 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694258 S 2026 0 1 "" nsv508113 2 147699994 147705994 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624286,nssv621534,nssv622009 M 4 0 3 "" NA10860,NA15510,NA18994 nsv2961 2 147767970 147781757 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5823 S 9 0 1 "" NA19129 nsv834406 2 147963347 148116855 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442277 S 95 1 0 "" nsv523090 2 148870744 148944605 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698782 S 2026 0 1 "" esv2751831 2 148985090 149931111 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6982895,essv6982894,essv6982893,essv6988600,essv6986303 M 771 1 0 "" BEC_608 nsv518198 2 149044601 149053715 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694211 S 2026 0 1 "" nsv527539 2 149116802 149163983 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704000 S 2026 0 1 "" nsv508873 2 149189671 149244759 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623876 S 4 1 0 "" NA18994 nsv2962 2 149442130 149459307 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7561 S 9 0 1 "" NA12156 nsv508172 2 149513214 149619512 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618696 S 4 0 1 "" NA10860 nsv508874 2 149621475 149621475 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619292 S 4 1 0 "" NA10860 nsv2963 2 149627288 149652564 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1542 S 9 1 0 "" NA19240 nsv834407 2 149628482 149780713 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442278 S 95 0 1 "" nsv834408 2 149694230 149884414 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442279 S 95 1 0 "" dgv230n21 2 149768027 149774219 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv521064,nsv527796 M 2026 0 2 "" nsv515662 2 149772090 149779605 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv664285,nssv659799,nssv674026,nssv670370 M 2026 0 4 "" nsv459718 2 149804799 149817914 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536436 S 1557 1 0 "" 1798860565_A esv33982 2 149851262 149851656 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100913,essv98187,essv95622,essv93748,essv97260,essv99988 M 51 6 0 "" 21656,21772,21841,21972,22075,22086 esv33162 2 149852805 149852988 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100016 S 51 0 1 "" 22086 nsv2964 2 149957962 149993274 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1543 S 9 1 0 "" NA19240 nsv834409 2 150136854 150273519 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442280 S 95 1 0 "" nsv834410 2 150325805 150500805 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442281 S 95 0 1 "" nsv519036 2 150496273 150586885 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696504 S 2026 0 1 "" nsv834411 2 150522720 150707819 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442282 S 95 1 0 "" nsv438372 2 150551516 150552874 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv471170,nssv471169 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA07048,NA07055 nsv459729 2 150675035 150713065 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536447 S 1557 0 1 "" 1780854464_A nsv469524 2 150753008 150902428 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649587 M 265 0 0 Samples from several populations that are part of the HapMap project. "" nsv834412 2 150839778 150942146 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442285,nssv1442283 M 95 1 1 "" nsv523180 2 150844749 150847552 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698893 S 2026 0 1 "" nsv2967 2 150852337 150864609 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4468 S 9 0 1 "" NA12878 nsv441789 2 150856959 150863238 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv518518 2 150889234 150889673 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695959 S 2026 0 1 "" nsv2968 2 150902328 150915213 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7562 S 9 0 1 "" NA12156 nsv834414 2 151034882 151238817 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442286 S 95 1 0 "" nsv834415 2 151199762 151384157 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442287,nssv1442288 M 95 2 0 "" nsv2969 2 151282557 151311961 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4470 S 9 1 0 "" NA12878 dgv1267e1 2 151282785 151669718 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv22918,esv826 M 271 0 0 "" NA12760 essv17413 2 151328047 151575481 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12760 nsv834416 2 151343292 151525420 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442290,nssv1442289,nssv1442291 M 95 1 2 "" esv35134 2 151368000 151567000 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6978896,essv6978897,essv6990299,essv6990300,essv6986744 M 771 1 0 "" NA12760 nsv2970 2 151431773 151462572 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5824 S 9 1 0 "" NA19129 nsv214745 2 151466852 151467104 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233323 M 24 "" nsv525350 2 151537208 151870302 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701469 S 2026 0 1 "" esv34659 2 151540388 153542254 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6989180,essv6987802,essv6987803,essv6980508,essv6980509,essv6980510,essv6980511,essv6980512 M 771 0 1 "" NA19203 nsv515610 2 151541199 151543641 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv671296,nssv664083,nssv681122 M 2026 0 3 "" nsv523849 2 151543641 151969032 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699683 S 2026 1 0 "" nsv2971 2 151551309 151595933 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7563 S 9 0 1 "" NA12156 nsv528766 2 151600151 151601724 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705430 S 2026 0 1 "" esv32701 2 151621071 151631721 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100878 S 51 0 1 "" 21656 nsv438373 2 151689579 151695316 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv471171,nssv471172 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA19203,NA19205 nsv437297 2 151694679 151699069 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467178 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19205 nsv213556 2 151728592 151728867 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232134 M 24 "" nsv834417 2 151805981 151980458 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442292 S 95 1 0 "" nsv2972 2 152024300 152057946 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5825 S 9 1 0 "" NA19129 nsv834418 2 152031311 152211024 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442293 S 95 1 0 "" nsv437298 2 152145626 152181869 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467179 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19205 nsv438374 2 152147603 152156926 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv471174,nssv471173 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA19203,NA19205 nsv2973 2 152172012 152233028 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2297,nssv10243 M 9 2 0 "" NA18555,NA18956 nsv10198 2 152195576 152289152 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12210 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19221 nsv2974 2 152227003 152324963 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2299,nssv4471 M 9 0 2 "" NA12878,NA18555 nsv469804 2 152229937 152396390 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649825 M 265 0 0 Samples from several populations that are part of the HapMap project. "" nsv2975 2 152245960 152274115 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10244 S 9 1 0 "" NA18956 nsv471510 2 152259862 152291645 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv547869,nssv547868,nssv547870 M 3 "" nsv508173 2 152261801 152268770 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622820 S 4 0 1 "" NA18994 nsv226 2 152282605 152306104 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv226 S 1 1 0 "" NA15510 nsv2976 2 152282605 152306104 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv11023 S 9 1 0 "" NA15510 nsv2978 2 152373350 152406962 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3034 S 9 1 0 "" NA18555 nsv507040 2 152420498 152426498 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620734,nssv617572,nssv621669,nssv623355 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv7331 2 152621897 156695274 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1544 S 9 0 0 "" NA19240 nsv459740 2 152811549 152870544 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536458 S 1557 0 1 "" NINDS_166 nsv437299 2 152982551 152995899 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467180 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18914 nsv834419 2 153004928 153206984 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442294,nssv1442297 M 95 1 1 "" nsv2979 2 153163445 153195235 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2300 S 9 1 0 "" NA18555 nsv834420 2 153165154 153360968 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442298 S 95 0 1 "" nsv834421 2 153295617 153489743 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442300,nssv1442299 M 95 0 2 "" nsv834422 2 153414956 153568577 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442302,nssv1442317,nssv1442306,nssv1442321,nssv1442310,nssv1442309,nssv1442314,nssv1442311,nssv1442313,nssv1442312,nssv1442301,nssv1442315,nssv1442319,nssv1442316,nssv1442320,nssv1442322,nssv1442303,nssv1442305,nssv1442308,nssv1442326,nssv1442325,nssv1442323,nssv1442324,nssv1442304 M 95 24 0 "" dgv1268e1 2 153450427 153688865 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv783,essv6669,essv798 M 271 0 0 "" NA18608,NA18956 dgv1269e1 2 153480707 153624340 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv6939,essv3430 M 271 0 0 "" NA18608,NA18956 nsv10199 2 153484545 153499973 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28800,nssv28150,nssv27620,nssv11738,nssv28404,nssv28466,nssv28135,nssv28814,nssv28332,nssv11547,nssv27147,nssv11593,nssv28801,nssv28434,nssv11601,nssv28385,nssv11624,nssv28896,nssv28978 M 31 19 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10847,NA10863,NA11830,NA12155,NA12740,NA12802,NA12872,NA18504,NA18517,NA18537,NA18563,NA18853,NA18860,NA18980,NA19132,NA19240 nsv2980 2 153485490 153632834 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10245,nssv7564 M 9 0 2 "" NA12156,NA18956 nsv433207 2 153493313 153585957 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463088 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA18956 nsv441792 2 153495694 153622292 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv162e55 2 153509000 153598000 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv35136,esv34667 M 771 0 2 "" NA18608,NA18956 nsv818088 2 153510439 153614526 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417317 S 112 0 1 "" NA18608 nsv834423 2 153526053 153710143 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442327,nssv1442328 M 95 2 0 "" nsv10200 2 153621175 153625424 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28745,nssv11577,nssv29025,nssv27728,nssv28506,nssv28474,nssv28200,nssv28851,nssv28631,nssv11623,nssv11489,nssv12240,nssv28830,nssv29008,nssv11472,nssv12353,nssv28425,nssv28185,nssv28444,nssv28407,nssv28149,nssv27277,nssv28381,nssv11798,nssv28595,nssv11654 M 31 25 1 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10847,NA10863,NA11830,NA12155,NA12802,NA12872,NA18502,NA18504,NA18517,NA18537,NA18552,NA18564,NA18572,NA18853,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19144,NA19173,NA19221,NA19240 nsv524790 2 153722459 153725111 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700782 S 2026 0 1 "" nsv508114 2 153755701 153761701 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618553,nssv622010 M 4 0 2 "" CHM,NA10860 nsv834425 2 153841153 154028832 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442337,nssv1442339,nssv1442338,nssv1442341,nssv1442335,nssv1442333,nssv1442334,nssv1442343,nssv1442331,nssv1442332,nssv1442336,nssv1442330,nssv1442342 M 95 13 0 "" nsv459751 2 153888446 153956351 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536469 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01261 nsv459762 2 153910460 153970059 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536480 S 1557 0 1 "" 1780854219_A nsv517247 2 153915929 153941309 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv654117,nssv691792 M 2026 0 2 "" nsv526920 2 153915929 154029779 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703283 S 2026 1 0 "" nsv2981 2 153925088 153955665 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5826 S 9 1 0 "" NA19129 nsv213259 2 153977568 153983331 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv231837 M 24 "" nsv459774 2 153996532 154029779 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536492 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00206 dgv1270e1 2 154188586 154346292 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv4792,essv2965,essv22452,essv12155,essv5530,essv6183,essv7226,essv9172,essv15605,essv15146,essv9618,essv15405,essv21022,essv7344,essv17500,essv24008,essv20253,essv24523,essv10570,essv7580,essv6868,essv4623,esv214,essv19280,essv23087,essv11617,essv22516,essv19893,essv23906,essv25007,essv15330,essv18146,essv14975,essv8128,essv19689,essv19205,essv17980,essv18721,essv1278,essv21678,essv489,essv14765,essv13512,essv12676,essv15472 M 271 0 0 "" NA06991,NA10838,NA10839,NA11882,NA11993,NA12003,NA12144,NA12248,NA12264,NA12716,NA12761,NA12762,NA12802,NA12812,NA12813,NA12814,NA12865,NA12874,NA18500,NA18505,NA18529,NA18532,NA18545,NA18547,NA18570,NA18594,NA18605,NA18620,NA18862,NA18870,NA18952,NA18981,NA18995,NA19101,NA19128,NA19129,NA19137,NA19141,NA19154,NA19159,NA19160,NA19203,NA19206,NA19240 nsv834426 2 154188619 154373476 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442344 S 95 1 0 "" nsv2982 2 154282446 154293745 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2301 S 9 0 1 "" NA18555 nsv213488 2 154317481 154317481 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232066 M 24 "" nsv459796 2 154408314 154463626 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536513 S 1557 0 1 "" 1780862014_A nsv519974 2 154514236 154518319 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv659778,nssv675794,nssv684025,nssv700955 M 2026 0 4 "" nsv508115 2 154721838 154727838 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622011 S 4 0 1 "" NA10860 esv33780 2 154722283 154724234 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101526,essv101257,essv98293,essv96894,essv95321,essv95783,essv99121,essv92902,essv93756,essv97272,essv93206,essv98051,essv100375 M 51 0 13 "" 21603,21618,21772,21817,21872,21911,21938,21939,21972,22075,22170,22259,22300 nsv433208 2 154770212 154843213 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463089 S 9 0 1 "" NA15510 nsv2983 2 154774564 154803156 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2302 S 9 1 0 "" NA18555 nsv834427 2 154849513 155024889 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442345 S 95 0 1 "" nsv834428 2 154879933 154901859 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442346,nssv1442349,nssv1442348,nssv1442347 M 95 1 3 "" nsv518339 2 154897511 154897647 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695768 S 2026 0 1 "" nsv459829 2 155039126 155070769 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536521 S 1557 0 1 "" 1798860114_A nsv459851 2 155061842 155083028 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536522 S 1557 0 1 "" 1780862109_A nsv459862 2 155146337 155197570 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536530 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00639 nsv518171 2 155196285 155197570 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695592 S 2026 0 1 "" nsv519386 2 155259739 155273223 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv681740,nssv655771 M 2026 0 2 "" nsv522621 2 155273223 155284554 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv706017 S 2026 0 1 "" nsv818090 2 155291081 155308445 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416324 S 112 0 1 "" NA18855 nsv818091 2 155299863 155308445 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416325 S 112 0 1 "" NA18857 nsv834429 2 155345104 155504794 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442350 S 95 1 0 "" nsv2984 2 155440610 155462813 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5827 S 9 1 0 "" NA19129 nsv214008 2 155621195 155621195 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232586 M 24 "" nsv214789 2 155621206 155621206 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233367 M 24 "" nsv821630 2 156122315 156292745 CNV Loss Sebat_et_al_2004 15273396 ROMA Custom Nimblegen photoprint 85000 probe ROMA oligo array nssv1421351,nssv1421353 M 31 0 2 "" nsv214273 2 156210912 156210968 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232851 M 24 "" nsv2985 2 156237112 156271478 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1546 S 9 1 0 "" NA19240 dgv1271e1 2 156262297 156424935 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv362,essv11828 M 271 0 0 "" NA18521 nsv2986 2 156333500 156362438 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4472,nssv3035 M 9 2 0 "" NA12878,NA18555 nsv459873 2 156366678 156383248 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536537 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00779 nsv523011 2 156513688 156517624 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698686 S 2026 0 1 "" nsv818092 2 156577429 156601474 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415620 S 112 0 1 "" NA12248 nsv834430 2 156584571 156753453 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442353,nssv1442352 M 95 2 0 "" nsv818093 2 156592341 156620922 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415814 S 112 0 1 "" NA11992 nsv519097 2 156645093 156668332 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696571 S 2026 0 1 "" nsv508174 2 156851909 156909031 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622821 S 4 0 1 "" NA18994 nsv524755 2 156878757 156880882 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700746 S 2026 0 1 "" nsv2987 2 157125208 157169711 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4655 S 9 0 1 "" NA19129 nsv214820 2 157243086 157251010 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233398 M 24 "" nsv834431 2 157252716 157414175 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442354 S 95 0 1 "" nsv523145 2 157322371 157328024 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698853 S 2026 1 0 "" nsv507041 2 157334510 157340510 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621670 S 4 1 0 "" NA10860 esv32911 2 157507450 157507773 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93717 S 51 0 1 "" 21972 nsv517745 2 157623344 157627040 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv672420,nssv689144,nssv684078,nssv653082 M 2026 0 4 "" nsv518087 2 157623344 157663378 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695500 S 2026 0 1 "" nsv834432 2 157979049 158152149 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442356,nssv1442355 M 95 2 0 "" nsv2989 2 158047249 158079661 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10246 S 9 1 0 "" NA18956 nsv517563 2 158357247 158357317 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv692060,nssv658578,nssv683560,nssv652366,nssv665780 M 2026 0 5 "" nsv519776 2 158357317 158367735 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697044 S 2026 0 1 "" nsv527541 2 158522037 158530625 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704002 S 2026 0 1 "" nsv2990 2 158570630 158604757 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7565 S 9 1 0 "" NA12156 nsv508875 2 158594291 158615493 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619293,nssv618011,nssv621179,nssv623877 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv834433 2 158597311 158744691 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442357 S 95 1 0 "" esv33192 2 158597430 158598684 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100780 S 51 1 0 "" 21656 nsv2991 2 158699272 158723023 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9580 S 9 1 0 "" NA18507 nsv517458 2 158803302 158803833 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv689124,nssv663150,nssv688636,nssv656120,nssv661653,nssv655907,nssv664949,nssv663374,nssv686994,nssv655283,nssv652070,nssv668787,nssv661586,nssv670537,nssv693190 M 2026 0 15 "" nsv519147 2 158803302 158817033 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696624 S 2026 0 1 "" nsv508876 2 158957750 159022135 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619294,nssv623878 M 4 2 0 "" NA10860,NA18994 nsv2992 2 158998999 159022952 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5828,nssv7566 M 9 2 0 "" NA12156,NA19129 nsv459885 2 159076155 159151433 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536546 S 1557 0 1 "" 1782681093_A nsv834434 2 159259611 159481142 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442358 S 95 1 0 "" dgv478n27 2 159477241 159778973 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv459896,nsv459907 M 1557 2 0 "" 1780862197_A,HGDP01365 nsv213414 2 159487504 159488381 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv231992 M 24 "" nsv441793 2 159536203 159555603 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv524373 2 159702094 159702911 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700285 S 2026 0 1 "" nsv518893 2 159702094 159759405 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696352 S 2026 1 0 "" nsv2993 2 159734190 159766015 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6879 S 9 1 0 "" NA12156 nsv433277 2 159785094 159786958 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463158 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA12156 esv33791 2 159909222 159909797 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93280 S 51 1 0 "" 22170 nsv214147 2 159919801 159919801 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232725 M 24 "" esv33532 2 159923936 159924763 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv96829,essv99669,essv96378 M 51 0 3 "" 21659,22217,22371 nsv508175 2 159964677 159989913 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618697,nssv622822 M 4 0 2 "" NA10860,NA18994 nsv213684 2 159974625 159977155 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232262 M 24 "" nsv2994 2 159984640 160021706 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6880 S 9 0 1 "" NA12156 nsv459918 2 160064225 160108483 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536572 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00734 nsv2995 2 160113364 160146661 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4473 S 9 1 0 "" NA12878 nsv507042 2 160279342 160285342 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621671 S 4 1 0 "" NA10860 nsv2996 2 160320433 160350556 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10247 S 9 1 0 "" NA18956 nsv834436 2 160447848 160623282 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442359 S 95 0 1 "" nsv437546 2 160480629 160500163 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467427 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA07048 nsv2997 2 160667085 160711859 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7567 S 9 0 1 "" NA12156 nsv213665 2 160681359 160681681 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232243 M 24 "" nsv528083 2 160824299 160840573 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704619 S 2026 0 1 "" nsv2998 2 161063575 161096585 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5829 S 9 1 0 "" NA19129 nsv3000 2 161115951 161147688 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5830 S 9 1 0 "" NA19129 nsv3001 2 161168236 161205124 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7568 S 9 0 1 "" NA12156 nsv507043 2 161270718 161276718 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623356 S 4 1 0 "" NA18994 nsv3002 2 161333395 161366976 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3036 S 9 1 0 "" NA18555 nsv3003 2 161413219 161418182 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3037 S 9 1 0 "" NA18555 nsv215356 2 161621118 161621441 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233934 M 24 "" nsv834437 2 161757792 161950221 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442360 S 95 1 0 "" nsv518357 2 161764346 161774806 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695784 S 2026 0 1 "" nsv522246 2 161786432 161788761 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695026 S 2026 0 1 "" nsv507044 2 161848635 161854635 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622826 S 4 1 0 "" NA18994 nsv3004 2 161865133 161899599 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4474 S 9 1 0 "" NA12878 nsv437557 2 161877080 161918147 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467438 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA07048 nsv459934 2 161885324 162071339 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536582 S 1557 0 1 "" 1780862414_A nsv437568 2 162022652 162050676 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467449 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA07048 nsv818094 2 162065761 162071531 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415621 S 112 0 1 "" NA12248 nsv3005 2 162122201 162167138 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7569 S 9 0 1 "" NA12156 nsv3006 2 162285960 162317555 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5832 S 9 1 0 "" NA19129 nsv508116 2 162294199 162300199 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622012,nssv623879,nssv621535,nssv618554 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv834438 2 162305306 162464354 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442361 S 95 1 0 "" nsv3007 2 162313991 162358862 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7570 S 9 0 1 "" NA12156 nsv519410 2 162454476 162466232 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696838 S 2026 1 0 "" nsv3008 2 162648371 162680218 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9581,nssv10248 M 9 2 0 "" NA18507,NA18956 nsv834439 2 162739135 162905473 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442363,nssv1442364 M 95 2 0 "" nsv508117 2 162814178 162820178 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618555 S 4 0 1 "" CHM nsv834440 2 162827775 163000845 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442365,nssv1442367,nssv1442366 M 95 3 0 "" nsv3009 2 162854843 162887567 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6881 S 9 1 0 "" NA12156 nsv3011 2 163211442 163244408 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4475 S 9 1 0 "" NA12878 nsv214757 2 163491929 163492243 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233335 M 24 "" nsv213705 2 163504134 163504134 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232283 M 24 "" nsv834441 2 163972545 164146561 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442368 S 95 0 1 "" nsv518800 2 163998577 163998664 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696253 S 2026 0 1 "" nsv3012 2 164024110 164058140 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3038 S 9 1 0 "" NA18555 nsv459935 2 164101442 164168196 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536583 S 1557 0 1 "" 1780862404_A nsv437579 2 164121443 164134474 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467460 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA07048 nsv3013 2 164156416 164179626 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10249 S 9 1 0 "" NA18956 nsv515668 2 164265938 164267948 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv677238,nssv664313,nssv685374,nssv679589,nssv663215,nssv672987,nssv657615,nssv684646,nssv670240,nssv672216,nssv684165,nssv691110,nssv662016,nssv677922,nssv685206,nssv662147,nssv689580,nssv682678,nssv655553 M 2026 0 19 "" nsv834442 2 164329155 164509133 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442370,nssv1442369,nssv1442371 M 95 3 0 "" nsv213604 2 164369052 164371190 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232182 M 24 "" nsv441794 2 164468995 164470631 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv834443 2 164524007 164671059 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442372 S 95 1 0 "" nsv519129 2 164524871 164543078 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696608 S 2026 0 1 "" nsv517875 2 165306529 165503315 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695281 S 2026 0 1 "" nsv3014 2 165325649 165360931 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1547 S 9 1 0 "" NA19240 nsv520658 2 165441978 165472848 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697541 S 2026 0 1 "" dgv163e55 2 165450093 165565000 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv2751833,esv2751832 M 771 2 0 "" BEC_404,BEC_658 nsv3015 2 165534617 165567085 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10250 S 9 1 0 "" NA18956 nsv834444 2 165547798 165720222 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442374,nssv1442376,nssv1442375 M 95 3 0 "" esv32917 2 165669846 165690505 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97514,essv96848,essv94024,essv95603,essv93132,essv95356,essv97329,essv101682,essv95915,essv99055,essv92869,essv95994,essv93591,essv93361,essv99737,essv97755,essv100251,essv100537,essv100331,essv98451,essv94158 M 51 0 21 "" 21616,21659,21802,21841,21863,21872,21879,21909,21911,21938,21939,22127,22128,22170,22217,22278,22286,22298,22300,22352,22394 nsv517273 2 165684504 165693984 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv674215,nssv691538,nssv672784,nssv654179,nssv657343,nssv652933,nssv664525,nssv680241,nssv682150,nssv690656,nssv684008,nssv671091,nssv675845,nssv662965,nssv693601,nssv674659,nssv687695,nssv680745,nssv688295,nssv690760,nssv671917,nssv686181,nssv679061,nssv689855,nssv689974,nssv654322 M 2026 0 26 "" esv33963 2 165692254 165693487 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93358 S 51 1 0 "" 22170 nsv213574 2 165840201 165842251 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232152 M 24 "" nsv528928 2 165932064 165955886 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705618 S 2026 0 1 "" nsv526967 2 165935141 165935379 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703339 S 2026 0 1 "" nsv214154 2 166093031 166093353 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232732 M 24 "" nsv3016 2 166279451 166309922 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5833 S 9 1 0 "" NA19129 nsv3017 2 166355541 166378359 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6882 S 9 0 1 "" NA12156 nsv834445 2 166482404 166677169 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442377,nssv1442380,nssv1442378,nssv1442381,nssv1442379 M 95 4 1 "" nsv507045 2 166617549 166623549 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620735 S 4 1 0 "" NA15510 dgv63n17 2 166711395 166712790 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437300,nsv437301 M 60 0 2 "" NA18500,NA19173 nsv459936 2 166745937 166762919 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536584 S 1557 0 1 "" NINDS_99 nsv459937 2 166852676 166898197 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536585 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00251 nsv834448 2 166985384 167173893 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442382 S 95 0 1 "" nsv507046 2 166990769 166996769 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621672,nssv622827 M 4 2 0 "" NA10860,NA18994 nsv508176 2 167179892 167215795 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620194,nssv622440,nssv618698 M 4 0 3 "" NA10860,NA15510,NA18994 nsv519707 2 167204766 167212099 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697004 S 2026 0 1 "" nsv507047 2 167281157 167287157 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617573,nssv621673 M 4 2 0 "" CHM,NA10860 nsv3018 2 167305765 167337931 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1548,nssv4476 M 9 2 0 "" NA12878,NA19240 nsv508177 2 167665980 167697184 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622441 S 4 0 1 "" NA18994 nsv3019 2 167669489 167696252 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10251 S 9 0 1 "" NA18956 nsv214042 2 167883291 167883291 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232620 M 24 "" nsv213355 2 167896155 167896261 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv231933 M 24 "" nsv3020 2 167969283 168002725 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5834 S 9 1 0 "" NA19129 nsv834449 2 168165550 168337363 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442383 S 95 1 0 "" nsv528466 2 168227731 168273358 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705068 S 2026 0 1 "" nsv508118 2 168231460 168237460 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623880,nssv618556 M 4 0 2 "" CHM,NA18994 dgv1272e1 2 168314876 168465817 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv10451,esv249 M 271 0 0 "" NA18515 nsv459940 2 168377870 168453684 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536587 S 1557 1 0 "" 1782681087_A nsv507048 2 168489190 168495190 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621674 S 4 1 0 "" NA10860 nsv523543 2 168682671 168700662 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699321 S 2026 0 1 "" nsv3022 2 168883837 168915234 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10253 S 9 1 0 "" NA18956 nsv459941 2 168900479 168968542 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536588 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00520 nsv522749 2 168902294 168904041 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698384 S 2026 0 1 "" nsv515578 2 168961996 168968542 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv690073,nssv663946 M 2026 0 2 "" nsv834450 2 169016879 169207143 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442385 S 95 1 0 "" nsv459942 2 169087374 169124001 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536589 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00463 nsv516580 2 169101252 169116896 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv676109,nssv656183,nssv674027,nssv669301 M 2026 0 4 "" nsv508119 2 169123747 169129747 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618557 S 4 0 1 "" CHM dgv64n68 2 169170075 169389882 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH nsv834452,nsv834451 M 95 18 0 "" nsv215317 2 169431639 169431714 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233895 M 24 "" nsv516627 2 169540400 169546884 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv669687,nssv689871,nssv662684 M 2026 0 3 "" nsv3023 2 169541049 169564872 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2303,nssv11024,nssv10254,nssv6884,nssv1549 M 9 5 0 "" NA12156,NA15510,NA18555,NA18956,NA19240 nsv227 2 169546830 169564872 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv227 S 1 1 0 "" NA15510 nsv459943 2 169582437 169624517 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536590 S 1557 0 1 "" 1780854449_A nsv528457 2 169718926 169979181 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705059 S 2026 1 0 "" nsv3024 2 169929339 169953371 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4477 S 9 0 1 "" NA12878 nsv214965 2 169930623 169936669 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233543 M 24 "" nsv834453 2 169943901 170130311 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442405 S 95 1 0 "" nsv508178 2 170114352 170153723 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620197 S 4 0 1 "" NA15510 nsv507049 2 170145178 170151178 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622828,nssv617574 M 4 2 0 "" CHM,NA18994 nsv521651 2 170162318 170201193 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698269 S 2026 1 0 "" nsv518894 2 170162318 170289058 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696353 S 2026 1 0 "" nsv818095 2 170180297 170194305 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418438 S 112 0 1 "" NA19193 nsv3025 2 170291210 170325902 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7571 S 9 0 1 "" NA12156 nsv834454 2 170296566 170456393 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442408 S 95 0 1 "" nsv520764 2 170311679 170314277 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv687211,nssv687583,nssv677449,nssv675901,nssv677615,nssv675112 M 2026 0 6 "" nsv10201 2 170383610 170851921 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28465 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA10863 nsv3026 2 170452849 170499792 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6885 S 9 0 1 "" NA12156 nsv3027 2 170856818 170875998 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7572 S 9 0 1 "" NA12156 nsv516684 2 170906160 170907840 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv690657,nssv670140,nssv689539,nssv663077 M 2026 0 4 "" nsv433288 2 170965001 170976232 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463169 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA18956 nsv3028 2 171020258 171053158 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7573 S 9 0 1 "" NA12156 nsv525740 2 171072899 171074600 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701905 S 2026 0 1 "" nsv834455 2 171093936 171276631 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442409 S 95 1 0 "" nsv3029 2 171265590 171310248 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7574 S 9 0 1 "" NA12156 nsv528929 2 171497698 171503886 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705619 S 2026 0 1 "" nsv508179 2 171533911 171561510 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617463 S 4 0 1 "" CHM nsv523717 2 171545072 171548433 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699530 S 2026 1 0 "" nsv526140 2 171555150 171558004 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702395 S 2026 0 1 "" nsv834456 2 171699717 171840166 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442410 S 95 0 1 "" nsv3030 2 171712240 171744707 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5835 S 9 1 0 "" NA19129 nsv522291 2 171860425 171869310 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695073 S 2026 0 1 "" nsv525857 2 172249318 172249795 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702052 S 2026 0 1 "" nsv525490 2 172279207 172280440 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701621 S 2026 0 1 "" nsv511089 2 172385782 172459306 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624287 S 4 0 0 "" NA18994 nsv834457 2 172390446 172596408 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442411 S 95 0 1 "" nsv522519 2 172412074 172425817 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705889 S 2026 0 1 "" nsv442838 2 172660350 172665892 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv3031 2 172692969 172709739 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7575 S 9 0 1 "" NA12156 nsv518335 2 172798478 172800256 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695764 S 2026 0 1 "" nsv528818 2 172826565 172838880 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705492 S 2026 0 1 "" nsv3033 2 172888791 172934093 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7577 S 9 0 1 "" NA12156 nsv3034 2 172985802 173025620 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1550,nssv4478,nssv6886 M 9 0 3 "" NA12156,NA12878,NA19240 nsv528899 2 173114746 173115902 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705583 S 2026 0 1 "" nsv3035 2 173244565 173289408 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7578 S 9 0 1 "" NA12156 nsv507050 2 173385690 173391690 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620736 S 4 1 0 "" NA15510 nsv834459 2 173560699 173752257 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442412 S 95 1 0 "" nsv834460 2 173744971 173910795 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442413 S 95 1 0 "" nsv3036 2 173745738 173778122 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10255 S 9 1 0 "" NA18956 nsv834461 2 173805241 173863978 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442414 S 95 0 1 "" nsv3037 2 173880381 173913621 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4480 S 9 1 0 "" NA12878 nsv834462 2 174017812 174197033 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442415 S 95 0 1 "" nsv517299 2 174277198 174278500 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv653368,nssv654240 M 2026 0 2 "" dgv1273e1 2 174352834 174370707 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv8587,esv877 M 271 0 0 "" NA19130 nsv441795 2 174366383 174372180 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" essv8254 2 174366797 174370707 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19153 dgv231n21 2 174366797 174371575 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv528935,nsv521303 M 2026 0 2 "" nsv442839 2 174418454 174423075 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv3038 2 174536157 174581097 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7579 S 9 0 1 "" NA12156 nsv507051 2 174544197 174550197 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622829,nssv620737 M 4 2 0 "" NA15510,NA18994 nsv3039 2 174674180 174707290 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1551 S 9 1 0 "" NA19240 nsv520470 2 174733150 174736855 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697440 S 2026 0 1 "" nsv3040 2 174900590 174945459 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7580 S 9 0 1 "" NA12156 nsv526187 2 175111378 175165011 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702449 S 2026 0 1 "" nsv7333 2 175180100 175214786 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5836 S 9 0 0 "" NA19129 nsv3041 2 175246248 175266623 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7581 S 9 1 0 "" NA12156 nsv3042 2 175274834 175306347 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1553 S 9 1 0 "" NA19240 nsv215436 2 175284830 175285083 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv234014 M 24 "" nsv459948 2 175401156 175452555 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536591 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00905 nsv522997 2 175415966 175422339 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698667 S 2026 1 0 "" nsv523079 2 175415966 175422694 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698770 S 2026 0 1 "" nsv523215 2 175420421 175423108 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698936 S 2026 0 1 "" nsv3044 2 175854985 175900298 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7582 S 9 0 1 "" NA12156 nsv525290 2 176024266 176033657 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701395 S 2026 0 1 "" nsv520223 2 176030753 176033657 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv678491,nssv661982 M 2026 0 2 "" nsv834463 2 176095662 176262596 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442416 S 95 1 0 "" nsv3045 2 176142317 176167393 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9582 S 9 1 0 "" NA18507 nsv3046 2 176147859 176194494 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2304,nssv5837,nssv1554 M 9 0 3 "" NA18555,NA19129,NA19240 nsv508180 2 176163548 176170864 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617464 S 4 0 1 "" CHM nsv215398 2 176172190 176178242 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233976 M 24 "" nsv3047 2 176248691 176293407 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7583 S 9 0 1 "" NA12156 nsv515494 2 176370129 176371086 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv653307,nssv687087 M 2026 0 2 "" nsv508181 2 176467984 176505022 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617465 S 4 0 1 "" CHM nsv521343 2 176575285 176719060 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697952 S 2026 0 1 "" nsv508120 2 176664523 176670523 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623881 S 4 0 1 "" NA18994 nsv520227 2 176725597 176798589 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv686873,nssv662017,nssv678754,nssv688885 M 2026 0 4 "" nsv527187 2 176762341 176811203 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703583 S 2026 0 1 "" nsv517968 2 176762341 176838085 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695380 S 2026 0 1 "" nsv524250 2 176776433 176804903 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700142 S 2026 0 1 "" nsv523803 2 176918483 176995675 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699632 S 2026 1 0 "" nsv507052 2 176934447 176940447 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620738 S 4 1 0 "" NA15510 nsv459952 2 176995425 177081992 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536594 S 1557 0 1 "" 1780862574_A nsv3048 2 177069912 177117367 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4481,nssv2305,nssv9356,nssv10256,nssv1555 M 9 0 5 "" NA12878,NA18517,NA18555,NA18956,NA19240 nsv508183 2 177090018 177106789 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620198,nssv617466,nssv618699 M 4 0 3 "" CHM,NA10860,NA15510 dgv1274e1 2 177140714 177191106 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv8531,esv971 M 271 0 0 "" NA18523 nsv515967 2 177200694 177202375 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv655086,nssv691672,nssv692208,nssv693694,nssv665520,nssv683129,nssv691078,nssv683021,nssv680671,nssv691262 M 2026 0 10 "" nsv834464 2 177201250 177359917 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442417 S 95 1 0 "" nsv527737 2 177363773 177518079 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704221 S 2026 0 1 "" nsv524841 2 177453765 177458221 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700843 S 2026 0 1 "" nsv3049 2 177459850 177493517 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7584 S 9 1 0 "" NA12156 nsv459953 2 177529828 177546182 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536595 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01218 nsv3050 2 177538937 177586040 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2306,nssv7585 M 9 0 2 "" NA12156,NA18555 nsv525342 2 177630209 177630472 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701460 S 2026 0 1 "" nsv834465 2 177892801 177940620 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442419 S 95 0 1 "" nsv3051 2 178018943 178064901 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6887 S 9 0 1 "" NA12156 nsv213523 2 178041792 178041904 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232101 M 24 "" nsv507053 2 178159579 178165579 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617575,nssv621675,nssv620739 M 4 3 0 "" CHM,NA10860,NA15510 nsv525762 2 178320027 178322873 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701930 S 2026 0 1 "" nsv213289 2 178350348 178350404 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv231867 M 24 "" nsv528219 2 178377431 178392658 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704780 S 2026 1 0 "" nsv3052 2 178439429 178474846 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4482 S 9 1 0 "" NA12878 nsv3053 2 178516147 178560639 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4656 S 9 0 1 "" NA19129 nsv3055 2 178625945 178645145 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7586 S 9 0 1 "" NA12156 nsv215311 2 178648153 178657434 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233889 M 24 "" nsv521228 2 178670976 178682407 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv686420,nssv689856 M 2026 0 2 "" nsv213683 2 178734585 178734585 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232261 M 24 "" nsv518790 2 178788952 178825798 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696243 S 2026 1 0 "" nsv511090 2 178850976 178902503 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621663 S 4 0 0 "" NA15510 nsv3056 2 178899897 178934066 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1556 S 9 1 0 "" NA19240 nsv3057 2 178941243 178973989 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6888 S 9 1 0 "" NA12156 nsv834466 2 178966299 179110285 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442420 S 95 1 0 "" nsv834467 2 179083647 179256472 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442421 S 95 0 1 "" nsv834468 2 179176623 179359131 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442422 S 95 1 0 "" nsv522036 2 179221267 179224016 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694806 S 2026 1 0 "" dgv1275e1 2 179234579 179433748 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv4437,esv291 M 271 0 0 "" NA18552 nsv3058 2 179278601 179309359 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2308 S 9 1 0 "" NA18555 nsv10202 2 179341856 179354484 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28514,nssv11653,nssv11684 M 31 0 3 Samples from several populations that are part of the HapMap project. "" NA18504,NA18517,NA18537 nsv834470 2 179380658 179554232 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442425,nssv1442424,nssv1442423,nssv1442428,nssv1442427,nssv1442426,nssv1442430 M 95 7 0 "" nsv521818 2 179536479 179539107 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694100 S 2026 0 1 "" nsv3059 2 179555008 179586892 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1557 S 9 1 0 "" NA19240 nsv508184 2 179721890 179790925 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618700 S 4 0 1 "" NA10860 nsv508121 2 179760225 179766225 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618558,nssv621536,nssv623882 M 4 0 3 "" CHM,NA15510,NA18994 nsv834471 2 179799809 179948533 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442431 S 95 1 0 "" nsv3060 2 179816297 179861017 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7587 S 9 0 1 "" NA12156 nsv3061 2 179882700 179921224 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9583,nssv1558,nssv5838,nssv6889,nssv9357,nssv4483 M 9 0 6 "" NA12156,NA12878,NA18507,NA18517,NA19129,NA19240 nsv442840 2 179892698 179904650 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv508185 2 179896266 179911154 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617467 S 4 0 1 "" CHM nsv834472 2 179917176 180045954 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442432 S 95 0 1 "" nsv519122 2 180036558 180040816 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694308 S 2026 0 1 "" nsv520603 2 180195799 180196003 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv690044,nssv678621,nssv673028 M 2026 0 3 "" nsv523865 2 180228634 180252270 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699702 S 2026 0 1 "" nsv437591 2 180234517 180248689 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467472 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA10831 nsv10203 2 180235687 180249335 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28250,nssv27397,nssv28831,nssv11607 M 31 0 4 Samples from several populations that are part of the HapMap project. "" NA10839,NA12802,NA18853,NA19132 nsv508186 2 180239276 180248245 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618701 S 4 0 1 "" NA10860 nsv442841 2 180243717 180247643 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv213487 2 180247848 180247931 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232065 M 24 "" nsv521639 2 180265047 180268950 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698257 S 2026 0 1 "" nsv3062 2 180520073 180552982 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3039 S 9 1 0 "" NA18555 nsv521134 2 180571547 180673994 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv682806,nssv682679 M 2026 2 0 "" nsv834473 2 180689762 180856446 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442433 S 95 1 0 "" nsv834474 2 181096639 181245901 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442434 S 95 1 0 "" nsv834475 2 181362969 181550397 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442435 S 95 1 0 "" nsv213233 2 181372432 181372432 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv231811 M 24 "" nsv459954 2 181800758 181865799 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536596 S 1557 1 0 "" 1780854238_A nsv507054 2 181968447 181974447 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622830 S 4 1 0 "" NA18994 nsv834476 2 182004755 182185765 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442436 S 95 1 0 "" nsv3063 2 182095075 182148551 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7588,nssv4484 M 9 2 0 "" NA12156,NA12878 nsv834477 2 182263627 182419033 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442437 S 95 1 0 "" nsv834478 2 182480317 182668707 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442438 S 95 1 0 "" nsv834479 2 182563989 182730950 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442439 S 95 1 0 "" nsv3064 2 182848159 182881435 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2309 S 9 1 0 "" NA18555 dgv479n27 2 182996022 183029875 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv459956,nsv459955 M 1557 2 0 "" HGDP01003,HGDP01012 nsv834481 2 183015264 183165083 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442441 S 95 1 0 "" nsv516110 2 183097966 183098451 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv680969,nssv658555,nssv669116,nssv692149,nssv660056,nssv666255 M 2026 0 6 "" nsv215323 2 183141313 183141627 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233901 M 24 "" dgv1276e1 2 183263206 183660590 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv835,essv16402 M 271 0 0 "" NA19139 nsv528752 2 183292722 183296766 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705414 S 2026 0 1 "" nsv459957 2 183334843 183396555 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536599 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00819 nsv3066 2 183350949 183384004 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4485 S 9 1 0 "" NA12878 essv8969 2 183354176 183590436 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19139 esv34847 2 183362905 183612269 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6985419,essv6980874 M 771 1 0 "" NA19139 nsv10204 2 183435274 183465256 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27509 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA12802 nsv818096 2 183527094 183652524 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416918 S 112 1 0 "" NA19139 nsv10205 2 183584983 183588016 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28484 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18980 nsv213440 2 183864572 183870491 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232018 M 24 "" nsv3067 2 183904925 183945463 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4486 S 9 0 1 "" NA12878 nsv508187 2 183905771 183926045 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618702 S 4 0 1 "" NA10860 nsv522952 2 183906278 183914755 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698620 S 2026 0 1 "" dgv480n27 2 183911294 183914755 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv459959,nsv459958,nsv459960,nsv459961,nsv459963,nsv459964 M 1557 0 6 "" 1780862160_A,1782681217_A,HGDP00064,HGDP00729,HGDP01368,NINDS_168 nsv818097 2 183911294 183914755 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416134,nssv1417216,nssv1416135,nssv1415815,nssv1417205,nssv1415816 M 112 0 6 "" NA10860,NA10863,NA11993,NA12264,NA12878,NA12891 nsv517040 2 183911294 183921485 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv657637,nssv677642,nssv660230,nssv686034,nssv687379,nssv663557,nssv683004,nssv675701,nssv691941,nssv675072,nssv689242,nssv665318,nssv660992,nssv659611,nssv686777,nssv668905,nssv675872,nssv659899,nssv665649,nssv667200,nssv685226,nssv666319,nssv677897,nssv662511,nssv673565,nssv688359,nssv679521,nssv661930,nssv685815,nssv655589,nssv660651,nssv677750,nssv655001,nssv671020,nssv673751,nssv674749,nssv672734,nssv667499,nssv692629,nssv688296,nssv655630,nssv676587,nssv691353,nssv673902,nssv685644,nssv669064,nssv661609,nssv670315,nssv664484,nssv683538,nssv671523,nssv694031,nssv675060,nssv690522,nssv690955,nssv672564,nssv676864,nssv661563,nssv692686,nssv670452,nssv677594,nssv676149,nssv671003,nssv651674,nssv670390,nssv672443,nssv654377,nssv686002,nssv684009,nssv662558,nssv663853,nssv666284,nssv687560,nssv683398,nssv677963,nssv663757,nssv666031,nssv691585,nssv657141,nssv688105,nssv676808,nssv681834,nssv692315,nssv657862,nssv653309,nssv681909,nssv681800,nssv687049,nssv676608,nssv677214,nssv687841,nssv692805,nssv685458,nssv688423,nssv663023,nssv679560,nssv665688,nssv693010,nssv668354,nssv690865,nssv682231,nssv688307,nssv676906,nssv651691,nssv653665,nssv674493,nssv668425,nssv672000,nssv676199,nssv660959,nssv661858,nssv690701,nssv671490,nssv691079,nssv661983,nssv674849,nssv670270 M 2026 0 117 "" nsv442842 2 183911298 183914652 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv215031 2 183911395 183918934 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233609 M 24 "" nsv213887 2 184075488 184075830 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232465 M 24 "" nsv508188 2 184178668 184208738 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622443 S 4 0 1 "" NA18994 dgv1277e1 2 184193979 184384414 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv208,essv3563 M 271 0 0 "" NA18965 nsv507055 2 184200444 184206444 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617576,nssv620740 M 4 2 0 "" CHM,NA15510 nsv215133 2 184203130 184203195 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233711 M 24 "" nsv507056 2 184223288 184229288 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621676 S 4 1 0 "" NA10860 nsv527180 2 184381962 184407382 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703576 S 2026 0 1 "" nsv7334 2 184396430 184437435 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv11026 S 9 0 0 "" NA15510 nsv228 2 184396804 184430134 OTHER Inversion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv228 S 1 0 0 "" NA15510 nsv10207 2 184427146 184430623 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11683 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18504 dgv481n27 2 184512316 184519820 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv459965,nsv459966 M 1557 0 2 "" 1780854255_A,1782681093_A nsv517714 2 184512316 184519820 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv675934,nssv652934,nssv675902,nssv674931,nssv670936,nssv684620,nssv683130,nssv680409 M 2026 0 8 "" nsv518077 2 184519820 184538225 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695490 S 2026 0 1 "" nsv437602 2 184619906 184632031 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467483 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA12865 nsv441796 2 184620020 184627947 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv482n27 2 184622908 184626489 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv459970,nsv459972,nsv459971,nsv459969,nsv459974 M 1557 0 5 "" 1780862206_A,HGDP01164,HGDP01367,NINDS_118,NINDS_152 nsv516977 2 184622908 184626489 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv680554,nssv658172,nssv675873,nssv691942,nssv656232,nssv674050,nssv657203,nssv669726,nssv655714,nssv691018,nssv667683,nssv660625,nssv655170,nssv685351,nssv668774,nssv683022,nssv683925,nssv667878,nssv687212,nssv653541,nssv670555,nssv686137,nssv688684,nssv689608 M 2026 0 24 "" nsv818098 2 184622908 184626489 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417228,nssv1415743,nssv1415742,nssv1416221 M 112 0 4 "" NA12056,NA12264,NA12865,NA12875 nsv522576 2 184622908 184651943 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705962 S 2026 0 1 "" nsv459975 2 184689252 184726898 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536615 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01230 nsv517730 2 184763907 184779931 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv653029,nssv659015,nssv668590 M 2026 0 3 "" nsv834482 2 184765054 184892141 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442443,nssv1442442 M 95 2 0 "" nsv459976 2 184821453 184893239 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536616 S 1557 0 1 "" 1782681093_A nsv3068 2 184825885 184857278 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4487 S 9 1 0 "" NA12878 nsv520954 2 184855798 184893239 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv678477,nssv679522,nssv691752 M 2026 0 3 "" nsv459977 2 184864696 184939874 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536617 S 1557 0 1 "" NINDS_104 nsv525791 2 184864696 184939874 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701971 S 2026 0 1 "" nsv834483 2 184908259 185052934 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442444 S 95 1 0 "" nsv818099 2 184917414 184959743 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416919,nssv1416920 M 112 0 2 "" NA19137,NA19139 nsv437303 2 184917414 184970605 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467184 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19139 nsv459978 2 184925191 184932838 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536618 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00970 nsv459979 2 184925191 184958588 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536619 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00986 nsv515830 2 184925191 184959743 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv690679,nssv664918,nssv687447,nssv670046,nssv678074,nssv652186,nssv684717,nssv665478,nssv655946,nssv669379,nssv687585,nssv668677,nssv687026,nssv687869,nssv670121,nssv653782,nssv684360,nssv693060,nssv686600,nssv674474,nssv672988,nssv669658,nssv671849,nssv657098,nssv653054,nssv672076,nssv681081,nssv693666 M 2026 0 28 "" nsv438375 2 184953627 184959743 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv471175,nssv471176 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA19137,NA19139 nsv818101 2 184983880 185014078 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415818 S 112 0 1 "" NA11992 dgv232n21 2 184991978 186118841 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv522737,nsv528385 M 2026 0 2 "" nsv818102 2 185036116 185165427 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416921 S 112 0 1 "" NA19138 dgv1278e1 2 185036251 185196292 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1262,essv11060 M 271 0 0 "" NA19138 dgv64n17 2 185064954 185094470 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437304,nsv437305 M 60 0 2 "" NA18500,NA18503 nsv438376 2 185077347 185078021 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv471180,nssv471177,nssv471178,nssv471181 M 269 0 4 Samples from several populations that are part of the HapMap project. "" NA18500,NA18501,NA18503,NA18505 nsv442843 2 185082559 185090335 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" esv32531 2 185085341 185085783 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93195 S 51 1 0 "" 22170 nsv818103 2 185104593 185108052 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417833 S 112 1 0 "" NA18852 nsv523918 2 185151757 185153186 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699761 S 2026 0 1 "" nsv215165 2 185221707 185221707 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233743 M 24 "" nsv834484 2 185375512 185588234 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442446,nssv1442448,nssv1442447,nssv1442445 M 95 4 0 "" nsv3069 2 185436161 185469772 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5839 S 9 1 0 "" NA19129 nsv508189 2 185520782 185526793 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622444 S 4 0 1 "" NA18994 nsv520974 2 185567980 185973736 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697716 S 2026 0 1 "" nsv818104 2 185581588 185597251 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417132 S 112 1 0 "" NA18537 nsv517466 2 185581588 185603768 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv652096,nssv681551,nssv679022 M 2026 3 0 "" nsv508190 2 185710068 185753844 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620199 S 4 0 1 "" NA15510 nsv834485 2 185803119 185973988 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442449 S 95 1 0 "" nsv518358 2 185870133 185998569 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695785 S 2026 0 1 "" nsv508878 2 185941212 186023761 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623358 S 4 1 0 "" NA18994 nsv459982 2 186039261 186301096 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536620 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00336 nsv459983 2 186071159 186202759 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536621 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00912 dgv233n21 2 186083915 186122580 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv518379,nsv524452 M 2026 0 2 "" dgv483n27 2 186118841 186248168 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv459986,nsv459985 M 1557 0 2 "" 1782681169_A,HGDP00133 nsv3070 2 186299801 186333956 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3040 S 9 1 0 "" NA18555 esv2751838 2 186357341 186417063 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6989467,essv6984991 M 771 0 1 "" SPC_29 nsv459987 2 186615984 186685636 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536625 S 1557 0 1 "" NINDS_114 nsv214275 2 186662029 186662090 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232853 M 24 "" esv32704 2 186902574 186902691 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100644 S 51 0 1 "" 21656 nsv3071 2 187033546 187078188 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7589 S 9 0 1 "" NA12156 nsv3072 2 187082490 187116838 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1559 S 9 1 0 "" NA19240 dgv1279e1 2 187158286 187406053 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv24810,esv833 M 271 0 0 "" NA10860 nsv459988 2 187190384 187266189 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536626 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00737 dgv1280e1 2 187242105 187318248 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv21359,essv22261 M 271 0 0 "" NA10860,NA11992 nsv818105 2 187248804 187307341 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415819,nssv1415820 M 112 2 0 "" NA10860,NA11992 nsv10208 2 187262225 187268863 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11637 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19132 nsv528437 2 187604336 187733407 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705031 S 2026 1 0 "" nsv528930 2 187633836 187657510 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705620 S 2026 0 1 "" nsv834486 2 187701834 187858471 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442450,nssv1442453,nssv1442452 M 95 2 1 "" esv2751839 2 187861453 187967196 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6989899,essv6984020 M 771 0 1 "" BEC_745 nsv834487 2 188008062 188178869 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442454 S 95 1 0 "" nsv517687 2 188060184 188063840 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv672924,nssv666459,nssv652839,nssv683434,nssv670676,nssv667321,nssv670799,nssv679696 M 2026 0 8 "" nsv834488 2 188093940 188241002 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442457,nssv1442456,nssv1442455 M 95 2 1 "" nsv459989 2 188134146 188143693 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536627 S 1557 0 1 "" 1782681274_A dgv1281e1 2 188205548 188328691 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv22158,esv485 M 271 0 0 "" NA10857 nsv519231 2 188317369 188326436 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696722 S 2026 0 1 "" nsv459990 2 188432909 188509161 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536628 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00144 nsv213421 2 188478157 188480480 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv231999 M 24 "" nsv459991 2 188504479 188618744 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536629 S 1557 0 1 "" 1780854536_A nsv523293 2 188600187 188753939 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699033 S 2026 0 1 "" nsv3073 2 188652685 188658048 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7590 S 9 1 0 "" NA12156 nsv521460 2 188851483 188872406 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698070 S 2026 0 1 "" nsv524228 2 189019535 189024701 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700117 S 2026 1 0 "" nsv834489 2 189154533 189319730 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442458 S 95 1 0 "" nsv508122 2 189336855 189342855 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623883 S 4 0 1 "" NA18994 nsv437306 2 189390767 189410159 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467187 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18863 nsv10209 2 189393190 189408503 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11502,nssv11713 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18502,NA18504 nsv442844 2 189393462 189404835 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv515712 2 189394567 189395841 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv676082,nssv675090,nssv658692,nssv657990,nssv675638,nssv683595,nssv681161,nssv693104,nssv675935,nssv656143,nssv661746,nssv664505,nssv674721,nssv659199,nssv688173,nssv679082,nssv678010,nssv668272 M 2026 0 18 "" nsv215472 2 189479480 189479535 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv234050 M 24 "" nsv834490 2 189529056 189666469 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442459 S 95 1 0 "" nsv459992 2 189621778 189681449 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536630 S 1557 0 1 "" 1780862459_A nsv3074 2 189756769 189801630 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7591 S 9 0 1 "" NA12156 nsv214396 2 189784928 189784928 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232974 M 24 "" nsv507057 2 189958637 189964637 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617577,nssv620741,nssv622831,nssv621677 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv519299 2 189975711 189976646 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696775 S 2026 0 1 "" nsv3075 2 190028166 190061073 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6890 S 9 1 0 "" NA12156 nsv3078 2 190075022 190084441 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4488 S 9 1 0 "" NA12878 nsv3079 2 190110646 190141324 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv11027 S 9 1 0 "" NA15510 nsv3080 2 190487160 190532021 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7592 S 9 0 1 "" NA12156 nsv213327 2 190551995 190554889 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv231905 M 24 "" nsv526659 2 190849467 190852639 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702987 S 2026 0 1 "" nsv215297 2 191056095 191056095 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233875 M 24 "" esv33134 2 191144297 191191216 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100765,essv97139 M 51 2 0 "" 21656,22075 nsv527324 2 191249495 191253242 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703749 S 2026 0 1 "" nsv834492 2 191264370 191472127 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442460 S 95 1 0 "" nsv3081 2 191286584 191316915 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3041 S 9 1 0 "" NA18555 nsv508879 2 191296327 191313024 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623359 S 4 1 0 "" NA18994 nsv511091 2 191296327 191316637 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618640 S 4 0 0 "" CHM nsv3082 2 191317745 191378300 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv11028,nssv3042 M 9 2 0 "" NA15510,NA18555 nsv213548 2 191506301 191506395 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232126 M 24 "" nsv3083 2 191570338 191604271 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7593 S 9 1 0 "" NA12156 nsv834493 2 191636879 191799746 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442461 S 95 1 0 "" nsv3084 2 192096848 192127916 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1560 S 9 1 0 "" NA19240 nsv213895 2 192200701 192202081 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232473 M 24 "" nsv834494 2 192364208 192593896 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442463 S 95 1 0 "" nsv3085 2 192558452 192593737 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4490 S 9 1 0 "" NA12878 nsv834495 2 192705538 192873855 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442464 S 95 0 1 "" nsv437307 2 192814862 192827369 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467188 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19145 nsv459993 2 193054897 193145220 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536631 S 1557 1 0 "" 1780862381_A nsv527665 2 193285740 193465048 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704138 S 2026 0 1 "" nsv834496 2 193677593 193820638 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442465 S 95 0 1 "" nsv459994 2 193704422 193961328 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536632 S 1557 0 1 "" NINDS_206 nsv3086 2 193816923 193863368 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6891 S 9 0 1 "" NA12156 nsv834497 2 193890021 194122229 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442466 S 95 0 1 "" nsv518284 2 193981309 194731148 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695716 S 2026 1 0 "" nsv3087 2 194104072 194137609 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1561 S 9 1 0 "" NA19240 nsv834498 2 194178463 194325366 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442467 S 95 0 1 "" nsv508123 2 194304571 194310571 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623884 S 4 0 1 "" NA18994 nsv441798 2 194412662 194423878 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv508191 2 194500139 194508774 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618703 S 4 0 1 "" NA10860 nsv3089 2 194502708 194537781 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2310,nssv4491,nssv6892,nssv5840,nssv1563 M 9 0 5 "" NA12156,NA12878,NA18555,NA19129,NA19240 nsv215014 2 194515009 194524272 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233592 M 24 "" nsv508192 2 194712387 194746746 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617468 S 4 0 1 "" CHM dgv1282e1 2 194745343 194782381 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv12044,essv13213,esv1184 M 271 0 0 "" NA19116,NA19120 nsv459996 2 194753680 194804664 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536634 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01358 nsv516626 2 194796200 194804664 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv660487,nssv669644,nssv687815 M 2026 0 3 "" nsv508124 2 194864974 194870974 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618559,nssv623885,nssv621537,nssv622013 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 dgv484n27 2 195001719 195117376 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv459997,nsv459998 M 1557 0 2 "" 1798860114_A,HGDP00144 nsv516111 2 195070615 195073110 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv666256,nssv681894 M 2026 0 2 "" nsv460001 2 195073110 195126236 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536637 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00638 nsv460004 2 195073110 195191590 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536638 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01197 dgv234n21 2 195085237 195198790 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv526272,nsv521844 M 2026 2 0 "" nsv818106 2 195134654 195191590 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417589 S 112 1 0 "" NA18972 nsv441799 2 195140226 195151350 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv460011 2 195178392 195532230 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536640 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01338 nsv3090 2 195234111 195250395 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9584 S 9 1 0 "" NA18507 nsv215319 2 195237833 195238469 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233897 M 24 "" dgv485n27 2 195408942 195511260 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv460013,nsv460012 M 1557 0 2 "" 1780854293_A,HGDP00925 nsv834499 2 195462983 195622054 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442468 S 95 1 0 "" nsv517342 2 195503383 195516815 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv658556,nssv651779,nssv665013,nssv678671,nssv662884 M 2026 0 5 "" nsv834500 2 195640397 195830187 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442471,nssv1442470,nssv1442469,nssv1442474,nssv1442472,nssv1442476,nssv1442475 M 95 5 2 "" nsv214836 2 195668231 195668313 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233414 M 24 "" nsv214111 2 195668272 195668355 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232689 M 24 "" nsv527035 2 195797384 195828120 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703411 S 2026 0 1 "" nsv10210 2 195803577 195810255 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28584,nssv11667,nssv28300,nssv11631,nssv11714,nssv11532,nssv28235,nssv12383,nssv29055 M 31 0 9 Samples from several populations that are part of the HapMap project. "" NA10847,NA18502,NA18517,NA18537,NA18564,NA18853,NA18860,NA18972,NA19132 nsv517099 2 195805286 195807956 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv674878,nssv687816,nssv681529,nssv672050,nssv669645,nssv670241,nssv668633,nssv654288,nssv686497,nssv659400,nssv669476,nssv681306,nssv659535,nssv679083,nssv682404,nssv674932,nssv683650,nssv676179,nssv684932,nssv661409,nssv690403,nssv653783,nssv690890,nssv661494,nssv667500,nssv661680 M 2026 0 26 "" nsv438378 2 195806266 195807956 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv471189,nssv471193,nssv471185,nssv471182,nssv471183,nssv471187,nssv471184,nssv471192,nssv471194,nssv471188,nssv471186,nssv471191 M 269 0 12 Samples from several populations that are part of the HapMap project. "" NA18542,NA18570,NA18853,NA18854,NA18858,NA18863,NA18914,NA19098,NA19140,NA19192,NA19202,NA19207 nsv3091 2 195857873 195904056 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6893 S 9 0 1 "" NA12156 nsv3092 2 195905335 195940548 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1564 S 9 1 0 "" NA19240 nsv523822 2 195994258 195997831 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699653 S 2026 0 1 "" nsv522188 2 195996072 195997831 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694962 S 2026 0 1 "" nsv3093 2 196086031 196118142 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10257 S 9 1 0 "" NA18956 nsv215412 2 196141745 196148673 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233990 M 24 "" nsv834501 2 196298733 196468429 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442477 S 95 1 0 "" nsv515614 2 196314777 196362011 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv666345,nssv664107,nssv662080 M 2026 0 3 "" nsv834503 2 196340728 196362903 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442478 S 95 0 1 "" nsv3094 2 196387801 196432639 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7594 S 9 0 1 "" NA12156 nsv214751 2 196561934 196562212 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233329 M 24 "" nsv3095 2 197015701 197054485 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10258,nssv4492 M 9 2 0 "" NA12878,NA18956 nsv507058 2 197085171 197091171 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621678,nssv622833,nssv620742 M 4 3 0 "" NA10860,NA15510,NA18994 nsv834504 2 197093875 197243968 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442479 S 95 0 1 "" nsv3096 2 197314816 197370291 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5841,nssv3044 M 9 2 0 "" NA18555,NA19129 nsv834505 2 197627028 197799152 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442480 S 95 0 1 "" nsv526549 2 197688353 197688409 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702863 S 2026 0 1 "" nsv215425 2 197909008 197909300 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv234003 M 24 "" nsv460015 2 197974273 198058145 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536643 S 1557 1 0 "" 1780854205_A nsv3097 2 198039165 198070691 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10259 S 9 1 0 "" NA18956 nsv3098 2 198338220 198370769 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10260 S 9 1 0 "" NA18956 nsv834506 2 198413640 198571658 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442481 S 95 1 0 "" nsv516368 2 198426236 198431020 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv667794,nssv663042 M 2026 0 2 "" nsv460016 2 198457220 198538737 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536644 S 1557 1 0 "" NINDS_118 nsv507059 2 198621142 198627142 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621679,nssv617578 M 4 2 0 "" CHM,NA10860 nsv3100 2 198630370 198662841 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6894 S 9 1 0 "" NA12156 nsv834507 2 198685438 198876644 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442482,nssv1442483 M 95 2 0 "" nsv3101 2 198769594 198814891 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7595 S 9 0 1 "" NA12156 nsv834508 2 198880701 199059110 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442485 S 95 0 1 "" nsv3102 2 198961285 198995793 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3045 S 9 1 0 "" NA18555 nsv834509 2 199250710 199399263 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442486 S 95 1 0 "" nsv3103 2 199344121 199388997 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7596 S 9 0 1 "" NA12156 nsv508125 2 199584173 199590173 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623886,nssv621538,nssv618560,nssv622015 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv507060 2 199890477 199896477 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621680,nssv620743 M 4 2 0 "" NA10860,NA15510 nsv3104 2 199954731 199990064 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1565 S 9 1 0 "" NA19240 nsv441800 2 200004476 200008063 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv213912 2 200137962 200138185 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232490 M 24 "" nsv3105 2 200166025 200197733 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10261 S 9 1 0 "" NA18956 nsv834510 2 200542948 200743023 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442487,nssv1442488 M 95 0 2 "" nsv3106 2 200671738 200691514 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7597 S 9 0 1 "" NA12156 nsv508194 2 200729908 200807435 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618704 S 4 0 1 "" NA10860 nsv460018 2 200809415 200843927 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536646 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01163 nsv3107 2 200960887 201006214 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7598 S 9 0 1 "" NA12156 nsv507061 2 201017669 201023669 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621681,nssv622834,nssv620744 M 4 3 0 "" NA10860,NA15510,NA18994 nsv213509 2 201020444 201020444 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232087 M 24 "" nsv3108 2 201036563 201081239 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7599 S 9 0 1 "" NA12156 nsv517769 2 201116042 201125660 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696314,nssv684118,nssv668177,nssv690866,nssv665927,nssv678686,nssv681433,nssv685067,nssv689540,nssv675874,nssv653173,nssv684647,nssv705722,nssv690852 M 2026 1 13 "" nsv3109 2 201587099 201632715 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6895 S 9 0 1 "" NA12156 nsv507062 2 201989499 201995499 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622835 S 4 1 0 "" NA18994 nsv3111 2 202149100 202183410 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4493 S 9 1 0 "" NA12878 nsv507063 2 202218438 202224438 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621682,nssv622836,nssv620745,nssv617579 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv214937 2 202375438 202375506 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233515 M 24 "" nsv524548 2 202387077 202507735 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700499 S 2026 1 0 "" nsv834511 2 202467569 202654693 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442489 S 95 0 1 "" nsv527313 2 202524707 202557534 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703737 S 2026 0 1 "" nsv215499 2 202547155 202547475 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv234077 M 24 "" nsv525978 2 202619026 202632144 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702197 S 2026 0 1 "" nsv834512 2 202790947 202953467 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442490 S 95 0 1 "" nsv525156 2 202799866 202806527 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701228 S 2026 0 1 "" nsv3112 2 202812642 202845445 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1566 S 9 1 0 "" NA19240 nsv214163 2 202893176 202896285 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232741 M 24 "" nsv471519 2 203109001 203137590 CNV Deletion Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv547912,nssv547900 M 3 "" nsv3113 2 203109709 203147263 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9585 S 9 0 1 "" NA18507 dgv65n17 2 203116288 203141118 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437310,nsv437308,nsv437312,nsv437311,nsv437309 M 60 0 5 "" NA18503,NA19202,NA19205,NA19208,NA19221 nsv433209 2 203119293 203137503 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463090 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA18507 nsv10211 2 203120801 203139022 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12270,nssv11562,nssv11519 M 31 0 3 Samples from several populations that are part of the HapMap project. "" NA18502,NA19173,NA19221 nsv442845 2 203121281 203137707 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv517288 2 203121296 203134572 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv658878,nssv691422,nssv666785,nssv675903,nssv676217,nssv689399,nssv679084,nssv680485,nssv679590,nssv659987,nssv684648,nssv685459,nssv668047,nssv672865,nssv662928,nssv661443,nssv682062,nssv686182,nssv660306,nssv667151,nssv689799,nssv667824,nssv665628,nssv669659,nssv668178,nssv662531,nssv666395,nssv684933,nssv680773,nssv686953,nssv686204,nssv659717,nssv685559,nssv653030,nssv665415,nssv665802,nssv684996,nssv654210,nssv652625,nssv688911,nssv659200,nssv661681,nssv679643,nssv663216,nssv675936 M 2026 0 45 "" nsv438379 2 203122574 203134572 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv471199,nssv471196,nssv471209,nssv471208,nssv471205,nssv471203,nssv471206,nssv471198,nssv471207,nssv471204,nssv471200,nssv471210,nssv471195,nssv471197 M 269 0 14 Samples from several populations that are part of the HapMap project. "" NA18503,NA18505,NA18506,NA18507,NA19172,NA19173,NA19201,NA19202,NA19203,NA19205,NA19206,NA19208,NA19221,NA19223 nsv507064 2 203358433 203364433 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621683,nssv622837,nssv617580 M 4 3 0 "" CHM,NA10860,NA18994 nsv460019 2 203367256 203461111 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536647 S 1557 1 0 "" NINDS_16 nsv3114 2 203409816 203443945 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3046 S 9 1 0 "" NA18555 nsv460020 2 203432260 203533813 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536648 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00912 nsv214438 2 203670892 203677097 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233016 M 24 "" nsv213597 2 203677101 203677101 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232175 M 24 "" esv32794 2 203724278 203727556 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93869,essv100721,essv98145,essv94326,essv95499,essv92965,essv96679,essv97671,essv100518,essv94249 M 51 0 10 "" 21634,21656,21772,21808,21847,21939,22011,22278,22298,22394 nsv442846 2 203725306 203727552 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv3115 2 204005720 204047715 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4494 S 9 0 1 "" NA12878 nsv523309 2 204140900 204224841 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699049 S 2026 1 0 "" nsv523737 2 204203732 204213183 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699553 S 2026 0 1 "" nsv3116 2 204208417 204241245 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4495 S 9 1 0 "" NA12878 nsv3117 2 204241752 204276620 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1567 S 9 1 0 "" NA19240 nsv3118 2 204288005 204332901 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7600 S 9 0 1 "" NA12156 nsv3119 2 204322793 204354615 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10262 S 9 1 0 "" NA18956 esv33060 2 204661403 204662134 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101562,essv101183,essv92892 M 51 0 3 "" 21603,21618,21939 nsv508195 2 204790635 204820994 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620200 S 4 0 1 "" NA15510 nsv518928 2 204909945 204916151 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696394 S 2026 0 1 "" nsv523634 2 204947019 204947337 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699434 S 2026 1 0 "" esv34706 2 205134717 205174230 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6988259,essv6979871 M 771 0 1 "" NA18854 nsv519470 2 205161136 205162906 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696870 S 2026 0 1 "" dgv1283e1 2 205168233 205174230 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1002,essv8503 M 271 0 0 "" NA18854 nsv10212 2 205169161 205174977 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28350 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18853 nsv518872 2 205172173 205174061 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696329 S 2026 0 1 "" essv13821 2 205172173 205174230 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18853 nsv508126 2 205256285 205262285 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618561 S 4 0 1 "" CHM dgv1284e1 2 205365338 205666680 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2989,esv478 M 271 0 0 "" NA18981 nsv10213 2 205394878 205396776 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11744 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18517 nsv10214 2 205440952 205443606 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11661,nssv11697 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA18860,NA19132 nsv441801 2 205483526 205509252 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv3120 2 205521117 205538798 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5842 S 9 0 1 "" NA19129 nsv215415 2 205744667 205747143 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233993 M 24 "" nsv214430 2 205747642 205747707 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233008 M 24 "" nsv525418 2 205794726 205903113 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701542 S 2026 0 1 "" nsv3122 2 205832148 205861536 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6896 S 9 1 0 "" NA12156 nsv523965 2 205854207 205855311 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699816 S 2026 0 1 "" nsv517619 2 205941294 205950819 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv670881,nssv678755,nssv693378,nssv691673,nssv670914,nssv662714,nssv667621,nssv652534,nssv687911,nssv678095,nssv661716,nssv657344,nssv680410 M 2026 0 13 "" nsv508881 2 205997308 206065188 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619296 S 4 1 0 "" NA10860 esv2751840 2 206140177 206338427 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6984165,essv6989923,essv6989922,essv6984164,essv6984163 M 771 0 1 "" BEC_792 dgv235n21 2 206251180 206270621 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv519301,nsv520393 M 2026 0 2 "" nsv834514 2 206266208 206428673 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442491 S 95 1 0 "" nsv460021 2 206317904 206438091 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536649 S 1557 1 0 "" 1798860279_A nsv3123 2 206371774 206404799 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4496 S 9 1 0 "" NA12878 nsv526779 2 206435494 206440572 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703131 S 2026 0 1 "" nsv524370 2 206438091 206439666 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700282 S 2026 0 1 "" nsv3124 2 206508321 206546272 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7601 S 9 0 1 "" NA12156 nsv834515 2 206527551 206675282 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442493,nssv1442492 M 95 2 0 "" dgv76n6 2 206556689 206557028 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv214961,nsv213637 M 24 "" nsv3125 2 206601482 206634480 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5843 S 9 1 0 "" NA19129 nsv508196 2 206648815 206711089 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622445 S 4 0 1 "" NA18994 nsv3126 2 206908424 206941477 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7602 S 9 1 0 "" NA12156 nsv528596 2 206926192 206930806 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705222 S 2026 0 1 "" nsv834516 2 206972323 207130932 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442494 S 95 1 0 "" nsv519846 2 207073900 207079146 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697082 S 2026 0 1 "" nsv527869 2 207096304 207096460 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704368 S 2026 0 1 "" nsv525269 2 207408912 207416563 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701369 S 2026 1 0 "" nsv525894 2 207412823 207416563 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702097 S 2026 0 1 "" nsv3127 2 207541155 207586476 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7603 S 9 0 1 "" NA12156 nsv3128 2 207565258 207596781 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10263 S 9 1 0 "" NA18956 nsv3129 2 207777045 207822160 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7604 S 9 0 1 "" NA12156 nsv522777 2 207863406 207865129 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698419 S 2026 0 1 "" nsv515772 2 207864043 207865129 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv664732,nssv675563 M 2026 0 2 "" nsv519412 2 207912220 207928558 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696839 S 2026 1 0 "" nsv3130 2 208162354 208189883 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4497 S 9 0 1 "" NA12878 nsv214524 2 208166543 208166592 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233102 M 24 "" nsv508197 2 208167129 208191648 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618705 S 4 0 1 "" NA10860 nsv515619 2 208170886 208188568 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv691696,nssv676150,nssv666298,nssv651909,nssv689310,nssv668478,nssv676263,nssv693149,nssv693570,nssv671608,nssv673997,nssv672844,nssv658854,nssv674121,nssv677558,nssv661905,nssv665629,nssv690195,nssv676609,nssv690630,nssv659175,nssv669847,nssv659661,nssv666285,nssv670962,nssv655119,nssv669902,nssv678910,nssv674051,nssv668273,nssv676747,nssv679757,nssv692674,nssv651940,nssv679950,nssv693546,nssv692469,nssv685645,nssv675469,nssv663043,nssv667545,nssv691714,nssv683709,nssv692630,nssv678221,nssv683079,nssv658093,nssv684530,nssv680838,nssv688424,nssv678323,nssv653283,nssv661682,nssv686385,nssv660674,nssv697807,nssv682047,nssv662251,nssv670242,nssv656746,nssv674951,nssv654698,nssv681408,nssv686930,nssv654539,nssv688720,nssv689091,nssv692971,nssv659246,nssv684547,nssv660652,nssv656212,nssv667049,nssv673828,nssv689844,nssv674933,nssv664873,nssv658915,nssv654180,nssv671491,nssv690891,nssv682657,nssv674216,nssv690680,nssv669134,nssv653431,nssv664553,nssv657204,nssv675937,nssv689176,nssv666715,nssv656042,nssv656358,nssv681972,nssv682846,nssv665839,nssv686421,nssv680411,nssv674590,nssv654101,nssv685580,nssv672284,nssv685944,nssv655330,nssv676907,nssv667857,nssv663610,nssv690778,nssv693011,nssv669065,nssv668249,nssv680242,nssv657251,nssv693035,nssv663732,nssv676865,nssv684208,nssv689626,nssv653979,nssv663188,nssv671004,nssv664084,nssv679500,nssv688026,nssv662836,nssv658655,nssv670069,nssv654242,nssv679697,nssv662905,nssv666757,nssv677948,nssv663854,nssv655861,nssv666257,nssv679023,nssv675410,nssv670915,nssv673508,nssv685375,nssv687264,nssv673142,nssv672030,nssv656233,nssv687213,nssv668426,nssv679561,nssv675024,nssv667795,nssv662493,nssv688395,nssv665289,nssv662559,nssv679229,nssv672226,nssv660077,nssv683673,nssv672678,nssv675989,nssv687638,nssv680819,nssv676823,nssv669035,nssv669433,nssv686449,nssv674343,nssv662344,nssv670205,nssv658579,nssv659801,nssv666875,nssv692819,nssv661807,nssv689732,nssv654846,nssv667446,nssv677263,nssv672663,nssv652977,nssv657816,nssv671208,nssv693961,nssv657919,nssv678672,nssv690605,nssv652471,nssv660993,nssv685776,nssv662987,nssv657142,nssv653884,nssv687549,nssv691503,nssv662202,nssv652218,nssv655449,nssv692004,nssv668922,nssv675003,nssv681482,nssv660126,nssv670882,nssv682023,nssv659900,nssv667654,nssv655263,nssv671570,nssv672963,nssv656841,nssv661170,nssv654934,nssv658557,nssv674494,nssv682036,nssv658173,nssv689459,nssv667501,nssv683926,nssv653310,nssv687817,nssv668407,nssv680304,nssv662408,nssv665081,nssv662624,nssv667427,nssv653505,nssv684784,nssv653001,nssv679663,nssv669646,nssv662885,nssv691522,nssv660197,nssv688685,nssv656636,nssv685141,nssv656121,nssv672137,nssv665707,nssv688956,nssv656612,nssv687476,nssv691726,nssv669833,nssv669404,nssv655284,nssv672565,nssv679003,nssv680555,nssv693718,nssv658299,nssv686913,nssv660250,nssv677616,nssv664199,nssv683825,nssv683023,nssv684333,nssv691330,nssv676588,nssv658737,nssv683286,nssv682265,nssv668906,nssv686621,nssv684734,nssv657185,nssv682176,nssv676281,nssv667201,nssv656096,nssv661518,nssv672925,nssv660159,nssv683190,nssv652716,nssv653462,nssv656473,nssv677491,nssv693464,nssv680672,nssv685164,nssv684677,nssv673376,nssv685227,nssv662426,nssv693313 M 2026 0 288 "" nsv437314 2 208174764 208188568 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467195 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18854 nsv10215 2 208176093 208184985 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27619,nssv28447,nssv28860,nssv28844,nssv11592,nssv11549,nssv28576,nssv29085,nssv28783,nssv12413,nssv11828,nssv28421,nssv28399,nssv28624,nssv11691,nssv28861,nssv28671,nssv11727,nssv28524,nssv12300,nssv11743,nssv27828,nssv28881,nssv29038,nssv28199,nssv28956,nssv11804,nssv28635 M 31 28 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA11830,NA12155,NA12740,NA12802,NA12872,NA18502,NA18504,NA18517,NA18537,NA18552,NA18563,NA18564,NA18572,NA18853,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19144,NA19173,NA19221,NA19240 nsv438380 2 208178569 208183344 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv471212,nssv471211 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA18852,NA18854 nsv442847 2 208180684 208184842 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv486n27 2 208181287 208183344 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv460025,nsv460048,nsv460046,nsv460023,nsv460045,nsv460047,nsv460027,nsv460040,nsv460035,nsv460030,nsv460026,nsv460043,nsv460036,nsv460049,nsv460034,nsv460037,nsv460041,nsv460031,nsv460038,nsv460053,nsv460044,nsv460051,nsv460029,nsv460042,nsv460054,nsv460052,nsv460024 M 1557 0 27 "" 1780854264_A,1780854538_A,1780862252_A,1780862487_A,1780862519_A,1780862520_A,1780862539_A,1780862587_A,1782681095_A,1782681219_A,1798860084_A,1798860279_A,HGDP00025,HGDP00599,HGDP00628,HGDP00650,HGDP00882,HGDP00924,HGDP01280,HGDP01378,NINDS_109,NINDS_125,NINDS_200,NINDS_210,NINDS_226,NINDS_239,NINDS_69 nsv460032 2 208181296 208181715 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536659 S 1557 0 1 "" 1788485588_A nsv460033 2 208181296 208182498 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536660 S 1557 0 1 "" 1780862306_A nsv818107 2 208181296 208183344 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416137,nssv1418352,nssv1416222,nssv1417835,nssv1417969,nssv1418351,nssv1418535,nssv1416036,nssv1415822,nssv1416136,nssv1418534,nssv1417968,nssv1416138,nssv1417261,nssv1417834,nssv1418049,nssv1417239,nssv1415823,nssv1416037,nssv1418047,nssv1416223,nssv1417250,nssv1415745,nssv1415821,nssv1416035,nssv1415744,nssv1417971 M 112 0 27 "" NA07345,NA07348,NA07357,NA10830,NA10847,NA10851,NA10859,NA10860,NA10863,NA11881,NA11992,NA11993,NA12057,NA12154,NA12234,NA12239,NA12264,NA12801,NA12812,NA12813,NA12865,NA12875,NA12878,NA12891,NA12892,NA18852,NA18854 nsv3131 2 208268407 208314773 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5844 S 9 0 1 "" NA19129 dgv77n6 2 208297924 208302317 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv214634,nsv215463 M 24 "" esv33182 2 208320724 208322443 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv96748 S 51 0 1 "" 21659 nsv527870 2 208345549 208362042 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704369 S 2026 0 1 "" nsv3133 2 208444459 208508885 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1568,nssv5845 M 9 2 0 "" NA19129,NA19240 nsv3134 2 208489321 208498259 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7605 S 9 0 1 "" NA12156 nsv527843 2 208540820 208543289 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704341 S 2026 0 1 "" nsv520066 2 208542251 208543289 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv677595,nssv660398,nssv672393 M 2026 0 3 "" nsv3135 2 208720036 208752436 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10265 S 9 1 0 "" NA18956 nsv519691 2 208764372 208765529 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv684227,nssv657589,nssv685044 M 2026 0 3 "" nsv3136 2 208783330 208804810 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7606,nssv5846,nssv4498 M 9 3 0 "" NA12156,NA12878,NA19129 nsv508882 2 208783792 208813603 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623360,nssv621182,nssv619297 M 4 3 0 "" NA10860,NA15510,NA18994 nsv834517 2 208832303 208995775 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442496 S 95 0 1 "" nsv526795 2 208845687 208847131 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703149 S 2026 0 1 "" nsv516201 2 208846738 208847131 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv655554,nssv688769,nssv666786,nssv687886,nssv686874 M 2026 0 5 "" nsv508883 2 208856782 208869859 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621184 S 4 1 0 "" NA15510 nsv524826 2 208857183 208860221 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700822 S 2026 0 1 "" nsv522180 2 208877809 208887894 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694953 S 2026 0 1 "" nsv525747 2 208912841 208942259 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701914 S 2026 0 1 "" nsv3137 2 209010808 209034398 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4500 S 9 1 0 "" NA12878 nsv437315 2 209030220 209075119 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467196 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18500 nsv460055 2 209033621 209047441 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536682 S 1557 0 1 "" NINDS_162 nsv438381 2 209060879 209065248 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv471214,nssv471215 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA18500,NA18502 nsv523966 2 209060879 209065248 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699817 S 2026 0 1 "" nsv10216 2 209062655 209072900 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11622 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18502 nsv3138 2 209130752 209146877 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10266 S 9 1 0 "" NA18956 nsv213744 2 209277224 209277550 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232322 M 24 "" dgv1285e1 2 209298057 209377458 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv10610,esv1405 M 271 0 0 "" NA19211 nsv214026 2 209463484 209463534 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232604 M 24 "" nsv215483 2 209463521 209463571 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv234061 M 24 "" nsv525152 2 209484728 209501543 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701224 S 2026 1 0 "" nsv460057 2 209484728 209561515 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536683 S 1557 0 1 "" 1798860567_A dgv236n21 2 209509753 209517696 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv528386,nsv522738 M 2026 0 2 "" nsv460058 2 209580565 209691901 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536684 S 1557 0 1 "" NINDS_103 nsv526239 2 209689570 209702584 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702508 S 2026 1 0 "" nsv516581 2 209719560 209725294 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv669302,nssv684504 M 2026 0 2 "" nsv3139 2 209740824 209790225 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9587,nssv4501,nssv5847,nssv7607 M 9 0 4 "" NA12156,NA12878,NA18507,NA19129 nsv508198 2 209761283 209775592 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617469 S 4 0 1 "" CHM nsv3140 2 209837368 209871571 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7608 S 9 1 0 "" NA12156 nsv528863 2 209913586 209940402 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705543 S 2026 1 0 "" nsv460060 2 209913586 209979716 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536685 S 1557 1 0 "" 1780854441_A nsv516299 2 209958766 209968804 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv667403,nssv687887 M 2026 0 2 "" nsv834518 2 210030464 210198250 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442497 S 95 0 1 "" nsv834519 2 210096523 210225659 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442498 S 95 0 1 "" nsv214706 2 210174608 210174692 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233284 M 24 "" nsv3141 2 210267187 210299200 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2311 S 9 1 0 "" NA18555 nsv507065 2 210393565 210399565 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621684,nssv617581 M 4 2 0 "" CHM,NA10860 nsv3142 2 210485656 210530512 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7609 S 9 0 1 "" NA12156 nsv3144 2 210525514 210559548 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7610 S 9 1 0 "" NA12156 nsv3145 2 210591782 210616587 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2312 S 9 1 0 "" NA18555 nsv834520 2 210926771 211082574 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442499 S 95 0 1 "" nsv3146 2 211069048 211088615 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7611 S 9 1 0 "" NA12156 nsv3147 2 211106985 211152350 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6897 S 9 0 1 "" NA12156 nsv821631 2 211354424 211484487 CNV Loss Sebat_et_al_2004 15273396 ROMA Custom Nimblegen photoprint 85000 probe ROMA oligo array nssv1421354 S 31 0 1 "" nsv522114 2 211445077 211590568 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694887 S 2026 1 0 "" nsv3148 2 211463984 211498730 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1569 S 9 1 0 "" NA19240 nsv441802 2 211597656 211603881 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv834521 2 211744387 211883378 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442500 S 95 0 1 "" nsv214177 2 211749180 211749267 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232755 M 24 "" nsv214316 2 211749254 211749331 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232894 M 24 "" nsv460063 2 211807400 211822309 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536688 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00412 nsv460064 2 211871425 211927204 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536689 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00060 nsv834522 2 211891948 212050834 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442501 S 95 1 0 "" nsv515773 2 211904444 211904956 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv685045,nssv664733,nssv670243 M 2026 0 3 "" nsv433299 2 211982610 211986510 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463180 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA18956 nsv834523 2 211988742 212156899 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442502,nssv1442503 M 95 2 0 "" nsv213622 2 212008094 212008153 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232200 M 24 "" nsv460065 2 212070026 212102216 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536690 S 1557 0 1 "" 1780862042_A nsv818108 2 212115234 212118205 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417590 S 112 1 0 "" NA18972 nsv520702 2 212118027 212125485 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697566 S 2026 0 1 "" nsv460066 2 212132583 212154922 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536691 S 1557 0 1 "" NINDS_117 nsv460067 2 212138906 212203748 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536692 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01177 nsv528570 2 212177173 212239181 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705189 S 2026 0 1 "" nsv460068 2 212181006 212253698 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536693 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00948 nsv460069 2 212241454 212297148 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536694 S 1557 0 1 "" 1782681076_A nsv460070 2 212318270 212366883 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536695 S 1557 0 1 "" 1798860114_A nsv213952 2 212376752 212377048 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232530 M 24 "" nsv834525 2 212518696 212685862 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442504 S 95 1 0 "" nsv213755 2 212560654 212563210 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232333 M 24 "" nsv525127 2 212664552 212742264 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701195 S 2026 0 1 "" dgv487n27 2 212686347 212716907 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv460072,nsv460071 M 1557 0 2 "" HGDP00090,HGDP00952 nsv507066 2 212754532 212760532 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620746,nssv622838,nssv617582 M 4 3 0 "" CHM,NA15510,NA18994 nsv460074 2 212940151 212976736 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536699 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01238 nsv834526 2 212940407 213062652 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442505 S 95 1 0 "" nsv834527 2 212941472 213159814 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442507 S 95 0 1 "" dgv488n27 2 212946029 212990753 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv460077,nsv460076 M 1557 0 2 "" HGDP00752,HGDP01213 nsv460079 2 212962253 213035165 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536702 S 1557 0 1 "" 1780862001_A dgv489n27 2 212976736 213016895 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv460080,nsv460081,nsv460082 M 1557 0 3 "" HGDP00518,HGDP00572,HGDP01362 nsv527162 2 212981040 213017554 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703556 S 2026 0 1 "" nsv818109 2 212990343 212994696 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415881 S 112 1 0 "" NA11994 dgv490n27 2 212990343 213018166 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv460083,nsv460085,nsv460087,nsv460088 M 1557 0 4 "" HGDP00082,HGDP00125,HGDP00157,HGDP00189 dgv491n27 2 212990343 213035165 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv460086,nsv460089 M 1557 0 2 "" NINDS_10,NINDS_103 nsv519556 2 212990699 212994696 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696918 S 2026 1 0 "" nsv10218 2 213008915 213018166 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27923,nssv28616,nssv28461 M 31 0 3 Samples from several populations that are part of the HapMap project. "" NA07029,NA11830,NA12872 nsv818110 2 213009202 213016895 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417972,nssv1417973 M 112 0 2 "" NA07348,NA07357 nsv516174 2 213009202 213018166 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv683435,nssv680616,nssv680913,nssv663189,nssv652586,nssv669530,nssv683710,nssv664286,nssv664526,nssv681756,nssv668880,nssv686293,nssv664200,nssv677193,nssv660592,nssv673185,nssv678847,nssv663105,nssv657205,nssv659501,nssv691331,nssv693547,nssv669278,nssv654778,nssv685165,nssv653618,nssv685118,nssv685097,nssv668923,nssv652535,nssv667598,nssv688957,nssv684832,nssv672444,nssv670005,nssv691111,nssv683521,nssv676689,nssv676326,nssv692516,nssv652247,nssv678882,nssv684886,nssv681973,nssv673478,nssv658595,nssv686358,nssv659453,nssv684718,nssv680243,nssv656054,nssv655842,nssv669117,nssv655264,nssv669598,nssv692209,nssv653506,nssv683416,nssv655555,nssv686914,nssv655827,nssv662296,nssv653825,nssv688007,nssv658255,nssv671546,nssv653117,nssv658948,nssv655527,nssv668132,nssv653409,nssv671264,nssv673052,nssv694592,nssv691674,nssv665689,nssv676519,nssv656097,nssv665335,nssv654054,nssv681530,nssv692357,nssv660612,nssv653190,nssv667050,nssv660512,nssv683191,nssv671609,nssv683494,nssv657742,nssv688396,nssv655238,nssv656589,nssv657382,nssv656305,nssv659247,nssv679230,nssv659662,nssv659821,nssv674217,nssv659939,nssv684196,nssv667655,nssv685268,nssv666103,nssv658611,nssv666758,nssv654626,nssv692631,nssv661931,nssv676908,nssv684102,nssv653258,nssv682437,nssv684010,nssv662427,nssv668385,nssv673674,nssv662560,nssv682865,nssv655506,nssv651888,nssv683539,nssv676795,nssv677813,nssv692095,nssv671918,nssv681283,nssv681644,nssv676340,nssv691586 M 2026 0 131 "" esv33432 2 213010174 213017122 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv94377,essv95680,essv95549,essv99031,essv96080,essv96539,essv96388 M 51 0 7 "" 21808,21841,21847,21938,22007,22261,22371 nsv442848 2 213012055 213017318 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv818113 2 213012540 213016895 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417004,nssv1417003,nssv1418537,nssv1417007,nssv1418538 M 112 0 5 "" NA06994,NA07000,NA07029,NA10830,NA12154 dgv1286e1 2 213012709 213015500 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv22604,essv20737 M 271 0 0 "" NA07357,NA12154 dgv1287e1 2 213012709 213018930 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv21619,essv18876,essv20446,esv910,essv21940,essv19808,essv21468 M 271 0 0 "" NA06994,NA07000,NA07029,NA07348,NA10830,NA12864 nsv214237 2 213021289 213021289 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232815 M 24 "" nsv3149 2 213029788 213074472 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7612 S 9 0 1 "" NA12156 nsv524959 2 213294319 213298140 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700980 S 2026 0 1 "" nsv213718 2 213355974 213356110 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232296 M 24 "" nsv519804 2 213388578 213395771 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697060 S 2026 1 0 "" nsv460093 2 213388578 213435865 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536713 S 1557 1 0 "" NINDS_98 dgv78n6 2 213400178 213400498 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv213617,nsv215336 M 24 "" nsv215266 2 213453825 213453894 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233844 M 24 "" nsv520544 2 213456527 213469308 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv686138,nssv672352 M 2026 0 2 "" nsv834528 2 213489694 213704567 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442508 S 95 0 1 "" nsv3150 2 213499738 213531503 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6898 S 9 1 0 "" NA12156 nsv523532 2 213552446 213553887 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699307 S 2026 0 1 "" nsv527398 2 213572923 213573522 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703833 S 2026 0 1 "" nsv834529 2 213576474 213783900 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442509,nssv1442511,nssv1442512,nssv1442510,nssv1442513 M 95 5 0 "" nsv521474 2 213609966 213620260 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698085 S 2026 1 0 "" nsv517070 2 213678761 213697215 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv681376,nssv656007,nssv670006,nssv657843,nssv678459,nssv689092,nssv654388,nssv681082,nssv660834,nssv686839,nssv688189,nssv656783,nssv660437,nssv693745,nssv668848,nssv692709,nssv656437,nssv682882,nssv665729,nssv660127,nssv701255,nssv685599,nssv660690,nssv661277,nssv670677,nssv660994,nssv678096,nssv693636,nssv691227,nssv675311,nssv678687,nssv663893,nssv656803,nssv675091,nssv693409,nssv667599,nssv670244,nssv688450,nssv692210,nssv689975,nssv692732,nssv679541,nssv673186,nssv664950,nssv699695,nssv678511,nssv691504,nssv652510,nssv686915,nssv688638,nssv673164,nssv682807,nssv658326,nssv657252,nssv667900,nssv686622,nssv684361,nssv656336,nssv674200,nssv668955,nssv663650,nssv680149,nssv662886,nssv663577,nssv672529,nssv674778,nssv653955,nssv692061,nssv666129,nssv693782,nssv653902,nssv682133,nssv672926,nssv682602,nssv661069,nssv671492,nssv657665,nssv658015,nssv692687,nssv661323,nssv666320,nssv692470,nssv681645,nssv668493,nssv658230,nssv655120,nssv688704,nssv690001,nssv677240,nssv684694,nssv693880,nssv671625,nssv691753,nssv692806,nssv665171,nssv689177,nssv660593,nssv690658,nssv669531,nssv680970,nssv672593,nssv661386,nssv653862,nssv653369,nssv669014,nssv684756,nssv691456,nssv666969,nssv659663,nssv691382,nssv685207,nssv653728,nssv677375,nssv667946,nssv676866,nssv682658,nssv658382,nssv692124,nssv670963,nssv681217,nssv676423,nssv684103,nssv690129,nssv674750,nssv672765,nssv656474,nssv655471,nssv680431,nssv693286,nssv664034,nssv659337,nssv690367,nssv664108,nssv665867,nssv654699,nssv674122,nssv692850,nssv677732,nssv665056,nssv678534,nssv673479,nssv669968,nssv690213,nssv656637,nssv665950,nssv675365,nssv680650,nssv665928,nssv678673,nssv661760,nssv688554,nssv683262,nssv662929,nssv675114,nssv694032,nssv662950,nssv674980,nssv652098,nssv682960,nssv662817,nssv666626,nssv671524,nssv677814,nssv684833,nssv673280 M 2026 0 165 "" nsv213831 2 213680894 213690482 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232409 M 24 "" esv33156 2 213681444 213682180 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv94351,essv96135 M 51 0 2 "" 21808,22007 nsv834530 2 213763149 213931051 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442514 S 95 1 0 "" nsv3151 2 213827892 213862816 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4502 S 9 1 0 "" NA12878 nsv834531 2 213941130 214127749 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442515 S 95 0 1 "" nsv3152 2 213973156 214022922 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3047,nssv10267,nssv6899 M 9 3 0 "" NA12156,NA18555,NA18956 nsv508884 2 213989509 214003502 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623361,nssv621185,nssv619299 M 4 3 0 "" NA10860,NA15510,NA18994 nsv834532 2 214016783 214191359 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442522,nssv1442521,nssv1442519,nssv1442524,nssv1442527,nssv1442525,nssv1442526,nssv1442528,nssv1442530,nssv1442531,nssv1442533,nssv1442532,nssv1442534,nssv1442535,nssv1442520,nssv1442523,nssv1442516 M 95 17 0 "" nsv523669 2 214039803 214052091 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699471 S 2026 0 1 "" nsv520985 2 214095223 214151485 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697722 S 2026 0 1 "" nsv834533 2 214126907 214281997 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442536 S 95 1 0 "" nsv511092 2 214293670 214300294 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622356 S 4 0 0 "" NA10860 nsv527687 2 214398461 214405815 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704163 S 2026 0 1 "" nsv214963 2 214415032 214419106 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233541 M 24 "" nsv528970 2 214416091 214435958 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705669 S 2026 0 1 "" nsv213247 2 214523677 214523677 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv231825 M 24 "" nsv508127 2 214586826 214592826 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621539,nssv618562,nssv623887 M 4 0 3 "" CHM,NA15510,NA18994 nsv214436 2 214600723 214601029 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233014 M 24 "" nsv213260 2 214603837 214603902 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv231838 M 24 "" nsv3153 2 214668665 214701553 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6900 S 9 1 0 "" NA12156 nsv215392 2 214700212 214701721 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233970 M 24 "" nsv834534 2 214775000 214930522 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442537 S 95 0 1 "" nsv3155 2 214914285 214959221 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7613 S 9 0 1 "" NA12156 nsv519662 2 214925341 214935064 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv688744,nssv657456 M 2026 2 0 "" nsv508128 2 215062451 215068451 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618563,nssv623888,nssv621540 M 4 0 3 "" CHM,NA15510,NA18994 nsv3156 2 215534529 215579629 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7614 S 9 0 1 "" NA12156 nsv516144 2 215834730 215849188 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv672111,nssv680293,nssv668830,nssv666460 M 2026 0 4 "" nsv834536 2 215866853 216040695 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442539,nssv1442538,nssv1442545,nssv1442544,nssv1442543,nssv1442542,nssv1442541,nssv1442546,nssv1442547 M 95 0 9 "" nsv518469 2 215918189 215938577 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695905 S 2026 0 1 "" esv33472 2 216111137 216120858 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv96830 S 51 0 1 "" 21659 dgv1288e1 2 216116776 216276027 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv828,essv13329,essv12662 M 271 0 0 "" NA18500 esv34272 2 216143743 216236000 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6988111,essv6979148 M 771 0 1 "" NA18500 nsv10219 2 216234724 216237310 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv29068 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19240 nsv518768 2 216310088 216315588 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696218 S 2026 0 1 "" nsv460094 2 216310088 216329058 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536714 S 1557 0 1 "" 1780862437_A nsv3157 2 216342094 216361484 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7615 S 9 0 1 "" NA12156 nsv524960 2 216396986 216427206 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700981 S 2026 0 1 "" nsv525473 2 216633008 216637213 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701601 S 2026 0 1 "" nsv3158 2 216686248 216720452 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7616 S 9 1 0 "" NA12156 nsv523434 2 216787027 216794748 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699189 S 2026 0 1 "" nsv460096 2 216794748 216856834 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536716 S 1557 0 1 "" 1780854288_A nsv3159 2 216893875 216939995 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4503,nssv6901 M 9 0 2 "" NA12156,NA12878 nsv214269 2 216915450 216918017 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232847 M 24 "" nsv507067 2 216949726 216955726 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617583,nssv621685,nssv622839,nssv620747 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv834537 2 216956403 217138869 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442548 S 95 0 1 "" nsv3160 2 217018061 217062695 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7617 S 9 0 1 "" NA12156 nsv524480 2 217100957 217115021 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700418 S 2026 0 1 "" nsv3161 2 217142602 217176833 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7618 S 9 1 0 "" NA12156 nsv460098 2 217350749 217384241 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536717 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00551 nsv522718 2 217376035 217384241 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698348 S 2026 0 1 "" nsv214865 2 217456396 217456396 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233443 M 24 "" nsv460099 2 217463391 217482608 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536718 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01023 nsv3162 2 217586002 217618852 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4504 S 9 1 0 "" NA12878 nsv528708 2 217627316 217629262 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705356 S 2026 0 1 "" nsv460100 2 217647419 217690107 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536719 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00062 nsv834538 2 217725879 217940552 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442549 S 95 1 0 "" nsv834539 2 217826538 218013904 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442550 S 95 1 0 "" nsv529041 2 217854903 217898898 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705754 S 2026 1 0 "" nsv460101 2 218043124 218199572 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536720 S 1557 0 1 "" 1782681219_A nsv508129 2 218066979 218072979 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623889,nssv621541,nssv622016,nssv618564 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv523924 2 218235521 218239488 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699769 S 2026 0 1 "" nsv834540 2 218290084 218467061 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442552 S 95 1 0 "" nsv527935 2 218305736 218369398 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704443 S 2026 0 1 "" nsv460102 2 218478453 218500705 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536721 S 1557 0 1 "" 1780862226_A nsv460103 2 218514102 218540192 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536722 S 1557 0 1 "" NINDS_50 nsv834541 2 218528541 218742257 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442553 S 95 0 1 "" nsv528835 2 218540192 218545548 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705511 S 2026 0 1 "" nsv527822 2 218545548 218546177 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704317 S 2026 0 1 "" nsv521135 2 218647092 218649956 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697808 S 2026 0 1 "" nsv3163 2 218695791 218728875 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7619 S 9 1 0 "" NA12156 nsv3164 2 218846433 218877750 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv11029 S 9 1 0 "" NA15510 nsv519829 2 218976723 219093286 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697073 S 2026 0 1 "" nsv3166 2 219061993 219095411 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1570 S 9 1 0 "" NA19240 nsv508199 2 219189094 219239136 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620201 S 4 0 1 "" NA15510 nsv3167 2 219195747 219228502 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5848 S 9 1 0 "" NA19129 nsv3168 2 219226977 219272506 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6903 S 9 0 1 "" NA12156 esv33891 2 219368775 219368954 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101319,essv93020,essv101658,essv96610 M 51 0 4 "" 21805,21863,21909,22011 nsv518750 2 219441473 219494880 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696199 S 2026 0 1 "" nsv528407 2 219513102 219523509 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704999 S 2026 0 1 "" nsv834542 2 219531508 219704189 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442554 S 95 1 0 "" nsv3169 2 219636982 219668501 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7620 S 9 0 1 "" NA12156 nsv214897 2 219757295 219757578 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233475 M 24 "" nsv508200 2 219824971 219892402 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622447,nssv618706,nssv617470 M 4 0 3 "" CHM,NA10860,NA18994 nsv3170 2 219863698 219892126 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4505 S 9 0 1 "" NA12878 esv33122 2 219877744 219879620 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99518 S 51 0 1 "" 22335 esv33188 2 219879309 219884716 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101569,essv98742,essv97495,essv101141,essv93839,essv100868,essv96864,essv98247,essv94785,essv101379,essv97049,essv95581,essv95521,essv93143,essv97454,essv101767,essv92941,essv93684,essv96120,essv96582,essv97194,essv99857,essv95931,essv93443,essv99726,essv96529,essv97742,essv100120,essv100557,essv100417,essv98456,essv96249,essv94235 M 51 0 33 "" 21603,21606,21616,21618,21634,21656,21659,21772,21791,21805,21817,21841,21847,21863,21879,21909,21939,21972,22007,22011,22075,22086,22127,22128,22217,22261,22278,22286,22298,22300,22352,22371,22394 nsv834543 2 219916625 220106657 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442555 S 95 0 1 "" nsv508885 2 219921452 220023829 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619300 S 4 1 0 "" NA10860 nsv527936 2 219960713 220018901 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704444 S 2026 0 1 "" nsv834544 2 220089252 220161711 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442556,nssv1442557 M 95 0 2 "" nsv520958 2 220094980 220255708 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703284,nssv678756,nssv702977,nssv682266 M 2026 0 4 "" nsv508886 2 220120702 220181489 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619301 S 4 1 0 "" NA10860 nsv213401 2 220147121 220147188 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv231979 M 24 "" nsv834545 2 220191025 220279369 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442564,nssv1442565,nssv1442563,nssv1442567,nssv1442566,nssv1442560,nssv1442561,nssv1442558,nssv1442559 M 95 0 9 "" nsv508887 2 220197300 220301011 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619302 S 4 1 0 "" NA10860 nsv10220 2 220210455 220212803 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12473 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18972 nsv482056 2 220229174 220233992 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558417 S 1 1 0 "" KB1 nsv3171 2 220513842 220533238 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1571 S 9 1 0 "" NA19240 nsv507068 2 220625189 220631189 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617584,nssv621686,nssv620748 M 4 3 0 "" CHM,NA10860,NA15510 nsv834547 2 220641426 220808307 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442568,nssv1442569 M 95 2 0 "" nsv3172 2 220645317 220690422 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7621 S 9 0 1 "" NA12156 nsv213330 2 221043537 221049068 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv231908 M 24 "" nsv460107 2 221096633 221126277 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536724 S 1557 0 1 "" NINDS_135 nsv3173 2 221096696 221119614 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3048 S 9 1 0 "" NA18555 nsv508888 2 221103359 221116925 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623362 S 4 1 0 "" NA18994 nsv214043 2 221214035 221214035 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232621 M 24 "" nsv508130 2 221331571 221337571 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618565 S 4 0 1 "" CHM nsv834548 2 221413992 221594405 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442570,nssv1442571 M 95 2 0 "" nsv213947 2 221644215 221644279 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232525 M 24 "" nsv7335 2 221675874 221698891 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1573 S 9 0 0 "" NA19240 nsv213652 2 221815504 221822361 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232230 M 24 "" nsv507069 2 221843529 221849529 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621687 S 4 1 0 "" NA10860 nsv518895 2 221846973 221968992 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696354 S 2026 1 0 "" nsv526350 2 221892655 221897683 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702642 S 2026 0 1 "" nsv523428 2 221911313 221911836 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699183 S 2026 0 1 "" nsv215290 2 222027756 222027822 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233868 M 24 "" nsv528051 2 222054891 222059686 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704584 S 2026 0 1 "" nsv3174 2 222152576 222185801 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2313 S 9 1 0 "" NA18555 essv11476 2 222179557 222227609 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18856 dgv1289e1 2 222179557 222323689 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv551,essv17339,essv11445 M 271 0 0 "" NA18856,NA18857 nsv818114 2 222199928 222225728 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416326,nssv1416328 M 112 0 2 "" NA18856,NA18857 nsv526093 2 222251125 222253376 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702340 S 2026 0 1 "" nsv523949 2 222372788 222376478 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699796 S 2026 0 1 "" nsv3175 2 222459664 222491233 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2314 S 9 1 0 "" NA18555 nsv3177 2 222657720 222702445 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7622 S 9 0 1 "" NA12156 nsv3178 2 222718323 222763754 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6904 S 9 0 1 "" NA12156 nsv834549 2 222754432 222930577 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442575,nssv1442574,nssv1442572,nssv1442576 M 95 4 0 "" nsv517079 2 222810444 222830630 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv653746,nssv675377 M 2026 0 2 "" nsv834550 2 222873169 223045346 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442577 S 95 1 0 "" nsv516764 2 222947179 222949598 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv670678,nssv681895 M 2026 0 2 "" nsv507070 2 223010150 223016150 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620749,nssv622840,nssv617585,nssv621688 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv528185 2 223164659 223165087 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704741 S 2026 0 1 "" nsv834551 2 223297472 223466758 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442579,nssv1442578 M 95 1 1 "" nsv3179 2 223409410 223443499 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3049 S 9 1 0 "" NA18555 nsv3180 2 223444622 223490058 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6905 S 9 0 1 "" NA12156 nsv3181 2 223581366 223625008 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2315,nssv6906 M 9 0 2 "" NA12156,NA18555 nsv215259 2 223622873 223623189 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233837 M 24 "" nsv834552 2 224060697 224222668 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442580 S 95 1 0 "" nsv515594 2 224066188 224068946 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv664035,nssv685182 M 2026 0 2 "" nsv525633 2 224150473 224155350 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701786 S 2026 1 0 "" nsv834553 2 224180635 224323307 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442581 S 95 1 0 "" nsv834554 2 224317713 224504140 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442582 S 95 0 1 "" nsv3182 2 224369531 224415033 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6907 S 9 0 1 "" NA12156 nsv460108 2 224370323 224441661 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536725 S 1557 0 1 "" 1780854517_A nsv3183 2 224414129 224449128 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1574 S 9 1 0 "" NA19240 nsv834555 2 224418353 224577926 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442583 S 95 0 1 "" nsv214713 2 224437220 224437220 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233291 M 24 "" nsv214769 2 224576968 224581604 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233347 M 24 "" nsv213199 2 224709988 224716628 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv231777 M 24 "" nsv215440 2 225118460 225118526 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv234018 M 24 "" nsv215441 2 225118529 225119456 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv234019 M 24 "" nsv3184 2 225289948 225319461 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv11030 S 9 1 0 "" NA15510 nsv3185 2 225542485 225548790 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5849 S 9 0 1 "" NA19129 nsv508131 2 225637580 225643580 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618566,nssv621542,nssv623890,nssv622018 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv517969 2 225726200 225734821 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695381 S 2026 0 1 "" nsv215096 2 225865089 225865559 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233674 M 24 "" nsv526660 2 226008992 226014699 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702988 S 2026 0 1 "" nsv834556 2 226206518 226421162 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442585 S 95 0 1 "" nsv508132 2 226473936 226479936 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621543 S 4 0 1 "" NA15510 nsv834559 2 226497340 226641049 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442586,nssv1442587 M 95 0 2 "" nsv213268 2 226750448 226754670 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv231846 M 24 "" nsv522037 2 226760734 226761473 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694807 S 2026 0 1 "" nsv441803 2 226782268 226786923 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv508133 2 226822019 226828019 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621544 S 4 0 1 "" NA15510 nsv525291 2 226839567 226847541 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701396 S 2026 1 0 "" nsv214476 2 226843063 226843311 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233054 M 24 "" nsv508201 2 226975807 227000866 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617471,nssv618707 M 4 0 2 "" CHM,NA10860 nsv526127 2 226976376 227197676 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702379 S 2026 0 1 "" nsv3186 2 226982414 227012007 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10270 S 9 0 1 "" NA18956 nsv3189 2 227011663 227043856 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5850 S 9 1 0 "" NA19129 nsv441804 2 227168293 227171573 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv460109 2 227169018 227171539 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536726 S 1557 0 1 "" 1780862597_A nsv517221 2 227169018 227171539 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv690779,nssv662887,nssv673509,nssv678674,nssv654055,nssv667995,nssv676151,nssv689487,nssv679758,nssv688525,nssv654134,nssv672948,nssv689125,nssv688282,nssv652717,nssv668408,nssv692211,nssv657206,nssv683507,nssv659050,nssv656936,nssv693135,nssv682866,nssv673480,nssv658786,nssv673377,nssv673566,nssv653118,nssv687155 M 2026 0 29 "" nsv818115 2 227169018 227171539 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417974 S 112 0 1 "" NA07345 nsv524916 2 227185869 227185951 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700928 S 2026 1 0 "" nsv528198 2 227307847 227326144 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704758 S 2026 0 1 "" nsv528712 2 227384822 227387644 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705362 S 2026 0 1 "" esv33196 2 227399720 227399938 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101146,essv93914,essv96821,essv94711,essv101407,essv94459,essv93025,essv95402,essv101702,essv99044,essv92906,essv96714,essv97098,essv96025,essv99619,essv96476,essv100282,essv100510,essv94245 M 51 19 0 "" 21618,21634,21659,21791,21805,21808,21863,21872,21909,21938,21939,22011,22075,22127,22217,22261,22286,22298,22394 nsv3190 2 227456565 227501904 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6908 S 9 0 1 "" NA12156 nsv3191 2 227653740 227687344 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7623 S 9 1 0 "" NA12156 nsv526108 2 227839579 227844290 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702356 S 2026 0 1 "" nsv521800 2 227946652 227993049 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694570 S 2026 0 1 "" nsv522790 2 228066271 228070939 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698434 S 2026 0 1 "" nsv518519 2 228066271 228092613 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695960 S 2026 1 0 "" nsv515518 2 228069902 228083793 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv667177,nssv686422,nssv653432 M 2026 3 0 "" nsv818116 2 228069902 228083793 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415882,nssv1415746,nssv1418540,nssv1415748,nssv1418539,nssv1415747 M 112 6 0 "" NA10830,NA11995,NA12154,NA12865,NA12874,NA12875 nsv834560 2 228166776 228334593 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442588 S 95 0 1 "" nsv834561 2 228240613 228393504 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442589 S 95 1 0 "" nsv213271 2 228302544 228311082 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv231849 M 24 "" nsv517957 2 228349615 228349815 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695370 S 2026 0 1 "" nsv520733 2 228403314 228432861 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv674850,nssv680244 M 2026 2 0 "" nsv10221 2 228405414 228731485 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11579,nssv12330,nssv28911,nssv11721,nssv11858,nssv11803,nssv28249 M 31 0 7 Samples from several populations that are part of the HapMap project. "" NA12155,NA18504,NA18572,NA18860,NA18975,NA19173,NA19221 nsv524766 2 228432861 228437521 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700757 S 2026 0 1 "" nsv834562 2 228442732 228629465 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442590 S 95 1 0 "" nsv516162 2 228480437 228480606 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv691515,nssv667089,nssv687613,nssv666558,nssv673187,nssv675730,nssv685488,nssv693168,nssv677751 M 2026 0 9 "" nsv525491 2 228480437 228495240 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701622 S 2026 0 1 "" nsv3192 2 228575519 228607089 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv11031 S 9 1 0 "" NA15510 nsv518157 2 228578538 228580372 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695578 S 2026 0 1 "" nsv524371 2 228634201 228637803 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700283 S 2026 0 1 "" nsv10222 2 228733471 228741521 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28656 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA11830 dgv1290e1 2 228736395 228746258 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1332,essv19063 M 271 0 0 "" NA11830 nsv3193 2 228879096 228913572 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4506 S 9 1 0 "" NA12878 nsv507071 2 228914762 228920762 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620750,nssv617586,nssv622841,nssv621689 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv507072 2 228997478 229003478 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621690,nssv617587 M 4 2 0 "" CHM,NA10860 nsv507073 2 229069023 229075023 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617588,nssv620751 M 4 2 0 "" CHM,NA15510 nsv526675 2 229117148 229170257 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703007 S 2026 1 0 "" nsv460111 2 229128247 229170257 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536727 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01215 dgv492n27 2 229191688 229256846 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv460112,nsv460114,nsv460113 M 1557 0 3 "" HGDP00458,HGDP00464,HGDP00470 nsv518694 2 229230970 229256426 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696145 S 2026 0 1 "" nsv460115 2 229328124 229415978 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536731 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00654 nsv3194 2 229500776 229535457 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1575 S 9 1 0 "" NA19240 nsv834563 2 229554648 229754765 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442591 S 95 1 0 "" nsv437613 2 229581759 229588478 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467494 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA10847 esv32609 2 229584861 229589478 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97597,essv100840,essv94769,essv101402,essv95759,essv98547,essv99631,essv99447 M 51 0 8 "" 21616,21656,21791,21805,21841,22085,22217,22335 esv33709 2 229589931 229591646 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93343 S 51 1 0 "" 22170 esv33624 2 229591461 229591646 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv96905,essv92957,essv98569,essv99458 M 51 3 1 "" 21817,21939,22085,22335 nsv519567 2 229653963 229667107 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694335 S 2026 0 1 "" nsv528993 2 229667107 229674231 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705695 S 2026 0 1 "" nsv3195 2 229679525 229724045 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2316 S 9 0 1 "" NA18555 nsv3196 2 229729367 229760104 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5851 S 9 1 0 "" NA19129 nsv3197 2 229796477 229841228 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7624 S 9 0 1 "" NA12156 nsv507074 2 229845426 229851426 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621691 S 4 1 0 "" NA10860 nsv834564 2 229929371 230121641 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442599,nssv1442593,nssv1442604,nssv1442594,nssv1442601,nssv1442592,nssv1442603,nssv1442600,nssv1442607,nssv1442610,nssv1442609,nssv1442597,nssv1442602,nssv1442598,nssv1442596,nssv1442608,nssv1442605 M 95 17 0 "" nsv523394 2 229957157 230022767 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699144 S 2026 1 0 "" nsv528651 2 230022767 230033749 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705284 S 2026 1 0 "" nsv3198 2 230031998 230063057 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4507 S 9 1 0 "" NA12878 nsv520821 2 230146993 230153506 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv675766,nssv680432 M 2026 0 2 "" nsv522560 2 230180086 230188631 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705943 S 2026 0 1 "" esv2751841 2 230400999 230655099 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6985289,essv6988915,essv6987204 M 771 1 0 "" SPC_138 dgv164e55 2 230493075 230818639 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv2751842,esv2751843 M 771 2 0 "" BEC_414,BEC_714 nsv460118 2 230556902 230725270 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536733 S 1557 1 0 "" NINDS_242 nsv3200 2 230560699 230570453 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6909 S 9 1 0 "" NA12156 nsv3201 2 230665555 230711200 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6910 S 9 0 1 "" NA12156 esv32933 2 230702996 230704726 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv96918,essv94486 M 51 0 2 "" 21817,21932 nsv520444 2 230840010 230846569 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697207,nssv673998,nssv671525 M 2026 0 3 "" nsv518470 2 230843674 230852667 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695906 S 2026 0 1 "" esv2751844 2 231005000 231106000 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6987493,essv6987494,essv6984113,essv6984114,essv6984115 M 771 1 0 "" BEC_775 nsv508889 2 231022804 231036081 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621187 S 4 1 0 "" NA15510 nsv521344 2 231093430 231106791 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697953 S 2026 1 0 "" nsv214779 2 231189729 231189729 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233357 M 24 "" nsv460120 2 231240193 231258742 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536734 S 1557 1 0 "" 1780854325_A nsv528220 2 231240193 231258742 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704781 S 2026 1 0 "" nsv527319 2 231318321 231326972 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703744 S 2026 1 0 "" nsv3202 2 231378677 231396355 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4657 S 9 0 1 "" NA19129 nsv834565 2 231388177 231610881 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442611 S 95 1 0 "" nsv525474 2 231753074 231861298 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701602 S 2026 0 1 "" nsv524208 2 231767997 231861298 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700095 S 2026 1 0 "" nsv214090 2 231821682 231822005 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232668 M 24 "" nsv834566 2 231997084 232142084 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442612 S 95 0 1 "" nsv518307 2 231997473 232017810 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695739 S 2026 0 1 "" nsv214398 2 232043083 232043083 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232976 M 24 "" nsv834567 2 232063224 232250571 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442613 S 95 1 0 "" nsv3203 2 232160611 232205463 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7625 S 9 0 1 "" NA12156 nsv834568 2 232315583 232470356 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442614 S 95 0 1 "" dgv1291e1 2 232362330 232554274 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv22311,essv15296 M 271 0 0 "" NA06985,NA18862 dgv1292e1 2 232362330 232659171 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv15520,essv14723,essv823,essv15396,essv8820,essv9427,essv1858,essv18653,essv20306,essv2828,essv8304,essv10924,essv23847,essv11796,essv3466,essv14894,essv20048,essv1222,essv5059,essv20324,essv10745,essv20606,essv20772,essv544,essv20410,essv4557,essv1407,essv8728,essv22935,essv15267,essv14150,essv7395,essv6585,essv5727,essv4689,essv12511,essv873,essv24812,essv14480,essv39,essv15866,essv21760,essv11867,essv7838,essv23132,essv9997,essv6766,essv9024,essv5932,essv15787,essv21346,essv9609,essv7584,essv5198,essv3146,essv5145,essv3041,essv11656,essv23196,essv5302,essv23976,essv7154,essv4226,essv8936,essv1775,essv4063,essv23826,essv4151,essv4948,essv20894,essv13808,essv4628,essv23224,essv17643,essv20125,essv24495,essv9332,essv10653,essv13476,essv19945,essv8387,essv23866,essv24570,essv25022,essv23359,essv12403,essv18132,essv14062,essv17441,essv9781,essv11078,essv21396,essv5238,essv19165,essv15642,essv2475,essv21164,essv9710,essv21518,essv12725,essv18773,essv8431,essv17976,essv22600,essv5554,essv22765,essv3363,essv5119,essv256,essv2098,essv700,essv24153,essv20672,essv1162,essv12664,essv5515,essv16232,essv15991,essv24660,essv6834,essv13522,essv2190,essv16123,essv3743,essv23577,essv17247,essv3551,essv6972,essv22149,essv11781,essv10297,essv22198,essv397 M 271 0 0 "" NA07019,NA07022,NA07029,NA07048,NA07056,NA07345,NA07348,NA07357,NA10830,NA10839,NA10847,NA10857,NA10860,NA11829,NA11830,NA11881,NA11992,NA11993,NA12003,NA12006,NA12043,NA12044,NA12144,NA12146,NA12156,NA12234,NA12236,NA12239,NA12716,NA12740,NA12750,NA12763,NA12801,NA12802,NA12813,NA12814,NA12865,NA12873,NA12874,NA12878,NA12891,NA12892,NA18500,NA18501,NA18503,NA18504,NA18505,NA18506,NA18508,NA18516,NA18521,NA18522,NA18523,NA18524,NA18529,NA18545,NA18547,NA18550,NA18555,NA18558,NA18562,NA18563,NA18564,NA18576,NA18577,NA18579,NA18582,NA18593,NA18594,NA18603,NA18611,NA18621,NA18622,NA18623,NA18624,NA18632,NA18635,NA18637,NA18853,NA18855,NA18858,NA18861,NA18863,NA18912,NA18913,NA18914,NA18945,NA18948,NA18949,NA18951,NA18960,NA18961,NA18965,NA18971,NA18973,NA18975,NA18976,NA18981,NA18987,NA18991,NA18992,NA18995,NA18997,NA18998,NA18999,NA19000,NA19007,NA19012,NA19092,NA19094,NA19099,NA19100,NA19103,NA19131,NA19132,NA19140,NA19141,NA19153,NA19154,NA19159,NA19160,NA19161,NA19192,NA19200,NA19202,NA19203,NA19207,NA19208,NA19209,NA19211,NA19221,NA19223,NA19238 dgv1293e1 2 232362330 232831363 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv147,essv11427,essv10481 M 271 0 0 "" NA18515,NA18857 nsv3204 2 232369719 232414402 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7626 S 9 0 1 "" NA12156 nsv214289 2 232384504 232384565 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232867 M 24 "" nsv214669 2 232390842 232395324 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233247 M 24 "" essv10235 2 232485817 232659171 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19152 nsv3205 2 232490589 232528091 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2318,nssv10271,nssv6911,nssv5852 M 9 4 0 "" NA12156,NA18555,NA18956,NA19129 nsv508890 2 232491639 232556588 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623363,nssv619303,nssv621188 M 4 3 0 "" NA10860,NA15510,NA18994 nsv511094 2 232491639 232579684 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618641 S 4 0 0 "" CHM nsv3206 2 232504624 232572777 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5853,nssv5854,nssv4508 M 9 0 2 "" NA12878,NA19129 nsv10223 2 232509939 232542844 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11757,nssv28285,nssv29115,nssv28675,nssv11833,nssv29098,nssv28971,nssv28890,nssv27727,nssv28501,nssv28006,nssv28696,nssv28986,nssv28439,nssv28594,nssv28891 M 31 1 15 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10847,NA11830,NA12740,NA12802,NA12872,NA18504,NA18564,NA18853,NA18975,NA18980,NA19007,NA19132,NA19240 nsv3207 2 232532103 232557771 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10272,nssv11032,nssv1576,nssv7627 M 9 4 0 "" NA12156,NA15510,NA18956,NA19240 nsv508892 2 232579684 232630833 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623364 S 4 1 0 "" NA18994 nsv527152 2 232675308 232803719 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703543 S 2026 1 0 "" nsv3208 2 232678150 232702497 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7628 S 9 0 1 "" NA12156 nsv517411 2 232714181 232764088 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv676359,nssv688265,nssv705453,nssv664919,nssv681718,nssv688958,nssv683745,nssv670964,nssv651941,nssv677215,nssv692919,nssv657186 M 2026 12 0 "" nsv3209 2 232846671 232891750 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7629 S 9 0 1 "" NA12156 nsv213397 2 232937124 232937124 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv231975 M 24 "" nsv522450 2 232966882 233213140 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705811 S 2026 0 1 "" esv34493 2 232996992 233137956 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6979762,essv6979761,essv6986934 M 771 1 0 "" NA18622 dgv493n27 2 233030395 233128638 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv460122,nsv460123 M 1557 0 2 "" 1780862002_A,1798860047_A dgv494n27 2 233031509 233148682 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv460124,nsv460126,nsv460129,nsv460127,nsv460130 M 1557 5 0 "" 1780862431_A,1782681263_A,HGDP00799,HGDP00977,HGDP01227 dgv1294e1 2 233037366 233133441 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv947,essv4333 M 271 0 0 "" NA18622 nsv521461 2 233037366 233140813 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698071 S 2026 0 1 "" nsv438382 2 233053338 233078142 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv471216 S 269 0 1 Samples from several populations that are part of the HapMap project. "" NA18622 nsv518263 2 233065248 233135053 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695694 S 2026 0 1 "" nsv482057 2 233068853 233073102 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558418 S 1 1 0 "" KB1 nsv516736 2 233076188 233094220 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697025,nssv676552,nssv670538 M 2026 0 3 "" nsv482058 2 233097057 233100930 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558419 S 1 1 0 "" KB1 nsv518736 2 233114254 233119278 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696185 S 2026 0 1 "" nsv527789 2 233126321 233223720 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704281 S 2026 0 1 "" nsv482060 2 233146338 233150247 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558421 S 1 1 0 "" KB1 nsv516082 2 233165053 233201289 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv692005,nssv666104,nssv681835 M 2026 0 3 "" nsv3211 2 233206022 233217548 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1577 S 9 1 0 "" NA19240 nsv3212 2 233216435 233254327 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7630 S 9 0 1 "" NA12156 nsv834570 2 233464665 233630572 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442615 S 95 1 0 "" nsv460134 2 233465414 233540191 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536743 S 1557 0 1 "" 1780862466_A nsv518226 2 233615952 233619022 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695653 S 2026 0 1 "" nsv518558 2 233649621 233650415 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696001 S 2026 0 1 "" nsv520361 2 233751706 233755050 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697372 S 2026 0 1 "" nsv3213 2 233795116 233806319 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7631 S 9 1 0 "" NA12156 nsv527354 2 233875805 233900882 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703783 S 2026 1 0 "" dgv495n27 2 234024347 234070048 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv460135,nsv460136 M 1557 0 2 "" 1780862093_A,1780862415_A nsv3214 2 234166436 234198949 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7632 S 9 0 1 "" NA12156 nsv7336 2 234210648 234309054 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6913,nssv9589,nssv10273,nssv9588,nssv1579,nssv6912,nssv9360,nssv9358,nssv4510,nssv4511,nssv1578,nssv5856 M 9 0 0 "" NA12156,NA12878,NA18507,NA18517,NA18956,NA19129,NA19240 nsv511095 2 234240632 234283642 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622357,nssv621664 M 4 0 0 "" NA10860,NA15510 nsv519876 2 234248843 234275048 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697100 S 2026 0 1 "" nsv507075 2 234254186 234260186 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617589,nssv622842 M 4 2 0 "" CHM,NA18994 nsv508134 2 234262141 234268141 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623891 S 4 0 1 "" NA18994 nsv522661 2 234275048 234278945 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv706063 S 2026 0 1 "" nsv3215 2 234413123 234452276 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9361 S 9 0 1 "" NA18517 nsv433211 2 234430708 234440250 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463092 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA18517 nsv519815 2 234430860 234440623 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv660895,nssv658879,nssv671712,nssv690450 M 2026 0 4 "" nsv527330 2 234470036 234484905 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703755 S 2026 0 1 "" nsv460137 2 234483686 234490629 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536746 S 1557 0 1 "" NINDS_60 nsv3216 2 234555438 234586724 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5857 S 9 1 0 "" NA19129 nsv834571 2 234711288 234892332 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442616 S 95 1 0 "" nsv460138 2 234715559 234726043 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536747 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01416 dgv237n21 2 234715630 234726043 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv522778,nsv524821 M 2026 0 2 "" nsv437316 2 234721481 234738344 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467197 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18500 nsv517003 2 234724723 234735978 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv676218,nssv671547,nssv654476,nssv693410,nssv662018,nssv659429,nssv653600,nssv664779,nssv670245,nssv672077 M 2026 0 10 "" nsv10224 2 234741698 234744384 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv29145,nssv28634 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18564,NA18980 nsv515812 2 234774912 234776887 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv685816,nssv679318,nssv685845,nssv674833,nssv671297,nssv672813,nssv668849,nssv662148,nssv693061,nssv676056,nssv680350,nssv655306,nssv690045,nssv667575,nssv689758,nssv664853,nssv689338,nssv671474,nssv658719 M 2026 0 19 "" nsv818117 2 234774912 234776887 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416922,nssv1418256,nssv1418135,nssv1417836,nssv1418255,nssv1418439 M 112 0 6 "" NA18852,NA19093,NA19094,NA19138,NA19144,NA19192 nsv3217 2 234775823 234805896 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4512 S 9 1 0 "" NA12878 nsv508135 2 234920408 234926408 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623892,nssv618567 M 4 0 2 "" CHM,NA18994 nsv834572 2 234928304 235115842 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442618 S 95 0 1 "" nsv3218 2 234987559 235020747 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7633 S 9 1 0 "" NA12156 nsv524184 2 235087332 235089538 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700066 S 2026 0 1 "" nsv522071 2 235212724 235217440 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694843 S 2026 0 1 "" nsv507076 2 235262124 235268124 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622843,nssv620752,nssv621692 M 4 3 0 "" NA10860,NA15510,NA18994 nsv528994 2 235268991 235274499 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705696 S 2026 0 1 "" nsv3219 2 235319145 235347119 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6914 S 9 0 1 "" NA12156 nsv834573 2 235323405 235501616 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442619 S 95 0 1 "" nsv508202 2 235331993 235378077 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620202 S 4 0 1 "" NA15510 nsv527654 2 235352608 236239888 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704125 S 2026 1 0 "" nsv508203 2 235497143 235511129 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622449 S 4 0 1 "" NA18994 nsv460140 2 235681359 235732284 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536749 S 1557 0 1 "" NINDS_54 nsv3220 2 235715229 235743612 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5858 S 9 1 0 "" NA19129 nsv214423 2 235728894 235729050 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233001 M 24 "" nsv3222 2 235815428 235847180 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10274 S 9 1 0 "" NA18956 nsv518274 2 235820045 235820867 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695706 S 2026 0 1 "" nsv528400 2 235837089 235857756 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704990 S 2026 0 1 "" nsv834574 2 235874654 236027391 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442620 S 95 0 1 "" nsv518281 2 235896053 235906555 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695712 S 2026 0 1 "" nsv834575 2 236074973 236234006 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442622,nssv1442621 M 95 2 0 "" nsv213603 2 236216580 236216879 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232181 M 24 "" nsv460141 2 236276162 236307826 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536750 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00972 nsv522224 2 236580165 236843954 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695001 S 2026 1 0 "" nsv214308 2 236600930 236600930 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232886 M 24 "" esv2751845 2 236654105 236865077 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6988684,essv6983530,essv6986454 M 771 1 0 "" BEC_666 nsv524185 2 236678521 236704324 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700067 S 2026 0 1 "" esv33938 2 236734464 236985359 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99100 S 51 0 1 "" 21938 nsv526683 2 236834475 236855776 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703015 S 2026 0 1 "" nsv525913 2 236843954 236865077 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702117 S 2026 0 1 "" nsv460143 2 236885697 236954318 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536751 S 1557 0 1 "" 1780862444_A nsv214473 2 236928015 236928089 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233051 M 24 "" nsv3223 2 237131342 237176246 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7634 S 9 0 1 "" NA12156 nsv834576 2 237157210 237344853 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442623 S 95 1 0 "" nsv528791 2 237266856 237271904 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705461 S 2026 0 1 "" nsv524571 2 237269588 237271904 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700526 S 2026 0 1 "" nsv834577 2 237298981 237484601 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442624 S 95 0 1 "" nsv3224 2 237367024 237401504 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3050 S 9 1 0 "" NA18555 nsv460144 2 237442782 237502634 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536752 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01057 nsv521989 2 237490487 237496186 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694756 S 2026 0 1 "" nsv521370 2 237490487 237502634 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697979 S 2026 0 1 "" nsv524209 2 237576545 237590322 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700096 S 2026 1 0 "" nsv438383 2 237581939 237589135 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv471218,nssv471217 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA18592,NA18637 nsv460145 2 237583241 237589135 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536753 S 1557 0 1 "" NINDS_97 nsv524171 2 237585300 237590322 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700051 S 2026 1 0 "" nsv518812 2 237836897 237838584 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696265 S 2026 0 1 "" nsv3225 2 237838813 237873285 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3051 S 9 1 0 "" NA18555 nsv3226 2 238026031 238057667 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10275 S 9 1 0 "" NA18956 nsv520263 2 238093612 238095196 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv683746,nssv662252,nssv679698 M 2026 0 3 "" nsv3227 2 238123090 238156170 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1580 S 9 1 0 "" NA19240 nsv3228 2 238219279 238223375 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7635 S 9 1 0 "" NA12156 nsv515784 2 238258173 238261864 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv666437,nssv664780,nssv666396,nssv689759 M 2026 0 4 "" nsv3229 2 238264531 238309340 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7636 S 9 0 1 "" NA12156 nsv508893 2 238305459 238355734 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619304,nssv621190 M 4 2 0 "" NA10860,NA15510 nsv3230 2 238341847 238350566 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4513 S 9 1 0 "" NA12878 nsv507077 2 238344772 238350772 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617590 S 4 1 0 "" CHM nsv518573 2 238405149 238417137 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696017 S 2026 1 0 "" nsv519961 2 238413747 238417137 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv678535,nssv659687 M 2026 0 2 "" nsv519581 2 238476547 238551892 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696933 S 2026 0 1 "" nsv516443 2 238488128 238551892 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696281,nssv684695,nssv668452 M 2026 2 1 "" nsv508205 2 238580181 238660667 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622450 S 4 0 1 "" NA18994 nsv527428 2 238585478 238593312 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703867 S 2026 0 1 "" nsv214866 2 238682265 238684751 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233444 M 24 "" nsv508894 2 238767480 238867669 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619305 S 4 1 0 "" NA10860 nsv518981 2 238790203 238806180 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696448 S 2026 0 1 "" nsv517412 2 238803690 238864976 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv674475,nssv667404,nssv660057,nssv687497,nssv663733,nssv701300,nssv673436,nssv681531,nssv669751,nssv661958,nssv657253,nssv651943,nssv676932,nssv683237,nssv671443,nssv666923,nssv661539,nssv685515,nssv679126,nssv704629,nssv697026,nssv690267,nssv658327,nssv673308,nssv673847,nssv670782,nssv672180,nssv680171,nssv666649,nssv688661,nssv681465,nssv664287,nssv654760,nssv676748,nssv686811,nssv663758,nssv691482,nssv679407,nssv664006,nssv660181,nssv661297,nssv669153,nssv657046,nssv677771,nssv668850,nssv658975,nssv666825,nssv671151,nssv674565,nssv690130,nssv662409 M 2026 0 51 "" nsv433212 2 238806180 238831540 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463093 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA19129 nsv460147 2 238806180 238865077 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536754 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00546 nsv3231 2 238813674 238842181 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2319 S 9 1 0 "" NA18555 nsv3233 2 238993800 239026135 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10276 S 9 1 0 "" NA18956 nsv522171 2 239222110 239249430 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694944 S 2026 0 1 "" nsv508895 2 239386156 239471572 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623365 S 4 1 0 "" NA18994 nsv213374 2 239460020 239460020 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv231952 M 24 "" nsv526249 2 239476640 239479616 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702521 S 2026 0 1 "" nsv519991 2 239569066 239571498 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv659988,nssv673848 M 2026 0 2 "" nsv213803 2 239569696 239569752 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232381 M 24 "" nsv834578 2 239598571 239763495 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442625 S 95 0 1 "" nsv215402 2 239675420 239675471 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233980 M 24 "" nsv818118 2 239697869 239791807 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417715 S 112 1 0 "" NA18999 nsv834579 2 239697910 239888755 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442626 S 95 0 1 "" nsv508896 2 239705894 239815751 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623366,nssv619306 M 4 2 0 "" NA10860,NA18994 nsv834581 2 239730060 239791020 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442627,nssv1442631 M 95 0 2 "" nsv3234 2 239734357 239744993 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7637 S 9 1 0 "" NA12156 nsv460148 2 239750644 239781604 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536755 S 1557 0 1 "" NINDS_230 nsv214049 2 239782758 239782758 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232627 M 24 "" nsv834582 2 239838118 239973274 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442636,nssv1442635,nssv1442634,nssv1442633,nssv1442632 M 95 0 5 "" nsv508897 2 240165466 240263045 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619307 S 4 1 0 "" NA10860 nsv508898 2 240281772 240434044 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619309,nssv619308 M 4 1 0 "" NA10860 nsv525277 2 240298640 240337420 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701380 S 2026 1 0 "" dgv238n21 2 240337420 240342017 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv520395,nsv519303 M 2026 0 2 "" nsv460149 2 240342017 240399067 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536756 S 1557 0 1 "" 1780862197_A nsv834583 2 240354901 240520363 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442637 S 95 0 1 "" nsv460151 2 240363004 240406299 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536758 S 1557 0 1 "" 1780862573_A nsv527411 2 240369476 240411202 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703849 S 2026 0 1 "" nsv460152 2 240381161 240420049 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536759 S 1557 0 1 "" 1780862416_A nsv818119 2 240424448 240429017 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418353 S 112 1 0 "" NA12239 nsv834584 2 240552134 240697108 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442638 S 95 1 0 "" nsv3235 2 240585940 240619151 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7638 S 9 1 0 "" NA12156 nsv215214 2 240619587 240619658 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233792 M 24 "" nsv482061 2 240620146 240684788 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558422 S 1 1 0 "" KB1 nsv213273 2 240621648 240627386 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv231851 M 24 "" nsv525278 2 240660626 240781731 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701381 S 2026 1 0 "" nsv214120 2 240678945 240679266 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232698 M 24 "" nsv521049 2 240696317 240698529 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv680746,nssv690761 M 2026 2 0 "" nsv3236 2 240696838 240726737 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10277 S 9 1 0 "" NA18956 nsv10225 2 240700238 240702803 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28487,nssv11834 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18517,NA19144 nsv213291 2 240767918 240768317 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv231869 M 24 "" nsv3237 2 240835792 240841600 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7639 S 9 1 0 "" NA12156 nsv214075 2 240840924 240841031 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232653 M 24 "" nsv460153 2 240845609 240896408 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536760 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00971 nsv523687 2 240861186 240874416 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699493 S 2026 0 1 "" nsv3238 2 240869240 240904003 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4514 S 9 1 0 "" NA12878 nsv460154 2 240872415 240913269 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536761 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00806 nsv214307 2 240947921 240947970 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232885 M 24 "" nsv834585 2 240965974 241134587 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442640,nssv1442639 M 95 0 2 "" nsv460155 2 240981647 241011735 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536762 S 1557 0 1 "" 1780862229_A nsv508899 2 240992986 241150013 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619310 S 4 1 0 "" NA10860 nsv526860 2 241006846 241009375 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703218 S 2026 0 1 "" nsv441805 2 241033118 241041406 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv460157 2 241082659 241129446 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536763 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00974 dgv1295e1 2 241085111 241308861 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1595,esv796 M 271 0 0 "" NA18942 nsv516179 2 241089041 241128115 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv672766,nssv666650,nssv667288,nssv657498,nssv670007,nssv672594,nssv668730,nssv700694,nssv656890,nssv661540 M 2026 0 10 "" nsv460158 2 241102073 241131279 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536764 S 1557 0 1 "" NINDS_49 essv1993 2 241111015 241229702 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18942 nsv834586 2 241134588 241282032 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442643,nssv1442642 M 95 0 2 "" nsv3239 2 241136230 241170262 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3052 S 9 1 0 "" NA18555 nsv10226 2 241141812 241234456 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28711 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18942 nsv515975 2 241141970 241150039 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv680747,nssv656359,nssv685646,nssv659502,nssv663651,nssv658498,nssv665561,nssv660438,nssv681377,nssv665951 M 2026 10 0 "" nsv438384 2 241162533 241174628 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv471219 S 269 0 1 Samples from several populations that are part of the HapMap project. "" NA18942 nsv482062 2 241228094 241238131 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558423 S 1 1 0 "" KB1 nsv10227 2 241265266 241279493 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28674 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18980 nsv3240 2 241277343 241308973 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6915 S 9 1 0 "" NA12156 nsv460159 2 241289319 241313934 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536765 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00407 nsv7337 2 241302474 241391134 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2321,nssv9592,nssv6916,nssv10278,nssv1581,nssv4515,nssv2320 M 9 0 0 "" NA12156,NA12878,NA18507,NA18555,NA18956,NA19240 nsv460160 2 241303666 241313147 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536766 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00684 nsv460162 2 241321737 241454744 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536768 S 1557 1 0 "" 1780854219_A nsv519624 2 241343884 241396766 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv657207,nssv689126,nssv702547 M 2026 2 1 "" nsv460165 2 241343884 241428665 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536769 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01255 nsv527844 2 241343884 241436295 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704342 S 2026 1 0 "" nsv482063 2 241351252 241357889 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558424 S 1 1 0 "" KB1 nsv213429 2 241353239 241353425 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232007 M 24 "" nsv460166 2 241395959 241442435 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536770 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00865 nsv834587 2 241435883 241508942 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442645,nssv1442644 M 95 2 0 "" nsv526010 2 241436295 241449983 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702238 S 2026 0 1 "" nsv460167 2 241470134 241677667 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536771 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00341 nsv460168 2 241543443 241580901 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536772 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00696 nsv519993 2 241555422 241558494 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv676749,nssv691112,nssv659989 M 2026 0 3 "" nsv213970 2 241752822 241752906 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232548 M 24 "" nsv214964 2 241768339 241768420 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233542 M 24 "" nsv3241 2 241817674 241850072 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6917 S 9 1 0 "" NA12156 nsv508900 2 241837379 241904191 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621191 S 4 1 0 "" NA15510 nsv527790 2 241844279 241883349 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704282 S 2026 0 1 "" nsv524008 2 241844279 241912838 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699868 S 2026 1 0 "" nsv521716 2 241857692 241883349 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694477 S 2026 0 1 "" nsv214015 2 241866628 241866685 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232593 M 24 "" nsv3242 2 241874027 241906542 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5859 S 9 1 0 "" NA19129 nsv215143 2 241891344 241891393 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233721 M 24 "" nsv3244 2 242018789 242063692 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7640 S 9 0 1 "" NA12156 dgv1296e1 2 242139945 242221648 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv284,essv1158 M 271 0 0 "" NA18951 nsv834588 2 242157674 242273264 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442651,nssv1442647,nssv1442650,nssv1442646,nssv1442648,nssv1442649 M 95 0 6 "" nsv10229 2 242166791 242168929 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12360 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19221 dgv165e55 2 242236095 242730382 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv2751854,esv2751855,esv2751856,esv2751846,esv2751847,esv2751848,esv2751849,esv2751850,esv2751851,esv2751852,esv2751853,esv2751857,esv2751858,esv2751859 M 771 0 14 "" BEC_236,BEC_32,BEC_448,BEC_541,BEC_567,BEC_587,BEC_593,BEC_647,BEC_649,BEC_667,BEC_707,BEC_718,BEC_785,SPC_163 nsv508901 2 242276774 242383204 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619311 S 4 1 0 "" NA10860 nsv10230 2 242398886 242415248 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11864 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18517 dgv166e55 2 242415890 242730382 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv2751867,esv2751862,esv34851,esv2751860,esv2751861,esv2751863,esv2751864,esv2751865,esv2751866,esv2751868,esv2751869,esv2751870 M 771 0 12 "" BEC_24,BEC_289,BEC_355,BEC_418,BEC_513,BEC_527,BEC_580,BEC_715,NA12760,SPC_100,SPC_194,SPC_2 dgv1297e1 2 242415890 242787722 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv724,essv23727 M 271 0 0 "" NA12813 nsv10231 2 242430091 242432935 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv29016,nssv28571,nssv28950,nssv11894 M 31 0 4 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA12740,NA18517 esv33634 2 242430590 242431347 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101456,essv99341 M 51 0 2 "" 21603,22275 nsv515630 2 242437736 242759899 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv666496,nssv669712,nssv681194,nssv687975,nssv667502,nssv657077,nssv662794,nssv677815,nssv687050,nssv688297,nssv685166,nssv703175,nssv685796,nssv652099,nssv668079,nssv687363,nssv678347,nssv705506,nssv656891,nssv673675,nssv675366,nssv658720,nssv653311,nssv659802,nssv652397,nssv657110,nssv701906,nssv661278,nssv690956,nssv677054,nssv673403,nssv665730,nssv674052,nssv689976,nssv685068,nssv693465,nssv660334,nssv660105,nssv659917,nssv673510,nssv688153,nssv692596,nssv673344,nssv687523,nssv680451,nssv670437,nssv654902,nssv680971,nssv666032,nssv691523,nssv664920,nssv661761,nssv679255,nssv665562,nssv665272,nssv674934,nssv658050,nssv692650,nssv678394,nssv659779,nssv687133,nssv688721,nssv659940,nssv655214,nssv655631,nssv664506,nssv652399,nssv673637,nssv666616,nssv660017,nssv653677,nssv667963,nssv687912,nssv692316,nssv678989,nssv686312,nssv653086,nssv670587,nssv676779,nssv688862,nssv690968,nssv679115,nssv653433,nssv678436,nssv662748,nssv683927,nssv690131,nssv687550,nssv681695,nssv651920,nssv680651,nssv691332,nssv679951,nssv684130,nssv658656,nssv653784,nssv675832,nssv678697,nssv654862,nssv685400,nssv659718,nssv678052,nssv682294 M 2026 1 102 "" nsv10232 2 242455466 242507785 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11652,nssv28980,nssv11888,nssv12390,nssv28951,nssv28505 M 31 4 2 Samples from several populations that are part of the HapMap project. "" NA07048,NA10839,NA10863,NA12155,NA18502,NA19221 dgv1298e1 2 242619209 242787722 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv22910,essv6867,essv19943,essv21723,essv6380 M 271 0 0 "" NA12248,NA12760,NA12813,NA18572,NA18605 nsv460171 2 242633058 242669618 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536773 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00855 dgv496n27 2 242633058 242692632 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv460175,nsv460259,nsv460174 M 1557 0 3 "" 1780854340_A,HGDP00035,NINDS_53 dgv497n27 2 242633058 242721029 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv460181,nsv460179,nsv460252,nsv460182,nsv460185,nsv460176,nsv460180,nsv460262,nsv460178,nsv460177,nsv460260,nsv460183 M 1557 0 12 "" 1780854384_A,1780854401_A,1788485589_A,HGDP00062,HGDP00351,HGDP00372,HGDP00575,HGDP00619,HGDP00645,HGDP00730,HGDP00732,NINDS_179 nsv818120 2 242633058 242723120 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415622,nssv1416038 M 112 0 2 "" NA12248,NA12813 dgv498n27 2 242633058 242759899 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv460222,nsv460218,nsv460189,nsv460237,nsv460282,nsv460194,nsv460288,nsv460271,nsv460236,nsv460205,nsv460220,nsv460223,nsv460229,nsv460216,nsv460231,nsv460247,nsv460193,nsv460209,nsv460196,nsv460224,nsv460202,nsv460227,nsv460201,nsv460207,nsv460215,nsv460204,nsv460286,nsv460246,nsv460212,nsv460190,nsv460214,nsv460234,nsv460275,nsv460199,nsv460203,nsv460191,nsv460187,nsv460245,nsv460244,nsv460219,nsv460211,nsv460257,nsv460264,nsv460213,nsv460255,nsv460249,nsv460188,nsv460287,nsv460208,nsv460256,nsv460192,nsv460226,nsv460240,nsv460266,nsv460248,nsv460200,nsv460232,nsv460230,nsv460197,nsv460281,nsv460254,nsv460235,nsv460253,nsv460269,nsv460273,nsv460270,nsv460263,nsv460233,nsv460241,nsv460198,nsv460280,nsv460267,nsv460238,nsv460265,nsv460225,nsv460221,nsv460278,nsv460186,nsv460285,nsv460210,nsv460242,nsv460268,nsv460279,nsv460243 M 1557 0 84 "" 1780854184_A,1780854238_A,1780854253_A,1780854463_A,1780854480_A,1780854489_A,1780854496_A,1780854511_A,1780854524_A,1780854530_A,1780854532_A,1780854576_A,1780854585_A,1780862002_A,1780862021_A,1780862041_A,1780862094_A,1780862108_A,1780862123_A,1780862161_A,1780862311_A,1780862480_A,1780862516_A,1780862528_A,1780862539_A,1780862595_A,1782681096_A,HGDP00017,HGDP00027,HGDP00037,HGDP00057,HGDP00134,HGDP00135,HGDP00137,HGDP00139,HGDP00148,HGDP00155,HGDP00208,HGDP00290,HGDP00307,HGDP00336,HGDP00371,HGDP00388,HGDP00392,HGDP00402,HGDP00407,HGDP00428,HGDP00474,HGDP00559,HGDP00580,HGDP00628,HGDP00676,HGDP00677,HGDP00678,HGDP00685,HGDP00724,HGDP00733,HGDP00879,HGDP00884,HGDP00892,HGDP00896,HGDP01171,HGDP01403,NINDS_10,NINDS_106,NINDS_111,NINDS_116,NINDS_158,NINDS_172,NINDS_173,NINDS_178,NINDS_19,NINDS_214,NINDS_221,NINDS_237,NINDS_243,NINDS_255,NINDS_256,NINDS_266,NINDS_35,NINDS_41,NINDS_44,NINDS_45,NINDS_54 esv33229 2 242633541 242754053 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97523,essv94834,essv97920,essv95346,essv99897,essv96001,essv93533,essv96564 M 51 1 7 "" 21616,21791,21837,21872,22086,22127,22128,22261 nsv469780 2 242633816 242787713 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649801 M 265 0 0 Samples from several populations that are part of the HapMap project. "" nsv471619 2 242633817 242787713 CNV Loss Sharp et al 2005 15918152 BAC_aCGH,FISH Eichler Segmental Duplication BAC array nssv550531,nssv550530,nssv550532 M 48 0 3 "" NA10495,NA15726,NA15730 nsv10233 2 242633903 242664877 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28736,nssv29128,nssv29010,nssv28299,nssv28575 M 31 4 1 Samples from several populations that are part of the HapMap project. "" NA07048,NA10863,NA11830,NA18572,NA19240 esv34605 2 242634000 242730000 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6979568,essv6979567,essv6986891 M 771 1 0 "" NA18572 dgv167e55 2 242634000 242730382 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv2751875,esv2751877,esv34822,esv2751872,esv35117,esv2751871,esv2751873,esv2751874,esv2751876,esv2751878,esv2751879,esv2751880,esv2751881,esv2751882,esv2751883,esv2751884,esv2751885,esv2751886 M 771 0 18 "" BEC_148,BEC_175,BEC_343,BEC_416,BEC_522,BEC_605,BEC_665,BEC_719,BEC_755,BEC_91,NA12248,NA12813,SPC_133,SPC_157,SPC_195,SPC_39,SPC_42,SPC_66 nsv460258 2 242635516 242661061 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536859 S 1557 0 1 "" 1798860587_A dgv1299e1 2 242642787 242730382 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv6518,essv18810,essv17414 M 271 0 0 "" NA12248,NA12760,NA18572 nsv213662 2 242643467 242643520 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv232240 M 24 "" dgv499n27 2 242648661 242759899 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv460274,nsv460289 M 1557 2 0 "" HGDP00234,HGDP00237 dgv500n27 2 242650330 242661061 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv460276,nsv460277 M 1557 0 2 "" HGDP00687,HGDP01071 nsv3245 2 242662435 242687366 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6918,nssv11033,nssv3054,nssv5860 M 9 4 0 "" NA12156,NA15510,NA18555,NA19129 nsv3246 2 242663060 242692029 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2322 S 9 0 1 "" NA18555 nsv229 2 242664243 242677784 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv229 S 1 1 0 "" NA15510 nsv10234 2 242664284 242669327 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv29040,nssv29001,nssv28527,nssv28479,nssv27827,nssv28774,nssv29158,nssv29046,nssv28813,nssv11924,nssv29175,nssv28349,nssv11863,nssv28751,nssv28981,nssv28615,nssv11751,nssv28714,nssv11682,nssv28874,nssv28715,nssv12420,nssv28335,nssv28091,nssv12503,nssv28664 M 31 26 0 Samples from several populations that are part of the HapMap project. "" NA07048,NA10839,NA10847,NA10863,NA11830,NA12740,NA12802,NA12872,NA18502,NA18504,NA18517,NA18537,NA18552,NA18563,NA18564,NA18572,NA18853,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19144,NA19221,NA19240 nsv214845 2 242665308 242665517 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv233423 M 24 "" nsv10235 2 242668532 242777767 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28843,nssv29076,nssv28597,nssv28398 M 31 3 1 Samples from several populations that are part of the HapMap project. "" NA12740,NA18552,NA18572,NA19144 nsv441806 2 242736862 242750267 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv438385 2 242742247 242763015 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv471220 S 269 0 1 Samples from several populations that are part of the HapMap project. "" NA18605 dgv1300e1 20 8001 11943 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv23850,esv226 M 271 0 0 "" NA07022 esv2751910 20 17408 161523 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6987905,essv6981069,essv6981068 M 771 0 1 "" BEC_348 dgv65n68 20 37210 226388 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH nsv833889,nsv833890 M 95 0 3 "" nsv469544 20 37210 226388 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649654 M 265 0 4 Samples from several populations that are part of the HapMap project. "" nsv520277 20 48505 73121 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv662326,nssv693467 M 2026 0 2 "" nsv527749 20 48505 87456 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704235 S 2026 0 1 "" nsv510776 20 53516 119026 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620160 S 4 0 1 "" NA15510 nsv179018 20 77862 77862 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197596 M 24 "" nsv510478 20 89562 95562 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618450 S 4 0 1 "" CHM nsv179938 20 126747 130573 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198516 M 24 "" nsv458837 20 136107 175967 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535719 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00740 nsv3248 20 180658 209713 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7641 S 9 1 0 "" NA12156 esv33186 20 203239 203844 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv95628 S 51 0 1 "" 21841 esv32859 20 205041 205213 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98724,essv100798 M 51 2 0 "" 21606,21656 nsv179732 20 264936 264986 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198310 M 24 "" nsv458838 20 277842 301085 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535720 S 1557 0 1 "" 1780854479_A nsv458839 20 292079 312747 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535721 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00865 nsv510777 20 295493 345348 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617440 S 4 0 1 "" CHM nsv458841 20 308789 350710 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535723 S 1557 0 1 "" 1780862399_A nsv458842 20 308789 373434 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535724 S 1557 0 1 "" 1780862101_A nsv519415 20 318150 325226 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv683712,nssv678945,nssv656098,nssv674779 M 2026 0 4 "" nsv510479 20 357706 363706 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622310 S 4 0 1 "" NA10860 nsv9774 20 366139 369960 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27088 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19240 nsv469833 20 376495 543442 CNV Gain Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649854 M 265 8 0 Samples from several populations that are part of the HapMap project. "" nsv833891 20 396892 548706 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454890,nssv1454892,nssv1454891 M 95 2 1 "" dgv239n21 20 478812 484429 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv524791,nsv525394 M 2026 0 2 "" nsv3249 20 479488 513024 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3055 S 9 1 0 "" NA18555 nsv458844 20 527657 542780 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535725 S 1557 0 1 "" 1780862574_A nsv458845 20 531587 553937 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535726 S 1557 0 1 "" NINDS_23 nsv458846 20 539694 558661 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535727 S 1557 0 1 "" 1780862306_A nsv179474 20 542434 542487 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198052 M 24 "" nsv522812 20 573267 578970 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698458 S 2026 0 1 "" nsv180505 20 573906 575159 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv199083 M 24 "" nsv510480 20 623767 629767 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618451,nssv622311,nssv624239 M 4 0 3 "" CHM,NA10860,NA18994 nsv438305 20 634314 638325 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470748,nssv470749 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA19153,NA19154 nsv516278 20 691827 693963 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv691987,nssv699836,nssv676870,nssv667292 M 2026 0 4 "" nsv180492 20 749160 755915 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv199070 M 24 "" nsv510778 20 772135 834615 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620161 S 4 0 1 "" NA15510 nsv458848 20 802681 823368 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535728 S 1557 0 1 "" NINDS_64 nsv817879 20 840948 845614 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417702 S 112 1 0 "" NA18999 nsv817880 20 874397 876425 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418419,nssv1418418 M 112 0 2 "" NA10847,NA12239 nsv520121 20 907339 947784 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697233 S 2026 0 1 "" nsv525407 20 921669 922438 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701531 S 2026 0 1 "" nsv524795 20 943832 947784 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700787 S 2026 0 1 "" nsv3250 20 981233 1014560 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7642 S 9 1 0 "" NA12156 nsv180313 20 990602 990680 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198891 M 24 "" nsv179964 20 1043640 1044024 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198542 M 24 "" nsv179100 20 1043871 1044024 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197678 M 24 "" nsv3251 20 1098054 1130516 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6919 S 9 1 0 "" NA12156 nsv517438 20 1107472 1109063 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv652018,nssv681802,nssv667252,nssv681646,nssv656010 M 2026 0 5 "" nsv516776 20 1143784 1181893 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv678990,nssv670757 M 2026 0 2 "" nsv518957 20 1143784 1198463 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696424 S 2026 1 0 "" nsv518295 20 1241046 1241247 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695726 S 2026 0 1 "" nsv522008 20 1288390 1586578 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694777 S 2026 1 0 "" nsv179420 20 1331909 1331909 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197998 M 24 "" nsv179088 20 1337144 1338814 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197666 M 24 "" nsv833893 20 1362615 1475779 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454893 S 95 0 1 "" nsv3252 20 1375403 1407962 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6921 S 9 1 0 "" NA12156 dgv1301e1 20 1424781 1540258 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv294,essv3034,essv24241,essv14571,essv2101,essv20269,essv10769,essv22207,essv10588,essv15258,essv12531,essv4811,essv12182,essv14289,essv22975,essv7173,essv18665,essv8210,essv13670,essv12857,essv10033,essv11249,essv15058,essv9220,essv1603,essv18375,essv16095,essv8863,essv16956,essv11665,essv6147,essv14595,essv21001,essv9908,essv17560,essv4223,essv20380,essv11514,essv11111,essv21188,essv19395,essv6703,essv20035,essv6769,essv1364,essv17830,essv13457,essv10640,essv15900,essv19264,essv17329,essv19915,essv13016,essv16534,essv23194,essv17205,essv15334,essv2597,essv21865,essv21112,essv15570,essv10428,essv15648,essv22312,essv9659,essv17958,essv10145,essv13636,essv24709,essv16033,essv8146,essv1170,essv2893,essv16912,essv16663,essv6623,essv128 M 271 0 0 "" NA06985,NA06991,NA07048,NA07357,NA10830,NA10831,NA10838,NA10856,NA11829,NA11830,NA11839,NA11840,NA12003,NA12044,NA12144,NA12156,NA12234,NA12249,NA12762,NA12813,NA12815,NA18501,NA18508,NA18523,NA18532,NA18547,NA18562,NA18603,NA18608,NA18620,NA18621,NA18855,NA18856,NA18859,NA18862,NA18912,NA18913,NA18942,NA18949,NA18951,NA18953,NA18968,NA18978,NA18981,NA18990,NA19007,NA19093,NA19094,NA19098,NA19099,NA19100,NA19101,NA19116,NA19119,NA19120,NA19127,NA19128,NA19129,NA19130,NA19137,NA19142,NA19144,NA19145,NA19154,NA19171,NA19173,NA19192,NA19194,NA19202,NA19204,NA19205,NA19206,NA19210,NA19211,NA19222,NA19223,NA19240 dgv1302e1 20 1424781 1627256 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv149,essv19509 M 271 0 0 "" NA12864 nsv510779 20 1457330 1561962 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619005,nssv622795,nssv620162,nssv617441 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv833894 20 1467433 1701366 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454895,nssv1454894 M 95 2 0 "" nsv9775 20 1482985 1511660 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26414,nssv27652,nssv24969,nssv25887,nssv24702,nssv24514 M 31 0 6 Samples from several populations that are part of the HapMap project. "" NA07048,NA10863,NA18517,NA18537,NA18552,NA19144 esv33848 20 1493701 1499063 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99391 S 51 0 1 "" 22335 nsv437183 20 1494450 1517563 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467064 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA10863 nsv3253 20 1495092 1551832 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6922,nssv2323,nssv11034,nssv1583,nssv9593,nssv10279,nssv5861,nssv9362,nssv4516 M 9 0 9 "" NA12156,NA12878,NA15510,NA18507,NA18517,NA18555,NA18956,NA19129,NA19240 nsv184 20 1499392 1547647 CNV Loss Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv184 S 1 0 1 "" NA15510 nsv442775 20 1505219 1508562 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" esv33285 20 1507964 1532455 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101533,essv98807,essv93791,essv96785,essv101007,essv98205,essv94694,essv93972,essv101368,essv94450,essv97896,essv95653,essv97402,essv101675,essv95802,essv94643,essv92955,essv92720,essv93720,essv96172,essv97105,essv98626,essv95986,essv93247,essv94958,essv92666,essv98054,essv97657,essv100347,essv99550,essv96310 M 51 1 30 "" 21603,21606,21634,21659,21693,21772,21791,21802,21805,21808,21837,21841,21879,21909,21911,21932,21939,21944,21972,22007,22075,22085,22127,22170,22231,22233,22259,22278,22300,22335,22371 nsv442776 20 1509580 1541893 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv9776 20 1510534 1532773 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25908,nssv27098,nssv26429,nssv24080,nssv27660,nssv26834,nssv24994,nssv24728,nssv25564,nssv25555,nssv22579,nssv24745,nssv28605,nssv27887,nssv24540,nssv25200,nssv24247,nssv26069,nssv25426,nssv21875,nssv27666 M 31 4 17 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10847,NA10863,NA11830,NA12155,NA18502,NA18517,NA18537,NA18552,NA18563,NA18564,NA18572,NA18860,NA18942,NA18975,NA19007,NA19144,NA19173,NA19221,NA19240 nsv438306 20 1517704 1520374 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470757,nssv470754,nssv470755,nssv470758,nssv470756,nssv470751,nssv470750,nssv470753 M 269 0 8 Samples from several populations that are part of the HapMap project. "" NA18862,NA18863,NA19130,NA19132,NA19160,NA19161,NA19239,NA19240 nsv9777 20 1532773 1544533 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26088,nssv25929,nssv24626,nssv26444,nssv25019,nssv24107,nssv24754,nssv27668,nssv25481,nssv27108,nssv25587,nssv25578,nssv26905,nssv28606 M 31 0 14 Samples from several populations that are part of the HapMap project. "" NA07048,NA10863,NA11830,NA12155,NA18517,NA18537,NA18552,NA18564,NA18942,NA19007,NA19144,NA19173,NA19221,NA19240 esv33908 20 1539178 1546789 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93862,essv98264,essv97339,essv95830,essv92676,essv96121,essv98633,essv97627 M 51 0 8 "" 21634,21772,21879,21911,21944,22007,22085,22278 nsv9778 20 1549383 1554274 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24770 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18975 nsv3255 20 1594524 1628522 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6923 S 9 0 1 "" NA12156 nsv9779 20 1618232 1622721 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27499 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19132 nsv3256 20 1632768 1665764 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2324 S 9 1 0 "" NA18555 nsv510481 20 1675614 1681614 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621495,nssv618452 M 4 0 2 "" CHM,NA15510 nsv179012 20 1726688 1726688 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197590 M 24 "" nsv3257 20 1785670 1831914 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6924,nssv3056,nssv4517,nssv1584 M 9 4 0 "" NA12156,NA12878,NA18555,NA19240 nsv179937 20 1803507 1804365 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198515 M 24 "" nsv178809 20 1923953 1924020 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197387 M 24 "" nsv515976 20 1940396 1949015 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv665563,nssv669247 M 2026 2 0 "" nsv179900 20 1965280 1965342 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198478 M 24 "" nsv3258 20 2019935 2052744 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6925 S 9 1 0 "" NA12156 dgv1303e1 20 2078560 2423469 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv7068,esv841 M 271 0 0 "" NA18537 esv32916 20 2090553 2094254 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv95643 S 51 1 0 "" 21841 nsv3259 20 2104298 2135401 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10280 S 9 1 0 "" NA18956 nsv509758 20 2151466 2199261 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619839 S 4 1 0 "" NA10860 essv4928 20 2152811 2307429 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18537 nsv458850 20 2152811 2319782 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535729 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01197 nsv9781 20 2153045 2313970 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27674,nssv25980,nssv25577 M 31 1 2 Samples from several populations that are part of the HapMap project. "" NA18502,NA18537,NA18980 nsv817881 20 2158530 2290673 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417126 S 112 1 0 "" NA18537 nsv178693 20 2169756 2169838 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197271 M 24 "" esv34630 20 2173481 2312390 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6979373,essv6979372,essv6979371,essv6986845,essv6986844 M 771 1 0 "" NA18537 nsv179633 20 2307904 2308608 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198211 M 24 "" nsv528245 20 2369742 2377222 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704808 S 2026 0 1 "" nsv178690 20 2376630 2384455 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197268 M 24 "" nsv179665 20 2403916 2403916 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198243 M 24 "" nsv3260 20 2417531 2446060 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5862 S 9 1 0 "" NA19129 nsv180065 20 2462992 2463105 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198643 M 24 "" esv32983 20 2565645 2565722 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93608 S 51 1 0 "" 21972 esv33713 20 2575002 2575208 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97176 S 51 0 1 "" 22075 esv33525 20 2575662 2576248 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101335,essv95565,essv97399,essv96258,essv94301 M 51 5 0 "" 21805,21841,21879,22371,22394 esv33726 20 2578819 2579193 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100669 S 51 1 0 "" 21656 nsv458852 20 2586579 2632924 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535731 S 1557 0 1 "" 1780862574_A nsv519426 20 2615729 2630206 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv673188,nssv656147 M 2026 0 2 "" nsv833895 20 2658810 2810882 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454896 S 95 0 1 "" nsv522009 20 2673678 2959188 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694778 S 2026 1 0 "" nsv510780 20 2674695 2760799 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622796 S 4 0 1 "" NA18994 nsv518364 20 2735994 2749409 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695791 S 2026 0 1 "" nsv3261 20 2749309 2780400 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4658 S 9 0 1 "" NA19129 dgv79n6 20 2751148 2754424 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv179644,nsv178768 M 24 "" nsv518708 20 2794289 2794427 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696159 S 2026 0 1 "" nsv3262 20 2801206 2821735 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3057 S 9 1 0 "" NA18555 nsv519680 20 2811479 2813976 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696989 S 2026 0 1 "" nsv179703 20 2812002 2812323 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198281 M 24 "" nsv833896 20 2852497 2991038 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454898,nssv1454897 M 95 0 2 "" nsv3263 20 2891493 2897995 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6926 S 9 1 0 "" NA12156 nsv180455 20 2898209 2898320 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv199033 M 24 "" nsv833897 20 2918970 3103792 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454899 S 95 0 1 "" nsv180708 20 2958205 2959322 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv199286 M 24 "" nsv482064 20 2972268 2974391 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558425 S 1 1 0 "" KB1 esv33482 20 2975728 2982586 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100469 S 51 0 1 "" 22298 nsv516616 20 2997890 2998393 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv669599,nssv681086,nssv674201,nssv683238 M 2026 0 4 "" nsv523746 20 2997890 3001255 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699563 S 2026 0 1 "" nsv521437 20 3036010 3039270 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698047 S 2026 0 1 "" nsv526273 20 3038124 3039270 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702548 S 2026 0 1 "" nsv180149 20 3056283 3065149 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198727 M 24 "" nsv524482 20 3067555 3086979 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700420 S 2026 1 0 "" nsv833898 20 3076069 3238538 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454901,nssv1454900,nssv1454902 M 95 1 2 "" nsv528355 20 3119337 3171225 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704940 S 2026 0 1 "" nsv179045 20 3186624 3186760 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197623 M 24 "" nsv3264 20 3402206 3434895 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5864 S 9 1 0 "" NA19129 nsv525626 20 3403759 3463924 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701775 S 2026 0 1 "" nsv520565 20 3581240 3668701 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698844,nssv672596,nssv688470 M 2026 0 3 "" nsv833899 20 3637942 3806997 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454904,nssv1454903 M 95 0 2 "" nsv179720 20 3667753 3667935 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198298 M 24 "" nsv522507 20 3775309 3778474 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705875 S 2026 0 1 "" nsv520430 20 3786807 3798968 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697415 S 2026 0 1 "" nsv527710 20 3791027 3798968 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704190 S 2026 0 1 "" nsv521026 20 3794397 3798968 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv680088,nssv687938 M 2026 0 2 "" nsv527924 20 3920756 3935738 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704431 S 2026 1 0 "" nsv833900 20 3953698 4129964 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454905 S 95 0 1 "" nsv442479 20 3985528 3988740 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv526327 20 3995486 3997691 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702617 S 2026 1 0 "" nsv509759 20 4007838 4030905 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618134 S 4 1 0 "" CHM nsv519586 20 4023934 4027223 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv656978,nssv663245,nssv695880 M 2026 0 3 "" nsv522440 20 4023934 4027991 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705798 S 2026 1 0 "" nsv178938 20 4153254 4153361 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197516 M 24 "" nsv180352 20 4156331 4156382 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198930 M 24 "" nsv833901 20 4171812 4409583 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454906 S 95 1 0 "" nsv517768 20 4219364 4220499 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv653162,nssv677265,nssv691676,nssv660514 M 2026 0 4 "" nsv3266 20 4237140 4270786 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4518 S 9 1 0 "" NA12878 nsv509760 20 4324172 4377505 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623821,nssv619840 M 4 2 0 "" NA10860,NA18994 nsv3267 20 4355305 4388279 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4521,nssv1585,nssv10281,nssv2325,nssv7644 M 9 5 0 "" NA12156,NA12878,NA18555,NA18956,NA19240 nsv442777 20 4394568 4398987 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv3268 20 4558318 4566067 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7645 S 9 0 1 "" NA12156 nsv179053 20 4656450 4658959 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197631 M 24 "" nsv526507 20 4741678 4743703 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702817 S 2026 0 1 "" nsv522948 20 4785063 4788270 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698615 S 2026 0 1 "" nsv833902 20 4859003 5044432 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454907 S 95 0 1 "" nsv179361 20 4886550 4894612 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197939 M 24 "" nsv520095 20 4896248 4918721 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv660675,nssv684678 M 2026 0 2 "" nsv179267 20 4967904 4969123 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197845 M 24 "" nsv178643 20 4970611 4970896 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197221 M 24 "" nsv519098 20 4989429 4994930 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696572 S 2026 0 1 "" nsv833904 20 5200403 5378345 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454908 S 95 1 0 "" nsv515639 20 5232380 5246668 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv673714,nssv686767,nssv679901,nssv672597,nssv679624,nssv658978,nssv662561,nssv692896,nssv674753,nssv698796,nssv688664,nssv667291,nssv673346,nssv683169,nssv674686,nssv654702,nssv688471,nssv684366,nssv679234,nssv656895,nssv664202,nssv682234 M 2026 0 22 "" nsv522879 20 5237644 5250653 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698535 S 2026 0 1 "" nsv528917 20 5244005 5250653 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705604 S 2026 0 1 "" nsv526083 20 5376989 5435848 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702327 S 2026 0 1 "" nsv179922 20 5419882 5419882 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198500 M 24 "" nsv179834 20 5419937 5419937 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198412 M 24 "" nsv458856 20 5422901 5436644 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535732 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00556 nsv521571 20 5427379 5435848 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698187 S 2026 0 1 "" nsv179202 20 5573011 5573011 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197780 M 24 "" nsv519257 20 5589273 5598318 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696751 S 2026 0 1 "" nsv3269 20 5605247 5631309 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3058 S 9 1 0 "" NA18555 nsv509761 20 5614872 5678807 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619841 S 4 1 0 "" NA10860 nsv180448 20 5628106 5628106 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv199026 M 24 "" esv33031 20 5629664 5632729 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99991 S 51 0 1 "" 22086 nsv507902 20 5638437 5644437 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623301 S 4 1 0 "" NA18994 nsv522708 20 5645947 5646185 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv706120 S 2026 0 1 "" nsv3270 20 5672046 5705578 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5865 S 9 1 0 "" NA19129 nsv833905 20 5702954 5869865 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454909 S 95 1 0 "" nsv3271 20 5716205 5750840 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3059 S 9 1 0 "" NA18555 nsv523886 20 5776375 5788539 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699728 S 2026 0 1 "" nsv525940 20 5851323 5852040 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702146 S 2026 0 1 "" nsv179031 20 5890988 5891316 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197609 M 24 "" nsv518036 20 6008395 6010913 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695447 S 2026 0 1 "" nsv522691 20 6078025 6078577 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv706101 S 2026 0 1 "" dgv80n6 20 6098946 6099291 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv179055,nsv179670 M 24 "" nsv833906 20 6160583 6187718 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454918,nssv1454910,nssv1454912,nssv1454917,nssv1454911,nssv1454916,nssv1454913,nssv1454915,nssv1454914 M 95 1 8 "" nsv179334 20 6199288 6199367 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197912 M 24 "" nsv180354 20 6199294 6199345 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198932 M 24 "" nsv458859 20 6234656 6309273 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535733 S 1557 0 1 "" 1780854327_A nsv833907 20 6258609 6409457 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454920,nssv1454919 M 95 2 0 "" nsv179515 20 6315156 6319517 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198093 M 24 "" nsv3272 20 6345170 6386484 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7646 S 9 0 1 "" NA12156 nsv510482 20 6355051 6361051 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624240,nssv618453,nssv622312,nssv621496 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv833908 20 6357810 6503779 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454922,nssv1454921,nssv1454923 M 95 3 0 "" dgv66n17 20 6364132 6371578 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437837,nsv437836 M 60 0 2 "" NA18863,NA19194 nsv438307 20 6370001 6370570 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470761,nssv470765,nssv470759,nssv470762,nssv470760,nssv470764 M 269 0 6 Samples from several populations that are part of the HapMap project. "" NA18862,NA18863,NA19160,NA19161,NA19192,NA19194 nsv3273 20 6389858 6423534 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7647 S 9 1 0 "" NA12156 nsv180600 20 6391443 6391498 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv199178 M 24 "" nsv833909 20 6465467 6615589 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454924 S 95 1 0 "" nsv180271 20 6534675 6534730 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198849 M 24 "" nsv833910 20 6566466 6724992 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454925 S 95 1 0 "" nsv517786 20 6647595 6648202 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv653244,nssv672530,nssv668733 M 2026 0 3 "" nsv3274 20 6743790 6776927 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7648 S 9 1 0 "" NA12156 nsv3275 20 6789732 6818469 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7649 S 9 0 1 "" NA12156 nsv180537 20 6808578 6814106 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv199115 M 24 "" nsv507903 20 6835962 6841962 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620684,nssv619269,nssv623302 M 4 3 0 "" NA10860,NA15510,NA18994 nsv833911 20 6948133 7100128 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454926 S 95 1 0 "" nsv522626 20 6998017 7000333 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv706024 S 2026 0 1 "" nsv3277 20 7019888 7082881 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9594,nssv6927,nssv2327 M 9 0 3 "" NA12156,NA18507,NA18555 nsv180567 20 7034511 7038364 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv199145 M 24 "" dgv83n6 20 7044782 7050858 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv178607,nsv179777 M 24 "" nsv180067 20 7070316 7079155 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198645 M 24 "" nsv3278 20 7152802 7186836 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1586 S 9 1 0 "" NA19240 dgv84n6 20 7222337 7222663 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv178563,nsv178653 M 24 "" nsv833912 20 7288381 7476529 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454938,nssv1454935,nssv1454928,nssv1454927,nssv1454931,nssv1454950,nssv1454930,nssv1454937,nssv1454936,nssv1454939,nssv1454933,nssv1454932,nssv1454946,nssv1454934,nssv1454945,nssv1454941,nssv1454947,nssv1454944,nssv1454929,nssv1454940,nssv1454943,nssv1454948,nssv1454949,nssv1454942 M 95 24 0 "" nsv3279 20 7310920 7356266 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6928 S 9 0 1 "" NA12156 nsv515652 20 7347802 7348195 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv678325,nssv669849,nssv655240,nssv674000,nssv663191,nssv681256,nssv662735,nssv681804,nssv676714,nssv658094,nssv666719,nssv690607,nssv659874,nssv651942,nssv682202,nssv687347,nssv663484,nssv693138,nssv687667,nssv655173,nssv689424,nssv680558,nssv686779,nssv666020,nssv675347,nssv690104,nssv690957,nssv681912,nssv669217,nssv661933,nssv652608,nssv687216,nssv685582,nssv662795,nssv678946,nssv668832,nssv687478,nssv655475,nssv678054,nssv692897,nssv690566,nssv681697,nssv663246,nssv686400,nssv690712,nssv690982,nssv657322,nssv657023,nssv668250,nssv682930,nssv675412,nssv688029,nssv665099,nssv675815,nssv662562,nssv684866,nssv677386,nssv689763,nssv686742,nssv654478,nssv661762,nssv659248,nssv683417,nssv672949,nssv681140,nssv673166,nssv670319,nssv684936 M 2026 0 68 "" nsv179223 20 7549037 7555572 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197801 M 24 "" nsv833913 20 7577709 7756617 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454951 S 95 1 0 "" nsv520691 20 7648108 7648582 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv687052,nssv687071,nssv674123 M 2026 0 3 "" nsv521253 20 7690326 7700366 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv688617,nssv689181 M 2026 0 2 "" nsv833915 20 7727486 7885950 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454952 S 95 1 0 "" nsv180616 20 7805738 7806358 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv199194 M 24 "" esv2422203 20 7897426 8392248 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161475 S 181 1 0 "" ND05461 dgv1304e1 20 8002182 8595665 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv858,essv25097,essv23875 M 271 0 0 "" NA12814 nsv458863 20 8044130 8523671 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535735 S 1557 1 0 "" NINDS_129 nsv521502 20 8044130 8523671 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698117 S 2026 1 0 "" esv35097 20 8050867 8517610 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6986762,essv6978999,essv6979000,essv6986763,essv6990313 M 771 1 0 "" NA12814 nsv3280 20 8053348 8083975 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6929 S 9 1 0 "" NA12156 nsv3281 20 8059247 8104964 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6930 S 9 0 1 "" NA12156 nsv517649 20 8099262 8101919 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv652666,nssv678098,nssv679473,nssv659402 M 2026 0 4 "" dgv240n21 20 8165478 8174894 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv522958,nsv525803 M 2026 0 2 "" nsv521272 20 8256944 8278515 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv691021,nssv693573 M 2026 0 2 "" nsv3282 20 8305182 8350244 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7650 S 9 0 1 "" NA12156 nsv517930 20 8327730 8363399 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694182 S 2026 0 1 "" nsv524662 20 8440650 8442748 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700631 S 2026 0 1 "" nsv179513 20 8464652 8468340 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198091 M 24 "" nsv179322 20 8470210 8470210 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197900 M 24 "" nsv178902 20 8499173 8499258 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197480 M 24 "" nsv9782 20 8551632 8558358 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27682 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18502 nsv833916 20 8650365 8782501 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454953 S 95 1 0 "" nsv179314 20 8707792 8707792 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197892 M 24 "" nsv179312 20 8750134 8750183 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197890 M 24 "" nsv179883 20 8755150 8764491 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198461 M 24 "" nsv458864 20 8861264 8893635 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535736 S 1557 0 1 "" 1780862528_A nsv833917 20 8872139 9036846 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454954 S 95 1 0 "" dgv1305e1 20 8898291 9227700 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv16971,esv269 M 271 0 0 "" NA19144 nsv9783 20 9017314 9023100 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28607 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19221 nsv515892 20 9085424 9100096 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv692836,nssv665175 M 2026 0 2 "" nsv179569 20 9097574 9097626 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198147 M 24 "" nsv528402 20 9100096 9104203 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704992 S 2026 0 1 "" nsv9784 20 9116195 9119630 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25225 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18563 nsv179491 20 9117124 9117219 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198069 M 24 "" nsv179490 20 9117508 9118179 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198068 M 24 "" nsv3283 20 9152140 9171465 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7651 S 9 0 1 "" NA12156 nsv3284 20 9232263 9262450 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5866 S 9 1 0 "" NA19129 nsv529042 20 9257713 9265266 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705755 S 2026 0 1 "" nsv178973 20 9337103 9337103 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197551 M 24 "" nsv458865 20 9362433 9386172 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535737 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00900 nsv3285 20 9411267 9427884 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10283,nssv1587 M 9 2 0 "" NA18956,NA19240 nsv521694 20 9539628 9540617 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698315 S 2026 0 1 "" nsv524114 20 9539628 9540676 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699992 S 2026 1 0 "" nsv522383 20 9566761 9567475 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695163 S 2026 0 1 "" dgv85n6 20 9644762 9644823 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv179947,nsv179433 M 24 "" nsv458867 20 9650970 9658169 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535738 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00467 nsv517670 20 9650970 9658169 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv652772,nssv667125,nssv697183,nssv674688 M 2026 0 4 "" nsv527514 20 9792170 9796516 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703968 S 2026 0 1 "" nsv522874 20 9847439 10767210 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698529 S 2026 0 1 "" nsv833918 20 9879029 10005754 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454955 S 95 0 1 "" nsv3286 20 9890270 9914814 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9363 S 9 1 0 "" NA18517 nsv519576 20 9923888 9930725 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv692898,nssv656949 M 2026 2 0 "" nsv833919 20 9964401 10159635 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454956 S 95 1 0 "" nsv3288 20 9970923 10015541 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7652 S 9 0 1 "" NA12156 nsv524009 20 10012529 10016488 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699869 S 2026 0 1 "" nsv526862 20 10040642 10050530 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703220 S 2026 1 0 "" nsv3289 20 10069599 10093732 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7653 S 9 0 1 "" NA12156 nsv180050 20 10078897 10078963 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198628 M 24 "" nsv3290 20 10152962 10188299 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1588 S 9 1 0 "" NA19240 nsv179520 20 10252570 10252570 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198098 M 24 "" nsv507904 20 10376997 10382997 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619270,nssv620685 M 4 2 0 "" NA10860,NA15510 nsv833920 20 10388840 10579699 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454957 S 95 1 0 "" nsv507905 20 10469975 10475975 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617947,nssv620686,nssv623303,nssv619271 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv3291 20 10552298 10584430 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6932 S 9 1 0 "" NA12156 dgv1306e1 20 10840138 11064725 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv21766,essv16882,essv9927,essv10916,essv12677,essv11497,esv42 M 271 0 0 "" NA12239,NA18500,NA19145,NA19173,NA19205,NA19209 nsv178660 20 10958924 10967209 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197238 M 24 "" nsv528348 20 10961452 10962704 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704932 S 2026 0 1 "" nsv521990 20 10966626 10985154 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694757 S 2026 0 1 "" nsv7339 20 10993625 12908119 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9364 S 9 0 0 "" NA18517 nsv510483 20 11159221 11165221 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622313,nssv624241,nssv618454 M 4 0 3 "" CHM,NA10860,NA18994 nsv3292 20 11181247 11215986 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7654 S 9 0 1 "" NA12156 nsv458869 20 11219614 11254751 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535739 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00926 nsv3293 20 11233092 11242270 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10284 S 9 1 0 "" NA18956 nsv522929 20 11359026 11464418 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698592 S 2026 1 0 "" dgv87n6 20 11465266 11465601 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv179209,nsv180019 M 24 "" dgv1307e1 20 11638021 12381393 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv16060,esv857 M 271 0 0 "" NA18501 dgv1308e1 20 11737907 12235765 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv9569,essv13324,essv12644 M 271 0 0 "" NA18500,NA18501 dgv168e55 20 11754600 12230700 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv34727,esv34746 M 771 2 0 "" NA18500,NA18501 nsv9785 20 11768348 11773191 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26000 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18537 nsv833921 20 11810667 11951142 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454958 S 95 1 0 "" nsv833922 20 11956348 12134483 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454959 S 95 0 1 "" nsv9786 20 12189322 12216971 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28608 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19221 nsv528024 20 12250448 12294236 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704553 S 2026 1 0 "" nsv9787 20 12259622 12262043 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27537 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19132 nsv517125 20 12412082 12417505 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv691911,nssv680936,nssv659753,nssv684364,nssv665449,nssv686162,nssv653826 M 2026 0 7 "" nsv527645 20 12431602 12507521 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704116 S 2026 0 1 "" nsv458870 20 12527343 12556070 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535740 S 1557 0 1 "" 1780862459_A dgv1309e1 20 12581827 12609944 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv876,essv13325 M 271 0 0 "" NA18500 nsv178600 20 12589936 12590063 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197178 M 24 "" essv9582 20 12599075 12609633 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18501 nsv9788 20 12616451 12625063 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26107,nssv26458 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA19144,NA19173 nsv527331 20 12661069 12661699 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703756 S 2026 0 1 "" nsv522376 20 12678872 12719339 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695155 S 2026 0 1 "" nsv518184 20 12691808 13292672 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695606 S 2026 1 0 "" esv2751905 20 12751688 12886100 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6984397,essv6987588,essv6988799 M 771 1 0 "" BEC_701 nsv833923 20 12852689 13012426 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454961,nssv1454960,nssv1454963,nssv1454962 M 95 2 2 "" nsv525856 20 12889696 12895126 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702051 S 2026 0 1 "" nsv179108 20 12911793 12911793 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197686 M 24 "" nsv833924 20 12945093 13137239 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454964 S 95 1 0 "" nsv178651 20 13350619 13358123 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197229 M 24 "" nsv520595 20 13369045 13395896 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697510 S 2026 0 1 "" nsv3294 20 13575821 13583341 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6933 S 9 1 0 "" NA12156 nsv3295 20 13752995 13787665 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4522 S 9 1 0 "" NA12878 nsv509762 20 13859162 13892836 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618135,nssv619842,nssv623822,nssv621122 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv3296 20 13861608 13911133 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4523,nssv9863,nssv10285,nssv7655,nssv1589,nssv2328 M 9 6 0 "" NA12156,NA12878,NA18507,NA18555,NA18956,NA19240 nsv179414 20 13911175 13911669 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197992 M 24 "" nsv526954 20 13943214 14003947 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703326 S 2026 0 1 "" nsv458872 20 14137779 14265390 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535741 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00627 nsv3297 20 14315944 14348623 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6934 S 9 1 0 "" NA12156 nsv833926 20 14358153 14520336 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454965 S 95 1 0 "" nsv523791 20 14368556 14382250 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699618 S 2026 0 1 "" nsv442480 20 14376080 14390471 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv817882 20 14382250 14405834 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418331,nssv1418332 M 112 0 2 "" NA19092,NA19094 nsv524145 20 14403497 14414618 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700023 S 2026 0 1 "" nsv179622 20 14425294 14426955 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198200 M 24 "" dgv88n6 20 14477069 14477395 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv179949,nsv178641 M 24 "" nsv517905 20 14484808 14574845 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695316 S 2026 0 1 "" dgv241n21 20 14501745 14521967 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv527332,nsv528856 M 2026 0 2 "" esv2751906 20 14606364 14974100 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6983626,essv6983625,essv6989382,essv6989832 M 771 0 1 "" BEC_674 dgv501n27 20 14606870 14761002 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv458879,nsv458877 M 1557 0 2 "" 1782681555_A,HGDP00683 nsv517126 20 14616243 14662457 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv680937,nssv653827,nssv656825,nssv688340 M 2026 0 4 "" nsv179889 20 14628401 14628460 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198467 M 24 "" dgv242n21 20 14634297 14742361 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv525733,nsv526915 M 2026 0 2 "" esv2422304 20 14647810 14874297 CNV Deletion Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161288 S 181 0 1 "" ND03938 dgv1310e1 20 14653888 14803457 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv22171,essv17860,esv547 M 271 0 0 "" NA10857 nsv517845 20 14653888 14814618 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695250 S 2026 0 1 "" nsv458882 20 14679595 14709710 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535745 S 1557 0 1 "" 1780862071_A dgv243n21 20 14679595 14806910 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv523283,nsv517275 M 2026 0 39 "" dgv502n27 20 14685843 14965240 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv458890,nsv458886 M 1557 0 2 "" HGDP00372,HGDP00643 nsv185 20 14700001 14897555 CNV Loss Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv185 S 1 0 1 "" NA15510 nsv3300 20 14700001 14897555 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv11035,nssv7657 M 9 0 2 "" NA12156,NA15510 nsv458888 20 14706111 14733326 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535749 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01303 nsv458889 20 14706111 14755599 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535750 S 1557 0 1 "" 1780862229_A dgv503n27 20 14707169 14797576 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv458892,nsv458891 M 1557 0 2 "" HGDP00548,NINDS_206 dgv169e55 20 14709710 14792049 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv2751907,esv34236,esv34959 M 771 0 3 "" BEC_51,NA10857,NA12043 esv33655 20 14719280 14884551 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101471,essv98904,essv97575,essv97532,essv101201,essv93932,essv100779,essv96859,essv101020,essv95203,essv98303,essv94744,essv94001,essv101428,essv94375,essv96883,essv97836,essv95579,essv95474,essv93156,essv95272,essv97295,essv101717,essv95769,essv94597,essv99123,essv92979,essv92817,essv93725,essv96098,essv96639,essv97192,essv98539,essv100089,essv95948,essv93573,essv93323,essv99582,essv94961,essv92592,essv98055,essv96488,essv99234,essv97677,essv100124,essv100580,essv100308,essv99508,essv98378,essv96375,essv94260 M 51 50 0 "" 21603,21606,21616,21618,21634,21656,21659,21693,21721,21772,21791,21802,21805,21808,21817,21837,21841,21847,21863,21872,21879,21909,21911,21932,21938,21939,21944,21972,22007,22011,22075,22085,22086,22127,22128,22170,22217,22231,22233,22259,22261,22275,22278,22286,22298,22300,22335,22352,22371,22394 nsv433323 20 14720789 14884935 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463204 S 9 0 1 "" NA15510 nsv437184 20 14724940 14777382 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467065 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA10857 nsv522604 20 14725701 14884935 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705996 S 2026 0 1 "" nsv817883 20 14728785 14770129 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417072,nssv1417061 M 112 0 2 "" NA10857,NA12043 dgv504n27 20 14729684 14765453 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv458900,nsv458901,nsv458894,nsv458906,nsv458902,nsv458908,nsv458893,nsv458903 M 1557 0 8 "" 1780854257_A,1780862585_A,1782681091_A,1782681094_A,HGDP00806,HGDP01155,NINDS_105,NINDS_38 dgv505n27 20 14729684 14771472 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv458899,nsv458895,nsv458905,nsv458904,nsv458898,nsv458897 M 1557 0 6 "" 1780854567_A,1798860280_A,HGDP00526,HGDP00810,NINDS_200,NINDS_60 essv23099 20 14729684 14792049 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12043 nsv438308 20 14742361 14771472 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470769,nssv470767,nssv470766,nssv470768 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA10857,NA12043 nsv458909 20 14746517 14771472 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535770 S 1557 0 1 "" 1782681079_A nsv458911 20 14749353 14761002 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535771 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00244 nsv9789 20 14759977 14763093 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27545 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19132 nsv520315 20 14760532 14965240 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697344 S 2026 0 1 "" dgv506n27 20 14788438 14818398 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv458913,nsv458912 M 1557 0 2 "" HGDP00700,HGDP00733 dgv507n27 20 14788438 14879494 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv458915,nsv458914 M 1557 0 2 "" HGDP00675,HGDP00725 nsv458916 20 14796659 14915506 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535776 S 1557 0 1 "" NINDS_117 nsv520440 20 14806910 14884935 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv671444,nssv683860 M 2026 0 2 "" nsv458917 20 14810972 14856741 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535777 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00693 esv34302 20 14817903 14888687 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6978910,essv6978909,essv6989053 M 771 0 1 "" NA12761 dgv1311e1 20 14825886 14863051 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv21640,esv1421 M 271 0 0 "" NA12761 esv2751908 20 14847400 14897000 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6985083,essv6989473 M 771 0 1 "" BEC_94 esv2422391 20 14851206 14956995 CNV Deletion Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161472 S 181 0 1 "" ND04305 nsv458920 20 14869606 14991623 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535779 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00066 nsv519461 20 14884935 14965240 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696866 S 2026 0 1 "" nsv528455 20 14897763 14915506 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705055 S 2026 0 1 "" nsv524481 20 14955730 15330919 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700419 S 2026 0 1 "" nsv458922 20 14960297 14991623 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535780 S 1557 1 0 "" 1780854481_A nsv520328 20 14973831 15025030 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697351 S 2026 0 1 "" nsv458923 20 14980845 15012452 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535781 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01299 nsv516721 20 15000514 15091806 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv706039,nssv704488,nssv686389,nssv670438 M 2026 0 4 "" nsv458927 20 15011679 15091806 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535782 S 1557 0 1 "" NINDS_247 nsv458928 20 15024599 15031626 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535783 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00157 nsv180164 20 15028617 15030180 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198742 M 24 "" nsv179863 20 15030195 15036011 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198441 M 24 "" nsv526767 20 15034277 15171632 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703119 S 2026 0 1 "" nsv3301 20 15055532 15089567 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5867 S 9 0 1 "" NA19129 nsv458930 20 15058426 15089004 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535785 S 1557 0 1 "" NINDS_152 nsv458932 20 15091806 15125309 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535786 S 1557 0 1 "" 1780862042_A nsv522855 20 15126253 15127023 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698509 S 2026 0 1 "" nsv524294 20 15194472 15196832 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700195 S 2026 0 1 "" dgv1312e1 20 15230448 15271282 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv15973,essv8659,essv7874,essv16183 M 271 0 0 "" NA18506,NA19101,NA19140,NA19142 dgv1313e1 20 15230448 15279007 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1367,essv10194 M 271 0 0 "" NA18516 nsv9790 20 15249381 15252323 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26472,nssv22271,nssv27893,nssv25841,nssv25504,nssv24133,nssv22480,nssv27686,nssv27111,nssv25250,nssv25044,nssv24303,nssv26020,nssv25601 M 31 0 14 Samples from several populations that are part of the HapMap project. "" NA07029,NA12740,NA12802,NA12872,NA18504,NA18537,NA18552,NA18563,NA18564,NA18860,NA18942,NA18972,NA19007,NA19144 dgv89n6 20 15249732 15251771 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv179952,nsv178993 M 24 "" esv33865 20 15249910 15251158 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101609,essv98894,essv97522,essv100854,essv96767,essv101099,essv98191,essv94650,essv101320,essv94381,essv96947,essv95723,essv95437,essv95337,essv101726,essv94522,essv98980,essv92875,essv92833,essv93728,essv96652,essv97251,essv98628,essv93355,essv99677,essv92570,essv98090,essv96540,essv99148,essv100298,essv98428,essv94244 M 51 31 1 "" 21603,21606,21616,21656,21659,21693,21772,21791,21805,21808,21817,21841,21847,21872,21909,21932,21938,21939,21944,21972,22011,22075,22085,22170,22217,22233,22259,22261,22275,22300,22352,22394 nsv3302 20 15250167 15272114 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9595 S 9 0 1 "" NA18507 nsv817885 20 15256563 15265978 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416512 S 112 0 1 "" NA18516 nsv442778 20 15259370 15265974 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" esv34824 20 15259400 15265218 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6988128,essv6979215 M 771 0 1 "" NA18507 dgv1314e1 20 15259431 15265978 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv13322,essv9573 M 271 0 0 "" NA18501,NA18507 nsv517450 20 15259431 15265978 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv676935,nssv654571,nssv669196,nssv672183,nssv659965,nssv681378,nssv671374,nssv669939,nssv680434,nssv666517,nssv664085,nssv673606,nssv680152,nssv693815,nssv693908,nssv680044,nssv663399,nssv664038,nssv663704,nssv655755,nssv672736,nssv659271,nssv666902,nssv664921,nssv661279,nssv666350,nssv652050,nssv682884,nssv674477,nssv655406,nssv657417,nssv681334,nssv666398,nssv661071,nssv670480,nssv691654,nssv663218,nssv674982,nssv679729,nssv656859,nssv679857,nssv678097,nssv652601,nssv673309,nssv656977,nssv687176,nssv662204,nssv667346,nssv665615,nssv666439,nssv677871,nssv662930,nssv656654,nssv686163,nssv676751,nssv685297 M 2026 0 56 "" nsv817886 20 15259431 15265978 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416339,nssv1416350 M 112 0 2 "" NA19140,NA19142 essv13334 20 15259431 15271282 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18500 essv15919 20 15259431 15279007 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19205 nsv433174 20 15260796 15266767 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463055 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA18507 nsv833927 20 15310602 15468185 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454966 S 95 1 0 "" nsv524714 20 15311130 15316919 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700699 S 2026 0 1 "" nsv179072 20 15383302 15383465 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197650 M 24 "" nsv180044 20 15387285 15396937 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198622 M 24 "" esv2751909 20 15437871 15604007 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6988456,essv6981831,essv6985675,essv6981830 M 771 1 0 "" BEC_491 nsv518630 20 15457110 15457729 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696080 S 2026 1 0 "" nsv458933 20 15497323 15509894 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535787 S 1557 0 1 "" NINDS_35 nsv833928 20 15567962 15728758 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454968,nssv1454967 M 95 1 1 "" nsv3303 20 15604109 15648969 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7658 S 9 0 1 "" NA12156 nsv458934 20 15686086 15720582 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535788 S 1557 0 1 "" 1780862459_A nsv519883 20 15686086 15765106 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694352 S 2026 1 0 "" nsv524386 20 15707361 15708969 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700303 S 2026 0 1 "" nsv833929 20 15713372 15925337 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454969,nssv1454971,nssv1454972,nssv1454970 M 95 4 0 "" nsv458935 20 15744658 15764595 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535789 S 1557 0 1 "" 1780862001_A nsv524409 20 15755441 15756444 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700331 S 2026 0 1 "" nsv518011 20 15761644 15765106 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695423 S 2026 0 1 "" nsv518914 20 15763316 15764595 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696374 S 2026 0 1 "" nsv510484 20 15796930 15802930 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622314,nssv618455,nssv621497,nssv624243 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv3304 20 15855834 15890697 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4524 S 9 1 0 "" NA12878 nsv520909 20 16026767 16035405 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv692688,nssv700629,nssv677377 M 2026 0 3 "" nsv833930 20 16082347 16250763 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454991,nssv1454975,nssv1454980,nssv1454987,nssv1454984,nssv1454992,nssv1454993,nssv1454989,nssv1454988,nssv1454994,nssv1454990,nssv1454974,nssv1454986,nssv1454979,nssv1454985,nssv1454978,nssv1454983,nssv1454982,nssv1454973,nssv1454981,nssv1454977,nssv1454976 M 95 22 0 "" nsv178798 20 16153033 16162680 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197376 M 24 "" nsv3305 20 16167638 16201201 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5868 S 9 1 0 "" NA19129 dgv244n21 20 16184837 16196453 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv519621,nsv516591 M 2026 0 4 "" nsv523556 20 16214622 16219850 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699335 S 2026 0 1 "" nsv179537 20 16217144 16217538 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198115 M 24 "" nsv833931 20 16256276 16408596 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454996,nssv1454995 M 95 0 2 "" nsv179502 20 16338626 16338626 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198080 M 24 "" nsv180138 20 16429942 16430019 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198716 M 24 "" nsv517032 20 16508990 16533314 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv670481,nssv693909,nssv661327,nssv690867,nssv674685,nssv662021,nssv685963,nssv657279,nssv664734,nssv682295,nssv680713,nssv659300,nssv665632,nssv676486,nssv670612,nssv688771,nssv653647,nssv685818,nssv665873 M 2026 0 19 "" nsv438309 20 16515202 16533314 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470770,nssv470771 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA19102,NA19103 nsv817887 20 16515202 16533314 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416814 S 112 0 1 "" NA19159 dgv508n27 20 16515202 16537003 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv458937,nsv458941,nsv458939,nsv458942,nsv458936,nsv458938 M 1557 0 6 "" HGDP00576,HGDP00904,HGDP00912,HGDP00920,HGDP00934,HGDP00942 nsv442482 20 16516058 16534634 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv525956 20 16541159 16549519 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702165 S 2026 0 1 "" dgv90n6 20 16679075 16687983 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv178619,nsv180007 M 24 "" nsv3306 20 16681097 16725728 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4659 S 9 0 1 "" NA19129 nsv524661 20 16688597 16696566 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700630 S 2026 0 1 "" nsv522930 20 16770692 16779893 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698593 S 2026 0 1 "" dgv91n6 20 17009945 17010026 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv179155,nsv178899,nsv180562 M 24 "" nsv527344 20 17020043 17043210 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703770 S 2026 0 1 "" nsv3307 20 17037582 17082051 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2329 S 9 0 1 "" NA18555 nsv179945 20 17196709 17203742 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198523 M 24 "" dgv1315e1 20 17305806 17338095 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv13490,esv1283,essv14229 M 271 0 0 "" NA18913,NA18914 nsv3308 20 17330134 17363469 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5869 S 9 1 0 "" NA19129 nsv517986 20 17358843 17370063 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695398 S 2026 0 1 "" nsv520899 20 17370063 17371111 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv686875,nssv677243 M 2026 0 2 "" nsv3309 20 17389458 17398084 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4525 S 9 1 0 "" NA12878 nsv510781 20 17472461 17527376 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619007 S 4 0 1 "" NA10860 nsv179788 20 17482441 17482524 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198366 M 24 "" nsv520496 20 17485312 17505717 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv675175,nssv671871 M 2026 2 0 "" nsv3311 20 17523306 17555900 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4526 S 9 1 0 "" NA12878 nsv458943 20 17538673 17559399 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535797 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00515 nsv519542 20 17539579 17577162 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv672595,nssv661150,nssv656786,nssv680974,nssv694015,nssv679781,nssv660439 M 2026 0 7 "" nsv527274 20 17566824 17579573 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703684 S 2026 0 1 "" nsv180652 20 17587974 17588033 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv199230 M 24 "" nsv833932 20 17732021 17888562 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454997 S 95 1 0 "" nsv3312 20 17795120 17825901 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5870,nssv1590,nssv6935 M 9 3 0 "" NA12156,NA19129,NA19240 nsv179089 20 17822918 17823580 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197667 M 24 "" nsv458944 20 17848087 17954706 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535798 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01365 nsv458945 20 17934058 17967274 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535799 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00072 nsv179918 20 17937348 17944918 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198496 M 24 "" nsv833933 20 17958043 18135246 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454998 S 95 1 0 "" nsv179244 20 18138760 18139335 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197822 M 24 "" dgv1316e1 20 18197877 18221632 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1011,essv7953 M 271 0 0 "" NA19203 esv2751911 20 18197877 18244500 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6983597,essv6983598 M 771 1 0 "" BEC_671 dgv92n6 20 18206043 18207463 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv180371,nsv179595 M 24 "" nsv509763 20 18227668 18312108 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621123 S 4 1 0 "" NA15510 nsv510485 20 18246162 18252162 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618456,nssv624244,nssv622315 M 4 0 3 "" CHM,NA10860,NA18994 nsv3313 20 18315321 18345677 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5873 S 9 1 0 "" NA19129 nsv523362 20 18328775 18362356 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699111 S 2026 0 1 "" nsv178568 20 18552552 18555227 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197146 M 24 "" nsv178936 20 18672333 18682251 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197514 M 24 "" nsv833934 20 18706890 18886721 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1454999 S 95 0 1 "" nsv833935 20 18824812 19024908 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455000 S 95 1 0 "" nsv180157 20 18931907 18931988 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198735 M 24 "" nsv179057 20 19009431 19009743 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197635 M 24 "" nsv518843 20 19047035 19049697 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696297 S 2026 0 1 "" nsv3314 20 19057012 19090705 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7659 S 9 1 0 "" NA12156 nsv458946 20 19096942 19110559 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535800 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00472 nsv520194 20 19100612 19110559 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697273 S 2026 0 1 "" nsv833937 20 19278801 19473952 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455002,nssv1455001 M 95 2 0 "" nsv3315 20 19330701 19341421 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7660 S 9 0 1 "" NA12156 nsv527125 20 19407328 19424765 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703510 S 2026 0 1 "" nsv833938 20 19446369 19612390 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455003 S 95 0 1 "" nsv3316 20 19519841 19553812 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3060 S 9 1 0 "" NA18555 nsv3317 20 19612139 19645922 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5874 S 9 1 0 "" NA19129 nsv179505 20 19693588 19697566 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198083 M 24 "" nsv833939 20 19743950 19912356 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455004 S 95 1 0 "" nsv817888 20 19814572 19822222 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416985,nssv1416986 M 112 2 0 "" NA19138,NA19139 nsv3318 20 19823138 19856945 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5875 S 9 1 0 "" NA19129 nsv179259 20 19856801 19866731 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197837 M 24 "" nsv3319 20 19893440 19939210 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6936 S 9 0 1 "" NA12156 nsv180590 20 19930033 19932237 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv199168 M 24 "" nsv179610 20 19960662 19961103 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198188 M 24 "" nsv525682 20 19978870 19981319 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701840 S 2026 0 1 "" nsv3320 20 19979859 20012166 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10286 S 9 1 0 "" NA18956 nsv517467 20 19980998 19983297 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv693939,nssv689179,nssv652346,nssv674983,nssv665497,nssv652102 M 2026 0 6 "" nsv3322 20 19992095 20036803 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7661 S 9 0 1 "" NA12156 nsv525824 20 19996865 19999890 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702013 S 2026 0 1 "" nsv180272 20 20387513 20387513 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198850 M 24 "" nsv3323 20 20413991 20447553 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3061 S 9 1 0 "" NA18555 nsv3324 20 20693607 20728204 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3062 S 9 1 0 "" NA18555 nsv521753 20 20809464 20812490 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694519 S 2026 0 1 "" nsv523522 20 20925792 20933138 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699295 S 2026 1 0 "" nsv178665 20 20934406 20934406 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197243 M 24 "" nsv180189 20 20974695 20974695 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198767 M 24 "" nsv833940 20 20984416 21147266 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455005 S 95 1 0 "" nsv3325 20 21014147 21047805 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7662 S 9 1 0 "" NA12156 nsv3326 20 21055390 21058605 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10287 S 9 1 0 "" NA18956 nsv179410 20 21210406 21212826 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197988 M 24 "" nsv179550 20 21305917 21306199 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198128 M 24 "" nsv833941 20 21322304 21504861 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455006 S 95 1 0 "" nsv180353 20 21502213 21502213 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198931 M 24 "" nsv3327 20 21529725 21562181 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7663 S 9 0 1 "" NA12156 nsv3328 20 21578500 21613691 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1592 S 9 1 0 "" NA19240 nsv179191 20 21649993 21649993 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197769 M 24 "" nsv179254 20 21650250 21650250 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197832 M 24 "" nsv180146 20 21709548 21709808 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198724 M 24 "" nsv3329 20 21733008 21746599 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2330 S 9 1 0 "" NA18555 nsv3330 20 21749674 21782084 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10288 S 9 1 0 "" NA18956 dgv93n6 20 21797903 21798190 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv179469,nsv179603 M 24 "" nsv179427 20 22011652 22011811 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198005 M 24 "" nsv833942 20 22231122 22388749 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455008,nssv1455007 M 95 2 0 "" nsv3331 20 22234070 22266816 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6937 S 9 1 0 "" NA12156 nsv437838 20 22271038 22305152 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467719 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18854 nsv9792 20 22272471 22278867 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25022,nssv26126 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18853,NA19173 nsv517646 20 22273574 22275414 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv661718,nssv680375,nssv670482,nssv652661,nssv655151,nssv699075 M 2026 0 6 "" nsv817889 20 22273574 22275414 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417953,nssv1416815,nssv1416615,nssv1416617,nssv1416816,nssv1417952 M 112 0 6 "" NA18853,NA18854,NA19160,NA19161,NA19172,NA19173 nsv3333 20 22430098 22455587 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9864 S 9 1 0 "" NA18507 nsv178746 20 22434165 22434248 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197324 M 24 "" nsv833943 20 22605016 22651454 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455021,nssv1455009,nssv1455012,nssv1455014,nssv1455013,nssv1455015,nssv1455016,nssv1455018,nssv1455017,nssv1455019,nssv1455020,nssv1455010,nssv1455011 M 95 13 0 "" nsv178857 20 22641441 22648741 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197435 M 24 "" nsv528221 20 22680749 22715280 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704782 S 2026 1 0 "" nsv520547 20 22715280 22719404 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697479 S 2026 0 1 "" nsv3334 20 22721462 22766362 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7665 S 9 0 1 "" NA12156 nsv3335 20 22738160 22773314 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1593 S 9 1 0 "" NA19240 nsv510782 20 22754573 22855739 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622797 S 4 0 1 "" NA18994 nsv524981 20 22959468 22969597 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701010 S 2026 0 1 "" nsv520810 20 22964970 22965082 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv675703,nssv676869,nssv686681 M 2026 0 3 "" nsv482065 20 22974271 22978301 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558426 S 1 1 0 "" KB1 dgv1317e1 20 22977404 23127604 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv792,essv23961 M 271 0 0 "" NA12814 nsv526474 20 23013209 23021904 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702780 S 2026 0 1 "" essv8907 20 23094607 23122394 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19171 nsv179251 20 23116344 23124309 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197829 M 24 "" nsv515646 20 23117926 23122214 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv678731,nssv656338,nssv657418,nssv657280,nssv691912,nssv657099,nssv669381,nssv666003,nssv654477,nssv682095,nssv693062,nssv661495,nssv659719,nssv664951,nssv656284,nssv679998,nssv664232,nssv672052,nssv662534 M 2026 0 19 "" dgv1318e1 20 23118731 23127604 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv13214,essv13404,essv13366 M 271 0 0 "" NA18872,NA19120,NA19159 nsv458948 20 23182699 23240849 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535801 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01157 nsv521751 20 23272651 23273047 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694051 S 2026 0 1 "" nsv523998 20 23353281 23354519 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699858 S 2026 0 1 "" nsv458949 20 23374648 23517400 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535802 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01273 nsv180676 20 23553435 23553502 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv199254 M 24 "" nsv458950 20 23590427 23669992 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535803 S 1557 0 1 "" NINDS_73 nsv458952 20 23592387 23723819 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535805 S 1557 1 0 "" NINDS_265 nsv482066 20 23614277 23617662 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558427 S 1 1 0 "" KB1 nsv518208 20 23630810 23685681 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695632 S 2026 1 0 "" esv33509 20 23653081 23725052 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv92617 S 51 1 0 "" 22233 nsv458953 20 23679412 23756324 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535806 S 1557 0 1 "" 1780854017_A nsv515880 20 23679494 23688161 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv666080,nssv670802,nssv665129,nssv673380,nssv693288 M 2026 0 5 "" nsv3336 20 23752081 23796943 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5876 S 9 0 1 "" NA19129 nsv833944 20 23754288 23969865 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455024,nssv1455022,nssv1455023 M 95 3 0 "" nsv522873 20 23851973 26063510 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698528 S 2026 1 0 "" nsv9793 20 23887613 24682850 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27899,nssv26040,nssv27694 M 31 1 2 Samples from several populations that are part of the HapMap project. "" NA18537,NA18860,NA18972 nsv3337 20 23963931 23997842 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3063 S 9 1 0 "" NA18555 nsv833945 20 24111437 24297462 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455025 S 95 0 1 "" nsv3338 20 24184464 24218532 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7666 S 9 1 0 "" NA12156 nsv179233 20 24197581 24198414 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197811 M 24 "" nsv833946 20 24268375 24438702 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455026 S 95 1 0 "" nsv3339 20 24279658 24312794 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7667 S 9 1 0 "" NA12156 nsv180101 20 24321079 24321079 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198679 M 24 "" nsv515713 20 24358195 24373987 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv661108,nssv662380,nssv670917,nssv664507,nssv668815 M 2026 3 2 "" nsv458954 20 24358195 24379225 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535807 S 1557 1 0 "" 1782681114_A nsv442483 20 24366791 24372700 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv178771 20 24440791 24446267 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197349 M 24 "" nsv179076 20 24490767 24490846 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197654 M 24 "" nsv524920 20 24587916 24631554 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700932 S 2026 1 0 "" nsv523138 20 24631554 24634375 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698843 S 2026 0 1 "" nsv179724 20 24821665 24821729 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198302 M 24 "" nsv178953 20 24821719 24821783 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197531 M 24 "" nsv507906 20 24828298 24834298 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620687,nssv623304,nssv619272 M 4 3 0 "" NA10860,NA15510,NA18994 nsv510783 20 24837192 24889933 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617442 S 4 0 1 "" CHM nsv518411 20 24845355 24846856 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695843 S 2026 0 1 "" nsv524921 20 24845355 24880028 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700933 S 2026 1 0 "" nsv510486 20 24909202 24915202 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622316,nssv624245,nssv621498 M 4 0 3 "" NA10860,NA15510,NA18994 nsv179079 20 25058876 25058950 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197657 M 24 "" nsv3340 20 25108137 25138540 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7668 S 9 0 1 "" NA12156 nsv833948 20 25179726 25358540 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455027 S 95 0 1 "" nsv178907 20 25397119 25397887 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197485 M 24 "" nsv3341 20 25470665 25480427 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1594 S 9 1 0 "" NA19240 nsv3342 20 25541853 25575433 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1595 S 9 1 0 "" NA19240 nsv525033 20 25636001 25678968 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701075 S 2026 1 0 "" dgv1319e1 20 25649992 26015566 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv11240,essv902,essv20025,essv20268,essv24650 M 271 0 0 "" NA07048,NA11829,NA12144,NA19000,NA19204 esv363 20 25649992 26267569 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 "" nsv7340 20 25702112 26056527 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9596,nssv9365,nssv10289,nssv6938 M 9 0 0 "" NA12156,NA18507,NA18517,NA18956 nsv9794 20 25713986 25774310 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25047,nssv27690,nssv26079,nssv28609,nssv27705,nssv27121,nssv24779,nssv26060,nssv28610,nssv24795,nssv25300,nssv27698,nssv25275,nssv27553,nssv24820 M 31 0 9 Samples from several populations that are part of the HapMap project. "" NA07048,NA18502,NA18504,NA18537,NA18563,NA18853,NA18975,NA19132,NA19221 nsv510784 20 25719629 25781607 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617443,nssv620163 M 4 0 2 "" CHM,NA15510 nsv9795 20 25780369 25799689 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27905,nssv27712,nssv25069,nssv28641 M 31 3 1 Samples from several populations that are part of the HapMap project. "" NA18502,NA18552,NA18860,NA19221 nsv511064 20 25781607 25932085 OTHER Inversion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622430 S 4 0 0 "" NA10860 nsv515881 20 25812851 25870993 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv662081,nssv671872,nssv672629,nssv674537,nssv667772,nssv678275,nssv701855,nssv665130 M 2026 8 0 "" dgv1320e1 20 25817609 26072099 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1906,essv15134,essv4850,essv20935 M 271 0 0 "" NA12801,NA18540,NA18976,NA19129 nsv9796 20 25892188 25927608 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25094,nssv28642 M 31 1 1 Samples from several populations that are part of the HapMap project. "" NA18552,NA19221 nsv9797 20 25938371 25999189 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25325,nssv27749,nssv27763,nssv27131,nssv26117,nssv26098,nssv27756,nssv25072,nssv24804,nssv28644,nssv24870,nssv24845,nssv28643,nssv27561 M 31 0 9 Samples from several populations that are part of the HapMap project. "" NA07048,NA18502,NA18504,NA18537,NA18563,NA18853,NA18975,NA19132,NA19221 nsv9798 20 26002382 26011382 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26486 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19144 dgv1321e1 20 26006100 26072099 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv15324,essv12278,essv12853 M 271 0 0 "" NA18862,NA19101,NA19120 dgv1322e1 20 26006100 26181848 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv4039,essv17906 M 271 0 0 "" NA12003,NA18635 essv21671 20 26006100 26267569 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12248 dgv509n27 20 26033338 26194086 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv458957,nsv458958,nsv458955,nsv458956 M 1557 4 0 "" 1780862057_A,HGDP00187,HGDP00602,HGDP00924 nsv458959 20 26094163 26194086 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535812 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01076 esv33036 20 26130045 26168912 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98822,essv101305,essv99990 M 51 3 0 "" 21606,21805,22086 nsv9799 20 26135878 26139877 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24329,nssv25862,nssv27171,nssv24829,nssv24652,nssv27911,nssv21905,nssv28645,nssv26145,nssv22609 M 31 10 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10847,NA10863,NA12740,NA18504,NA18572,NA18860,NA19173,NA19221 nsv833949 20 26145923 26262296 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455030,nssv1455029,nssv1455028 M 95 2 1 "" nsv9800 20 26147127 26168911 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27702,nssv27118,nssv22510,nssv25097,nssv26500,nssv25610,nssv21935,nssv25624,nssv25600 M 31 0 9 Samples from several populations that are part of the HapMap project. "" NA10847,NA11830,NA12802,NA18853,NA18972,NA18980,NA19007,NA19144,NA19240 esv32633 20 26168380 26172977 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv96018 S 51 0 1 "" 22127 nsv519490 20 26172651 26257255 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv656460,nssv687215,nssv656401,nssv658126,nssv687870,nssv658882,nssv693910,nssv662169,nssv675939,nssv691264,nssv661412,nssv675506,nssv677451,nssv662535 M 2026 0 14 "" nsv511065 20 26202784 26244873 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622431 S 4 0 0 "" NA10860 nsv9801 20 26206531 28123480 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22301,nssv25883 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA12740,NA12872 dgv1323e1 20 28033231 28197751 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv15064,essv20912 M 271 0 0 "" NA12801,NA19129 dgv1324e1 20 28033231 28267569 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1911,essv21706,essv9933,essv1355,essv4866,essv7774,essv691,essv12825,essv5381,essv2035,essv7600,essv2174,essv6982,essv9368,esv558,essv23931,essv15655,essv21311,essv5535,essv380 M 271 0 0 "" NA12248,NA12814,NA12878,NA18529,NA18540,NA18542,NA18545,NA18563,NA18612,NA18853,NA18912,NA18949,NA18960,NA18971,NA18975,NA18976,NA19007,NA19120,NA19145 nsv442779 20 28034013 28119552 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv833950 20 28085815 28252086 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455031,nssv1455032 M 95 2 0 "" essv9486 20 28106854 28244356 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19154 nsv9803 20 28124462 28149624 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27770,nssv28646,nssv25633,nssv25350 M 31 4 0 Samples from several populations that are part of the HapMap project. "" NA11830,NA18502,NA18563,NA19221 nsv9804 20 28182980 28191625 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25904 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA12740 nsv9805 20 28193683 29341567 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26514,nssv24925 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA18975,NA19144 nsv179416 20 29270756 29274157 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197994 M 24 "" nsv833951 20 29297109 29341866 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455036,nssv1455043,nssv1455038,nssv1455037,nssv1455042,nssv1455039,nssv1455041,nssv1455035,nssv1455034,nssv1455040,nssv1455033 M 95 1 10 "" nsv458960 20 29297270 29376513 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535813 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01199 nsv458961 20 29357162 29739567 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535814 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00956 nsv3344 20 29367867 29413611 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6939 S 9 0 1 "" NA12156 esv33926 20 29506146 29514447 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99996,essv96408 M 51 0 2 "" 22086,22371 nsv3345 20 29600517 29645410 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7669 S 9 0 1 "" NA12156 nsv179840 20 29681560 29685370 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198418 M 24 "" nsv3346 20 29841456 29872807 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10290 S 9 1 0 "" NA18956 nsv833952 20 29906965 30100964 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455044 S 95 1 0 "" nsv3347 20 29923143 29952988 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10291,nssv9865 M 9 2 0 "" NA18507,NA18956 nsv817890 20 29941937 29945359 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416513,nssv1416514 M 112 2 0 "" NA18515,NA18517 nsv517635 20 29941937 29953523 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv667406,nssv680087,nssv673678,nssv656705,nssv654671,nssv693940,nssv684440,nssv679803,nssv689761,nssv686876,nssv671445,nssv677923,nssv670613,nssv660836,nssv664855,nssv688452,nssv686164,nssv690074,nssv661413,nssv680714,nssv658825,nssv663173,nssv682885,nssv675940,nssv666210,nssv679714,nssv681379,nssv668015,nssv688796,nssv673713,nssv666155,nssv659613,nssv691064,nssv682540,nssv652629 M 2026 35 0 "" nsv3348 20 30003605 30048321 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7670 S 9 0 1 "" NA12156 nsv833953 20 30074056 30256242 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455045 S 95 0 1 "" nsv817891 20 30103091 30116038 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417703 S 112 1 0 "" NA18999 nsv833954 20 30174844 30352253 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455049,nssv1455051,nssv1455050,nssv1455048,nssv1455047,nssv1455046 M 95 0 6 "" nsv3349 20 30247599 30282935 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1596 S 9 1 0 "" NA19240 nsv509764 20 30330885 30398155 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623823 S 4 1 0 "" NA18994 nsv179526 20 30350893 30351749 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198104 M 24 "" nsv178620 20 30362901 30363205 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197198 M 24 "" nsv509765 20 30471843 30540712 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623824 S 4 1 0 "" NA18994 nsv523511 20 30512043 30689016 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699283 S 2026 0 1 "" nsv521347 20 30512043 30732585 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697955 S 2026 1 0 "" nsv833955 20 30528643 30631518 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455052 S 95 0 1 "" nsv509766 20 30593387 30724063 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623825 S 4 1 0 "" NA18994 nsv178820 20 30629605 30637982 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197398 M 24 "" nsv516018 20 30647942 30718645 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv663676,nssv702315,nssv652419 M 2026 0 3 "" nsv833956 20 30674533 30865824 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455053 S 95 0 1 "" nsv833957 20 30806783 30959459 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455056,nssv1455055,nssv1455054 M 95 1 2 "" nsv833959 20 30881071 31034401 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455057 S 95 0 1 "" nsv179909 20 30886026 30886831 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198487 M 24 "" nsv179907 20 30886848 30895923 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198485 M 24 "" nsv179963 20 30950889 30957226 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198541 M 24 "" nsv178560 20 30952959 30953029 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197138 M 24 "" dgv1325e1 20 30959468 31211827 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv13571,essv1730,essv14152,essv16030,essv10063,essv12687,essv18645,essv21715,essv15602,essv8724,essv16673,essv20373,essv9873,essv17632,essv11882,essv7810,essv16091,essv23602,essv4037,esv321,essv6262,essv13096,essv9359,essv13423,essv24585,essv8340,essv18140,essv9456,essv1284,essv16291,essv7737,essv4157,essv17073,essv14958,essv17155,essv10846,essv8798,essv16772,essv13195,essv16897,essv10644,essv10897,essv11504,essv14555,essv20674,essv15501,essv3991 M 271 0 0 "" NA10830,NA11992,NA11993,NA12006,NA12234,NA12248,NA12753,NA12892,NA18500,NA18501,NA18505,NA18508,NA18555,NA18558,NA18633,NA18635,NA18636,NA18852,NA18853,NA18855,NA18858,NA18870,NA18871,NA18872,NA18970,NA18995,NA18997,NA19092,NA19099,NA19100,NA19102,NA19137,NA19140,NA19142,NA19145,NA19160,NA19161,NA19171,NA19172,NA19173,NA19192,NA19202,NA19205,NA19208,NA19209,NA19221 nsv3350 20 30980263 31002179 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4527 S 9 0 1 "" NA12878 nsv523523 20 31017374 31022383 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699296 S 2026 1 0 "" essv2996 20 31039788 31169289 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18981 nsv3351 20 31065762 31089000 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10292 S 9 1 0 "" NA18956 nsv3352 20 31073600 31118417 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7671 S 9 0 1 "" NA12156 nsv458964 20 31204465 31281265 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535816 S 1557 0 1 "" 1798860570_A esv2751912 20 31231086 31300124 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6985340,essv6985341,essv6989489 M 771 0 1 "" SPC_147 nsv518678 20 31340342 31341559 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696127 S 2026 0 1 "" dgv94n6 20 31372298 31379086 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv179158,nsv178787,nsv180452 M 24 "" nsv522690 20 31478697 31603948 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv706100 S 2026 0 1 "" nsv833960 20 31620526 31739527 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455058 S 95 0 1 "" nsv833961 20 31656847 31888459 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455059 S 95 0 1 "" nsv482067 20 31717965 31719991 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558428 S 1 1 0 "" KB1 nsv3353 20 31761962 31806760 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7672 S 9 0 1 "" NA12156 nsv3355 20 31778438 31811287 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6940 S 9 1 0 "" NA12156 nsv180563 20 31786493 31790439 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv199141 M 24 "" nsv518926 20 31792629 31953555 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696391 S 2026 1 0 "" nsv458965 20 31831364 31890503 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535817 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01364 nsv3356 20 31954569 31999620 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7673 S 9 0 1 "" NA12156 nsv3357 20 32243712 32296412 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1597,nssv4660,nssv2331 M 9 0 3 "" NA18555,NA19129,NA19240 nsv510785 20 32253917 32298682 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622798,nssv619008 M 4 0 2 "" NA10860,NA18994 nsv3358 20 32330016 32374994 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7674 S 9 0 1 "" NA12156 nsv179054 20 32579493 32579825 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197632 M 24 "" nsv3359 20 32583039 32627697 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7675 S 9 0 1 "" NA12156 nsv3360 20 32613777 32648911 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1598 S 9 1 0 "" NA19240 nsv180489 20 32705521 32707945 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv199067 M 24 "" nsv3361 20 32789483 32823214 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7676 S 9 1 0 "" NA12156 dgv95n6 20 32940834 32940997 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv178617,nsv178727 M 24 "" nsv833962 20 32979152 33164714 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455062,nssv1455060,nssv1455061 M 95 0 3 "" nsv3362 20 33029966 33062189 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1599 S 9 1 0 "" NA19240 nsv180412 20 33149150 33149223 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198990 M 24 "" nsv3363 20 33360823 33391947 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4528 S 9 1 0 "" NA12878 nsv833963 20 33381600 33549921 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455063 S 95 1 0 "" nsv178542 20 33439526 33447197 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197120 M 24 "" nsv179166 20 33455922 33461921 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197744 M 24 "" nsv3364 20 33561020 33594772 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4530 S 9 1 0 "" NA12878 nsv517785 20 33608160 33616196 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv654499,nssv653243,nssv680799,nssv663525,nssv666260,nssv694016 M 2026 0 6 "" nsv526796 20 33608160 33633588 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703150 S 2026 0 1 "" nsv178794 20 33623480 33632019 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197372 M 24 "" nsv526188 20 33627877 34070415 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702450 S 2026 1 0 "" nsv3366 20 33879828 33904094 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9598 S 9 1 0 "" NA18507 nsv522947 20 33896975 34023940 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698614 S 2026 1 0 "" nsv3367 20 33911309 33944643 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7677 S 9 1 0 "" NA12156 nsv833964 20 33989554 34143087 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455066,nssv1455064,nssv1455065 M 95 0 3 "" nsv833965 20 34137033 34335940 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455067,nssv1455068 M 95 0 2 "" nsv3368 20 34172658 34207112 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4531 S 9 1 0 "" NA12878 nsv3369 20 34209022 34244013 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1600 S 9 1 0 "" NA19240 nsv833966 20 34472397 34529525 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455070,nssv1455069 M 95 1 1 "" nsv521346 20 34480334 34484621 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694435 S 2026 0 1 "" nsv833967 20 34539244 34720686 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455071 S 95 0 1 "" nsv7341 20 34857376 34871738 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6941 S 9 0 0 "" NA12156 nsv521137 20 35017002 35018836 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697809 S 2026 0 1 "" nsv178626 20 35231723 35233420 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197204 M 24 "" nsv510487 20 35232218 35238218 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624246,nssv621499 M 4 0 2 "" NA15510,NA18994 nsv519722 20 35301633 35304638 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697012 S 2026 0 1 "" nsv524059 20 35310424 35528302 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699925 S 2026 0 1 "" nsv509767 20 35367394 35539416 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619843 S 4 1 0 "" NA10860 nsv458967 20 35388351 35501287 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535818 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00715 nsv523618 20 35402488 35528302 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699415 S 2026 0 1 "" nsv833968 20 35434228 35582624 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455072 S 95 1 0 "" dgv510n27 20 35438689 35509280 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv458971,nsv458969,nsv458970 M 1557 0 3 "" HGDP00864,NINDS_136,NINDS_51 nsv528371 20 35440545 35509280 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704958 S 2026 0 1 "" nsv523834 20 35440545 35515558 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699666 S 2026 1 0 "" nsv516343 20 35443071 35509280 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv673589,nssv699382,nssv663705,nssv696467,nssv680916,nssv658052,nssv667711,nssv703703,nssv686877 M 2026 1 8 "" nsv817892 20 35503067 35509990 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417570 S 112 0 1 "" NA18972 nsv3370 20 35640102 35673518 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1602 S 9 1 0 "" NA19240 dgv1326e1 20 35736026 35759976 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv13208,esv1319 M 271 0 0 "" NA19120 nsv9806 20 35736234 35739081 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25122,nssv26916,nssv27777 M 31 3 0 Samples from several populations that are part of the HapMap project. "" NA12155,NA18502,NA18853 nsv179940 20 35741254 35745055 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198518 M 24 "" nsv3371 20 35747963 35782757 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4532 S 9 1 0 "" NA12878 nsv833970 20 35879174 35971325 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455077,nssv1455075,nssv1455082,nssv1455074,nssv1455076,nssv1455080,nssv1455079,nssv1455078,nssv1455081,nssv1455073 M 95 10 0 "" nsv833971 20 35978952 36135428 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455083,nssv1455084 M 95 2 0 "" nsv833972 20 36011764 36250655 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455085 S 95 0 1 "" esv33494 20 36042191 36043147 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93740 S 51 0 1 "" 21972 nsv180347 20 36177959 36177959 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198925 M 24 "" esv35121 20 36367044 36515559 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6979845,essv6986961,essv6979846 M 771 1 0 "" NA18852 dgv1327e1 20 36367793 36539571 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv9290,esv608 M 271 0 0 "" NA18852 nsv817893 20 36370554 36513421 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417954 S 112 1 0 "" NA18852 essv13086 20 36392696 36498327 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18852 nsv9807 20 36439555 36450281 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25375 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18563 dgv511n27 20 36442880 36444682 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv458976,nsv458974,nsv458975 M 1557 0 3 "" HGDP00550,HGDP00952,HGDP00958 nsv517753 20 36442880 36444682 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv674793,nssv655814,nssv653121,nssv687365,nssv691772,nssv661932,nssv661781,nssv690532,nssv686979,nssv690327 M 2026 0 10 "" nsv458977 20 36444682 36460639 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535826 S 1557 0 1 "" NINDS_48 nsv509769 20 36455272 36539315 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623827 S 4 1 0 "" NA18994 nsv9808 20 36463099 36466037 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27709 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18972 nsv9809 20 36487773 36489733 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22639 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18572 nsv179180 20 36572685 36572997 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197758 M 24 "" nsv3372 20 36649199 36681267 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4533 S 9 1 0 "" NA12878 nsv3373 20 36903806 36944918 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv11036,nssv7678 M 9 2 0 "" NA12156,NA15510 nsv3374 20 36962413 36999439 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7679 S 9 0 1 "" NA12156 nsv833973 20 37030939 37203105 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455086 S 95 0 1 "" nsv507907 20 37148705 37154705 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623305 S 4 1 0 "" NA18994 nsv833974 20 37251375 37414264 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455087 S 95 1 0 "" nsv3375 20 37263696 37295391 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1603 S 9 1 0 "" NA19240 nsv522247 20 37272154 37310186 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695027 S 2026 1 0 "" nsv180428 20 37388143 37388143 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv199006 M 24 "" nsv180055 20 37388203 37388203 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198633 M 24 "" nsv833975 20 37476876 37649817 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455088,nssv1455089 M 95 1 1 "" nsv180417 20 37497382 37504454 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198995 M 24 "" dgv96n6 20 37771047 37771198 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv179345,nsv179434 M 24 "" nsv519572 20 37862325 37870483 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv656921,nssv686450 M 2026 2 0 "" nsv178772 20 38057926 38066014 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197350 M 24 "" nsv817894 20 38076193 38078497 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416361 S 112 0 1 "" NA19141 nsv442484 20 38078172 38080421 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv180211 20 38146598 38146886 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198789 M 24 "" nsv833976 20 38231284 38408361 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455091,nssv1455090,nssv1455093,nssv1455092 M 95 2 2 "" nsv179737 20 38302923 38302923 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198315 M 24 "" nsv179573 20 38302927 38302927 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198151 M 24 "" nsv3377 20 38368980 38401897 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5877 S 9 1 0 "" NA19129 nsv517474 20 38488446 38500329 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv653997,nssv663400 M 2026 0 2 "" nsv833977 20 38489245 38653425 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455094 S 95 1 0 "" nsv178956 20 38648273 38648395 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197534 M 24 "" nsv833978 20 38746709 38943638 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455095 S 95 1 0 "" nsv180697 20 38778135 38780119 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv199275 M 24 "" nsv833979 20 38860194 39039880 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455096 S 95 1 0 "" nsv3378 20 39027674 39062227 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3064 S 9 1 0 "" NA18555 nsv3379 20 39038395 39051966 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7680 S 9 0 1 "" NA12156 nsv833982 20 39048541 39172885 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455097 S 95 0 1 "" nsv833983 20 39114015 39275069 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455098,nssv1455100,nssv1455099 M 95 0 3 "" nsv833984 20 39301457 39479846 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455101 S 95 0 1 "" nsv3380 20 39313603 39346181 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6942 S 9 0 1 "" NA12156 nsv3381 20 39358740 40199110 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2332,nssv7681 M 9 0 2 "" NA12156,NA18555 dgv245n21 20 39397744 39421666 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv527136,nsv516924 M 2026 0 9 "" nsv180465 20 39440198 39443841 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv199043 M 24 "" nsv510786 20 39506366 39575813 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619009 S 4 0 1 "" NA10860 nsv3382 20 39635381 39667400 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4534 S 9 1 0 "" NA12878 nsv178957 20 39641207 39641490 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197535 M 24 "" nsv833985 20 39760108 39943215 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455102 S 95 0 1 "" nsv438310 20 39790436 39794267 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470773,nssv470772 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA10831,NA12155 esv2751913 20 39856396 40702735 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6988535,essv6986167,essv6986168,essv6982426 M 771 1 0 "" BEC_44 nsv833986 20 39902316 40061779 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455103,nssv1455104 M 95 2 0 "" nsv518536 20 39965891 39967616 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695980 S 2026 0 1 "" dgv246n21 20 40017334 40019859 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv527802,nsv525139 M 2026 0 2 "" nsv180358 20 40275320 40275320 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198936 M 24 "" nsv179776 20 40340325 40340376 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198354 M 24 "" nsv523080 20 40383245 40398214 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698771 S 2026 1 0 "" nsv516291 20 40386328 40403504 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv667382,nssv673904,nssv697005,nssv685667,nssv667948,nssv695553 M 2026 4 2 "" nsv833987 20 40441077 40618328 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455105 S 95 0 1 "" nsv458978 20 40608107 40664177 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535827 S 1557 0 1 "" 1780854449_A nsv519654 20 40608107 40688107 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv660473,nssv694396,nssv657383,nssv658994,nssv660034 M 2026 0 5 "" dgv247n21 20 40617423 40731107 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv526415,nsv528161 M 2026 0 2 "" nsv458979 20 40644160 40676650 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535828 S 1557 0 1 "" 1780854103_A nsv833988 20 40661202 40813335 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455106 S 95 0 1 "" nsv458981 20 40674114 40724350 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535829 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00135 dgv1328e1 20 40686319 40710511 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv15932,essv10174,esv987 M 271 0 0 "" NA18515,NA18516 nsv817896 20 40688107 40711739 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416515,nssv1416517 M 112 0 2 "" NA18515,NA18516 nsv517647 20 40690870 40711739 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv652662,nssv688616,nssv668558,nssv660899,nssv685694,nssv667067 M 2026 0 6 "" nsv458982 20 40702735 40736257 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535830 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00356 nsv522445 20 40707077 40713729 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705803 S 2026 0 1 "" nsv523956 20 40713729 40724350 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699806 S 2026 0 1 "" nsv3383 20 40772303 40801967 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7682 S 9 1 0 "" NA12156 esv33863 20 41162911 41163648 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100543 S 51 0 1 "" 22298 esv2751914 20 41178000 41323867 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6981528,essv6981527,essv6981526,essv6985597,essv6985598 M 771 1 0 "" BEC_293 nsv525353 20 41219453 41220578 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701472 S 2026 0 1 "" nsv3384 20 41299043 41331457 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10293 S 9 1 0 "" NA18956 nsv180012 20 41440141 41448353 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198590 M 24 "" nsv180182 20 41458027 41459224 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198760 M 24 "" nsv179929 20 41552131 41558683 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198507 M 24 "" nsv179227 20 41556607 41558683 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197805 M 24 "" nsv3385 20 41703127 41738961 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2333 S 9 0 1 "" NA18555 nsv180297 20 41768788 41769235 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198875 M 24 "" nsv833989 20 41808847 42009673 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455107 S 95 0 1 "" nsv179007 20 41846443 41847604 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197585 M 24 "" nsv510488 20 41853162 41859162 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618457 S 4 0 1 "" CHM nsv523407 20 41904898 41910498 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699158 S 2026 0 1 "" nsv509770 20 42059479 42089190 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621124 S 4 1 0 "" NA15510 nsv524229 20 42060518 42063880 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700118 S 2026 1 0 "" dgv97n6 20 42109540 42109941 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv179271,nsv180359 M 24 "" nsv3386 20 42121857 42135634 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7683 S 9 0 1 "" NA12156 nsv521587 20 42151620 42158000 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698204 S 2026 0 1 "" nsv521093 20 42153551 42158000 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv687987,nssv681910,nssv698634 M 2026 0 3 "" nsv178769 20 42196360 42196775 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197347 M 24 "" nsv179208 20 42219873 42219943 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197786 M 24 "" nsv507908 20 42267766 42273766 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623306 S 4 1 0 "" NA18994 dgv98n6 20 42277832 42282267 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv179392,nsv178849 M 24 "" nsv458983 20 42278543 42291190 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535831 S 1557 0 1 "" NINDS_45 nsv3388 20 42328480 42358583 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5878 S 9 1 0 "" NA19129 nsv180617 20 42346742 42353609 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv199195 M 24 "" nsv3389 20 42366483 42400968 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4535 S 9 1 0 "" NA12878 nsv3390 20 42703012 42769954 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1604,nssv7684 M 9 0 2 "" NA12156,NA19240 nsv3391 20 42720647 42774937 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1605,nssv6943 M 9 2 0 "" NA12156,NA19240 nsv458985 20 42768988 42841844 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535833 S 1557 1 0 "" NINDS_91 nsv179790 20 42783593 42793509 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198368 M 24 "" nsv3392 20 42909384 42937701 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9866 S 9 1 0 "" NA18507 nsv525844 20 42919355 42919440 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702037 S 2026 0 1 "" nsv518547 20 42959551 43004425 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695990 S 2026 1 0 "" nsv179332 20 43120144 43128236 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197910 M 24 "" nsv482068 20 43269088 43271822 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558429 S 1 1 0 "" KB1 nsv525186 20 43555444 43557963 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701264 S 2026 0 1 "" esv32588 20 43637797 43641213 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97898,essv99874,essv94232 M 51 0 3 "" 21837,22086,22394 nsv7342 20 43669317 43696917 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5879 S 9 0 0 "" NA19129 nsv525287 20 43765712 43766466 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701392 S 2026 0 1 "" esv2751915 20 43770130 43811618 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6989753,essv6983205 M 771 0 1 "" BEC_555 nsv458986 20 43771100 43811984 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535834 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00522 esv33602 20 43784136 43812280 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98893,essv92783,essv100025,essv94209 M 51 0 4 "" 21606,21944,22086,22394 esv2751916 20 43784345 43833858 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6981008,essv6981009 M 771 0 1 "" BEC_336 dgv512n27 20 43788634 43811984 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv458991,nsv458990,nsv458992,nsv458989,nsv458987,nsv458988 M 1557 0 6 "" HGDP00795,HGDP00797,HGDP00799,HGDP00806,HGDP01079,HGDP01376 nsv517420 20 43788634 43811984 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv670540,nssv692783,nssv664527,nssv677791,nssv658933,nssv691524,nssv666368,nssv651968,nssv670736,nssv671022,nssv689180,nssv678349,nssv676825,nssv659051 M 2026 0 14 "" nsv833990 20 43833556 44008890 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455109,nssv1455108 M 95 0 2 "" nsv458993 20 43904633 43942281 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535841 S 1557 0 1 "" 1780862380_A nsv517296 20 43916632 44027982 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698230,nssv653797,nssv688087,nssv674095,nssv661151,nssv692213,nssv662766 M 2026 0 7 "" nsv179037 20 43932092 43932385 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197615 M 24 "" nsv833991 20 43947677 44130754 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455110 S 95 0 1 "" nsv482069 20 43950674 43953308 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558430 S 1 1 0 "" KB1 nsv3393 20 43965159 43975272 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7685 S 9 0 1 "" NA12156 nsv180559 20 44024861 44032803 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv199137 M 24 "" dgv1329e1 20 44126322 44398283 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv653,essv8803,essv10380,essv1832,essv3006,essv12453,essv23927,essv1252,essv10738,essv9249,essv18639,essv23195,essv22043,essv22134,essv22671,essv9444,essv7118,essv7701,essv9972,essv7779,essv3085,essv19778,essv7539,essv23361,essv13181,essv20208,essv24471,essv19195,essv7334,essv4813,essv21708,essv5368,essv15556,essv22305,essv23679,essv15686,essv16634,essv23469,essv11033,essv9886,essv22903,essv11879,essv11694,essv20421,essv7232,essv14352,essv22999,essv11775,essv8949,essv4379,essv21026,essv14556,essv4068,essv6271,essv14188,essv20631,essv4986,essv13435,essv17611,esv254,essv24518,essv9313,essv8117,essv11224,essv10657,essv16156,essv6343,essv24588,essv13015,essv10938,essv14116,essv2016,essv17088,essv18118,essv1187,essv18331,essv15021,essv16792,essv7424,essv9673,essv9786,essv17185,essv12697,essv2336,essv11562,essv22766,essv6818,essv24154,essv21755,essv15288,essv12653,essv21448,essv14413,essv13535,essv21234,essv16009,essv18288,essv3776,essv23614,essv1150,essv6011,essv2262,essv22596,essv2636,essv16845,essv137,essv15532,essv3960,essv10310 M 271 0 0 "" NA06985,NA06991,NA07019,NA07034,NA07056,NA07348,NA07357,NA10830,NA10835,NA10846,NA10847,NA10857,NA10863,NA11830,NA11832,NA11992,NA11993,NA11994,NA12006,NA12056,NA12154,NA12156,NA12234,NA12239,NA12248,NA12717,NA12750,NA12752,NA12753,NA12760,NA12802,NA12814,NA12865,NA18500,NA18501,NA18504,NA18505,NA18506,NA18508,NA18523,NA18537,NA18542,NA18545,NA18547,NA18563,NA18570,NA18571,NA18573,NA18579,NA18609,NA18620,NA18623,NA18633,NA18635,NA18636,NA18637,NA18853,NA18855,NA18859,NA18861,NA18863,NA18870,NA18872,NA18912,NA18913,NA18914,NA18940,NA18949,NA18951,NA18961,NA18964,NA18966,NA18967,NA18968,NA18969,NA18970,NA18975,NA18976,NA18981,NA18995,NA19094,NA19099,NA19100,NA19102,NA19128,NA19137,NA19140,NA19142,NA19143,NA19145,NA19154,NA19160,NA19171,NA19172,NA19173,NA19192,NA19194,NA19200,NA19201,NA19202,NA19204,NA19205,NA19206,NA19207,NA19208,NA19209,NA19221,NA19222 nsv833993 20 44153298 44352061 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455111 S 95 1 0 "" dgv1330e1 20 44219283 44398283 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv11110,essv20642,essv4121,essv7820,essv13072,essv13834,essv8383,essv16277,essv14728,essv10872 M 271 0 0 "" NA12892,NA18555,NA18558,NA18852,NA18854,NA18858,NA18871,NA19159,NA19161,NA19211 nsv3394 20 44356310 44405434 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5880,nssv4536 M 9 2 0 "" NA12878,NA19129 nsv9810 20 44368003 44395132 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28647 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19221 nsv9811 20 44395132 44397472 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27676 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18517 nsv520289 20 44402546 44403507 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv686183,nssv662430 M 2026 0 2 "" dgv99n6 20 44482100 44482182 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv179816,nsv179488 M 24 "" nsv833994 20 44504162 44742256 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455112 S 95 1 0 "" esv34663 20 44672300 44709100 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6979410,essv6990362 M 771 1 0 "" NA18547 nsv509771 20 44676909 44721010 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621125 S 4 1 0 "" NA15510 dgv1331e1 20 44681417 44722596 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv7627,esv1393 M 271 0 0 "" NA18547 nsv9812 20 44695122 44697227 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26927 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA12155 esv32661 20 44695573 44725930 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100029 S 51 1 0 "" 22086 nsv179106 20 44718315 44718413 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197684 M 24 "" nsv179609 20 44718487 44718587 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198187 M 24 "" nsv3395 20 44852738 44880558 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4537 S 9 1 0 "" NA12878 nsv516678 20 44864872 44867806 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv670100,nssv662277 M 2026 0 2 "" nsv458994 20 44874005 44883862 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535842 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01405 nsv510787 20 44885897 44944064 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619010 S 4 0 1 "" NA10860 nsv510788 20 44946611 45052294 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619011 S 4 0 1 "" NA10860 nsv179078 20 45174936 45175902 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197656 M 24 "" dgv1332e1 20 45195752 45227374 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1076,esv1025 M 271 0 0 "" NA18990 nsv178722 20 45197888 45198787 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197300 M 24 "" esv33497 20 45205485 45713113 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98858,essv99824 M 51 0 2 "" 21606,22086 nsv442781 20 45213513 45222336 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv179823 20 45452486 45452811 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198401 M 24 "" nsv510489 20 45555192 45561192 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621500,nssv624247 M 4 0 2 "" NA15510,NA18994 nsv833995 20 45612186 45756815 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455113 S 95 0 1 "" nsv509772 20 45613397 45636728 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618136 S 4 1 0 "" CHM nsv527945 20 45669601 45695524 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704453 S 2026 0 1 "" dgv100n6 20 45683823 45692607 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv178815,nsv178796 M 24 "" dgv1333e1 20 45701817 45957486 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv22351,essv17899,essv14631,esv189 M 271 0 0 "" NA06985,NA12003,NA19093 nsv3396 20 45750967 45753566 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5881 S 9 1 0 "" NA19129 nsv524279 20 45788727 45788999 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700178 S 2026 0 1 "" nsv3397 20 45824344 45869303 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7686 S 9 0 1 "" NA12156 nsv469534 20 45844437 46013738 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649643 M 265 0 2 Samples from several populations that are part of the HapMap project. "" nsv7344 20 45855694 45961306 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10295,nssv2335,nssv4540,nssv4538 M 9 0 0 "" NA12878,NA18555,NA18956 nsv509773 20 45870923 46061711 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623828,nssv619844,nssv619845,nssv621126,nssv621127,nssv623829 M 4 3 0 "" NA10860,NA15510,NA18994 nsv3399 20 45877338 45910900 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2334,nssv4539,nssv11037,nssv7687,nssv5882 M 9 5 0 "" NA12156,NA12878,NA15510,NA18555,NA19129 nsv9814 20 45883696 45889895 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22669,nssv27684,nssv25647 M 31 0 3 Samples from several populations that are part of the HapMap project. "" NA18517,NA18572,NA19007 nsv186 20 45889365 45905922 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv186 S 1 1 0 "" NA15510 nsv458999 20 45890171 46574928 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535846 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01412 nsv524004 20 45900322 46553388 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699864 S 2026 1 0 "" nsv3400 20 45941354 45978343 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5883,nssv10297,nssv11038,nssv9599,nssv1606,nssv4541,nssv6944,nssv2336 M 9 8 0 "" NA12156,NA12878,NA15510,NA18507,NA18555,NA18956,NA19129,NA19240 nsv187 20 45949231 45973361 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv187 S 1 1 0 "" NA15510 nsv833996 20 45976880 45997244 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455119,nssv1455118,nssv1455114,nssv1455115,nssv1455117,nssv1455116 M 95 0 6 "" nsv3401 20 45985729 46017826 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6945 S 9 1 0 "" NA12156 nsv833997 20 46237249 46425541 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455120 S 95 1 0 "" nsv3402 20 46257255 46282261 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7689 S 9 1 0 "" NA12156 nsv524493 20 46273522 46275358 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700431 S 2026 0 1 "" nsv516747 20 46274406 46274704 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694034,nssv693412,nssv662022,nssv670614,nssv655265 M 2026 0 5 "" nsv518088 20 46274704 46278473 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695501 S 2026 0 1 "" nsv3403 20 46381023 46414615 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5884 S 9 1 0 "" NA19129 nsv438311 20 46386093 46412796 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470775 S 269 0 1 Samples from several populations that are part of the HapMap project. "" NA07034 nsv178590 20 46447732 46447795 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197168 M 24 "" nsv3404 20 46485481 46494931 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1607 S 9 1 0 "" NA19240 nsv179041 20 46494693 46494758 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197619 M 24 "" nsv3405 20 46505917 46537589 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10298 S 9 1 0 "" NA18956 nsv518631 20 46537021 46553388 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696081 S 2026 0 1 "" nsv9815 20 46549463 46555527 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25119 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18552 nsv3406 20 46555967 46574360 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9867,nssv2337,nssv1608,nssv10299,nssv6946,nssv9366,nssv4542,nssv11039,nssv5885 M 9 9 0 "" NA12156,NA12878,NA15510,NA18507,NA18517,NA18555,NA18956,NA19129,NA19240 nsv509774 20 46564002 46586482 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621128,nssv623830,nssv619846 M 4 3 0 "" NA10860,NA15510,NA18994 nsv188 20 46564083 46569855 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv188 S 1 1 0 "" NA15510 nsv833998 20 46630727 46821683 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455121 S 95 0 1 "" nsv525312 20 46681464 46807465 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701420 S 2026 0 1 "" nsv178670 20 46684003 46684119 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197248 M 24 "" nsv3407 20 46842218 46875489 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7690 S 9 1 0 "" NA12156 nsv3408 20 46904799 46943233 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7691 S 9 0 1 "" NA12156 nsv516979 20 46932528 46933482 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv657299,nssv665450,nssv684027,nssv672929,nssv669973,nssv653545,nssv668592,nssv675263,nssv683621,nssv664086,nssv693289 M 2026 0 11 "" nsv817897 20 46932528 46933482 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418239,nssv1418240 M 112 0 2 "" NA19144,NA19145 nsv3411 20 47050011 47083286 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2338 S 9 1 0 "" NA18555 nsv179541 20 47250555 47250988 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198119 M 24 "" nsv437839 20 47320091 47337550 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467720 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19139 nsv509775 20 47460965 47537760 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621129 S 4 1 0 "" NA15510 nsv527882 20 47495219 47499266 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704384 S 2026 0 1 "" nsv459001 20 47521405 47527997 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535847 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00491 nsv3412 20 47635611 47637674 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3065 S 9 1 0 "" NA18555 nsv179124 20 47977143 47977222 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197702 M 24 "" nsv509776 20 48023111 48096946 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621130 S 4 1 0 "" NA15510 nsv3413 20 48067870 48098739 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10300 S 9 1 0 "" NA18956 nsv524178 20 48083796 48088423 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700059 S 2026 0 1 "" nsv833999 20 48087051 48168375 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455122 S 95 0 1 "" nsv834000 20 48087051 48213089 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455124,nssv1455125,nssv1455123 M 95 2 1 "" nsv178678 20 48206199 48206515 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197256 M 24 "" nsv521389 20 48263672 48272926 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697999 S 2026 0 1 "" nsv522713 20 48481160 48481847 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698343 S 2026 0 1 "" nsv524210 20 48481160 48482656 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700097 S 2026 0 1 "" nsv180508 20 48502021 48502077 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv199086 M 24 "" nsv179421 20 48547599 48548527 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197999 M 24 "" nsv834001 20 48675561 48870362 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455128,nssv1455126,nssv1455127 M 95 0 3 "" nsv179512 20 48749247 48756928 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198090 M 24 "" nsv523874 20 48757788 48828918 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699716 S 2026 1 0 "" nsv834002 20 48860179 49036708 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455130,nssv1455129 M 95 0 2 "" nsv518896 20 48888318 48927277 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696355 S 2026 0 1 "" esv32763 20 49039203 49047797 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99884 S 51 0 1 "" 22086 nsv179741 20 49045737 49047880 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198319 M 24 "" esv33318 20 49058203 49058998 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101475 S 51 1 0 "" 21603 esv33244 20 49058998 49059088 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv95587,essv94176 M 51 2 0 "" 21841,22394 esv32899 20 49059088 49062482 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101589 S 51 1 0 "" 21603 nsv3414 20 49070770 49102830 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2339 S 9 1 0 "" NA18555 esv2751917 20 49102100 49648347 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6988589,essv6982820,essv6982821,essv6982822,essv6986273 M 771 1 0 "" BEC_601 nsv459003 20 49166946 49194603 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535848 S 1557 0 1 "" 1780854341_A nsv3415 20 49332842 49365695 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2340 S 9 1 0 "" NA18555 nsv834004 20 49641774 49800993 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455131 S 95 0 1 "" dgv1334e1 20 49756024 49852802 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv7974,esv1021 M 271 0 0 "" NA19240 nsv527764 20 49763111 49765750 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704252 S 2026 0 1 "" nsv9816 20 49816867 49819462 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21965,nssv25925,nssv27181,nssv27784,nssv22331 M 31 5 0 Samples from several populations that are part of the HapMap project. "" NA10847,NA12740,NA12872,NA18502,NA18504 nsv518686 20 49892937 49894738 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696139 S 2026 0 1 "" nsv179096 20 49935817 49943765 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197674 M 24 "" nsv180522 20 49995179 50003766 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv199100 M 24 "" nsv180453 20 50011675 50011740 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv199031 M 24 "" nsv459004 20 50032372 50062011 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535849 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00643 nsv518923 20 50060701 50065209 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694289 S 2026 0 1 "" nsv518147 20 50060701 50068834 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695568 S 2026 1 0 "" nsv516444 20 50061203 50066879 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv658500,nssv670856,nssv661172,nssv693763,nssv689129,nssv699076,nssv668454,nssv660440 M 2026 5 3 "" nsv515528 20 50086344 50090456 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv668702,nssv690312,nssv663833,nssv685744,nssv667658,nssv666718,nssv674984,nssv675990,nssv666761,nssv685516 M 2026 0 10 "" nsv459005 20 50110836 50132712 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535850 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00925 nsv521862 20 50118060 50129256 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694052 S 2026 1 0 "" nsv817898 20 50118060 50129256 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416987 S 112 1 0 "" NA19137 nsv517332 20 50119963 50121421 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv692549,nssv694163,nssv681380,nssv651746 M 2026 0 4 "" nsv179098 20 50192598 50194335 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197676 M 24 "" esv32674 20 50202312 50202645 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99912 S 51 1 0 "" 22086 nsv179831 20 50217374 50217441 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198409 M 24 "" nsv3416 20 50341319 50385777 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2341 S 9 0 1 "" NA18555 nsv178833 20 50580278 50580278 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197411 M 24 "" nsv510490 20 50701085 50707085 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622317 S 4 0 1 "" NA10860 nsv510491 20 50747256 50753256 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621501 S 4 0 1 "" NA15510 nsv459006 20 50998680 51032449 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535851 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01362 nsv526189 20 51010207 51013811 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702451 S 2026 1 0 "" nsv834005 20 51109650 51266852 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455132 S 95 1 0 "" nsv526701 20 51204098 51213734 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703040 S 2026 0 1 "" nsv523160 20 51268772 51277141 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698869 S 2026 0 1 "" nsv519558 20 51385908 51387954 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696919 S 2026 0 1 "" nsv459007 20 51408698 51466201 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535852 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00228 nsv834006 20 51615905 51742773 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455135,nssv1455133,nssv1455134 M 95 1 2 "" nsv3417 20 51629605 51663567 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1609 S 9 1 0 "" NA19240 nsv834007 20 51647271 51837964 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455136,nssv1455138,nssv1455137 M 95 2 1 "" nsv517172 20 51709859 51722650 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv675296,nssv652744,nssv676809,nssv690644,nssv658474,nssv655862,nssv683509,nssv672568,nssv682962,nssv663623,nssv693803,nssv688107,nssv689872,nssv669807,nssv653925,nssv654807,nssv667751,nssv691190,nssv662686,nssv684209,nssv673851,nssv672227,nssv688592,nssv683400,nssv677452,nssv654258,nssv681647,nssv652870,nssv686565,nssv662733,nssv683996,nssv678417,nssv693532,nssv652963,nssv689130,nssv692151,nssv684334,nssv669216,nssv658739,nssv653435,nssv668513,nssv676610 M 2026 0 42 "" nsv518277 20 51709859 51748718 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695708 S 2026 0 1 "" nsv178618 20 51721252 51727369 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197196 M 24 "" nsv437185 20 51733766 51763460 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467066 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA12707 nsv517748 20 51737515 51748718 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv653096,nssv692281,nssv668790,nssv672484,nssv681286,nssv671007,nssv675814,nssv675565,nssv682037,nssv704809,nssv682438,nssv672470,nssv669775,nssv662345,nssv663424,nssv682024,nssv664807 M 2026 0 17 "" nsv437186 20 51742861 51748718 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467067 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA10859 nsv3418 20 51748569 51773832 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1610 S 9 1 0 "" NA19240 dgv66n68 20 51802067 52024202 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH nsv834008,nsv834009 M 95 0 3 "" nsv179471 20 51870895 51871535 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198049 M 24 "" nsv3419 20 52070988 52105522 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4543 S 9 0 1 "" NA12878 nsv437187 20 52077921 52093527 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467068 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA06991 nsv527711 20 52078573 52078948 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704191 S 2026 0 1 "" nsv517164 20 52080333 52094148 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv673654,nssv689800,nssv682038,nssv654730,nssv670887,nssv687006,nssv683470,nssv662512,nssv676611,nssv705704,nssv659595,nssv669015,nssv655474,nssv658286,nssv669478,nssv666322,nssv658559,nssv661173,nssv654541,nssv684335,nssv658740,nssv687775,nssv676910,nssv684887,nssv678867,nssv671549,nssv653284,nssv655885,nssv690645,nssv688243,nssv678324,nssv664528,nssv667624,nssv664901,nssv691355,nssv680191,nssv679523,nssv662230,nssv676661,nssv667052,nssv654243,nssv678223,nssv654405,nssv670318,nssv687380,nssv690681,nssv670393,nssv685143,nssv663967,nssv691228,nssv669096,nssv688841,nssv689810,nssv693748,nssv686399,nssv681896,nssv654378,nssv674952,nssv662254,nssv689146,nssv698904,nssv670365,nssv674660,nssv678029,nssv680453,nssv679361,nssv682201,nssv651969,nssv693468,nssv671323,nssv663288,nssv664656,nssv688298,nssv658800,nssv652692,nssv686224,nssv657188,nssv690818,nssv660753,nssv676590,nssv688789,nssv692611,nssv681044,nssv671417,nssv663624,nssv689733,nssv680821,nssv673620,nssv663603,nssv660961,nssv685517,nssv681803,nssv666299,nssv657846,nssv657559,nssv665709,nssv663322,nssv654672,nssv667858,nssv683674,nssv664355,nssv655653,nssv673511,nssv683107,nssv675833,nssv681719,nssv675312,nssv681485,nssv655427,nssv677406,nssv687697,nssv675847,nssv657112,nssv665016,nssv684735,nssv691655,nssv652401,nssv683541,nssv692152,nssv660613,nssv667503,nssv684132,nssv680556,nssv653903,nssv662734,nssv686451,nssv689243,nssv671610,nssv666019,nssv691540,nssv660411,nssv688971,nssv664632,nssv689896,nssv683322,nssv662381,nssv654183,nssv688425,nssv693515 M 2026 4 135 "" nsv442485 20 52081215 52092058 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv513n27 20 52081230 52088118 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv459010,nsv459014,nsv459013,nsv459011,nsv459018,nsv459009,nsv459017,nsv459012,nsv459016,nsv459015 M 1557 0 10 "" 1780854464_A,1780854486_A,1782681216_A,1782681263_A,HGDP00671,HGDP00699,HGDP00730,HGDP00741,NINDS_118,NINDS_220 nsv817899 20 52081230 52088118 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415712,nssv1418259,nssv1416209,nssv1416284,nssv1416210,nssv1418248 M 112 0 6 "" NA06991,NA06993,NA12057,NA12248,NA12878,NA12891 nsv433324 20 52081230 52097190 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463205 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA12878 nsv179659 20 52085353 52094783 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198237 M 24 "" dgv1335e1 20 52112544 52118615 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv22269,esv1023 M 271 0 0 "" NA12762 nsv834010 20 52193231 52366346 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455142 S 95 0 1 "" dgv67n68 20 52291748 52530584 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH nsv834012,nsv834011 M 95 4 0 "" nsv178887 20 52318820 52328243 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197465 M 24 "" nsv527610 20 52413506 52417838 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704074 S 2026 0 1 "" nsv180171 20 52726059 52726372 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198749 M 24 "" nsv507909 20 52766306 52772306 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617948 S 4 1 0 "" CHM nsv517820 20 52854970 52858624 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695224 S 2026 0 1 "" nsv437840 20 52922049 52927629 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467721 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19194 dgv248n21 20 52930546 52997244 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv524442,nsv521883 M 2026 0 2 "" nsv459023 20 53140029 53212566 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535865 S 1557 0 1 "" 1780862373_A nsv515971 20 53208764 53212566 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv680515,nssv663483,nssv665536,nssv666478,nssv680045 M 2026 0 5 "" nsv509777 20 53537994 53561604 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619847 S 4 1 0 "" NA10860 nsv511066 20 53537994 53570380 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624368,nssv621658,nssv618681 M 4 0 0 "" CHM,NA15510,NA18994 nsv179138 20 53573164 53573164 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197716 M 24 "" nsv179103 20 53636476 53636581 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197681 M 24 "" nsv179993 20 53647362 53647494 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198571 M 24 "" nsv180631 20 53707139 53711211 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv199209 M 24 "" nsv518340 20 53730853 53844342 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695769 S 2026 1 0 "" nsv3420 20 53829990 53877418 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5886,nssv10303,nssv4544 M 9 0 3 "" NA12878,NA18956,NA19129 nsv179549 20 53868018 53874023 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198127 M 24 "" nsv178765 20 53896628 53896944 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197343 M 24 "" nsv178675 20 53924517 53924517 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197253 M 24 "" nsv528431 20 54257212 54272669 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705024 S 2026 0 1 "" nsv834013 20 54315742 54484589 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455147 S 95 1 0 "" nsv522197 20 54357169 54370950 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694970 S 2026 0 1 "" nsv526373 20 54371614 54371871 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702669 S 2026 0 1 "" nsv179276 20 54396557 54396557 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197854 M 24 "" nsv179472 20 54396618 54396618 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198050 M 24 "" nsv525425 20 54412442 54905757 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701549 S 2026 1 0 "" nsv527880 20 54418175 54419681 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704382 S 2026 0 1 "" nsv518442 20 54422733 54438409 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694237 S 2026 1 0 "" dgv249n21 20 54448573 54454096 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv524572,nsv519169 M 2026 0 2 "" nsv525175 20 54448573 54459169 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701251 S 2026 0 1 "" nsv834015 20 54527175 54664965 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455148 S 95 0 1 "" nsv459024 20 54702731 54778461 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535866 S 1557 1 0 "" 1780862484_A nsv180168 20 54790490 54790585 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198746 M 24 "" nsv459025 20 54842260 54859768 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535867 S 1557 0 1 "" 1780862345_A nsv528099 20 54842260 54859768 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704639 S 2026 0 1 "" nsv817900 20 54842260 54859768 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415876 S 112 0 1 "" NA11992 nsv459026 20 54842260 54872193 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535868 S 1557 0 1 "" NINDS_156 nsv519646 20 54844347 54844478 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696971 S 2026 1 0 "" nsv834016 20 54873605 55093917 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455149 S 95 0 1 "" nsv3422 20 54979693 55024761 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7692 S 9 0 1 "" NA12156 nsv834017 20 54989120 55125001 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455150 S 95 0 1 "" nsv519781 20 54989563 54996599 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697048 S 2026 0 1 "" dgv103n6 20 55040359 55040498 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv180378,nsv179326 M 24 "" nsv3423 20 55042669 55087417 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7693 S 9 0 1 "" NA12156 nsv523091 20 55177906 55224755 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698783 S 2026 0 1 "" nsv459027 20 55306931 55374328 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535869 S 1557 0 1 "" 1780862408_A nsv3424 20 55385686 55417006 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv11040 S 9 1 0 "" NA15510 nsv516617 20 55386960 55430141 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv669600,nssv676692 M 2026 0 2 "" esv33591 20 55399411 55400534 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101025 S 51 0 1 "" 21693 esv33697 20 55403115 55403948 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93572,essv93341,essv94869,essv100286 M 51 4 0 "" 22128,22170,22231,22286 nsv517912 20 55403739 55459234 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695322 S 2026 0 1 "" nsv180193 20 55425941 55425941 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198771 M 24 "" nsv3425 20 55528395 55563428 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4545 S 9 1 0 "" NA12878 dgv1336e1 20 55604184 55815784 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv685,essv1835,essv6350,essv7085,essv15646,essv12555,essv5304,essv13525,essv4369,essv16219,essv7589,essv4946,essv20401,essv14056,essv8333,essv15299,essv18147,essv9831,essv10882,essv18663,essv3414,essv24122,essv10420,essv16083,essv17612,essv4009,essv7361 M 271 0 0 "" NA10830,NA10847,NA11993,NA12234,NA12753,NA18501,NA18537,NA18545,NA18563,NA18570,NA18573,NA18609,NA18637,NA18858,NA18861,NA18862,NA18863,NA18871,NA18912,NA18945,NA18970,NA18975,NA18976,NA19098,NA19160,NA19161,NA19222 dgv1337e1 20 55604184 55914083 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv4133,essv7842,essv19602,essv6273,essv15567,essv7695,essv21690 M 271 0 0 "" NA12155,NA12248,NA18555,NA18558,NA18633,NA18636,NA19137 dgv1338e1 20 55604184 56121677 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv381,essv12685,essv23576 M 271 0 0 "" NA12006,NA18500 nsv9817 20 55664589 55674624 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25623 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18980 nsv9818 20 55717058 55719627 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25976,nssv24355 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA12740 nsv459028 20 55727719 55740952 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535870 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00998 nsv834018 20 55751745 55888119 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455151 S 95 1 0 "" nsv3426 20 55835107 55869124 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1612 S 9 1 0 "" NA19240 nsv180121 20 55842260 55842810 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198699 M 24 "" nsv178879 20 55894806 55894806 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197457 M 24 "" nsv526863 20 55911421 55912403 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703221 S 2026 0 1 "" nsv3427 20 55972678 56006356 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7694 S 9 1 0 "" NA12156 nsv179990 20 55988109 55988200 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198568 M 24 "" nsv180620 20 56105484 56105484 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv199198 M 24 "" nsv180048 20 56133153 56136114 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198626 M 24 "" esv33505 20 56221514 56221744 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv94256 S 51 1 0 "" 22394 nsv527689 20 56394865 56396117 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704165 S 2026 0 1 "" nsv834019 20 56406060 56615549 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455152 S 95 0 1 "" nsv3428 20 56459513 56504587 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7696 S 9 0 1 "" NA12156 nsv525781 20 56488558 56488663 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701956 S 2026 0 1 "" nsv179317 20 56550658 56550729 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197895 M 24 "" nsv3429 20 56622489 56639215 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5887 S 9 1 0 "" NA19129 nsv180089 20 56624407 56624407 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198667 M 24 "" nsv526233 20 56631344 56637454 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702500 S 2026 0 1 "" nsv523512 20 56631344 56645554 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699284 S 2026 0 1 "" nsv521973 20 56737668 56746887 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694053 S 2026 0 1 "" nsv459031 20 56855022 56912528 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535872 S 1557 0 1 "" 1780862101_A nsv459032 20 56877226 56923643 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535873 S 1557 0 1 "" 1780862414_A nsv525118 20 56981340 57005158 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701183 S 2026 0 1 "" nsv3430 20 57054210 57088313 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4546 S 9 1 0 "" NA12878 nsv517931 20 57061634 57094259 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695343 S 2026 1 0 "" nsv834020 20 57063146 57238574 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455153 S 95 0 1 "" nsv834021 20 57140403 57304375 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455154 S 95 1 0 "" nsv178666 20 57156840 57157173 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197244 M 24 "" nsv523738 20 57194903 57203357 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699554 S 2026 0 1 "" nsv178602 20 57219300 57219515 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197180 M 24 "" nsv3431 20 57251288 57258489 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7697 S 9 1 0 "" NA12156 nsv3433 20 57276308 57310515 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3066 S 9 1 0 "" NA18555 nsv525595 20 57506041 57509852 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701737 S 2026 0 1 "" nsv178747 20 57573092 57573092 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197325 M 24 "" nsv3434 20 57609887 57643010 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7698 S 9 1 0 "" NA12156 nsv3435 20 57671856 57705787 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7699 S 9 1 0 "" NA12156 nsv459033 20 57735790 57741780 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535874 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00356 nsv520022 20 57735790 57741780 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701448,nssv660128,nssv676385 M 2026 0 3 "" nsv817901 20 57998636 58005901 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416988 S 112 0 1 "" NA19137 nsv519134 20 58051646 58053755 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694309 S 2026 0 1 "" nsv179826 20 58095891 58096031 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198404 M 24 "" nsv522132 20 58341066 58342744 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694906 S 2026 0 1 "" dgv250n21 20 58388925 58391054 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv517887,nsv521238 M 2026 0 2 "" nsv179359 20 58465139 58465289 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197937 M 24 "" nsv834022 20 58476906 58678743 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455155 S 95 1 0 "" nsv520363 20 58495497 58495708 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697373 S 2026 0 1 "" dgv514n27 20 58546996 58554851 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv459035,nsv459034 M 1557 0 2 "" 1780862015_A,1780862551_A nsv517193 20 58546996 58554851 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv685877,nssv693833,nssv666461,nssv684972,nssv683263,nssv672228,nssv671873,nssv660160,nssv656842,nssv678883,nssv667859,nssv690157,nssv670048,nssv692784,nssv677492,nssv659665,nssv693469,nssv657592,nssv676662,nssv680557,nssv681911,nssv658151,nssv653981,nssv663376,nssv664256,nssv678396,nssv691143,nssv681220 M 2026 0 28 "" nsv817902 20 58546996 58554851 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416114,nssv1416113,nssv1417083 M 112 0 3 "" NA12043,NA12801,NA12813 nsv442486 20 58547104 58556092 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv510492 20 58785703 58791703 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624248,nssv621502,nssv622318,nssv618458 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv527839 20 58792537 58797358 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704337 S 2026 0 1 "" nsv442487 20 58831790 58841969 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv520295 20 58836797 58840032 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv675025,nssv662470,nssv671550,nssv691913 M 2026 0 4 "" nsv817903 20 58836797 58840032 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418334,nssv1418333,nssv1416415 M 112 0 3 "" NA18856,NA19093,NA19094 nsv510493 20 58930513 58936513 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624249 S 4 0 1 "" NA18994 nsv834023 20 58951342 59171255 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455156 S 95 0 1 "" nsv9819 20 58992103 58997493 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27128 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19240 dgv1339e1 20 58995933 59023990 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv20484,esv1125,essv20544 M 271 0 0 "" NA11995,NA12249 nsv516169 20 58997486 59025355 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv666593,nssv672139,nssv668275,nssv689423,nssv673165,nssv681101,nssv688190,nssv657921,nssv692581,nssv690780,nssv675126 M 2026 11 0 "" nsv459036 20 58998640 59014432 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535877 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00130 dgv515n27 20 58998640 59022667 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv459042,nsv459045,nsv459038,nsv459040,nsv459043,nsv459037,nsv459047,nsv459048,nsv459044,nsv459046,nsv459039 M 1557 11 0 "" HGDP00066,HGDP00082,HGDP00109,HGDP00120,HGDP00146,HGDP00591,HGDP00766,HGDP01214,HGDP01228,HGDP01306,NINDS_216 dgv170e55 20 59002900 59025400 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv2751918,esv2751919 M 771 2 0 "" BEC_448,BEC_466 nsv817904 20 59002911 59022667 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415925,nssv1415926 M 112 2 0 "" NA10861,NA11995 nsv442488 20 59003765 59023478 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv817905 20 59010964 59022667 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415713 S 112 1 0 "" NA12249 nsv509778 20 59022859 59022859 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618137 S 4 1 0 "" CHM nsv180476 20 59054409 59054483 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv199054 M 24 "" nsv516058 20 59068892 59072251 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv665930,nssv659381 M 2026 0 2 "" nsv520886 20 59077126 59077180 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv676991,nssv686107 M 2026 0 2 "" nsv524672 20 59108657 59111493 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700643 S 2026 0 1 "" nsv3436 20 59126688 59136047 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7700 S 9 1 0 "" NA12156 nsv459049 20 59132494 59140659 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535890 S 1557 0 1 "" NINDS_23 nsv522925 20 59187980 59193184 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698587 S 2026 0 1 "" nsv525918 20 59237027 59241454 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702122 S 2026 0 1 "" nsv178943 20 59238069 59238118 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197521 M 24 "" nsv179121 20 59291397 59291473 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197699 M 24 "" nsv509780 20 59309848 59347152 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619848 S 4 1 0 "" NA10860 nsv3437 20 59315183 59348837 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7701 S 9 1 0 "" NA12156 nsv179441 20 59317772 59317822 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198019 M 24 "" nsv179535 20 59398890 59398942 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198113 M 24 "" nsv459050 20 59406283 59425244 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535891 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00251 nsv179380 20 59558601 59558667 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197958 M 24 "" nsv180324 20 59594315 59594315 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198902 M 24 "" nsv459051 20 59647962 59722273 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535892 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00388 nsv180477 20 59697617 59697796 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv199055 M 24 "" dgv516n27 20 59701464 59738235 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv459055,nsv459054,nsv459053 M 1557 3 0 "" HGDP00033,HGDP00161,HGDP00208 dgv517n27 20 59723887 59750613 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv459056,nsv459058,nsv459057 M 1557 0 3 "" HGDP00017,HGDP00230,HGDP00341 nsv179193 20 59752804 59752879 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197771 M 24 "" nsv179156 20 59752964 59753040 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197734 M 24 "" nsv178622 20 59757380 59757380 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197200 M 24 "" nsv3438 20 59765985 59800675 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1613 S 9 1 0 "" NA19240 nsv178561 20 59792752 59792814 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197139 M 24 "" nsv179872 20 59792752 59792939 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198450 M 24 "" nsv178924 20 59863182 59863364 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197502 M 24 "" nsv179279 20 59864819 59864917 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197857 M 24 "" dgv1340e1 20 59894657 60016638 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1845,essv6191,essv7377,essv4366,essv4796,essv6999,essv16945,esv146,essv20204,essv5396,essv3974 M 271 0 0 "" NA11832,NA18532,NA18563,NA18573,NA18612,NA18620,NA18623,NA18970,NA18976,NA19144 nsv509781 20 59920374 60059022 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623831 S 4 1 0 "" NA18994 nsv520753 20 59925890 59936745 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697591 S 2026 0 1 "" nsv3439 20 59936789 59981429 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2342,nssv4547 M 9 0 2 "" NA12878,NA18555 nsv9820 20 59950066 59957562 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27569,nssv22361,nssv22540,nssv24950,nssv25147,nssv25400,nssv25527,nssv25996,nssv24854,nssv27191,nssv24159,nssv25494,nssv26938,nssv26136,nssv24381,nssv25646,nssv28648,nssv27947,nssv21995,nssv27692,nssv25669 M 31 21 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10847,NA12155,NA12740,NA12802,NA12872,NA18504,NA18517,NA18537,NA18563,NA18564,NA18853,NA18860,NA18942,NA18975,NA18980,NA19007,NA19132,NA19221 nsv179836 20 59953184 59953633 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198414 M 24 "" nsv179262 20 59956025 59956270 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197840 M 24 "" nsv179825 20 59959684 59959988 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198403 M 24 "" nsv179722 20 59977187 59977274 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198300 M 24 "" nsv9821 20 59979109 59980654 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27700,nssv25144,nssv27716,nssv25425 M 31 4 0 Samples from several populations that are part of the HapMap project. "" NA18517,NA18552,NA18563,NA18972 nsv179612 20 60004020 60004338 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198190 M 24 "" nsv509782 20 60134087 60188779 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619849 S 4 1 0 "" NA10860 nsv3440 20 60146156 60177923 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6947 S 9 1 0 "" NA12156 nsv518296 20 60211696 60423470 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695727 S 2026 0 1 "" nsv520792 20 60214968 60220455 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv675470,nssv693290 M 2026 0 2 "" esv2422398 20 60216284 60775837 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161340 S 181 1 0 "" ND01424 nsv834024 20 60268365 60463973 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455157 S 95 1 0 "" nsv3441 20 60306354 60328510 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5888 S 9 1 0 "" NA19129 nsv817907 20 60320976 60329092 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417143 S 112 0 1 "" NA18542 nsv817908 20 60320976 60390312 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417543,nssv1417955 M 112 0 2 "" NA18853,NA18971 nsv520024 20 60320976 60437537 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv673448,nssv688686,nssv662749,nssv688745,nssv705135,nssv700060,nssv660129,nssv687089 M 2026 0 8 "" nsv459059 20 60323959 60386791 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535900 S 1557 0 1 "" NINDS_119 dgv518n27 20 60323959 60421405 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv459060,nsv459062,nsv459061 M 1557 0 3 "" HGDP00433,HGDP00491,HGDP01351 nsv459065 20 60340841 60913992 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535905 S 1557 1 0 "" NINDS_83 nsv179849 20 60350299 60352225 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198427 M 24 "" nsv180561 20 60381879 60382018 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv199139 M 24 "" nsv459067 20 60396019 60423470 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535906 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00655 nsv459068 20 60452619 60584935 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535907 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01181 nsv437188 20 60457457 60465103 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467069 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA07029 dgv1341e1 20 60464834 60524832 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv8384,essv1842,essv4153,essv17629,essv21688,essv20369,essv6219,essv24528,essv9351,essv14128,essv7103,essv22177,essv3401,essv1999,essv662,essv2691 M 271 0 0 "" NA10830,NA10857,NA12248,NA12753,NA12802,NA18537,NA18555,NA18636,NA18853,NA18858,NA18861,NA18945,NA18949,NA18967,NA18975,NA18976 essv22589 20 60464834 60583327 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA07348 dgv1342e1 20 60464834 60897084 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv7792,essv4746,essv9059,essv15289,essv7307,essv5817,esv166,essv15661,essv7541,essv136,essv3978 M 271 0 0 "" NA18545,NA18558,NA18566,NA18570,NA18620,NA18912,NA18968,NA18970,NA19094,NA19132 dgv1343e1 20 60733815 60897084 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv7020,essv6148,essv8131,essv4079,essv10415 M 271 0 0 "" NA18532,NA18612,NA18635,NA19206,NA19222 nsv834026 20 60738088 60897084 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455158,nssv1455164,nssv1455162,nssv1455163,nssv1455161,nssv1455160,nssv1455159 M 95 0 7 "" nsv9822 20 60773792 60776229 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26528 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19144 nsv3442 20 60784567 60816744 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3067,nssv6948 M 9 2 0 "" NA12156,NA18555 nsv834027 20 60809452 60976711 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455165,nssv1455166 M 95 0 2 "" nsv521375 20 60836902 60844639 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697985 S 2026 0 1 "" nsv515840 20 60839917 60844639 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv668049,nssv664986,nssv680630,nssv689762,nssv679592 M 2026 0 5 "" nsv9823 20 60842942 60845446 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27577,nssv24185 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18942,NA19132 nsv516618 20 60853112 60877521 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv669601,nssv686741 M 2026 0 2 "" nsv9825 20 60877267 61703127 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27791,nssv28649 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA18502,NA19221 esv32958 20 60991659 61035065 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv94135 S 51 0 1 "" 21802 nsv459069 20 61031598 61069919 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535908 S 1557 1 0 "" 1782681096_A nsv179331 20 61055926 61055978 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197909 M 24 "" nsv459070 20 61056151 61069919 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535909 S 1557 0 1 "" 1780862021_A nsv834028 20 61079458 61234048 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455178,nssv1455174,nssv1455182,nssv1455177,nssv1455175,nssv1455176,nssv1455192,nssv1455191,nssv1455179,nssv1455181,nssv1455180,nssv1455193,nssv1455184,nssv1455173,nssv1455189,nssv1455183,nssv1455190,nssv1455194,nssv1455185,nssv1455172,nssv1455167,nssv1455188,nssv1455169,nssv1455171,nssv1455168,nssv1455186,nssv1455187,nssv1455170 M 95 0 28 "" nsv179763 20 61088216 61088372 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198341 M 24 "" nsv523875 20 61112293 61153201 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699717 S 2026 1 0 "" nsv527759 20 61114775 61121787 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704246 S 2026 0 1 "" nsv509783 20 61155892 61201975 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619850 S 4 1 0 "" NA10860 dgv68n68 20 61178258 61326392 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH nsv834029,nsv834030 M 95 0 31 "" nsv179242 20 61181353 61189084 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197820 M 24 "" nsv180474 20 61192017 61192115 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv199052 M 24 "" nsv179318 20 61195144 61196041 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197896 M 24 "" esv32949 20 61195187 61195962 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97364 S 51 0 1 "" 21879 nsv3444 20 61197718 61205825 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5889 S 9 1 0 "" NA19129 nsv518687 20 61209560 61224493 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694066 S 2026 0 1 "" nsv834031 20 61234049 61347722 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455230,nssv1455242,nssv1455250,nssv1455241,nssv1455285,nssv1455256,nssv1455282,nssv1455284,nssv1455283,nssv1455232,nssv1455245,nssv1455239,nssv1455290,nssv1455240,nssv1455278,nssv1455276,nssv1455243,nssv1455244,nssv1455280,nssv1455279,nssv1455248,nssv1455238,nssv1455246,nssv1455281,nssv1455251,nssv1455286,nssv1455255,nssv1455289,nssv1455229,nssv1455231,nssv1455287,nssv1455288,nssv1455252,nssv1455228,nssv1455254,nssv1455253,nssv1455291,nssv1455259,nssv1455277,nssv1455264,nssv1455257,nssv1455237,nssv1455227,nssv1455295,nssv1455275,nssv1455258,nssv1455260,nssv1455263,nssv1455262,nssv1455261,nssv1455268,nssv1455236,nssv1455249,nssv1455294,nssv1455274,nssv1455267,nssv1455266,nssv1455265,nssv1455273,nssv1455271,nssv1455235,nssv1455270,nssv1455293,nssv1455269,nssv1455233,nssv1455247,nssv1455234,nssv1455292,nssv1455226,nssv1455272 M 95 0 70 "" nsv3445 20 61255441 61276259 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4548,nssv3068,nssv1614 M 9 3 0 "" NA12878,NA18555,NA19240 dgv519n27 20 61256104 61350614 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv459071,nsv459072 M 1557 0 2 "" 1780854231_A,HGDP01079 nsv527884 20 61310030 61323074 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704386 S 2026 0 1 "" nsv834032 20 61315794 61409958 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455308,nssv1455297,nssv1455298,nssv1455301,nssv1455307,nssv1455299,nssv1455300,nssv1455302,nssv1455303,nssv1455305,nssv1455314,nssv1455313,nssv1455309,nssv1455304,nssv1455312,nssv1455310,nssv1455311,nssv1455322,nssv1455316,nssv1455296,nssv1455315,nssv1455318,nssv1455317,nssv1455321,nssv1455320,nssv1455319,nssv1455323,nssv1455306,nssv1455324,nssv1455327,nssv1455328,nssv1455325,nssv1455326 M 95 0 33 "" dgv520n27 20 61319068 61366365 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv459075,nsv459073 M 1557 0 2 "" 1780862585_A,HGDP00892 nsv517648 20 61323074 61349395 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv652665,nssv656492,nssv656262,nssv698957,nssv679127 M 2026 0 5 "" nsv518905 20 61323074 61366354 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696363 S 2026 0 1 "" nsv525279 20 61323074 61425120 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701382 S 2026 0 1 "" nsv180553 20 61323428 61323553 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv199131 M 24 "" nsv3446 20 61339561 61384312 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7702 S 9 0 1 "" NA12156 nsv522880 20 61340910 61366354 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698536 S 2026 0 1 "" esv32831 20 61354259 61358066 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101497,essv94820,essv101358,essv97347,essv93550,essv93315,essv100441,essv96357 M 51 0 8 "" 21603,21791,21805,21879,22128,22170,22300,22371 nsv178954 20 61437029 61437029 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197532 M 24 "" nsv179358 20 61437624 61437680 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197936 M 24 "" nsv179313 20 61437660 61437716 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197891 M 24 "" nsv180574 20 61452933 61452933 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv199152 M 24 "" nsv180222 20 61494420 61494483 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198800 M 24 "" nsv179606 20 61494580 61494580 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198184 M 24 "" nsv179604 20 61503745 61503803 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198182 M 24 "" nsv834033 20 61523233 61656784 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455333,nssv1455332,nssv1455331,nssv1455334,nssv1455336,nssv1455335,nssv1455337,nssv1455339,nssv1455338,nssv1455330,nssv1455329 M 95 11 0 "" nsv178974 20 61533699 61533752 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197552 M 24 "" nsv3447 20 61535478 61576411 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3069,nssv5890 M 9 2 0 "" NA18555,NA19129 nsv834034 20 61564622 61727698 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455344,nssv1455350,nssv1455349,nssv1455348,nssv1455352,nssv1455351,nssv1455345,nssv1455346,nssv1455343,nssv1455347,nssv1455340,nssv1455342,nssv1455341 M 95 0 13 "" dgv1344e1 20 61572793 61846811 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv14854,esv314 M 271 0 0 "" NA18522 nsv3448 20 61590410 61622436 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10304 S 9 1 0 "" NA18956 dgv521n27 20 61624230 61668792 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv459080,nsv459079 M 1557 0 2 "" HGDP00696,NINDS_49 nsv521734 20 61624230 61668792 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694497 S 2026 0 1 "" dgv522n27 20 61624230 61692836 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv459083,nsv459081 M 1557 0 2 "" HGDP00899,NINDS_60 dgv35n64 20 61642713 61683372 CNV Loss Wang_et_al_2007 17921354 SNP_array nsv817910,nsv817909 M 112 0 3 "" NA12750,NA18608,NA19003 nsv517702 20 61642713 61683372 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv690997,nssv662149,nssv674935,nssv683287,nssv677152,nssv689511,nssv661470,nssv679024,nssv684028,nssv671230,nssv667468,nssv674687,nssv668209,nssv669156,nssv673999,nssv656461,nssv652901,nssv659166,nssv655307,nssv671375,nssv683345,nssv680089,nssv692973,nssv681599,nssv674168,nssv689400,nssv670009,nssv657050,nssv659432,nssv679472,nssv690914,nssv673310,nssv658211,nssv669602,nssv693500,nssv661844,nssv656214,nssv660130,nssv670615,nssv676895 M 2026 0 40 "" nsv180256 20 61648495 61648495 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198834 M 24 "" nsv179406 20 61668477 61668477 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197984 M 24 "" nsv179511 20 61681782 61682120 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198089 M 24 "" dgv1345e1 20 61685172 61846811 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv17592,essv21146,essv21837,essv22629,essv1888,essv16983,essv12534,essv1533,essv19624,essv3029,essv24290,essv1794,essv10775,essv24679,essv22079,essv22569,essv10908,essv20389,essv5536,essv22111,essv14607,essv23673,essv4768,essv6042,essv5792,essv14561,essv7076,essv21246,essv23215,essv13162,essv22944,essv8321,essv17880,essv20286,essv10362,essv17822,essv9194,essv4364,essv7825,essv22923,essv18399,essv11212,essv12688,essv18612,essv8913,essv18227,essv11676,essv19684,essv16107,essv4300,essv16692,essv15209,essv14315,essv9876,essv19401,essv13483,essv23348,essv13068,essv9325,essv13884,essv15486,essv23969,essv10658,essv17336,essv24572,essv6356,essv12967,essv21681,essv23941,essv19793,essv14069,essv24966,essv21405,essv9804,essv24841,essv20339,essv24431,essv17710,essv15695,essv9709,essv21511,essv17113,essv12739,essv21222,essv18252,essv22392,essv1438,essv3394,essv14764,essv19190,essv24156,essv20613,essv16003,essv16267,essv12228,essv14460,essv17631,essv22768,essv23583,essv10080,essv23419,essv1105,essv17260,essv16905,essv20179,essv15109,essv2238,essv13624,essv11763,essv20121,essv22214,essv13781,essv18082,essv4017,essv9633 M 271 0 0 "" NA07000,NA07019,NA07056,NA07345,NA07348,NA07357,NA10830,NA10831,NA10835,NA10839,NA10846,NA10847,NA10854,NA10855,NA10856,NA10857,NA10863,NA11829,NA11830,NA11832,NA11839,NA11840,NA11992,NA12003,NA12006,NA12044,NA12057,NA12144,NA12145,NA12154,NA12155,NA12156,NA12234,NA12236,NA12248,NA12249,NA12264,NA12707,NA12716,NA12740,NA12750,NA12752,NA12753,NA12760,NA12762,NA12814,NA12815,NA12865,NA12872,NA12873,NA12875,NA18500,NA18501,NA18503,NA18504,NA18505,NA18523,NA18529,NA18537,NA18558,NA18566,NA18571,NA18573,NA18603,NA18609,NA18620,NA18852,NA18853,NA18854,NA18855,NA18856,NA18859,NA18861,NA18863,NA18912,NA18913,NA18914,NA18944,NA18945,NA18964,NA18966,NA18970,NA18976,NA18980,NA18981,NA18997,NA19093,NA19094,NA19098,NA19099,NA19100,NA19101,NA19102,NA19103,NA19127,NA19128,NA19129,NA19141,NA19142,NA19144,NA19145,NA19153,NA19154,NA19159,NA19161,NA19171,NA19192,NA19194,NA19200,NA19201,NA19202,NA19204,NA19205,NA19209,NA19222 nsv9826 20 61707836 61713099 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25199,nssv25202,nssv26542,nssv26164,nssv22025,nssv26016,nssv25656,nssv24678,nssv27201,nssv25517,nssv26949,nssv27585,nssv27707 M 31 1 12 Samples from several populations that are part of the HapMap project. "" NA10839,NA10847,NA10863,NA11830,NA12155,NA12740,NA18504,NA18517,NA18552,NA18853,NA19132,NA19144,NA19173 nsv179147 20 61710693 61710932 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197725 M 24 "" nsv9827 20 61750638 61755589 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25227,nssv27211,nssv26586,nssv22391 M 31 0 4 Samples from several populations that are part of the HapMap project. "" NA12872,NA18504,NA18853,NA19144 nsv9828 20 61770072 61775563 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26600,nssv25550,nssv24407,nssv22698 M 31 3 1 Samples from several populations that are part of the HapMap project. "" NA07029,NA18564,NA18572,NA19144 nsv189 20 61777021 61798147 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv189 S 1 1 0 "" NA15510 nsv3449 20 61777021 61798419 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10305,nssv6949,nssv4549,nssv2343,nssv5891,nssv11041 M 9 6 0 "" NA12156,NA12878,NA15510,NA18555,NA18956,NA19129 nsv179257 20 61778405 61786774 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197835 M 24 "" dgv523n27 20 61840441 61891456 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv459086,nsv459084 M 1557 0 2 "" HGDP00655,NINDS_119 nsv459087 20 61861458 61891456 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535921 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01338 nsv179829 20 61872799 61872875 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198407 M 24 "" nsv180391 20 61872876 61872876 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198969 M 24 "" nsv179256 20 61895462 61895462 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197834 M 24 "" nsv180339 20 61909890 61909890 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198917 M 24 "" nsv509784 20 61926179 62085122 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619851 S 4 1 0 "" NA10860 nsv469773 20 61947225 62141109 CNV Gain Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649794 M 265 3 0 Samples from several populations that are part of the HapMap project. "" nsv180638 20 61949099 61949099 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv199216 M 24 "" nsv179985 20 61951726 61951776 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198563 M 24 "" nsv9829 20 62020358 62022263 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25573 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18564 nsv9830 20 62063139 62083713 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22451,nssv22727,nssv27953,nssv25668,nssv27753,nssv24211,nssv26213,nssv25540,nssv24909,nssv25224,nssv28650,nssv24433,nssv25691,nssv26155,nssv25596,nssv27798,nssv25252,nssv27138,nssv26959,nssv25480,nssv24704,nssv24975,nssv27593,nssv25678,nssv27221,nssv22570 M 31 26 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10863,NA11830,NA12155,NA12802,NA12872,NA18502,NA18504,NA18537,NA18552,NA18563,NA18564,NA18572,NA18853,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19173,NA19221,NA19240 nsv509785 20 62100900 62239173 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619852 S 4 1 0 "" NA10860 dgv1346e1 20 62108666 62284575 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv8191,essv15034,essv1785,essv17506,essv19242,essv10840,essv16084 M 271 0 0 "" NA10838,NA12762,NA18501,NA18871,NA18997,NA19116,NA19129 dgv1347e1 20 62108666 62435964 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv3166,essv20032,esv14,essv10540,essv17907,essv16303 M 271 0 0 "" NA07048,NA12003,NA19012,NA19161,NA19240 nsv9831 20 62113491 62121840 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27714,nssv25730,nssv27959,nssv26232,nssv26613,nssv28681,nssv27178,nssv25690,nssv22786,nssv24459 M 31 2 8 Samples from several populations that are part of the HapMap project. "" NA07029,NA11830,NA18517,NA18572,NA18860,NA18980,NA19144,NA19173,NA19221,NA19240 nsv179409 20 62180079 62180079 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197987 M 24 "" nsv180275 20 62206455 62206552 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198853 M 24 "" nsv179347 20 62224977 62225253 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197925 M 24 "" nsv3450 20 62226203 62260177 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7703 S 9 1 0 "" NA12156 nsv9832 20 62232847 62236693 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27751,nssv27231,nssv26969,nssv25277,nssv22600,nssv27188,nssv25742,nssv26036,nssv25503,nssv27965,nssv22055,nssv25752,nssv24485 M 31 11 2 Samples from several populations that are part of the HapMap project. "" NA07029,NA10847,NA11830,NA12155,NA12740,NA12802,NA18504,NA18517,NA18563,NA18853,NA18860,NA18980,NA19240 nsv179970 20 62234272 62235717 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198548 M 24 "" dgv105n6 20 62236815 62237078 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv178701,nsv180699 M 24 "" nsv524962 20 62243081 62349775 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700983 S 2026 0 1 "" nsv9833 20 62274903 62278821 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24934,nssv27971,nssv25563 M 31 3 0 Samples from several populations that are part of the HapMap project. "" NA07048,NA10839,NA18860 nsv179382 20 62275475 62275530 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197960 M 24 "" nsv527137 20 62306964 62316975 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703524 S 2026 0 1 "" nsv179519 20 62337583 62337966 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv198097 M 24 "" nsv9834 20 62370954 62374135 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27805,nssv28682,nssv26979 M 31 3 0 Samples from several populations that are part of the HapMap project. "" NA12155,NA18502,NA19221 nsv178855 20 62379536 62379600 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv197433 M 24 "" nsv9836 20 62406526 62435964 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24511,nssv27758,nssv24730,nssv25774 M 31 0 4 Samples from several populations that are part of the HapMap project. "" NA07029,NA10863,NA11830,NA18517 nsv834035 21 9721646 9791026 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455362,nssv1455355,nssv1455375,nssv1455354,nssv1455370,nssv1455359,nssv1455356,nssv1455353,nssv1455358,nssv1455364,nssv1455357,nssv1455361,nssv1455360,nssv1455363,nssv1455374,nssv1455366,nssv1455373,nssv1455381,nssv1455368,nssv1455371,nssv1455372,nssv1455369,nssv1455379,nssv1455385,nssv1455378,nssv1455380,nssv1455384,nssv1455382,nssv1455383,nssv1455367,nssv1455386,nssv1455376,nssv1455365,nssv1455377 M 95 1 33 "" nsv834037 21 9749033 9791026 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455389,nssv1455388,nssv1455387,nssv1455390,nssv1455391,nssv1455394,nssv1455393,nssv1455392,nssv1455396,nssv1455395 M 95 0 10 "" nsv442783 21 9758742 9965425 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv69n68 21 9769016 9961611 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH nsv834038,nsv834039 M 95 0 46 "" nsv9837 21 9873683 10009657 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27812,nssv25526,nssv28683,nssv26626 M 31 2 2 Samples from several populations that are part of the HapMap project. "" NA18502,NA18563,NA19144,NA19221 esv32564 21 9886917 10198154 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98690,essv98662,essv101039,essv95094,essv98165,essv101357,essv97950,essv99077,essv93241,essv98366,essv94285 M 51 5 6 "" 21606,21693,21721,21772,21805,21837,21938,22170,22352,22394 nsv834040 21 9914909 9960850 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455454,nssv1455453,nssv1455451,nssv1455452,nssv1455456,nssv1455460,nssv1455461,nssv1455455,nssv1455459,nssv1455457,nssv1455458,nssv1455463,nssv1455462,nssv1455450,nssv1455448,nssv1455449,nssv1455444,nssv1455443,nssv1455445,nssv1455447,nssv1455446 M 95 0 21 "" nsv437841 21 9928860 10207652 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467722 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19094 dgv67n17 21 9938787 9995200 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437843,nsv437842 M 60 0 2 "" NA19142,NA19173 dgv1348e1 21 9941889 10022975 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv18016,essv18782 M 271 0 0 "" NA12878,NA12891 dgv1349e1 21 9941889 10105718 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1328,essv7881,essv10189,essv17681,essv4309,essv21623,essv17364,essv2706 M 271 0 0 "" NA07348,NA10835,NA18516,NA18517,NA18564,NA18944,NA18973,NA19140 esv720 21 9941889 10197104 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent + Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 "" nsv438312 21 9978594 10033019 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470778,nssv470783,nssv470781,nssv470784,nssv470788,nssv470782,nssv470776,nssv470777,nssv470779,nssv470780,nssv470787,nssv470786 M 269 0 12 Samples from several populations that are part of the HapMap project. "" NA06985,NA07357,NA10835,NA12248,NA12249,NA18562,NA19092,NA19094,NA19140,NA19142,NA19172,NA19173 nsv469643 21 10023841 10187384 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649570 M 265 0 2 Samples from several populations that are part of the HapMap project. "" dgv1350e1 21 10023842 10197104 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv18176,essv15894,essv6137,essv12991,essv10322 M 271 0 0 "" NA12057,NA18506,NA18532,NA18859,NA19223 nsv834041 21 10037729 10121693 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455466,nssv1455465,nssv1455464,nssv1455467 M 95 4 0 "" nsv9838 21 10041840 10149428 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27772,nssv24959,nssv27849,nssv26989,nssv25764,nssv25796,nssv26250,nssv27198,nssv25249,nssv24984,nssv28684,nssv27765,nssv27976,nssv27981 M 31 5 7 Samples from several populations that are part of the HapMap project. "" NA07048,NA11830,NA12155,NA18502,NA18517,NA18552,NA18860,NA18980,NA19173,NA19221,NA19240 nsv471421 21 10079667 10120808 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548232,nssv548234,nssv548235 M 3 "" nsv3451 21 10113335 10138738 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1615 S 9 1 0 "" NA19240 nsv187340 21 10143933 10144079 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv205918 M 24 "" nsv187383 21 10148965 10149146 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv205961 M 24 "" nsv9839 21 10173311 10202652 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27208,nssv25549,nssv24237,nssv26639 M 31 0 4 Samples from several populations that are part of the HapMap project. "" NA18563,NA18942,NA19144,NA19240 nsv834042 21 13270446 13414060 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455468 S 95 1 0 "" esv2751923 21 13291078 14258658 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6982195,essv6989588 M 771 0 1 "" BEC_401 dgv1351e1 21 13354570 14261623 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv23753,essv20873,essv5693,esv703 M 271 0 0 "" NA11994,NA12145,NA18550 nsv9841 21 13359370 13390072 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28685 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19221 nsv442784 21 13374733 13463240 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv834043 21 13417946 13626939 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455469 S 95 1 0 "" nsv438313 21 13483810 13497625 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470789 S 269 0 1 Samples from several populations that are part of the HapMap project. "" NA18550 nsv442489 21 13516106 14070004 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv469583 21 13556403 13707447 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649697 M 265 0 0 Samples from several populations that are part of the HapMap project. "" dgv1352e1 21 13556403 13829460 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv906,essv5347,essv5642 M 271 0 0 "" NA18563,NA18579,NA19000 essv5592 21 13556403 13942143 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18529 dgv36n64 21 13562271 14095717 CNV Loss Wang_et_al_2007 17921354 SNP_array nsv817911,nsv817912 M 112 0 2 "" NA11994,NA18550 nsv515654 21 13562271 14197852 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv660336,nssv662278,nssv695323,nssv694124,nssv683978,nssv679320,nssv700291,nssv676715,nssv657722,nssv672081,nssv660995,nssv664258,nssv682575,nssv660399,nssv684368 M 2026 5 10 "" nsv438314 21 13588035 13603210 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470790 S 269 0 1 Samples from several populations that are part of the HapMap project. "" NA18550 esv33625 21 13600161 13600256 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93765 S 51 0 1 "" 21972 esv34414 21 13613200 13891800 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6979336,essv6979337,essv6990352 M 771 1 0 "" NA18529 essv4110 21 13613238 13749569 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18529 dgv1353e1 21 13634878 14152724 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv24226,essv14569,essv562,essv1726,essv17936,essv4662,essv24664,essv19560,essv4791,essv5450,essv7574,essv16061,essv175,essv10331 M 271 0 0 "" NA10856,NA11829,NA12003,NA12864,NA18501,NA18506,NA18545,NA18594,NA18620,NA18632,NA18968,NA18997,NA18998,NA19202 nsv9842 21 13636612 13665524 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25572 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18563 nsv469555 21 13677345 13829345 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649666 M 265 0 2 Samples from several populations that are part of the HapMap project. "" nsv471707 21 13677346 13829345 CNV Gain+Loss Sharp et al 2005 15918152 BAC_aCGH,FISH Eichler Segmental Duplication BAC array nssv549207,nssv549201,nssv549203,nssv549202,nssv549205,nssv549204,nssv549206 M 48 1 6 "" JK776,NA10469,NA10470,NA10471,NA10493,NA10496,NA17059 nsv459090 21 13690214 13769165 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535922 S 1557 0 1 "" 1798860277_A nsv817913 21 13690214 13895773 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417106 S 112 1 0 "" NA18529 nsv9843 21 13708317 13723932 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22481,nssv27241 M 31 1 1 Samples from several populations that are part of the HapMap project. "" NA12872,NA18504 nsv9844 21 13738070 13740098 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25009,nssv22630,nssv25619 M 31 0 3 Samples from several populations that are part of the HapMap project. "" NA07048,NA12802,NA18564 nsv507910 21 13754606 13760606 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623307 S 4 1 0 "" NA18994 nsv438316 21 13817281 13833806 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470791 S 269 0 1 Samples from several populations that are part of the HapMap project. "" NA18529 essv3511 21 13829460 13933576 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18999 nsv469617 21 13831887 13995202 CNV Gain Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649541 M 265 3 0 Samples from several populations that are part of the HapMap project. "" nsv471708 21 13831888 13995202 CNV Loss Sharp et al 2005 15918152 BAC_aCGH,FISH Eichler Segmental Duplication BAC array nssv549586,nssv549577,nssv549583,nssv549580,nssv549581,nssv549584,nssv549591,nssv549593,nssv549579,nssv549587,nssv549592,nssv549578,nssv549588,nssv549589,nssv549582,nssv549594,nssv549585,nssv549590 M 48 0 18 "" JK1051,JK1058,JK1061,JK1688,NA10470,NA10471,NA10473,NA10492,NA10493,NA10967,NA10971,NA10976,NA11523,NA15724,NA15732,NA17015,NA17051,NA17052 nsv9845 21 13843534 13857163 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25595 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18563 dgv1354e1 21 13850226 14152724 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv838,essv21648 M 271 0 0 "" NA12761,NA18973 nsv9847 21 13856729 13862436 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25642 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18564 nsv9848 21 13869290 13890973 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25664,nssv24263 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA18564,NA18942 dgv1355e1 21 13879419 14043771 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv10519,essv30,essv13581,essv13658,essv21225,essv21809,essv24867,essv22403,essv2898 M 271 0 0 "" NA07000,NA11830,NA11839,NA12875,NA18953,NA18991,NA19119,NA19127,NA19240 nsv834044 21 13879419 14043771 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455477,nssv1455476,nssv1455474,nssv1455471,nssv1455475,nssv1455470,nssv1455472,nssv1455473 M 95 7 1 "" nsv9849 21 13904937 14011178 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27991,nssv27601,nssv27856,nssv27039,nssv28686,nssv26056,nssv27251,nssv27986,nssv26999,nssv27218,nssv25818,nssv24319,nssv25786 M 31 2 9 Samples from several populations that are part of the HapMap project. "" NA11830,NA12155,NA12740,NA18502,NA18504,NA18860,NA18942,NA18980,NA19132,NA19221,NA19240 nsv438317 21 14003728 14020041 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470792,nssv470793 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA10854,NA19161 nsv9850 21 14011178 14015502 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22511,nssv27228 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA12872,NA19240 nsv459093 21 14027356 14137685 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535923 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00513 nsv459094 21 14070504 14137685 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535924 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00007 esv33228 21 14092480 14203407 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100887,essv98251,essv93018,essv98988,essv93638,essv93314,essv100314 M 51 7 0 "" 21656,21772,21863,21938,21972,22170,22300 essv6920 21 14098750 14261623 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18605 nsv3452 21 14140040 14199327 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9601,nssv1616 M 9 0 2 "" NA18507,NA19240 nsv9851 21 14142926 14208339 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27767,nssv27995,nssv25686,nssv25274,nssv28687,nssv27609,nssv25808,nssv27049 M 31 4 4 Samples from several populations that are part of the HapMap project. "" NA12155,NA18552,NA18564,NA18860,NA18972,NA18980,NA19132,NA19221 nsv511067 21 14148114 14167461 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622432 S 4 0 0 "" NA10860 nsv3453 21 14169640 14176151 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6950 S 9 1 0 "" NA12156 nsv3455 21 14181565 14189318 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6951 S 9 1 0 "" NA12156 nsv509786 21 14187012 14187012 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618138 S 4 1 0 "" CHM nsv9852 21 14210702 14212813 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28059 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18860 nsv9853 21 14264213 14271598 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24756 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA10863 esv32571 21 14378136 14389825 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99826 S 51 1 0 "" 22086 nsv527017 21 14398761 14404476 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703392 S 2026 0 1 "" nsv523395 21 14474864 14475901 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699145 S 2026 0 1 "" nsv520538 21 14537091 14582410 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv683210,nssv684758,nssv672267 M 2026 3 0 "" nsv459095 21 14548531 14620679 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535925 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01090 nsv518723 21 14615347 14618142 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696173 S 2026 0 1 "" nsv517231 21 14618073 14618142 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv687819,nssv677216,nssv658475,nssv677736,nssv681000,nssv689897,nssv664257,nssv675176,nssv704478,nssv673207,nssv683747,nssv692837,nssv663799,nssv654076,nssv660937,nssv682235,nssv673569,nssv657617,nssv682808,nssv659503,nssv664922,nssv667600,nssv685421,nssv651947,nssv683170 M 2026 1 24 "" nsv509787 21 14686535 14734014 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621132,nssv618139,nssv619853,nssv623832 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv3456 21 14720189 14752240 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5892,nssv6952,nssv1617,nssv10306,nssv9602,nssv2344,nssv4550 M 9 7 0 "" NA12156,NA12878,NA18507,NA18555,NA18956,NA19129,NA19240 nsv187227 21 14769344 14769408 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv205805 M 24 "" nsv523557 21 14784362 14792042 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699336 S 2026 0 1 "" nsv834045 21 14822549 15034721 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455486,nssv1455480,nssv1455482,nssv1455481,nssv1455487,nssv1455485,nssv1455484,nssv1455488,nssv1455479,nssv1455478,nssv1455483 M 95 0 11 "" nsv834046 21 14825663 14999240 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455489,nssv1455490 M 95 1 1 "" nsv522627 21 14830513 14858374 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv706025 S 2026 1 0 "" nsv3457 21 14918726 14964220 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6953 S 9 0 1 "" NA12156 nsv507911 21 14998397 15004397 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620688,nssv619274,nssv623308,nssv617949 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv187115 21 15197155 15197233 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv205693 M 24 "" nsv834048 21 15246352 15411441 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455491 S 95 1 0 "" nsv517307 21 15304019 15309774 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv673407,nssv653808,nssv680716,nssv651826,nssv663005,nssv685518 M 2026 6 0 "" nsv527611 21 15304019 15321851 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704075 S 2026 0 1 "" nsv523396 21 15369625 15375227 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699146 S 2026 0 1 "" nsv521517 21 15396029 15404514 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698134 S 2026 0 1 "" esv32910 21 15481528 15482292 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv95956 S 51 1 0 "" 22127 esv33078 21 15488368 15489600 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv95140 S 51 1 0 "" 21721 esv32772 21 15509361 15514034 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101524,essv98857,essv101179,essv93872,essv96809,essv101052,essv95148,essv98322,essv94835,essv93992,essv94386,essv95392,essv97351,essv101725,essv94568,essv92894,essv92670,essv93616,essv96103,essv97165,essv98592,essv100052,essv93426,essv93222,essv99622,essv92642,essv97995,essv99342,essv97618,essv100590,essv100397,essv98514,essv96296,essv94182 M 51 0 34 "" 21603,21606,21618,21634,21659,21693,21721,21772,21791,21802,21808,21872,21879,21909,21932,21939,21944,21972,22007,22075,22085,22086,22128,22170,22217,22233,22259,22275,22278,22298,22300,22352,22371,22394 nsv3458 21 15519746 15526601 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7704 S 9 0 1 "" NA12156 nsv442490 21 15546277 15550528 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv3459 21 15615235 15650441 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4551 S 9 1 0 "" NA12878 nsv834049 21 15639292 15827171 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455492 S 95 0 1 "" nsv3460 21 15663865 15682590 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7705 S 9 0 1 "" NA12156 nsv524022 21 15787817 15796612 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699884 S 2026 0 1 "" nsv518934 21 15825896 15825985 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694290 S 2026 0 1 "" nsv519258 21 15825896 15826379 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696752 S 2026 0 1 "" dgv1356e1 21 15834517 16018549 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1397,esv216 M 271 0 0 "" NA19007 nsv528246 21 15857759 15901910 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704810 S 2026 0 1 "" nsv459099 21 15878737 16066882 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535926 S 1557 1 0 "" 1780854261_A nsv817914 21 15922491 15932650 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417956 S 112 1 0 "" NA18852 nsv507912 21 15973637 15979637 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620689,nssv619275 M 4 2 0 "" NA10860,NA15510 nsv834050 21 16067961 16270822 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455493 S 95 1 0 "" nsv3461 21 16087209 16118275 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10307 S 9 1 0 "" NA18956 nsv3462 21 16125466 16158278 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5893 S 9 1 0 "" NA19129 nsv3463 21 16248990 16265329 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7707 S 9 0 1 "" NA12156 nsv521877 21 16313460 16325248 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694648 S 2026 1 0 "" nsv527854 21 16322787 16381378 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704352 S 2026 0 1 "" nsv834051 21 16486714 16643635 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455495,nssv1455494 M 95 2 0 "" esv32643 21 16582399 16583116 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98897 S 51 1 0 "" 21606 nsv521068 21 16586547 16589650 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv681221,nssv694035,nssv702231 M 2026 0 3 "" nsv527885 21 16680713 16681051 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704387 S 2026 0 1 "" nsv817915 21 16693940 16696927 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417268 S 112 0 1 "" NA18593 nsv459101 21 16716303 16740907 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535927 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00925 nsv187426 21 16858928 16858928 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv206004 M 24 "" nsv510494 21 16872400 16878400 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622319 S 4 0 1 "" NA10860 nsv834052 21 16889256 17064095 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455498,nssv1455496,nssv1455497 M 95 1 2 "" nsv459102 21 16961016 16972413 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535928 S 1557 1 0 "" 1780854017_A nsv520583 21 16979504 16988078 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697503 S 2026 0 1 "" nsv3464 21 17000129 17044960 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7708 S 9 0 1 "" NA12156 esv2751924 21 17091368 17463400 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6981784,essv6981783,essv6989261,essv6989514,essv6989515 M 771 0 1 "" BEC_468 nsv527753 21 17163946 17292877 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704240 S 2026 0 1 "" nsv525388 21 17214168 17215449 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701510 S 2026 0 1 "" nsv187028 21 17219294 17219344 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv205606 M 24 "" nsv834053 21 17291385 17422800 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455499 S 95 1 0 "" nsv519272 21 17354907 17355249 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv655152,nssv663485 M 2026 0 2 "" nsv834054 21 17457554 17628890 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455501,nssv1455500 M 95 0 2 "" nsv507913 21 17478741 17484741 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617950,nssv620690,nssv623309 M 4 3 0 "" CHM,NA15510,NA18994 nsv3466 21 17519645 17537717 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7709 S 9 1 0 "" NA12156 nsv509788 21 17528107 17544478 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621133 S 4 1 0 "" NA15510 nsv521976 21 17642038 17646022 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694743 S 2026 0 1 "" nsv507914 21 17762163 17768163 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617951,nssv620691,nssv623310,nssv619276 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv187304 21 17768808 17778329 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv205882 M 24 "" nsv834055 21 17939266 18180561 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455502 S 95 1 0 "" nsv516831 21 17966106 17968624 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv656185,nssv672495,nssv687725,nssv654290,nssv671716 M 2026 0 5 "" nsv3467 21 17994559 17998812 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10308 S 9 1 0 "" NA18956 nsv3468 21 18016304 18035171 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4552,nssv7710 M 9 2 0 "" NA12156,NA12878 nsv509789 21 18022378 18026796 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623833,nssv619854,nssv621134 M 4 3 0 "" NA10860,NA15510,NA18994 nsv522920 21 18126666 18148695 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698581 S 2026 0 1 "" nsv517400 21 18269051 18272979 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv686052,nssv651908,nssv660060 M 2026 0 3 "" nsv459104 21 18279250 18303003 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535929 S 1557 0 1 "" NINDS_99 esv2751925 21 18329683 21294600 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6984061,essv6984062,essv6984063,essv6984064,essv6989908,essv6989907,essv6989410 M 771 0 1 "" BEC_765 nsv3469 21 18353401 18376756 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1619 S 9 1 0 "" NA19240 nsv509791 21 18436516 18458122 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619855 S 4 1 0 "" NA10860 nsv510495 21 18455122 18461122 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621503 S 4 0 1 "" NA15510 nsv459105 21 18532034 18576669 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535930 S 1557 0 1 "" 1780862432_A nsv187307 21 18599811 18599811 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv205885 M 24 "" nsv518906 21 18602200 18607276 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696364 S 2026 0 1 "" nsv522137 21 18611032 18612661 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694911 S 2026 0 1 "" nsv3470 21 18612249 18645451 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5894 S 9 1 0 "" NA19129 nsv522760 21 18640775 18641297 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698399 S 2026 0 1 "" nsv459106 21 18675377 18705763 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535931 S 1557 0 1 "" 1787431198_A nsv459109 21 18701945 18728352 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535933 S 1557 0 1 "" NINDS_186 esv2422442 21 18779734 18898359 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161463 S 181 1 0 "" ND05536 nsv510789 21 18899245 18931563 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619013 S 4 0 1 "" NA10860 nsv510496 21 18922869 18928869 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618459,nssv621504,nssv624251 M 4 0 3 "" CHM,NA15510,NA18994 nsv3471 21 18923692 18953705 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5895 S 9 1 0 "" NA19129 dgv524n27 21 18976313 19005090 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv459113,nsv459110,nsv459114,nsv459111 M 1557 4 0 "" HGDP00641,HGDP00856,HGDP00873,HGDP01074 nsv517044 21 18976313 19005090 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv668616,nssv682177,nssv685071,nssv657323,nssv662656,nssv684973,nssv691191,nssv680323,nssv659666,nssv693036,nssv652249,nssv691697,nssv685270,nssv676113,nssv662231,nssv683437,nssv653681,nssv667546,nssv677305,nssv656730,nssv673269,nssv670821,nssv690915 M 2026 23 0 "" dgv525n27 21 18976313 19012950 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv459115,nsv459112 M 1557 2 0 "" HGDP01059,NINDS_271 nsv459116 21 19049702 19073014 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535940 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00920 nsv834056 21 19211400 19368540 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455503 S 95 0 1 "" nsv834057 21 19354493 19530031 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455504 S 95 0 1 "" nsv3472 21 19391685 19417850 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4553 S 9 1 0 "" NA12878 nsv507915 21 19497193 19503193 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619277 S 4 1 0 "" NA10860 dgv1357e1 21 19561892 19565214 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1230,essv603 M 271 0 0 "" NA18947 dgv1358e1 21 19626353 19677375 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv6065,esv1387 M 271 0 0 "" NA18603 nsv459117 21 19632507 19693752 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535941 S 1557 0 1 "" 1798860113_A nsv9854 21 19656328 19668153 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28688 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19221 nsv3473 21 19734357 19773065 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5896 S 9 0 1 "" NA19129 dgv526n27 21 19769652 19814361 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv459118,nsv459120 M 1557 0 2 "" 1780854293_A,1798860565_A nsv459121 21 19843219 19863784 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535945 S 1557 0 1 "" 1780862194_A dgv527n27 21 19883678 19920515 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv459122,nsv459123 M 1557 0 2 "" HGDP00470,HGDP01094 nsv524831 21 19890542 19919785 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700832 S 2026 1 0 "" nsv817916 21 19919785 19947130 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416898 S 112 1 0 "" NA19239 nsv526430 21 19934102 20303341 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702733 S 2026 1 0 "" nsv459124 21 19965043 19990054 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535948 S 1557 0 1 "" NINDS_142 nsv3474 21 19975756 20007076 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv11042 S 9 1 0 "" NA15510 nsv817918 21 20121403 20122483 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417388 S 112 0 1 "" NA18949 nsv459125 21 20122483 20170482 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535949 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00187 nsv527855 21 20153174 20200988 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704353 S 2026 0 1 "" nsv519310 21 20155124 20170482 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv684336,nssv655560,nssv655332,nssv689734,nssv691698 M 2026 5 0 "" nsv522650 21 20155124 20173884 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv706050 S 2026 0 1 "" nsv515595 21 20224230 20261725 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv657209,nssv691914,nssv679543,nssv682945,nssv692062,nssv704732,nssv664039,nssv690185,nssv674124,nssv672003,nssv659052,nssv682626,nssv692920,nssv689675,nssv685910 M 2026 3 12 "" nsv834059 21 20378406 20569736 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455505 S 95 0 1 "" nsv187443 21 20436950 20436950 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv206021 M 24 "" nsv187066 21 20516103 20517073 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv205644 M 24 "" nsv9855 21 20637505 20638493 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25302 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18853 dgv1359e1 21 20637992 20877335 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv12341,esv622,essv11861,essv15831 M 271 0 0 "" NA19138,NA19221,NA19223 nsv459127 21 20684789 20787437 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535950 S 1557 0 1 "" 1780854318_A dgv1360e1 21 20716906 20811712 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv9522,essv11054,essv8005 M 271 0 0 "" NA19138,NA19221,NA19223 nsv437844 21 20718706 20755295 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467725 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19221 nsv9856 21 20721169 20767739 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28689 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19221 nsv442491 21 20722523 20757493 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv171e55 21 20722676 20801025 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv34447,esv35007 M 771 0 2 "" NA19138,NA19221 dgv528n27 21 20723899 20766470 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv459131,nsv459128,nsv459129 M 1557 0 3 "" HGDP00620,HGDP00933,HGDP00934 nsv517240 21 20723899 20766470 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv660786,nssv653719,nssv662767,nssv673874,nssv663129 M 2026 0 5 "" nsv817919 21 20723899 20766470 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416989 S 112 0 1 "" NA19138 nsv437845 21 20755295 20767978 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467726 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19221 nsv187191 21 20762733 20762733 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv205769 M 24 "" nsv9858 21 20768211 20773785 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27863 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18502 nsv523695 21 20790752 20934272 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699502 S 2026 0 1 "" nsv834060 21 20794721 20907647 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455506 S 95 1 0 "" nsv834061 21 20801914 20976458 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455531,nssv1455534,nssv1455553,nssv1455525,nssv1455541,nssv1455519,nssv1455533,nssv1455532,nssv1455540,nssv1455535,nssv1455536,nssv1455538,nssv1455537,nssv1455539,nssv1455542,nssv1455545,nssv1455544,nssv1455543,nssv1455552,nssv1455546,nssv1455551,nssv1455550,nssv1455547,nssv1455548,nssv1455558,nssv1455554,nssv1455557,nssv1455556,nssv1455555,nssv1455560,nssv1455563,nssv1455559,nssv1455562,nssv1455561,nssv1455517,nssv1455516,nssv1455524,nssv1455518,nssv1455509,nssv1455508,nssv1455514,nssv1455512,nssv1455510,nssv1455507,nssv1455530,nssv1455522,nssv1455527,nssv1455520,nssv1455526,nssv1455515,nssv1455513,nssv1455529,nssv1455549,nssv1455528,nssv1455511,nssv1455521,nssv1455523 M 95 52 5 "" nsv523447 21 20825348 20825669 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699203 S 2026 0 1 "" nsv520620 21 20825348 20827191 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697522 S 2026 0 1 "" nsv187455 21 20881307 20882147 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv206033 M 24 "" nsv442786 21 20927716 20932562 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv821690 21 21064510 21497774 CNV Loss Sebat_et_al_2004 15273396 ROMA Custom Nimblegen photoprint 85000 probe ROMA oligo array nssv1421328 S 31 0 1 "" nsv526431 21 21080481 21118944 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702734 S 2026 1 0 "" nsv459132 21 21185462 21243999 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535954 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00041 nsv520445 21 21242747 21243999 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697424 S 2026 1 0 "" nsv9859 21 21348175 21350568 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22815 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18572 nsv507916 21 21389018 21395018 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620692,nssv619278,nssv623311 M 4 3 0 "" NA10860,NA15510,NA18994 nsv521484 21 21743514 21750502 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698095 S 2026 0 1 "" nsv817920 21 21809131 21828206 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417255 S 112 1 0 "" NA18577 nsv459135 21 21812513 21833891 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv535955 S 1557 0 1 "" NINDS_96 nsv510497 21 21821432 21827432 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622320,nssv621505 M 4 0 2 "" NA10860,NA15510 nsv526114 21 21898416 21899643 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702364 S 2026 0 1 "" nsv437189 21 21931454 21948099 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467070 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA12753 nsv510498 21 22051664 22057664 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622321,nssv624252 M 4 0 2 "" NA10860,NA18994 nsv834062 21 22054086 22199495 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455564 S 95 0 1 "" nsv9860 21 22108337 22110201 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27779,nssv26268,nssv25327 M 31 0 3 Samples from several populations that are part of the HapMap project. "" NA18517,NA18853,NA19173 nsv515775 21 22113405 22123875 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv664736,nssv686165,nssv681196,nssv665227,nssv686743,nssv685847,nssv661019,nssv683782 M 2026 0 8 "" nsv525158 21 22113405 22130475 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701231 S 2026 0 1 "" nsv525252 21 22130855 22139503 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701347 S 2026 0 1 "" dgv251n21 21 22139503 22139774 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv525408,nsv519598 M 2026 0 2 "" nsv515991 21 22228751 22240786 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv685461,nssv671231,nssv662536,nssv676936,nssv675941,nssv654673,nssv665616,nssv681533,nssv677578 M 2026 0 9 "" dgv1361e1 21 22433789 22596775 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1044,essv2413 M 271 0 0 "" NA18951 nsv3475 21 22526655 22563588 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3070,nssv1620,nssv5897 M 9 3 0 "" NA18555,NA19129,NA19240 dgv1362e1 21 22535203 22596775 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2567,essv2150,essv2912,essv6108,essv6445,essv24639,essv23643,essv3332,essv3610 M 271 0 0 "" NA07055,NA10846,NA18573,NA18592,NA18948,NA18969,NA18974,NA18978,NA19007 dgv1363e1 21 22545897 22586139 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1048,essv1087,essv3636,essv715,essv2707,essv17,essv4350,essv1708 M 271 0 0 "" NA18622,NA18940,NA18944,NA18945,NA18966,NA18968,NA18975,NA18990 nsv3477 21 22563480 22601930 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2345 S 9 0 1 "" NA18555 dgv1364e1 21 22564731 22586139 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv3647,essv6803,essv181,essv1803 M 271 0 0 "" NA18594,NA18971,NA18991,NA18994 dgv1365e1 21 22564731 22596775 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv961,essv3586,essv4095,essv2374,essv3499,essv755,essv6541,essv7491,essv1539,essv4211,essv5858,essv23738,essv21497,essv927,essv1641 M 271 0 0 "" NA12003,NA12813,NA18529,NA18555,NA18561,NA18609,NA18624,NA18949,NA18961,NA18981,NA18987,NA18995,NA18999,NA19003,NA19012 nsv510499 21 22573039 22579039 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624254 S 4 0 1 "" NA18994 nsv510790 21 22576039 22588643 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617444,nssv620165 M 4 0 2 "" CHM,NA15510 nsv9861 21 22576051 22588718 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25000,nssv25618,nssv25299,nssv27774,nssv22844,nssv25743 M 31 0 6 Samples from several populations that are part of the HapMap project. "" NA18552,NA18563,NA18572,NA18972,NA18975,NA19007 dgv529n27 21 22576805 22583706 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv459137,nsv459164,nsv459169,nsv459179,nsv459148,nsv459166,nsv459195,nsv459160,nsv459162,nsv459187,nsv459168,nsv459161,nsv459146,nsv459159,nsv459167,nsv459151,nsv459193,nsv459184,nsv459170,nsv459178,nsv459165,nsv459150,nsv459192,nsv459188,nsv459138,nsv459149,nsv459155,nsv459173,nsv459186,nsv459142,nsv459175,nsv459158,nsv459140,nsv459147,nsv459157,nsv459139,nsv459136,nsv459182,nsv459145,nsv459154,nsv459190,nsv459143,nsv459171,nsv459180,nsv459153,nsv459194,nsv459181,nsv459176,nsv459172,nsv459191,nsv459183,nsv459144,nsv459177,nsv459156,nsv459189 M 1557 0 55 "" 1780854384_A,1782681179_A,HGDP00199,HGDP00515,HGDP00541,HGDP00544,HGDP00546,HGDP00548,HGDP00550,HGDP00551,HGDP00553,HGDP00556,HGDP00565,HGDP00577,HGDP00663,HGDP00748,HGDP00749,HGDP00752,HGDP00756,HGDP00758,HGDP00764,HGDP00765,HGDP00768,HGDP00771,HGDP00780,HGDP00786,HGDP00812,HGDP00814,HGDP00890,HGDP00954,HGDP00976,HGDP01021,HGDP01103,HGDP01104,HGDP01187,HGDP01211,HGDP01214,HGDP01218,HGDP01223,HGDP01242,HGDP01288,HGDP01290,HGDP01297,HGDP01303,HGDP01307,HGDP01310,HGDP01312,HGDP01336,HGDP01338,HGDP01345,HGDP01349,HGDP01353,HGDP01384,NINDS_73,NINDS_82 nsv442787 21 22577638 22586527 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv817921 21 22577771 22583706 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416115,nssv1417440,nssv1417630,nssv1417482,nssv1417693,nssv1417389,nssv1417614,nssv1417411,nssv1417340,nssv1417236,nssv1417565,nssv1417138 M 112 0 12 "" NA12813,NA18542,NA18577,NA18609,NA18949,NA18951,NA18953,NA18965,NA18972,NA18978,NA18987,NA18999 dgv1366e1 21 22577771 22586139 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2939,essv1331,essv2385,essv20860,essv5659,essv5434,essv5841,essv3845,essv6211,essv6852,essv5977,essv6511,essv4529,essv4510,essv2755,essv6491,essv6055,essv6093,essv7658,essv5947,essv601,essv3945,essv2745 M 271 0 0 "" NA12145,NA18524,NA18526,NA18542,NA18552,NA18558,NA18563,NA18566,NA18572,NA18577,NA18603,NA18621,NA18623,NA18632,NA18636,NA18947,NA18953,NA18965,NA18970,NA18972,NA18973,NA18976,NA19000 nsv516830 21 22577771 22594581 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv678303,nssv666695,nssv661471,nssv680203,nssv675544,nssv689460,nssv681648,nssv660787,nssv656475,nssv652938,nssv670689,nssv656306,nssv680885,nssv674879,nssv683025,nssv657051,nssv672901,nssv662861,nssv689627,nssv664874,nssv683622,nssv664040,nssv653245,nssv674936,nssv665451,nssv656573,nssv691457,nssv654379,nssv673066,nssv689584,nssv674852,nssv691206,nssv671895,nssv667846,nssv676386,nssv677493,nssv690567,nssv669053,nssv685537,nssv658018,nssv687479,nssv661204,nssv682268,nssv672485,nssv653465,nssv677217,nssv689978,nssv668881,nssv683929,nssv685616,nssv668386,nssv654886,nssv658095,nssv664219,nssv652979,nssv688204,nssv659941,nssv690002,nssv672737,nssv668080,nssv676640,nssv680454,nssv670718,nssv687639,nssv664432,nssv679142,nssv693749,nssv669218,nssv666675,nssv670557,nssv681553,nssv654808,nssv652019,nssv671178,nssv653371,nssv674780,nssv662255,nssv652103,nssv666106,nssv657888 M 2026 2 78 "" dgv1367e1 21 22577771 22596775 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv7521,essv5705 M 271 0 0 "" NA18532,NA18550 dgv252n21 21 22741406 22867083 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv515966,nsv523724 M 2026 0 6 "" nsv834063 21 22926616 23138461 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455565 S 95 1 0 "" nsv517533 21 22942104 22964940 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv681060,nssv663560,nssv652288 M 2026 0 3 "" nsv518564 21 23016809 23130703 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696008 S 2026 0 1 "" nsv3478 21 23096154 23163547 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9367 S 9 0 1 "" NA18517 nsv442492 21 23098732 23132654 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv433175 21 23099838 23107078 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463056 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA18517 nsv517004 21 23099838 23130703 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv664314,nssv671854,nssv675264,nssv673793,nssv681197,nssv660540,nssv672053,nssv681854,nssv664923,nssv674985,nssv653601,nssv678194,nssv674478,nssv682541,nssv679434,nssv675026,nssv678012,nssv681308 M 2026 0 18 "" nsv817922 21 23099838 23130703 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416991,nssv1416990,nssv1416518 M 112 0 3 "" NA18517,NA19137,NA19139 nsv817923 21 23099838 23150584 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416417 S 112 0 1 "" NA18856 nsv528543 21 23231640 23261439 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705155 S 2026 0 1 "" nsv523780 21 23255492 23329396 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699603 S 2026 0 1 "" nsv507917 21 23292307 23298307 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623312,nssv620693 M 4 2 0 "" NA15510,NA18994 nsv527459 21 23293077 23298509 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703901 S 2026 0 1 "" nsv187261 21 23296668 23297282 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv205839 M 24 "" nsv817924 21 23306003 23373171 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416419 S 112 0 1 "" NA18855 nsv459199 21 23314957 23347097 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536015 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00092 nsv517294 21 23314957 23373171 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv666828,nssv654228,nssv684367,nssv671232,nssv684651,nssv679199,nssv670372,nssv690868,nssv679474,nssv657560,nssv686166,nssv689311,nssv675640,nssv667978,nssv665749,nssv689022,nssv692382,nssv687329,nssv683143,nssv703834,nssv677026,nssv690075,nssv679593,nssv673088,nssv668816,nssv692082,nssv664124,nssv659115,nssv669382,nssv662537,nssv683239,nssv673875,nssv675942,nssv688226,nssv680886,nssv682886,nssv679999 M 2026 0 37 "" dgv1368e1 21 23320362 23512054 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv17378,esv940 M 271 0 0 "" NA18855 esv35022 21 23321000 23372706 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6979881,essv6988260 M 771 0 1 "" NA18855 nsv437847 21 23338997 23360640 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467728 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19161 nsv459200 21 23345177 23347197 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536016 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01411 nsv817925 21 23345177 23352592 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416992,nssv1416993,nssv1416819,nssv1416372,nssv1416519,nssv1416418,nssv1416420,nssv1416520,nssv1416818 M 112 0 9 "" NA18515,NA18516,NA18856,NA18857,NA19138,NA19139,NA19140,NA19159,NA19161 nsv438318 21 23345578 23354462 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470795,nssv470797,nssv470794 M 269 0 3 Samples from several populations that are part of the HapMap project. "" NA18506,NA18508,NA18523 nsv459201 21 23347097 23352592 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536017 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00931 nsv442788 21 23351419 23355207 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv511068 21 23377907 23394779 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622434 S 4 0 0 "" NA10860 nsv459202 21 23380614 23473480 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536018 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00725 nsv507918 21 23387577 23393577 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620694,nssv623313 M 4 2 0 "" NA15510,NA18994 essv7668 21 23400864 23430325 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18632 nsv515538 21 23421443 23561264 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv663858,nssv689244,nssv682809,nssv655451,nssv682680,nssv666033,nssv654324,nssv685377 M 2026 0 8 "" esv33809 21 23421656 23524795 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv96454 S 51 0 1 "" 22261 nsv187040 21 23498634 23498687 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv205618 M 24 "" nsv187322 21 23498660 23498715 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv205900 M 24 "" nsv3479 21 23598247 23627924 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10309 S 9 1 0 "" NA18956 nsv519622 21 23605342 23632073 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv692942,nssv657100,nssv679644,nssv695856,nssv697146,nssv681534 M 2026 0 6 "" nsv511069 21 23660605 23697020 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621660 S 4 0 0 "" NA15510 nsv528530 21 23709931 23746337 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705141 S 2026 0 1 "" nsv517650 21 23753051 23809711 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696731,nssv663339,nssv655385,nssv673189,nssv664315,nssv656804,nssv685490,nssv678055,nssv652667,nssv681198,nssv683951,nssv694452,nssv653390,nssv657561,nssv675732,nssv678147,nssv689512,nssv660627 M 2026 0 18 "" nsv528736 21 23761888 24107000 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705392 S 2026 0 1 "" nsv526987 21 23840748 23858500 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703360 S 2026 0 1 "" nsv507919 21 24029601 24035601 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623314,nssv617952,nssv620695 M 4 3 0 "" CHM,NA15510,NA18994 nsv834064 21 24070645 24251717 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455566 S 95 0 1 "" esv2422301 21 24077624 24332553 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161533 S 181 1 0 "" ND04104 nsv519047 21 24183713 24197284 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696518 S 2026 0 1 "" nsv442493 21 24218044 24221560 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv459208 21 24305703 24343408 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536019 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00638 nsv507920 21 24322761 24328761 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617953,nssv620696 M 4 2 0 "" CHM,NA15510 nsv510500 21 24410413 24416413 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621506 S 4 0 1 "" NA15510 nsv527417 21 24432164 24449708 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703855 S 2026 1 0 "" dgv530n27 21 24475083 24513223 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv459209,nsv459210 M 1557 2 0 "" HGDP01207,HGDP01240 nsv438319 21 24477775 24500652 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470798 S 269 0 1 Samples from several populations that are part of the HapMap project. "" NA18579 nsv524792 21 24477775 24513223 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700784 S 2026 1 0 "" dgv1369e1 21 24483440 24515887 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1223,essv5647 M 271 0 0 "" NA18579 nsv523388 21 24634717 24682726 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699137 S 2026 0 1 "" nsv515539 21 24692463 24695412 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv655452,nssv682681,nssv663859 M 2026 0 3 "" nsv522112 21 24744845 24765417 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694884 S 2026 1 0 "" nsv526728 21 24896154 24899522 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703069 S 2026 0 1 "" nsv518444 21 24946353 24948167 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695881 S 2026 1 0 "" nsv834065 21 25040290 25205270 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455568,nssv1455567 M 95 2 0 "" nsv459213 21 25154439 25227401 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536022 S 1557 0 1 "" NINDS_147 nsv522561 21 25249822 25252226 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705944 S 2026 0 1 "" nsv834066 21 25340087 25515908 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455569 S 95 1 0 "" nsv459214 21 25431539 25459035 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536023 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00543 nsv834067 21 25481429 25638126 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455570 S 95 0 1 "" nsv3480 21 25498423 25531950 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1621 S 9 1 0 "" NA19240 nsv510791 21 25739234 25792716 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619014 S 4 0 1 "" NA10860 nsv187229 21 25747018 25747284 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv205807 M 24 "" nsv510501 21 25896419 25902419 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618460,nssv624255,nssv622322 M 4 0 3 "" CHM,NA10860,NA18994 nsv522061 21 25926920 25931195 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694832 S 2026 0 1 "" nsv459215 21 26090514 26154069 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536024 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00525 nsv442494 21 26097651 26100417 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv531n27 21 26116740 26158485 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv459216,nsv459217 M 1557 0 2 "" HGDP00752,HGDP00769 nsv518566 21 26116740 26163866 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696009 S 2026 0 1 "" nsv459220 21 26117260 26138228 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536028 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00791 nsv187435 21 26154828 26160728 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv206013 M 24 "" nsv510502 21 26308617 26314617 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618461 S 4 0 1 "" CHM nsv526774 21 26376866 26384598 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703126 S 2026 0 1 "" nsv524877 21 26533077 26541436 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700883 S 2026 0 1 "" nsv524976 21 26557022 26558958 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701004 S 2026 0 1 "" nsv507921 21 26589463 26595463 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619279,nssv623315,nssv617954 M 4 3 0 "" CHM,NA10860,NA18994 nsv817926 21 26704839 26704973 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417123 S 112 0 1 "" NA18537 nsv3481 21 26755106 26789678 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3071 S 9 1 0 "" NA18555 nsv515955 21 26947332 26948370 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv679475,nssv666133,nssv656706,nssv656805,nssv667347,nssv665452,nssv661882 M 2026 0 7 "" nsv510503 21 26989239 26995239 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621507 S 4 0 1 "" NA15510 nsv459223 21 26991908 27014402 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536029 S 1557 0 1 "" 1780854459_A nsv834068 21 27101541 27282679 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455571 S 95 0 1 "" nsv437848 21 27112269 27125539 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467729 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18872 nsv3482 21 27113168 27143846 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4661 S 9 0 1 "" NA19129 nsv517005 21 27116745 27122320 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv677872,nssv670049,nssv667068,nssv687297,nssv671645,nssv654590,nssv655308,nssv676487,nssv656285,nssv666440,nssv665803,nssv692034,nssv668210,nssv682296,nssv670511,nssv655153,nssv680046,nssv685209,nssv663340,nssv688526,nssv689312,nssv669383,nssv655757,nssv685422,nssv661020,nssv688266,nssv666652,nssv673190,nssv680748,nssv663949,nssv660900,nssv672054,nssv660383,nssv677056,nssv666211,nssv688205,nssv686338,nssv657993,nssv687589,nssv697761,nssv664145,nssv658622,nssv682682,nssv658189,nssv676114,nssv680574,nssv675566,nssv661719,nssv659754,nssv686744,nssv691484,nssv690739,nssv652581,nssv686225,nssv656544,nssv652138,nssv693911,nssv659966,nssv656515,nssv693501,nssv661414,nssv663486,nssv665537,nssv658072,nssv685695,nssv653866,nssv690452,nssv661205,nssv673223,nssv658212,nssv690480,nssv671717,nssv686643,nssv661300,nssv675905,nssv679678,nssv673679,nssv677094,nssv677507,nssv680486,nssv685964,nssv657790,nssv684229,nssv676425,nssv660541,nssv662327,nssv692550,nssv689676,nssv693063,nssv663304,nssv669304,nssv690014,nssv656979,nssv672421,nssv682520,nssv683085,nssv676086,nssv690869,nssv683761,nssv683363,nssv673590,nssv682096,nssv668976,nssv692711,nssv667528,nssv658768,nssv692993,nssv685491,nssv687726,nssv693106,nssv687562,nssv679876,nssv674479,nssv653058,nssv686580,nssv662967,nssv675886,nssv679049,nssv690076,nssv682810,nssv692943,nssv672496,nssv687653,nssv689918,nssv671475,nssv655087,nssv653602,nssv680516,nssv693413,nssv685732,nssv686623,nssv660335,nssv675230,nssv655939,nssv668179,nssv664924,nssv673311,nssv661793,nssv687614 M 2026 0 139 "" nsv459224 21 27117916 27120255 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536030 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00927 dgv532n27 21 27117916 27122320 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv459228,nsv459225,nsv459227,nsv459226 M 1557 0 4 "" HGDP00454,HGDP00471,HGDP01201,HGDP01274 nsv438320 21 27117916 27122320 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470799 S 269 0 1 Samples from several populations that are part of the HapMap project. "" NA19099 nsv817927 21 27117916 27122320 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416899,nssv1416618 M 112 0 2 "" NA19172,NA19239 nsv528278 21 27137937 27141178 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704848 S 2026 1 0 "" nsv187378 21 27270522 27270581 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv205956 M 24 "" nsv3483 21 27272270 27306191 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7711 S 9 1 0 "" NA12156 dgv1370e1 21 27302101 27462314 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv12770,esv150 M 271 0 0 "" NA19120 nsv459229 21 27465327 28404359 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536035 S 1557 1 0 "" 1780862076_A nsv459231 21 27465586 27485366 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536036 S 1557 0 1 "" 1780854459_A nsv834070 21 27468616 27631821 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455572 S 95 1 0 "" nsv187036 21 27503648 27503699 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv205614 M 24 "" nsv507922 21 27654884 27660884 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620697,nssv619280 M 4 2 0 "" NA10860,NA15510 nsv834071 21 27728782 27910751 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455573 S 95 1 0 "" dgv533n27 21 27907420 27915809 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv459233,nsv459232 M 1557 0 2 "" 1780846030_A,1780862074_A nsv520685 21 27907420 27915809 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv675027,nssv685560,nssv674055 M 2026 0 3 "" nsv834072 21 28250941 28415662 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455574 S 95 0 1 "" nsv522198 21 28434457 28670848 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694971 S 2026 1 0 "" nsv507923 21 28486233 28492233 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619281,nssv623316,nssv617955 M 4 3 0 "" CHM,NA10860,NA18994 nsv459234 21 28605334 28761264 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536039 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01162 nsv3484 21 28754394 28788415 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3072 S 9 1 0 "" NA18555 nsv187168 21 28967850 28968107 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv205746 M 24 "" nsv521545 21 29037770 29056670 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698161 S 2026 0 1 "" nsv523748 21 29046541 29054948 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699565 S 2026 0 1 "" nsv527476 21 29050466 29054948 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703920 S 2026 0 1 "" nsv9862 21 29136621 29189127 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25765,nssv26204 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA18537,NA19007 dgv1371e1 21 29161064 29191388 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2921,esv1337 M 271 0 0 "" NA19007 nsv3485 21 29362314 29407057 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7712 S 9 0 1 "" NA12156 nsv3486 21 29378851 29414146 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1622 S 9 1 0 "" NA19240 nsv187427 21 29407822 29412380 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv206005 M 24 "" nsv509792 21 29409445 29417110 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619856,nssv621135,nssv623834,nssv618140 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv516083 21 29411171 29416121 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv677579,nssv678030,nssv666107 M 2026 0 3 "" nsv521462 21 29452563 29464331 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698072 S 2026 1 0 "" nsv187074 21 29523697 29524036 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv205652 M 24 "" nsv3488 21 29540272 29584664 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4662 S 9 0 1 "" NA19129 nsv834073 21 29681011 29848029 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455575 S 95 1 0 "" nsv528222 21 29879378 29880620 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704783 S 2026 0 1 "" nsv834074 21 30059098 30270134 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455576 S 95 0 1 "" nsv459235 21 30211802 30475284 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536040 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01185 nsv834075 21 30235546 30395434 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455577 S 95 0 1 "" nsv834076 21 30510691 30677617 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455578 S 95 1 0 "" nsv507924 21 30541344 30547344 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621977,nssv620698,nssv623317 M 4 3 0 "" NA10860,NA15510,NA18994 esv34362 21 30559029 30564300 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6979935,essv6979936 M 771 0 1 "" NA18861 nsv459236 21 30559173 30574043 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536041 S 1557 0 1 "" 1782681092_A nsv523122 21 30559173 30574043 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698822 S 2026 0 1 "" nsv442495 21 30561523 30564727 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv517100 21 30604450 30604793 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv658658,nssv670558,nssv664407,nssv680192,nssv693013,nssv665710,nssv663561,nssv682986,nssv681467,nssv677195,nssv660489,nssv651984,nssv653788,nssv661230,nssv663152,nssv655036,nssv661152 M 2026 0 17 "" nsv459237 21 31008194 31146805 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536042 S 1557 1 0 "" 1780854261_A nsv187250 21 31014747 31014992 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv205828 M 24 "" nsv834077 21 31052692 31215768 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455579 S 95 1 0 "" nsv518454 21 31136526 31221754 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694238 S 2026 0 1 "" nsv834078 21 31141846 31308696 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455580 S 95 1 0 "" nsv528253 21 31142977 31146805 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704819 S 2026 1 0 "" nsv517146 21 31262770 31268708 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv690762,nssv673512,nssv653867,nssv653260,nssv680749 M 2026 0 5 "" nsv524313 21 31268708 31284249 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700215 S 2026 0 1 "" nsv527158 21 31287785 31300348 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703551 S 2026 0 1 "" nsv3489 21 31298244 31318359 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3073 S 9 1 0 "" NA18555 esv33508 21 31336274 31337088 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98860 S 51 0 1 "" 21606 esv32755 21 31337700 31424326 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93294 S 51 1 0 "" 22170 nsv442496 21 31354121 31356175 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv459238 21 31673618 31697210 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536043 S 1557 1 0 "" 1798860306_A nsv525026 21 31737828 31749567 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701066 S 2026 0 1 "" nsv519899 21 31803559 31985225 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697114 S 2026 1 0 "" nsv3490 21 31874024 31911235 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7713 S 9 0 1 "" NA12156 nsv507925 21 31885059 31891059 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620699 S 4 1 0 "" NA15510 nsv834079 21 31898817 32075731 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455581 S 95 0 1 "" nsv510792 21 31987852 32055149 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622799,nssv619015 M 4 0 2 "" NA10860,NA18994 nsv834081 21 32034431 32203364 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455582 S 95 0 1 "" nsv3491 21 32074432 32108026 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7714 S 9 1 0 "" NA12156 nsv834082 21 32080140 32266308 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455588,nssv1455585,nssv1455586,nssv1455583,nssv1455584,nssv1455593,nssv1455589,nssv1455592,nssv1455594,nssv1455587,nssv1455591,nssv1455590 M 95 12 0 "" nsv510793 21 32123128 32207067 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622800 S 4 0 1 "" NA18994 nsv187351 21 32147676 32147934 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv205929 M 24 "" dgv1372e1 21 32151463 32438711 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv11586,essv16851,esv135 M 271 0 0 "" NA19173,NA19205 nsv3492 21 32236454 32268082 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5898 S 9 1 0 "" NA19129 nsv518119 21 32244690 32250400 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695536 S 2026 0 1 "" esv2751926 21 32341500 32385717 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6986278,essv6982833,essv6982834 M 771 1 0 "" BEC_603 nsv834083 21 32351571 32513960 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455596,nssv1455595 M 95 2 0 "" nsv510794 21 32414308 32521043 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622801 S 4 0 1 "" NA18994 nsv507926 21 32416485 32422485 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620700,nssv621978 M 4 2 0 "" NA10860,NA15510 nsv3493 21 32428565 32473700 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5899 S 9 0 1 "" NA19129 nsv834084 21 32473892 32674799 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455597 S 95 1 0 "" nsv187213 21 32554278 32557989 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv205791 M 24 "" nsv510795 21 32566917 32676490 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619016 S 4 0 1 "" NA10860 nsv187437 21 32594878 32594878 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv206015 M 24 "" nsv834085 21 32616929 32813288 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455598 S 95 1 0 "" nsv518458 21 32687431 32696655 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695895 S 2026 0 1 "" nsv3494 21 32695937 32730494 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3074 S 9 1 0 "" NA18555 nsv187413 21 32766834 32774482 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv205991 M 24 "" nsv187110 21 32771918 32771998 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv205688 M 24 "" nsv187017 21 32777182 32777182 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv205595 M 24 "" nsv3495 21 32817350 32862406 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7716 S 9 0 1 "" NA12156 nsv438321 21 32879705 32880218 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470800 S 269 0 1 Samples from several populations that are part of the HapMap project. "" NA18945 nsv834086 21 33004630 33177704 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455599,nssv1455600 M 95 0 2 "" nsv509793 21 33067866 33142884 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621136 S 4 1 0 "" NA15510 nsv3496 21 33125650 33131721 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1623 S 9 1 0 "" NA19240 nsv520925 21 33315815 33327805 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv687408,nssv682329,nssv677737 M 2026 0 3 "" nsv509794 21 33592333 33618334 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619858,nssv623835 M 4 2 0 "" NA10860,NA18994 nsv834087 21 33620065 33763179 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455601 S 95 1 0 "" nsv528264 21 33731877 33759656 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704832 S 2026 1 0 "" nsv3497 21 33743225 33782482 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10311,nssv11044,nssv4554,nssv9604,nssv1624,nssv6955,nssv5900,nssv2346 M 9 8 0 "" NA12156,NA12878,NA15510,NA18507,NA18555,NA18956,NA19129,NA19240 nsv524420 21 33749710 33786154 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700346 S 2026 0 1 "" nsv509795 21 33751453 33815251 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619859,nssv618141,nssv621137,nssv623836 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv191 21 33766723 33782482 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv191 S 1 1 0 "" NA15510 nsv522214 21 34153401 34154830 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694990 S 2026 0 1 "" nsv438322 21 34190206 34191637 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470801,nssv470802 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA10851,NA12763 nsv438323 21 34402201 34403293 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470803 S 269 0 1 Samples from several populations that are part of the HapMap project. "" NA19098 nsv3499 21 34415848 34461141 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7717 S 9 0 1 "" NA12156 nsv3500 21 34521720 34554366 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10312 S 9 1 0 "" NA18956 nsv834088 21 34535591 34673945 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455602 S 95 0 1 "" nsv509796 21 34554780 34656639 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623837 S 4 1 0 "" NA18994 nsv510796 21 34554780 34656639 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619017 S 4 0 1 "" NA10860 nsv520827 21 34660028 34663726 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv676036,nssv680587,nssv680113 M 2026 0 3 "" nsv521323 21 34678699 34809229 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697930 S 2026 1 0 "" nsv523533 21 34854489 34863639 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699308 S 2026 0 1 "" nsv518782 21 34861283 34863428 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696236 S 2026 1 0 "" nsv817929 21 34863428 34863797 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417799 S 112 1 0 "" NA12264 nsv7345 21 34907213 34938303 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9368 S 9 0 0 "" NA18517 nsv3501 21 34937658 34968390 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2347 S 9 1 0 "" NA18555 nsv459243 21 35045555 35079568 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536044 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00773 nsv525427 21 35197309 35202246 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701552 S 2026 0 1 "" nsv523592 21 35285430 35285972 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699383 S 2026 0 1 "" nsv834089 21 35361415 35527719 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455603 S 95 1 0 "" nsv524285 21 35652341 35663806 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700184 S 2026 1 0 "" nsv525295 21 35775387 35832534 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701401 S 2026 0 1 "" nsv526395 21 35786327 35818066 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702694 S 2026 0 1 "" nsv3502 21 35796771 35830203 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7718 S 9 1 0 "" NA12156 nsv3503 21 35827720 35854952 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7719 S 9 0 1 "" NA12156 nsv471788 21 35936810 35937151 CNV Loss Hinds et al 2006 16327809 Oligo_aCGH,PCR Custom Perlegen arrays nssv646069 M 3.159 95 "" dgv107n6 21 35936834 35937039 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv187011,nsv187075 M 24 "" nsv527146 21 35938533 35979143 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703535 S 2026 1 0 "" nsv522199 21 35962518 36022910 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694972 S 2026 1 0 "" nsv459245 21 35969990 35995307 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536045 S 1557 0 1 "" NINDS_88 nsv459246 21 36029316 36121404 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536046 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01353 nsv459247 21 36297513 36382034 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536047 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01029 nsv3504 21 36302129 36335057 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5903 S 9 1 0 "" NA19129 esv2751927 21 36355635 36580379 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6984021,essv6987477,essv6987478,essv6984022,essv6984023 M 771 1 0 "" BEC_745 esv2751928 21 36398229 36544785 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6988963,essv6985935,essv6985934,essv6985933,essv6985932 M 771 1 0 "" SPC_86 esv33643 21 36406113 36406558 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98605 S 51 0 1 "" 22085 esv33578 21 36410182 36741497 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98757,essv99815 M 51 0 2 "" 21606,22086 nsv459249 21 36412525 36525523 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536048 S 1557 1 0 "" 1780862261_A nsv516175 21 36420225 36539500 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv662382,nssv691047,nssv684079,nssv683841,nssv673570,nssv666629 M 2026 6 0 "" nsv510797 21 36514347 36608993 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620167 S 4 0 1 "" NA15510 nsv3505 21 36661247 36669941 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7720 S 9 0 1 "" NA12156 nsv834090 21 36734415 36931412 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455605,nssv1455604 M 95 0 2 "" esv33286 21 36748886 36783426 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97533,essv99895 M 51 1 1 "" 21616,22086 nsv3506 21 36790033 36823866 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5904 S 9 1 0 "" NA19129 nsv519597 21 37029729 37043407 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv671528,nssv663734,nssv657005 M 2026 0 3 "" nsv3507 21 37069002 37086441 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1625 S 9 0 1 "" NA19240 esv2751929 21 37092300 37354491 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6981331,essv6981330,essv6985548,essv6985549,essv6981332 M 771 1 0 "" BEC_386 nsv510504 21 37145280 37151280 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618462 S 4 0 1 "" CHM nsv3508 21 37161392 37195097 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7721 S 9 1 0 "" NA12156 nsv510505 21 37340680 37346680 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618463 S 4 0 1 "" CHM nsv3510 21 37348604 37380256 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6956 S 9 1 0 "" NA12156 nsv3511 21 37417367 37432824 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7722 S 9 1 0 "" NA12156 dgv70n68 21 37429580 37632524 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH nsv834095,nsv834094 M 95 3 0 "" nsv3512 21 37464335 37509623 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7723 S 9 0 1 "" NA12156 nsv516817 21 37614244 37630751 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv690258,nssv686226,nssv660355,nssv681486,nssv671153,nssv696307,nssv662232,nssv675567,nssv702786,nssv688811,nssv671670 M 2026 1 10 "" nsv528244 21 37624055 37632901 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704806 S 2026 0 1 "" nsv520184 21 37630751 37632901 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697268 S 2026 0 1 "" nsv834096 21 37722651 37903861 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455609 S 95 0 1 "" nsv528055 21 37888392 37889900 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704589 S 2026 0 1 "" nsv187226 21 38118120 38118120 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv205804 M 24 "" nsv3513 21 38240241 38245438 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6957 S 9 1 0 "" NA12156 nsv523343 21 38247104 38248101 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699092 S 2026 0 1 "" nsv834097 21 38405131 38499045 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455610 S 95 1 0 "" nsv3514 21 38543136 38574473 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5905 S 9 1 0 "" NA19129 esv33823 21 38573989 38576625 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv94567 S 51 0 1 "" 21932 nsv834098 21 38613768 38767124 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455611 S 95 1 0 "" nsv3515 21 38672715 38702143 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4555 S 9 1 0 "" NA12878 nsv187113 21 38785760 38785864 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv205691 M 24 "" nsv817930 21 38835017 38838626 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417080,nssv1417079 M 112 0 2 "" NA07000,NA07029 esv2751930 21 38839050 38877931 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6980678,essv6980679,essv6987832 M 771 0 1 "" BEC_104 nsv3516 21 38850410 38858083 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7725 S 9 0 1 "" NA12156 nsv187128 21 38879353 38881154 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv205706 M 24 "" nsv3517 21 39014435 39046153 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5906 S 9 1 0 "" NA19129 dgv534n27 21 39037914 39078994 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv459256,nsv459258,nsv459257,nsv459254,nsv459255 M 1557 5 0 "" HGDP00197,HGDP00206,HGDP00232,HGDP00445,HGDP00582 nsv516348 21 39037914 39083251 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv667728,nssv687007 M 2026 2 0 "" nsv3518 21 39103330 39137496 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3075 S 9 1 0 "" NA18555 nsv3519 21 39287850 39304359 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3076 S 9 1 0 "" NA18555 nsv3522 21 39416468 39424440 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4556 S 9 1 0 "" NA12878 nsv523900 21 39427896 39431059 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699743 S 2026 0 1 "" nsv187394 21 39430004 39430085 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv205972 M 24 "" nsv442497 21 39656792 39658882 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv1373e1 21 39779393 39888026 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv18488,esv1084 M 271 0 0 "" NA12156 esv34779 21 39806741 39899343 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6990276,essv6978725,essv6978726,essv6978727,essv6978728 M 771 1 0 "" NA12156 nsv433457 21 39822218 39886423 CNV Gain Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463338 S 9 1 0 Samples from several populations that are part of the HapMap project. "" NA12156 nsv9863 21 39873097 39875630 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27059 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA12155 nsv834099 21 39998743 40127900 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455612 S 95 0 1 "" nsv3523 21 40181579 40215774 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7726 S 9 1 0 "" NA12156 nsv3524 21 40243021 40277082 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1626,nssv4557 M 9 2 0 "" NA12878,NA19240 nsv509797 21 40261373 40278021 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619860,nssv621138 M 4 2 0 "" NA10860,NA15510 nsv187309 21 40268293 40268293 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv205887 M 24 "" nsv187425 21 40268352 40268352 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv206003 M 24 "" nsv187161 21 40268485 40268573 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv205739 M 24 "" nsv7346 21 40283354 40370154 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10313,nssv1627,nssv4558,nssv9369 M 9 0 0 "" NA12878,NA18517,NA18956,NA19240 nsv523501 21 40389696 40401568 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699270 S 2026 1 0 "" nsv3525 21 40458284 40491292 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4559 S 9 1 0 "" NA12878 nsv519745 21 40497028 40500245 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697027 S 2026 0 1 "" esv33309 21 40498322 40498993 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv94227 S 51 1 0 "" 22394 nsv510506 21 40554290 40560290 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621508 S 4 0 1 "" NA15510 nsv834100 21 40647059 40865029 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455613,nssv1455614 M 95 2 0 "" nsv528658 21 40665509 40682287 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705292 S 2026 0 1 "" nsv520586 21 40666871 40677279 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv672846,nssv684507 M 2026 0 2 "" nsv187207 21 40734314 40734558 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv205785 M 24 "" nsv187221 21 40799257 40805787 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv205799 M 24 "" nsv187130 21 40822719 40830197 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv205708 M 24 "" nsv187086 21 40879132 40879250 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv205664 M 24 "" nsv187104 21 40931201 40931448 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv205682 M 24 "" nsv3526 21 41040051 41084271 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2348 S 9 0 1 "" NA18555 nsv3527 21 41081522 41115980 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3077 S 9 1 0 "" NA18555 nsv834101 21 41110820 41272864 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455615 S 95 1 0 "" nsv187138 21 41263760 41263814 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv205716 M 24 "" nsv7347 21 41266670 41474352 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6958 S 9 0 0 "" NA12156 dgv108n6 21 41324753 41325087 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv187026,nsv187093 M 24 "" nsv519019 21 41489778 41494214 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696490 S 2026 0 1 "" nsv3528 21 41530306 41564847 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4560 S 9 1 0 "" NA12878 nsv187046 21 41568947 41572987 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv205624 M 24 "" nsv522968 21 41579057 41579418 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698638 S 2026 0 1 "" nsv834102 21 41580064 41787803 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455616 S 95 0 1 "" nsv528279 21 41651707 41674208 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704849 S 2026 1 0 "" nsv187364 21 41672132 41672132 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv205942 M 24 "" nsv459261 21 41752560 41787977 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536054 S 1557 0 1 "" NINDS_57 nsv3529 21 41908795 41940055 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4561 S 9 1 0 "" NA12878 nsv520016 21 41962371 41965270 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv687776,nssv660093 M 2026 0 2 "" nsv187264 21 41966039 41966039 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv205842 M 24 "" nsv459264 21 41980692 42009458 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536056 S 1557 0 1 "" 1780854235_A nsv528841 21 42017409 42021326 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705518 S 2026 0 1 "" nsv459265 21 42026153 42053952 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536057 S 1557 0 1 "" 1780862565_A nsv7348 21 42061144 42083169 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5907 S 9 0 0 "" NA19129 nsv510507 21 42078806 42084806 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624256 S 4 0 1 "" NA18994 nsv187187 21 42129195 42129195 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv205765 M 24 "" nsv522791 21 42149852 42155505 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698435 S 2026 1 0 "" nsv528517 21 42158495 42158899 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705126 S 2026 0 1 "" nsv459271 21 42180398 42201140 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536058 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00210 nsv817931 21 42186752 42191092 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417555 S 112 0 1 "" NA18971 nsv3530 21 42195248 42243770 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv11045 S 9 0 1 "" NA15510 nsv525313 21 42403740 42407904 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701421 S 2026 0 1 "" nsv528679 21 42407751 42407904 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705319 S 2026 0 1 "" nsv510798 21 42428302 42462879 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620168 S 4 0 1 "" NA15510 nsv3531 21 42544504 42590258 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5908 S 9 0 1 "" NA19129 nsv510799 21 42548201 42617704 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620169 S 4 0 1 "" NA15510 nsv527022 21 42550900 42552582 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703397 S 2026 0 1 "" nsv459273 21 42550900 42597422 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536059 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00187 dgv253n21 21 42619066 42622269 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv520293,nsv520513 M 2026 0 4 "" nsv522001 21 42714974 43121107 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694770 S 2026 1 0 "" nsv459275 21 42735109 42748803 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536061 S 1557 0 1 "" NINDS_254 nsv834103 21 42749790 42905817 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455617 S 95 1 0 "" nsv521904 21 42796066 42800012 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694676 S 2026 0 1 "" nsv3533 21 42856264 42896225 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6959 S 9 0 1 "" NA12156 nsv187256 21 42863167 42863273 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv205834 M 24 "" nsv187054 21 42880874 42881332 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv205632 M 24 "" nsv521182 21 42911317 42917111 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv693941,nssv683952 M 2026 0 2 "" nsv3534 21 42943253 42974629 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2349 S 9 1 0 "" NA18555 nsv525775 21 42970809 42972776 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701947 S 2026 0 1 "" nsv459276 21 43007512 43031474 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536062 S 1557 1 0 "" NINDS_127 nsv459277 21 43045971 43061181 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536063 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00521 nsv834105 21 43166898 43323398 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455618 S 95 0 1 "" nsv187067 21 43187581 43187581 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv205645 M 24 "" nsv459278 21 43322410 43356841 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536064 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01240 nsv510800 21 43324272 43386979 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620170 S 4 0 1 "" NA15510 nsv521438 21 43351566 43356841 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698048 S 2026 0 1 "" nsv526609 21 43356841 43360473 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702929 S 2026 0 1 "" nsv459279 21 43381089 43442222 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536065 S 1557 0 1 "" NINDS_210 nsv509798 21 43446032 43493045 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623838,nssv621140,nssv618142,nssv619861 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv3535 21 43451783 43478794 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6960 S 9 1 0 "" NA12156 nsv3536 21 43543752 43577778 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4562 S 9 1 0 "" NA12878 esv32887 21 43645653 43663556 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100680,essv97250,essv98563,essv93256 M 51 4 0 "" 21656,22075,22085,22170 dgv535n27 21 43646295 43664110 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv459280,nsv459281,nsv459282 M 1557 3 0 "" 1780854486_A,HGDP00610,NINDS_211 nsv817932 21 43647907 43656409 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416285 S 112 1 0 "" NA12057 nsv817933 21 43647907 43664110 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415714,nssv1415715 M 112 2 0 "" NA10835,NA12249 nsv516339 21 43647907 43697488 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv681443,nssv671495,nssv671611,nssv660515,nssv673127,nssv661042,nssv700339,nssv699356,nssv703319,nssv689513,nssv667686,nssv701259 M 2026 6 6 "" nsv442498 21 43652457 43655716 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv459288 21 43659936 43694578 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536070 S 1557 0 1 "" 1780862093_A nsv521700 21 43749762 43866218 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698323 S 2026 0 1 "" nsv459289 21 43749762 43889028 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536071 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01270 nsv3537 21 43791768 43837532 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2351 S 9 0 1 "" NA18555 nsv442789 21 43794765 43797240 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv834106 21 43816815 43933917 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455620,nssv1455619 M 95 0 2 "" dgv109n6 21 43827124 43827623 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv187278,nsv187117 M 24 "" nsv187429 21 43840069 43842698 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv206007 M 24 "" nsv509799 21 43968318 44097155 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619862 S 4 1 0 "" NA10860 esv33771 21 43979648 43991681 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101557,essv101218,essv93845,essv100783,essv96777,essv101072,essv95164,essv98259,essv94664,essv94088,essv101329,essv94387,essv96914,essv97917,essv95631,essv95451,essv93011,essv95294,essv97320,essv101759,essv95889,essv94551,essv99109,essv92993,essv92792,essv93597,essv96141,essv96695,essv98642,essv96026,essv93350,essv99724,essv94980,essv92586,essv96491,essv99335,essv97640,essv100139,essv100515,essv100355,essv99493,essv98462,essv96267 M 51 43 0 "" 21603,21618,21634,21656,21659,21693,21721,21772,21791,21802,21805,21808,21817,21837,21841,21847,21863,21872,21879,21909,21911,21932,21938,21939,21944,21972,22007,22011,22085,22127,22170,22217,22231,22233,22261,22275,22278,22286,22298,22300,22335,22352,22371 nsv834107 21 43979753 44118974 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455622,nssv1455621,nssv1455623 M 95 0 3 "" esv33817 21 43993840 44891970 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99474 S 51 0 1 "" 22335 nsv459291 21 44000386 44015567 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536072 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00607 nsv520305 21 44000386 44070754 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694374 S 2026 0 1 "" nsv834108 21 44002465 44194069 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455624,nssv1455625 M 95 0 2 "" nsv522204 21 44044911 44070754 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694977 S 2026 0 1 "" nsv516832 21 44061467 44064565 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv674509,nssv654291,nssv687939,nssv684402,nssv682521,nssv663079 M 2026 0 6 "" nsv519385 21 44061467 44088348 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696825 S 2026 0 1 "" nsv442499 21 44062480 44064568 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv517946 21 44080264 44088348 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695358 S 2026 0 1 "" nsv3538 21 44092102 44121587 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7727 S 9 0 1 "" NA12156 nsv518543 21 44452404 44455036 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694247 S 2026 0 1 "" nsv517401 21 44453796 44455036 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv651910,nssv677153,nssv674414,nssv704511,nssv692944,nssv669358,nssv686184,nssv683748,nssv696069,nssv678171,nssv688999,nssv657994,nssv678811 M 2026 1 12 "" nsv526276 21 44492599 44495198 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702555 S 2026 0 1 "" nsv509800 21 44528359 44715882 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619863 S 4 1 0 "" NA10860 nsv526673 21 44535630 44547812 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703005 S 2026 0 1 "" nsv518709 21 44546870 44547812 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696160 S 2026 0 1 "" nsv3539 21 44623529 44638958 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5909 S 9 1 0 "" NA19129 nsv817934 21 44635771 44645957 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417556 S 112 0 1 "" NA18971 nsv519245 21 44657340 44673563 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694319 S 2026 0 1 "" nsv834109 21 44693780 44754475 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455628,nssv1455627,nssv1455626,nssv1455630,nssv1455629,nssv1455633,nssv1455631,nssv1455632 M 95 0 8 "" nsv187155 21 44712810 44712810 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv205733 M 24 "" nsv516004 21 44812854 44813639 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv657419,nssv655309,nssv665669 M 2026 0 3 "" esv2751931 21 44814874 44879100 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6983842,essv6983843,essv6989865 M 771 0 1 "" BEC_633 nsv524387 21 44942985 44944198 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700304 S 2026 0 1 "" nsv459298 21 45015875 45102396 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536074 S 1557 0 1 "" 1780862444_A nsv3540 21 45055295 45084879 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10314 S 9 1 0 "" NA18956 dgv536n27 21 45108097 45135692 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv459299,nsv459300 M 1557 2 0 "" HGDP00951,HGDP00968 nsv459301 21 45130589 45147281 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536077 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00676 nsv516593 21 45130589 45148159 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697627,nssv654344,nssv660454,nssv669454,nssv660868 M 2026 0 5 "" nsv817935 21 45135692 45148159 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417209 S 112 0 1 "" NA18558 nsv459302 21 45135692 45152263 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536078 S 1557 0 1 "" NINDS_98 nsv834110 21 45140611 45329579 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455634 S 95 0 1 "" nsv187072 21 45163279 45163279 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv205650 M 24 "" nsv187379 21 45215524 45215524 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv205957 M 24 "" nsv187345 21 45225859 45226198 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv205923 M 24 "" nsv526277 21 45233218 45264813 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702556 S 2026 0 1 "" nsv187035 21 45267604 45267656 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv205613 M 24 "" nsv3541 21 45320843 45361057 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5910 S 9 0 1 "" NA19129 nsv187318 21 45353060 45353123 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv205896 M 24 "" nsv522002 21 45367098 45376130 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694771 S 2026 1 0 "" nsv187447 21 45378600 45378600 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv206025 M 24 "" nsv187030 21 45396617 45396670 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv205608 M 24 "" nsv509802 21 45461939 45530719 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623839 S 4 1 0 "" NA18994 dgv537n27 21 45544438 45673017 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv459303,nsv459304 M 1557 2 0 "" HGDP00066,HGDP00137 nsv526243 21 45574146 45581128 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702514 S 2026 0 1 "" nsv520123 21 45574146 45655301 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697234 S 2026 1 0 "" nsv518554 21 45583931 45599446 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694248 S 2026 0 1 "" nsv442500 21 45599902 45603200 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv516407 21 45655301 45865084 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv652887,nssv678911,nssv695809,nssv690481,nssv672768,nssv683690,nssv669603,nssv660455,nssv670071,nssv676871 M 2026 0 10 "" nsv834111 21 45667514 45829672 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455635 S 95 0 1 "" dgv538n27 21 45693257 45743560 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv459305,nsv459306 M 1557 0 2 "" HGDP00433,HGDP00518 nsv459308 21 45739470 45761386 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536084 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00684 nsv834112 21 45746579 45872681 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455636 S 95 1 0 "" nsv187181 21 45751458 45751522 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv205759 M 24 "" nsv187444 21 45771993 45772091 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv206022 M 24 "" nsv3542 21 45784055 45817158 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2352 S 9 1 0 "" NA18555 nsv509803 21 46020679 46093957 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623840,nssv621141 M 4 2 0 "" NA15510,NA18994 dgv1374e1 21 46067460 46144196 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv928,essv9536 M 271 0 0 "" NA18861 nsv510508 21 46108350 46114350 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621509 S 4 0 1 "" NA15510 nsv509804 21 46123941 46479482 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623841,nssv619864,nssv619865,nssv619866,nssv619867 M 4 2 0 "" NA10860,NA18994 nsv187323 21 46146571 46146630 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv205901 M 24 "" dgv254n21 21 46243440 46248774 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv524388,nsv521579 M 2026 0 2 "" nsv3544 21 46270384 46291274 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4563 S 9 1 0 "" NA12878 nsv519834 21 46297069 46327739 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703983,nssv658979,nssv678758 M 2026 1 2 "" nsv525728 21 46297069 46407934 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701892 S 2026 0 1 "" nsv187142 21 46355929 46356052 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv205720 M 24 "" nsv459311 21 46360974 46374041 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536085 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00512 nsv187077 21 46364478 46364478 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv205655 M 24 "" dgv255n21 21 46367207 46399800 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv517870,nsv527953 M 2026 2 0 "" nsv519904 21 46407934 46705737 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694353 S 2026 0 1 "" nsv3545 21 46412693 46424742 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4564 S 9 1 0 "" NA12878 nsv187209 21 46414593 46414671 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv205787 M 24 "" nsv3546 21 46442701 46473658 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5911 S 9 1 0 "" NA19129 nsv527355 21 46503202 46687453 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703784 S 2026 1 0 "" nsv3547 21 46528129 46565858 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4565,nssv6961,nssv5912 M 9 3 0 "" NA12156,NA12878,NA19129 nsv187224 21 46542789 46543385 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv205802 M 24 "" nsv433176 21 46626358 46628866 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463057 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA18555 nsv515801 21 46660550 46687453 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv687090,nssv655007,nssv661043,nssv667529,nssv661542,nssv669604,nssv666195,nssv697235,nssv674689,nssv663425,nssv664825,nssv674637,nssv678574,nssv665651,nssv660441,nssv665273,nssv666925,nssv657692,nssv685894 M 2026 0 19 "" nsv459312 21 46680534 46810083 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536086 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01156 nsv3548 21 46781683 46789014 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6962 S 9 1 0 "" NA12156 nsv459313 21 46788687 46807080 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536087 S 1557 0 1 "" 1780854483_A nsv523038 21 46804998 46810083 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698721 S 2026 0 1 "" nsv526768 21 46810429 46811975 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703120 S 2026 0 1 "" nsv528947 21 46810511 46874816 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705639 S 2026 1 0 "" dgv1375e1 21 46811098 46902240 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv7487,esv1322 M 271 0 0 "" NA18561 esv34393 21 46840100 46902240 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6979467,essv6979466,essv6990368,essv6986875,essv6979468 M 771 1 0 "" NA18561 nsv527542 21 46840297 46852308 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704003 S 2026 0 1 "" nsv528495 21 46840297 46877266 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705100 S 2026 0 1 "" nsv9864 21 46880148 46883057 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24345,nssv27781,nssv25641 M 31 3 0 Samples from several populations that are part of the HapMap project. "" NA18563,NA18942,NA18972 nsv9865 21 46892366 46896763 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28690 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19221 nsv9866 22 14432999 14842933 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25685,nssv26652,nssv26223,nssv27890,nssv27261,nssv25830,nssv27647,nssv27870,nssv22541,nssv25809,nssv25034,nssv22115,nssv27877,nssv25377,nssv25839,nssv28065,nssv28062,nssv25738,nssv26075,nssv25663,nssv27884,nssv25860,nssv25025,nssv24781,nssv27069,nssv28721,nssv26286,nssv25352,nssv25324,nssv26242,nssv27079,nssv25787,nssv27238,nssv27788,nssv27655,nssv25050 M 31 3 21 Samples from several populations that are part of the HapMap project. "" NA07048,NA10847,NA10863,NA11830,NA12155,NA12740,NA12872,NA18502,NA18504,NA18537,NA18552,NA18563,NA18564,NA18853,NA18860,NA18972,NA18975,NA18980,NA19007,NA19132,NA19144,NA19173,NA19221,NA19240 dgv172e55 22 14433758 15674874 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv2751932,esv2751933,esv2751934 M 771 3 0 "" BEC_158,BEC_330,SPC_181 dgv71n68 22 14453375 14660949 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH nsv834114,nsv834113 M 95 26 0 "" nsv469815 22 14459179 14636895 CNV Gain Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649836 M 265 9 0 Samples from several populations that are part of the HapMap project. "" nsv471709 22 14459180 14636895 CNV Gain+Loss Sharp et al 2005 15918152 BAC_aCGH,FISH Eichler Segmental Duplication BAC array nssv550698,nssv550690,nssv550699,nssv550691,nssv550697,nssv550703,nssv550702,nssv550692,nssv550693,nssv550701,nssv550696,nssv550694,nssv550700,nssv550704,nssv550695 M 48 7 8 "" JK1051,NA10469,NA10493,NA10495,NA10496,NA10967,NA10969,NA10970,NA10971,NA15729,NA15732,NA15733,NA17014,NA17052,P86GA dgv1376e1 22 14461115 15652016 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv7872,esv830,essv16175,essv23917,essv5494,essv14804,essv19803,essv23271 M 271 0 0 "" NA07345,NA12814,NA12864,NA18506,NA18632,NA18870,NA19140 nsv821691 22 14491957 14623461 CNV Loss Sebat_et_al_2004 15273396 ROMA Custom Nimblegen photoprint 85000 probe ROMA oligo array nssv1421329 S 31 0 1 "" esv33426 22 14504247 14878881 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98197,essv101337,essv96353 M 51 2 1 "" 21772,21805,22371 dgv1377e1 22 14509865 14563401 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv14395,essv117,essv645,essv24663,essv21328,essv17538,essv23537,essv304,essv16978,essv18237,essv24465,essv20252,essv3066,essv11815,essv18097,essv1784,essv10763,essv23851,essv537,essv24263,essv4294,essv2503,essv22153,essv6190,essv8774,essv19753,essv4891,essv3214,essv15226,essv22559,essv22961,essv23200,essv7738,essv9642,essv5826,essv7532,essv18659,essv7222,essv24077,essv19667,essv21830,essv12277,essv13565,essv22823,essv4467,essv21068,essv13710,essv20327,essv9205,essv14644,essv6634,essv15087,essv20770,essv19517,essv5191,essv5114,essv14173,essv23664,essv10329,essv16722,essv16264,essv1527,essv13750,essv5018,essv9883,essv5739,essv15575,essv20632,essv21404,essv18315,essv13641,essv16859,essv4712,essv1008,essv14286,essv11660,essv10200,essv12615,essv16484,essv20050,essv4026,essv24843,essv5229,essv19446,essv6227,essv20965,essv18857,essv17656,essv23980,essv13919,essv22519,essv7692,essv17289,essv11555,essv8358,essv24564,essv19966,essv13006,essv15667,essv9143,essv14067,essv9015,essv19105,essv7860,essv15341,essv5597,essv17057,essv12375,essv17114,essv9817,essv14978,essv4363,essv14430,essv2181,essv24425,essv21993,essv21169,essv17826,essv9723,essv13445,essv12731,essv2328,essv17617,essv17943,essv18717,essv2482,essv6353,essv12500,essv14701,essv3719,essv7394,essv20201,essv2068,essv11119,essv1216,essv15764,essv474,essv19018,essv20614,essv11922,essv3760,essv1116,essv17454,essv17273,essv2298,essv11739,essv2671,essv20151,essv8813,essv12787,essv23410,essv22219,essv3274 M 271 0 0 "" NA06991,NA06993,NA07000,NA07022,NA07048,NA07055,NA07056,NA07345,NA07348,NA07357,NA10831,NA10835,NA10846,NA10854,NA10856,NA10857,NA10859,NA10863,NA11829,NA11830,NA11832,NA11839,NA11840,NA11881,NA11882,NA11992,NA11995,NA12003,NA12004,NA12005,NA12043,NA12044,NA12056,NA12057,NA12144,NA12145,NA12146,NA12156,NA12234,NA12236,NA12264,NA12707,NA12716,NA12740,NA12751,NA12753,NA12762,NA12801,NA12813,NA12864,NA12874,NA12878,NA12892,NA18500,NA18502,NA18503,NA18504,NA18506,NA18507,NA18508,NA18521,NA18523,NA18529,NA18532,NA18542,NA18545,NA18547,NA18552,NA18558,NA18561,NA18566,NA18573,NA18576,NA18577,NA18593,NA18603,NA18609,NA18611,NA18621,NA18622,NA18623,NA18624,NA18633,NA18635,NA18636,NA18854,NA18856,NA18858,NA18859,NA18860,NA18861,NA18862,NA18863,NA18870,NA18912,NA18913,NA18914,NA18940,NA18947,NA18949,NA18951,NA18952,NA18960,NA18961,NA18964,NA18966,NA18967,NA18968,NA18972,NA18974,NA18975,NA18978,NA18980,NA18981,NA18997,NA18998,NA18999,NA19003,NA19005,NA19092,NA19093,NA19094,NA19101,NA19119,NA19120,NA19127,NA19128,NA19129,NA19131,NA19132,NA19137,NA19140,NA19141,NA19142,NA19144,NA19145,NA19152,NA19153,NA19154,NA19159,NA19160,NA19161,NA19171,NA19172,NA19173,NA19192,NA19194,NA19201,NA19205,NA19207,NA19210,NA19211,NA19238 dgv1378e1 22 14526517 14563401 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1352,essv19598 M 271 0 0 "" NA12155,NA19007 nsv511070 22 14673745 15053638 OTHER Inversion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622435 S 4 0 0 "" NA10860 nsv3549 22 14738888 14754273 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2353 S 9 0 1 "" NA18555 nsv834116 22 14741979 14947223 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455664,nssv1455663,nssv1455672,nssv1455668,nssv1455667,nssv1455666,nssv1455665,nssv1455670,nssv1455671,nssv1455669,nssv1455673,nssv1455677,nssv1455676,nssv1455675,nssv1455674 M 95 15 0 "" nsv469638 22 14753781 14894463 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649564 M 265 18 2 Samples from several populations that are part of the HapMap project. "" nsv471593 22 14753782 14894463 CNV Gain+Loss Sharp et al 2005 15918152 BAC_aCGH,FISH Eichler Segmental Duplication BAC array nssv549738,nssv549736,nssv549737,nssv549735 M 48 1 3 "" NA10493,NA10971,NA15733,NA17014 nsv471422 22 14823380 14824358 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548238,nssv548236,nssv548237 M 3 "" nsv442501 22 14865530 15024539 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv3550 22 15250226 15293499 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7728 S 9 0 1 "" NA12156 dgv1379e1 22 15251689 15327532 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv7503,essv7461 M 271 0 0 "" NA18561,NA18633 essv18879 22 15252977 15431692 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA07029 dgv18e196 22 15269097 15551902 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array esv2422448,esv2422342,esv2422318 M 181 3 0 "" ND00706,ND01205,ND01583 nsv9867 22 15270179 15388598 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25881,nssv25059,nssv26260,nssv28722,nssv27896,nssv24806 M 31 2 4 Samples from several populations that are part of the HapMap project. "" NA07048,NA10863,NA11830,NA18502,NA18537,NA19221 nsv517059 22 15292889 15676397 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv692451,nssv678514,nssv689488,nssv682236,nssv693834,nssv661124,nssv666735,nssv656148,nssv699684,nssv684478,nssv671919,nssv690368,nssv688206,nssv653704,nssv701301,nssv702550,nssv703690,nssv670588 M 2026 16 2 "" nsv527637 22 15292889 15836739 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704106 S 2026 1 0 "" essv989 22 15327532 15431692 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18964 dgv539n27 22 15407252 15527165 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv459317,nsv459319,nsv459315,nsv459316 M 1557 4 0 "" HGDP00607,HGDP00618,HGDP00631,HGDP00653 dgv540n27 22 15407252 15668805 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv459320,nsv459323,nsv459324,nsv459325,nsv459322,nsv459321 M 1557 6 0 "" 1780862579_A,HGDP00587,NINDS_35,NINDS_39,NINDS_65,NINDS_66 esv32715 22 15563701 15570473 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv94003,essv97921,essv95363,essv93403,essv96571,essv97733 M 51 6 0 "" 21802,21837,21872,22170,22261,22278 nsv3551 22 15600021 15605236 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10315 S 9 1 0 "" NA18956 nsv9869 22 15610601 15615984 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26094 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA12740 nsv459333 22 15641560 15663672 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536100 S 1557 0 1 "" NINDS_178 nsv834117 22 15651735 15804286 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455678 S 95 1 0 "" nsv510509 22 15717457 15723457 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618464 S 4 0 1 "" CHM nsv9870 22 15724940 15765002 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22660 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA12802 nsv516349 22 15773765 15779727 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv690158,nssv691386,nssv685049,nssv667729 M 2026 0 4 "" nsv515942 22 15801591 15803988 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv654406,nssv688555,nssv670072,nssv687640,nssv665395,nssv657079,nssv674638,nssv682495,nssv685779,nssv671646 M 2026 10 0 "" nsv509805 22 15936861 16123129 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621142 S 4 1 0 "" NA15510 nsv521478 22 15942253 15950354 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698090 S 2026 0 1 "" nsv518600 22 15947495 15950354 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696046 S 2026 0 1 "" nsv519563 22 15959995 15963800 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv676115,nssv697900,nssv656896,nssv663006,nssv658434,nssv681001 M 2026 0 6 "" nsv526946 22 15992696 16008604 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703316 S 2026 0 1 "" nsv528777 22 16039967 16055073 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705442 S 2026 0 1 "" nsv191229 22 16040300 16040355 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv209807 M 24 "" nsv519933 22 16043860 16044810 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697134 S 2026 0 1 "" nsv191400 22 16057447 16064303 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv209978 M 24 "" nsv520588 22 16072335 16074838 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv681444,nssv672870 M 2026 0 2 "" nsv191371 22 16105271 16105584 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv209949 M 24 "" nsv510801 22 16123129 16164137 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617445 S 4 0 1 "" CHM nsv3552 22 16132289 16168546 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6963,nssv2354,nssv4566 M 9 0 3 "" NA12156,NA12878,NA18555 nsv459335 22 16189365 16289984 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536101 S 1557 1 0 "" NINDS_173 nsv834118 22 16214104 16377363 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455679 S 95 0 1 "" nsv526826 22 16265112 16693733 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703183 S 2026 1 0 "" nsv438324 22 16391062 16393158 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470806,nssv470804,nssv470809,nssv470805,nssv470808 M 269 0 5 Samples from several populations that are part of the HapMap project. "" NA18973,NA18991,NA18992,NA18994,NA19007 nsv9871 22 16399289 16540861 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27301 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18504 nsv510802 22 16404339 16462211 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619019 S 4 0 1 "" NA10860 nsv3553 22 16407855 16465416 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4567,nssv7730,nssv2355 M 9 0 3 "" NA12156,NA12878,NA18555 esv33220 22 16432552 16433263 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101509,essv101170,essv93965,essv95187,essv98208,essv94701,essv94344,essv97960,essv93160,essv97377,essv101714,essv99069,essv92976,essv92788,essv93718,essv96170,essv96065,essv93451,essv93374,essv99591,essv92639,essv99351,essv100228,essv100491,essv100318,essv98499,essv96412 M 51 0 27 "" 21603,21618,21634,21721,21772,21791,21808,21837,21863,21879,21909,21938,21939,21944,21972,22007,22127,22128,22170,22217,22233,22275,22286,22298,22300,22352,22371 nsv191259 22 16474087 16474396 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv209837 M 24 "" nsv834119 22 16522453 16653314 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455680 S 95 0 1 "" nsv524899 22 16536097 16538349 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700908 S 2026 0 1 "" nsv834120 22 16591210 16761758 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455683,nssv1455681,nssv1455682,nssv1455684 M 95 0 4 "" nsv518202 22 16632936 16637822 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695625 S 2026 0 1 "" nsv527393 22 16632936 16645333 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703828 S 2026 0 1 "" nsv191363 22 16635091 16635147 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv209941 M 24 "" nsv509806 22 16663530 16741069 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623842 S 4 1 0 "" NA18994 nsv3555 22 16716934 16750814 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5913,nssv4568 M 9 2 0 "" NA12878,NA19129 nsv3556 22 16771822 16805048 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5914 S 9 1 0 "" NA19129 nsv191257 22 16840731 16840784 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv209835 M 24 "" nsv834121 22 16848295 16934114 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455685 S 95 1 0 "" nsv524564 22 16924294 16937442 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700518 S 2026 0 1 "" dgv1380e1 22 16926349 17436267 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv827,essv22931,essv21270,essv1899,essv47,essv4146,essv22460,essv7619,essv1354,essv6702,essv11262,essv7126,essv8352,essv21846,essv13679,essv557,essv9032,essv24590,essv24865,essv485,essv4570,essv4433,essv5346,essv13650,essv10253,esv598,essv6181,essv4085,essv20856,essv15788,essv23050,essv17338,essv19946,essv21039,essv10300,essv9148,essv20178,essv24996,essv15151,essv6879,essv5566,essv19526,essv10830,essv16269,essv15649,essv17804,essv22334,essv17517,essv22375,essv12254,essv2201,essv8645,essv10592,essv317 M 271 0 0 "" NA06985,NA06991,NA07000,NA07357,NA10831,NA10839,NA10855,NA11829,NA11832,NA11839,NA11992,NA12761,NA12762,NA12812,NA12813,NA12864,NA12875,NA18506,NA18524,NA18529,NA18532,NA18537,NA18545,NA18555,NA18563,NA18573,NA18605,NA18608,NA18635,NA18856,NA18858,NA18860,NA18871,NA18912,NA18952,NA18960,NA18971,NA18973,NA18976,NA18991,NA18998,NA19007,NA19101,NA19119,NA19127,NA19129,NA19131,NA19132,NA19152,NA19161,NA19204,NA19239,NA19240 nsv469560 22 16933331 17071291 CNV Gain Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649672 M 265 36 0 Samples from several populations that are part of the HapMap project. "" nsv471594 22 16933332 17244196 CNV Gain+Loss Sharp et al 2005 15918152 BAC_aCGH,FISH Eichler Segmental Duplication BAC array nssv550948,nssv549277,nssv549259,nssv549263,nssv550959,nssv550962,nssv550960,nssv550954,nssv549254,nssv550942,nssv549266,nssv550947,nssv550952,nssv550953,nssv550970,nssv550946,nssv550945,nssv550972,nssv550956,nssv549253,nssv549276,nssv549257,nssv549281,nssv550966,nssv550949,nssv550968,nssv550965,nssv550967,nssv549279,nssv549262,nssv549284,nssv549265,nssv549283,nssv550957,nssv550963,nssv550973,nssv550964,nssv550944,nssv549280,nssv550943,nssv549261,nssv550955,nssv550941,nssv550971,nssv549275,nssv550950,nssv549258,nssv549271,nssv549272,nssv549260,nssv549256,nssv549267,nssv549273,nssv550951,nssv550958,nssv549269,nssv549274,nssv550969,nssv550961,nssv549278,nssv549270,nssv549252,nssv549255,nssv549268,nssv549282,nssv549264 M 48 3 35 "" JK776,NA10469,NA10471,NA10473,NA10492,NA10493,NA10494,NA10496,NA10967,NA10969,NA10970,NA10971,NA10976,NA10979,NA11323,NA11523,NA15724,NA15725,NA15726,NA15727,NA15728,NA15730,NA15731,NA15732,NA15733,NA16688,NA16689,NA17014,NA17015,NA17016,NA17017,NA17020,NA17051,NA17052,NA17058,NA17059,P86GA nsv9872 22 16951323 16952965 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25402 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18853 nsv9873 22 16993305 17001727 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28068,nssv27786 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA18517,NA18860 nsv442502 22 17000683 17003703 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv516997 22 17001191 17401167 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv685050,nssv687698,nssv679877,nssv660150,nssv653574,nssv685982,nssv659074,nssv656897,nssv668635,nssv682769,nssv656307,nssv691065,nssv687843,nssv676200,nssv665247,nssv684622,nssv662698,nssv657024,nssv689219,nssv672377,nssv656059,nssv674460,nssv672847,nssv685965,nssv678378,nssv691944,nssv687480,nssv670483,nssv671779,nssv652721,nssv662383,nssv683418,nssv690970,nssv676471,nssv684069,nssv662848,nssv689628,nssv660628,nssv683749,nssv667217,nssv678244,nssv667979,nssv689858,nssv673591,nssv687850,nssv689147,nssv693602,nssv683691,nssv666479,nssv657080,nssv702643,nssv675005,nssv656613,nssv652773 M 2026 33 21 "" esv2751935 22 17006930 17404890 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6985085,essv6985084,essv6990073 M 771 0 1 "" BEC_94 dgv173e55 22 17014854 17432344 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv2751936,esv34520,esv2751937 M 771 3 0 "" BEC_103,NA11829,SPC_31 esv32687 22 17016230 17385032 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv94433,essv95325,essv96168 M 51 2 1 "" 21808,21872,22007 nsv471339 22 17018001 17265089 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548013,nssv548012,nssv548010 M 3 "" nsv469578 22 17054527 17270304 CNV Gain Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649691 M 265 7 0 Samples from several populations that are part of the HapMap project. "" nsv510510 22 17058330 17064330 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622323 S 4 0 1 "" NA10860 nsv509807 22 17089483 17089483 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619868 S 4 1 0 "" NA10860 nsv469851 22 17102889 17244196 CNV Gain Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649872 M 265 68 0 Samples from several populations that are part of the HapMap project. "" esv2422290 22 17114186 17263012 CNV Deletion Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161385 S 181 0 1 "" ND01493 nsv509808 22 17115246 17115246 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623843 S 4 1 0 "" NA18994 dgv19e196 22 17137403 17229527 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array esv2422353,esv2422307 M 181 2 0 "" ND00714,ND01938 nsv7349 22 17143863 19957391 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5917,nssv4572,nssv9605,nssv5920,nssv9370,nssv4571,nssv1632,nssv6966,nssv5915,nssv5916,nssv6965 M 9 0 0 "" NA12156,NA12878,NA18507,NA18517,NA19129,NA19240 nsv442503 22 17184664 17380678 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" essv17726 22 17207674 17306230 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12872 dgv1381e1 22 17207674 17366764 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv24700,essv24262,essv20076 M 271 0 0 "" NA07048,NA10856,NA11829 dgv1382e1 22 17207674 17436267 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv18455,essv7281,essv3806,essv23617 M 271 0 0 "" NA11831,NA12006,NA18592,NA18943 nsv459336 22 17252341 17341925 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536102 S 1557 0 1 "" 1780862355_A dgv541n27 22 17252341 17356651 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv459338,nsv459337 M 1557 2 0 "" 1782681093_A,HGDP00632 dgv542n27 22 17252341 17382662 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv459395,nsv459386,nsv459358,nsv459394 M 1557 0 4 "" 1780862125_A,1780862573_A,HGDP01418,NINDS_242 dgv543n27 22 17252341 17408086 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv459391,nsv459379,nsv459370,nsv459357,nsv459376,nsv459383,nsv459393,nsv459364,nsv459356,nsv459367,nsv459378,nsv459377,nsv459373,nsv459360,nsv459387,nsv459361,nsv459362,nsv459369,nsv459381,nsv459365,nsv459390,nsv459375,nsv459388,nsv459389,nsv459384,nsv459380,nsv459359,nsv459371,nsv459372,nsv459382,nsv459366,nsv459368 M 1557 32 0 "" 1780846004_A,1780854196_A,1780854255_A,1780854327_A,1780854430_A,1780862002_A,1780862021_A,1780862195_A,1780862224_A,1780862274_A,1798860010_A,1798860251_A,HGDP00021,HGDP00025,HGDP00136,HGDP00228,HGDP00351,HGDP00524,HGDP00557,HGDP00582,HGDP00737,HGDP01050,HGDP01268,HGDP01310,HGDP01379,HGDP01399,NINDS_197,NINDS_54,NINDS_56,NINDS_57,NINDS_58,NINDS_98 dgv174e55 22 17265500 17412089 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv34431,esv34826,esv2751938,esv2751939 M 771 4 0 "" BEC_41,BEC_584,NA10856,NA12006 dgv1383e1 22 17265521 17411293 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv25121,essv23300 M 271 0 0 "" NA10856,NA12006 dgv1384e1 22 17363351 17407078 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv8852,essv18192,essv650,essv17904,essv2649,essv2782,essv166,essv22067,essv7387,essv14639,essv15843,essv5934,essv15404,essv8772,essv16936,essv4915,essv2604,essv1725,essv23335,essv1623,essv22202,essv6223,essv24048,essv19261,essv22526,essv4670,essv17437,essv5743,essv1427,essv2523,essv22756,essv770,essv23390 M 271 0 0 "" NA07019,NA10838,NA10854,NA10859,NA11882,NA12003,NA12043,NA12044,NA12057,NA12154,NA12750,NA18508,NA18550,NA18561,NA18593,NA18622,NA18623,NA18636,NA18942,NA18944,NA18956,NA18967,NA18968,NA18975,NA18987,NA18990,NA18997,NA19003,NA19092,NA19093,NA19144,NA19203,NA19223 dgv1385e1 22 17363351 17436267 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv16911,essv3382,essv24913,essv15234,essv11688,essv4184,essv23916,essv21176,essv18355,essv3276,essv12701,essv2307,essv218,essv2001,essv3475 M 271 0 0 "" NA06994,NA11830,NA11994,NA12814,NA18526,NA18914,NA18940,NA18945,NA18948,NA18949,NA18972,NA18992,NA19094,NA19154,NA19205 dgv1386e1 22 17391395 17436267 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv21071,essv24653,essv22475,essv23003,essv22812,essv17493 M 271 0 0 "" NA06991,NA11829,NA12004,NA12761,NA12762,NA12812 nsv834122 22 17460558 17642266 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455686 S 95 0 1 "" nsv191518 22 17498307 17498385 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv210096 M 24 "" nsv191354 22 17498387 17498465 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv209932 M 24 "" nsv817936 22 17530176 17532670 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417312 S 112 0 1 "" NA18608 nsv459398 22 17558341 17601829 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536145 S 1557 0 1 "" 1780854489_A nsv834123 22 17564238 17732867 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455687 S 95 0 1 "" nsv834124 22 17625393 17813374 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455688 S 95 0 1 "" nsv834125 22 17650802 17771680 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455689 S 95 0 1 "" nsv191368 22 17653902 17653902 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv209946 M 24 "" nsv3557 22 17703575 17736023 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1629 S 9 1 0 "" NA19240 nsv834127 22 17776641 18018534 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455690 S 95 0 1 "" esv2751940 22 17797804 18141336 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6986111,essv6986110,essv6982227,essv6982226,essv6982225 M 771 1 0 "" BEC_404 nsv3558 22 17830145 17871304 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1630,nssv4569 M 9 2 0 "" NA12878,NA19240 nsv191230 22 17946173 17947655 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv209808 M 24 "" nsv834128 22 17996704 18166052 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455691 S 95 0 1 "" nsv516187 22 18010905 18012598 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv663625,nssv668455,nssv674853,nssv674608,nssv666676,nssv654674 M 2026 3 3 "" nsv528700 22 18010905 18017799 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705346 S 2026 1 0 "" nsv191583 22 18059086 18059145 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv210161 M 24 "" nsv517478 22 18066056 18179817 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698711,nssv696576,nssv673715,nssv684260,nssv695810,nssv684533,nssv699358,nssv690216,nssv692689,nssv673089,nssv672055,nssv693437,nssv673347,nssv687109,nssv678099,nssv676520,nssv692429,nssv652139,nssv673090 M 2026 0 19 "" nsv834129 22 18067694 18281145 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455692,nssv1455693 M 95 0 2 "" nsv438325 22 18146733 18170140 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470814,nssv470812,nssv470811,nssv470813,nssv470810 M 269 0 5 Samples from several populations that are part of the HapMap project. "" NA18942,NA18973,NA18992,NA18994,NA19007 nsv834130 22 18200000 18302644 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455695,nssv1455694 M 95 0 2 "" nsv515664 22 18235429 18254191 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv659224,nssv665904,nssv670616,nssv664289,nssv690269 M 2026 0 5 "" nsv469641 22 18253739 18429812 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649568 M 265 0 31 Samples from several populations that are part of the HapMap project. "" dgv72n68 22 18253740 18444524 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH nsv834131,nsv834132 M 95 0 8 "" nsv3559 22 18262120 18290595 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9868 S 9 1 0 "" NA18507 nsv517165 22 18324982 18361756 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv657052,nssv673716,nssv663579,nssv653904,nssv677816,nssv655037 M 2026 0 6 "" nsv3560 22 18366708 18400823 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7731 S 9 1 0 "" NA12156 nsv834133 22 18391440 18538785 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455705,nssv1455704 M 95 0 2 "" dgv1387e1 22 18401047 18684001 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv13203,esv98,essv14124 M 271 0 0 "" NA18861,NA19102 nsv521042 22 18404432 18446291 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv680652,nssv685168,nssv688812 M 2026 0 3 "" nsv433325 22 18416629 18427336 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463206 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA18507 nsv834134 22 18500604 18620000 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455706,nssv1455707 M 95 0 2 "" nsv459400 22 18539143 18563631 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536146 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00786 dgv544n27 22 18571023 18603096 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv459402,nsv459401 M 1557 0 2 "" HGDP00590,HGDP00602 nsv522212 22 18575067 18584609 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694988 S 2026 0 1 "" nsv519102 22 18660653 18681547 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696577 S 2026 0 1 "" nsv191296 22 18672371 18673035 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv209874 M 24 "" dgv16n31 22 18680001 18878620 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis nsv471543,nsv471478 M 3 "" nsv518950 22 18681547 19290109 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696417 S 2026 1 0 "" esv33990 22 18686287 18984130 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93772 S 51 0 1 "" 21972 nsv510803 22 18697681 19026804 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622802,nssv620171,nssv619020 M 4 0 3 "" NA10860,NA15510,NA18994 nsv510511 22 18707033 18713033 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622324 S 4 0 1 "" NA10860 nsv834135 22 19048932 19170117 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455708 S 95 1 0 "" nsv519901 22 19062457 19108275 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697115 S 2026 1 0 "" nsv834136 22 19063284 19216321 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455709 S 95 0 1 "" nsv509809 22 19067916 19156934 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619869 S 4 1 0 "" NA10860 nsv523162 22 19068090 19786907 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698872 S 2026 0 1 "" nsv834138 22 19083913 19275796 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455711,nssv1455710,nssv1455712 M 95 0 3 "" nsv3561 22 19157986 19192373 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4570,nssv2356,nssv5918 M 9 3 0 "" NA12878,NA18555,NA19129 nsv509810 22 19168744 19195671 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619870,nssv621143,nssv623844 M 4 3 0 "" NA10860,NA15510,NA18994 nsv834139 22 19236554 19362379 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455713 S 95 0 1 "" nsv3562 22 19258848 19293327 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1631,nssv5919 M 9 0 2 "" NA19129,NA19240 esv32695 22 19327927 19328205 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv96757,essv100992,essv98178,essv94445,essv97922,essv95727,essv94607,essv97082,essv99289 M 51 0 9 "" 21659,21693,21772,21808,21837,21841,21932,22075,22275 nsv516445 22 19334150 19353500 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705347,nssv685733,nssv663026,nssv681257,nssv674096,nssv677057,nssv678148,nssv655940,nssv668456 M 2026 6 3 "" nsv518753 22 19334407 19423851 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696202 S 2026 0 1 "" esv33770 22 19345798 19345839 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98920 S 51 0 1 "" 21606 nsv471533 22 19357191 19397302 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv547930,nssv547931,nssv547929 M 3 "" nsv834140 22 19421428 19630330 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455714 S 95 0 1 "" nsv834141 22 19538297 19730795 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455715 S 95 0 1 "" nsv191576 22 19652537 19656948 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv210154 M 24 "" nsv520145 22 19656110 19676674 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv683783,nssv677475,nssv676752,nssv679435,nssv661206 M 2026 0 5 "" nsv834142 22 19658687 19849078 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455719,nssv1455718,nssv1455716,nssv1455721,nssv1455717,nssv1455720,nssv1455722,nssv1455724,nssv1455726,nssv1455725,nssv1455727,nssv1455723 M 95 12 0 "" nsv482071 22 19678615 19680958 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558432 S 1 1 0 "" KB1 nsv3563 22 19691622 19736068 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2357 S 9 0 1 "" NA18555 nsv469751 22 19757625 19940794 CNV Gain Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649772 M 265 76 0 Samples from several populations that are part of the HapMap project. "" nsv471595 22 19757626 19940794 CNV Gain+Loss Sharp et al 2005 15918152 BAC_aCGH,FISH Eichler Segmental Duplication BAC array nssv550401,nssv550381,nssv550405,nssv550374,nssv550393,nssv550376,nssv550390,nssv550399,nssv550375,nssv550372,nssv550398,nssv550406,nssv550373,nssv550386,nssv550388,nssv550387,nssv550383,nssv550391,nssv550389,nssv550395,nssv550380,nssv550396,nssv550397,nssv550394,nssv550403,nssv550400,nssv550384,nssv550402,nssv550385,nssv550382,nssv550379,nssv550377,nssv550404,nssv550392,nssv550378 M 48 2 33 "" JK1051,JK776,NA10469,NA10471,NA10473,NA10492,NA10493,NA10494,NA10967,NA10969,NA10970,NA10971,NA10976,NA10979,NA11323,NA11523,NA15724,NA15727,NA15730,NA15731,NA15732,NA15733,NA16688,NA16689,NA17014,NA17015,NA17016,NA17017,NA17020,NA17051,NA17052,NA17058,NA17059,P86GA nsv437849 22 19778477 20122905 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467730 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19211 nsv524039 22 19779308 19779679 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699903 S 2026 0 1 "" nsv438327 22 19783358 19785828 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470816,nssv470815 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA19210,NA19211 nsv471490 22 19790229 20120277 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv547818,nssv547817,nssv547816 M 3 "" nsv834143 22 19842546 19993159 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455751,nssv1455745,nssv1455746,nssv1455750,nssv1455747,nssv1455770,nssv1455748,nssv1455749,nssv1455752,nssv1455757,nssv1455756,nssv1455754,nssv1455753,nssv1455755,nssv1455765,nssv1455759,nssv1455760,nssv1455763,nssv1455769,nssv1455764,nssv1455762,nssv1455788,nssv1455768,nssv1455766,nssv1455773,nssv1455772,nssv1455777,nssv1455774,nssv1455785,nssv1455781,nssv1455784,nssv1455786,nssv1455787,nssv1455779,nssv1455790,nssv1455789,nssv1455771,nssv1455758,nssv1455778,nssv1455744,nssv1455740,nssv1455782,nssv1455737,nssv1455743,nssv1455775,nssv1455783,nssv1455780,nssv1455761,nssv1455742,nssv1455767,nssv1455731,nssv1455776,nssv1455730,nssv1455729,nssv1455728,nssv1455791,nssv1455735,nssv1455734,nssv1455733,nssv1455738,nssv1455741,nssv1455732,nssv1455736,nssv1455739 M 95 63 1 "" nsv834144 22 19842546 20001403 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455798,nssv1455834,nssv1455806,nssv1455797,nssv1455796,nssv1455795,nssv1455792,nssv1455794,nssv1455793,nssv1455819,nssv1455799,nssv1455801,nssv1455800,nssv1455803,nssv1455802,nssv1455833,nssv1455805,nssv1455811,nssv1455808,nssv1455807,nssv1455809,nssv1455810,nssv1455818,nssv1455814,nssv1455813,nssv1455812,nssv1455815,nssv1455816,nssv1455817,nssv1455820,nssv1455830,nssv1455822,nssv1455823,nssv1455821,nssv1455832,nssv1455824,nssv1455825,nssv1455828,nssv1455826,nssv1455827,nssv1455829,nssv1455831,nssv1455835,nssv1455850,nssv1455838,nssv1455837,nssv1455836,nssv1455840,nssv1455849,nssv1455839,nssv1455848,nssv1455843,nssv1455842,nssv1455841,nssv1455847,nssv1455844,nssv1455846,nssv1455804,nssv1455845,nssv1455851,nssv1455853,nssv1455852,nssv1455856,nssv1455854,nssv1455855 M 95 65 0 "" nsv191429 22 19862371 19862424 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv210007 M 24 "" nsv191577 22 19863065 19863172 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv210155 M 24 "" nsv509811 22 19994733 20007916 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623845,nssv619871,nssv621144 M 4 3 0 "" NA10860,NA15510,NA18994 nsv7350 22 20004803 25971221 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4573,nssv6967,nssv9606,nssv6978,nssv5922,nssv11046,nssv10316,nssv1639,nssv6968,nssv5926,nssv5921 M 9 0 0 "" NA12156,NA12878,NA15510,NA18507,NA18956,NA19129,NA19240 nsv191300 22 20007182 20007256 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv209878 M 24 "" nsv469545 22 20014749 20220783 CNV Gain Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649655 M 265 44 0 Samples from several populations that are part of the HapMap project. "" nsv471596 22 20014750 20220783 CNV Gain+Loss Sharp et al 2005 15918152 BAC_aCGH,FISH Eichler Segmental Duplication BAC array nssv549106,nssv549109,nssv549118,nssv549108,nssv549117,nssv549100,nssv549123,nssv549114,nssv549112,nssv549115,nssv549121,nssv549104,nssv549110,nssv549120,nssv549105,nssv549124,nssv549113,nssv549119,nssv549101,nssv549102,nssv549099,nssv549107,nssv549122,nssv549111,nssv549116,nssv549103 M 48 2 24 "" JK1688,NA10469,NA10471,NA10494,NA10495,NA10496,NA10967,NA10969,NA10970,NA10971,NA10976,NA10979,NA11323,NA15724,NA15726,NA15727,NA15729,NA15730,NA15731,NA15733,NA16688,NA17015,NA17016,NA17051,NA17052,NA17058 nsv511071 22 20041304 20247929 OTHER Inversion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622436 S 4 0 0 "" NA10860 nsv442791 22 20050552 20169848 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv834145 22 20099623 20274643 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455857,nssv1455859,nssv1455858 M 95 0 3 "" nsv192 22 20155445 20174990 OTHER Inversion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv192 S 1 0 0 "" NA15510 nsv516806 22 20307446 20321624 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv671059,nssv674169,nssv656215,nssv659433,nssv659272 M 2026 0 5 "" nsv510804 22 20349085 20457318 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619021 S 4 0 1 "" NA10860 nsv528344 22 20370157 20371341 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704927 S 2026 0 1 "" nsv191511 22 20377120 20383339 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv210089 M 24 "" nsv3564 22 20459690 20491059 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5923 S 9 1 0 "" NA19129 dgv20e196 22 20468662 20766713 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array esv2422277,esv2422295 M 181 2 0 "" ND04305,ND05283 esv2422374 22 20476802 20919800 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161419 S 181 1 0 "" ND05052 dgv21e196 22 20476802 21452517 CNV Deletion Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array esv2422217,esv2422446,esv2422343,esv2422382,esv2422403,esv2422370,esv2422362 M 181 0 7 "" ND00679,ND01527,ND01577,ND01630,ND01887,ND03792,ND04568 esv2422390 22 20482518 21437136 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161353 S 181 1 0 "" ND02652 dgv256n21 22 20519629 20530165 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv525475,nsv517918 M 2026 0 2 "" dgv22e196 22 20522878 21056141 CNV Deletion Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array esv2422372,esv2422223 M 181 0 2 "" ND01674,ND03527 nsv527816 22 20524524 20529347 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704311 S 2026 0 1 "" esv2422338 22 20535487 20741960 CNV Deletion Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161529 S 181 0 1 "" ND01567 dgv23e196 22 20544600 20898185 CNV Deletion Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array esv2422458,esv2422394 M 181 0 2 "" ND03071,ND05067 nsv469782 22 20573672 20747625 CNV Gain Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649803 M 265 2 0 Samples from several populations that are part of the HapMap project. "" nsv834146 22 20573673 20747625 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455861,nssv1455860 M 95 2 0 "" esv2422476 22 20581142 20621053 CNV Deletion Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161496 S 181 0 1 "" ND01220 nsv3566 22 20594178 20625724 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv11047 S 9 1 0 "" NA15510 nsv516394 22 20614957 20908809 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698845,nssv672569,nssv680307,nssv684623,nssv677659,nssv696599,nssv687409,nssv691773,nssv655286,nssv669405,nssv685519,nssv704076,nssv683651,nssv672471,nssv694868,nssv686813,nssv673240,nssv682931,nssv705336,nssv699051,nssv695056,nssv668016 M 2026 12 10 "" dgv1388e1 22 20619657 20733158 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2594,esv315,essv6385 M 271 0 0 "" NA18572,NA18990 nsv9875 22 20637434 21602449 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23159 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18572 dgv545n27 22 20639017 20904355 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv459409,nsv459404,nsv459416,nsv459422,nsv459405,nsv459415,nsv459408,nsv459406 M 1557 8 0 "" 1780854100_A,1780854430_A,1780862529_A,HGDP00954,HGDP01211,HGDP01396,NINDS_202,NINDS_247 dgv546n27 22 20652945 20904355 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv459410,nsv459428 M 1557 0 2 "" 1798860049_A,HGDP00963 nsv526328 22 20652945 21235614 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702618 S 2026 1 0 "" nsv459421 22 20661066 21235614 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536158 S 1557 1 0 "" NINDS_272 nsv459423 22 20686907 20716887 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536160 S 1557 0 1 "" NINDS_139 dgv1389e1 22 20693407 20733158 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv18941,essv11288,essv10770,essv21340,essv24387 M 271 0 0 "" NA12005,NA12707,NA12878,NA18523,NA19204 nsv3567 22 20700416 21596819 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2361,nssv9607,nssv5925,nssv9371,nssv11050,nssv4574,nssv6969,nssv6973,nssv4575,nssv2360 M 9 0 7 "" NA12156,NA12878,NA15510,NA18507,NA18517,NA18555,NA19129 nsv438328 22 20705599 20709560 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470817 S 269 0 1 Samples from several populations that are part of the HapMap project. "" NA19221 nsv459424 22 20705881 20719303 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536161 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01385 nsv459425 22 20705881 20762604 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536162 S 1557 0 1 "" 1780862071_A dgv547n27 22 20708595 21564581 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv459426,nsv459432,nsv459427,nsv459434,nsv459431,nsv459433,nsv459430,nsv459437,nsv459446 M 1557 0 9 "" HGDP00538,HGDP00664,HGDP00675,HGDP00713,HGDP00787,HGDP00828,HGDP00879,HGDP00986,HGDP01035 nsv433326 22 20709560 20718698 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463207 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA12878 nsv438329 22 20710988 20718781 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470820,nssv470819 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA12707,NA12716 nsv442504 22 20710992 20716147 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv817937 22 20712886 21501540 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416211 S 112 0 1 "" NA12878 nsv433327 22 20724977 20761993 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463208 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA12878 dgv548n27 22 20725560 21436415 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv459449,nsv459443,nsv459447,nsv459435 M 1557 0 4 "" HGDP00723,HGDP00775,HGDP00903,HGDP01062 nsv438330 22 20751455 20771129 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470821,nssv470823,nssv470822 M 269 0 3 Samples from several populations that are part of the HapMap project. "" NA12707,NA12716,NA12878 nsv433328 22 20765383 20823863 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463209 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA12878 nsv459436 22 20779134 20792460 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536173 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00924 nsv438331 22 20779134 20808466 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470825,nssv470826,nssv470827,nssv470828,nssv470824,nssv470830 M 269 0 4 Samples from several populations that are part of the HapMap project. "" NA10839,NA12005,NA12707,NA12716 nsv817938 22 20779134 20875438 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416118 S 112 0 1 "" NA12813 dgv37n64 22 20779134 21041122 CNV Loss Wang_et_al_2007 17921354 SNP_array nsv817940,nsv817941,nsv817942 M 112 0 3 "" NA07348,NA10851,NA18972 nsv459438 22 20783711 20822928 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536175 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00129 nsv507927 22 20791337 20797337 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623319 S 4 1 0 "" NA18994 nsv3568 22 20798384 20818226 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3079,nssv6970 M 9 2 0 "" NA12156,NA18555 nsv508725 22 20799978 20811058 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621145 S 4 1 0 "" NA15510 nsv438332 22 20814462 20826387 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470831 S 269 0 1 Samples from several populations that are part of the HapMap project. "" NA12878 nsv438333 22 20829876 20830894 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470832,nssv470833 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA12878,NA12892 nsv433329 22 20841759 20845306 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463210 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA12878 dgv549n27 22 20841759 20846819 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv459442,nsv459439 M 1557 0 2 "" 1780854009_A,HGDP00655 nsv438334 22 20841759 20858133 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470834 S 269 0 1 Samples from several populations that are part of the HapMap project. "" NA18972 nsv459444 22 20844325 20848241 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536181 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00812 nsv459445 22 20856126 20875438 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536182 S 1557 0 1 "" NINDS_53 nsv438335 22 20861052 20881216 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470835 S 269 0 1 Samples from several populations that are part of the HapMap project. "" NA12873 nsv433330 22 20861400 20893589 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463211 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA12878 nsv469749 22 20880152 21047485 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649770 M 265 0 2 Samples from several populations that are part of the HapMap project. "" nsv834147 22 20882703 21076222 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455862 S 95 0 1 "" nsv459448 22 20887428 20904355 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536185 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01386 nsv459450 22 20892316 21190977 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536187 S 1557 0 1 "" 1780862226_A nsv817943 22 20896408 21073052 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417081 S 112 0 1 "" NA06994 esv2422480 22 20898185 21247093 CNV Deletion Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161270 S 181 0 1 "" ND03522 nsv459451 22 20898191 20925466 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536188 S 1557 0 1 "" NINDS_51 nsv433331 22 20904376 20925466 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463212 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA12878 esv33844 22 21001862 21080890 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv95760,essv94564 M 51 2 0 "" 21911,21932 nsv459453 22 21005866 21048025 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536190 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00674 nsv459454 22 21005866 21075658 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536191 S 1557 1 0 "" 1780862484_A dgv550n27 22 21005866 21389874 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv459456,nsv459457,nsv459466,nsv459455 M 1557 0 4 "" HGDP00575,HGDP00932,HGDP01067,HGDP01086 dgv38n64 22 21005866 21436415 CNV Loss Wang_et_al_2007 17921354 SNP_array nsv817954,nsv817949,nsv817945,nsv817944,nsv817947 M 112 0 5 "" NA11993,NA12044,NA12239,NA12249,NA12740 dgv551n27 22 21005866 21580423 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv459533,nsv459483,nsv459532,nsv459505,nsv459512,nsv459477,nsv459516,nsv459465,nsv459472,nsv459467,nsv459508,nsv459459,nsv459501,nsv459506,nsv459471,nsv459536,nsv459535,nsv459482,nsv459462,nsv459481,nsv459484,nsv459509,nsv459534,nsv459497,nsv459461,nsv459464,nsv459468,nsv459537,nsv459510,nsv459458,nsv459525,nsv459460 M 1557 0 32 "" 1780854339_A,1780854522_A,1780862127_A,1780862165_A,1780862547_A,1798860280_A,1798860443_A,HGDP00262,HGDP00267,HGDP00407,HGDP00460,HGDP00476,HGDP00517,HGDP00522,HGDP00527,HGDP00542,HGDP00546,HGDP00600,HGDP00604,HGDP00606,HGDP00693,HGDP00772,HGDP00777,HGDP00914,HGDP01021,HGDP01203,HGDP01226,HGDP01238,HGDP01260,NINDS_106,NINDS_90,NINDS_91 nsv433333 22 21006319 21026377 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463214 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA12878 nsv438336 22 21019040 21026845 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470837,nssv470836 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA18523,NA18871 nsv521774 22 21019040 21053737 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694096 S 2026 1 0 "" nsv459469 22 21019040 21104182 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536206 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00821 nsv459470 22 21024656 21074744 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536207 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01023 nsv3569 22 21025115 21060069 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7733,nssv1633,nssv2358 M 9 3 0 "" NA12156,NA18555,NA19240 nsv438338 22 21026944 21558650 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470925,nssv470875,nssv470859,nssv470902,nssv470853,nssv470883,nssv470922,nssv470862,nssv470873,nssv470900,nssv470893,nssv470908,nssv470878,nssv470884,nssv470889,nssv470872,nssv470877,nssv470886,nssv470914,nssv470919,nssv470854,nssv470871,nssv470847,nssv470926,nssv470887,nssv470857,nssv470906,nssv470839,nssv470869,nssv470909,nssv470864,nssv470855,nssv470891,nssv470842,nssv470844,nssv470881,nssv470882,nssv470850,nssv470911,nssv470845,nssv470915,nssv470903,nssv470916,nssv470923,nssv470879,nssv470904,nssv470921,nssv470920,nssv470860,nssv470917,nssv470912,nssv470905,nssv470898,nssv470838,nssv470858,nssv470865,nssv470866,nssv470841,nssv470901,nssv470897,nssv470924,nssv470861,nssv470888,nssv470870,nssv470856,nssv470894,nssv470868,nssv470880,nssv470913,nssv470927,nssv470910,nssv470867,nssv470890,nssv470848,nssv470849,nssv470876,nssv470899,nssv470892,nssv470895,nssv470843,nssv470846 M 269 0 38 Samples from several populations that are part of the HapMap project. "" NA06985,NA06994,NA07048,NA07055,NA07357,NA10831,NA10839,NA10846,NA10855,NA10857,NA10860,NA11831,NA11992,NA11993,NA12005,NA12044,NA12707,NA12716,NA12801,NA12813,NA12864,NA12873,NA18500,NA18502,NA18523,NA18526,NA18871,NA18914,NA18943,NA18945,NA18972,NA19140,NA19142,NA19144,NA19145,NA19154,NA19203,NA19205 nsv834149 22 21030247 21221762 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455864,nssv1455863,nssv1455865,nssv1455866 M 95 0 4 "" nsv459473 22 21031117 21047036 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536210 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00863 nsv459475 22 21034063 21053798 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536212 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01032 nsv508726 22 21034910 21081082 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621146,nssv619873,nssv623846,nssv619872 M 4 3 0 "" NA10860,NA15510,NA18994 nsv459476 22 21036316 21047036 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536213 S 1557 0 1 "" 1780862311_A nsv469735 22 21039148 21202147 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649756 M 265 0 6 Samples from several populations that are part of the HapMap project. "" nsv459478 22 21041122 21048025 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536215 S 1557 0 1 "" 1780854459_A dgv552n27 22 21041122 21060845 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv459479,nsv459486,nsv459480 M 1557 0 3 "" HGDP00243,HGDP00290,HGDP00412 dgv39n64 22 21041122 21548612 CNV Loss Wang_et_al_2007 17921354 SNP_array nsv817955,nsv817948,nsv817946,nsv817952 M 112 0 4 "" NA06994,NA07357,NA12801,NA18972 dgv553n27 22 21041998 21073052 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv459490,nsv459489,nsv459491,nsv459488,nsv459492,nsv459487 M 1557 6 0 "" HGDP00001,HGDP00054,HGDP00191,HGDP00206,HGDP00208,HGDP00230 nsv459493 22 21045853 21074744 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536229 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00444 nsv459494 22 21045853 21131349 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536230 S 1557 0 1 "" NINDS_109 nsv518537 22 21046254 21065409 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695981 S 2026 1 0 "" nsv459495 22 21050926 21065409 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536231 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01099 dgv554n27 22 21053030 21073052 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv459498,nsv459499 M 1557 0 2 "" HGDP00234,HGDP00945 dgv23n14 22 21053737 21193683 CNV Loss Cooper et al 2008 18776910 SNP_array nsv433334,nsv433335 M 9 0 2 "" NA12878,NA18517 dgv555n27 22 21053737 21387444 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv459531,nsv459544,nsv459541,nsv459500,nsv459526,nsv459542,nsv459523,nsv459503 M 1557 0 8 "" 1780854449_A,1780854484_A,1780862460_A,HGDP00736,HGDP01047,HGDP01193,NINDS_104,NINDS_64 dgv556n27 22 21057955 21214082 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv459519,nsv459530,nsv459502,nsv459528 M 1557 0 4 "" 1780854511_A,HGDP00798,HGDP01359,NINDS_220 nsv193 22 21060381 21079973 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv193 S 1 1 0 "" NA15510 nsv3570 22 21060381 21087339 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1634,nssv6971,nssv11048 M 9 3 0 "" NA12156,NA15510,NA19240 dgv557n27 22 21060845 21501540 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv459543,nsv459524,nsv459514,nsv459504 M 1557 0 4 "" HGDP00472,HGDP00474,HGDP00634,HGDP00970 dgv558n27 22 21065409 21284973 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv459515,nsv459520,nsv459522,nsv459511 M 1557 0 4 "" HGDP00169,HGDP00234,HGDP00319,HGDP00938 dgv559n27 22 21070079 21104182 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv459517,nsv459513 M 1557 0 2 "" HGDP00462,HGDP00736 nsv459527 22 21095471 21116954 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536262 S 1557 0 1 "" NINDS_49 nsv817953 22 21095471 21186548 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415716 S 112 1 0 "" NA12248 nsv834150 22 21107429 21291279 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455873,nssv1455871,nssv1455872,nssv1455869,nssv1455870,nssv1455868,nssv1455867 M 95 0 7 "" nsv817956 22 21116954 21164113 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416521 S 112 0 1 "" NA18517 nsv459538 22 21116954 21167511 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536273 S 1557 0 1 "" 1780854436_A nsv459539 22 21116954 21265188 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536274 S 1557 0 1 "" NINDS_203 nsv821694 22 21127641 21512862 CNV Loss Sebat_et_al_2004 15273396 ROMA Custom Nimblegen photoprint 85000 probe ROMA oligo array nssv1421332 S 31 0 1 "" nsv817957 22 21142175 21244766 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417559 S 112 1 0 "" NA18971 nsv459546 22 21148836 21190977 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536280 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01066 nsv817958 22 21158310 21190977 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417212 S 112 1 0 "" NA18558 nsv508727 22 21180821 21219336 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619874,nssv621147,nssv623847 M 4 3 0 "" NA10860,NA15510,NA18994 nsv511072 22 21180821 21219336 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618682 S 4 0 0 "" CHM nsv459548 22 21184683 21215862 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536281 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01239 esv33016 22 21186686 21197201 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93212 S 51 1 0 "" 22170 nsv194 22 21191540 21204180 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv194 S 1 1 0 "" NA15510 nsv3571 22 21191540 21211559 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5924,nssv2359,nssv1636,nssv10317,nssv6972,nssv11049 M 9 6 0 "" NA12156,NA15510,NA18555,NA18956,NA19129,NA19240 dgv560n27 22 21193772 21395782 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv459550,nsv459549 M 1557 0 2 "" HGDP00614,HGDP00925 nsv433336 22 21195711 21215346 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463217 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA18517 nsv469742 22 21210775 21411681 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649763 M 265 24 20 Samples from several populations that are part of the HapMap project. "" nsv433337 22 21227506 21325307 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463218 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA12878 nsv459553 22 21240660 21559346 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536286 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01037 nsv191339 22 21245429 21245480 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv209917 M 24 "" nsv834151 22 21248392 21440190 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455878,nssv1455882,nssv1455880,nssv1455881,nssv1455875,nssv1455877,nssv1455874,nssv1455876,nssv1455879 M 95 0 9 "" nsv520343 22 21249549 21250256 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv691022,nssv689764,nssv663080 M 2026 0 3 "" nsv510512 22 21253708 21259708 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622326 S 4 0 1 "" NA10860 nsv817959 22 21265188 21290256 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415798 S 112 1 0 "" NA12874 nsv459554 22 21322891 21346581 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536287 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00371 nsv521695 22 21322891 21972563 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698316 S 2026 0 1 "" nsv459555 22 21326035 21387418 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536288 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00445 nsv459556 22 21326035 21388737 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536289 S 1557 1 0 "" NINDS_34 dgv561n27 22 21336872 21559346 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv459581,nsv459557 M 1557 2 0 "" HGDP01191,NINDS_45 dgv562n27 22 21336872 21573594 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv459580,nsv459583,nsv459582,nsv459592,nsv459588,nsv459593,nsv459587,nsv459584,nsv459559,nsv459586,nsv459589,nsv459558 M 1557 0 12 "" 1780854294_A,1780862094_A,1782681076_A,HGDP00412,HGDP00479,HGDP00682,HGDP00687,HGDP00704,HGDP00963,HGDP00998,HGDP01001,HGDP01023 nsv817960 22 21337263 21348299 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417102 S 112 1 0 "" NA18529 nsv522367 22 21337905 21381016 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695147 S 2026 0 1 "" nsv459560 22 21348299 21387444 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536293 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01230 dgv563n27 22 21348299 21470188 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv459561,nsv459579,nsv459578 M 1557 0 3 "" HGDP00804,HGDP00931,HGDP01256 dgv564n27 22 21356133 21395782 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv459571,nsv459562,nsv459572,nsv459590,nsv459564,nsv459576,nsv459573,nsv459569,nsv459568,nsv459565,nsv459575,nsv459570,nsv459566,nsv459567 M 1557 0 14 "" 1780854097_A,1787431197_A,HGDP00469,HGDP00470,HGDP00473,HGDP00905,HGDP00917,HGDP00926,HGDP00928,HGDP00932,HGDP00933,HGDP00935,HGDP00946,HGDP01418 nsv817961 22 21356133 21395782 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418241,nssv1418242 M 112 0 2 "" NA19144,NA19145 dgv565n27 22 21356133 21436415 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv459591,nsv459577 M 1557 0 2 "" 1780862250_A,HGDP00906 dgv40n64 22 21356133 21548612 CNV Loss Wang_et_al_2007 17921354 SNP_array nsv817968,nsv817963 M 112 0 2 "" NA06985,NA18971 nsv517485 22 21356133 21603147 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696378,nssv685423,nssv657562,nssv692945,nssv691850,nssv654960,nssv660375,nssv657165,nssv683305,nssv653391,nssv688960,nssv686339,nssv693291,nssv699967,nssv689313,nssv687940,nssv667752,nssv660788,nssv686227,nssv659017,nssv682910,nssv666399,nssv673969,nssv652668,nssv689267,nssv673968,nssv666052,nssv675672,nssv664316,nssv658019,nssv667916,nssv703259,nssv658623,nssv660739,nssv678849,nssv661301,nssv663305,nssv666903,nssv656545,nssv662768,nssv669688,nssv671191,nssv674385,nssv683211,nssv657324,nssv659434,nssv681165,nssv688050,nssv682452,nssv689801,nssv651782,nssv657101,nssv664925,nssv680000,nssv681061,nssv666480,nssv658639,nssv660691,nssv688797,nssv682025,nssv693574,nssv678928,nssv657420,nssv681720,nssv679050,nssv671060,nssv669384,nssv654008,nssv677754,nssv674439,nssv655428,nssv698690,nssv670484,nssv691023,nssv665670,nssv674806,nssv669974,nssv685401,nssv658676,nssv664808,nssv673312,nssv654572,nssv701738,nssv685098,nssv682135,nssv669512,nssv669753,nssv657966,nssv675447,nssv688267,nssv675887,nssv679200,nssv658501,nssv660901,nssv687499,nssv675770,nssv678812,nssv684300 M 2026 14 84 "" nsv433178 22 21364916 21564581 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463059 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA12878 dgv41n64 22 21379168 21395782 CNV Loss Wang_et_al_2007 17921354 SNP_array nsv817967,nsv817964 M 112 0 3 "" NA10830,NA12236,NA18999 dgv566n27 22 21379168 21395782 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv459606,nsv459594 M 1557 0 2 "" HGDP01033,HGDP01250 dgv567n27 22 21379168 21436415 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv459597,nsv459633,nsv459608,nsv459609,nsv459595 M 1557 0 5 "" 1780862521_A,1780862576_A,1782681277_A,HGDP00565,HGDP00676 nsv817965 22 21379168 21436415 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417610 S 112 0 1 "" NA18978 dgv568n27 22 21379168 21501540 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv459610,nsv459628,nsv459598 M 1557 0 3 "" 1780862461_A,HGDP00650,HGDP00964 nsv817966 22 21379168 21548612 CNV Gain+Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418036,nssv1417105,nssv1415877 M 112 1 2 "" NA07348,NA10857,NA11992 dgv569n27 22 21379168 21580423 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv459639,nsv459601,nsv459637,nsv459631,nsv459634,nsv459599,nsv459620,nsv459602,nsv459613,nsv459643,nsv459614,nsv459615,nsv459627,nsv459624,nsv459600,nsv459617,nsv459635,nsv459623,nsv459616,nsv459611,nsv459641,nsv459622,nsv459619,nsv459632,nsv459636,nsv459603,nsv459612,nsv459625,nsv459621,nsv459630,nsv459642,nsv459626,nsv459638,nsv459604 M 1557 0 34 "" 1780854449_A,1780862408_A,1780862460_A,HGDP00092,HGDP00169,HGDP00319,HGDP00457,HGDP00471,HGDP00521,HGDP00535,HGDP00575,HGDP00679,HGDP00680,HGDP00691,HGDP00723,HGDP00736,HGDP00775,HGDP00779,HGDP00782,HGDP00794,HGDP01015,HGDP01094,HGDP01207,HGDP01218,HGDP01237,HGDP01239,HGDP01332,HGDP01383,HGDP01411,NINDS_239,NINDS_39,NINDS_6,NINDS_62,NINDS_79 nsv459605 22 21381016 21392030 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536337 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00428 dgv42n64 22 21387166 21533073 CNV Gain Wang_et_al_2007 17921354 SNP_array nsv817972,nsv817969 M 112 3 0 "" NA10863,NA12146,NA12264 dgv43n64 22 21388737 21395782 CNV Loss Wang_et_al_2007 17921354 SNP_array nsv817971,nsv817970 M 112 0 2 "" NA07029,NA18992 nsv469839 22 21389431 21565251 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649860 M 265 35 32 Samples from several populations that are part of the HapMap project. "" nsv471597 22 21389432 21565251 CNV Loss Sharp et al 2005 15918152 BAC_aCGH,FISH Eichler Segmental Duplication BAC array nssv550826,nssv550835,nssv550848,nssv550828,nssv550838,nssv550827,nssv550847,nssv550843,nssv550845,nssv550830,nssv550834,nssv550849,nssv550833,nssv550832,nssv550829,nssv550846,nssv550837,nssv550840,nssv550842,nssv550844,nssv550839,nssv550836,nssv550831,nssv550841 M 48 0 24 "" JK1061,JK776,NA10470,NA10471,NA10472,NA10493,NA10495,NA10496,NA10970,NA11323,NA11523,NA11776,NA15725,NA15726,NA15727,NA15728,NA15730,NA15731,NA15733,NA16689,NA17014,NA17016,NA17051,P86GA nsv834152 22 21395304 21547283 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455890,nssv1455884,nssv1455885,nssv1455886,nssv1455889,nssv1455888,nssv1455887,nssv1455891,nssv1455883 M 95 0 9 "" nsv507928 22 21422237 21428237 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620701 S 4 1 0 "" NA15510 nsv817974 22 21436415 21470188 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416383 S 112 1 0 "" NA19142 nsv817975 22 21436415 21533073 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417167,nssv1415799,nssv1415800,nssv1416119 M 112 4 0 "" NA12812,NA12874,NA12875,NA18547 nsv817976 22 21436415 21548612 CNV Gain+Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417201,nssv1418123,nssv1418122 M 112 2 1 "" NA10859,NA11882,NA18558 dgv570n27 22 21436415 21575608 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv459647,nsv459649,nsv459645,nsv459646,nsv459644,nsv459648 M 1557 0 6 "" HGDP00281,HGDP00534,HGDP00613,HGDP00925,HGDP01250,NINDS_34 nsv817977 22 21470188 21533073 CNV Gain+Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416018,nssv1416019 M 112 1 1 "" NA12750,NA12751 dgv571n27 22 21470188 21564581 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv459654,nsv459652,nsv459650,nsv459653 M 1557 0 4 "" 1780862226_A,HGDP00903,HGDP01062,HGDP01203 nsv195 22 21476328 21576188 CNV Loss Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv195 S 1 0 1 "" NA15510 nsv459655 22 21478612 21586914 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536386 S 1557 0 1 "" 1780854318_A esv33722 22 21483268 21562842 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101488,essv98667,essv97605,essv101263,essv93947,essv96838,essv101011,essv95130,essv98318,essv94693,essv93999,essv101324,essv94435,essv96961,essv97897,essv95573,essv95450,essv93153,essv95235,essv97363,essv101723,essv95767,essv94638,essv99112,essv92973,essv92759,essv93730,essv96150,essv96706,essv97090,essv95987,essv93469,essv93287,essv99644,essv95022,essv92588,essv96482,essv99304,essv97765,essv100230,essv100493,essv100400,essv98390,essv96374,essv94188 M 51 45 0 "" 21603,21606,21616,21618,21634,21659,21693,21721,21772,21791,21802,21805,21808,21817,21837,21841,21847,21863,21872,21879,21909,21911,21932,21938,21939,21944,21972,22007,22011,22075,22127,22128,22170,22217,22231,22233,22261,22275,22278,22286,22298,22300,22352,22371,22394 nsv817978 22 21496744 21548612 CNV Gain+Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416288,nssv1416287 M 112 1 1 "" NA10851,NA12056 dgv572n27 22 21496744 21564581 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv459657,nsv459665,nsv459656,nsv459660,nsv459658,nsv459666,nsv459661,nsv459667,nsv459664,nsv459659 M 1557 0 10 "" 1780854288_A,1780862461_A,HGDP00189,HGDP00234,HGDP00474,HGDP00608,HGDP00614,HGDP00650,HGDP00897,HGDP00938 nsv834153 22 21497074 21674194 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455892,nssv1455894,nssv1455893,nssv1455895,nssv1455896 M 95 0 5 "" nsv433338 22 21526450 21553744 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463219 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA18517 nsv459668 22 21533073 21549389 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536398 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00806 dgv573n27 22 21533073 21564581 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv459671,nsv459672,nsv459670,nsv459669 M 1557 0 4 "" HGDP00472,HGDP00591,HGDP00611,HGDP01099 nsv508728 22 21534300 21629505 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619875 S 4 1 0 "" NA10860 nsv459673 22 21548612 21559346 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536403 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01238 dgv574n27 22 21548612 21564581 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv459676,nsv459675 M 1557 0 2 "" HGDP00653,HGDP00721 nsv3572 22 21560192 21616972 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv11051,nssv2362,nssv10318,nssv4577,nssv6976 M 9 5 0 "" NA12156,NA12878,NA15510,NA18555,NA18956 nsv196 22 21570554 21594928 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv196 S 1 1 0 "" NA15510 nsv516045 22 21687906 21688924 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv687450,nssv665874 M 2026 2 0 "" dgv19e24 22 21755991 21756558 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH esv2750592,esv2750722,esv2750763,esv2750514,esv2750610,esv2750479,esv2750493,esv2750520,esv2750586,esv2750595,esv2750618,esv2750628,esv2750659,esv2750660,esv2750667,esv2750746,esv2750747,esv2750772 M 51 0 18 "" 21603,21616,21618,21693,21721,21791,21802,21805,21872,21879,21909,21932,21939,22075,22127,22217,22233,22286 nsv3573 22 21766097 21810374 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2363 S 9 0 1 "" NA18555 nsv525485 22 21774509 21779276 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701614 S 2026 0 1 "" esv33363 22 21779932 21780244 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101460,essv95221,essv97965,essv95514,essv93108,essv95286,essv97441,essv101677,essv94633,essv99000,essv93416,essv96552,essv97681,essv100277,essv100577,essv98484 M 51 3 13 "" 21603,21721,21837,21847,21863,21872,21879,21909,21932,21938,22128,22261,22278,22286,22298,22352 esv33083 22 21803170 21803782 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101113,essv101041,essv95234,essv94699,essv101384,essv97912,essv95736,essv95485,essv93065,essv95290,essv97330,essv101703,essv94576,essv96725,essv96016,essv99666,essv94934,essv92629,essv100131,essv98375 M 51 15 5 "" 21618,21693,21721,21791,21805,21837,21841,21847,21863,21872,21879,21909,21932,22011,22127,22217,22231,22233,22286,22352 nsv9876 22 21887885 22247613 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27775,nssv28116,nssv25773,nssv26362,nssv25191 M 31 3 2 Samples from several populations that are part of the HapMap project. "" NA10839,NA10863,NA18537,NA18860,NA19132 nsv526567 22 22014879 23321184 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702883 S 2026 1 0 "" nsv522451 22 22054252 22066659 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705812 S 2026 0 1 "" nsv469702 22 22068194 22215310 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649635 M 265 0 0 Samples from several populations that are part of the HapMap project. "" nsv834154 22 22073257 22227046 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455899,nssv1455900,nssv1455897,nssv1455898 M 95 4 0 "" nsv528171 22 22105629 22177048 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704720 S 2026 0 1 "" esv33260 22 22132916 22142830 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv96081 S 51 1 0 "" 22007 nsv508729 22 22155164 22213080 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619876,nssv621148 M 4 2 0 "" NA10860,NA15510 nsv511073 22 22155164 22251505 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624369 S 4 0 0 "" NA18994 nsv3574 22 22170349 22187072 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9608,nssv2364,nssv1637,nssv9372 M 9 4 0 "" NA18507,NA18517,NA18555,NA19240 nsv459677 22 22220179 22280319 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536407 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01155 nsv520582 22 22245981 22305422 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv681940,nssv672815 M 2026 2 0 "" nsv459682 22 22245981 22319610 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536408 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00473 nsv437850 22 22258006 22284741 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467731 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18503 nsv9877 22 22258243 22275389 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28727 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19221 nsv438339 22 22269923 22271906 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470930,nssv470928 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA18503,NA18505 nsv482072 22 22275194 22299041 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558433 S 1 1 0 "" KB1 nsv191262 22 22286298 22290530 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv209840 M 24 "" nsv526278 22 22303896 22319767 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702557 S 2026 0 1 "" esv2751941 22 22356569 22375025 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6982671,essv6982672 M 771 1 0 "" BEC_578 nsv3575 22 22374036 22385184 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4578 S 9 1 0 "" NA12878 nsv511075 22 22487018 22768071 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624370,nssv621661,nssv622437 M 4 0 0 "" NA10860,NA15510,NA18994 nsv834155 22 22504717 22784295 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455901,nssv1455902 M 95 1 1 "" nsv3577 22 22526591 22561926 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1638 S 9 1 0 "" NA19240 dgv1390e1 22 22581891 22727762 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv12912,esv1027,essv5959,essv11374,essv1646 M 271 0 0 "" NA18577,NA18961,NA19094,NA19127 nsv191455 22 22583518 22584497 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv210033 M 24 "" nsv3578 22 22586650 22754672 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2367,nssv2366,nssv10320,nssv9609,nssv9610,nssv4579,nssv1640,nssv9373,nssv6977,nssv10319,nssv2365,nssv11053 M 9 0 8 "" NA12156,NA12878,NA15510,NA18507,NA18517,NA18555,NA18956,NA19240 nsv197 22 22590016 22660596 CNV Loss Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv197 S 1 0 1 "" NA15510 nsv469844 22 22590796 22824469 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649865 M 265 0 0 Samples from several populations that are part of the HapMap project. "" nsv9878 22 22598667 22731171 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25241,nssv26046,nssv26423,nssv22325,nssv26408,nssv25216,nssv26274,nssv26415,nssv25930,nssv23215,nssv26026,nssv26047,nssv27782,nssv22923,nssv25493,nssv26438,nssv27259,nssv27379,nssv22445,nssv25291,nssv25817,nssv22505,nssv28120,nssv27958,nssv26358,nssv27988,nssv28730,nssv24665,nssv22475,nssv27299,nssv24639,nssv25910,nssv25502,nssv26103,nssv28728,nssv22865,nssv26480,nssv25525,nssv22922,nssv26308,nssv25931,nssv22894,nssv24727,nssv25330,nssv26111,nssv25389,nssv25414,nssv24701,nssv26494,nssv25795,nssv25838,nssv26466,nssv25888,nssv27853,nssv27355,nssv28729,nssv25643,nssv26084,nssv26065,nssv25859,nssv22535,nssv25665,nssv26342,nssv26291,nssv24691,nssv26753,nssv24675,nssv22355,nssv25469,nssv23187,nssv22385,nssv25982,nssv22807,nssv27308,nssv26325,nssv22836,nssv27983,nssv26404,nssv25266,nssv27973,nssv27346,nssv27361,nssv24753,nssv27860,nssv25981,nssv27337,nssv27328,nssv27326,nssv26122,nssv26452,nssv26430,nssv25909,nssv25548,nssv25571,nssv24649,nssv28122,nssv26066,nssv27370,nssv27978,nssv27968,nssv27364,nssv27335,nssv26002,nssv27317,nssv25880,nssv28118,nssv26130 M 31 24 21 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10847,NA10863,NA11830,NA12155,NA12740,NA12802,NA12872,NA18502,NA18504,NA18517,NA18537,NA18552,NA18563,NA18564,NA18572,NA18853,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19144,NA19173,NA19221,NA19240 nsv442792 22 22607570 22665339 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" essv6078 22 22608070 22656453 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18621 nsv433179 22 22609610 22621684 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463060 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA19240 nsv471423 22 22638108 22646573 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548239,nssv548240 M 3 "" nsv482073 22 22638108 22646573 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558434 S 1 1 0 "" KB1 nsv471424 22 22646868 22650660 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548241,nssv548242 M 3 "" nsv482074 22 22646868 22650660 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558435 S 1 1 0 "" KB1 esv33747 22 22651407 22665952 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv94972,essv98407 M 51 2 0 "" 22231,22352 nsv516816 22 22660881 22662625 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv660595,nssv683953,nssv671127,nssv671496,nssv690799 M 2026 0 5 "" esv33707 22 22665951 22729409 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98853,essv97491,essv93890,essv93881,essv100800,essv96749,essv100930,essv95153,essv98270,essv94102,essv101410,essv97798,essv95566,essv95528,essv94570,essv92857,essv93610,essv99980,essv95967,essv93438,essv99739,essv94957,essv99281,essv100281,essv100467,essv99366,essv98459,essv96256 M 51 18 9 "" 21606,21616,21634,21656,21659,21693,21721,21772,21802,21805,21837,21841,21847,21932,21939,21972,22086,22127,22128,22217,22231,22275,22286,22298,22335,22352,22371 nsv442793 22 22675083 22721368 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv433180 22 22683126 22709659 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463061 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA18555 nsv482075 22 22700693 22708838 CNV Loss Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558436 S 1 0 1 "" KB1 nsv438340 22 22701387 22701483 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470946,nssv470935,nssv470941,nssv470933,nssv470932,nssv470931,nssv470945,nssv470943,nssv470942,nssv470936,nssv470938,nssv470934,nssv470939,nssv470937,nssv470944 M 269 0 15 Samples from several populations that are part of the HapMap project. "" NA07056,NA07357,NA10838,NA10851,NA10856,NA10857,NA10861,NA11829,NA11832,NA12043,NA12044,NA12239,NA12751,NA12865,NA12874 nsv834156 22 22725284 22866905 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455905,nssv1455906,nssv1455904,nssv1455903 M 95 1 3 "" esv33744 22 22729824 22731200 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100747 S 51 0 1 "" 21656 nsv834157 22 22778671 22962757 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455907 S 95 1 0 "" nsv508730 22 22801580 22928873 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619878 S 4 1 0 "" NA10860 nsv834158 22 22846809 23014392 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455908 S 95 1 0 "" nsv528842 22 22859783 22968163 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705519 S 2026 0 1 "" nsv9881 22 22899141 22907237 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv24778 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA07029 nsv528009 22 22940060 22968163 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704535 S 2026 0 1 "" nsv9882 22 22957352 22988330 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26508,nssv27796,nssv27964,nssv27867,nssv24803,nssv27789,nssv28124,nssv25316,nssv25516,nssv27344 M 31 6 3 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10863,NA12155,NA18517,NA18537,NA18860,NA18972,NA19132 nsv9883 22 22994040 23000426 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27970,nssv28126,nssv26522,nssv25539,nssv27803,nssv25341 M 31 5 1 Samples from several populations that are part of the HapMap project. "" NA07048,NA10863,NA18517,NA18537,NA18860,NA19132 nsv834160 22 23050494 23228209 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455909,nssv1455910 M 95 2 0 "" nsv9884 22 23136147 23382770 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26536,nssv28761,nssv27353,nssv27810,nssv27874,nssv28128 M 31 4 2 Samples from several populations that are part of the HapMap project. "" NA12155,NA18537,NA18860,NA18972,NA19132,NA19221 nsv482076 22 23328209 23349526 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558437 S 1 1 0 "" KB1 dgv1391e1 22 23382276 23422245 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv327,essv12368 M 271 0 0 "" NA19138 nsv521963 22 23404479 23423669 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694731 S 2026 0 1 "" nsv3579 22 23422585 23456501 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5927 S 9 1 0 "" NA19129 nsv522434 22 23442474 23470007 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705790 S 2026 1 0 "" nsv834161 22 23590296 23758574 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455911 S 95 1 0 "" nsv3580 22 23651716 23695779 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4580 S 9 0 1 "" NA12878 nsv459683 22 23665757 23712872 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536409 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00780 nsv459684 22 23690268 23773158 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536410 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00655 dgv1392e1 22 23691355 24371067 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv536,essv23412 M 271 0 0 "" NA10854 nsv524236 22 23734820 23740577 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700126 S 2026 0 1 "" nsv469581 22 23737440 23897413 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649695 M 265 0 10 Samples from several populations that are part of the HapMap project. "" nsv9885 22 23751223 23757988 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25594 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18552 nsv9886 22 23763486 23765738 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25687,nssv27373 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18504,NA18853 esv33826 22 23786104 23792126 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv94524 S 51 0 1 "" 21932 nsv3581 22 23813884 23827723 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7734 S 9 1 0 "" NA12156 dgv24e196 22 23836805 24124424 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array esv2422356,esv2422293,esv2422413,esv2422380,esv2422255 M 181 5 0 "" ND00700,ND00940,ND01754,ND05093,ND05370 nsv834162 22 23869914 24033564 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455912 S 95 0 1 "" dgv1393e1 22 23874371 24371067 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv14372,essv21848,essv22657,essv15835,essv5452,essv16687,essv21036,essv22459,essv10987,essv7775,essv24005,essv16412,essv12286,essv12013,essv6146,essv21235,essv24874,essv24234,essv10061,essv24403,essv9591,essv3435,essv21089,essv7864 M 271 0 0 "" NA06991,NA07000,NA10854,NA10856,NA11830,NA11839,NA12707,NA12716,NA12752,NA12761,NA18507,NA18532,NA18542,NA18558,NA18632,NA18956,NA19099,NA19138,NA19139,NA19141,NA19142,NA19143,NA19223 nsv518136 22 23878033 23880502 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695554 S 2026 0 1 "" nsv191604 22 23900561 23900610 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv210182 M 24 "" nsv9887 22 23913704 23915956 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25355,nssv26001 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18563,NA18975 nsv469659 22 23923464 24087403 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649588 M 265 1 2 Samples from several populations that are part of the HapMap project. "" nsv9888 22 23925331 23967622 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28762 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19221 dgv175e55 22 23932339 24287542 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv34320,esv34452,esv2751944,esv2751960,esv2751951,esv2751954,esv35154,esv34331,esv34282,esv2751950,esv34375,esv34386,esv34404,esv34420,esv34668,esv34683,esv34840,esv34857,esv34934,esv34965,esv34990,esv35024,esv2751942,esv2751943,esv2751946,esv2751947,esv2751948,esv2751949,esv2751953,esv2751955,esv2751956,esv2751959,esv2751962 M 771 33 0 "" BEC_101,BEC_106,BEC_131,BEC_236,BEC_379,BEC_387,BEC_511,BEC_562,BEC_630,BEC_725,BEC_745,BEC_793,NA06985,NA06991,NA10854,NA11839,NA12752,NA12761,NA18507,NA18532,NA18542,NA18558,NA18632,NA18956,NA18973,NA19099,NA19138,NA19139,NA19221,NA19223,SPC_124,SPC_162,SPC_86 dgv1394e1 22 23932716 24281461 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1324,essv25124,essv11851,essv15970,essv20716,essv5433,essv6859,essv20514,essv25148,essv8970,essv12086,essv19352,essv22344,essv22412,essv10505,essv21751,essv9530,essv7647,essv21959,essv20533,essv21880,essv21643,essv19073,essv11053,essv7996 M 271 0 0 "" NA06985,NA06991,NA07000,NA10856,NA10861,NA11830,NA11839,NA11995,NA12716,NA12752,NA12761,NA18542,NA18558,NA18632,NA18973,NA19099,NA19138,NA19139,NA19142,NA19143,NA19221,NA19223 nsv834163 22 23936202 24129653 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455913,nssv1455914 M 95 1 1 "" dgv575n27 22 23947877 24235221 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv459770,nsv459775,nsv459748,nsv459776,nsv459800,nsv459778,nsv459854,nsv459787,nsv459756,nsv459777,nsv459782,nsv459755,nsv459788,nsv459767,nsv459694,nsv459743,nsv459779,nsv459736,nsv459763,nsv459766,nsv459732,nsv459786,nsv459781,nsv459784,nsv459802,nsv459734,nsv459761,nsv459794 M 1557 0 28 "" 1780846322_A,1780854235_A,1780854341_A,1780854445_A,1780854530_A,1780862399_A,1780862414_A,1780862460_A,1798860084_A,1798860565_A,HGDP00131,HGDP00192,HGDP00298,HGDP00526,HGDP00567,HGDP00583,HGDP00665,HGDP00689,HGDP00716,HGDP00731,HGDP00740,HGDP00903,HGDP00970,HGDP01047,HGDP01238,HGDP01417,NINDS_229,NINDS_35 dgv576n27 22 23947877 24283506 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv459768,nsv459750,nsv459700,nsv459749,nsv459741,nsv459769,nsv459745,nsv459737,nsv459702,nsv459747,nsv459706,nsv459753,nsv459701,nsv459764,nsv459790,nsv459725,nsv459727,nsv459772,nsv459791,nsv459708,nsv459795,nsv459699,nsv459780,nsv459709,nsv459765,nsv459798,nsv459728,nsv459712,nsv459719,nsv459739,nsv459793,nsv459714,nsv459697,nsv459722,nsv459730,nsv459705,nsv459731,nsv459735,nsv459723,nsv459752,nsv459783,nsv459710,nsv459713,nsv459801,nsv459720,nsv459789,nsv459717,nsv459698,nsv459726,nsv459715,nsv459797,nsv459746,nsv459771,nsv459758,nsv459738,nsv459760,nsv459757,nsv459703,nsv459724,nsv459803,nsv459733,nsv459754,nsv459695,nsv459721,nsv459799,nsv459744,nsv459711,nsv459759 M 1557 68 0 "" 1780854123_A,1780854129_A,1780854198_A,1780854467_A,1780862101_A,1780862160_A,1780862196_A,1780862298_A,1780862356_A,1780862505_A,1780862584_A,1780862597_A,1782681169_A,1787431167_A,1798860592_A,HGDP00005,HGDP00015,HGDP00096,HGDP00141,HGDP00167,HGDP00213,HGDP00216,HGDP00234,HGDP00241,HGDP00264,HGDP00274,HGDP00313,HGDP00315,HGDP00330,HGDP00423,HGDP00545,HGDP00580,HGDP00804,HGDP00815,HGDP00819,HGDP00880,HGDP00938,HGDP00960,HGDP00966,HGDP00974,HGDP01029,HGDP01096,HGDP01193,HGDP01200,HGDP01201,HGDP01228,HGDP01229,HGDP01239,HGDP01245,HGDP01259,HGDP01270,HGDP01290,HGDP01334,HGDP01356,HGDP01369,HGDP01376,HGDP01377,HGDP01387,NINDS_123,NINDS_15,NINDS_169,NINDS_174,NINDS_195,NINDS_203,NINDS_209,NINDS_21,NINDS_210,NINDS_225 esv32748 22 23961316 24059954 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98902,essv100046 M 51 0 2 "" 21606,22086 dgv44n64 22 23965182 24235221 CNV Gain Wang_et_al_2007 17921354 SNP_array nsv817980,nsv817979,nsv817982 M 112 4 0 "" NA06985,NA06991,NA18542,NA18558 dgv577n27 22 23965182 24318567 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv459704,nsv459792,nsv459742 M 1557 3 0 "" HGDP00698,HGDP01255,HGDP01257 nsv517205 22 23965182 24350112 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv654847,nssv692127,nssv687177,nssv652560,nssv680127,nssv686793,nssv654009,nssv689000,nssv687820,nssv684029,nssv673053,nssv660962,nssv677095,nssv666481,nssv665971,nssv689220,nssv689898,nssv680153,nssv684745,nssv654627,nssv661415,nssv684319,nssv664356,nssv693037,nssv677476,nssv700151,nssv657257,nssv654259,nssv705590,nssv657398,nssv702381,nssv656011,nssv672531,nssv693856,nssv697028,nssv678688,nssv673005,nssv659804,nssv664408,nssv700084,nssv657937,nssv687008,nssv671428,nssv678172,nssv674415,nssv657281,nssv672509,nssv689289,nssv672320,nssv696936,nssv687410,nssv698888,nssv651783,nssv702137,nssv651985,nssv678224,nssv656980,nssv668559,nssv691806,nssv682522,nssv686263,nssv686140,nssv690196,nssv675834,nssv664597,nssv658950,nssv683930,nssv652745,nssv656286,nssv681721,nssv656123,nssv693260,nssv668791,nssv683713,nssv659454,nssv693603,nssv663401,nssv673208,nssv661072,nssv672738,nssv680212,nssv684242,nssv702380,nssv678884,nssv660198,nssv671268,nssv677873,nssv693230,nssv658540,nssv670966,nssv660183,nssv659116,nssv659720,nssv692633,nssv679256,nssv705963,nssv661387,nssv677453,nssv660516,nssv681554,nssv702909 M 2026 46 55 "" dgv176e55 22 23965579 24249632 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv34702,esv34647,esv34201,esv34716,esv34758,esv34960,esv35060,esv2751945,esv2751957,esv2751958,esv2751961 M 771 0 11 "" BEC_543,BEC_657,BEC_704,BEC_720,NA07000,NA10861,NA11830,NA12707,NA12716,NA19141,SPC_153 nsv9889 22 23973751 23983689 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26149 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA11830 dgv1395e1 22 23976814 24145392 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv21984,essv791 M 271 0 0 "" NA11995,NA18956 esv32873 22 23978652 24248609 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101447,essv97473,essv93796,essv94084,essv93967,essv94350,essv96978,essv93099,essv101741,essv95809,essv94588,essv92818,essv96662,essv97182,essv99825,essv99830,essv99843,essv93499,essv94913,essv96570,essv99175,essv97674,essv100116,essv100622,essv100412,essv98406 M 51 21 2 "" 21603,21616,21634,21802,21808,21817,21863,21909,21911,21932,21944,22011,22075,22086,22128,22231,22261,22275,22278,22286,22298,22300,22352 esv2751952 22 23983100 24475200 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6983066,essv6986343,essv6986342,essv6983065,essv6983064 M 771 1 0 "" BEC_538 nsv9890 22 23983689 24247744 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27993,nssv28763,nssv26217,nssv27881,nssv26198,nssv26236,nssv27817,nssv26254 M 31 3 2 Samples from several populations that are part of the HapMap project. "" NA11830,NA18502,NA18972,NA19132,NA19221 nsv459716 22 23986279 24168438 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536434 S 1557 1 0 "" NINDS_39 nsv433458 22 23986279 24235221 CNV Gain Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463339 S 9 1 0 Samples from several populations that are part of the HapMap project. "" NA18956 dgv45n64 22 23986279 24248998 CNV Loss Wang_et_al_2007 17921354 SNP_array nsv817981,nsv817985 M 112 0 3 "" NA10861,NA11995,NA19141 nsv442794 22 23988539 24243266 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv817983 22 23988962 24235221 CNV Gain+Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416995,nssv1416996,nssv1416405,nssv1418243,nssv1417085 M 112 2 3 "" NA07000,NA19138,NA19139,NA19142,NA19143 nsv507929 22 23991340 23997340 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621979 S 4 1 0 "" NA10860 nsv191221 22 24023096 24023239 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv209799 M 24 "" nsv459853 22 24024161 24086490 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536523 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00562 nsv834164 22 24031595 24199456 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455915,nssv1455916 M 95 1 1 "" nsv437190 22 24032026 24073272 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467071 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA10856 dgv177e55 22 24043800 24244331 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv34480,esv34249,esv35068,esv35149 M 771 0 4 "" NA10856,NA11995,NA19142,NA19143 nsv459855 22 24047854 24231357 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536525 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00023 nsv469622 22 24050173 24204080 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649547 M 265 6 4 Samples from several populations that are part of the HapMap project. "" nsv821696 22 24050614 24280963 CNV Gain Sebat_et_al_2004 15273396 ROMA Custom Nimblegen photoprint 85000 probe ROMA oligo array nssv1421334 S 31 1 0 "" nsv459856 22 24051546 24150620 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536526 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00564 dgv578n27 22 24057251 24235221 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv459858,nsv459857,nsv459859 M 1557 0 3 "" HGDP00103,HGDP00671,HGDP00952 nsv438341 22 24075427 24095027 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470949,nssv470948,nssv470947 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA12707,NA12716 nsv437193 22 24081228 24083344 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467074 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA12707 dgv68n17 22 24081228 24100089 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437194,nsv437192 M 60 0 2 "" NA10856,NA12707 nsv438342 22 24123186 24131503 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470950,nssv470952 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA10856,NA11830 nsv469691 22 24178068 24342644 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649623 M 265 4 4 Samples from several populations that are part of the HapMap project. "" nsv471598 22 24178069 24342644 CNV Gain+Loss Sharp et al 2005 15918152 BAC_aCGH,FISH Eichler Segmental Duplication BAC array nssv550109,nssv550106,nssv550105,nssv550108,nssv550107 M 48 4 1 "" NA10469,NA10493,NA15731,NA17016,NA17020 nsv437851 22 24190779 24248998 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467732 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19142 nsv437195 22 24193760 24232995 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467076 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA12707 essv24944 22 24228811 24231702 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12707 nsv438343 22 24230222 24233170 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470955,nssv470954,nssv470956,nssv470953 M 269 0 4 Samples from several populations that are part of the HapMap project. "" NA12707,NA12716,NA19141,NA19142 nsv9892 22 24279539 24286608 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28764 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19221 nsv9893 22 24286052 24295369 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27888 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18972 dgv1396e1 22 24460443 24475138 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv21886,esv1391 M 271 0 0 "" NA06991 nsv524218 22 24824971 24829393 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700106 S 2026 0 1 "" nsv834165 22 24833400 25012329 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455918,nssv1455917 M 95 1 1 "" nsv469709 22 24837692 25018848 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649730 M 265 0 3 Samples from several populations that are part of the HapMap project. "" nsv3582 22 24885823 24919485 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5928 S 9 1 0 "" NA19129 nsv3583 22 24909958 24922430 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7735 S 9 0 1 "" NA12156 nsv519472 22 25178995 25184496 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696871 S 2026 0 1 "" dgv1397e1 22 25223053 25354450 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv17844,esv141 M 271 0 0 "" NA10831 nsv9894 22 25350914 25357314 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27975 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18517 nsv525941 22 25566018 25570624 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702147 S 2026 0 1 "" nsv510805 22 25626626 25725185 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622803 S 4 0 1 "" NA18994 nsv3584 22 25820806 25855513 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1641 S 9 1 0 "" NA19240 nsv528403 22 25822980 25827121 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704993 S 2026 0 1 "" nsv526167 22 25937684 25940818 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702427 S 2026 0 1 "" nsv191325 22 25941683 25941824 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv209903 M 24 "" nsv834166 22 25953124 26138913 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455919 S 95 1 0 "" nsv520935 22 25976629 25976843 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv693231,nssv679645,nssv677985 M 2026 0 3 "" nsv522487 22 25980499 25982098 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705854 S 2026 0 1 "" nsv834167 22 26082949 26235539 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455920 S 95 1 0 "" nsv459864 22 26084640 26189898 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536531 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01320 nsv3585 22 26118507 26120718 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3080 S 9 1 0 "" NA18555 nsv459865 22 26176737 26192121 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536532 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01230 nsv834168 22 26184246 26386423 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455921 S 95 0 1 "" nsv521680 22 26268958 26271540 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698298 S 2026 0 1 "" nsv191530 22 26331688 26331688 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv210108 M 24 "" nsv518700 22 26512757 26528304 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696150 S 2026 1 0 "" nsv3586 22 26531170 26563579 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4581 S 9 1 0 "" NA12878 nsv522306 22 26703026 26727178 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694056 S 2026 0 1 "" nsv526760 22 27030774 27044210 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703110 S 2026 0 1 "" nsv3588 22 27299346 27332029 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6979 S 9 1 0 "" NA12156 nsv459867 22 27317737 27433590 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536533 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00144 nsv9895 22 27354515 27508831 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26764,nssv26580 M 31 1 1 Samples from several populations that are part of the HapMap project. "" NA18537,NA19144 nsv525906 22 27363981 27364169 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702110 S 2026 0 1 "" nsv834169 22 27420000 27628483 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455922,nssv1455923 M 95 0 2 "" nsv517951 22 27430112 27460443 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695363 S 2026 0 1 "" nsv516312 22 27478313 27484868 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv688426,nssv667504 M 2026 0 2 "" nsv3589 22 27589718 27613489 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7737 S 9 0 1 "" NA12156 nsv524259 22 27791775 27806775 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700156 S 2026 0 1 "" nsv519517 22 27802395 27806775 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv661686,nssv679878,nssv687500,nssv685378,nssv691915,nssv656591 M 2026 0 6 "" nsv524483 22 27849680 27954891 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700421 S 2026 0 1 "" nsv817986 22 27864851 27893517 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416020 S 112 0 1 "" NA12750 nsv522714 22 27937062 27954891 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698344 S 2026 0 1 "" nsv834171 22 27950956 28154398 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455924 S 95 0 1 "" nsv519651 22 27975459 27975547 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694340 S 2026 0 1 "" dgv579n27 22 28092479 28132409 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv459869,nsv459868 M 1557 2 0 "" HGDP01269,HGDP01276 nsv191528 22 28111157 28114318 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv210106 M 24 "" nsv438344 22 28180633 28210597 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470958,nssv470957 M 269 0 1 Samples from several populations that are part of the HapMap project. "" NA18552 nsv524511 22 28201971 28202179 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700455 S 2026 0 1 "" nsv834172 22 28223590 28382502 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455925 S 95 0 1 "" nsv510513 22 28235354 28241354 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621511,nssv624259 M 4 0 2 "" NA15510,NA18994 nsv521852 22 28299385 28307692 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694626 S 2026 0 1 "" nsv191315 22 28397552 28397552 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv209893 M 24 "" nsv515720 22 28406269 28488080 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv664554,nssv655407,nssv654961,nssv689899,nssv655367,nssv697956,nssv657818,nssv701308 M 2026 1 7 "" nsv817987 22 28488080 28493990 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417519 S 112 0 1 "" NA18968 nsv3590 22 28490577 28510742 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5929 S 9 1 0 "" NA19129 nsv523696 22 28650656 28706343 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699503 S 2026 1 0 "" nsv3591 22 28668762 28713451 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7738 S 9 0 1 "" NA12156 nsv507930 22 28761903 28767903 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620702,nssv617956 M 4 2 0 "" CHM,NA15510 nsv3592 22 28771325 28791988 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3081 S 9 1 0 "" NA18555 nsv507931 22 28774946 28780946 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621980 S 4 1 0 "" NA10860 nsv507932 22 28810233 28816233 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623320 S 4 1 0 "" NA18994 nsv834173 22 28839646 28982831 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455926 S 95 0 1 "" nsv527188 22 28854295 28906276 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703584 S 2026 1 0 "" nsv191239 22 28895865 28895865 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv209817 M 24 "" nsv524628 22 28899717 28906276 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700591 S 2026 1 0 "" esv33304 22 28927341 28927601 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93308 S 51 1 0 "" 22170 nsv834174 22 28944314 29071469 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455927,nssv1455928 M 95 1 1 "" esv33159 22 28944362 28944946 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93702 S 51 0 1 "" 21972 nsv522605 22 29009630 29016185 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705997 S 2026 0 1 "" nsv3593 22 29030534 29075676 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7739 S 9 0 1 "" NA12156 nsv834175 22 29301178 29414099 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455929 S 95 1 0 "" nsv522377 22 29556628 29573887 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695156 S 2026 1 0 "" nsv520242 22 29570299 29573887 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv692755,nssv681335,nssv662082,nssv676693,nssv697957 M 2026 4 1 "" nsv524629 22 29570299 29579508 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700592 S 2026 1 0 "" nsv9896 22 29693758 29838487 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27388 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19240 nsv524366 22 29765257 29804623 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700277 S 2026 0 1 "" nsv527382 22 29857514 29857779 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703817 S 2026 0 1 "" nsv459871 22 29875714 30005178 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536536 S 1557 0 1 "" 1780862226_A nsv507933 22 29916211 29922211 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623321,nssv620703,nssv621981 M 4 3 0 "" NA10860,NA15510,NA18994 nsv834176 22 30006980 30189255 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455930,nssv1455931 M 95 0 2 "" esv33955 22 30110552 30113494 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99950 S 51 0 1 "" 22086 nsv9897 22 30184767 30188696 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27894 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18972 nsv3594 22 30224643 30258248 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3082 S 9 1 0 "" NA18555 nsv517534 22 30302148 30349534 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv687411,nssv691875,nssv661911,nssv652289,nssv671400,nssv655941,nssv685538,nssv658385,nssv674567 M 2026 0 9 "" nsv3595 22 30465133 30498180 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7740 S 9 1 0 "" NA12156 nsv508731 22 30588550 30673091 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621150 S 4 1 0 "" NA15510 nsv834177 22 30741233 30919217 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455932 S 95 1 0 "" esv2422247 22 30811002 31112812 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161459 S 181 1 0 "" ND00665 nsv834178 22 30815003 31002075 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455933 S 95 0 1 "" nsv3596 22 30815883 30831645 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7741 S 9 0 1 "" NA12156 nsv459874 22 30898828 31191488 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536538 S 1557 1 0 "" NINDS_33 nsv3597 22 30912978 30957278 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2368 S 9 0 1 "" NA18555 nsv191540 22 31025845 31026288 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv210118 M 24 "" nsv519170 22 31090503 31095571 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696652 S 2026 1 0 "" nsv520296 22 31098683 31099498 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697333 S 2026 0 1 "" nsv526513 22 31167990 31168492 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702823 S 2026 0 1 "" nsv519086 22 31168492 31171670 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696560 S 2026 0 1 "" nsv520883 22 31182378 31182982 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697668 S 2026 0 1 "" nsv459875 22 31349734 31422216 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536539 S 1557 1 0 "" 1780862585_A nsv191249 22 31534858 31534858 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv209827 M 24 "" nsv3599 22 31554660 31599343 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7742 S 9 0 1 "" NA12156 nsv191235 22 31620313 31620630 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv209813 M 24 "" nsv3600 22 31645990 31693183 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2370,nssv5930 M 9 2 0 "" NA18555,NA19129 nsv507934 22 31733782 31739782 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621982,nssv623322,nssv620704 M 4 3 0 "" NA10860,NA15510,NA18994 nsv528534 22 31783685 31793585 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705145 S 2026 0 1 "" nsv3601 22 31818605 31852604 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3083 S 9 1 0 "" NA18555 nsv528580 22 31900374 31902704 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705199 S 2026 0 1 "" nsv510514 22 31912681 31918681 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622327 S 4 0 1 "" NA10860 nsv519681 22 31941359 31949399 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv657551,nssv681125,nssv686228,nssv689940 M 2026 0 4 "" nsv3602 22 32020322 32050874 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4582 S 9 1 0 "" NA12878 nsv3603 22 32053998 32087540 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4583 S 9 1 0 "" NA12878 nsv521249 22 32061797 32065414 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv689361,nssv688341 M 2026 0 2 "" nsv191505 22 32065236 32065315 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv210083 M 24 "" nsv459876 22 32071178 32100984 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536540 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00141 esv32905 22 32076169 32076370 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100707 S 51 1 0 "" 21656 esv32847 22 32081997 32084575 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101459,essv97489,essv101005,essv101328,essv101720,essv94592,essv96520,essv100217 M 51 0 8 "" 21603,21616,21693,21805,21909,21932,22261,22286 nsv526030 22 32085158 32100984 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702261 S 2026 1 0 "" esv2751963 22 32180066 32260451 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6988516,essv6982290,essv6986133 M 771 1 0 "" BEC_411 dgv1398e1 22 32193499 32234100 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv3269,essv5539,essv22926,essv3404,essv11618,essv538,essv10751,esv234,essv18262,essv24934,essv11266,essv17769 M 271 0 0 "" NA06994,NA07357,NA10831,NA10846,NA18523,NA18529,NA18945,NA18972,NA18998,NA19154,NA19204 nsv191468 22 32286281 32286281 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv210046 M 24 "" nsv3604 22 32313617 32346226 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6980 S 9 1 0 "" NA12156 nsv519677 22 32420689 32422971 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv657537,nssv657744 M 2026 0 2 "" nsv459878 22 32431299 32551146 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536541 S 1557 0 1 "" 1780854481_A nsv524432 22 32444420 32470922 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700359 S 2026 0 1 "" nsv522709 22 32449530 32455707 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv706121 S 2026 1 0 "" nsv524156 22 32470150 32585292 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700035 S 2026 0 1 "" dgv1399e1 22 32494349 32528033 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2436,esv338 M 271 0 0 "" NA18999 nsv526550 22 32529484 32546513 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702864 S 2026 0 1 "" nsv507935 22 32838388 32844388 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623323,nssv617957,nssv621983,nssv620705 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv834179 22 32865359 33014878 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455934 S 95 0 1 "" dgv257n21 22 32868064 32874189 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv527465,nsv522965 M 2026 0 2 "" dgv1400e1 22 33068219 33107464 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv24906,esv367 M 271 0 0 "" NA06994 nsv3605 22 33125081 33141362 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10321 S 9 1 0 "" NA18956 nsv510515 22 33216463 33222463 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618465 S 4 0 1 "" CHM nsv3606 22 33354379 33417259 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9375 S 9 0 1 "" NA18517 nsv517599 22 33432477 33435562 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv679730,nssv652474 M 2026 0 2 "" nsv523254 22 33432477 33441872 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698983 S 2026 0 1 "" nsv834180 22 33459207 33673461 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455935 S 95 1 0 "" nsv3607 22 33577860 33623883 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6981 S 9 0 1 "" NA12156 nsv9898 22 33618939 33624338 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25617,nssv26594,nssv22951,nssv28057,nssv27382,nssv22565,nssv26445,nssv26419,nssv25562,nssv27900,nssv27854,nssv23243,nssv24717,nssv27427,nssv22952,nssv28765,nssv26021,nssv26775,nssv26141,nssv24828,nssv25901,nssv28130,nssv26085,nssv26022,nssv25380,nssv27980,nssv26272,nssv25366,nssv27362,nssv25739 M 31 30 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10847,NA10863,NA11830,NA12155,NA12740,NA12802,NA12872,NA18502,NA18504,NA18517,NA18537,NA18552,NA18563,NA18564,NA18572,NA18853,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19144,NA19173,NA19221,NA19240 nsv437196 22 33619659 33624182 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467077 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA10851 nsv817988 22 33620933 33623060 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416290,nssv1416289 M 112 0 2 "" NA10851,NA12056 nsv438345 22 33621009 33622552 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470960,nssv470959 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA10851,NA12056 nsv526234 22 33651914 33652294 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702501 S 2026 0 1 "" nsv3608 22 33683606 33717633 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7743 S 9 1 0 "" NA12156 nsv834182 22 33706698 33879797 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1455977,nssv1455969,nssv1455995,nssv1455944,nssv1456004,nssv1455951,nssv1455973,nssv1455983,nssv1455943,nssv1456000,nssv1455945,nssv1455999,nssv1455972,nssv1455946,nssv1455998,nssv1455948,nssv1455950,nssv1455954,nssv1455974,nssv1455976,nssv1455949,nssv1455975,nssv1455996,nssv1455979,nssv1456001,nssv1455971,nssv1455982,nssv1455953,nssv1455997,nssv1455978,nssv1455947,nssv1456002,nssv1456003,nssv1455968,nssv1455981,nssv1455965,nssv1455952,nssv1455980,nssv1455970,nssv1455994,nssv1455987,nssv1455958,nssv1456007,nssv1455957,nssv1455942,nssv1456006,nssv1455955,nssv1455956,nssv1455985,nssv1456005,nssv1455986,nssv1455984,nssv1455959,nssv1456009,nssv1455962,nssv1455966,nssv1455967,nssv1455941,nssv1455990,nssv1455989,nssv1455963,nssv1456008,nssv1455993,nssv1455961,nssv1455960,nssv1455936,nssv1455937,nssv1455940,nssv1455992,nssv1455938,nssv1455939,nssv1456010,nssv1455991,nssv1455988,nssv1455964 M 95 75 0 "" nsv526797 22 33738001 33751981 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703151 S 2026 0 1 "" dgv1401e1 22 33762965 33957507 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv7027,esv756 M 271 0 0 "" NA18612 nsv834183 22 33769216 33954079 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1456023,nssv1456056,nssv1456066,nssv1456052,nssv1456034,nssv1456067,nssv1456072,nssv1456021,nssv1456071,nssv1456069,nssv1456022,nssv1456070,nssv1456050,nssv1456020,nssv1456068,nssv1456017,nssv1456049,nssv1456074,nssv1456073,nssv1456048,nssv1456028,nssv1456077,nssv1456027,nssv1456029,nssv1456026,nssv1456025,nssv1456024,nssv1456014,nssv1456055,nssv1456051,nssv1456015,nssv1456016,nssv1456031,nssv1456030,nssv1456054,nssv1456075,nssv1456053,nssv1456059,nssv1456035,nssv1456065,nssv1456019,nssv1456013,nssv1456076,nssv1456058,nssv1456039,nssv1456033,nssv1456057,nssv1456040,nssv1456032,nssv1456038,nssv1456037,nssv1456036,nssv1456047,nssv1456046,nssv1456043,nssv1456064,nssv1456062,nssv1456061,nssv1456042,nssv1456060,nssv1456018,nssv1456041,nssv1456063,nssv1456012,nssv1456011,nssv1456045,nssv1456044 M 95 67 0 "" esv35003 22 33780857 33896051 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6979723,essv6988228,essv6988229,essv6979722,essv6979724 M 771 0 1 "" NA18612 essv7049 22 33785204 33902969 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18612 esv32783 22 33785881 33786309 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98735,essv97593,essv94738,essv94121,essv94378,essv97852,essv95681,essv93109,essv97300,essv95872,essv98959,essv97101,essv93556,essv93269,essv94944,essv100165 M 51 3 13 "" 21606,21616,21791,21802,21808,21837,21841,21863,21879,21911,21938,22075,22128,22170,22231,22286 nsv817989 22 33787203 33874785 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417359 S 112 0 1 "" NA18612 esv33922 22 33931077 33938722 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100758 S 51 1 0 "" 21656 esv33138 22 33970041 33970560 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101161,essv100886,essv96771,essv95103,essv98335,essv101282,essv97070,essv95413,essv95806,essv94523,essv92988,essv92669,essv96236,essv96711,essv96031,essv93331,essv94898,essv92542,essv100455,essv100361,essv96293 M 51 21 0 "" 21618,21656,21659,21721,21772,21805,21817,21847,21911,21932,21939,21944,22007,22011,22127,22170,22231,22233,22298,22300,22371 nsv3610 22 34066998 34080582 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9869 S 9 1 0 "" NA18507 nsv520762 22 34078967 34086204 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704977,nssv675092,nssv683240 M 2026 2 1 "" nsv3611 22 34083930 34105700 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9611 S 9 1 0 "" NA18507 nsv520686 22 34131369 34133321 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697556 S 2026 0 1 "" nsv834184 22 34222591 34342186 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1456078 S 95 0 1 "" nsv817990 22 34262881 34296381 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415719 S 112 1 0 "" NA12248 nsv510806 22 34320156 34356767 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619022 S 4 0 1 "" NA10860 nsv511076 22 34356767 34472296 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624371,nssv618616 M 4 0 0 "" CHM,NA18994 nsv3612 22 34433661 34482256 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1642,nssv4584,nssv9870,nssv2371,nssv5931,nssv6982 M 9 6 0 "" NA12156,NA12878,NA18507,NA18555,NA19129,NA19240 nsv527454 22 34489605 34501077 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703895 S 2026 1 0 "" nsv3613 22 34618323 34652377 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3084 S 9 1 0 "" NA18555 nsv519467 22 34658761 34721006 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv681837,nssv692808,nssv685120,nssv703896,nssv656287 M 2026 5 0 "" nsv3614 22 34738711 34771285 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10322 S 9 1 0 "" NA18956 dgv258n21 22 34802527 34805381 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv518100,nsv522315 M 2026 0 2 "" esv2751964 22 34858285 34904061 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6985383,essv6990125,essv6985381,essv6985382 M 771 0 1 "" SPC_157 nsv526454 22 34864352 34907584 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702757 S 2026 0 1 "" nsv521866 22 34875658 34880294 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694638 S 2026 0 1 "" nsv517600 22 34896416 34897015 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv664987,nssv664335,nssv652476,nssv657593,nssv672082,nssv667917,nssv662818,nssv659018,nssv690077,nssv684697,nssv658020,nssv687267,nssv662051,nssv664737,nssv689765,nssv659837 M 2026 0 16 "" nsv817991 22 34896416 34897015 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416619 S 112 0 1 "" NA19172 nsv522931 22 34940945 35039135 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698594 S 2026 1 0 "" nsv834185 22 34951350 35112595 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1456079 S 95 0 1 "" nsv523911 22 34999650 35023492 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699754 S 2026 0 1 "" nsv523629 22 35003558 35008854 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699428 S 2026 0 1 "" nsv520497 22 35020442 35290742 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697455 S 2026 1 0 "" nsv834186 22 35056423 35231312 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1456080,nssv1456083,nssv1456082,nssv1456084,nssv1456081 M 95 0 5 "" dgv1402e1 22 35231063 35366534 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv6737,esv20 M 271 0 0 "" NA18562 nsv3615 22 35242696 35265195 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9612 S 9 1 0 "" NA18507 nsv191574 22 35256300 35258781 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv210152 M 24 "" nsv9899 22 35266789 35275417 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28766 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19221 nsv442507 22 35268281 35273245 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv9900 22 35283116 35285735 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27906 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18972 nsv9901 22 35296402 35301751 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27861 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19132 nsv3616 22 35428857 35436777 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4585 S 9 0 1 "" NA12878 nsv511077 22 35439521 35515738 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622438,nssv624372 M 4 0 0 "" NA10860,NA18994 nsv3617 22 35448230 35542362 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2372,nssv9871,nssv6983,nssv10323,nssv7744,nssv4586,nssv11054 M 9 0 6 "" NA12156,NA12878,NA15510,NA18507,NA18555,NA18956 nsv191162 22 35451590 35451761 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv209740 M 24 "" nsv507936 22 35454038 35460038 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617958,nssv620706 M 4 2 0 "" CHM,NA15510 esv33536 22 35462846 35469055 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100038 S 51 1 0 "" 22086 nsv510516 22 35466610 35472610 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618466 S 4 0 1 "" CHM nsv191525 22 35467670 35472395 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv210103 M 24 "" esv33500 22 35468290 35471525 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93877,essv93861,essv100843,essv96819,essv100960,essv95116,essv98279,essv94784,essv94669,essv94063,essv97021,essv97827,essv97805,essv95612,essv95423,essv95282,essv95349,essv98971,essv92695,essv92729,essv93627,essv96667,essv97207,essv93505,essv93292,essv93215,essv99574,essv94985,essv96557,essv99269,essv99264,essv100278,essv100201,essv100389,essv100356 M 51 3 23 "" 21634,21656,21659,21693,21721,21772,21791,21802,21817,21837,21841,21847,21872,21938,21944,21972,22011,22075,22128,22170,22217,22231,22261,22275,22286,22300 nsv3618 22 35495667 35530255 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4587 S 9 1 0 "" NA12878 dgv1403e1 22 35499654 35533870 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv11201,essv22962,essv24671,essv24410,essv17848,essv19024 M 271 0 0 "" NA07357,NA10831,NA11829,NA12005,NA12707,NA19204 dgv1404e1 22 35499654 35569272 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv20283,essv18070,essv875,essv4183,essv17925,essv5580,essv15742,essv19672,essv11722,essv10162,essv14293,essv24927,essv23043,essv16365,essv6584,essv586,essv18264,essv3389,essv23139,essv21431,essv22476 M 271 0 0 "" NA06994,NA10846,NA12003,NA12144,NA12145,NA12264,NA12717,NA12761,NA12812,NA12891,NA18526,NA18529,NA18621,NA18945,NA18998,NA19000,NA19130,NA19131,NA19154,NA19193,NA19194 dgv1405e1 22 35499654 35685405 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv21863,essv7188,essv10753,esv360,essv18236,essv19493,essv17473 M 271 0 0 "" NA11839,NA12057,NA12762,NA12864,NA18523,NA18547 nsv522590 22 35521471 35523376 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705979 S 2026 0 1 "" nsv3619 22 35577067 35598207 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1643 S 9 1 0 "" NA19240 nsv459881 22 35583003 35596302 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536542 S 1557 0 1 "" NINDS_51 nsv3621 22 35601401 35613195 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7745 S 9 0 1 "" NA12156 nsv834187 22 35686144 35883800 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1456085 S 95 0 1 "" nsv459882 22 35688464 35881938 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536543 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00627 nsv3622 22 35732810 35764210 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6984 S 9 1 0 "" NA12156 nsv834188 22 35931198 36116719 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1456086 S 95 0 1 "" nsv459883 22 35936307 35963460 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536544 S 1557 0 1 "" NINDS_78 nsv528767 22 35963460 35975344 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705431 S 2026 1 0 "" nsv519765 22 35973182 35975344 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv689979,nssv658386,nssv695555 M 2026 2 1 "" nsv520286 22 35973182 35982039 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697326 S 2026 1 0 "" nsv834189 22 36003989 36167883 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1456088,nssv1456087 M 95 1 1 "" nsv817992 22 36004171 36131803 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415720 S 112 1 0 "" NA12248 nsv834190 22 36013546 36140000 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1456093,nssv1456107,nssv1456092,nssv1456091,nssv1456089,nssv1456090,nssv1456095,nssv1456094,nssv1456098,nssv1456097,nssv1456096,nssv1456101,nssv1456100,nssv1456106,nssv1456105,nssv1456104,nssv1456103,nssv1456102,nssv1456113,nssv1456112,nssv1456110,nssv1456108,nssv1456111,nssv1456109,nssv1456115,nssv1456114,nssv1456099 M 95 0 27 "" nsv528254 22 36058952 36072894 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704820 S 2026 0 1 "" esv33451 22 36121815 36122007 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv94833,essv99259 M 51 2 0 "" 21791,22275 nsv834191 22 36254280 36437851 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1456117,nssv1456116 M 95 0 2 "" nsv523705 22 36304994 36310227 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699514 S 2026 0 1 "" nsv817993 22 36304994 36310227 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416416 S 112 0 1 "" NA19141 dgv1406e1 22 36328377 36590378 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv9188,essv20670,esv181,essv10635,essv17286,essv9810,essv15502 M 271 0 0 "" NA12892,NA18505,NA18855,NA18856,NA18863,NA19128 nsv528985 22 36395543 36416160 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705685 S 2026 0 1 "" nsv9903 22 36443462 36445523 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27985 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18517 nsv9904 22 36466071 36468520 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27912,nssv22981,nssv26289 M 31 2 1 Samples from several populations that are part of the HapMap project. "" NA11830,NA12872,NA18972 nsv191391 22 36579903 36583610 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv209969 M 24 "" nsv834193 22 36717836 36892597 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1456120,nssv1456121,nssv1456119,nssv1456118,nssv1456122 M 95 0 5 "" nsv834194 22 36784002 36961010 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1456130,nssv1456125,nssv1456124,nssv1456132,nssv1456123,nssv1456131,nssv1456128,nssv1456127,nssv1456126,nssv1456129 M 95 0 10 "" nsv527871 22 36799196 36805159 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704370 S 2026 0 1 "" nsv508732 22 36816862 36900698 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623848 S 4 1 0 "" NA18994 nsv3623 22 36826042 36834308 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7746 S 9 1 0 "" NA12156 nsv519015 22 36893506 36931280 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696483 S 2026 0 1 "" nsv834195 22 37020871 37210936 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1456133 S 95 0 1 "" nsv817994 22 37133985 37190363 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415721 S 112 1 0 "" NA12248 nsv3624 22 37272686 37323282 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7747,nssv2373 M 9 0 2 "" NA12156,NA18555 nsv3625 22 37346342 37371831 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10324 S 9 1 0 "" NA18956 nsv508733 22 37347757 37404965 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618143,nssv619879,nssv621151 M 4 3 0 "" CHM,NA10860,NA15510 nsv520961 22 37584532 37593285 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv686005,nssv678793 M 2026 0 2 "" nsv525343 22 37584532 37606136 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701461 S 2026 0 1 "" nsv521128 22 37600500 37606136 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694083 S 2026 0 1 "" nsv9905 22 37616333 37627055 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27948,nssv22980,nssv25391,nssv22595,nssv24853,nssv23009,nssv26160,nssv26306,nssv25922,nssv27371 M 31 0 10 Samples from several populations that are part of the HapMap project. "" NA07029,NA10839,NA10847,NA10863,NA11830,NA12155,NA12802,NA12872,NA18972,NA18980 esv33184 22 37618672 37621332 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101612,essv97463,essv101267,essv100816,essv101064,essv95219,essv98302,essv94676,essv94457,essv97058,essv97942,essv95701,essv93029,essv101721,essv94610,essv96117,essv98578,essv93577,essv93395,essv99670,essv94965,essv92577,essv99263,essv100264,essv98454,essv94177 M 51 16 10 "" 21603,21616,21618,21656,21693,21721,21772,21791,21808,21817,21837,21841,21863,21909,21932,22007,22085,22128,22170,22217,22231,22233,22275,22286,22352,22394 nsv442796 22 37619755 37621404 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" esv33348 22 37631002 37631068 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98926 S 51 0 1 "" 21606 nsv3626 22 37636555 37645775 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2374 S 9 0 1 "" NA18555 nsv9906 22 37653563 37665466 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28061 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18502 nsv433181 22 37667583 37672278 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463062 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA18956 nsv3627 22 37672585 37721084 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9613,nssv11055,nssv10325 M 9 0 3 "" NA15510,NA18507,NA18956 nsv198 22 37674807 37721084 CNV Loss Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv198 S 1 0 1 "" NA15510 nsv9907 22 37683063 37712497 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22625,nssv26608,nssv25973,nssv23271,nssv26104 M 31 0 5 Samples from several populations that are part of the HapMap project. "" NA10839,NA10847,NA18537,NA18572,NA19007 esv33846 22 37683551 37716432 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101582,essv98661,essv97600,essv101114,essv93961,essv100709,essv96808,essv101006,essv95142,essv98313,essv94780,essv94054,essv101281,essv96893,essv97875,essv95585,essv93044,essv95256,essv97385,essv101734,essv95846,essv94609,essv99034,essv92710,essv93752,essv96238,essv96643,essv97277,essv98632,essv95981,essv93363,essv94878,essv92507,essv96575,essv99249,essv97775,essv100253,essv100536,essv100323,essv98372,essv96255,essv94229 M 51 41 1 "" 21603,21606,21616,21618,21634,21656,21659,21693,21721,21772,21791,21802,21805,21817,21837,21841,21863,21872,21879,21909,21911,21932,21938,21944,21972,22007,22011,22075,22085,22127,22170,22231,22233,22261,22275,22278,22286,22298,22300,22352,22371,22394 nsv442797 22 37688119 37699807 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv438346 22 37696927 37706326 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470964,nssv470966,nssv470965,nssv470961 M 269 0 4 Samples from several populations that are part of the HapMap project. "" NA10839,NA12006,NA12864,NA12873 nsv482077 22 37702905 37713283 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558438 S 1 1 0 "" KB1 nsv9908 22 37711022 37716431 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26621 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18537 nsv834196 22 37717069 37935504 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1456134 S 95 0 1 "" nsv522083 22 37759407 37770054 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694857 S 2026 0 1 "" nsv510807 22 37795909 37867884 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619023 S 4 0 1 "" NA10860 nsv834197 22 37797799 37935504 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1456135 S 95 1 0 "" nsv519600 22 37895934 37910597 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696944 S 2026 0 1 "" nsv525409 22 37908937 37910597 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701533 S 2026 0 1 "" nsv834198 22 37943253 38130323 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1456136 S 95 0 1 "" nsv191164 22 37990363 37990363 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv209742 M 24 "" nsv834199 22 38044894 38251848 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1456137,nssv1456138 M 95 0 2 "" dgv259n21 22 38046977 38047386 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv521312,nsv527010 M 2026 0 2 "" nsv817996 22 38083041 38117566 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415879 S 112 1 0 "" NA11992 nsv3628 22 38155603 38189075 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7748 S 9 1 0 "" NA12156 nsv3629 22 38224572 38255088 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6985 S 9 1 0 "" NA12156 nsv834200 22 38295090 38457498 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1456139,nssv1456140,nssv1456143,nssv1456142,nssv1456141 M 95 0 5 "" nsv510808 22 38593731 38678456 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619024 S 4 0 1 "" NA10860 nsv834201 22 38644045 38852314 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1456144 S 95 1 0 "" nsv191489 22 38773205 38778041 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv210067 M 24 "" nsv3630 22 38897254 38941987 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7749 S 9 0 1 "" NA12156 nsv834202 22 38900266 39105745 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1456145,nssv1456146 M 95 0 2 "" nsv459886 22 39211244 39320867 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536547 S 1557 0 1 "" 1780862306_A nsv3634 22 39253839 39277704 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3085 S 9 1 0 "" NA18555 nsv834205 22 39313923 39497946 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1456148,nssv1456147 M 95 1 1 "" nsv523335 22 39413372 39428113 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699081 S 2026 0 1 "" nsv834206 22 39417226 39559385 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1456149 S 95 1 0 "" nsv3635 22 39630458 39634480 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4588 S 9 1 0 "" NA12878 nsv524585 22 39714009 40514809 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700543 S 2026 0 1 "" nsv3636 22 39842883 39876270 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7750 S 9 1 0 "" NA12156 nsv459888 22 39952043 40175000 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536548 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00143 nsv817997 22 39964797 40087370 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415722 S 112 1 0 "" NA12248 nsv516925 22 39973002 40306457 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv682237,nssv694978,nssv680090,nssv683652,nssv682330,nssv655008,nssv705813,nssv674538 M 2026 0 8 "" nsv3637 22 39977152 40021391 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2375 S 9 0 1 "" NA18555 nsv834207 22 40003154 40184294 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1456151,nssv1456152,nssv1456150 M 95 0 3 "" nsv3638 22 40005749 40030192 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4589,nssv7751 M 9 2 0 "" NA12156,NA12878 nsv508734 22 40017884 40017884 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621152 S 4 1 0 "" NA15510 nsv507937 22 40019368 40025368 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621984 S 4 1 0 "" NA10860 nsv834208 22 40084116 40274532 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1456154,nssv1456155,nssv1456153,nssv1456157,nssv1456158,nssv1456156 M 95 0 6 "" nsv834209 22 40284020 40466560 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1456159 S 95 0 1 "" nsv3639 22 40292313 40323375 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6986 S 9 1 0 "" NA12156 dgv110n6 22 40464779 40465168 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv191380,nsv191513 M 24 "" nsv3640 22 40491402 40526708 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1644 S 9 1 0 "" NA19240 nsv191436 22 40555736 40555736 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv210014 M 24 "" nsv508736 22 40609970 40682681 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623849 S 4 1 0 "" NA18994 nsv508737 22 40772511 40854840 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619880,nssv623851 M 4 2 0 "" NA10860,NA18994 nsv834210 22 40777833 40929604 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1456160 S 95 0 1 "" nsv3641 22 40819970 40866795 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9376,nssv2376 M 9 0 2 "" NA18517,NA18555 nsv3642 22 40836001 40848796 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9872,nssv2377 M 9 2 0 "" NA18507,NA18555 esv2750689 22 40839064 40843093 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93771 S 51 0 1 "" 21972 esv33893 22 40847120 40862726 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93878,essv93111,essv97404,essv97174,essv93414,essv92634,essv97670,essv97737,essv96372 M 51 3 5 "" 21634,21863,21879,22075,22170,22233,22278,22371 nsv3643 22 40854976 40918078 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2380,nssv10326,nssv10327,nssv10328,nssv2378,nssv4590 M 9 3 0 "" NA12878,NA18555,NA18956 nsv834211 22 40929615 41106505 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1456161 S 95 0 1 "" nsv517421 22 41015794 41019646 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv651970,nssv681062,nssv678623,nssv668156 M 2026 0 4 "" nsv525176 22 41018718 41020503 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701252 S 2026 0 1 "" dgv1407e1 22 41091699 41407804 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv10034,essv1863,essv14893,essv11825,essv7385,essv2515,essv3033,essv5377,essv16726,essv4487,essv11590,essv9340,esv576,essv13872,essv18178,essv9120,essv15298,essv9803,essv9707,essv2351,essv22156,essv11675,essv9023,essv16485,essv22185 M 271 0 0 "" NA10857,NA12044,NA12057,NA18521,NA18522,NA18552,NA18563,NA18623,NA18853,NA18854,NA18860,NA18862,NA18863,NA18913,NA18940,NA18976,NA18981,NA19003,NA19099,NA19132,NA19142,NA19154,NA19173,NA19210 nsv817998 22 41112814 41152257 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415723 S 112 1 0 "" NA12248 nsv9909 22 41144977 41153309 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25640 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18552 essv4940 22 41160225 41364932 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18537 nsv9910 22 41166629 41169518 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28162 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18860 esv32632 22 41195595 41294991 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98931,essv94717,essv101370,essv94471,essv93036,essv92958,essv93635,essv99585,essv94984,essv99187,essv100155,essv100509,essv98351,essv94168 M 51 14 0 "" 21606,21791,21805,21808,21863,21939,21972,22217,22231,22275,22286,22298,22352,22394 nsv522520 22 41195613 41196584 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705890 S 2026 0 1 "" nsv9911 22 41198644 41204011 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28164 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18860 nsv9912 22 41207835 41306071 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26041,nssv27868,nssv26042,nssv28064,nssv28168,nssv26459,nssv27990,nssv25471,nssv25761,nssv26634,nssv28166,nssv22655,nssv27954,nssv26209,nssv26123,nssv26647,nssv26323,nssv25416 M 31 14 1 Samples from several populations that are part of the HapMap project. "" NA10847,NA10863,NA11830,NA18502,NA18517,NA18537,NA18563,NA18564,NA18853,NA18860,NA18972,NA18980,NA19007,NA19132,NA19173 essv20414 22 41225348 41407804 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA10830 nsv442798 22 41229104 41271378 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv482078 22 41233073 41240306 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558439 S 1 1 0 "" KB1 nsv524028 22 41312615 41352322 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699891 S 2026 0 1 "" dgv260n21 22 41348478 41352322 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv519724,nsv518813 M 2026 0 2 "" nsv520597 22 41386092 41391029 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697511 S 2026 0 1 "" nsv191539 22 41423153 41423520 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv210117 M 24 "" nsv520472 22 41467446 41481822 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697441 S 2026 0 1 "" nsv508738 22 41560163 41638500 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623852,nssv619881 M 4 2 0 "" NA10860,NA18994 nsv834212 22 41617125 41671699 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1456162,nssv1456163 M 95 1 1 "" esv33930 22 41652141 41653135 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97345,essv94854 M 51 0 2 "" 21879,22231 nsv834213 22 41655994 41814685 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1456164 S 95 0 1 "" nsv3645 22 41750764 41783296 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6987 S 9 1 0 "" NA12156 nsv834214 22 41758435 41938432 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1456165 S 95 1 0 "" nsv459889 22 41790027 41842822 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536549 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00025 esv33816 22 41834262 42046626 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100846,essv95147,essv101345,essv97815,essv95361,essv98942,essv96721,essv93447,essv95030,essv97693,essv94238 M 51 11 0 "" 21656,21721,21805,21837,21872,21938,22011,22128,22231,22278,22394 nsv459890 22 41872653 41903820 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536550 S 1557 1 0 "" NINDS_101 nsv520927 22 41874647 42028489 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv691876,nssv677817,nssv682706,nssv683364,nssv703585,nssv703654 M 2026 0 6 "" nsv834216 22 41905408 42104285 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1456166 S 95 0 1 "" nsv191393 22 41923865 41923865 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv209971 M 24 "" nsv459891 22 41994884 42058764 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536551 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00638 nsv525270 22 42094369 42104365 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701370 S 2026 1 0 "" nsv520907 22 42100578 42104365 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv677323,nssv681336 M 2026 2 0 "" nsv508739 22 42100747 42174397 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621153 S 4 1 0 "" NA15510 nsv524935 22 42104365 42105525 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700949 S 2026 0 1 "" nsv459892 22 42183975 42311042 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536552 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00913 nsv3646 22 42267900 42313373 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6988 S 9 0 1 "" NA12156 nsv191450 22 42310062 42310111 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv210028 M 24 "" nsv459893 22 42337114 42439243 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536553 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00913 nsv834217 22 42466073 42640963 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1456167,nssv1456168 M 95 2 0 "" nsv834218 22 42521693 42702796 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1456169 S 95 0 1 "" nsv528729 22 42544473 42544617 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705385 S 2026 0 1 "" nsv3647 22 42547701 42592519 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7752 S 9 0 1 "" NA12156 nsv191452 22 42555060 42555395 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv210030 M 24 "" nsv834219 22 42574777 42733658 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1456170 S 95 1 0 "" nsv459894 22 42620951 42627238 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536554 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00027 nsv528458 22 42647871 42667017 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705060 S 2026 1 0 "" nsv459895 22 42669677 42819367 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536555 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00913 nsv510517 22 42690955 42696955 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624260 S 4 0 1 "" NA18994 dgv1408e1 22 42695340 42716298 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv12039,esv1314 M 271 0 0 "" NA19116 nsv9914 22 42705739 42709840 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28170 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18860 nsv510809 22 42832903 42877872 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620173 S 4 0 1 "" NA15510 nsv508740 22 42877872 42929820 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619882 S 4 1 0 "" NA10860 nsv510518 22 42902685 42908685 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624261 S 4 0 1 "" NA18994 nsv9915 22 42924410 42963989 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28767 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19221 dgv261n21 22 42935951 42942765 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv524798,nsv521628 M 2026 0 2 "" nsv459897 22 42935951 42952969 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536557 S 1557 0 1 "" 1782681076_A nsv438347 22 42963602 42977787 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470967 S 269 0 1 Samples from several populations that are part of the HapMap project. "" NA18572 dgv1409e1 22 42968722 43026202 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv17535,essv11642,essv24933,essv10809,esv384,essv24381 M 271 0 0 "" NA06994,NA12707,NA12762,NA18523,NA19154 nsv519623 22 42996920 43000988 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696956 S 2026 0 1 "" essv18180 22 43007198 43026202 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12057 nsv518737 22 43058943 43060943 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696186 S 2026 0 1 "" dgv262n21 22 43092155 43095438 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv521348,nsv517953 M 2026 0 2 "" nsv526804 22 43093177 43095438 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703158 S 2026 0 1 "" nsv3648 22 43133852 43178584 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7753 S 9 0 1 "" NA12156 nsv459899 22 43148614 43159207 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536558 S 1557 0 1 "" NINDS_50 nsv3649 22 43179449 43205079 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7754 S 9 1 0 "" NA12156 nsv522692 22 43251238 43252129 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv706102 S 2026 0 1 "" nsv515625 22 43251632 43252129 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv660337,nssv690406,nssv664146,nssv671780,nssv679436 M 2026 0 5 "" nsv523770 22 43267058 43268634 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699592 S 2026 0 1 "" dgv1410e1 22 43347341 43531066 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv415,essv16228,essv8450,essv15342,essv8225,essv11793 M 271 0 0 "" NA18504,NA18516,NA18862,NA19116,NA19161 nsv3650 22 43366670 43400291 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7756 S 9 1 0 "" NA12156 nsv817999 22 43414580 43453877 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415724 S 112 1 0 "" NA12248 nsv9916 22 43418051 43419973 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26061,nssv27380,nssv23299,nssv23037,nssv26434,nssv27421,nssv26340 M 31 7 0 Samples from several populations that are part of the HapMap project. "" NA11830,NA12155,NA12740,NA12872,NA18504,NA18563,NA18572 nsv9917 22 43422923 43424411 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27430 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18504 essv12753 22 43439702 43531066 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18914 nsv9918 22 43455369 43459493 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25405,nssv28172,nssv27439,nssv26786,nssv27960,nssv27875,nssv28768,nssv26660 M 31 0 8 Samples from several populations that are part of the HapMap project. "" NA18504,NA18537,NA18860,NA18972,NA18975,NA19132,NA19144,NA19221 esv33671 22 43456506 43467991 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101529,essv100566 M 51 2 0 "" 21603,22298 nsv459901 22 43496508 43578994 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536559 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00629 nsv459902 22 43539724 43578994 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536560 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00160 nsv9919 22 43597602 43888489 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27882,nssv25430,nssv27966,nssv24743,nssv26080,nssv26142 M 31 1 5 Samples from several populations that are part of the HapMap project. "" NA18563,NA18942,NA18972,NA18975,NA19007,NA19132 nsv191258 22 43642444 43642444 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv209836 M 24 "" nsv191598 22 43661308 43661308 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv210176 M 24 "" nsv834220 22 43835143 43986931 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1456171 S 95 0 1 "" dgv1411e1 22 43894761 44245703 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1307,essv1515,esv654 M 271 0 0 "" NA18980 nsv9920 22 43911825 43914226 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28067 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18502 nsv9921 22 43964294 44230549 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26228,nssv25783,nssv26797,nssv26673,nssv27447 M 31 1 4 Samples from several populations that are part of the HapMap project. "" NA18504,NA18537,NA18853,NA18980,NA19144 nsv818000 22 43969383 43983385 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415725 S 112 1 0 "" NA12248 esv34218 22 43971362 44232127 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6986562,essv6978213,essv6978214,essv6990210,essv6986563 M 771 1 0 "" NA18980 nsv508741 22 43974927 44055214 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619883 S 4 1 0 "" NA10860 nsv515559 22 43976381 43977701 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv659301,nssv666212,nssv666053,nssv660384,nssv686958,nssv663899,nssv676059,nssv682542,nssv667254 M 2026 0 9 "" nsv515690 22 44079295 44131899 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv672354,nssv703600,nssv669097,nssv678276,nssv678478,nssv665131,nssv669157,nssv667577,nssv685734,nssv682707,nssv678991,nssv690015,nssv692785,nssv664433,nssv656922,nssv669406,nssv654675,nssv675704,nssv661174 M 2026 13 6 "" nsv834221 22 44100326 44294728 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1456172 S 95 0 1 "" nsv3651 22 44120125 44151969 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5932 S 9 1 0 "" NA19129 nsv525550 22 44142252 44199969 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701688 S 2026 0 1 "" nsv527304 22 44248684 44248861 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703723 S 2026 0 1 "" nsv191287 22 44284803 44285045 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv209865 M 24 "" nsv191416 22 44285035 44285253 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv209994 M 24 "" nsv522106 22 44304438 44316647 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694878 S 2026 0 1 "" nsv527062 22 44338631 44344176 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703440 S 2026 0 1 "" dgv73n68 22 44408953 44604526 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH nsv834223,nsv834222 M 95 2 0 "" nsv527209 22 44523462 44541828 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703609 S 2026 0 1 "" nsv525600 22 44572150 44577892 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701743 S 2026 0 1 "" dgv263n21 22 44575541 44578650 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv526737,nsv518308 M 2026 0 2 "" nsv191273 22 44669553 44669672 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv209851 M 24 "" nsv507938 22 44697748 44703748 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620707 S 4 1 0 "" NA15510 nsv459904 22 44795984 44819953 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536561 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01351 nsv516279 22 44795984 44861746 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv670073,nssv672532,nssv667293,nssv681337,nssv678601,nssv674781,nssv689650,nssv682238,nssv683171,nssv691458,nssv654703 M 2026 0 11 "" nsv459905 22 44814558 44861746 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536562 S 1557 0 1 "" 1780862014_A nsv834224 22 44828065 44978166 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1456175,nssv1456176 M 95 0 2 "" nsv191496 22 44893899 44902311 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv210074 M 24 "" dgv1412e1 22 44975462 45018495 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv11870,essv9434,essv6665,essv11989,essv14155,essv22852,essv10243,essv647,essv11105,essv577,essv4552,essv2452,essv24901,essv1148,essv1388,essv12478,essv16548,essv10076,essv12553,essv24369,essv23501,essv13185,essv8223,essv6332,essv9872,essv14591,essv8179,essv23261,essv14517,essv5016,essv22433,essv7614,essv24063,essv5551,essv16153,essv11040,essv10385,essv10528,essv4495,essv12240,essv14347,essv15845,essv21215,essv4380,essv1924,essv6249,essv3181,essv5182,essv24845,esv339,essv2858,essv13938,essv8826,essv10663,essv16313,essv23038,essv17321,essv11418,essv17064,essv15213,essv14081,essv15714,essv9721,essv23179,essv6029,essv12743,essv2355,essv22755,essv6964,essv1446,essv22391,essv4264,essv3718,essv23131,essv2064,essv1487,essv17264,essv8444,essv11747,essv23842,essv10266 M 271 0 0 "" NA06994,NA07000,NA07019,NA07022,NA07029,NA07034,NA10859,NA11830,NA12156,NA12707,NA12760,NA12761,NA12812,NA12875,NA12891,NA18503,NA18504,NA18506,NA18508,NA18516,NA18517,NA18524,NA18529,NA18545,NA18552,NA18571,NA18573,NA18576,NA18582,NA18603,NA18608,NA18609,NA18611,NA18636,NA18854,NA18855,NA18856,NA18857,NA18861,NA18912,NA18913,NA18914,NA18940,NA18944,NA18947,NA18949,NA18953,NA18959,NA18964,NA18975,NA18980,NA18998,NA18999,NA19007,NA19012,NA19093,NA19094,NA19098,NA19099,NA19100,NA19101,NA19102,NA19116,NA19140,NA19143,NA19145,NA19152,NA19172,NA19193,NA19194,NA19202,NA19206,NA19207,NA19208,NA19210,NA19211,NA19221,NA19222,NA19223,NA19240 nsv818001 22 44994731 45005077 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417202 S 112 0 1 "" NA18558 nsv525512 22 45030400 45042919 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701645 S 2026 0 1 "" nsv834225 22 45040000 45227215 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1456177 S 95 0 1 "" nsv524100 22 45072826 45073698 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699975 S 2026 0 1 "" nsv3652 22 45078968 45096361 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5933 S 9 1 0 "" NA19129 nsv459906 22 45127753 45158673 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536563 S 1557 0 1 "" 1782681313_A nsv3653 22 45179685 45205105 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7757 S 9 1 0 "" NA12156 nsv523749 22 45200206 45207042 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699566 S 2026 0 1 "" nsv520515 22 45207042 45209403 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697464 S 2026 0 1 "" nsv818002 22 45207042 45209403 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417957 S 112 0 1 "" NA18853 nsv834227 22 45215944 45460000 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1456179,nssv1456181,nssv1456178,nssv1456184,nssv1456182,nssv1456180,nssv1456183 M 95 0 7 "" nsv522435 22 45226052 45236799 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705791 S 2026 0 1 "" nsv519958 22 45271958 45281797 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697147 S 2026 1 0 "" nsv191309 22 45333291 45333342 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv209887 M 24 "" nsv191318 22 45337858 45337929 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv209896 M 24 "" nsv191421 22 45403645 45403706 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv209999 M 24 "" nsv3654 22 45472116 45492061 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5934 S 9 1 0 "" NA19129 nsv3656 22 45569108 45598600 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2381 S 9 1 0 "" NA18555 nsv525182 22 45588425 45588588 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701260 S 2026 0 1 "" nsv520549 22 45629870 45636063 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697480 S 2026 0 1 "" nsv519607 22 45700979 45788520 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv682496,nssv693192,nssv694076,nssv663377,nssv657053,nssv694991 M 2026 0 6 "" dgv1413e1 22 45709833 45931039 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv10766,essv11097,essv5601,essv24683,esv257,essv19585,essv21419 M 271 0 0 "" NA11829,NA12717,NA12864,NA18523,NA18529,NA19211 nsv834228 22 45716150 45911029 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1456185 S 95 0 1 "" nsv834229 22 45745585 45776345 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1456186 S 95 0 1 "" nsv3657 22 45755686 45790655 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1646 S 9 1 0 "" NA19240 nsv191217 22 45782071 45782071 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv209795 M 24 "" nsv510519 22 45789127 45795127 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622329,nssv621512 M 4 0 2 "" NA10860,NA15510 nsv515802 22 45830440 45893776 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699619,nssv677773,nssv695586,nssv674754,nssv695157,nssv705814,nssv664826,nssv674539,nssv657054 M 2026 0 9 "" nsv459908 22 45841328 45868840 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536565 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01248 nsv191549 22 45878778 45878851 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv210127 M 24 "" nsv191517 22 45878778 45878888 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv210095 M 24 "" nsv3658 22 45885255 45897460 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1647 S 9 1 0 "" NA19240 essv11661 22 45891592 45931039 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19154 nsv191355 22 45892736 45892843 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv209933 M 24 "" nsv191411 22 45928060 45928575 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv209989 M 24 "" nsv191410 22 45928924 45928924 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv209988 M 24 "" nsv191476 22 45977097 45977168 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv210054 M 24 "" dgv264n21 22 45991726 46008137 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv522864,nsv526738 M 2026 0 2 "" nsv526695 22 46005555 46006186 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703032 S 2026 0 1 "" dgv580n27 22 46031334 46069069 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv459910,nsv459911 M 1557 2 0 "" HGDP00623,HGDP00650 nsv191314 22 46061267 46061267 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv209892 M 24 "" nsv191209 22 46086908 46086908 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv209787 M 24 "" nsv3659 22 46096052 46131148 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1648 S 9 1 0 "" NA19240 nsv528726 22 46467256 46469716 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705381 S 2026 0 1 "" nsv519733 22 46542138 46556759 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv657995,nssv659202 M 2026 2 0 "" nsv834230 22 46591618 46835401 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1456188,nssv1456187,nssv1456191,nssv1456194,nssv1456193,nssv1456190,nssv1456192,nssv1456195,nssv1456201,nssv1456189,nssv1456197,nssv1456196,nssv1456200,nssv1456199,nssv1456198,nssv1456204,nssv1456203,nssv1456202 M 95 3 15 "" nsv191196 22 46632563 46632612 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv209774 M 24 "" dgv1414e1 22 46758244 46775212 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv959,essv13396 M 271 0 0 "" NA18872 nsv518505 22 46777659 46798948 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695946 S 2026 1 0 "" nsv521179 22 46803904 46813232 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697830 S 2026 0 1 "" nsv834231 22 46835402 47006506 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1456205 S 95 1 0 "" dgv1415e1 22 46845829 46847731 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv579,essv22324 M 271 0 0 "" NA06985,NA18998 dgv1416e1 22 46845829 46850201 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv6576,essv8823,essv1510,essv20791,essv21073,essv24940,essv5545,essv12586,essv11727,essv8201,essv17539,essv18242,essv16984,essv7170,essv9004,essv23120,essv15747,essv16305,essv11126,essv10675,essv19494,essv6910,essv22746,esv148,essv23045,essv15886,essv16330,essv18073,essv22440,essv9797,essv8446,essv9744,essv15539,essv17915,essv14570,essv22378,essv18843,essv20590,essv10154,essv21435,essv10580,essv15988,essv19697,essv10737,essv23824 M 271 0 0 "" NA06991,NA06994,NA07019,NA07056,NA12003,NA12057,NA12145,NA12146,NA12264,NA12717,NA12751,NA12761,NA12762,NA12763,NA12812,NA12864,NA12875,NA12891,NA18501,NA18505,NA18508,NA18516,NA18523,NA18529,NA18547,NA18605,NA18621,NA18855,NA18863,NA18913,NA18980,NA19098,NA19116,NA19130,NA19131,NA19132,NA19144,NA19154,NA19161,NA19193,NA19202,NA19211,NA19223,NA19240 dgv1417e1 22 46847631 46850201 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv12249,essv18983 M 271 0 0 "" NA12005,NA19101 nsv191166 22 46886645 46887132 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv209744 M 24 "" nsv191177 22 46886849 46887120 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv209755 M 24 "" nsv191344 22 46965730 46966047 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv209922 M 24 "" nsv818003 22 47070182 47096751 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415726 S 112 1 0 "" NA12248 nsv834232 22 47075148 47269441 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1456206 S 95 0 1 "" dgv1418e1 22 47095130 47136752 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv690,essv15861,essv12193,essv15280,essv17475,essv13772,esv168,essv23515 M 271 0 0 "" NA07034,NA12762,NA18975,NA19094,NA19101,NA19153,NA19223 nsv508742 22 47102968 47178178 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621154 S 4 1 0 "" NA15510 nsv459913 22 47123963 47173082 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536568 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00947 nsv818004 22 47136755 47140542 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417313 S 112 0 1 "" NA18608 nsv191307 22 47146058 47146058 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv209885 M 24 "" nsv818005 22 47216293 47217529 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416522 S 112 0 1 "" NA18516 nsv524377 22 47395594 47398137 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700292 S 2026 0 1 "" nsv191479 22 47396028 47396625 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv210057 M 24 "" nsv3660 22 47402868 47436397 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7758 S 9 1 0 "" NA12156 nsv459914 22 47418194 47436543 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536569 S 1557 0 1 "" NINDS_182 nsv459915 22 47452055 47472166 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536570 S 1557 0 1 "" 1780862303_A nsv521221 22 47462572 47462690 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697852 S 2026 0 1 "" dgv1419e1 22 47465793 47475686 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv20275,essv5531,essv549,essv18164,essv11732,essv24941,esv369,essv7200,essv19580,essv17524,essv3339,essv10768,essv6902,essv17935,essv18308 M 271 0 0 "" NA06994,NA10846,NA12003,NA12057,NA12144,NA12762,NA12864,NA18523,NA18529,NA18547,NA18605,NA18945,NA18998,NA19154 nsv516046 22 47516873 47522567 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv671233,nssv683895,nssv689677,nssv673313,nssv698873,nssv679051,nssv665875 M 2026 0 7 "" nsv519239 22 47524831 47525476 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696732 S 2026 0 1 "" nsv520623 22 47530223 47534895 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697523 S 2026 0 1 "" nsv834233 22 47634542 47836221 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1456207 S 95 1 0 "" nsv527814 22 47672628 47726455 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704308 S 2026 1 0 "" nsv510520 22 47677215 47683215 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618467 S 4 0 1 "" CHM nsv459917 22 47679614 47724910 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536571 S 1557 1 0 "" 1787431197_A nsv508743 22 47680215 47712881 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621155,nssv619884,nssv623853 M 4 3 0 "" NA10860,NA15510,NA18994 nsv3661 22 47693073 47724947 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6989 S 9 1 0 "" NA12156 nsv508744 22 47717689 47750964 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619885 S 4 1 0 "" NA10860 nsv3662 22 47772024 47787485 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2382 S 9 1 0 "" NA18555 dgv1420e1 22 47780805 47808278 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv14009,esv1106 M 271 0 0 "" NA19222 nsv519806 22 47792380 47812437 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697061 S 2026 0 1 "" nsv524421 22 47805394 47806103 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700347 S 2026 0 1 "" nsv524422 22 47863082 47871655 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700348 S 2026 0 1 "" nsv191537 22 47881197 47881197 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv210115 M 24 "" nsv524202 22 47912304 47912943 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700088 S 2026 0 1 "" nsv834234 22 47940417 48114840 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1456208,nssv1456209 M 95 0 2 "" nsv438349 22 47967172 47968747 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470969,nssv470968 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA18529,NA18944 nsv526158 22 47981998 47988846 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702417 S 2026 0 1 "" nsv507939 22 47990584 47996584 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617959,nssv620708,nssv621985,nssv623325 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv523697 22 48014497 48017826 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699504 S 2026 0 1 "" nsv524423 22 48016870 48025484 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700349 S 2026 0 1 "" nsv442508 22 48030920 48033304 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv517626 22 48033053 48033305 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv662052,nssv661720,nssv656402,nssv689182,nssv655561,nssv654573,nssv652582,nssv664738 M 2026 0 8 "" nsv527760 22 48033053 48043786 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704247 S 2026 0 1 "" nsv3663 22 48069330 48103911 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1649 S 9 1 0 "" NA19240 nsv526598 22 48082125 48089538 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702917 S 2026 0 1 "" nsv191302 22 48082861 48082861 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv209880 M 24 "" nsv459921 22 48127461 48142276 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536573 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00653 nsv459922 22 48137493 48155608 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536574 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00943 nsv519884 22 48137493 48181894 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv691116,nssv697075,nssv659302,nssv673970 M 2026 0 4 "" nsv3664 22 48151135 48182474 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10329 S 9 1 0 "" NA18956 nsv510810 22 48157047 48227282 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620175 S 4 0 1 "" NA15510 dgv581n27 22 48161931 48221110 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv459924,nsv459923 M 1557 0 2 "" 1798860594_A,HGDP00519 nsv191531 22 48184135 48184345 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv210109 M 24 "" dgv1421e1 22 48248831 48252981 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv96,essv7024 M 271 0 0 "" NA18612 nsv834235 22 48373497 48531200 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1456211,nssv1456210 M 95 0 2 "" nsv3665 22 48390435 48423396 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6990 S 9 1 0 "" NA12156 nsv3667 22 48495143 48528627 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5936 S 9 1 0 "" NA19129 dgv265n21 22 48516053 48562071 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv519083,nsv522824 M 2026 0 2 "" nsv191151 22 48571135 48571230 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv209729 M 24 "" nsv191243 22 48571282 48571377 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv209821 M 24 "" nsv191548 22 48616860 48616928 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv210126 M 24 "" nsv525700 22 48638157 48772973 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701860 S 2026 0 1 "" dgv582n27 22 48765688 48898299 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv459926,nsv459927,nsv459925 M 1557 3 0 "" HGDP00573,HGDP00581,HGDP00590 nsv516273 22 48766953 48772973 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv679437,nssv659273,nssv667255,nssv692083,nssv667469,nssv680822 M 2026 0 6 "" nsv191413 22 48798445 48798445 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv209991 M 24 "" nsv191459 22 48801584 48801634 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv210037 M 24 "" nsv191402 22 48821945 48822243 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv209980 M 24 "" nsv834236 22 48835277 48884279 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1456213,nssv1456212 M 95 0 2 "" esv33533 22 48857474 48858002 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98875,essv99754 M 51 0 2 "" 21606,22086 nsv191327 22 48930557 48930614 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv209905 M 24 "" nsv191216 22 49026683 49026683 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv209794 M 24 "" nsv3668 22 49120366 49165456 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7759 S 9 0 1 "" NA12156 nsv191443 22 49126121 49126191 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv210021 M 24 "" nsv834238 22 49131263 49285538 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1456214,nssv1456215 M 95 0 2 "" nsv3669 22 49204084 49237988 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7760 S 9 1 0 "" NA12156 nsv834239 22 49213890 49358787 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1456222,nssv1456216,nssv1456219,nssv1456218,nssv1456217,nssv1456221,nssv1456220 M 95 0 7 "" dgv1422e1 22 49219663 49307552 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv69,essv6981 M 271 0 0 "" NA18612 nsv482079 22 49231524 49236257 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558440 S 1 1 0 "" KB1 esv33185 22 49294763 49303950 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100861 S 51 0 1 "" 21656 nsv519694 22 49354560 49377492 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701036,nssv657594,nssv675115 M 2026 1 2 "" nsv834240 22 49357154 49461978 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1456225,nssv1456224,nssv1456223 M 95 0 3 "" nsv818007 22 49358704 49370904 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418303,nssv1418314 M 112 2 0 "" NA06985,NA06991 nsv191561 22 49366718 49366944 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv210139 M 24 "" nsv459932 22 49379357 49468234 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536580 S 1557 0 1 "" 1780862347_A essv9884 22 49392382 49434548 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19145 dgv1423e1 22 49392382 49495206 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv7788,essv4127,essv1227,essv20384,essv6272,esv452,essv4656,essv7713,essv17074 M 271 0 0 "" NA10830,NA18555,NA18558,NA18594,NA18633,NA18636,NA18995,NA19172 nsv459933 22 49395700 49455808 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536581 S 1557 0 1 "" 1780862197_A nsv518350 22 49423662 49437159 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695778 S 2026 0 1 "" nsv191405 22 49444582 49444663 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv209983 M 24 "" essv13762 22 49451753 49495206 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19153 nsv9922 22 49457100 49459139 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27436 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19240 dgv583n27 3 38411 101158 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv460292,nsv460291,nsv460290 M 1557 3 0 "" 1780854439_A,1780862577_A,1798860567_A nsv516303 3 38411 108412 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv667429,nssv669536,nssv669359 M 2026 3 0 "" dgv584n27 3 38411 160281 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv460296,nsv460300,nsv460293 M 1557 0 3 "" HGDP00096,HGDP00183,HGDP00208 nsv526340 3 38411 2321860 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702632 S 2026 0 1 "" esv2752007 3 41866 192644 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6983397,essv6983398,essv6983399,essv6986424 M 771 1 0 "" BEC_647 essv21464 3 46156 218278 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12717 dgv1424e1 3 46156 343409 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv16397,essv5528,essv10030,essv21860,essv16980,essv21218,essv22884,essv20096,essv14762,essv23061,essv17578,essv18245,essv19256,essv10324 M 271 0 0 "" NA07048,NA10838,NA10846,NA11830,NA11839,NA12760,NA12762,NA12812,NA18506,NA18529,NA19099,NA19139,NA19144,NA19159 dgv1425e1 3 46156 518322 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv5292,essv19975 M 271 0 0 "" NA12813,NA18624 dgv1426e1 3 46156 773503 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv21030,esv612 M 271 0 0 "" NA06991 esv2752009 3 48603 102933 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6983483,essv6983484 M 771 1 0 "" BEC_660 dgv585n27 3 57010 102677 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv460299,nsv460297,nsv460298 M 1557 3 0 "" 1780862160_A,HGDP00900,NINDS_29 essv18900 3 61204 102933 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12717 nsv524041 3 70597 146308 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699905 S 2026 1 0 "" nsv460301 3 70973 149514 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536902 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00909 dgv586n27 3 89133 186745 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv460303,nsv460302 M 1557 2 0 "" HGDP00459,HGDP01090 nsv10236 3 148712 157779 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28754,nssv29205,nssv11918,nssv12563,nssv29106,nssv11817,nssv28755,nssv29031,nssv12533,nssv29188,nssv11811,nssv28904,nssv28141 M 31 2 11 Samples from several populations that are part of the HapMap project. "" NA12155,NA12740,NA12872,NA18563,NA18564,NA18860,NA18972,NA18975,NA18980,NA19007,NA19132,NA19240 nsv460304 3 160281 228952 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536905 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00140 nsv521040 3 163865 196081 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv680470,nssv691425,nssv701024 M 2026 1 2 "" esv2751984 3 184745 270654 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6985784,essv6985785,essv6985786,essv6988985 M 771 1 0 "" SPC_47 esv32868 3 195478 212932 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93795,essv94339,essv95330,essv95892,essv92922,essv93619,essv96171,essv97159,essv93240,essv99684,essv94848,essv98096,essv99218,essv100369,essv99500,essv96352,essv94290 M 51 0 17 "" 21634,21808,21872,21911,21939,21972,22007,22075,22170,22217,22231,22259,22275,22300,22335,22371,22394 essv6865 3 196081 211759 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18558 nsv3670 3 197480 223778 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4593,nssv10332,nssv2385 M 9 0 3 "" NA12878,NA18555,NA18956 nsv508206 3 199707 219965 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617472,nssv618709 M 4 0 2 "" CHM,NA10860 nsv10237 3 202918 209779 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv29011,nssv29218,nssv11893,nssv29070,nssv11712,nssv11609,nssv28519,nssv28637,nssv29061,nssv11841,nssv28191,nssv28611,nssv11948,nssv28704,nssv28804,nssv28655 M 31 15 1 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10863,NA11830,NA12155,NA12872,NA18502,NA18504,NA18537,NA18853,NA18860,NA18975,NA19144,NA19173,NA19240 nsv237676 3 203772 209404 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv256254 M 24 "" nsv442850 3 205022 207800 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv266n21 3 216572 219949 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv526215,nsv519754 M 2026 0 5 "" dgv267n21 3 244035 245521 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv520115,nsv526216 M 2026 0 2 "" nsv460305 3 245521 292145 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536906 S 1557 0 1 "" NINDS_208 nsv834589 3 252188 412186 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442653 S 95 1 0 "" nsv460307 3 262419 286851 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536908 S 1557 0 1 "" 1780862576_A nsv10238 3 288509 301846 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11954 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18517 nsv818121 3 289538 300410 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416428,nssv1416429 M 112 2 0 "" NA18515,NA18517 nsv433357 3 291417 301099 CNV Gain Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463238 S 9 1 0 Samples from several populations that are part of the HapMap project. "" NA18517 nsv3671 3 296589 319043 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9378 S 9 1 0 "" NA18517 nsv3672 3 306254 351000 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7763 S 9 0 1 "" NA12156 dgv1427e1 3 458675 773503 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv15335,essv17562 M 271 0 0 "" NA12762,NA18862 nsv469792 3 458723 609438 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649813 M 265 0 0 Samples from several populations that are part of the HapMap project. "" nsv834590 3 501216 678999 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442654,nssv1442655 M 95 2 0 "" nsv523139 3 529312 540961 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698846 S 2026 0 1 "" dgv268n21 3 531800 1325458 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv527054,nsv525119 M 2026 2 0 "" nsv10240 3 586921 638701 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11984,nssv12593,nssv27922,nssv28241,nssv11978,nssv28744,nssv11847 M 31 0 7 Samples from several populations that are part of the HapMap project. "" NA12155,NA12802,NA12872,NA18517,NA18537,NA18972,NA19132 esv32712 3 590419 635537 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101019,essv93679,essv98381 M 51 0 3 "" 21693,21972,22352 nsv236720 3 632412 633403 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255298 M 24 "" nsv834592 3 636172 795419 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442656 S 95 1 0 "" dgv111n6 3 636711 637032 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv237988,nsv236700 M 24 "" nsv524339 3 682654 691885 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700246 S 2026 1 0 "" nsv460310 3 685880 775548 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536909 S 1557 0 1 "" 1782681236_A nsv527267 3 730370 1118424 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703675 S 2026 1 0 "" nsv527325 3 775548 812481 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703750 S 2026 0 1 "" nsv524653 3 784720 784878 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700620 S 2026 0 1 "" nsv517343 3 823898 1403635 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv672083,nssv695189,nssv702191,nssv687451,nssv671856,nssv672931,nssv692282,nssv693169,nssv677924,nssv705320,nssv664739,nssv675641,nssv662170,nssv684338,nssv655184,nssv683896,nssv704994,nssv662329,nssv680517,nssv675797,nssv676753,nssv657747,nssv660938,nssv691737,nssv675545,nssv651784,nssv693695,nssv680980,nssv653211,nssv674906,nssv678732,nssv690407,nssv674568,nssv697376 M 2026 3 31 "" nsv508207 3 894772 961997 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622451 S 4 0 1 "" NA18994 esv33501 3 915435 1251928 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100180 S 51 1 0 "" 22286 esv2422404 3 915869 1423517 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161522 S 181 1 0 "" ND03627 esv2422485 3 959214 1628443 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161381 S 181 1 0 "" ND05154 nsv437317 3 1005428 1015539 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467198 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18500 nsv10241 3 1006948 1042685 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12480 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19221 nsv441807 3 1009997 1014189 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv460311 3 1118424 1725536 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536910 S 1557 1 0 "" NINDS_260 nsv460312 3 1122201 2183832 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536911 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01374 nsv460313 3 1129559 1510741 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536912 S 1557 1 0 "" NINDS_147 nsv834593 3 1142433 1310573 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442657 S 95 0 1 "" nsv527266 3 1145794 1448261 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703674 S 2026 1 0 "" essv22021 3 1222123 1302426 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12815 esv675 3 1222123 1563919 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent + Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 "" esv34599 3 1242186 1306975 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6979024,essv6979025,essv6979026,essv6986775,essv6986774 M 771 1 0 "" NA12815 essv21142 3 1244095 1420317 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12815 nsv834594 3 1244128 1412999 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442658 S 95 0 1 "" nsv10242 3 1282730 1284641 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12008,nssv28792,nssv28834 M 31 0 3 Samples from several populations that are part of the HapMap project. "" NA11830,NA12155,NA18980 nsv10243 3 1317099 1345034 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12510 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19221 nsv237313 3 1317739 1320968 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255891 M 24 "" essv13365 3 1338740 1343476 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19159 essv13232 3 1338740 1346260 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19131 nsv460315 3 1341846 1507531 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536913 S 1557 1 0 "" 1780862443_A nsv834595 3 1379689 1520051 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442659 S 95 0 1 "" essv7266 3 1379689 1563295 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18592 esv34639 3 1450475 1576830 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6979642,essv6979643,essv6979644,essv6986916,essv6986917 M 771 1 0 "" NA18592 essv6437 3 1455555 1563919 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18592 nsv834596 3 1471130 1652484 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442660 S 95 0 1 "" nsv834597 3 1578471 1766562 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442661 S 95 0 1 "" nsv508136 3 1584892 1590892 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622019 S 4 0 1 "" NA10860 nsv523025 3 1597362 1630984 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698705 S 2026 1 0 "" dgv269n21 3 1627741 1729872 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv524081,nsv525907 M 2026 0 2 "" nsv442851 3 1658250 1666567 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv525513 3 1679667 1682513 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701646 S 2026 0 1 "" nsv528553 3 1706173 1791980 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705166 S 2026 1 0 "" nsv460319 3 1706173 1796213 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536915 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01278 nsv527543 3 1706848 1733089 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704004 S 2026 0 1 "" nsv834598 3 1718910 1884368 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442662 S 95 0 1 "" nsv437318 3 1720013 1747270 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467199 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18521 nsv523916 3 1725536 1733089 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699759 S 2026 0 1 "" nsv517393 3 1730876 1731711 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv651948,nssv660976,nssv658503,nssv663546,nssv677324,nssv690242,nssv669713,nssv651889,nssv692946 M 2026 9 0 "" nsv10244 3 1752567 1797300 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11923,nssv12014,nssv28789,nssv28822,nssv11877,nssv29136,nssv28438,nssv29100,nssv29091,nssv28695,nssv11871,nssv11639,nssv12623,nssv29248,nssv29235,nssv28589,nssv28677,nssv12540,nssv28782,nssv29041,nssv28651,nssv28384,nssv28864,nssv12038,nssv28964,nssv28291,nssv11742,nssv28005,nssv28793 M 31 29 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10847,NA10863,NA11830,NA12155,NA12740,NA12802,NA12872,NA18502,NA18504,NA18517,NA18537,NA18563,NA18564,NA18572,NA18853,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19144,NA19173,NA19221,NA19240 dgv270n21 3 1756739 1764200 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv522215,nsv516196,nsv519985 M 2026 0 42 "" nsv441809 3 1757522 1762585 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv460320 3 1789351 1878200 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536916 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01249 nsv527960 3 1793056 1956567 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704470 S 2026 0 1 "" nsv3673 3 1794246 1827782 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7764 S 9 1 0 "" NA12156 nsv520133 3 1801892 1907464 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697241 S 2026 1 0 "" nsv528999 3 1825547 2103834 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705705 S 2026 1 0 "" nsv460321 3 1825547 2216647 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536917 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00815 nsv834599 3 1841954 2043596 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442664 S 95 0 1 "" esv2751985 3 1855954 1957593 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6984186,essv6989927,essv6989417 M 771 0 1 "" BEC_799 esv2422325 3 1872571 2830211 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161235 S 181 1 0 "" ND04675 nsv3674 3 1880282 1916775 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1651 S 9 0 1 "" NA19240 nsv441810 3 1888098 1900851 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv517127 3 1888371 1900851 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv659578,nssv674690,nssv679282,nssv669305,nssv690018,nssv679087,nssv660629,nssv680091,nssv683086,nssv659838,nssv686602,nssv663900,nssv690454,nssv693502,nssv661207,nssv669159,nssv658679,nssv667006,nssv690455,nssv690940,nssv653828,nssv669456,nssv654644,nssv676327,nssv663487,nssv691118,nssv671236,nssv692809,nssv689290,nssv673683,nssv665539,nssv683626,nssv687453,nssv672740,nssv691917,nssv686768,nssv669755,nssv689071,nssv656548,nssv687031,nssv693414,nssv661281,nssv687298,nssv679646,nssv691877,nssv666134,nssv661231,nssv659225,nssv680938 M 2026 0 49 "" nsv521485 3 1888371 1915922 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698096 S 2026 0 1 "" dgv271n21 3 1900851 1963126 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv525979,nsv520367 M 2026 2 0 "" nsv515587 3 1911242 1915922 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv686108,nssv684054,nssv676116,nssv661304,nssv661328,nssv680575,nssv664008,nssv674313,nssv682543,nssv685001,nssv666520,nssv660596,nssv654326,nssv657421,nssv662770,nssv682887,nssv684031,nssv691028,nssv665132,nssv666158,nssv666947,nssv677278,nssv666856,nssv658826,nssv657282,nssv658884 M 2026 0 26 "" nsv460322 3 1911522 1928413 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536918 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01414 esv2422409 3 1917406 2649253 CNV Deletion Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161470 S 181 0 1 "" ND05461 nsv519935 3 1936623 1956567 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697135 S 2026 0 1 "" nsv834600 3 1995399 2175975 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442665 S 95 0 1 "" esv2751990 3 2009415 2397321 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6984816,essv6984817,essv6984818,essv6988853,essv6987693 M 771 1 0 "" SPC_181 nsv523731 3 2034893 2037298 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699547 S 2026 0 1 "" nsv460323 3 2046931 2494956 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536919 S 1557 1 0 "" 1780862435_A nsv460324 3 2070542 2761502 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536920 S 1557 0 1 "" NINDS_129 esv2422274 3 2117080 3331591 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161250 S 181 1 0 "" ND03627 nsv460325 3 2125400 2950573 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536921 S 1557 1 0 "" NINDS_227 nsv524378 3 2178765 2451848 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700293 S 2026 1 0 "" dgv1428e1 3 2181272 2470417 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv707,essv7276,essv6448 M 271 0 0 "" NA18592 nsv834601 3 2184342 2390404 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442666 S 95 0 1 "" esv2751993 3 2187318 2877880 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6989289,essv6982176,essv6982175 M 771 0 1 "" BEC_40 esv2751994 3 2217441 3195570 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6984454,essv6984455,essv6984456,essv6984453 M 771 1 0 "" BEC_707 esv34352 3 2249216 2476259 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6979645,essv6986918,essv6979646,essv6979647,essv6990391 M 771 1 0 "" NA18592 dgv587n27 3 2284379 2927214 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv460327,nsv460330 M 1557 2 0 "" 1780854080_A,HGDP01396 nsv460329 3 2318040 2332058 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536924 S 1557 1 0 "" NINDS_91 esv2751996 3 2345877 2600279 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6982521,essv6982522,essv6989310 M 771 0 1 "" BEC_462 nsv834603 3 2370114 2538450 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442667 S 95 0 1 "" nsv10245 3 2383730 2385935 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12653 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18972 nsv237257 3 2405929 2405989 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255835 M 24 "" nsv818122 3 2548148 2548531 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417256,nssv1417193 M 112 0 2 "" NA18558,NA18593 nsv236276 3 2608027 2608347 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv254854 M 24 "" nsv525486 3 2611747 2622457 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701615 S 2026 0 1 "" esv2751998 3 2735197 2868696 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6981020,essv6981019,essv6981018,essv6981017 M 771 1 0 "" BEC_337 nsv520139 3 2927214 2930529 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv681022,nssv661110 M 2026 0 2 "" nsv3675 3 3011332 3056144 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7765 S 9 0 1 "" NA12156 nsv515751 3 3027402 3030247 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv664675,nssv690219,nssv677699,nssv690369 M 2026 0 4 "" nsv521796 3 3055509 3167903 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694098 S 2026 0 1 "" nsv518298 3 3095571 3096857 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694223 S 2026 1 0 "" nsv237385 3 3133651 3133719 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255963 M 24 "" nsv834604 3 3163767 3378667 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442668 S 95 1 0 "" nsv3676 3 3194462 3228285 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5939 S 9 1 0 "" NA19129 nsv516940 3 3201378 3206647 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv690347,nssv678305,nssv684601,nssv692691,nssv687091,nssv655067 M 2026 0 6 "" esv2752000 3 3398498 3687240 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6988345,essv6981023,essv6981022,essv6981021 M 771 1 0 "" BEC_337 nsv526651 3 3432052 3642895 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702978 S 2026 1 0 "" nsv527718 3 3490438 3505023 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704199 S 2026 1 0 "" nsv528948 3 3505633 3506472 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705640 S 2026 0 1 "" nsv3678 3 3539068 3580658 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9873 S 9 0 1 "" NA18507 nsv460332 3 3555449 3611664 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536926 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00815 esv2752001 3 3555740 3874791 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6984819,essv6984820,essv6984821,essv6984822,essv6984823 M 771 1 0 "" SPC_181 nsv3679 3 3564180 3596878 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5940 S 9 1 0 "" NA19129 esv33321 3 3599896 3600040 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv92927,essv94231 M 51 2 0 "" 21939,22394 nsv507078 3 3623022 3629022 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622844,nssv617591,nssv620753,nssv621693 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv238048 3 3698308 3698381 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv256626 M 24 "" nsv509812 3 3721034 3727034 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618568,nssv622020,nssv621545 M 4 0 3 "" CHM,NA10860,NA15510 nsv523857 3 3731970 3745669 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699692 S 2026 1 0 "" nsv507079 3 3787799 3793799 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622845,nssv617592,nssv621694,nssv620754 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv236590 3 3817368 3817443 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255168 M 24 "" nsv3680 3 3869881 3903230 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7766 S 9 1 0 "" NA12156 nsv528048 3 3974670 4188033 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704580 S 2026 0 1 "" nsv524715 3 3989660 4031652 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700700 S 2026 0 1 "" nsv519389 3 3995215 4000703 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696828 S 2026 0 1 "" esv2752003 3 3996516 4050936 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6984824,essv6984825,essv6988854 M 771 1 0 "" SPC_181 esv2752004 3 3996516 4180623 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6981720,essv6981721,essv6988006,essv6988005 M 771 0 1 "" BEC_328 nsv508208 3 4028925 4085710 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617473 S 4 0 1 "" CHM dgv588n27 3 4035937 4235317 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv460336,nsv460335 M 1557 0 2 "" HGDP00133,HGDP01179 nsv236220 3 4041925 4044555 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv254798 M 24 "" nsv460337 3 4049033 4140733 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536929 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01333 nsv528756 3 4050733 4085799 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705418 S 2026 0 1 "" nsv437624 3 4053654 4078926 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467505 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA12864 nsv519512 3 4053654 4199731 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696893 S 2026 0 1 "" dgv1429e1 3 4062787 4081495 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1418,essv19809,essv24025 M 271 0 0 "" NA12864,NA12873 dgv589n27 3 4063576 4076356 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv460340,nsv460342,nsv460338,nsv460343,nsv460341 M 1557 0 5 "" 1782681313_A,HGDP01357,NINDS_115,NINDS_223,NINDS_51 nsv438386 3 4063576 4076356 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv471222,nssv471221 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA12864,NA12873 nsv517232 3 4063576 4076356 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv690591,nssv686296,nssv682783,nssv692283,nssv657820,nssv679321,nssv654079 M 2026 0 7 "" esv2752005 3 4063809 4158674 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6981081,essv6981082,essv6981083,essv6987908 M 771 0 1 "" BEC_350 esv2752006 3 4063809 4214850 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6989549,essv6989275,essv6981975,essv6981976 M 771 0 1 "" BEC_51 nsv460344 3 4067922 4111234 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536936 S 1557 0 1 "" 1780854016_A nsv526916 3 4073819 4160026 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703277 S 2026 0 1 "" dgv272n21 3 4097269 4336483 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv516589,nsv522239 M 2026 0 26 "" nsv460345 3 4110452 4140733 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536937 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00279 nsv460346 3 4110452 4214953 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536938 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01319 esv34292 3 4113369 4180623 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6978431,essv6989023 M 771 0 1 "" NA19098 dgv1430e1 3 4113369 4185967 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv13979,essv11389 M 271 0 0 "" NA19098,NA19127 dgv1431e1 3 4113369 4395357 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv4060,esv522 M 271 0 0 "" NA18635 nsv460347 3 4120538 4137607 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536939 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01309 dgv590n27 3 4120538 4156750 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv460348,nsv460349 M 1557 0 2 "" 1780854023_A,1780854328_A dgv591n27 3 4120538 4180623 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv460352,nsv460351 M 1557 0 2 "" HGDP00473,HGDP01090 dgv592n27 3 4137607 4287735 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv460353,nsv460354,nsv460355 M 1557 0 3 "" 1780854417_A,1782681313_A,1798860491_A nsv442852 3 4167639 4172015 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv10246 3 4168584 4179816 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11907 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19132 nsv3681 3 4212331 4257186 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7767 S 9 0 1 "" NA12156 nsv460356 3 4228219 4236304 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536948 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00772 essv7251 3 4241532 4252366 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18635 nsv10247 3 4263741 4265796 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28424 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA10847 nsv518660 3 4317274 4317353 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696110 S 2026 0 1 "" nsv523381 3 4351030 4369361 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699130 S 2026 0 1 "" esv2422450 3 4483871 4631225 CNV Deletion Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161263 S 181 0 1 "" ND05029 nsv834605 3 4525274 4659725 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442669 S 95 1 0 "" nsv518121 3 4560549 4565681 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695537 S 2026 0 1 "" nsv517614 3 4595320 4596315 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv668359,nssv667154,nssv652515 M 2026 0 3 "" nsv520447 3 4620916 4626501 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697425 S 2026 0 1 "" nsv460357 3 4673109 4768520 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536949 S 1557 0 1 "" NINDS_223 dgv593n27 3 4768520 4772041 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv460359,nsv460358 M 1557 0 2 "" 1780862127_A,1780862229_A nsv3682 3 4783471 4810418 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6992 S 9 1 0 "" NA12156 nsv460360 3 4843958 4945333 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536952 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01302 nsv834606 3 4851703 5073932 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442670 S 95 0 1 "" nsv236209 3 4898894 4898894 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv254787 M 24 "" nsv507080 3 4935442 4941442 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621695 S 4 1 0 "" NA10860 nsv517888 3 4966139 4994936 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695296 S 2026 0 1 "" nsv516673 3 4969341 4991106 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv670968,nssv663655,nssv670076 M 2026 3 0 "" nsv438387 3 5073705 5078825 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv471225,nssv471223 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA18961,NA18981 dgv594n27 3 5365651 5417857 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv460363,nsv460362 M 1557 0 2 "" HGDP00901,NINDS_22 dgv273n21 3 5383302 5411345 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv518375,nsv523424 M 2026 0 2 "" nsv460364 3 5383302 5513017 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536956 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00080 nsv516005 3 5395067 5395175 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv665672,nssv677097,nssv668212 M 2026 0 3 "" nsv528350 3 5402290 5427555 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704934 S 2026 0 1 "" nsv460366 3 5556537 5682689 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536957 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00934 dgv274n21 3 5564870 5686897 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv525426,nsv522750 M 2026 2 0 "" nsv517208 3 5572285 5582784 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv671552,nssv674170,nssv682383,nssv660790,nssv688773,nssv686208,nssv651949,nssv655564,nssv686720,nssv680436,nssv683785,nssv670512,nssv661689,nssv683087,nssv680155,nssv677280,nssv676995,nssv667348,nssv654012,nssv666135,nssv673486,nssv694038,nssv686842,nssv659616,nssv685820,nssv676389,nssv670167,nssv660840,nssv670124,nssv656516,nssv677028,nssv655718,nssv690941,nssv668853,nssv693383,nssv673906 M 2026 0 36 "" nsv524379 3 5675132 5916986 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700294 S 2026 1 0 "" nsv437319 3 5697805 5702171 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467200 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18857 nsv834607 3 5744861 5909626 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442671 S 95 1 0 "" nsv460367 3 5771218 6237479 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536958 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01347 nsv460368 3 5844391 6411873 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536959 S 1557 1 0 "" 1780862109_A nsv516727 3 6056827 6075940 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv671061,nssv686229,nssv689268,nssv673314,nssv670487 M 2026 0 5 "" nsv460369 3 6057552 6075940 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536960 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01276 nsv3683 3 6127255 6130808 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3086 S 9 1 0 "" NA18555 dgv1432e1 3 6181901 6211442 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv9302,essv13106 M 271 0 0 "" NA18852,NA18859 dgv1433e1 3 6181901 6224264 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv8505,esv1220,essv13375,essv11355,essv16603 M 271 0 0 "" NA18854,NA18858,NA18860,NA19159 nsv834608 3 6184066 6351755 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442672 S 95 1 0 "" dgv69n17 3 6188788 6220005 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437321,nsv437320 M 60 0 2 "" NA18854,NA18860 nsv10248 3 6191571 6215858 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11901 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18860 nsv818124 3 6194093 6211038 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417839,nssv1416711,nssv1417838 M 112 0 3 "" NA18852,NA18854,NA19159 dgv595n27 3 6194093 6214264 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv460375,nsv460371,nsv460370,nsv460376,nsv460374,nsv460373 M 1557 0 6 "" HGDP00475,HGDP00691,HGDP00926,HGDP00942,HGDP01416,NINDS_16 nsv517033 3 6194093 6215771 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv664784,nssv672321,nssv686111,nssv653706,nssv686878,nssv675548,nssv654292,nssv662931,nssv659637,nssv653648,nssv672932,nssv660791,nssv656575,nssv671154,nssv671782,nssv658625,nssv665480,nssv677132,nssv690161,nssv690917,nssv677535,nssv672631,nssv658127,nssv679203,nssv670050,nssv658642,nssv682299,nssv689586,nssv691918,nssv655088 M 2026 0 30 "" nsv438389 3 6196030 6211038 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv471226,nssv471227 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA18859,NA18860 essv14041 3 6199872 6220005 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18862 nsv442853 3 6200911 6215260 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" esv33230 3 6249524 6294261 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97271 S 51 1 0 "" 22075 nsv528186 3 6297086 6303081 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704742 S 2026 1 0 "" nsv3684 3 6307926 6352801 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2386 S 9 0 1 "" NA18555 nsv524502 3 6401456 6410584 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700444 S 2026 0 1 "" nsv3685 3 6419687 6451309 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4595 S 9 1 0 "" NA12878 nsv834609 3 6475547 6631181 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442673 S 95 1 0 "" nsv10249 3 6492869 6629980 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28341,nssv29071,nssv28735,nssv28478 M 31 0 4 Samples from several populations that are part of the HapMap project. "" NA10839,NA10863,NA12872,NA18572 dgv70n17 3 6624648 6631706 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437668,nsv437646,nsv437635,nsv437657 M 60 0 4 "" NA10831,NA10839,NA10846,NA10863 nsv442854 3 6626128 6628332 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv509813 3 6716406 6722406 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621546,nssv623894 M 4 0 2 "" NA15510,NA18994 nsv441811 3 6744713 6748970 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv518755 3 6894818 6958750 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696203 S 2026 0 1 "" nsv507081 3 6984643 6990643 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620755,nssv617593,nssv622846,nssv621696 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv526975 3 7053179 7144453 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703347 S 2026 0 1 "" esv2752015 3 7060713 7176316 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6987931,essv6987932,essv6981255,essv6981256 M 771 0 1 "" BEC_374 nsv237180 3 7115999 7116052 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255758 M 24 "" nsv460377 3 7170141 7267607 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536968 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01064 nsv818125 3 7230401 7237014 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417546 S 112 0 1 "" NA18971 nsv236588 3 7322025 7322322 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255166 M 24 "" nsv834610 3 7473814 7685271 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442675 S 95 1 0 "" nsv818126 3 7484265 7486375 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416632 S 112 0 1 "" NA19119 dgv1434e1 3 7499552 7539303 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv929,essv11306 M 271 0 0 "" NA18863 nsv524074 3 7514592 7514974 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699942 S 2026 0 1 "" nsv524307 3 7649009 7798055 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700208 S 2026 0 1 "" nsv237477 3 7660854 7660913 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv256055 M 24 "" dgv112n6 3 7795512 7795595 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv237689,nsv237941 M 24 "" nsv236890 3 7796263 7796263 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255468 M 24 "" nsv834611 3 7826212 8025940 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442676 S 95 1 0 "" nsv525159 3 7871679 7872220 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701233 S 2026 0 1 "" nsv519708 3 7880067 7887645 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv658305,nssv657746 M 2026 0 2 "" nsv528162 3 7909293 7915671 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704711 S 2026 0 1 "" nsv3686 3 7917550 7948498 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1652 S 9 1 0 "" NA19240 nsv516571 3 7957083 7957827 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv684370,nssv663708,nssv669252,nssv672632,nssv685649,nssv663008,nssv678439,nssv692974,nssv675233,nssv684836,nssv676874,nssv663677,nssv671062,nssv674544,nssv680718 M 2026 15 0 "" nsv518897 3 7957083 7966981 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696356 S 2026 1 0 "" nsv236523 3 8110542 8110542 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255101 M 24 "" nsv834612 3 8282048 8469256 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442677 S 95 0 1 "" esv32888 3 8383652 8384238 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99465 S 51 0 1 "" 22335 esv32855 3 8412164 8413261 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101616,essv101241,essv100919,essv96985,essv95666,essv95545,essv95857,essv94623,essv92967,essv93217,essv100477,essv100312,essv98441 M 51 0 13 "" 21603,21618,21693,21817,21841,21847,21911,21932,21939,22170,22298,22300,22352 nsv3687 3 8439309 8473037 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3087 S 9 1 0 "" NA18555 nsv519789 3 8526649 8529052 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697052 S 2026 0 1 "" nsv529038 3 8614568 8616133 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705751 S 2026 0 1 "" nsv519414 3 8638427 8650778 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696840 S 2026 0 1 "" nsv528575 3 8639738 8642735 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705194 S 2026 0 1 "" nsv516057 3 8777483 8785896 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv661520,nssv673717,nssv659279,nssv692217,nssv660134,nssv687413,nssv665906,nssv673315,nssv676755 M 2026 0 9 "" dgv275n21 3 8788927 8852996 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv517310,nsv519145 M 2026 26 0 "" dgv596n27 3 8795732 8837925 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv460399,nsv460404,nsv460379,nsv460416,nsv460398,nsv460391,nsv460380,nsv460408,nsv460397,nsv460407,nsv460390,nsv460396,nsv460393,nsv460401,nsv460389,nsv460405,nsv460409,nsv460387,nsv460392,nsv460400,nsv460378,nsv460418,nsv460403,nsv460388,nsv460402 M 1557 25 0 "" 1780854118_A,1780854219_A,1780854401_A,1780862089_A,1780862521_A,1780862530_A,1780862578_A,HGDP00072,HGDP00092,HGDP00143,HGDP00148,HGDP00341,HGDP00584,HGDP00882,HGDP00891,HGDP01380,HGDP01400,NINDS_102,NINDS_12,NINDS_124,NINDS_193,NINDS_200,NINDS_51,NINDS_73,NINDS_94 nsv460415 3 8801023 8856713 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv536996 S 1557 1 0 "" 1798860084_A esv2752019 3 8801121 8871630 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6981266,essv6985522 M 771 1 0 "" BEC_375 nsv518352 3 8922678 9106599 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695780 S 2026 0 1 "" nsv520776 3 8929959 8963809 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697603 S 2026 1 0 "" nsv528867 3 8929959 8970186 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705547 S 2026 0 1 "" nsv3689 3 8984109 9009889 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7768 S 9 0 1 "" NA12156 dgv276n21 3 9056319 9057851 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv516467,nsv518974 M 2026 0 5 "" nsv521065 3 9086221 9088024 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694415 S 2026 0 1 "" nsv3690 3 9208951 9240666 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5941 S 9 1 0 "" NA19129 nsv3691 3 9318138 9362788 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7769 S 9 0 1 "" NA12156 nsv515704 3 9338272 9341920 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv662633,nssv664485,nssv674129 M 2026 0 3 "" dgv277n21 3 9406750 9470119 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv525436,nsv526039 M 2026 0 2 "" nsv237037 3 9416529 9423291 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255615 M 24 "" nsv527954 3 9424055 9454142 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704464 S 2026 0 1 "" nsv3692 3 9438426 9472657 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1653 S 9 1 0 "" NA19240 nsv834614 3 9512372 9656150 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442678 S 95 1 0 "" nsv834615 3 9807737 9988323 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442679 S 95 0 1 "" nsv237238 3 9833219 9838746 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255816 M 24 "" nsv523205 3 10021703 10058935 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698925 S 2026 0 1 "" nsv521391 3 10035425 10064773 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698000 S 2026 0 1 "" nsv3693 3 10150126 10180247 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10333 S 9 1 0 "" NA18956 nsv437322 3 10205807 10232768 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467203 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19154 nsv524674 3 10209065 10213124 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700645 S 2026 0 1 "" nsv522516 3 10211947 10252866 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705885 S 2026 1 0 "" nsv523288 3 10213124 10232768 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699028 S 2026 0 1 "" nsv460420 3 10277172 10310786 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537000 S 1557 0 1 "" 1780854295_A nsv236904 3 10283633 10291681 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255482 M 24 "" nsv508903 3 10292037 10418578 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619313 S 4 1 0 "" NA10860 nsv522531 3 10377103 10391225 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705903 S 2026 0 1 "" nsv460421 3 10394173 10409941 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537001 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01351 nsv508904 3 10472678 10554639 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619314 S 4 1 0 "" NA10860 nsv460423 3 10481644 10488414 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537002 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00402 nsv460424 3 10494680 10502775 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537003 S 1557 0 1 "" 1780862075_A nsv519313 3 10497678 10500187 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696786 S 2026 0 1 "" nsv3694 3 10541244 10576262 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1654 S 9 1 0 "" NA19240 nsv3695 3 10583826 10601466 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10334 S 9 1 0 "" NA18956 nsv523167 3 10608169 10608335 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698879 S 2026 0 1 "" nsv528879 3 10613324 10617523 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705559 S 2026 0 1 "" nsv526081 3 10624468 10631823 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702325 S 2026 0 1 "" nsv460425 3 10664671 10755801 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537004 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00862 nsv3696 3 10850770 10884081 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1655 S 9 1 0 "" NA19240 nsv522643 3 10941588 10941711 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv706043 S 2026 0 1 "" nsv508209 3 11031778 11093066 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622452 S 4 0 1 "" NA18994 nsv518622 3 11034996 11040807 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696070 S 2026 0 1 "" nsv3697 3 11071142 11088654 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4596 S 9 0 1 "" NA12878 nsv517601 3 11082761 11085788 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv652478,nssv660719,nssv661445,nssv681649,nssv677644,nssv665691,nssv667091,nssv678948,nssv692552,nssv669727,nssv685760,nssv690589,nssv660517 M 2026 0 13 "" nsv527441 3 11371562 11381692 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703882 S 2026 1 0 "" nsv437323 3 11378441 11397319 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467204 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19132 dgv113n6 3 11391397 11395159 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv237921,nsv237002 M 24 "" nsv3698 3 11534032 11566187 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6993 S 9 1 0 "" NA12156 nsv517831 3 11558254 11593468 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695235 S 2026 0 1 "" nsv520880 3 11580373 11593468 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv677738,nssv676873 M 2026 0 2 "" nsv237362 3 11589720 11589795 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255940 M 24 "" nsv237022 3 11780985 11782177 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255600 M 24 "" nsv834616 3 11795888 11952510 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442680,nssv1442681 M 95 0 2 "" nsv3700 3 11850373 11878336 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7771 S 9 0 1 "" NA12156 nsv3701 3 11863949 11899294 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4597 S 9 1 0 "" NA12878 nsv524443 3 11900967 11974795 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700375 S 2026 1 0 "" nsv517490 3 11907455 11920930 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv672769,nssv652179 M 2026 0 2 "" nsv437679 3 11920279 11935850 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467560 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA10838 nsv460427 3 12005034 12043485 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537005 S 1557 0 1 "" 1780862197_A nsv519277 3 12070130 12119321 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv655185,nssv699337,nssv674278,nssv661109 M 2026 0 4 "" nsv7351 3 12127602 12876345 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10335 S 9 0 0 "" NA18956 nsv236690 3 12157059 12166215 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255268 M 24 "" nsv236830 3 12171534 12171588 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255408 M 24 "" nsv3702 3 12273075 12317716 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7772 S 9 0 1 "" NA12156 esv2751977 3 12469278 12903548 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6988886,essv6985056,essv6985057,essv6985058,essv6987143 M 771 1 0 "" BEC_830 nsv3703 3 12496244 12529346 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5942 S 9 1 0 "" NA19129 dgv597n27 3 12599070 12792622 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv460429,nsv460430,nsv460431,nsv460432,nsv460433 M 1557 5 0 "" HGDP00706,HGDP00708,HGDP00860,HGDP01018,HGDP01019 nsv460434 3 12684167 12777182 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537012 S 1557 0 1 "" 1780862573_A nsv818127 3 12772563 12781123 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417396 S 112 1 0 "" NA18949 nsv460435 3 12829626 12993488 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537013 S 1557 0 1 "" 1780862019_A nsv834617 3 12943362 13120000 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442682 S 95 0 1 "" dgv1435e1 3 12945170 13265554 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv4493,esv158 M 271 0 0 "" NA18552 esv33832 3 12989960 13012361 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99768 S 51 1 0 "" 22086 esv33247 3 13021514 13049045 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100830,essv96926 M 51 0 2 "" 21656,21817 nsv460442 3 13070532 13114968 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537015 S 1557 0 1 "" 1780862043_A nsv3704 3 13150606 13182200 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1656 S 9 1 0 "" NA19240 nsv10251 3 13227279 13230122 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28812,nssv28717 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18537,NA19144 nsv3705 3 13285856 13303212 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6994 S 9 1 0 "" NA12156 nsv3706 3 13339869 13371552 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6995 S 9 1 0 "" NA12156 nsv519673 3 13523520 13539048 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698802,nssv684600,nssv657501,nssv685602,nssv680213,nssv688343,nssv680975,nssv658213,nssv657667,nssv675314 M 2026 0 10 "" nsv3707 3 13568837 13596782 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1657 S 9 1 0 "" NA19240 nsv526900 3 13626836 13628401 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703260 S 2026 0 1 "" nsv3708 3 13637848 13669998 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5943 S 9 1 0 "" NA19129 nsv441812 3 13682416 13684365 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv236154 3 13728392 13728695 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv254732 M 24 "" nsv524549 3 13738809 13742871 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700500 S 2026 1 0 "" nsv834618 3 13836606 13894094 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442683,nssv1442684 M 95 0 2 "" nsv3709 3 13867006 13890672 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4598 S 9 1 0 "" NA12878 nsv3711 3 13922839 13954598 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1658 S 9 1 0 "" NA19240 nsv526467 3 14066429 14098907 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702771 S 2026 0 1 "" nsv521096 3 14152252 14170683 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697784 S 2026 0 1 "" nsv517801 3 14237274 14257371 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695204 S 2026 1 0 "" nsv516689 3 14266507 14270202 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv658677,nssv670166 M 2026 0 2 "" nsv834619 3 14370830 14504481 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442687,nssv1442686 M 95 1 1 "" nsv3712 3 14484365 14518236 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3088,nssv5944 M 9 2 0 "" NA18555,NA19129 nsv518216 3 14507029 14518673 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695641 S 2026 0 1 "" nsv525798 3 14507029 14518673 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701980 S 2026 1 0 "" nsv521453 3 14518330 14530815 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698064 S 2026 0 1 "" nsv460447 3 14550447 14562321 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537016 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01147 nsv520402 3 14557673 14558198 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv663736,nssv691525 M 2026 0 2 "" nsv460448 3 14562321 14582980 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537017 S 1557 0 1 "" NINDS_66 nsv460449 3 14617282 14645567 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537018 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01296 nsv3713 3 14621065 14629570 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2387 S 9 1 0 "" NA18555 nsv508210 3 14621139 14734579 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620203 S 4 0 1 "" NA15510 nsv527170 3 14657373 14661389 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703564 S 2026 1 0 "" esv33420 3 14698790 14699241 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99572 S 51 1 0 "" 22217 nsv520162 3 14705461 14706263 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv661302,nssv677874 M 2026 0 2 "" nsv507082 3 14710728 14716728 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617594 S 4 1 0 "" CHM nsv519602 3 14879451 14940470 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696945 S 2026 0 1 "" nsv460452 3 14884633 14922543 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537020 S 1557 0 1 "" NINDS_78 dgv1436e1 3 14886274 15137707 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv22874,esv748 M 271 0 0 "" NA12760 nsv834620 3 14928673 15109827 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442688 S 95 1 0 "" essv17407 3 14933078 15026556 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12760 nsv10252 3 14939303 14941093 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12068 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA12155 nsv237085 3 15227125 15230390 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255663 M 24 "" nsv525308 3 15234869 15236389 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701415 S 2026 0 1 "" nsv524536 3 15315751 15317854 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700486 S 2026 0 1 "" nsv834621 3 15340786 15525967 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442689 S 95 1 0 "" nsv522980 3 15357874 15364820 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698650 S 2026 0 1 "" nsv438390 3 15366898 15373051 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv471228,nssv471230,nssv471229 M 269 0 3 Samples from several populations that are part of the HapMap project. "" NA18582,NA18966,NA18990 nsv834622 3 15414318 15603594 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442690 S 95 1 0 "" nsv460453 3 15667963 15749829 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537021 S 1557 0 1 "" 1780862226_A nsv529014 3 15694283 15908745 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705725 S 2026 0 1 "" nsv521108 3 15940493 15942654 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv682353,nssv683306,nssv686645,nssv686959 M 2026 0 4 "" nsv526018 3 15940493 15953959 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702248 S 2026 0 1 "" nsv521442 3 16167147 16188684 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698052 S 2026 1 0 "" nsv517902 3 16174038 16175395 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695311 S 2026 1 0 "" dgv1437e1 3 16202432 16231043 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv13401,esv955 M 271 0 0 "" NA18872 nsv10253 3 16213419 16219753 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28823,nssv28691,nssv11953,nssv12683 M 31 0 4 Samples from several populations that are part of the HapMap project. "" NA07029,NA18504,NA18972,NA19007 nsv515853 3 16213998 16216080 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv665017,nssv681223 M 2026 0 2 "" nsv438391 3 16246804 16248562 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv471231,nssv471232 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA10846,NA12144 nsv236960 3 16249625 16251434 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255538 M 24 "" nsv834623 3 16330424 16490568 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442691 S 95 1 0 "" nsv834625 3 16429298 16618136 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442692 S 95 1 0 "" nsv509814 3 16602744 16608744 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621547,nssv618569,nssv623895,nssv622021 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv818128 3 16631335 16638687 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417145 S 112 0 1 "" NA18542 nsv3714 3 16639129 16671436 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5945 S 9 1 0 "" NA19129 nsv437690 3 16662041 16674562 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467571 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA12801 nsv818129 3 16667935 16670344 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416040,nssv1416041 M 112 0 2 "" NA12801,NA12813 nsv509815 3 16715099 16721099 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618570 S 4 0 1 "" CHM nsv507083 3 16732453 16738453 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617595 S 4 1 0 "" CHM nsv460454 3 16826206 16849092 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537022 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00103 nsv237263 3 17165179 17165255 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255841 M 24 "" nsv3715 3 17489329 17553182 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1659,nssv5946 M 9 0 2 "" NA19129,NA19240 nsv442855 3 17504952 17519017 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv3716 3 18123733 18157226 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5947 S 9 1 0 "" NA19129 nsv460455 3 18360736 18403454 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537023 S 1557 0 1 "" NINDS_91 nsv517846 3 18552212 18609876 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695251 S 2026 1 0 "" nsv237035 3 18612678 18612678 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255613 M 24 "" nsv518336 3 18676328 18681862 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695765 S 2026 0 1 "" nsv522311 3 18676328 18690244 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695091 S 2026 0 1 "" nsv834626 3 18771028 18905397 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442693 S 95 1 0 "" nsv237610 3 18796514 18796514 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv256188 M 24 "" nsv236778 3 18796548 18796548 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255356 M 24 "" nsv507084 3 18802562 18808562 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622847,nssv617596 M 4 2 0 "" CHM,NA18994 nsv517847 3 18820351 19458699 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695252 S 2026 1 0 "" nsv516520 3 18965360 18971361 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv687331,nssv671551,nssv668818 M 2026 0 3 "" nsv524040 3 19241339 19244856 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699904 S 2026 0 1 "" nsv3717 3 19480273 19512648 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6996 S 9 1 0 "" NA12156 nsv3718 3 19495856 19540673 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7773 S 9 0 1 "" NA12156 nsv433358 3 19522188 19971512 CNV Gain Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463239 S 9 1 0 "" NA15510 esv35078 3 19530275 20744740 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6979125,essv6979124 M 771 1 0 "" NA15510 nsv507085 3 19836330 19842330 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620756,nssv622848 M 4 2 0 "" NA15510,NA18994 nsv237606 3 19986449 19986548 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv256184 M 24 "" nsv834627 3 20043119 20202979 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442694 S 95 0 1 "" nsv433359 3 20065912 20562576 CNV Gain Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463240 S 9 1 0 "" NA15510 nsv3719 3 20108247 20125206 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7774 S 9 0 1 "" NA12156 esv2422249 3 20138612 20601960 CNV Deletion Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161535 S 181 0 1 "" ND04502 nsv237514 3 20166017 20173747 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv256092 M 24 "" dgv1438e1 3 20240591 20515632 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv10346,esv427 M 271 0 0 "" NA18506 nsv834628 3 20240612 20399091 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442695 S 95 0 1 "" nsv3720 3 20269617 20300327 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2389 S 9 0 1 "" NA18555 nsv460456 3 20280236 20411497 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537024 S 1557 0 1 "" NINDS_216 nsv3722 3 20296092 20340792 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1660,nssv7775,nssv3089,nssv5948 M 9 4 0 "" NA12156,NA18555,NA19129,NA19240 nsv508906 3 20316071 20323896 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623367 S 4 1 0 "" NA18994 dgv1439e1 3 20351254 20515632 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv14612,essv16985,essv11255,essv14528,essv19520,essv13803 M 271 0 0 "" NA12864,NA19093,NA19144,NA19153,NA19202,NA19204 nsv3723 3 20382715 20427885 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7776 S 9 0 1 "" NA12156 nsv460457 3 20389234 20411497 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537025 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00930 nsv522476 3 20411497 20418553 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705841 S 2026 0 1 "" nsv3724 3 20441519 20452176 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4599 S 9 1 0 "" NA12878 nsv460458 3 20455257 20488623 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537026 S 1557 0 1 "" NINDS_16 nsv460459 3 20455257 20580306 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537027 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01031 nsv3725 3 20522478 20567757 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5949 S 9 0 1 "" NA19129 nsv521811 3 20545377 20550990 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694582 S 2026 0 1 "" nsv520062 3 20558678 20559358 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv660358,nssv662660,nssv671751 M 2026 0 3 "" nsv460460 3 20613232 20693128 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537028 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00645 nsv525840 3 20618484 20619666 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702033 S 2026 0 1 "" nsv507086 3 20618765 20624765 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621697,nssv617597,nssv620757 M 4 3 0 "" CHM,NA10860,NA15510 nsv460462 3 20659827 20683255 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537030 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00786 nsv508907 3 20716329 20734001 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619316 S 4 1 0 "" NA10860 nsv3726 3 20721814 20733850 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1661,nssv4600 M 9 2 0 "" NA12878,NA19240 nsv526758 3 20769179 20773218 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703108 S 2026 0 1 "" nsv509816 3 20798808 20804808 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622022,nssv623896,nssv621548 M 4 0 3 "" NA10860,NA15510,NA18994 nsv834629 3 20853906 21032596 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442697 S 95 0 1 "" esv33755 3 20920301 20920416 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98707,essv97204 M 51 0 2 "" 21606,22075 esv33382 3 20946175 20946351 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99878 S 51 0 1 "" 22086 nsv508211 3 20948375 21000548 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622453 S 4 0 1 "" NA18994 esv2422219 3 21039897 21195101 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161557 S 181 1 0 "" ND03710 nsv460463 3 21058100 21154336 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537031 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00864 nsv528558 3 21081660 21226323 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705173 S 2026 1 0 "" nsv3727 3 21110003 21154577 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4663 S 9 0 1 "" NA19129 dgv1440e1 3 21180674 21351652 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1411,essv19877 M 271 0 0 "" NA11881 nsv516562 3 21197769 21320643 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv653131,nssv691963,nssv692472,nssv670349,nssv652872,nssv682375,nssv684301 M 2026 7 0 "" esv35115 3 21216660 21353743 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6978130,essv6978129,essv6986552 M 771 1 0 "" NA11881 dgv598n27 3 21232313 21320643 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv460468,nsv460465,nsv460467,nsv460466,nsv460469 M 1557 5 0 "" HGDP00729,HGDP01063,HGDP01067,NINDS_21,NINDS_96 nsv818130 3 21232313 21320643 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418050 S 112 1 0 "" NA11881 esv33585 3 21233259 21310830 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97298,essv99274 M 51 2 0 "" 21879,22275 esv2751991 3 21239774 21318600 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6981978,essv6981977 M 771 1 0 "" BEC_51 nsv834630 3 21286623 21466331 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442700,nssv1442698,nssv1442701,nssv1442699 M 95 0 4 "" nsv238000 3 21432538 21440813 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv256578 M 24 "" nsv522577 3 21479741 21480484 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705964 S 2026 0 1 "" nsv834631 3 21587287 21738891 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442702 S 95 1 0 "" nsv527771 3 21691239 21701367 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704260 S 2026 0 1 "" esv2751992 3 21761897 22187361 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6988734,essv6987453,essv6983943 M 771 1 0 "" BEC_736 nsv834632 3 21778945 21949086 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442703 S 95 1 0 "" nsv834633 3 21893268 22063342 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442704 S 95 0 1 "" nsv460473 3 21951417 21960421 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537038 S 1557 0 1 "" NINDS_46 nsv525096 3 22032222 22151585 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701155 S 2026 0 1 "" nsv460475 3 22038506 22119073 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537039 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01232 nsv508212 3 22051780 22075123 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620205,nssv622454 M 4 0 2 "" NA15510,NA18994 nsv3728 3 22052854 22108203 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9616,nssv2390,nssv5950,nssv4601 M 9 0 4 "" NA12878,NA18507,NA18555,NA19129 dgv1441e1 3 22052897 22231873 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv6119,essv6008,essv6650,essv4191,essv14754,esv164,essv7302,essv3517 M 271 0 0 "" NA18526,NA18532,NA18571,NA18592,NA18608,NA18965,NA19159 nsv438392 3 22058240 22060813 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv471233,nssv471234 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA18503,NA18505 nsv521942 3 22098068 22114503 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694710 S 2026 0 1 "" nsv516395 3 22108269 22112444 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv688385,nssv668018 M 2026 0 2 "" nsv519136 3 22150071 22157028 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696614 S 2026 0 1 "" nsv460476 3 22157028 22181836 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537040 S 1557 0 1 "" NINDS_214 nsv515836 3 22182037 22204501 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv693750,nssv660630,nssv664953,nssv697669,nssv668180,nssv690218,nssv669407 M 2026 0 7 "" nsv3729 3 22245383 22263327 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1663 S 9 0 1 "" NA19240 nsv528001 3 22253501 22268613 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704526 S 2026 0 1 "" esv33430 3 22255614 22261196 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100929,essv92805,essv98564,essv99945,essv97720 M 51 0 5 "" 21693,21944,22085,22086,22278 nsv526011 3 22312035 22313296 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702239 S 2026 0 1 "" nsv438393 3 22323148 22338890 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv471237,nssv471236 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA18912,NA18914 nsv834634 3 22395057 22549025 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442705 S 95 1 0 "" nsv526662 3 22401922 22416265 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702990 S 2026 0 1 "" nsv237602 3 22441562 22441562 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv256180 M 24 "" nsv518047 3 22478902 22479139 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695458 S 2026 0 1 "" nsv507087 3 22489886 22495886 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621698,nssv622850 M 4 2 0 "" NA10860,NA18994 nsv3730 3 22517734 22562429 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5951 S 9 0 1 "" NA19129 esv2751995 3 22526009 22575200 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6989254,essv6987996 M 771 0 1 "" BEC_312 nsv525062 3 22546900 22584533 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701114 S 2026 0 1 "" nsv460478 3 22573362 22577022 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537041 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00653 nsv515699 3 22606597 22615652 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv669513,nssv666789,nssv670485,nssv684279,nssv664458,nssv682605 M 2026 0 6 "" nsv528981 3 22615652 22619924 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705680 S 2026 0 1 "" nsv522799 3 22779841 22840351 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698444 S 2026 0 1 "" nsv522927 3 22998578 23001892 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698589 S 2026 0 1 "" nsv517473 3 23006898 23007344 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv670719,nssv700934,nssv664828,nssv678277,nssv672355,nssv666763,nssv653340,nssv682269,nssv678438,nssv652121,nssv655369,nssv652940,nssv687159,nssv656899,nssv682239,nssv655012 M 2026 1 15 "" nsv520551 3 23090295 23095064 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697481 S 2026 0 1 "" nsv834636 3 23113657 23276447 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442706,nssv1442708 M 95 1 1 "" nsv522651 3 23156561 23163047 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv706051 S 2026 0 1 "" nsv3731 3 23189765 23223594 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7777 S 9 1 0 "" NA12156 nsv236860 3 23417138 23420641 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255438 M 24 "" nsv526739 3 23496208 23497221 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703082 S 2026 0 1 "" nsv460479 3 23601923 23782554 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537042 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00543 nsv834637 3 23678932 23861148 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442709 S 95 0 1 "" nsv520934 3 23734243 23745137 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697696 S 2026 0 1 "" nsv238011 3 23739078 23739407 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv256589 M 24 "" nsv834638 3 23938864 24092195 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442710 S 95 0 1 "" nsv834639 3 24012117 24208929 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442711 S 95 1 0 "" nsv441813 3 24083075 24089943 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv818131 3 24084116 24088701 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417446 S 112 0 1 "" NA18953 nsv526740 3 24118277 24118501 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703083 S 2026 0 1 "" nsv3733 3 24191581 24236753 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7780 S 9 0 1 "" NA12156 nsv524922 3 24240146 24242043 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700935 S 2026 0 1 "" nsv527561 3 24260772 24288510 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704022 S 2026 0 1 "" dgv278n21 3 24267829 24274509 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv519524,nsv521447 M 2026 0 2 "" nsv528341 3 24267829 24274509 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704923 S 2026 1 0 "" nsv834640 3 24314783 24468609 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442712 S 95 1 0 "" nsv522159 3 24337256 24340665 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694933 S 2026 0 1 "" nsv507088 3 24353586 24359586 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617598 S 4 1 0 "" CHM dgv74n68 3 24440866 24615597 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH nsv834642,nsv834641 M 95 3 0 "" nsv520648 3 24462470 24462634 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697536 S 2026 0 1 "" dgv1442e1 3 24627517 24917930 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv606,essv4819 M 271 0 0 "" NA18620 nsv10254 3 24636745 24641300 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28894,nssv28731 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA11830 essv7683 3 24700007 24788964 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18620 esv34635 3 24721300 24788964 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6988232,essv6979735,essv6979736,essv6989115 M 771 0 1 "" NA18620 nsv460480 3 24721382 24791978 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537043 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01095 nsv460481 3 24748699 24788964 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537044 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01227 nsv437325 3 24753694 24765839 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467206 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18521 nsv834643 3 24754631 24917890 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442716 S 95 1 0 "" nsv516980 3 24755994 24757243 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv667093,nssv685819,nssv661497,nssv684938,nssv656656,nssv677279,nssv670486,nssv691120,nssv663489,nssv653546,nssv658641,nssv692713,nssv691390 M 2026 0 13 "" nsv10255 3 24804250 24807562 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11983 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18504 nsv3734 3 24836572 24881870 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7781 S 9 0 1 "" NA12156 nsv236994 3 24893859 24894705 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255572 M 24 "" nsv834644 3 24911991 25087614 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442717 S 95 0 1 "" nsv460482 3 24941772 25046620 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537045 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00884 nsv237528 3 25147424 25147502 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv256106 M 24 "" nsv508213 3 25181154 25301200 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618710 S 4 0 1 "" NA10860 nsv834645 3 25338727 25530111 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442719 S 95 1 0 "" nsv524030 3 25425947 25428185 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699893 S 2026 0 1 "" nsv528608 3 25465973 25468182 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705234 S 2026 1 0 "" nsv3735 3 25563303 25608024 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7782 S 9 0 1 "" NA12156 nsv528280 3 25583580 25599638 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704850 S 2026 1 0 "" nsv507089 3 25664901 25670901 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617599 S 4 1 0 "" CHM nsv3736 3 25768838 25801683 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6997 S 9 1 0 "" NA12156 dgv71n17 3 25802546 25832974 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437326,nsv437327 M 60 0 2 "" NA19142,NA19211 nsv441814 3 25825784 25829901 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv3737 3 25976758 25991724 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5952 S 9 1 0 "" NA19129 nsv834647 3 26008363 26214700 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442720 S 95 1 0 "" nsv834648 3 26011987 26134875 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442721 S 95 1 0 "" nsv517542 3 26021365 26121049 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv668108,nssv684535,nssv652313 M 2026 0 3 "" nsv818132 3 26021365 26121049 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417272 S 112 0 1 "" NA12234 dgv1443e1 3 26021365 26194166 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv19862,essv18623,esv761 M 271 0 0 "" NA12234 nsv3738 3 26083878 26128210 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2391 S 9 0 1 "" NA18555 dgv114n6 3 26098852 26098980 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv236575,nsv237637 M 24 "" nsv3739 3 26101818 26132432 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10336 S 9 1 0 "" NA18956 nsv10256 3 26187851 26195969 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11802 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18502 nsv3740 3 26227976 26273026 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7783 S 9 0 1 "" NA12156 esv2751997 3 26286100 26398500 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6984547,essv6987618 M 771 1 0 "" BEC_717 nsv3741 3 26398843 26427766 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6998,nssv1664 M 9 0 2 "" NA12156,NA19240 nsv433310 3 26407350 26414475 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463191 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA12156 nsv442856 3 26409128 26414347 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv237933 3 26414511 26420552 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv256511 M 24 "" nsv237043 3 26444892 26444986 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255621 M 24 "" nsv834649 3 26478245 26651493 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442722 S 95 1 0 "" nsv528020 3 26516696 26522337 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704549 S 2026 0 1 "" nsv437328 3 26579062 26596082 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467209 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18860 nsv526575 3 26657363 26662581 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702893 S 2026 0 1 "" nsv524615 3 26821178 26872826 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700576 S 2026 1 0 "" nsv236716 3 26864856 26867994 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255294 M 24 "" nsv518665 3 26922419 26933421 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694259 S 2026 0 1 "" nsv509817 3 26961347 26967347 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622023 S 4 0 1 "" NA10860 nsv509818 3 27361320 27367320 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621549,nssv618571,nssv623897,nssv622024 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv3742 3 27361897 27394652 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6999 S 9 1 0 "" NA12156 nsv522583 3 27443588 27446835 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705970 S 2026 0 1 "" nsv509819 3 27763618 27769618 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623898,nssv621550 M 4 0 2 "" NA15510,NA18994 nsv508214 3 28132558 28173534 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620206 S 4 0 1 "" NA15510 nsv230 3 28158923 28173995 CNV Loss Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv230 S 1 0 1 "" NA15510 nsv3745 3 28158923 28173995 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv11057 S 9 0 1 "" NA15510 nsv236215 3 28255426 28255426 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv254793 M 24 "" nsv3746 3 28448967 28481392 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3153 S 9 1 0 "" NA12878 nsv524090 3 28606128 28620282 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699962 S 2026 0 1 "" esv2751999 3 28635630 28680800 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6990091,essv6985171,essv6985170 M 771 0 1 "" SPC_113 nsv441815 3 28785441 28791112 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv516014 3 28786333 28789921 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv667902,nssv672448,nssv673514,nssv688639,nssv665733 M 2026 0 5 "" nsv441816 3 29013259 29016700 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" essv9401 3 29158899 29340599 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18853 dgv1444e1 3 29158899 29670492 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv14721,esv454 M 271 0 0 "" NA19159 nsv521764 3 29347408 29348278 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694531 S 2026 0 1 "" nsv527860 3 29535046 29536966 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704358 S 2026 0 1 "" nsv818133 3 29548553 29551969 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417335 S 112 0 1 "" NA18609 nsv834650 3 29648645 29791145 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442723,nssv1442724 M 95 2 0 "" nsv10257 3 29654069 29656481 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv29121,nssv11478 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18564,NA18975 nsv518057 3 29925173 29929694 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695468 S 2026 0 1 "" nsv441817 3 30042734 30046449 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv834651 3 30058419 30215810 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442725 S 95 1 0 "" nsv438394 3 30167422 30170791 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv471242,nssv471238,nssv471241,nssv471240,nssv471239 M 269 0 5 Samples from several populations that are part of the HapMap project. "" NA18529,NA18570,NA18579,NA18945,NA18978 nsv3747 3 30228227 30269426 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7784 S 9 0 1 "" NA12156 nsv7352 3 30513291 30875630 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7000 S 9 0 0 "" NA12156 nsv507090 3 30586428 30592428 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620758,nssv617600,nssv621699 M 4 3 0 "" CHM,NA10860,NA15510 nsv3748 3 30639723 30642742 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3090 S 9 1 0 "" NA18555 nsv522284 3 30820370 30823257 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694152 S 2026 0 1 "" nsv522385 3 30833726 30833958 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695164 S 2026 0 1 "" nsv460484 3 30856301 30967587 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537047 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01168 nsv515560 3 30885556 30888044 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv690160,nssv671299,nssv663901,nssv683384,nssv661021,nssv676182,nssv660339,nssv678013,nssv665455,nssv665671,nssv672268,nssv693107 M 2026 0 12 "" nsv441818 3 30886154 30888645 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv237326 3 30966212 30966212 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255904 M 24 "" nsv441819 3 30967806 30973751 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv3749 3 31090129 31123026 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3154 S 9 1 0 "" NA12878 nsv460485 3 31719237 31750758 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537048 S 1557 0 1 "" 1780854465_A nsv818135 3 31797341 31806124 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418541 S 112 0 1 "" NA12236 nsv521977 3 31825162 31825509 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694744 S 2026 1 0 "" nsv516113 3 31837685 31838437 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv666288,nssv702224,nssv699605,nssv689132 M 2026 0 4 "" nsv508216 3 32042086 32083714 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617474,nssv622455,nssv620207 M 4 0 3 "" CHM,NA15510,NA18994 esv33766 3 32056220 32056265 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98780 S 51 0 1 "" 21606 nsv3750 3 32071577 32091756 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2392,nssv3155 M 9 0 2 "" NA12878,NA18555 esv33201 3 32077906 32081854 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98716,essv98681,essv101163,essv100946,essv100941,essv95149,essv95213,essv98180,essv98163,essv94653,essv94140,essv94362,essv97036,essv97930,essv95275,essv97309,essv95774,essv92713,essv93693,essv96586,essv96030,essv93465,essv93332,essv97658,essv99452,essv96400,essv96421,essv94269 M 51 23 0 "" 21606,21618,21693,21721,21772,21791,21802,21808,21817,21837,21872,21879,21911,21944,21972,22011,22127,22128,22170,22278,22335,22371,22394 nsv3751 3 32104710 32150101 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7001 S 9 0 1 "" NA12156 nsv236695 3 32128745 32128901 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255273 M 24 "" nsv528609 3 32209618 32211062 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705235 S 2026 0 1 "" nsv526741 3 32333007 32334013 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703084 S 2026 0 1 "" nsv236546 3 32373794 32377782 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255124 M 24 "" nsv834652 3 32392288 32581418 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442726 S 95 0 1 "" nsv518025 3 32414789 32432202 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695435 S 2026 1 0 "" nsv522856 3 32465898 32486301 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698510 S 2026 1 0 "" nsv3752 3 32563236 32572930 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7786 S 9 0 1 "" NA12156 nsv237972 3 32633014 32634572 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv256550 M 24 "" nsv508908 3 32661125 32704580 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621193,nssv623368 M 4 2 0 "" NA15510,NA18994 nsv237812 3 32703966 32707048 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv256390 M 24 "" nsv507091 3 32917292 32923292 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622851 S 4 1 0 "" NA18994 nsv508909 3 32943800 32973304 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621194,nssv623369,nssv619318 M 4 3 0 "" NA10860,NA15510,NA18994 nsv3753 3 32982886 33043721 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1665,nssv5953 M 9 2 0 "" NA19129,NA19240 esv33555 3 33013866 33014088 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97202 S 51 1 0 "" 22075 nsv509820 3 33046083 33052083 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623900 S 4 0 1 "" NA18994 nsv834653 3 33242142 33398411 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442727 S 95 0 1 "" dgv1445e1 3 33270111 33446477 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv6873,esv105 M 271 0 0 "" NA18605 nsv522292 3 33277956 33296620 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695074 S 2026 0 1 "" nsv525895 3 33277956 33296620 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702098 S 2026 1 0 "" nsv10258 3 33395092 33398240 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11508 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18564 nsv10259 3 33410106 33411826 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11937 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19132 nsv460487 3 33484765 33577911 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537049 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01010 nsv236645 3 33528212 33529097 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255223 M 24 "" nsv525628 3 33562609 33635728 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701777 S 2026 0 1 "" nsv3754 3 33605566 33637521 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7787 S 9 0 1 "" NA12156 nsv3756 3 33654726 33686888 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7002 S 9 1 0 "" NA12156 nsv522881 3 33711130 34216690 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698537 S 2026 1 0 "" nsv3757 3 33739601 33771887 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1666 S 9 1 0 "" NA19240 nsv3758 3 33834690 33869141 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3091 S 9 1 0 "" NA18555 nsv518079 3 33889044 33901129 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695492 S 2026 0 1 "" nsv528809 3 33898833 33901129 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705483 S 2026 0 1 "" nsv3759 3 34312987 34346573 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1667 S 9 1 0 "" NA19240 nsv519548 3 34659002 34693804 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696914 S 2026 0 1 "" nsv526865 3 34673301 34674131 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703223 S 2026 1 0 "" nsv525435 3 34673301 34693804 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701563 S 2026 0 1 "" dgv279n21 3 34719756 34725068 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv520608,nsv523597 M 2026 0 2 "" dgv75n68 3 34722806 34891661 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH nsv834655,nsv834654 M 95 2 0 "" dgv115n6 3 34866996 34867131 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv236553,nsv236291 M 24 "" nsv834656 3 34981202 35131136 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442731 S 95 0 1 "" nsv460488 3 35329050 35346920 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537050 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00930 nsv834658 3 35424640 35614148 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442732 S 95 1 0 "" nsv528021 3 35466435 35566992 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704550 S 2026 0 1 "" esv32944 3 35557196 35564769 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97183 S 51 1 0 "" 22075 nsv526191 3 35690238 35847380 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702453 S 2026 0 1 "" nsv526436 3 35693851 35697969 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702739 S 2026 0 1 "" nsv516510 3 35775771 35913799 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv668761,nssv688814,nssv655068 M 2026 3 0 "" esv2752002 3 35780275 35907500 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6987198,essv6988913 M 771 1 0 "" SPC_133 dgv599n27 3 35798283 35913799 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv460490,nsv460489 M 1557 2 0 "" NINDS_46,NINDS_85 nsv834659 3 35872726 36032010 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442733 S 95 1 0 "" nsv523267 3 35923646 35944083 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699001 S 2026 0 1 "" nsv438395 3 35949438 35971877 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv471243 S 269 0 1 Samples from several populations that are part of the HapMap project. "" NA19194 nsv3760 3 35950003 35983768 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5954 S 9 1 0 "" NA19129 nsv527780 3 35962410 35993771 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704271 S 2026 0 1 "" nsv517502 3 35982118 35990129 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv652203,nssv683385,nssv668277,nssv655634,nssv699340 M 2026 1 4 "" dgv280n21 3 35982118 35993771 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv519232,nsv526585 M 2026 0 2 "" nsv438396 3 35991437 36030393 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv471248,nssv471247,nssv471245,nssv471244 M 269 0 4 Samples from several populations that are part of the HapMap project. "" NA18547,NA18943,NA18944,NA18947 nsv10260 3 36031493 36033049 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28769 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA07029 nsv523689 3 36226719 36319483 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699495 S 2026 0 1 "" dgv1446e1 3 36258534 36290961 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1162,essv2716 M 271 0 0 "" NA18944 nsv818136 3 36284900 36289024 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417367 S 112 0 1 "" NA18944 nsv522903 3 36360826 36379568 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698561 S 2026 0 1 "" nsv515984 3 36378968 36380078 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv678246,nssv657847,nssv694183,nssv665590,nssv685927 M 2026 0 5 "" dgv281n21 3 36404488 36432376 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv523547,nsv518247 M 2026 0 2 "" nsv3761 3 36423200 36456405 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1668 S 9 1 0 "" NA19240 nsv834660 3 36652421 36852834 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442734 S 95 0 1 "" nsv834661 3 36776052 36968161 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442736,nssv1442735 M 95 0 2 "" nsv3762 3 36810972 36844952 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3156 S 9 1 0 "" NA12878 nsv834662 3 36847088 37049965 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442737,nssv1442738 M 95 0 2 "" nsv834663 3 36982753 37165409 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442742,nssv1442739 M 95 0 2 "" nsv834664 3 37084876 37267799 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442743 S 95 0 1 "" nsv834665 3 37197468 37384583 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442744 S 95 0 1 "" nsv519352 3 37428116 37429062 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv663490,nssv671720,nssv655563 M 2026 0 3 "" nsv518574 3 37490345 37492466 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696018 S 2026 1 0 "" nsv522176 3 37498640 37536951 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694948 S 2026 0 1 "" nsv3763 3 37511872 37537705 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10337 S 9 1 0 "" NA18956 nsv508910 3 37661594 37734346 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623370,nssv621195 M 4 2 0 "" NA15510,NA18994 nsv834666 3 37721832 37903512 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442746,nssv1442745 M 95 1 1 "" nsv3764 3 37737740 37756340 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7788 S 9 1 0 "" NA12156 nsv3765 3 37772503 37817755 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5955 S 9 0 1 "" NA19129 nsv527466 3 37772976 37773508 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703909 S 2026 0 1 "" dgv1447e1 3 37806487 38079228 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv7414,esv165,essv24503,essv23605 M 271 0 0 "" NA12006,NA12802,NA18623 nsv10262 3 37876785 37879859 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11832 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18502 dgv1448e1 3 37880969 38079228 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv16873,essv22674,essv4252,essv23925,essv11222 M 271 0 0 "" NA12752,NA12814,NA18603,NA19204,NA19205 nsv522422 3 37889926 37915412 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705775 S 2026 0 1 "" nsv3767 3 37924833 37968862 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7789 S 9 0 1 "" NA12156 nsv518995 3 37927598 37935595 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696462 S 2026 0 1 "" nsv437702 3 37952421 37965104 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467583 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA10863 nsv437329 3 37952421 37971272 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467210 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19205 nsv10263 3 37953404 37962534 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28090,nssv28773,nssv28518 M 31 0 3 Samples from several populations that are part of the HapMap project. "" NA10863,NA12802,NA18572 esv32619 3 37955959 37961139 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv95291,essv96468,essv100163,essv94279 M 51 0 4 "" 21872,22261,22286,22394 nsv442857 3 37957108 37961932 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv600n27 3 37957465 37961253 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv460503,nsv460492,nsv460498,nsv460496,nsv460504,nsv460497,nsv460499,nsv460501,nsv460495,nsv460502,nsv460500,nsv460493 M 1557 0 12 "" HGDP00019,HGDP00023,HGDP00563,HGDP00616,HGDP00648,HGDP00679,HGDP00735,HGDP00746,HGDP00783,HGDP00961,NINDS_165,NINDS_230 nsv517156 3 37957465 37961253 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv676158,nssv673282,nssv669068,nssv664531,nssv672160,nssv657669,nssv675508,nssv673225,nssv690647,nssv660252,nssv688865,nssv657776,nssv687246,nssv675472,nssv661154,nssv659249,nssv672379,nssv652252,nssv670075,nssv686684,nssv656733,nssv688581,nssv677067,nssv667730,nssv692407,nssv652777,nssv686919,nssv660492,nssv669904,nssv659370,nssv654361,nssv672534,nssv678461,nssv664633,nssv680800,nssv676555,nssv668704,nssv691356,nssv693608,nssv659597,nssv682963,nssv686361,nssv668957,nssv660401,nssv657552,nssv693996,nssv653889,nssv668775,nssv654245,nssv654848,nssv663604,nssv681288,nssv659133,nssv689184,nssv669852,nssv663968,nssv692430,nssv693641,nssv667882,nssv683264,nssv684625,nssv670694,nssv658788,nssv690999,nssv692675,nssv675858,nssv655454,nssv690512 M 2026 0 68 "" nsv522017 3 37957465 37998557 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694786 S 2026 0 1 "" nsv522354 3 38001588 38038376 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695133 S 2026 0 1 "" nsv508911 3 38035790 38107567 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619319,nssv621196 M 4 2 0 "" NA10860,NA15510 nsv509821 3 38036927 38042927 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623901 S 4 0 1 "" NA18994 nsv237307 3 38129945 38130079 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255885 M 24 "" nsv3768 3 38230027 38233254 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5956 S 9 1 0 "" NA19129 nsv3769 3 38282798 38318189 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1669 S 9 1 0 "" NA19240 nsv528237 3 38286957 38321783 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704799 S 2026 0 1 "" nsv237015 3 38367697 38374705 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255593 M 24 "" nsv238024 3 38374713 38377275 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv256602 M 24 "" nsv3770 3 38580614 38616870 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3092,nssv5957,nssv10338,nssv3157 M 9 4 0 "" NA12878,NA18555,NA18956,NA19129 nsv508912 3 38600460 38668443 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621197,nssv618013 M 4 2 0 "" CHM,NA15510 nsv517802 3 38631037 38654368 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695206 S 2026 0 1 "" nsv527515 3 38763510 38817916 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703969 S 2026 0 1 "" nsv519335 3 38818651 38822156 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv655477,nssv693193 M 2026 0 2 "" dgv1449e1 3 38908752 39071102 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv184,essv10678,essv13417 M 271 0 0 "" NA18855,NA19192 nsv3771 3 39032315 39059327 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5958 S 9 1 0 "" NA19129 nsv441820 3 39174068 39188061 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv3772 3 39257006 39290462 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7790 S 9 1 0 "" NA12156 nsv236394 3 39263970 39263970 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv254972 M 24 "" nsv518801 3 39312945 39372712 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696254 S 2026 0 1 "" nsv460509 3 39332309 39372712 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537068 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00458 nsv509822 3 39419750 39425750 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622025 S 4 0 1 "" NA10860 nsv237887 3 39444180 39444180 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv256465 M 24 "" nsv523462 3 39468862 39475164 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699220 S 2026 0 1 "" nsv520957 3 39475148 39491489 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697708 S 2026 0 1 "" nsv236980 3 39485509 39485750 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255558 M 24 "" dgv1450e1 3 39509276 39530501 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1340,essv15909 M 271 0 0 "" NA19205 nsv517803 3 39876028 40007962 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695207 S 2026 1 0 "" nsv523927 3 39883849 39906519 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699772 S 2026 0 1 "" nsv3773 3 39884752 39918165 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7791 S 9 1 0 "" NA12156 nsv520165 3 39941630 39950123 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697258 S 2026 1 0 "" nsv460510 3 39967978 40007962 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537069 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01321 nsv834667 3 40165548 40333556 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442747 S 95 1 0 "" nsv509823 3 40208725 40214725 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623902,nssv621551 M 4 0 2 "" NA15510,NA18994 nsv3774 3 40279808 40324710 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7792 S 9 0 1 "" NA12156 nsv520025 3 40337126 40409100 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697184 S 2026 0 1 "" nsv818137 3 40443900 40541004 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418440 S 112 0 1 "" NA19192 nsv3775 3 40633107 40665485 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5959 S 9 1 0 "" NA19129 nsv3776 3 40805128 40839137 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7793 S 9 1 0 "" NA12156 nsv237398 3 40913039 40913039 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255976 M 24 "" nsv3778 3 40913609 40946382 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3158 S 9 1 0 "" NA12878 nsv521572 3 41303186 41334538 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698188 S 2026 0 1 "" nsv3779 3 41308704 41826208 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1670,nssv7794 M 9 0 2 "" NA12156,NA19240 dgv1451e1 3 41314156 41748757 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv543,essv3708 M 271 0 0 "" NA18947 nsv834670 3 41314158 41461422 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442748 S 95 1 0 "" nsv460512 3 41334538 41761013 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537070 S 1557 0 1 "" 1798860049_A nsv526908 3 41334538 41761013 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703268 S 2026 0 1 "" esv34828 3 41381332 41482500 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6988305,essv6980058,essv6980059,essv6980060 M 771 0 1 "" NA18947 essv602 3 41395796 41501946 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18947 nsv10264 3 41468819 41473216 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11967 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19132 nsv460513 3 41505934 41562681 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537071 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01234 esv33980 3 41543434 41544910 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98829 S 51 0 1 "" 21606 nsv10265 3 41573753 41581786 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28842,nssv28819 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18537,NA18942 nsv460514 3 41581696 41701066 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537072 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01236 dgv601n27 3 41592860 41613278 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv460516,nsv460515 M 1557 0 2 "" HGDP01099,HGDP01352 nsv460518 3 41592860 41645175 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537075 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00782 nsv441822 3 41755151 41763499 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv236421 3 41873081 41873136 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv254999 M 24 "" nsv460519 3 41875660 42042381 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537076 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00905 nsv3780 3 41904897 41949787 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7795 S 9 0 1 "" NA12156 nsv460520 3 41935010 42156400 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537077 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01340 esv32892 3 42104857 42108196 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100803 S 51 1 0 "" 21656 nsv834671 3 42105746 42279002 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442749 S 95 1 0 "" esv34472 3 42289659 42366484 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6987790,essv6980424,essv6980425 M 771 0 1 "" NA19171 dgv1452e1 3 42335110 42378384 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1235,essv8893 M 271 0 0 "" NA19171 nsv10266 3 42349839 42351945 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28757,nssv11931,nssv28464,nssv29151,nssv28994 M 31 5 0 Samples from several populations that are part of the HapMap project. "" NA10847,NA18563,NA18860,NA18975,NA19144 nsv527430 3 42509046 42532203 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703869 S 2026 0 1 "" nsv3781 3 42646613 42677631 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10339 S 9 1 0 "" NA18956 nsv3782 3 42748483 42780442 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10341 S 9 1 0 "" NA18956 nsv236207 3 42800590 42804092 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv254785 M 24 "" nsv3783 3 42901227 42945601 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7796 S 9 0 1 "" NA12156 nsv460523 3 43000990 43038410 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537078 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00514 nsv236200 3 43004506 43006848 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv254778 M 24 "" nsv237088 3 43006111 43006438 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255666 M 24 "" nsv834672 3 43107726 43281276 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442750 S 95 0 1 "" nsv3784 3 43151401 43196258 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7797 S 9 0 1 "" NA12156 nsv3785 3 43202483 43236664 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1672 S 9 1 0 "" NA19240 esv2752008 3 43260373 43335883 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6983756,essv6986502,essv6983757 M 771 1 0 "" BEC_621 nsv834673 3 43597989 43774880 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442751 S 95 1 0 "" nsv3786 3 43830608 43859939 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7798 S 9 0 1 "" NA12156 nsv3787 3 44022745 44057203 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3093 S 9 1 0 "" NA18555 nsv834674 3 44084421 44281588 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442753 S 95 1 0 "" nsv3789 3 44192178 44223929 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7003 S 9 1 0 "" NA12156 nsv528038 3 44400995 44436042 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704570 S 2026 1 0 "" dgv282n21 3 44400995 44436908 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv525792,nsv519315 M 2026 0 2 "" nsv527472 3 44436042 44436908 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703915 S 2026 0 1 "" nsv3790 3 44586503 44617148 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3159 S 9 1 0 "" NA12878 nsv3791 3 44813959 44848832 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3160 S 9 1 0 "" NA12878 nsv834675 3 44821716 44982877 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442754 S 95 1 0 "" nsv3792 3 44853184 44897823 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7799 S 9 0 1 "" NA12156 nsv521765 3 44915417 44926438 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694532 S 2026 0 1 "" nsv834676 3 44945203 45165852 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442771,nssv1442762,nssv1442759,nssv1442757,nssv1442758,nssv1442756,nssv1442760,nssv1442767,nssv1442770,nssv1442761,nssv1442766,nssv1442765,nssv1442764,nssv1442769,nssv1442768,nssv1442755 M 95 7 9 "" nsv508914 3 45021142 45063918 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619320 S 4 1 0 "" NA10860 nsv523767 3 45113519 45114105 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699588 S 2026 0 1 "" nsv3793 3 45227836 45258467 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7004 S 9 1 0 "" NA12156 nsv834677 3 45359766 45527711 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442772 S 95 1 0 "" nsv460524 3 45372990 45381596 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537079 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01269 nsv3794 3 45457472 45490679 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7800 S 9 1 0 "" NA12156 nsv236202 3 45584812 45585223 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv254780 M 24 "" nsv3795 3 45630356 45663936 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5960 S 9 1 0 "" NA19129 esv33645 3 45708302 45708456 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100988,essv95101,essv97796,essv93097,essv96442,essv100549 M 51 0 6 "" 21693,21721,21837,21863,22261,22298 nsv834678 3 45779298 45985260 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442773 S 95 1 0 "" nsv3796 3 45825965 45861049 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7005 S 9 0 1 "" NA12156 nsv3797 3 45868626 45902729 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1673 S 9 1 0 "" NA19240 dgv1453e1 3 45991468 46095404 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv10714,esv1208,essv14014 M 271 0 0 "" NA18508,NA19222 nsv237512 3 46020881 46021133 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv256090 M 24 "" nsv507092 3 46124497 46130497 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622852,nssv620760 M 4 2 0 "" NA15510,NA18994 dgv1454e1 3 46394638 46419798 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv12441,esv1141 M 271 0 0 "" NA19152 nsv10267 3 46398134 46415717 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12570 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19221 nsv507093 3 46545863 46551863 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621700 S 4 1 0 "" NA10860 nsv516623 3 46655067 46827683 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv656807,nssv674854,nssv669627,nssv674543,nssv683898,nssv659277,nssv684369,nssv659435,nssv672630 M 2026 0 9 "" dgv1455e1 3 46655456 46947493 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv8775,essv10530,essv12227,essv14602,essv16854,essv15889,essv17902,essv15047,essv12565,essv16101,essv9184,essv12518,essv15271,essv14169,essv10371,essv9900,essv16961,essv16343,essv14276,essv10121,essv8085,esv136,essv13102,essv9416,essv13419,essv12990,essv10081,essv11254,essv12397,essv12625 M 271 0 0 "" NA12003,NA18500,NA18852,NA18859,NA19092,NA19093,NA19094,NA19098,NA19099,NA19100,NA19101,NA19128,NA19129,NA19130,NA19140,NA19144,NA19145,NA19192,NA19193,NA19194,NA19204,NA19205,NA19206,NA19207,NA19208,NA19222,NA19223,NA19238,NA19240 nsv10268 3 46682173 46711722 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12600 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19221 esv33334 3 46752813 46766435 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98776,essv100786 M 51 2 0 "" 21606,21656 nsv3798 3 46753634 46840610 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9617,nssv1674,nssv5961 M 9 0 3 "" NA18507,NA19129,NA19240 nsv10269 3 46769108 46826721 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11491,nssv12044,nssv11862,nssv12630,nssv28795,nssv11961,nssv28629,nssv11669,nssv28669 M 31 0 8 Samples from several populations that are part of the HapMap project. "" NA18502,NA18517,NA18853,NA18860,NA19144,NA19173,NA19221,NA19240 essv8614 3 46770243 46947493 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19239 esv32999 3 46771064 46825077 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv95194,essv94025,essv97855,essv98990,essv96067,essv94855,essv92569,essv100623,essv100420 M 51 1 8 "" 21721,21802,21837,21938,22127,22231,22233,22298,22300 dgv24n14 3 46771793 46819251 CNV Loss Cooper et al 2008 18776910 SNP_array nsv433213,nsv433332,nsv433321,nsv433214 M 9 0 4 "" NA18507,NA18517,NA19129,NA19240 nsv438397 3 46772844 46821696 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv471253,nssv471255,nssv471251,nssv471256,nssv471250,nssv471258,nssv471254,nssv471252,nssv471249 M 269 0 8 Samples from several populations that are part of the HapMap project. "" NA18500,NA18501,NA18503,NA18505,NA18859,NA18860,NA19152,NA19154 nsv442859 3 46776821 46824285 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv508915 3 46830843 46929967 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619322 S 4 1 0 "" NA10860 nsv460526 3 46910531 46976354 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537080 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01079 nsv3800 3 46936652 46982245 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7006 S 9 0 1 "" NA12156 nsv3801 3 47176534 47221442 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7802 S 9 0 1 "" NA12156 nsv238095 3 47223234 47228431 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv256673 M 24 "" nsv3802 3 47371678 47416955 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7803 S 9 0 1 "" NA12156 nsv3803 3 47389136 47421001 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7007 S 9 1 0 "" NA12156 nsv3804 3 47423895 47428173 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1675 S 9 1 0 "" NA19240 nsv3805 3 47440806 47474108 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5962 S 9 1 0 "" NA19129 nsv3806 3 47463788 47493137 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2393 S 9 0 1 "" NA18555 esv2750544 3 47536356 47537626 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100898 S 51 1 0 "" 21656 esv33034 3 47540433 47553609 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv96906 S 51 1 0 "" 21817 nsv3807 3 47574889 47624308 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1676,nssv5963 M 9 2 0 "" NA19129,NA19240 nsv237419 3 47700470 47702076 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255997 M 24 "" nsv834679 3 47724479 47899010 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442775 S 95 0 1 "" nsv508916 3 47770450 47900325 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618014,nssv621198,nssv619323,nssv623371 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv3808 3 47779107 47821694 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2394,nssv3161,nssv7008,nssv5964,nssv9380,nssv1677 M 9 6 0 "" NA12156,NA12878,NA18517,NA18555,NA19129,NA19240 nsv231 3 47792065 47820591 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv231 S 1 1 0 "" NA15510 nsv10270 3 47797610 47820582 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12074,nssv29166,nssv11538,nssv28390,nssv11991,nssv28799,nssv28853,nssv12660 M 31 8 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA12740,NA12872,NA18517,NA18564,NA18860,NA19007,NA19221 nsv834681 3 48007004 48156779 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442777,nssv1442776 M 95 0 2 "" nsv834682 3 48113141 48286126 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442780,nssv1442779,nssv1442778 M 95 3 0 "" nsv237248 3 48172186 48172319 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255826 M 24 "" nsv834683 3 48276508 48468265 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442781,nssv1442782 M 95 2 0 "" nsv834684 3 48360703 48564327 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442783 S 95 1 0 "" nsv508917 3 48416697 48511795 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619324,nssv621199 M 4 2 0 "" NA10860,NA15510 nsv3809 3 48490772 48515166 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3094,nssv3162 M 9 2 0 "" NA12878,NA18555 nsv523981 3 48495293 48696044 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699837 S 2026 0 1 "" nsv834685 3 48540013 48720778 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442784 S 95 0 1 "" nsv236349 3 48574163 48574253 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv254927 M 24 "" nsv3811 3 48574184 48618813 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7804 S 9 0 1 "" NA12156 nsv818138 3 48585929 48706491 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417709 S 112 1 0 "" NA18999 nsv508918 3 48708649 48796944 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619325 S 4 1 0 "" NA10860 nsv834686 3 49081051 49245560 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442786 S 95 0 1 "" nsv236317 3 49270981 49272055 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv254895 M 24 "" nsv507094 3 49314495 49320495 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622853 S 4 1 0 "" NA18994 nsv236940 3 49374475 49379779 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255518 M 24 "" nsv237162 3 49419921 49421474 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255740 M 24 "" nsv834687 3 49423636 49606792 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442787 S 95 0 1 "" nsv236822 3 49469281 49469609 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255400 M 24 "" nsv237516 3 49540740 49541287 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv256094 M 24 "" nsv508217 3 49590450 49744900 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622456 S 4 0 1 "" NA18994 nsv237379 3 49618692 49618692 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255957 M 24 "" nsv3812 3 49644777 49655591 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7805 S 9 0 1 "" NA12156 nsv471425 3 49696385 49701200 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548243,nssv548247,nssv548246 M 3 "" nsv482080 3 49696385 49701200 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558441 S 1 1 0 "" KB1 nsv482082 3 49729969 49732127 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558443 S 1 1 0 "" KB1 nsv834688 3 49786119 49994303 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442788 S 95 0 1 "" dgv116n6 3 49786456 49792746 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv237675,nsv237797 M 24 "" nsv834689 3 49937934 50060123 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442789 S 95 0 1 "" nsv834690 3 50076839 50275628 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442790 S 95 0 1 "" nsv515986 3 50079311 50266789 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv675316,nssv673905,nssv702204,nssv681722,nssv668681,nssv671238,nssv692007,nssv688454,nssv678278,nssv669120,nssv657967,nssv665591,nssv660839,nssv682405,nssv691334,nssv668457,nssv673852,nssv684806,nssv669281,nssv674002,nssv693535,nssv675178,nssv654501,nssv688961,nssv692155,nssv689099,nssv692838 M 2026 0 27 "" nsv818139 3 50119955 50149576 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417195 S 112 0 1 "" NA18558 nsv523662 3 50119955 50560003 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699463 S 2026 0 1 "" nsv523560 3 50147401 50327204 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699341 S 2026 0 1 "" dgv602n27 3 50153015 50299676 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv460529,nsv460530 M 1557 0 2 "" NINDS_201,NINDS_49 dgv1456e1 3 50173482 50346381 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv212,essv14068,essv17775,essv2335 M 271 0 0 "" NA10831,NA18861,NA18940 nsv834692 3 50173489 50368468 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442791,nssv1442792,nssv1442800,nssv1442797,nssv1442805,nssv1442802,nssv1442799,nssv1442808,nssv1442803,nssv1442809,nssv1442804,nssv1442810,nssv1442801,nssv1442806,nssv1442794,nssv1442795,nssv1442793,nssv1442798 M 95 0 18 "" nsv460531 3 50222828 50411831 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537083 S 1557 0 1 "" NINDS_54 nsv834693 3 50263836 50482968 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442811,nssv1442813,nssv1442812 M 95 0 3 "" nsv3813 3 50308615 50343224 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1678 S 9 0 1 "" NA19240 nsv460532 3 50511277 50591053 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537084 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01147 nsv3814 3 50534257 50566030 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv299 S 9 1 0 "" NA19240 nsv460533 3 50549217 50653155 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537085 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00602 nsv508919 3 50609191 50688773 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619326 S 4 1 0 "" NA10860 nsv482083 3 50618890 50624266 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558444 S 1 1 0 "" KB1 nsv3815 3 50637468 50681395 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5965,nssv3095 M 9 2 0 "" NA18555,NA19129 nsv237212 3 50741444 50742235 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255790 M 24 "" nsv7353 3 50858688 50950271 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9618,nssv5966,nssv10343,nssv2395,nssv9381,nssv300,nssv10342,nssv3164,nssv11059,nssv11058,nssv5967,nssv3163 M 9 0 0 "" NA12878,NA15510,NA18507,NA18517,NA18555,NA18956,NA19129,NA19240 nsv10271 3 50865193 50888532 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12713,nssv29024,nssv28140,nssv29181,nssv29130,nssv28852,nssv28883,nssv28849,nssv11568 M 31 9 0 Samples from several populations that are part of the HapMap project. "" NA07048,NA12802,NA18563,NA18564,NA18942,NA18972,NA18975,NA18980,NA19007 nsv233 3 50870215 50901282 OTHER Inversion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv233 S 1 0 0 "" NA15510 nsv234 3 50906550 50940929 OTHER Inversion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv234 S 1 0 0 "" NA15510 nsv10274 3 50907480 50907887 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28873 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18552 nsv3816 3 51414830 51452516 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3096,nssv301 M 9 2 0 "" NA18555,NA19240 nsv508920 3 51442918 51475341 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619327,nssv621200 M 4 2 0 "" NA10860,NA15510 nsv508921 3 51656255 51812129 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621201 S 4 1 0 "" NA15510 nsv520211 3 51747387 52141187 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697283 S 2026 1 0 "" nsv3817 3 51852979 51886097 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3165 S 9 1 0 "" NA12878 nsv508922 3 51949988 52018576 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621202 S 4 1 0 "" NA15510 nsv519445 3 51979357 52342972 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv681602,nssv687073,nssv657083,nssv656217,nssv694993,nssv698511 M 2026 1 5 "" nsv236961 3 52005677 52010432 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255539 M 24 "" nsv508923 3 52045501 52108517 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621203 S 4 1 0 "" NA15510 nsv460537 3 52123273 52265590 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537086 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00684 nsv508218 3 52130909 52265450 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622457 S 4 0 1 "" NA18994 nsv508926 3 52130909 52265450 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621204 S 4 1 0 "" NA15510 nsv834694 3 52154023 52310861 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442816,nssv1442815,nssv1442814 M 95 3 0 "" nsv834695 3 52174741 52375617 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442817 S 95 0 1 "" nsv482084 3 52230138 52235219 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558445 S 1 1 0 "" KB1 nsv834696 3 52292518 52454577 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442824,nssv1442823,nssv1442819,nssv1442820,nssv1442822,nssv1442821 M 95 0 6 "" nsv3818 3 52350942 52380619 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10344 S 9 1 0 "" NA18956 nsv834697 3 52375618 52554457 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442825 S 95 0 1 "" nsv236985 3 52453793 52453864 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255563 M 24 "" nsv3819 3 52472229 52504252 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7009 S 9 1 0 "" NA12156 nsv3820 3 52505587 52539504 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3097 S 9 1 0 "" NA18555 nsv508927 3 52598525 52639459 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621205 S 4 1 0 "" NA15510 nsv508219 3 52716233 52778939 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622458 S 4 0 1 "" NA18994 nsv834698 3 52725023 52903259 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442832,nssv1442835,nssv1442827,nssv1442834,nssv1442833,nssv1442837,nssv1442836,nssv1442826,nssv1442830,nssv1442828,nssv1442831 M 95 11 0 "" nsv508928 3 52778939 52897631 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619328 S 4 1 0 "" NA10860 nsv3822 3 52808871 52841171 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7010 S 9 1 0 "" NA12156 nsv237171 3 52841823 52841823 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255749 M 24 "" nsv3823 3 52978699 53026103 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10345 S 9 0 1 "" NA18956 dgv1457e1 3 52981095 53014495 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1255,essv19149 M 271 0 0 "" NA12812 nsv517046 3 53001754 53021256 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv658304,nssv684602,nssv665804,nssv676994,nssv668479,nssv687564,nssv693316,nssv668252,nssv690513,nssv663047,nssv663444,nssv682206,nssv692360,nssv670918,nssv693438,nssv660019,nssv682027,nssv669691,nssv665713,nssv670759,nssv693859,nssv680456,nssv688370,nssv659482,nssv677409,nssv665082,nssv687767,nssv693264,nssv653982,nssv676506,nssv662796,nssv681004,nssv685072,nssv665320,nssv689291,nssv690499,nssv679065,nssv668181,nssv683564,nssv693340,nssv657890,nssv690592,nssv689885,nssv652402,nssv679503,nssv682576,nssv669836,nssv658530,nssv655815,nssv666596,nssv688594,nssv688962,nssv686981,nssv684212,nssv679845,nssv681897,nssv681447,nssv659877,nssv690633,nssv682179,nssv659921,nssv680801,nssv660402,nssv689149,nssv705756,nssv668927,nssv679545,nssv658801,nssv683471,nssv682466,nssv652369,nssv688400,nssv662688,nssv675991,nssv684536,nssv689044,nssv687219,nssv662889,nssv678814,nssv669220,nssv673853,nssv653060,nssv667506,nssv667800,nssv676812,nssv661388,nssv685585,nssv654525,nssv668639,nssv692613,nssv669905,nssv676782,nssv669360,nssv674372,nssv690571,nssv664291,nssv659360,nssv670367,nssv687012,nssv688866,nssv679175,nssv666764,nssv678401,nssv686425,nssv667109,nssv674955,nssv683676,nssv689100,nssv694037,nssv678678,nssv693382,nssv704518,nssv687976,nssv654480,nssv656592,nssv657596,nssv663030,nssv690983,nssv664510,nssv683241,nssv690535,nssv689116,nssv677987,nssv687110,nssv669098,nssv683692,nssv667626,nssv661050,nssv653906,nssv692756,nssv681167,nssv654080,nssv663951,nssv653684,nssv662280,nssv680559,nssv684197,nssv665734,nssv682382,nssv687672,nssv657348,nssv676797,nssv654645,nssv670695,nssv678536,nssv683956,nssv674389,nssv667603,nssv688244,nssv669054,nssv672449,nssv663969,nssv681942,nssv692066,nssv656126,nssv676717,nssv674496,nssv655829,nssv660493,nssv692582,nssv655040,nssv668617,nssv681650,nssv674611,nssv676664,nssv687823,nssv685797,nssv689802,nssv684911,nssv683226,nssv698759,nssv675128,nssv691609,nssv671752,nssv654904,nssv658952,nssv676614,nssv652966,nssv669853,nssv680860,nssv692408,nssv683307,nssv652074,nssv667774,nssv655121,nssv682784,nssv652981,nssv677219,nssv667181,nssv677172,nssv678761 M 2026 1 190 "" nsv437713 3 53001754 53030562 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467594 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA12801 nsv460538 3 53003023 53010084 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537087 S 1557 0 1 "" 1780862312_A dgv603n27 3 53003023 53013826 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv460545,nsv460546,nsv460547,nsv460549,nsv460540,nsv460543,nsv460544,nsv460552,nsv460541,nsv460542,nsv460548,nsv460551 M 1557 0 12 "" 1780862419_A,HGDP00213,HGDP00524,HGDP00530,HGDP00587,HGDP00662,HGDP00664,HGDP00667,HGDP00672,HGDP01166,HGDP01361,NINDS_115 nsv818140 3 53003023 53013826 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415623,nssv1417975,nssv1418354,nssv1418051,nssv1415884,nssv1416227,nssv1416043,nssv1416338,nssv1415885,nssv1417196,nssv1416042 M 112 0 11 "" NA06985,NA06991,NA07357,NA10861,NA11882,NA11994,NA12239,NA12248,NA12801,NA12812,NA18558 nsv442860 3 53003416 53016559 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv438398 3 53008836 53012735 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv471260,nssv471259 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA12801,NA12812 nsv460553 3 53122616 53174054 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537101 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00433 nsv834699 3 53126916 53300848 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442838 S 95 0 1 "" nsv517233 3 53150597 53296042 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv656747,nssv652669,nssv660457,nssv669562,nssv654081,nssv677479,nssv682709,nssv658352,nssv692851,nssv705763 M 2026 0 10 "" nsv460554 3 53154794 53203959 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537102 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00491 nsv3824 3 53264492 53281469 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7806 S 9 0 1 "" NA12156 nsv3825 3 53295981 53302992 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5968 S 9 1 0 "" NA19129 nsv3826 3 53629002 53660131 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv11060 S 9 1 0 "" NA15510 nsv521276 3 53733363 53734761 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694429 S 2026 0 1 "" nsv520027 3 53737753 53759665 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697185 S 2026 0 1 "" dgv283n21 3 53807943 53857703 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv518466,nsv521181 M 2026 0 2 "" nsv509824 3 53920357 53926357 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623903 S 4 0 1 "" NA18994 nsv523473 3 53985079 54008905 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699233 S 2026 0 1 "" nsv3827 3 54177801 54212726 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv302 S 9 1 0 "" NA19240 nsv518483 3 54187222 54234841 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695922 S 2026 0 1 "" dgv604n27 3 54245686 54268385 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv460556,nsv460555 M 1557 2 0 "" HGDP00703,HGDP00706 nsv527408 3 54346831 54347649 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703845 S 2026 0 1 "" nsv517851 3 54384566 55714400 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695256 S 2026 1 0 "" nsv237564 3 54528088 54528088 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv256142 M 24 "" nsv3828 3 54565735 54599541 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7808 S 9 1 0 "" NA12156 nsv834700 3 54612414 54778936 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442839 S 95 1 0 "" nsv818141 3 54614249 54616608 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418136 S 112 0 1 "" NA19144 nsv525644 3 54628356 54685027 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701798 S 2026 1 0 "" dgv284n21 3 54768490 54778561 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv522779,nsv524822 M 2026 0 2 "" nsv517265 3 54777391 54778561 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv684425,nssv659993,nssv663154,nssv685379,nssv655910,nssv685763,nssv693786,nssv685946,nssv691777,nssv670563,nssv659383,nssv693642,nssv690684,nssv675473,nssv652254,nssv670077,nssv674662,nssv654160,nssv685251,nssv678125,nssv678815,nssv690079,nssv693212,nssv686502,nssv682849,nssv686904,nssv670321,nssv662605,nssv674003,nssv686110,nssv655455,nssv667627,nssv676615,nssv692128,nssv676159,nssv660133,nssv662411,nssv688125 M 2026 0 38 "" nsv3829 3 54956379 54988276 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10346 S 9 1 0 "" NA18956 dgv285n21 3 55037455 55064114 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv527622,nsv516234 M 2026 0 3 "" nsv525110 3 55090093 55420891 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701171 S 2026 0 1 "" nsv528265 3 55112037 55128254 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704833 S 2026 1 0 "" nsv517671 3 55169490 55169996 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv688073,nssv652778 M 2026 0 2 "" nsv523999 3 55316183 55318983 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699859 S 2026 0 1 "" nsv3830 3 55352234 55396566 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2396 S 9 0 1 "" NA18555 dgv1458e1 3 55465669 55640833 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv404,essv4444 M 271 0 0 "" NA18552 nsv520599 3 55611785 55613565 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697512 S 2026 0 1 "" nsv508929 3 55743508 55743508 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618015 S 4 1 0 "" CHM nsv508930 3 55750119 55763687 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619329 S 4 1 0 "" NA10860 nsv3831 3 55759602 55765934 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3166 S 9 1 0 "" NA12878 nsv235 3 55855003 55870149 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv235 S 1 1 0 "" NA15510 nsv3833 3 55855003 55870149 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv11061 S 9 1 0 "" NA15510 nsv509825 3 56114508 56120508 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618572,nssv622026 M 4 0 2 "" CHM,NA10860 nsv509826 3 56128399 56134399 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621553 S 4 0 1 "" NA15510 nsv3834 3 56128445 56139487 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7809 S 9 1 0 "" NA12156 nsv522496 3 56172568 56181631 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705864 S 2026 0 1 "" nsv460557 3 56569775 56636360 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537105 S 1557 0 1 "" 1780854231_A nsv528087 3 56583073 56603071 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704623 S 2026 0 1 "" nsv237149 3 56707962 56713521 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255727 M 24 "" nsv507095 3 56737868 56743868 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621701 S 4 1 0 "" NA10860 nsv523538 3 56824745 56832827 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699314 S 2026 0 1 "" nsv515842 3 56866486 56871425 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv692875,nssv687872,nssv666559,nssv664988,nssv656405,nssv665228,nssv692264,nssv662689,nssv661417 M 2026 0 9 "" nsv509827 3 56974328 56980328 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618573 S 4 0 1 "" CHM nsv3835 3 57138629 57183416 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7810 S 9 0 1 "" NA12156 nsv3836 3 57299476 57314028 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2397 S 9 1 0 "" NA18555 nsv508931 3 57361254 57375406 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619330,nssv623372,nssv621206,nssv618016 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv460558 3 57387667 57432480 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537106 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00828 dgv286n21 3 57418857 57474809 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv525476,nsv519351 M 2026 0 2 "" nsv515675 3 57448790 57450804 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv657102,nssv667449,nssv669385,nssv669307,nssv664337,nssv689919 M 2026 0 6 "" nsv834701 3 57601664 57793670 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442841 S 95 0 1 "" nsv528147 3 57890514 58345217 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704694 S 2026 1 0 "" nsv818142 3 57932080 57954807 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417473 S 112 0 1 "" NA18960 nsv441823 3 57933869 57952991 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv3837 3 57977914 58005928 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7011 S 9 1 0 "" NA12156 nsv834703 3 58033558 58259537 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442842 S 95 1 0 "" nsv3838 3 58312870 58347484 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv303 S 9 1 0 "" NA19240 nsv3839 3 58480662 58525739 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5969,nssv7811 M 9 0 2 "" NA12156,NA19129 nsv520486 3 58481890 58491423 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv671812,nssv677306 M 2026 2 0 "" nsv528342 3 58509166 58518552 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704924 S 2026 1 0 "" nsv524472 3 58528200 58533809 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700410 S 2026 1 0 "" nsv460560 3 58589056 58617492 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537107 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00774 nsv3840 3 58628928 58674189 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7812 S 9 0 1 "" NA12156 nsv834704 3 58662518 58812691 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442843 S 95 0 1 "" nsv834705 3 59216540 59383634 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442844 S 95 1 0 "" nsv523534 3 59234083 59263255 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699309 S 2026 0 1 "" nsv528810 3 59237230 59282765 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705484 S 2026 1 0 "" nsv3841 3 59476129 59509279 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3167 S 9 1 0 "" NA12878 nsv834706 3 59513191 59711054 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442845 S 95 1 0 "" nsv3842 3 59745917 59775497 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3168 S 9 1 0 "" NA12878 nsv460563 3 59747382 59802430 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537109 S 1557 1 0 "" NINDS_206 nsv460564 3 59796111 59902767 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537110 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01203 nsv460565 3 59817684 59853028 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537111 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00994 nsv507096 3 59878894 59884894 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620761 S 4 1 0 "" NA15510 nsv528597 3 59936554 59938171 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705223 S 2026 0 1 "" nsv834707 3 59980719 60159086 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442846 S 95 1 0 "" dgv287n21 3 60034081 60039336 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv520108,nsv523496 M 2026 0 2 "" nsv519729 3 60037694 60039336 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv657939,nssv674612 M 2026 0 2 "" dgv178e55 3 60042436 60263468 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv2752011,esv2752010 M 771 0 2 "" BEC_759,SPC_113 nsv519855 3 60043770 60251762 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv685618,nssv692820,nssv672682,nssv659103,nssv683006,nssv684337 M 2026 0 6 "" nsv834708 3 60131131 60280492 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442847 S 95 0 1 "" esv2422232 3 60167241 60309595 CNV Deletion Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161291 S 181 0 1 "" ND02645 nsv517248 3 60268044 60270121 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv685124,nssv671968,nssv684151,nssv686362,nssv656478,nssv669436,nssv685340,nssv663445,nssv680674,nssv688934,nssv656127,nssv665293,nssv682439,nssv684759,nssv677341,nssv654888,nssv679665,nssv657480,nssv655973,nssv677835,nssv660403,nssv689735,nssv683053,nssv671269,nssv681668,nssv667848,nssv690611,nssv676964,nssv657904,nssv654813,nssv664475,nssv664411,nssv692409,nssv670288,nssv660494,nssv666136,nssv657848,nssv686960,nssv690080,nssv668360,nssv669606,nssv654120,nssv681555,nssv652105,nssv693265,nssv667430,nssv691738 M 2026 0 47 "" nsv519353 3 60285830 60392143 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696807 S 2026 0 1 "" nsv3844 3 60318300 60349155 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3169 S 9 1 0 "" NA12878 nsv520224 3 60360805 60383444 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697291 S 2026 0 1 "" nsv460569 3 60363362 60620174 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537112 S 1557 1 0 "" 1782681329_A nsv460570 3 60393402 60440179 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537113 S 1557 0 1 "" NINDS_134 nsv526066 3 60407332 60416119 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702306 S 2026 0 1 "" nsv522508 3 60407332 60423301 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705876 S 2026 0 1 "" nsv524767 3 60413066 60506282 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700758 S 2026 0 1 "" nsv834709 3 60493290 60651549 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442848 S 95 1 0 "" nsv507097 3 60509474 60515474 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622854 S 4 1 0 "" NA18994 nsv460573 3 60515705 60704155 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537115 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00134 nsv520671 3 60564450 60576093 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697549 S 2026 0 1 "" nsv3845 3 60589837 60623247 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5970 S 9 1 0 "" NA19129 dgv1459e1 3 60650681 60689812 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv12067,esv932 M 271 0 0 "" NA19238 nsv518490 3 60696818 60697675 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695929 S 2026 0 1 "" nsv3846 3 60729284 60774540 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7813 S 9 0 1 "" NA12156 dgv1460e1 3 60756983 61016168 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv24815,essv24600 M 271 0 0 "" NA10860,NA11992 esv561 3 60756983 61195849 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent + Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 "" essv12872 3 60775739 60919051 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18502 dgv1461e1 3 60792362 60896747 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv21367,essv22249 M 271 0 0 "" NA10860,NA11992 nsv437724 3 60798055 60892873 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467605 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA10860 nsv437861 3 60801472 60878151 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv471264,nssv471267,nssv471263,nssv471266,nssv471265,nssv471261,nssv471262,nssv471269 M 269 0 3 Samples from several populations that are part of the HapMap project. "" NA10835,NA10860,NA11992 nsv818143 3 60804042 60882939 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415824,nssv1415825 M 112 0 2 "" NA10860,NA11992 dgv179e55 3 60804420 60883100 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv34507,esv34469 M 771 0 2 "" NA10860,NA11992 esv2752012 3 60894434 60991079 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6982927,essv6982926,essv6982925 M 771 1 0 "" BEC_527 esv34680 3 60958320 61028019 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6979797,essv6979798,essv6988246 M 771 0 1 "" NA18632 essv7665 3 60968955 61027682 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18632 nsv834710 3 60970671 61123197 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442849 S 95 1 0 "" essv5509 3 60971918 61160598 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18632 nsv460574 3 61015324 61029385 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537116 S 1557 0 1 "" 1780862085_A essv6074 3 61039472 61094963 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18621 nsv10275 3 61102103 61103744 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28803 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA10863 nsv10276 3 61114254 61117051 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28913 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19007 essv22719 3 61119467 61195849 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12239 nsv527725 3 61133463 61135266 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704206 S 2026 0 1 "" nsv834711 3 61388802 61587579 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442853,nssv1442850 M 95 0 2 "" dgv1462e1 3 61544597 61611196 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv3613,esv1382 M 271 0 0 "" NA18969 esv35004 3 61545189 61601466 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6987038,essv6980215,essv6980216 M 771 1 0 "" NA18969 nsv834712 3 61587580 61745272 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442854 S 95 1 0 "" nsv236686 3 61635225 61637170 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255264 M 24 "" nsv471782 3 61641418 61641818 CNV Loss Hinds et al 2006 16327809 Oligo_aCGH,PCR Custom Perlegen arrays nssv646063 M 1.002 95 "" nsv516255 3 61806570 61809982 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv685947,nssv667094 M 2026 0 2 "" nsv523876 3 61806570 61819146 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699718 S 2026 0 1 "" nsv517920 3 61917106 61924499 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695331 S 2026 0 1 "" nsv460575 3 61987727 62019648 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537117 S 1557 1 0 "" 1780862586_A nsv437862 3 62153778 62157696 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv471272,nssv471271,nssv471270 M 269 0 3 Samples from several populations that are part of the HapMap project. "" NA18576,NA18960,NA18980 nsv522606 3 62164229 62173375 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705998 S 2026 0 1 "" nsv437330 3 62580981 62587320 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467211 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19202 nsv471783 3 62585615 62587124 CNV Loss Hinds et al 2006 16327809 Oligo_aCGH,PCR Custom Perlegen arrays nssv646064 M 0.170 95 "" dgv605n27 3 62585665 62587053 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv460578,nsv460577 M 1557 0 2 "" HGDP00908,HGDP01255 nsv517351 3 62585665 62587053 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv692350,nssv669251,nssv654013,nssv669160,nssv657504,nssv685821,nssv670419,nssv691807,nssv681338,nssv668593,nssv692084,nssv671855,nssv666926,nssv664785,nssv653341,nssv659994,nssv657968,nssv674907,nssv657940,nssv663007,nssv682097,nssv669321,nssv672218,nssv661690,nssv664338,nssv669756,nssv659638,nssv665418,nssv662541,nssv659436,nssv686230,nssv689269,nssv661282,nssv681743,nssv693912,nssv692714,nssv689587,nssv689401,nssv682420,nssv664066,nssv654407,nssv666351,nssv679089,nssv678868,nssv686340,nssv655099,nssv655942,nssv657400,nssv675549,nssv663174,nssv678576,nssv674807,nssv673795,nssv691068,nssv684652,nssv658643,nssv665825,nssv667127,nssv677676,nssv658128,nssv684404,nssv676267,nssv684302,nssv689920,nssv685051,nssv673971,nssv674691,nssv659579,nssv680194,nssv683627,nssv674314,nssv693697,nssv671647,nssv666654,nssv684230,nssv693233,nssv658680,nssv662361,nssv669197,nssv679322,nssv658458,nssv653832,nssv663707,nssv689045,nssv688208,nssv686604,nssv665540,nssv679879,nssv654593,nssv654731,nssv673409,nssv669308,nssv663902,nssv685696,nssv684760,nssv658333,nssv687615,nssv685735,nssv678279,nssv693064,nssv656517,nssv662969,nssv658024,nssv690685,nssv653830,nssv671783,nssv652180,nssv686241,nssv656657,nssv671446,nssv687590,nssv680156,nssv690162,nssv675945,nssv686532,nssv662822,nssv685713,nssv688268,nssv659722,nssv691878,nssv662001,nssv658505,nssv687968,nssv673538,nssv665750,nssv667364,nssv678056,nssv662172,nssv679647,nssv670374,nssv664233 M 2026 0 131 "" nsv818144 3 62585665 62587053 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416536,nssv1416836,nssv1418138,nssv1416712,nssv1416713 M 112 0 5 "" NA19145,NA19159,NA19161,NA19171,NA19239 nsv460579 3 62625164 62635875 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537120 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01182 nsv437331 3 62633191 62674240 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467212 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18503 nsv516380 3 62640320 62671607 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv692876,nssv678014,nssv667919,nssv678077,nssv686934,nssv681168,nssv676118,nssv672741,nssv686112 M 2026 0 9 "" nsv460580 3 62682559 62689349 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537121 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00932 dgv72n17 3 62685389 62691840 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437332,nsv437333 M 60 0 2 "" NA18500,NA18872 nsv10277 3 62686130 62692157 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28825 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19144 nsv517777 3 62686342 62689349 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv656981,nssv653213,nssv680487,nssv659755,nssv656406,nssv698604,nssv687616,nssv661022,nssv677875,nssv678197,nssv665364,nssv663131,nssv692614,nssv658129,nssv669514,nssv686453,nssv675265,nssv677536,nssv693384,nssv692332,nssv666521,nssv689402,nssv677925,nssv670168,nssv696588,nssv664317,nssv654481 M 2026 0 27 "" nsv818146 3 62686342 62689349 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418139,nssv1416714,nssv1416430,nssv1418140 M 112 0 4 "" NA18516,NA19144,NA19145,NA19160 nsv441824 3 62687720 62690900 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv520303 3 62916288 62917498 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv662701,nssv678247 M 2026 0 2 "" esv33787 3 62935097 62967478 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101605 S 51 0 1 "" 21603 nsv520977 3 62943547 62968123 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv687055,nssv679129,nssv705286,nssv690003 M 2026 0 4 "" dgv76n68 3 62980387 63203963 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH nsv834715,nsv834714 M 95 2 0 "" nsv441825 3 63108165 63110809 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv523825 3 63108344 63110118 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699656 S 2026 0 1 "" nsv236434 3 63109898 63110350 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255012 M 24 "" nsv516411 3 63110118 63118747 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv656861,nssv668182,nssv691851 M 2026 0 3 "" nsv3847 3 63112949 63130828 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9619 S 9 1 0 "" NA18507 dgv117n6 3 63231571 63231689 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv237011,nsv237573 M 24 "" esv2422509 3 63476509 63624979 CNV Deletion Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161261 S 181 0 1 "" ND04575 nsv3848 3 63509834 63542938 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7814 S 9 1 0 "" NA12156 nsv834716 3 63538598 63748687 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442857 S 95 0 1 "" nsv3849 3 63593507 63627575 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7815 S 9 1 0 "" NA12156 nsv460581 3 63615641 63648374 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537122 S 1557 0 1 "" NINDS_112 nsv520563 3 63648374 63648835 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv677342,nssv672555 M 2026 0 2 "" nsv509828 3 63853994 63859994 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623904 S 4 0 1 "" NA18994 esv32871 3 63873885 63874334 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100796 S 51 0 1 "" 21656 nsv3850 3 63901108 63946341 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7817 S 9 0 1 "" NA12156 nsv834717 3 64047616 64225944 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442858 S 95 1 0 "" nsv522355 3 64067903 64074609 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695134 S 2026 0 1 "" dgv288n21 3 64086759 64090487 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv525140,nsv527557 M 2026 0 2 "" nsv518137 3 64125246 64146794 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695556 S 2026 0 1 "" nsv528206 3 64135169 64146794 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704767 S 2026 0 1 "" nsv515640 3 64136278 64146794 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv664203,nssv661155 M 2026 2 0 "" nsv3851 3 64139851 64184763 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7818 S 9 0 1 "" NA12156 nsv3852 3 64265111 64299679 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv304 S 9 1 0 "" NA19240 dgv289n21 3 64331371 64544123 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv519887,nsv522703 M 2026 2 0 "" nsv834718 3 64525493 64719594 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442859 S 95 1 0 "" nsv523418 3 64726782 64730279 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699171 S 2026 0 1 "" nsv509829 3 64731184 64737184 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623905,nssv618574 M 4 0 2 "" CHM,NA18994 nsv3853 3 64913222 64947180 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7819 S 9 1 0 "" NA12156 dgv1463e1 3 64922928 64933281 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1410,essv14022 M 271 0 0 "" NA18862 nsv460582 3 64996986 65052516 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537123 S 1557 0 1 "" 1780854599_A dgv290n21 3 65057407 65058099 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv528388,nsv522739 M 2026 0 2 "" nsv507098 3 65064797 65070797 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617601,nssv621702 M 4 2 0 "" CHM,NA10860 nsv471784 3 65092929 65094629 CNV Loss Hinds et al 2006 16327809 Oligo_aCGH,PCR Custom Perlegen arrays nssv646065 M 0.125 95 "" dgv606n27 3 65151156 65190844 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv460586,nsv460584,nsv460596,nsv460587,nsv460591,nsv460588,nsv460589,nsv460593,nsv460590,nsv460595,nsv460585,nsv460592 M 1557 0 12 "" 1780854063_A,1780854096_A,1780854197_A,1780854340_A,1780854362_A,1780862388_A,1782681144_A,1798860280_A,HGDP00533,HGDP01310,NINDS_70,NINDS_83 dgv1464e1 3 65151156 65199576 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1060,essv23635 M 271 0 0 "" NA07055 nsv516641 3 65154959 65187636 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv669221,nssv668640,nssv669563,nssv678372,nssv657006,nssv652076,nssv652255,nssv658190,nssv660020,nssv658842,nssv667604,nssv675201,nssv685147,nssv652538,nssv674732,nssv683484,nssv682946,nssv667031,nssv677480,nssv691778,nssv689629,nssv657384,nssv675317,nssv657539,nssv661448,nssv677700,nssv669778,nssv663737,nssv682028,nssv669361,nssv654631,nssv661475,nssv686006,nssv657955,nssv687778,nssv678126,nssv652982,nssv674205,nssv682829,nssv677133,nssv689246,nssv653437,nssv654781,nssv661934,nssv654763,nssv690291,nssv687220,nssv672031,nssv666721,nssv678033,nssv683172,nssv680978,nssv678226,nssv655994,nssv661845,nssv682757,nssv660475,nssv684912,nssv681005,nssv682563,nssv681470,nssv680802,nssv667431,nssv670857,nssv653261,nssv654849,nssv671753,nssv655529,nssv684081,nssv669409,nssv680215,nssv663427,nssv689150,nssv688963,nssv682933,nssv666678,nssv670454,nssv668412,nssv654864,nssv678351,nssv655816,nssv693609,nssv680114,nssv662717,nssv684479,nssv656479,nssv667628,nssv685017,nssv660413,nssv683054,nssv665101,nssv662632,nssv656218,nssv662513,nssv692902,nssv660597,nssv683346,nssv680918,nssv661570,nssv662412,nssv682770,nssv684198,nssv675297,nssv688747,nssv655911,nssv679955,nssv692410,nssv673657,nssv690514,nssv661544,nssv684603,nssv683751,nssv659922,nssv675215,nssv673854,nssv697328,nssv664204,nssv686404,nssv684105,nssv687074,nssv663784,nssv673242,nssv684492,nssv678557,nssv684184,nssv692676,nssv658110,nssv669808,nssv669607,nssv681700,nssv693038,nssv691207,nssv676718,nssv682137,nssv654102,nssv689901,nssv675746,nssv682467,nssv678970,nssv666765,nssv653275,nssv686265,nssv677645,nssv678174,nssv659177,nssv687800,nssv690572,nssv654430,nssv667883,nssv691679,nssv690704,nssv671131,nssv692692,nssv673487,nssv651849,nssv680296,nssv654544,nssv656449,nssv656951,nssv653547,nssv689101,nssv676783,nssv653191,nssv656031,nssv682154,nssv680598,nssv683214 M 2026 0 167 "" dgv46n64 3 65159939 65190844 CNV Loss Wang_et_al_2007 17921354 SNP_array nsv818147,nsv818148 M 112 0 2 "" NA12056,NA12750 dgv73n17 3 65159939 65193676 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437768,nsv437746,nsv437735,nsv437757 M 60 0 4 "" NA07048,NA10835,NA10857,NA12878 dgv1465e1 3 65161278 65199576 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv18693,essv2564,essv24114,essv18527,essv4217,essv7515,essv17859,essv18798,essv3607,essv23103,essv2722,essv19472,essv19374,essv4098,essv17685 M 271 0 0 "" NA07019,NA07048,NA10835,NA10857,NA12043,NA12056,NA12248,NA12750,NA12763,NA18529,NA18532,NA18609,NA18944,NA18969,NA18974 nsv10278 3 65163123 65190581 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv29160 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA07048 nsv442861 3 65164275 65185492 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" esv33912 3 65164446 65189705 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100877,essv101065,essv92628,essv99353,essv97741,essv98520 M 51 0 6 "" 21656,21693,22233,22275,22278,22352 dgv1466e1 3 65164684 65193708 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv21645,essv18013,essv18794,essv24183 M 271 0 0 "" NA07056,NA12761,NA12878,NA12891 nsv818149 3 65166887 65187636 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415624,nssv1416605,nssv1416140,nssv1417091,nssv1416594,nssv1416141,nssv1418355,nssv1417368,nssv1415625,nssv1417336 M 112 0 10 "" NA10835,NA10857,NA12043,NA12146,NA12248,NA12878,NA12891,NA18529,NA18609,NA18944 nsv433215 3 65166887 65189573 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463096 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA12878 nsv517804 3 65166887 65190844 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695208 S 2026 1 0 "" dgv607n27 3 65166887 65193708 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv460625,nsv460687,nsv460615,nsv460606,nsv460600,nsv460670,nsv460658,nsv460691,nsv460657,nsv460669,nsv460688,nsv460621,nsv460632,nsv460601,nsv460643,nsv460650,nsv460682,nsv460679,nsv460628,nsv460631,nsv460627,nsv460668,nsv460674,nsv460602,nsv460603,nsv460690,nsv460660,nsv460611,nsv460681,nsv460613,nsv460598,nsv460624,nsv460610,nsv460649,nsv460638,nsv460680,nsv460646,nsv460597,nsv460623,nsv460664,nsv460672,nsv460685,nsv460609,nsv460636,nsv460655,nsv460666,nsv460635,nsv460637,nsv460612,nsv460689,nsv460639,nsv460675,nsv460676,nsv460671,nsv460654,nsv460622,nsv460619,nsv460683,nsv460641,nsv460633,nsv460647,nsv460599,nsv460678,nsv460626,nsv460677,nsv460604,nsv460634,nsv460645,nsv460614,nsv460607,nsv460620,nsv460608,nsv460644,nsv460667,nsv460656,nsv460648,nsv460659,nsv460665,nsv460663,nsv460686,nsv460661,nsv460630,nsv460642 M 1557 0 83 "" 1780854038_A,1780854061_A,1780854079_A,1780854105_A,1780854127_A,1780854130_A,1780854158_A,1780854216_A,1780854391_A,1780854441_A,1780854465_A,1780854480_A,1780854524_A,1780854540_A,1780862021_A,1780862041_A,1780862108_A,1780862126_A,1780862195_A,1780862384_A,1780862443_A,1780862444_A,1780862459_A,1780862469_A,1780862587_A,1780862590_A,1782681219_A,1782681237_A,1782681286_A,1782681294_A,1782681296_A,1782681316_A,1798860047_A,1798860102_A,1798860191_A,1798860594_A,HGDP00029,HGDP00056,HGDP00070,HGDP00131,HGDP00165,HGDP00237,HGDP00251,HGDP00288,HGDP00356,HGDP00412,HGDP00524,HGDP00604,HGDP00625,HGDP00646,HGDP00747,HGDP00749,HGDP00800,HGDP00805,HGDP00807,HGDP00889,HGDP00890,HGDP01099,HGDP01300,HGDP01350,HGDP01400,NINDS_12,NINDS_127,NINDS_129,NINDS_130,NINDS_139,NINDS_169,NINDS_172,NINDS_173,NINDS_232,NINDS_241,NINDS_259,NINDS_34,NINDS_43,NINDS_53,NINDS_57,NINDS_64,NINDS_69,NINDS_71,NINDS_73,NINDS_79,NINDS_84,NINDS_93 dgv608n27 3 65171163 65190844 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv460692,nsv460693 M 1557 0 2 "" HGDP00882,HGDP00901 nsv437863 3 65173579 65187319 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv471280,nssv471278,nssv471275,nssv471276,nssv471274,nssv471277,nssv471281,nssv471273 M 269 0 6 Samples from several populations that are part of the HapMap project. "" NA07048,NA07055,NA10835,NA10857,NA12043,NA12248 nsv526866 3 65226351 65229767 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703224 S 2026 1 0 "" nsv526343 3 65476689 65511169 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702635 S 2026 0 1 "" nsv460696 3 65490653 65527054 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537233 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00644 nsv526223 3 65505873 65519292 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702489 S 2026 0 1 "" nsv3856 3 65515400 65532559 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7820 S 9 1 0 "" NA12156 nsv3857 3 65676663 65707174 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2398 S 9 1 0 "" NA18555 nsv507099 3 65819162 65825162 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621703 S 4 1 0 "" NA10860 nsv460697 3 65821965 65898780 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537234 S 1557 0 1 "" 1780862161_A nsv507100 3 65855031 65861031 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621704,nssv622855,nssv617602 M 4 3 0 "" CHM,NA10860,NA18994 nsv3858 3 65899696 65929912 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3170 S 9 0 1 "" NA12878 nsv522932 3 65965830 65967317 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698595 S 2026 0 1 "" nsv237683 3 66024301 66024614 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv256261 M 24 "" nsv528820 3 66408992 66461689 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705494 S 2026 0 1 "" nsv516847 3 66510972 66520646 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv684736,nssv654408 M 2026 0 2 "" nsv237304 3 66516781 66516831 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255882 M 24 "" nsv236600 3 66809236 66809236 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255178 M 24 "" esv2752013 3 66889884 66966800 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6984807,essv6984808,essv6987689 M 771 1 0 "" SPC_180 nsv460699 3 66999473 67023104 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537235 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01163 nsv526867 3 67014078 67023104 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703225 S 2026 0 1 "" nsv508220 3 67133916 67142258 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620208 S 4 0 1 "" NA15510 nsv3859 3 67454723 67486094 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5971 S 9 1 0 "" NA19129 nsv460700 3 67476319 67795660 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537236 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00649 nsv834719 3 67479316 67672542 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442860 S 95 1 0 "" nsv519439 3 67533261 67534733 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696855 S 2026 0 1 "" nsv508221 3 67569930 67592119 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617475,nssv622460 M 4 0 2 "" CHM,NA18994 nsv3860 3 67575976 67600631 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3171 S 9 0 1 "" NA12878 nsv508222 3 67687578 67695863 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620209 S 4 0 1 "" NA15510 nsv834720 3 67935857 68119891 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442861 S 95 1 0 "" nsv507101 3 68014775 68020775 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620762,nssv622856,nssv621705,nssv617603 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv3861 3 68161947 68215200 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7821,nssv306 M 9 2 0 "" NA12156,NA19240 nsv437864 3 68173501 68175525 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv471282,nssv471283 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA18940,NA18967 esv2752014 3 68174569 68499679 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6980740,essv6980741,essv6990521,essv6986061 M 771 1 0 "" BEC_126 nsv834721 3 68448653 68609084 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442862 S 95 1 0 "" nsv508223 3 68686320 68728045 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617476,nssv620210,nssv622461 M 4 0 3 "" CHM,NA15510,NA18994 nsv3862 3 68690702 68736253 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10347,nssv5972,nssv2399,nssv3172 M 9 0 4 "" NA12878,NA18555,NA18956,NA19129 nsv3863 3 68803611 68851754 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5973,nssv3173,nssv10348,nssv9620,nssv11062,nssv307,nssv2400 M 9 0 7 "" NA12878,NA15510,NA18507,NA18555,NA18956,NA19129,NA19240 nsv508224 3 68807218 68845666 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620211,nssv622462,nssv617477,nssv618713 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv236 3 68816561 68840034 CNV Loss Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv236 S 1 0 1 "" NA15510 nsv10279 3 68818894 68831609 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28882,nssv12128,nssv11699,nssv11892,nssv29101,nssv28709,nssv28973,nssv28430,nssv28954,nssv28190,nssv28903,nssv28872,nssv12021,nssv29190,nssv29211,nssv28588 M 31 4 12 Samples from several populations that are part of the HapMap project. "" NA07048,NA10839,NA11830,NA12155,NA12802,NA12872,NA18502,NA18537,NA18552,NA18572,NA18853,NA18860,NA18975,NA18980,NA19007,NA19173 nsv834722 3 68857726 69056810 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442864 S 95 1 0 "" dgv1467e1 3 68971420 69018486 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1076,essv14207,essv13509 M 271 0 0 "" NA18913,NA18914 nsv236602 3 68972906 68973196 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255180 M 24 "" nsv525701 3 68985771 69008468 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701861 S 2026 1 0 "" nsv237873 3 69143048 69147048 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv256451 M 24 "" nsv520488 3 69187442 69196695 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv687300,nssv671813 M 2026 0 2 "" nsv521439 3 69254493 69268430 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698049 S 2026 0 1 "" nsv237526 3 69347152 69348270 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv256104 M 24 "" nsv3864 3 69406565 69441936 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv308 S 9 1 0 "" NA19240 nsv520818 3 69483938 69504185 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697629 S 2026 0 1 "" nsv237596 3 69499343 69499392 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv256174 M 24 "" nsv237604 3 69499442 69499491 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv256182 M 24 "" nsv834723 3 69726331 69894291 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442865 S 95 1 0 "" nsv237409 3 69925335 69925335 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255987 M 24 "" nsv507102 3 70146719 70152719 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621706,nssv617604,nssv620763 M 4 3 0 "" CHM,NA10860,NA15510 nsv437334 3 70273498 70276298 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467215 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19139 nsv834725 3 70282361 70478474 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442866 S 95 1 0 "" nsv834726 3 70362580 70546932 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442867 S 95 1 0 "" nsv507103 3 70379354 70385354 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617605,nssv621707,nssv620764,nssv622857 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv3865 3 70409598 70454799 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7822 S 9 0 1 "" NA12156 nsv527225 3 70488165 70509757 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703625 S 2026 0 1 "" nsv3867 3 70563048 70608087 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7823 S 9 0 1 "" NA12156 nsv523369 3 70690895 70699427 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699118 S 2026 0 1 "" nsv3868 3 70834044 70858771 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10349,nssv3098 M 9 2 0 "" NA18555,NA18956 nsv3869 3 70966648 70985784 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7824 S 9 0 1 "" NA12156 nsv834727 3 71015949 71190722 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442868 S 95 0 1 "" nsv3870 3 71022925 71055448 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10350 S 9 1 0 "" NA18956 nsv834728 3 71167286 71364374 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442869 S 95 0 1 "" nsv523960 3 71228520 71235800 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699810 S 2026 0 1 "" nsv524874 3 71349575 71353478 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700879 S 2026 0 1 "" nsv525539 3 71349575 71356534 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701675 S 2026 1 0 "" nsv525748 3 71399279 71404917 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701915 S 2026 0 1 "" nsv237399 3 71459160 71459160 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255977 M 24 "" nsv508932 3 71550283 71574714 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619331,nssv621208,nssv623374 M 4 3 0 "" NA10860,NA15510,NA18994 nsv3871 3 71600121 71645527 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7012 S 9 0 1 "" NA12156 nsv3872 3 71690692 71724713 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3174 S 9 1 0 "" NA12878 nsv834729 3 71749193 71826832 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442870,nssv1442871 M 95 0 2 "" nsv524847 3 71877097 71904180 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700849 S 2026 0 1 "" nsv460702 3 71988566 72012953 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537237 S 1557 0 1 "" 1780854557_A nsv523699 3 72398646 72400160 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699506 S 2026 0 1 "" nsv526437 3 72454215 72461423 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702740 S 2026 0 1 "" nsv515782 3 72459498 72461640 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv664760,nssv670858,nssv701232 M 2026 0 3 "" dgv118n6 3 72462401 72462712 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv237827,nsv237576 M 24 "" nsv441827 3 72651057 72655335 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv3873 3 72930814 72975743 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7826 S 9 0 1 "" NA12156 nsv523229 3 72963160 73014098 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698952 S 2026 0 1 "" nsv3874 3 72965725 72999817 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3099 S 9 1 0 "" NA18555 nsv3875 3 73044008 73088691 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7827 S 9 0 1 "" NA12156 nsv238064 3 73150294 73150294 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv256642 M 24 "" nsv528982 3 73174137 73214041 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705681 S 2026 1 0 "" nsv460703 3 73177645 73226780 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537238 S 1557 0 1 "" 1780862565_A nsv3876 3 73419551 73464565 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5974 S 9 0 1 "" NA19129 nsv834730 3 73471190 73640283 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442872,nssv1442873 M 95 0 2 "" nsv834731 3 73561124 73736485 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442875 S 95 1 0 "" nsv520326 3 73571360 73572601 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694375 S 2026 0 1 "" nsv525749 3 73613013 73618281 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701916 S 2026 0 1 "" nsv236186 3 73623447 73624825 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv254764 M 24 "" nsv3878 3 73656696 73688889 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3175 S 9 1 0 "" NA12878 nsv526832 3 73695639 74864440 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703189 S 2026 1 0 "" nsv3879 3 73789448 73826113 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7828 S 9 0 1 "" NA12156 nsv834732 3 73854958 74025996 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442876 S 95 1 0 "" nsv527044 3 73935508 73937361 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703420 S 2026 1 0 "" nsv237826 3 73988912 73988964 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv256404 M 24 "" dgv291n21 3 74044215 74050975 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv526351,nsv519684 M 2026 2 0 "" nsv527242 3 74064463 74065597 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703644 S 2026 0 1 "" nsv834733 3 74229979 74449437 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442879,nssv1442878,nssv1442880,nssv1442877 M 95 0 4 "" nsv441828 3 74230849 74234561 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv516154 3 74233758 74236974 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv678816,nssv666522 M 2026 0 2 "" nsv3880 3 74277771 74322823 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7829 S 9 0 1 "" NA12156 nsv520967 3 74280502 74285655 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705201,nssv693152,nssv678950 M 2026 0 3 "" nsv236767 3 74298070 74298070 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255345 M 24 "" nsv834734 3 74502838 74637825 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442881 S 95 0 1 "" nsv526012 3 74504266 74507007 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702240 S 2026 0 1 "" nsv527913 3 74707813 74717787 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704419 S 2026 0 1 "" nsv516665 3 74711925 74717787 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv670012,nssv661370,nssv662150 M 2026 0 3 "" nsv3881 3 74897554 74927892 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3176 S 9 1 0 "" NA12878 nsv834736 3 75165745 75354148 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442882 S 95 1 0 "" nsv460704 3 75311063 75404933 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537239 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00160 esv2422240 3 75326969 75678623 CNV Deletion Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161389 S 181 0 1 "" ND01708 esv2422315 3 75332778 75935986 CNV Deletion Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161481 S 181 0 1 "" ND00723 dgv1468e1 3 75428849 75779859 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv24203,essv24549,essv19813,essv19588,essv24012 M 271 0 0 "" NA11831,NA12144,NA12864,NA12873 esv614 3 75428849 76935064 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent + Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 "" nsv10280 3 75432910 75440394 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28749 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18853 nsv508933 3 75435172 75568856 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623375,nssv619332,nssv621209 M 4 3 0 "" NA10860,NA15510,NA18994 nsv529016 3 75444196 75919548 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705727 S 2026 1 0 "" nsv3882 3 75448992 75481371 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10351 S 9 1 0 "" NA18956 nsv517173 3 75461775 75730577 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv669282,nssv652403,nssv675888,nssv652803,nssv657210,nssv679764,nssv671784,nssv677854,nssv691312,nssv667661,nssv652370,nssv674956,nssv655912,nssv677561,nssv674613,nssv687565,nssv685648,nssv658754,nssv655888,nssv672683,nssv654261,nssv675734,nssv663970,nssv662111,nssv682629,nssv687673,nssv691610,nssv698829,nssv667689,nssv701350,nssv666289,nssv679504,nssv685228,nssv663192,nssv668278,nssv688126,nssv685380,nssv661637,nssv676301,nssv671418,nssv657025,nssv678259,nssv692635,nssv659923,nssv686566,nssv681023,nssv688074,nssv684134,nssv676665,nssv657349,nssv681814,nssv654137,nssv699147,nssv687852,nssv652480,nssv684975,nssv673452,nssv663801,nssv677794,nssv669692,nssv663048,nssv653983,nssv670590,nssv659371,nssv653927,nssv670890,nssv671325,nssv681535,nssv668135,nssv653313,nssv652077,nssv654184,nssv684785,nssv657168,nssv665018,nssv670785,nssv685745,nssv661476,nssv663903,nssv679925,nssv652222,nssv680656,nssv684152,nssv681260,nssv655775,nssv683227,nssv655830,nssv687755,nssv690483,nssv678330,nssv656128,nssv679666,nssv676016,nssv693837,nssv660693,nssv670696,nssv687728,nssv690959,nssv664614,nssv656263,nssv659178,nssv664532,nssv678912,nssv667920,nssv705296,nssv667713,nssv654828,nssv688345,nssv668958,nssv659278 M 2026 1 109 "" dgv609n27 3 75470851 75650909 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv460709,nsv460708,nsv460710,nsv460705,nsv460711,nsv460712,nsv460707 M 1557 0 7 "" 1780854483_A,1780854573_A,1798860443_A,1798860565_A,HGDP00902,HGDP01362,NINDS_36 dgv180e55 3 75474768 75722600 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv35065,esv2752016 M 771 0 2 "" BEC_496,NA12864 dgv181e55 3 75475063 75858773 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv2752017,esv2752018 M 771 0 2 "" BEC_540,SPC_178 dgv1469e1 3 75475063 76006154 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv7885,essv23098 M 271 0 0 "" NA12043,NA19140 dgv1470e1 3 75476955 75722584 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv20508,essv19331,essv5628 M 271 0 0 "" NA12716,NA12872,NA18579 nsv442862 3 75509797 75627866 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv818150 3 75511365 75650909 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416616 S 112 0 1 "" NA12043 nsv469693 3 75520326 75670960 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649625 M 265 0 22 Samples from several populations that are part of the HapMap project. "" nsv3883 3 75523617 75554840 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2401,nssv10352,nssv5975,nssv309,nssv7013,nssv11063,nssv3177 M 9 7 0 "" NA12156,NA12878,NA15510,NA18555,NA18956,NA19129,NA19240 nsv10281 3 75531364 75544125 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28470 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA12872 nsv237 3 75543330 75551153 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv237 S 1 1 0 "" NA15510 nsv818151 3 75588740 75613585 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418257 S 112 1 0 "" NA19093 nsv460713 3 75588740 75650909 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537248 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00525 dgv1471e1 3 75591666 75858773 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv15966,essv18483,essv16189 M 271 0 0 "" NA12156,NA18506,NA19142 essv16595 3 75621533 75795694 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18860 nsv834737 3 75640941 75844263 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442884,nssv1442883,nssv1442886 M 95 1 2 "" nsv509830 3 75650514 75656514 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622027,nssv623906 M 4 0 2 "" NA10860,NA18994 nsv527783 3 75650909 75731665 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704274 S 2026 0 1 "" nsv442863 3 75655239 75669495 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv1472e1 3 75678008 76006154 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv25118,essv13155,essv3989,essv24747,essv19247,essv23879,essv9818,essv17967 M 271 0 0 "" NA10838,NA10856,NA10860,NA12003,NA12814,NA18863,NA18970,NA19102 dgv1473e1 3 75678008 76160982 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv8279,essv15136,essv23314,essv9074,essv6007,essv21739,essv18374 M 271 0 0 "" NA12248,NA12249,NA12264,NA18571,NA19103,NA19129,NA19132 nsv442864 3 75695864 75703585 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" essv18298 3 75698633 75885406 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA10846 nsv10282 3 75711619 75715157 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11922 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18502 nsv10283 3 75740085 75901422 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28984,nssv28902,nssv29131,nssv29241,nssv11759,nssv11997,nssv28912,nssv11729,nssv12743,nssv28504,nssv29196,nssv29226,nssv28510 M 31 5 7 Samples from several populations that are part of the HapMap project. "" NA10839,NA10847,NA11830,NA12740,NA12872,NA18537,NA18972,NA18975,NA18980,NA19132,NA19173 dgv1474e1 3 75795694 76001559 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv5675,essv11090 M 271 0 0 "" NA18605,NA19211 nsv237226 3 75848966 75855089 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255804 M 24 "" esv33470 3 75853081 75875933 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97587,essv99295,essv99448 M 51 0 3 "" 21616,22275,22335 nsv236147 3 75856832 75856982 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv254725 M 24 "" nsv509831 3 75860602 75866602 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618575,nssv621554 M 4 0 2 "" CHM,NA15510 nsv471427 3 75868719 75916945 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548248,nssv548250,nssv548249 M 3 "" dgv119n6 3 75951680 75951756 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv236838,nsv236446 M 24 "" dgv120n6 3 75963551 75969765 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv236130,nsv237311 M 24 "" nsv237275 3 75989536 75989536 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255853 M 24 "" nsv236397 3 75992216 75992457 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv254975 M 24 "" nsv236559 3 76060618 76060702 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255137 M 24 "" nsv10285 3 76065787 76081723 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28574,nssv28787,nssv29003,nssv29014,nssv12803,nssv12158,nssv11521,nssv28855,nssv28240 M 31 0 9 Samples from several populations that are part of the HapMap project. "" NA10847,NA11830,NA12155,NA12802,NA18853,NA18972,NA19007,NA19144,NA19240 nsv237457 3 76128650 76128718 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv256035 M 24 "" nsv237970 3 76144650 76145668 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv256548 M 24 "" essv7286 3 76158979 76250987 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18592 nsv818152 3 76159833 76176911 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416923 S 112 0 1 "" NA19138 nsv517731 3 76166636 76176911 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv668594,nssv689921,nssv684761,nssv681128,nssv680887,nssv653034,nssv670420,nssv672322,nssv690686,nssv661418,nssv689363,nssv686843,nssv676060,nssv687178,nssv692129,nssv692555 M 2026 0 16 "" nsv518802 3 76166636 76184447 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696255 S 2026 0 1 "" essv21828 3 76248984 76935064 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA11839 nsv10286 3 76272721 76277015 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12013 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18504 nsv238091 3 76317058 76326195 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv256669 M 24 "" nsv507104 3 76552677 76558677 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617606 S 4 1 0 "" CHM nsv3884 3 76729567 76763354 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv310 S 9 1 0 "" NA19240 nsv10287 3 76749498 76751377 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28885 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19144 nsv3885 3 76845956 76866610 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7830 S 9 0 1 "" NA12156 nsv10288 3 76860987 76866040 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12188,nssv12690,nssv29161 M 31 3 0 Samples from several populations that are part of the HapMap project. "" NA10839,NA12155,NA19221 nsv834738 3 76937179 77101108 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442888,nssv1442887,nssv1442890,nssv1442889 M 95 1 3 "" nsv818153 3 76998543 77008730 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417840 S 112 1 0 "" NA18852 nsv509832 3 77172858 77178858 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618576,nssv623907,nssv622028,nssv621555 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv525804 3 77320339 77333982 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701988 S 2026 0 1 "" dgv1475e1 3 77481544 77639025 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv20307,essv14650,essv17833,esv144,essv17038,essv22740,essv20624 M 271 0 0 "" NA07019,NA07056,NA10831,NA12144,NA19093,NA19144 nsv834739 3 77563811 77760406 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442891 S 95 1 0 "" nsv3886 3 77634414 77667854 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7831 S 9 0 1 "" NA12156 nsv509833 3 77642325 77648325 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623908 S 4 0 1 "" NA18994 nsv834740 3 77658643 77850175 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442893,nssv1442892 M 95 1 1 "" nsv441829 3 77910146 77924562 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv236123 3 77913013 77920350 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv254701 M 24 "" nsv526497 3 77925886 77939980 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702806 S 2026 0 1 "" nsv834741 3 77933500 78072374 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442894 S 95 1 0 "" nsv3887 3 78036567 78048232 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7832 S 9 0 1 "" NA12156 nsv834742 3 78114893 78337541 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442895 S 95 1 0 "" nsv460726 3 78378354 78538457 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537250 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00703 dgv1476e1 3 78536627 78579808 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv994,essv9562 M 271 0 0 "" NA18861 nsv834743 3 78576953 78746290 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442897 S 95 0 1 "" nsv237835 3 78686354 78686354 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv256413 M 24 "" nsv236494 3 78862114 78862413 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255072 M 24 "" nsv834744 3 78994235 79159160 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442898 S 95 0 1 "" nsv520937 3 79108259 79122096 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv681087,nssv692810,nssv678078 M 2026 0 3 "" nsv834745 3 79138116 79310627 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442899 S 95 1 0 "" esv2422412 3 79366217 81386046 CNV Deletion Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161546 S 181 0 1 "" ND01493 nsv834747 3 79523901 79674613 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442900 S 95 1 0 "" nsv460731 3 79667848 81408551 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537252 S 1557 0 1 "" NINDS_242 nsv236995 3 79689592 79689592 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255573 M 24 "" nsv507105 3 79774911 79780911 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620765 S 4 1 0 "" NA15510 nsv509834 3 79851021 79857021 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623909 S 4 0 1 "" NA18994 nsv834748 3 79911358 80068378 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442902,nssv1442901 M 95 1 1 "" nsv526868 3 79924453 79930747 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703226 S 2026 1 0 "" nsv3889 3 80012408 80057397 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7833 S 9 0 1 "" NA12156 nsv509835 3 80142785 80148785 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623910 S 4 0 1 "" NA18994 nsv460732 3 80240874 80353976 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537253 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00913 nsv520475 3 80249001 80352067 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697442 S 2026 1 0 "" nsv518676 3 80485923 80492849 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694260 S 2026 0 1 "" nsv508934 3 80662311 80675468 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619333 S 4 1 0 "" NA10860 nsv3890 3 80667948 80679526 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3100 S 9 1 0 "" NA18555 nsv527598 3 80668145 81333353 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704060 S 2026 1 0 "" nsv3891 3 80967973 81000970 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2402 S 9 1 0 "" NA18555 nsv237072 3 81008002 81009294 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255650 M 24 "" nsv3892 3 81257918 81291917 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv311 S 9 1 0 "" NA19240 nsv834749 3 81738067 81901570 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442903,nssv1442904,nssv1442905 M 95 3 0 "" nsv441830 3 81992028 82006436 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv3893 3 82073048 82085620 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3101,nssv3178 M 9 2 0 "" NA12878,NA18555 nsv523771 3 82445886 82495384 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699593 S 2026 1 0 "" nsv834750 3 82727715 82885473 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442906 S 95 1 0 "" nsv460734 3 82790459 82849478 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537255 S 1557 0 1 "" 1782681317_A nsv3894 3 82818367 82852822 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3102 S 9 1 0 "" NA18555 nsv526869 3 82930680 82932786 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703227 S 2026 1 0 "" nsv437779 3 82950582 82960328 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467660 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA12801 nsv10289 3 82951325 82955909 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12134,nssv28817,nssv11819,nssv12027 M 31 0 4 Samples from several populations that are part of the HapMap project. "" NA18517,NA18853,NA19132,NA19173 nsv442865 3 82955469 82955733 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv507106 3 83160171 83166171 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622858,nssv617607,nssv620766,nssv621708 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv433216 3 83211104 83290208 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463097 S 9 0 1 "" NA15510 nsv3895 3 83222784 83267738 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7834 S 9 0 1 "" NA12156 nsv529000 3 83224292 83326936 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705706 S 2026 1 0 "" nsv460738 3 83252666 83388138 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537256 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00947 nsv237137 3 83386757 83386757 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255715 M 24 "" nsv460739 3 83630125 83709387 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537257 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00930 nsv525529 3 83662568 83708628 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701664 S 2026 0 1 "" nsv509836 3 83815599 83821599 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623911,nssv621557,nssv618577,nssv622029 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv521028 3 83843045 83857768 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv680092,nssv692130 M 2026 0 2 "" nsv523566 3 83851258 84088727 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699347 S 2026 0 1 "" nsv3896 3 83925899 83942799 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4664 S 9 0 1 "" NA19129 nsv834751 3 84070178 84216160 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442908 S 95 0 1 "" nsv528225 3 84100320 84107537 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704786 S 2026 0 1 "" nsv508225 3 84166778 84205712 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622464 S 4 0 1 "" NA18994 nsv834752 3 84354356 84520540 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442909 S 95 1 0 "" nsv3897 3 84420468 84424901 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9621 S 9 1 0 "" NA18507 nsv3898 3 84487786 84489778 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3179 S 9 1 0 "" NA12878 nsv3900 3 84499858 84531257 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3180 S 9 1 0 "" NA12878 nsv508935 3 84513043 84518297 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623377 S 4 1 0 "" NA18994 nsv460744 3 84609103 84712995 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537259 S 1557 0 1 "" 1780862432_A nsv509837 3 84631148 84637148 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621558,nssv622030,nssv618578,nssv623912 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv519161 3 84779229 84783402 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696642 S 2026 0 1 "" nsv442866 3 84782483 84784826 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv437865 3 84783402 84784165 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv471285,nssv471287,nssv471284,nssv471289,nssv471286,nssv471288 M 269 0 6 Samples from several populations that are part of the HapMap project. "" NA18576,NA18948,NA18961,NA18964,NA18987,NA19003 nsv518474 3 84803050 84810830 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695910 S 2026 0 1 "" nsv460746 3 84861769 84916203 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537260 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00576 nsv516390 3 84936469 84956683 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694655,nssv683693,nssv681410,nssv667965,nssv660106 M 2026 0 5 "" nsv471620 3 84963504 85114176 CNV Loss Sharp et al 2005 15918152 BAC_aCGH,FISH Eichler Segmental Duplication BAC array nssv550760,nssv550755,nssv550765,nssv550758,nssv550759,nssv550761,nssv550757,nssv550763,nssv550762,nssv550766,nssv550756,nssv550764,nssv550754 M 48 0 13 "" JK1051,JK1058,JK1061,JK1688,JK776,NA10469,NA10471,NA10473,NA10492,NA10494,NA10496,NA15726,P86GA nsv525508 3 84976358 84977702 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701640 S 2026 0 1 "" nsv508937 3 84996941 84996941 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618017 S 4 1 0 "" CHM nsv508938 3 85015693 85034738 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621210 S 4 1 0 "" NA15510 nsv3901 3 85025498 85037847 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3181,nssv11064,nssv312 M 9 3 0 "" NA12878,NA15510,NA19240 nsv238 3 85028769 85037847 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv238 S 1 1 0 "" NA15510 nsv237889 3 85040746 85040876 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv256467 M 24 "" dgv122n6 3 85040803 85040936 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv236765,nsv236264 M 24 "" nsv525335 3 85041767 85046672 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701450 S 2026 0 1 "" nsv460748 3 85276744 85385163 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537261 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00963 nsv522622 3 85435647 85449207 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv706018 S 2026 0 1 "" nsv526621 3 85553332 85750373 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702941 S 2026 0 1 "" nsv522784 3 85563414 85589921 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698428 S 2026 0 1 "" nsv527642 3 85634043 85702141 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704112 S 2026 0 1 "" dgv610n27 3 85736123 85777677 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv460752,nsv460750 M 1557 0 2 "" HGDP01213,HGDP01238 nsv522825 3 85777677 85780304 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698475 S 2026 0 1 "" nsv460753 3 85871697 85903106 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537265 S 1557 0 1 "" 1782681093_A dgv611n27 3 85999979 86088900 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv460755,nsv460754 M 1557 0 2 "" 1780854061_A,1782681169_A nsv834753 3 86469439 86629190 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442910 S 95 1 0 "" nsv526733 3 86567588 86583234 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703075 S 2026 1 0 "" nsv818154 3 86567588 86583234 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416225 S 112 1 0 "" NA12057 nsv524255 3 86793984 86797529 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700152 S 2026 0 1 "" nsv527690 3 86793984 86877191 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704166 S 2026 1 0 "" nsv818155 3 86815507 86835104 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417750 S 112 1 0 "" NA19003 nsv3902 3 86891064 86903822 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7835 S 9 0 1 "" NA12156 nsv518601 3 86913767 86914729 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696047 S 2026 0 1 "" nsv519148 3 86913767 87077814 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696625 S 2026 1 0 "" nsv527279 3 86928624 87945970 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703691 S 2026 1 0 "" nsv508939 3 86986983 87010627 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621211 S 4 1 0 "" NA15510 nsv834754 3 87137851 87299098 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442911 S 95 1 0 "" nsv3903 3 87176949 87221486 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2403 S 9 0 1 "" NA18555 nsv460756 3 87193364 87319231 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537268 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00721 nsv236736 3 87529307 87529472 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255314 M 24 "" nsv525008 3 87530524 87530639 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701045 S 2026 0 1 "" nsv834755 3 87707544 87872661 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442914,nssv1442912,nssv1442913 M 95 3 0 "" nsv509838 3 87760929 87766929 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623913,nssv621559 M 4 0 2 "" NA15510,NA18994 nsv3904 3 87814434 87848069 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3103 S 9 1 0 "" NA18555 nsv515607 3 87825437 87849425 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv678419,nssv664067,nssv677901,nssv655430,nssv686469 M 2026 0 5 "" nsv834756 3 87846483 88020869 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442915 S 95 0 1 "" nsv460757 3 87945970 88032423 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537269 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00041 nsv834758 3 87950053 88097665 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442916 S 95 1 0 "" nsv441831 3 87974966 87984943 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv527929 3 88032423 88086502 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704436 S 2026 0 1 "" nsv818157 3 88084403 88086502 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415626 S 112 0 1 "" NA12248 nsv525814 3 88168323 88174233 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701999 S 2026 0 1 "" nsv522343 3 88424056 88434658 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695123 S 2026 0 1 "" nsv3905 3 88439726 88472228 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7014 S 9 1 0 "" NA12156 nsv525281 3 88555212 88561356 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701384 S 2026 0 1 "" nsv237580 3 88567759 88567816 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv256158 M 24 "" nsv523304 3 88619534 88620181 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699044 S 2026 0 1 "" nsv3906 3 88691916 88737240 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7836 S 9 0 1 "" NA12156 nsv520602 3 88791024 88791604 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697513 S 2026 0 1 "" nsv834759 3 88983919 89188056 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442917 S 95 1 0 "" nsv3907 3 89099554 89118390 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3182 S 9 1 0 "" NA12878 nsv525314 3 89114130 89134165 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701422 S 2026 0 1 "" nsv509839 3 89133644 89139644 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621560 S 4 0 1 "" NA15510 nsv520982 3 89155216 89158745 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv679143,nssv685185 M 2026 0 2 "" nsv834760 3 89168219 89382088 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442919 S 95 0 1 "" nsv437866 3 89330571 89562955 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv471292,nssv471293,nssv471291,nssv471294 M 269 0 3 Samples from several populations that are part of the HapMap project. "" NA12752,NA12761,NA19007 dgv1477e1 3 89343185 89353777 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1330,essv20537 M 271 0 0 "" NA11995 nsv437790 3 89472197 89509279 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467671 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA12752 nsv10290 3 89473967 89502785 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv29033 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19007 esv33126 3 89476776 89500963 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv94667,essv93996 M 51 0 2 "" 21791,21802 nsv441832 3 89477282 89502071 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv612n27 3 89485137 89499754 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv460758,nsv460759 M 1557 0 2 "" 1780862461_A,HGDP00735 nsv516852 3 89485137 89525059 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv654138,nssv682683,nssv678885,nssv693266,nssv651692,nssv685381,nssv659668,nssv688310,nssv659807,nssv679236,nssv687977,nssv669437,nssv669175,nssv658789,nssv675848,nssv679667,nssv668253,nssv653467,nssv685100,nssv679008,nssv672450,nssv672246,nssv683511,nssv666499,nssv670375,nssv673951,nssv656032,nssv677220,nssv652023,nssv692556,nssv652824,nssv681701,nssv691680,nssv662661,nssv677774,nssv658417,nssv655719,nssv658096,nssv655817,nssv683055,nssv682207,nssv668515,nssv674592,nssv662413,nssv676268,nssv656076,nssv677599,nssv669121,nssv693549,nssv683716,nssv671529,nssv665782,nssv662433,nssv684106,nssv675216,nssv659104,nssv667032,nssv655335,nssv665522,nssv664954,nssv678127,nssv679155,nssv653123,nssv683485,nssv672951,nssv678402,nssv682138,nssv687779,nssv678700,nssv670142,nssv673146,nssv682049,nssv666196,nssv671614,nssv682964,nssv681064,nssv686664,nssv675338,nssv673755,nssv671132,nssv682811,nssv676131,nssv680979,nssv661961,nssv674346,nssv664688,nssv662718,nssv691541,nssv686470,nssv693385,nssv677902,nssv671671,nssv658802,nssv660253,nssv669537,nssv692947,nssv676160,nssv686815,nssv686363,nssv652404,nssv693213,nssv680842,nssv651890,nssv688401,nssv658681,nssv655243,nssv679176,nssv660152,nssv683523,nssv667605,nssv660655,nssv686426,nssv662125,nssv678352,nssv681169,nssv654707,nssv664395 M 2026 0 117 "" nsv3908 3 89572978 89618156 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3183,nssv9622 M 9 0 2 "" NA12878,NA18507 nsv508227 3 89591844 89605863 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620212 S 4 0 1 "" NA15510 nsv527704 3 89617067 89626367 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704183 S 2026 0 1 "" nsv441833 3 89619146 89629707 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv524781 3 89626367 89680369 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700772 S 2026 1 0 "" nsv3909 3 89727090 89778223 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv313,nssv7015 M 9 0 2 "" NA12156,NA19240 nsv508228 3 89750560 89769934 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618715 S 4 0 1 "" NA10860 nsv10291 3 89752004 89761167 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11551,nssv28833 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA10863,NA19240 dgv47n64 3 89752272 89758560 CNV Loss Wang_et_al_2007 17921354 SNP_array nsv818158,nsv818159 M 112 0 4 "" NA10860,NA10863,NA11992,NA12264 nsv437336 3 89752272 89767084 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467217 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19240 nsv460760 3 89753046 89758560 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537272 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00674 nsv516981 3 89753046 89758560 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv661986,nssv687700,nssv670273,nssv681488,nssv661176,nssv667662,nssv687075,nssv685586,nssv656937,nssv680676,nssv677029,nssv671239,nssv658097,nssv686053,nssv692247,nssv655866,nssv654526,nssv677701,nssv684321,nssv675837,nssv664412,nssv653548,nssv653454,nssv655336,nssv666400,nssv690726,nssv685252,nssv652873,nssv667690,nssv677410,nssv662565,nssv688504,nssv693294,nssv659038,nssv666371,nssv693550,nssv680939,nssv684460,nssv664318,nssv690659,nssv683195,nssv680599,nssv658154,nssv685009,nssv693039,nssv660841,nssv664829,nssv688964,nssv681723,nssv685442,nssv652967,nssv664185,nssv685402,nssv667548,nssv682850,nssv660476,nssv667578 M 2026 0 57 "" nsv442867 3 89754371 89756830 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv437867 3 89756519 89758560 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv471295,nssv471296 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA19238,NA19240 nsv818160 3 89756830 89758560 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416837,nssv1416838 M 112 0 2 "" NA19238,NA19240 nsv834761 3 89801198 89960025 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442920,nssv1442922,nssv1442921 M 95 2 1 "" nsv834762 3 90362058 90521983 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442928,nssv1442923,nssv1442927,nssv1442925,nssv1442926,nssv1442924,nssv1442930,nssv1442931,nssv1442933,nssv1442934,nssv1442935,nssv1442932 M 95 12 0 "" nsv834763 3 90369344 90571847 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442938,nssv1442937,nssv1442936,nssv1442939 M 95 0 4 "" nsv526870 3 90472437 90510976 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703228 S 2026 1 0 "" nsv834764 3 95000971 95159856 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442941 S 95 0 1 "" nsv507107 3 95525795 95531795 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620767,nssv621709,nssv622859,nssv617608 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv519137 3 95538510 95540029 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696615 S 2026 0 1 "" nsv834765 3 95599276 95804465 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442942 S 95 1 0 "" nsv509840 3 95705209 95711209 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618579,nssv623914 M 4 0 2 "" CHM,NA18994 nsv834766 3 95715217 95848474 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442943 S 95 1 0 "" nsv508940 3 95717128 95769401 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621212 S 4 1 0 "" NA15510 nsv460763 3 95867022 96078762 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537274 S 1557 1 0 "" 1780862081_A nsv460764 3 95962539 96136871 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537275 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00232 nsv508941 3 96106663 96135223 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621213,nssv619334 M 4 2 0 "" NA10860,NA15510 nsv460765 3 96320418 96387404 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537276 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00133 nsv507108 3 96329625 96335625 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622860,nssv621710,nssv620214 M 4 3 0 "" NA10860,NA15510,NA18994 nsv518266 3 96348647 96351010 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695696 S 2026 0 1 "" nsv834767 3 96454759 96630725 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442944 S 95 1 0 "" nsv834769 3 96523639 96684924 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442945 S 95 1 0 "" nsv521376 3 96598522 96599639 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697986 S 2026 0 1 "" nsv525564 3 96598522 96605570 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701703 S 2026 0 1 "" nsv237648 3 96603908 96609472 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv256226 M 24 "" dgv1478e1 3 96766457 96876444 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv21769,esv11 M 271 0 0 "" NA12239 nsv3911 3 96807290 96853074 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7016 S 9 0 1 "" NA12156 nsv834770 3 96928366 97089513 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442946 S 95 0 1 "" nsv834771 3 97104679 97228441 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442947 S 95 0 1 "" nsv520553 3 97107157 99212018 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697482 S 2026 1 0 "" nsv460766 3 97184873 97196039 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537277 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00930 nsv517518 3 97184873 97196039 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv686625,nssv704140,nssv690259,nssv654041,nssv688889,nssv664088,nssv667470,nssv675266,nssv661449,nssv681129,nssv669515,nssv666830,nssv693577,nssv691030 M 2026 0 14 "" nsv236829 3 97206526 97206770 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255407 M 24 "" nsv236221 3 97206771 97206771 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv254799 M 24 "" nsv460767 3 97331874 97363067 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537278 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01015 nsv527856 3 97434286 97493367 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704354 S 2026 1 0 "" nsv3912 3 97452484 97498058 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7017 S 9 0 1 "" NA12156 nsv522087 3 97668244 97780070 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694859 S 2026 1 0 "" nsv515682 3 97786578 97800454 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv673515,nssv662702,nssv671419,nssv664371,nssv686364,nssv660477,nssv693317,nssv677481 M 2026 0 8 "" dgv292n21 3 98239013 98336809 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv522959,nsv525805 M 2026 0 2 "" nsv3913 3 98422613 98455817 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5976 S 9 1 0 "" NA19129 nsv10292 3 98564670 98688552 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11581,nssv29191 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA10839,NA19240 nsv834772 3 98649728 98818768 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442948 S 95 1 0 "" esv33674 3 98698309 98704967 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100782 S 51 0 1 "" 21656 dgv1479e1 3 98699482 98904950 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv17505,essv904,essv6621,essv15051,essv18396,essv4848,esv29,essv20932,essv19948,essv9468,essv2886 M 271 0 0 "" NA12249,NA12762,NA12801,NA12813,NA18540,NA18621,NA18953,NA19000,NA19129,NA19208 esv33274 3 98873132 98873621 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99345 S 51 1 0 "" 22275 nsv509841 3 99195213 99201213 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618580 S 4 0 1 "" CHM nsv460768 3 99335849 99373057 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537279 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01297 nsv834773 3 99338052 99526578 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442949 S 95 1 0 "" nsv442868 3 99370181 99402053 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv520979 3 99416931 99419735 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv681411,nssv679130,nssv703517 M 2026 0 3 "" nsv522368 3 99476958 99477853 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695148 S 2026 0 1 "" dgv293n21 3 99583791 99800526 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv520503,nsv528056 M 2026 0 2 "" nsv834774 3 99591113 99756754 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442950 S 95 0 1 "" nsv834775 3 99652749 99850242 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442952,nssv1442953 M 95 2 0 "" nsv236502 3 99732736 99737314 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255080 M 24 "" nsv524042 3 99800526 99918878 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699906 S 2026 1 0 "" nsv437801 3 99877907 99899590 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467682 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA06991 nsv508942 3 99879704 99897458 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619336,nssv620768 M 4 2 0 "" NA10860,NA15510 esv33580 3 99893514 99897268 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97500,essv101162,essv94778,essv95266,essv95891,essv92924,essv92824,essv93689,essv100108,essv93300,essv99262 M 51 3 8 "" 21616,21618,21791,21872,21911,21939,21944,21972,22086,22170,22275 nsv437868 3 99893739 99894341 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv471307,nssv471326,nssv471336,nssv471320,nssv471337,nssv471321,nssv471305,nssv471329,nssv471316,nssv471325,nssv471334,nssv471328,nssv471322,nssv471330,nssv471333,nssv471300,nssv471332,nssv471318,nssv471310,nssv471306,nssv471309,nssv471315,nssv471340,nssv471338,nssv471314,nssv471311,nssv471323,nssv471308,nssv471331,nssv471299,nssv471341,nssv471297,nssv471298,nssv471303,nssv471327,nssv471319,nssv471302,nssv471339,nssv471304,nssv471342,nssv471317 M 269 0 41 Samples from several populations that are part of the HapMap project. "" NA07034,NA07048,NA10839,NA11831,NA11840,NA11995,NA12006,NA12155,NA12239,NA12761,NA12763,NA12802,NA12814,NA12875,NA12878,NA12891,NA12892,NA18561,NA18564,NA18579,NA18593,NA18609,NA18621,NA18635,NA18636,NA18942,NA18945,NA18948,NA18949,NA18951,NA18952,NA18968,NA18969,NA18971,NA18976,NA18987,NA18990,NA18999,NA19007,NA19160,NA19161 nsv524353 3 99918878 99922327 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700262 S 2026 0 1 "" nsv509842 3 100053745 100059745 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618581 S 4 0 1 "" CHM nsv507109 3 100226799 100232799 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621711,nssv620215,nssv622861,nssv617609 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv460769 3 100249016 100287098 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537280 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00148 nsv3914 3 100255282 100285826 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10353 S 9 1 0 "" NA18956 nsv3915 3 100375358 100422743 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3184,nssv7837 M 9 0 2 "" NA12156,NA12878 nsv818161 3 100378076 100378340 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417841 S 112 1 0 "" NA18852 nsv433343 3 100378076 100383829 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463224 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA18956 nsv508229 3 100379221 100401276 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617478,nssv622465,nssv619918 M 4 0 3 "" CHM,NA15510,NA18994 nsv238026 3 100381754 100385082 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv256604 M 24 "" nsv508230 3 100416677 100452226 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617479 S 4 0 1 "" CHM nsv10293 3 100419669 100433587 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11469,nssv28290,nssv12218,nssv28829,nssv29220 M 31 0 5 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA12155,NA12740,NA12802 nsv437869 3 100426700 100430538 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv471344,nssv471345,nssv471343 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA10855,NA11831 nsv442869 3 100427148 100432111 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv516029 3 100428761 100430538 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv682847,nssv668251,nssv689900,nssv652561,nssv656923,nssv659942,nssv676153,nssv670803,nssv673144,nssv681002,nssv664875,nssv652430,nssv681445,nssv657874,nssv670074,nssv675413,nssv691229,nssv685336,nssv685601,nssv657189,nssv669533,nssv688397,nssv653120,nssv664290,nssv677643,nssv672679,nssv674953,nssv683483,nssv659128,nssv665057,nssv690482,nssv690608,nssv683225,nssv682026,nssv677850,nssv679339,nssv662298,nssv671612,nssv655828,nssv673449,nssv687217,nssv680047,nssv677058,nssv652477,nssv693604,nssv658841,nssv683714,nssv689148,nssv673513,nssv668703,nssv687053,nssv683562,nssv656731,nssv685878,nssv652802,nssv659036,nssv693292,nssv656235,nssv654380,nssv656476,nssv657347,nssv653748,nssv691295,nssv682178,nssv660718,nssv667797,nssv659805,nssv675062,nssv674344,nssv686466,nssv683675,nssv664166,nssv659167,nssv672570,nssv668133,nssv667202,nssv668387,nssv663323,nssv660869,nssv651675,nssv678397,nssv668410,nssv670559,nssv666696,nssv681258,nssv670208,nssv682112,nssv693857,nssv675526,nssv672217,nssv661472,nssv679760,nssv679843,nssv674219,nssv689489,nssv694036,nssv656012,nssv674371,nssv657819,nssv672140,nssv658856,nssv693470,nssv660754,nssv654479,nssv681698,nssv652311,nssv684867,nssv687851,nssv688124,nssv682755,nssv651987,nssv680653,nssv686359,nssv676826,nssv654345,nssv662431,nssv686025,nssv676012,nssv655715,nssv691310,nssv689425,nssv682562,nssv676447,nssv678418,nssv686423,nssv667383,nssv685583,nssv691066,nssv688161,nssv692318,nssv683623,nssv665690,nssv691945,nssv657143,nssv652980,nssv676872,nssv656759,nssv692214,nssv654542,nssv663834,nssv677392,nssv678947,nssv673030,nssv664357,nssv668925,nssv676237,nssv679625,nssv658416,nssv662699,nssv675313,nssv652072,nssv654628,nssv666369,nssv677407,nssv656308,nssv674125,nssv683997,nssv691677,nssv679382,nssv671429,nssv659875,nssv689611,nssv667601,nssv690568,nssv666108,nssv686452,nssv670888,nssv692063,nssv689380,nssv678326,nssv684534,nssv652631,nssv666021,nssv675177,nssv662657,nssv686745,nssv672244,nssv677620,nssv689461,nssv658175,nssv692653,nssv651870,nssv683026,nssv659274,nssv658596,nssv661763,nssv692471,nssv688706,nssv657166,nssv671874,nssv661369,nssv663653,nssv699729,nssv667712,nssv662563,nssv669219,nssv677065,nssv686903,nssv680673,nssv668636,nssv675796,nssv676780,nssv690682,nssv697771,nssv686916,nssv661656,nssv676387,nssv673926,nssv680841,nssv671128,nssv654887,nssv679978,nssv671811,nssv686401,nssv673054,nssv675771,nssv665931,nssv674661 M 2026 0 218 "" nsv818162 3 100428761 100430538 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416044,nssv1415887,nssv1417976,nssv1417977,nssv1417009,nssv1415886,nssv1417008,nssv1417978,nssv1415888 M 112 0 9 "" NA07000,NA07029,NA07345,NA07348,NA07357,NA10861,NA11994,NA11995,NA12813 nsv523197 3 100454371 100455616 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698914 S 2026 0 1 "" nsv818163 3 100487743 100498306 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417375 S 112 1 0 "" NA18944 nsv523835 3 100534837 100535155 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699667 S 2026 0 1 "" nsv527069 3 100534837 100539684 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703448 S 2026 0 1 "" nsv3916 3 100668698 100714742 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7018 S 9 0 1 "" NA12156 nsv508943 3 100681119 100741124 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620769 S 4 1 0 "" NA15510 nsv239 3 100685329 100690865 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv239 S 1 1 0 "" NA15510 nsv3917 3 100685329 100690865 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv11065 S 9 1 0 "" NA15510 nsv442870 3 100690157 100691151 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv520742 3 100810835 100814663 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697585 S 2026 0 1 "" nsv508231 3 100924710 100981641 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619919 S 4 0 1 "" NA15510 nsv3918 3 101058558 101074770 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10354 S 9 1 0 "" NA18956 nsv3919 3 101215045 101249324 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3185 S 9 1 0 "" NA12878 nsv523836 3 101388940 101389441 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699668 S 2026 1 0 "" dgv182e55 3 101782000 101962074 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv2751965,esv2751966,esv2751967,esv2751968,esv2751969 M 771 5 0 "" BEC_374,BEC_396,BEC_400,BEC_536,BEC_537 nsv3920 3 101782766 101801608 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3186 S 9 1 0 "" NA12878 dgv613n27 3 101793502 101916282 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv460770,nsv460771 M 1557 2 0 "" 1780854255_A,1780854325_A nsv516418 3 101807132 101916282 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv687348,nssv684459,nssv652898,nssv664394,nssv669689,nssv671129,nssv662687,nssv678633,nssv661473,nssv658152,nssv673191,nssv659901,nssv656493,nssv691678,nssv660996,nssv662328,nssv671430,nssv659504,nssv678676,nssv660356,nssv692551 M 2026 21 0 "" esv2751970 3 101825000 101925168 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6985140,essv6985141,essv6987170,essv6988896 M 771 1 0 "" SPC_102 dgv183e55 3 101825183 101975752 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv2751971,esv2751972,esv2751973,esv2751974 M 771 4 0 "" BEC_691,SPC_124,SPC_174,SPC_195 dgv614n27 3 101833435 101916282 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv460772,nsv460778,nsv460783,nsv460789,nsv460775,nsv460785,nsv460780,nsv460781,nsv460786,nsv460779,nsv460777,nsv460774,nsv460776,nsv460782,nsv460788 M 1557 15 0 "" 1780862074_A,1780862196_A,1780862246_A,1780862559_A,HGDP00099,HGDP00631,HGDP00669,HGDP01062,HGDP01063,HGDP01066,HGDP01359,NINDS_253,NINDS_69,NINDS_70,NINDS_82 nsv460787 3 101833435 101949708 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537297 S 1557 1 0 "" 1780854568_A nsv3922 3 102052345 102070068 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7839 S 9 0 1 "" NA12156 dgv1480e1 3 102096077 102259187 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv54,essv23962 M 271 0 0 "" NA12814 nsv10294 3 102151685 102153692 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11952 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18502 nsv441834 3 102152207 102155916 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv525082 3 102182517 102185814 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701140 S 2026 0 1 "" nsv3923 3 102255075 102289300 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3104 S 9 1 0 "" NA18555 nsv236152 3 102351120 102351120 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv254730 M 24 "" nsv236423 3 102351165 102351165 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255001 M 24 "" nsv3924 3 102371351 102391753 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3105 S 9 1 0 "" NA18555 nsv507110 3 102400775 102406775 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620216,nssv617610,nssv622862,nssv621712 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv508232 3 102487541 102510899 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622466 S 4 0 1 "" NA18994 nsv507111 3 102627509 102633509 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620217,nssv621713,nssv622863 M 4 3 0 "" NA10860,NA15510,NA18994 nsv508944 3 102730060 102777059 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623379 S 4 1 0 "" NA18994 nsv3925 3 102759196 102764226 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3187 S 9 1 0 "" NA12878 dgv294n21 3 102789197 102796630 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv528547,nsv522745 M 2026 0 2 "" dgv615n27 3 103571697 103583471 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv460790,nsv460791 M 1557 0 2 "" HGDP00112,HGDP01227 nsv507112 3 103574532 103580532 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621714,nssv617611,nssv620218,nssv622864 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv3926 3 103695826 103740323 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7019 S 9 0 1 "" NA12156 nsv237724 3 103766465 103766802 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv256302 M 24 "" nsv834776 3 103834176 104014732 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442954 S 95 1 0 "" nsv524557 3 103846987 103876842 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700511 S 2026 1 0 "" nsv460792 3 103949741 104570344 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537302 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01095 nsv834777 3 103950128 104117140 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442955 S 95 0 1 "" nsv236493 3 103986221 103994695 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255071 M 24 "" nsv522049 3 104347366 104354141 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694820 S 2026 0 1 "" nsv3927 3 104349722 104382692 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5977 S 9 1 0 "" NA19129 dgv1481e1 3 104428032 104433385 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1133,essv1814 M 271 0 0 "" NA18971 nsv520084 3 104428906 104430796 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv660563,nssv674386 M 2026 0 2 "" nsv508233 3 104529040 104540500 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619920 S 4 0 1 "" NA15510 nsv527886 3 104531581 105472583 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704388 S 2026 0 1 "" nsv460793 3 104561945 104570344 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537303 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01183 nsv460794 3 104579967 104662378 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537304 S 1557 0 1 "" 1780854599_A nsv511096 3 104597444 104609689 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624288 S 4 0 0 "" NA18994 nsv507113 3 104601783 104607783 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620219 S 4 1 0 "" NA15510 nsv460799 3 104605275 104695398 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537306 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00963 dgv1482e1 3 104738943 104903852 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv87,essv12422 M 271 0 0 "" NA19238 nsv10296 3 104886557 104898190 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28614 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA10847 nsv460803 3 105007007 105071116 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537307 S 1557 0 1 "" NINDS_162 nsv3928 3 105024032 105069057 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7840 S 9 0 1 "" NA12156 nsv509843 3 105059210 105065210 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618582 S 4 0 1 "" CHM nsv460804 3 105123848 105205033 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537308 S 1557 0 1 "" 1780862001_A nsv519135 3 105133659 105137759 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696613 S 2026 0 1 "" nsv818164 3 105183599 105202476 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417842 S 112 1 0 "" NA18852 nsv10297 3 105204462 105532823 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11499 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA12740 nsv236241 3 105292880 105292944 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv254819 M 24 "" dgv1483e1 3 105522067 106297806 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2263,esv732,essv3639 M 271 0 0 "" NA18966 nsv10298 3 105576616 105578725 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12720 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19221 esv35023 3 105586566 106261000 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6989153,essv6987729,essv6980172,essv6980171,essv6987730 M 771 0 1 "" NA18966 nsv437870 3 105615012 105630578 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv471347 S 269 0 1 Samples from several populations that are part of the HapMap project. "" NA18966 nsv437872 3 105725082 105740040 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv471348 S 269 0 1 Samples from several populations that are part of the HapMap project. "" NA18966 nsv519427 3 105732393 105732507 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696848 S 2026 0 1 "" nsv10299 3 105759634 105763286 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28580,nssv12051,nssv28654,nssv28963,nssv12833,nssv11463,nssv28340,nssv11982,nssv12248,nssv29221,nssv28863 M 31 0 11 Samples from several populations that are part of the HapMap project. "" NA07048,NA10839,NA10847,NA10863,NA12155,NA12802,NA12872,NA18502,NA18552,NA18860,NA18972 nsv523808 3 105821284 105824665 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699638 S 2026 0 1 "" dgv616n27 3 105837510 105864778 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv460807,nsv460805 M 1557 0 2 "" NINDS_104,NINDS_67 nsv437873 3 105841684 105870421 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv471349 S 269 0 1 Samples from several populations that are part of the HapMap project. "" NA18966 nsv10300 3 105861916 105868604 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28972 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18980 nsv10301 3 105899710 105907699 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12012 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18502 nsv437874 3 105903275 105910971 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv471350 S 269 0 1 Samples from several populations that are part of the HapMap project. "" NA18966 nsv10302 3 105923277 105927180 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12057 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19132 nsv834778 3 105973217 106163849 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442956 S 95 1 0 "" nsv437875 3 105981960 106026615 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv471351 S 269 0 1 Samples from several populations that are part of the HapMap project. "" NA18966 nsv3929 3 106026107 106056484 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5978 S 9 1 0 "" NA19129 nsv507114 3 106095259 106101259 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620220 S 4 1 0 "" NA15510 nsv528094 3 106098595 106101306 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704632 S 2026 0 1 "" nsv437876 3 106100663 106114293 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv471352 S 269 0 1 Samples from several populations that are part of the HapMap project. "" NA18966 nsv10303 3 106126821 106129139 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11598,nssv29063,nssv11484,nssv29044 M 31 0 4 Samples from several populations that are part of the HapMap project. "" NA11830,NA18564,NA18975,NA19007 nsv236286 3 106128120 106128290 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv254864 M 24 "" nsv460808 3 106138272 106197728 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537312 S 1557 0 1 "" NINDS_172 nsv437877 3 106193515 106260648 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv471353 S 269 0 1 Samples from several populations that are part of the HapMap project. "" NA18966 nsv516883 3 106197588 106197728 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv657081,nssv654676 M 2026 0 2 "" nsv525334 3 106197588 106200701 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701449 S 2026 0 1 "" nsv523698 3 106238102 106246367 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699505 S 2026 0 1 "" nsv460809 3 106246367 106256994 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537313 S 1557 0 1 "" NINDS_125 nsv460810 3 106249346 106266710 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537314 S 1557 0 1 "" NINDS_170 nsv518078 3 106360408 106364626 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695491 S 2026 0 1 "" nsv519785 3 106405977 106415848 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697050 S 2026 0 1 "" nsv525071 3 106487543 106892011 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701125 S 2026 1 0 "" nsv829650 3 106553583 106737726 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442959,nssv1442958,nssv1442957 M 95 3 0 "" nsv829651 3 106686114 106884826 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442960 S 95 0 1 "" nsv509844 3 106691070 106697070 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623915 S 4 0 1 "" NA18994 nsv460811 3 106695683 106799459 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537315 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01064 nsv528578 3 106783598 106825705 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705197 S 2026 0 1 "" nsv511097 3 107024172 107048496 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621561,nssv622358 M 4 0 0 "" NA10860,NA15510 nsv508234 3 107032554 107048496 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622467 S 4 0 1 "" NA18994 nsv518246 3 107271156 107271987 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695677 S 2026 0 1 "" nsv3930 3 107375727 107407568 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10355 S 9 1 0 "" NA18956 nsv525134 3 107494241 107497571 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701202 S 2026 0 1 "" nsv829652 3 107503623 107680135 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442961 S 95 1 0 "" nsv3931 3 107535539 107569804 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv315 S 9 1 0 "" NA19240 esv2422330 3 107633368 107902917 CNV Deletion Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161510 S 181 0 1 "" ND01354 dgv1484e1 3 107633520 107818033 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv471,essv24264 M 271 0 0 "" NA10856 nsv10304 3 107702453 107706016 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11493,nssv11529,nssv12043 M 31 3 0 Samples from several populations that are part of the HapMap project. "" NA07048,NA12740,NA18504 nsv526864 3 107702820 107708913 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703222 S 2026 1 0 "" nsv528075 3 107805520 107807511 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704611 S 2026 0 1 "" nsv460812 3 107820260 108025656 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537316 S 1557 0 1 "" NINDS_45 dgv74n17 3 107862695 107873579 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437835,nsv437824,nsv437846,nsv437813 M 60 0 4 "" NA10846,NA10847,NA10855,NA12752 nsv237588 3 108072530 108072530 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv256166 M 24 "" nsv460813 3 108162609 108205492 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537317 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00610 nsv3933 3 108299655 108344587 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7841 S 9 0 1 "" NA12156 nsv507115 3 108443427 108449427 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622865 S 4 1 0 "" NA18994 nsv829653 3 108495168 108678246 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442964 S 95 1 0 "" nsv3934 3 108507811 108552033 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2404 S 9 0 1 "" NA18555 nsv508235 3 108509965 108564468 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618716 S 4 0 1 "" NA10860 nsv236844 3 108520645 108523022 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255422 M 24 "" nsv829654 3 108636786 108788921 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442966,nssv1442965 M 95 2 0 "" nsv3935 3 108645603 108655226 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7842 S 9 1 0 "" NA12156 nsv3936 3 108645956 108690898 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7843 S 9 0 1 "" NA12156 nsv237641 3 108648228 108648228 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv256219 M 24 "" nsv829655 3 108852876 109039033 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442971,nssv1442970,nssv1442972,nssv1442969,nssv1442968,nssv1442967 M 95 6 0 "" nsv236312 3 109037121 109042064 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv254890 M 24 "" nsv7355 3 109167149 109257926 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv11067,nssv11066 M 9 0 0 "" NA15510 nsv240 3 109180872 109206200 OTHER Inversion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv240 S 1 0 0 "" NA15510 nsv10305 3 109184817 109191092 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28915,nssv12042,nssv12164,nssv11849 M 31 0 4 Samples from several populations that are part of the HapMap project. "" NA18502,NA18517,NA19144,NA19173 nsv236303 3 109202900 109202900 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv254881 M 24 "" nsv241 3 109209279 109254220 OTHER Inversion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv241 S 1 0 0 "" NA15510 nsv829656 3 109383013 109585023 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442973 S 95 0 1 "" nsv829657 3 109435013 109636045 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442975 S 95 1 0 "" nsv526190 3 109537381 109608304 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702452 S 2026 1 0 "" nsv3937 3 109595462 109610786 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7844 S 9 0 1 "" NA12156 nsv829658 3 109685945 109867668 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442976 S 95 1 0 "" nsv524016 3 109768412 109791010 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699876 S 2026 0 1 "" nsv829659 3 109856425 110019667 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442977 S 95 1 0 "" nsv829661 3 109952695 110142223 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442978 S 95 1 0 "" nsv522119 3 109958498 110400929 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694891 S 2026 1 0 "" nsv829662 3 110023218 110206977 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442979 S 95 1 0 "" nsv521830 3 110037946 110039115 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694603 S 2026 0 1 "" nsv508236 3 110045989 110060279 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622468 S 4 0 1 "" NA18994 nsv519521 3 110066561 110068137 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv683624,nssv658256,nssv683954,nssv662819,nssv690819,nssv658883,nssv656655,nssv674257,nssv686205,nssv672930 M 2026 0 10 "" nsv520181 3 110114027 110115185 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv661444,nssv675471,nssv679245,nssv690016 M 2026 0 4 "" nsv829663 3 110118082 110272408 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442980 S 95 1 0 "" nsv829664 3 110166535 110352049 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442981 S 95 1 0 "" nsv3938 3 110188734 110233549 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7845 S 9 0 1 "" NA12156 nsv522072 3 110288055 110291677 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694844 S 2026 0 1 "" nsv518111 3 110293214 110293726 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695524 S 2026 0 1 "" nsv829665 3 110333102 110562637 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442982 S 95 1 0 "" nsv236880 3 110373391 110373459 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255458 M 24 "" nsv527912 3 110452511 110453409 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704418 S 2026 0 1 "" nsv3939 3 110573889 110601007 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3189 S 9 1 0 "" NA12878 nsv460814 3 110677736 110864118 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537318 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01179 nsv237670 3 110730862 110730862 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv256248 M 24 "" nsv507116 3 110862924 110868924 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621715 S 4 1 0 "" NA10860 nsv460815 3 110930153 110966992 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537319 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00881 nsv829666 3 111076435 111251342 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442983 S 95 1 0 "" nsv236806 3 111121244 111130331 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255384 M 24 "" nsv525501 3 111133475 111136765 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701633 S 2026 0 1 "" nsv520310 3 111160544 111172328 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv691387,nssv691388,nssv662769 M 2026 0 3 "" nsv829667 3 111269352 111422361 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442984 S 95 0 1 "" nsv3940 3 111308640 111353032 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4665 S 9 0 1 "" NA19129 nsv516356 3 111340487 111340801 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv692096,nssv667753 M 2026 0 2 "" nsv829668 3 111439093 111577905 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442986,nssv1442987 M 95 1 1 "" nsv517829 3 111443487 111443884 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695234 S 2026 0 1 "" nsv460818 3 111489895 111638514 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537320 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00529 dgv1485e1 3 111495856 111578020 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv4890,esv368 M 271 0 0 "" NA18561 nsv829669 3 111505414 111671087 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442988 S 95 1 0 "" nsv460819 3 111563583 111676716 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537321 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00864 nsv829670 3 111617340 111790946 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442989 S 95 1 0 "" nsv520365 3 111637862 111923855 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697374 S 2026 0 1 "" nsv829672 3 111689383 111844322 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442991,nssv1442992,nssv1442990 M 95 3 0 "" nsv526057 3 111753973 111766406 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702295 S 2026 0 1 "" nsv460820 3 111766406 111803725 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537322 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01103 nsv829673 3 111860759 112013505 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442993 S 95 0 1 "" nsv3941 3 111868480 111913213 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7846 S 9 0 1 "" NA12156 nsv507117 3 111958174 111964174 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620221 S 4 1 0 "" NA15510 nsv507118 3 112022586 112028586 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622866,nssv617612,nssv620222,nssv621716 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv829674 3 112098946 112253739 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442994 S 95 1 0 "" nsv460821 3 112120161 112983787 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537323 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00025 nsv3942 3 112180391 112214967 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv316 S 9 1 0 "" NA19240 nsv829675 3 112368295 112584548 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442995 S 95 1 0 "" nsv3944 3 112403906 112438454 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3190 S 9 1 0 "" NA12878 nsv3945 3 112404719 112449934 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7847 S 9 0 1 "" NA12156 nsv522010 3 112604650 112614202 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694779 S 2026 0 1 "" nsv3946 3 112718725 112765728 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7020,nssv317 M 9 0 2 "" NA12156,NA19240 nsv433354 3 112764554 112767251 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463235 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA18956 nsv3947 3 112942282 112975055 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7021 S 9 1 0 "" NA12156 nsv829676 3 112946777 113101890 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442997 S 95 1 0 "" nsv3948 3 113354596 113371682 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5979,nssv10356,nssv2407,nssv11068,nssv318 M 9 5 0 "" NA15510,NA18555,NA18956,NA19129,NA19240 nsv242 3 113356828 113368809 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv242 S 1 1 0 "" NA15510 nsv508945 3 113360146 113369971 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623380,nssv620771,nssv618018 M 4 3 0 "" CHM,NA15510,NA18994 nsv10307 3 113386664 113570376 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28859 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA07029 nsv3949 3 113481202 113526750 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7022 S 9 0 1 "" NA12156 nsv818165 3 113585830 113596024 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416142 S 112 0 1 "" NA12891 nsv516790 3 113585830 113597506 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv682374,nssv687501,nssv683542,nssv676013,nssv654448,nssv674639,nssv670889 M 2026 0 7 "" dgv1486e1 3 113587565 113596024 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv18779,esv1397 M 271 0 0 "" NA12891 nsv3950 3 113637816 113669886 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7023 S 9 1 0 "" NA12156 nsv236895 3 113950092 113950421 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255473 M 24 "" nsv509845 3 114102923 114108923 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622031 S 4 0 1 "" NA10860 nsv3951 3 114242244 114282926 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7848 S 9 0 1 "" NA12156 nsv522974 3 114314753 114319079 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698644 S 2026 0 1 "" nsv518148 3 114327865 114329476 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695569 S 2026 0 1 "" nsv515688 3 114329421 114329476 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv692097,nssv664409 M 2026 0 2 "" nsv829677 3 114339765 114521677 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1442998 S 95 1 0 "" nsv517636 3 114361226 114376330 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv689859,nssv652632,nssv699604 M 2026 3 0 "" nsv521829 3 114490215 114493640 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694101 S 2026 0 1 "" nsv237142 3 114600960 114601096 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255720 M 24 "" nsv237228 3 114691396 114693161 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255806 M 24 "" nsv509846 3 114697033 114703033 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618583 S 4 0 1 "" CHM nsv524086 3 114737862 114747684 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699956 S 2026 0 1 "" nsv519099 3 114919537 114933185 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696573 S 2026 0 1 "" nsv829678 3 114928867 115115743 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443013,nssv1443012,nssv1443008,nssv1443006,nssv1443010,nssv1443009,nssv1443011,nssv1443014,nssv1443005,nssv1443000,nssv1442999,nssv1443004,nssv1443003,nssv1443002,nssv1443001 M 95 0 15 "" nsv460822 3 115025771 115083660 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537324 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00622 nsv516703 3 115042710 115097933 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv684261,nssv671613,nssv673752,nssv670271 M 2026 0 4 "" dgv617n27 3 115068323 115102562 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv460824,nsv460825 M 1557 0 2 "" HGDP00899,NINDS_63 nsv236315 3 115336712 115337037 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv254893 M 24 "" nsv237833 3 115358389 115358439 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv256411 M 24 "" nsv519379 3 115437877 115438010 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694326 S 2026 0 1 "" nsv441835 3 115506749 115509270 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv829679 3 115532618 115735425 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443015 S 95 1 0 "" dgv77n68 3 115611212 115793167 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH nsv829681,nsv829680 M 95 3 0 "" nsv3952 3 115616635 115651228 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3191 S 9 1 0 "" NA12878 nsv237808 3 115949165 115949488 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv256386 M 24 "" nsv521467 3 116007335 116158336 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698078 S 2026 0 1 "" nsv3953 3 116134773 116162034 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9382 S 9 0 1 "" NA18517 nsv10308 3 116137943 116155489 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12750,nssv12194,nssv12073,nssv28975,nssv12087 M 31 0 5 Samples from several populations that are part of the HapMap project. "" NA18504,NA18517,NA19132,NA19144,NA19221 nsv437878 3 116141496 116150586 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv471360,nssv471367,nssv471370,nssv471364,nssv471361,nssv471366,nssv471365,nssv471356,nssv471354,nssv471363,nssv471362,nssv471369,nssv471355,nssv471359,nssv471358 M 269 0 15 Samples from several populations that are part of the HapMap project. "" NA18506,NA18507,NA18515,NA18516,NA18517,NA18871,NA18872,NA19130,NA19132,NA19160,NA19161,NA19192,NA19194,NA19203,NA19205 nsv442871 3 116143282 116151640 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv433365 3 116143746 116150586 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463246 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA18517 nsv437337 3 116143876 116154381 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467218 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18506 nsv829683 3 116174694 116351519 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443020 S 95 1 0 "" nsv821632 3 116448039 116489842 CNV Gain Sebat_et_al_2004 15273396 ROMA Custom Nimblegen photoprint 85000 probe ROMA oligo array nssv1421355 S 31 1 0 "" dgv123n6 3 116562312 116562378 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv237991,nsv237411 M 24 "" nsv829684 3 116602738 116763604 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443021 S 95 1 0 "" nsv3955 3 116716771 116727502 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5980 S 9 0 1 "" NA19129 nsv829685 3 117126211 117295603 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443022 S 95 1 0 "" esv2751975 3 117248975 117385591 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6984506,essv6984507 M 771 0 1 "" BEC_713 nsv3956 3 117314503 117317975 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2408 S 9 1 0 "" NA18555 nsv509847 3 117344115 117350115 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623917 S 4 0 1 "" NA18994 esv2751976 3 117350000 117386000 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6989441,essv6984579 M 771 0 1 "" BEC_720 nsv3957 3 117469640 117515315 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2409 S 9 0 1 "" NA18555 nsv437338 3 117558979 117593325 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467219 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18506 dgv1487e1 3 117568368 117604638 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv16180,esv1181 M 271 0 0 "" NA18506 essv10707 3 117581731 117587211 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18508 nsv516570 3 117581731 117590855 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv691024,nssv669248,nssv691916 M 2026 0 3 "" dgv1488e1 3 117624820 117790232 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv70,essv6324 M 271 0 0 "" NA18609 nsv3958 3 117682660 117707128 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9623 S 9 0 1 "" NA18507 nsv441836 3 117689415 117698429 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv509848 3 117699526 117705526 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622032 S 4 0 1 "" NA10860 nsv10309 3 117753094 117754965 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12224,nssv12072 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18502,NA18517 dgv124n6 3 117757962 117758298 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv236601,nsv236135 M 24 "" nsv829686 3 117808312 117977231 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443023 S 95 1 0 "" nsv460826 3 117809488 117837515 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537327 S 1557 0 1 "" 1780854279_A dgv295n21 3 117878268 118067971 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv524961,nsv521250 M 2026 0 2 "" nsv237351 3 117992146 117993167 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255929 M 24 "" nsv437339 3 118005909 118019154 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467220 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19194 nsv523314 3 118204632 118247977 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699056 S 2026 0 1 "" nsv237300 3 118225372 118225372 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255878 M 24 "" nsv516153 3 118654854 118655663 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv691988,nssv666518 M 2026 0 2 "" nsv829687 3 118668289 118843427 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443024 S 95 1 0 "" nsv522086 3 118779280 118988000 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694858 S 2026 0 1 "" nsv460827 3 118786061 118931004 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537328 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01361 nsv829688 3 119156464 119325048 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443025 S 95 1 0 "" nsv829689 3 119270697 119417033 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443026 S 95 1 0 "" nsv524029 3 119637216 119639785 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699892 S 2026 1 0 "" nsv460829 3 119678291 119712060 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537329 S 1557 0 1 "" 1780862433_A nsv829690 3 119688051 119860700 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443027 S 95 1 0 "" nsv829691 3 119876656 120043445 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443028 S 95 1 0 "" nsv3959 3 119967742 120012571 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7849 S 9 0 1 "" NA12156 nsv3960 3 120085007 120116062 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7024 S 9 1 0 "" NA12156 esv33349 3 120209267 120286290 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97222 S 51 1 0 "" 22075 nsv829692 3 120210462 120384401 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443030,nssv1443031 M 95 0 2 "" nsv523926 3 120211804 120284544 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699771 S 2026 1 0 "" dgv618n27 3 120211804 120292198 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv460830,nsv460831,nsv460832,nsv460833 M 1557 4 0 "" HGDP00058,HGDP00258,HGDP00675,NINDS_99 nsv3961 3 120220858 120266025 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7850 S 9 0 1 "" NA12156 nsv521267 3 120238009 120283561 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697877 S 2026 1 0 "" nsv507119 3 120379171 120385171 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621717,nssv620223,nssv617613,nssv622867 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv527259 3 120389132 120399317 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703665 S 2026 0 1 "" nsv829694 3 120494178 120636269 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443032 S 95 1 0 "" nsv3962 3 120577336 120618011 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7025 S 9 0 1 "" NA12156 nsv829695 3 120661580 120850686 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443034,nssv1443033 M 95 0 2 "" nsv523837 3 120761538 120771538 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699669 S 2026 1 0 "" nsv3963 3 120783754 120828594 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7851 S 9 0 1 "" NA12156 nsv522542 3 120789620 120791950 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705921 S 2026 0 1 "" nsv441837 3 120834088 120836628 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv515714 3 120836534 120836583 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv670560,nssv690569,nssv691265,nssv664508,nssv677596,nssv673680 M 2026 0 6 "" nsv527724 3 120836534 120844105 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704205 S 2026 0 1 "" nsv520805 3 120841735 120844105 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697622 S 2026 0 1 "" nsv460834 3 120866853 120941541 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537334 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00552 nsv237513 3 120979614 120981361 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv256091 M 24 "" nsv237066 3 120981213 120981361 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255644 M 24 "" nsv507120 3 121022127 121028127 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620224,nssv622868 M 4 2 0 "" NA15510,NA18994 nsv829696 3 121050349 121194095 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443036,nssv1443035 M 95 2 0 "" nsv3964 3 121269313 121314388 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7853 S 9 0 1 "" NA12156 nsv829697 3 121285546 121401125 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443037 S 95 0 1 "" nsv3967 3 121340398 121385805 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7026 S 9 0 1 "" NA12156 nsv518052 3 121375947 121379347 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695463 S 2026 0 1 "" dgv125n6 3 121376674 121377135 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv237995,nsv236593 M 24 "" nsv829698 3 121443559 121611816 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443038 S 95 1 0 "" nsv236293 3 121548940 121552551 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv254871 M 24 "" nsv3968 3 121549144 121594153 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7854 S 9 0 1 "" NA12156 nsv3969 3 121642432 121676065 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3106 S 9 1 0 "" NA18555 nsv3970 3 121717937 121762984 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7855 S 9 0 1 "" NA12156 nsv508238 3 121731264 121812114 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618717 S 4 0 1 "" NA10860 nsv829699 3 121791022 121967385 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443041,nssv1443039 M 95 0 2 "" nsv237498 3 121826250 121826250 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv256076 M 24 "" nsv829700 3 121951881 122158453 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443043,nssv1443042 M 95 1 1 "" nsv507121 3 121966738 121972738 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621718 S 4 1 0 "" NA10860 nsv3971 3 122036489 122071869 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3192 S 9 1 0 "" NA12878 nsv524529 3 122055985 122061407 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700479 S 2026 0 1 "" nsv829701 3 122418092 122598622 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443044 S 95 1 0 "" dgv296n21 3 122424268 122460073 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv518828,nsv517501 M 2026 0 5 "" nsv521397 3 122453590 122675040 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698008 S 2026 1 0 "" nsv829702 3 122528483 122710665 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443045 S 95 1 0 "" dgv1489e1 3 122747576 122806155 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1398,essv13328 M 271 0 0 "" NA18500 esv33473 3 122779227 122784104 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100048 S 51 0 1 "" 22086 nsv10310 3 122794406 122796654 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12863 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18972 nsv829703 3 122865980 123017183 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443046 S 95 0 1 "" nsv516233 3 122901991 123153095 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv662453,nssv705127,nssv683419,nssv657458,nssv659303,nssv666972,nssv702341,nssv657113 M 2026 1 7 "" esv33139 3 122983090 123574521 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv94257 S 51 0 1 "" 22394 nsv237246 3 123210903 123213214 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255824 M 24 "" nsv3972 3 123232182 123264346 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7027 S 9 1 0 "" NA12156 nsv528646 3 123249744 123264076 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705278 S 2026 0 1 "" nsv517368 3 123486447 123489217 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv693639,nssv667294,nssv670656,nssv669560,nssv669249,nssv666261,nssv672184,nssv681600,nssv673408,nssv673655,nssv652347,nssv653339,nssv691230,nssv678149,nssv683653,nssv674097,nssv682708,nssv680717,nssv656898,nssv688342,nssv651827,nssv674540 M 2026 0 22 "" nsv3973 3 123573746 123618427 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7856 S 9 0 1 "" NA12156 nsv3974 3 123626646 123659993 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv319 S 9 1 0 "" NA19240 nsv829705 3 123796734 123942668 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443047 S 95 0 1 "" nsv3975 3 123959669 123992052 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7857 S 9 0 1 "" NA12156 nsv829706 3 123998609 124153277 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443049,nssv1443048 M 95 2 0 "" nsv517377 3 124078467 124100135 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701957,nssv669776,nssv651847,nssv655038,nssv691424 M 2026 3 2 "" nsv517695 3 124144327 124145445 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv652871,nssv669561,nssv674541,nssv665564,nssv677739,nssv655066 M 2026 0 6 "" nsv460835 3 124151847 124172088 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537335 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01079 nsv460836 3 124169289 124205881 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537336 S 1557 0 1 "" NINDS_51 nsv521590 3 124362881 124371327 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694463 S 2026 0 1 "" nsv524614 3 124376942 124425472 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700575 S 2026 0 1 "" dgv297n21 3 124376943 124456196 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv525627,nsv526077 M 2026 0 2 "" nsv3976 3 124453232 124487816 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv320 S 9 1 0 "" NA19240 nsv829707 3 124559083 124741900 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443050 S 95 0 1 "" nsv3978 3 124657936 124702990 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7858 S 9 0 1 "" NA12156 nsv829708 3 124721126 124892494 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443052 S 95 1 0 "" nsv507122 3 124752980 124758980 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620225,nssv621719,nssv617614,nssv622869 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv829709 3 124755818 124949657 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443053 S 95 0 1 "" nsv460837 3 124810365 125341439 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537337 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00372 nsv829710 3 124842950 125027259 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443054 S 95 1 0 "" nsv518633 3 124924378 124935528 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696082 S 2026 1 0 "" nsv460838 3 124935528 124946398 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537338 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00088 nsv3979 3 125056104 125100222 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3193,nssv2410,nssv7859,nssv5981 M 9 4 0 "" NA12156,NA12878,NA18555,NA19129 nsv508946 3 125063361 125075342 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619337 S 4 1 0 "" NA10860 nsv520308 3 125108324 125141130 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv672666,nssv688798,nssv680069,nssv662750 M 2026 4 0 "" nsv829711 3 125324421 125496225 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443055 S 95 1 0 "" nsv3980 3 125541067 125585310 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2411 S 9 0 1 "" NA18555 nsv522662 3 125792028 125797250 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv706064 S 2026 0 1 "" nsv522068 3 125822839 125828673 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694839 S 2026 1 0 "" nsv3981 3 125959186 125990026 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5982 S 9 1 0 "" NA19129 nsv818166 3 126128924 126129527 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418542 S 112 0 1 "" NA12154 nsv460841 3 126208349 126267967 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537341 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01295 nsv829712 3 126240372 126385482 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443057,nssv1443056 M 95 0 2 "" nsv10311 3 126274942 126905304 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11523 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA07048 nsv3982 3 126279683 126308102 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5983 S 9 1 0 "" NA19129 nsv523278 3 126285578 126286481 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699012 S 2026 0 1 "" nsv236873 3 126418986 126419853 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255451 M 24 "" nsv508239 3 126538056 126542191 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618718 S 4 0 1 "" NA10860 nsv509849 3 126543497 126549497 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623918 S 4 0 1 "" NA18994 nsv829713 3 126559869 126736463 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443058 S 95 1 0 "" nsv829714 3 126649931 126819171 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443059 S 95 1 0 "" nsv507123 3 126759240 126765240 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621720,nssv620226 M 4 2 0 "" NA10860,NA15510 nsv441838 3 126926306 126941460 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv1490e1 3 126932312 126935644 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1285,essv25080 M 271 0 0 "" NA12892 nsv3983 3 126951360 126989382 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7028,nssv3107,nssv10358,nssv3194 M 9 4 0 "" NA12156,NA12878,NA18555,NA18956 nsv10312 3 126964448 126979449 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12893 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18972 nsv508948 3 126965731 127017950 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620772,nssv623381 M 4 2 0 "" NA15510,NA18994 nsv511098 3 126965731 127061054 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622360 S 4 0 0 "" NA10860 dgv1491e1 3 127024031 127185454 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv258,essv19525 M 271 0 0 "" NA12864 nsv10313 3 127120709 127127419 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28993 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18552 nsv829716 3 127129700 127318517 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443061,nssv1443060,nssv1443063 M 95 2 1 "" nsv3984 3 127148056 127194696 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv321 S 9 0 1 "" NA19240 nsv10314 3 127153587 127161317 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11514,nssv12923,nssv11879,nssv11611,nssv12081,nssv12254,nssv28847,nssv12278,nssv12132,nssv12810,nssv28620 M 31 0 11 Samples from several populations that are part of the HapMap project. "" NA12155,NA12872,NA18502,NA18517,NA18853,NA18860,NA18972,NA18975,NA19173,NA19221,NA19240 esv32658 3 127155924 127158383 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98851,essv96892,essv97812,essv97315,essv100106,essv93518,essv94905,essv96466,essv99145,essv97711 M 51 0 10 "" 21606,21817,21837,21879,22086,22128,22231,22261,22275,22278 nsv442872 3 127156081 127158661 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv10315 3 127193385 127207533 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12147 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19132 nsv442873 3 127194968 127204560 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv437879 3 127197330 127204202 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv471373,nssv471372,nssv471371 M 269 0 3 Samples from several populations that are part of the HapMap project. "" NA19130,NA19131,NA19132 nsv516949 3 127203712 127203913 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv662023,nssv686719,nssv665453,nssv676992,nssv686582,nssv682351,nssv661280,nssv662820,nssv653487,nssv690047 M 2026 0 10 "" nsv524971 3 127226369 127357086 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700996 S 2026 0 1 "" nsv236467 3 127260839 127260839 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255045 M 24 "" nsv237531 3 127260852 127260852 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv256109 M 24 "" nsv520037 3 127304970 127337107 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv689095,nssv660184,nssv696661 M 2026 1 2 "" nsv3985 3 127375421 127420087 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7861 S 9 0 1 "" NA12156 nsv507124 3 127431444 127437444 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621721,nssv622870,nssv617615,nssv620227 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv829717 3 127598731 127784742 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443064 S 95 0 1 "" nsv236874 3 127664616 127673261 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255452 M 24 "" nsv521785 3 127694644 127697828 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694097 S 2026 0 1 "" nsv525296 3 127816498 127822652 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701402 S 2026 0 1 "" nsv460842 3 127816498 127870573 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537342 S 1557 1 0 "" NINDS_4 nsv829718 3 127831452 128011351 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443065 S 95 1 0 "" dgv126n6 3 127841621 127841963 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv237189,nsv237278 M 24 "" esv33263 3 127909238 127909921 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99854 S 51 1 0 "" 22086 nsv829719 3 128108629 128260757 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443066 S 95 1 0 "" nsv3986 3 128115496 128150781 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv322 S 9 1 0 "" NA19240 nsv526947 3 128147221 128165864 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703317 S 2026 0 1 "" nsv237087 3 128151084 128151231 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255665 M 24 "" nsv460846 3 128160867 128214745 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537343 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00614 nsv3987 3 128202898 128235252 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5984 S 9 1 0 "" NA19129 nsv521490 3 128214857 128266687 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694453 S 2026 0 1 "" nsv527383 3 128281191 128283924 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703818 S 2026 0 1 "" nsv508949 3 128281915 128332022 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623382 S 4 1 0 "" NA18994 nsv3989 3 128282720 128317812 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv324 S 9 1 0 "" NA19240 nsv829720 3 128462153 128622322 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443067 S 95 1 0 "" nsv236680 3 128497988 128499001 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255258 M 24 "" nsv829721 3 128558647 128757676 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443069,nssv1443068 M 95 1 1 "" nsv516835 3 128641416 128644487 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv654325,nssv654524,nssv673055,nssv676014,nssv680412 M 2026 0 5 "" nsv508950 3 128642778 128715772 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618019 S 4 1 0 "" CHM esv33778 3 128675552 128676442 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99215 S 51 1 0 "" 22275 nsv509850 3 128712772 128718772 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623919,nssv622033 M 4 0 2 "" NA10860,NA18994 nsv509851 3 128717790 128723790 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618584 S 4 0 1 "" CHM esv33011 3 128721253 128721769 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98656 S 51 0 1 "" 21606 nsv460848 3 128869200 128903552 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537344 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00402 dgv1492e1 3 128898840 128916240 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1186,essv7957 M 271 0 0 "" NA19203 nsv3990 3 128933317 128966031 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2412 S 9 1 0 "" NA18555 nsv3991 3 129250293 129283212 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7029 S 9 1 0 "" NA12156 nsv508951 3 129314727 129346681 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619338,nssv618020 M 4 2 0 "" CHM,NA10860 nsv3992 3 129319596 129364827 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9874,nssv3195,nssv10359,nssv325,nssv7030 M 9 5 0 "" NA12156,NA12878,NA18507,NA18956,NA19240 esv32985 3 129325652 129394381 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100736 S 51 0 1 "" 21656 dgv1493e1 3 129540391 129803878 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv10956,essv12651,essv3986 M 271 0 0 "" NA18500,NA18970,NA19209 dgv1494e1 3 129540391 129920515 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv5339,essv20419,esv281,essv1171 M 271 0 0 "" NA10830,NA18563,NA18951 nsv508240 3 129549216 129684018 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619921 S 4 0 1 "" NA15510 nsv3993 3 129573475 129607112 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7862 S 9 1 0 "" NA12156 nsv524397 3 129578350 129642057 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700315 S 2026 0 1 "" nsv516926 3 129580194 129705475 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700340,nssv655009,nssv689678 M 2026 0 3 "" nsv10316 3 129611430 129621166 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv29023,nssv12953 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18552,NA18972 nsv508241 3 129685014 129764113 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619922 S 4 0 1 "" NA15510 nsv10318 3 129686035 129701815 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12840 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19221 essv17207 3 129716123 129920515 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19171 nsv10319 3 129809255 129821530 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12870 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19221 esv32649 3 129812802 129821511 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99891 S 51 1 0 "" 22086 nsv508952 3 129814202 129883328 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619339 S 4 1 0 "" NA10860 nsv3994 3 129841788 129885019 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4679,nssv7031 M 9 2 0 "" NA12156,NA19129 nsv433360 3 129847495 129895415 CNV Gain Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463241 S 9 1 0 Samples from several populations that are part of the HapMap project. "" NA12156 esv33932 3 129867195 129887927 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv94413,essv95510 M 51 2 0 "" 21808,21847 nsv442874 3 129878188 129895029 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv3995 3 129890191 129894021 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7032 S 9 1 0 "" NA12156 nsv437853 3 129910437 129939758 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467734 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA10859 nsv3996 3 130144075 130194172 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7863,nssv4666 M 9 0 2 "" NA12156,NA19129 nsv519919 3 130195076 130224340 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv675604,nssv659505 M 2026 0 2 "" nsv433217 3 130282205 130294146 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463098 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA12878 nsv525302 3 130398289 130404127 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701408 S 2026 0 1 "" nsv829722 3 130479055 130562505 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443070 S 95 1 0 "" nsv520607 3 130495442 130518667 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv673067,nssv686167,nssv694125 M 2026 1 2 "" nsv3997 3 130522082 130569804 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4680,nssv326,nssv10360 M 9 0 3 "" NA18956,NA19129,NA19240 nsv3998 3 130689597 130733906 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2413 S 9 0 1 "" NA18555 nsv522149 3 130745838 130816931 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694923 S 2026 0 1 "" nsv508953 3 130746891 130849417 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619340 S 4 1 0 "" NA10860 nsv520828 3 130772450 130846895 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697637 S 2026 0 1 "" nsv519392 3 130782989 130846895 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv682380,nssv681446,nssv655863 M 2026 3 0 "" nsv516538 3 130865594 130986725 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv686682,nssv668989,nssv674640,nssv692262,nssv663735 M 2026 5 0 "" nsv237038 3 131019943 131020092 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255616 M 24 "" nsv238037 3 131020099 131020223 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv256615 M 24 "" nsv4000 3 131113198 131125080 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9626 S 9 1 0 "" NA18507 dgv1495e1 3 131142165 131422680 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv733,essv19501,essv21533 M 271 0 0 "" NA12864,NA12873 nsv10320 3 131153050 131155633 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11559 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA12740 nsv10321 3 131157466 131163103 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11464,nssv12308 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA10839,NA12155 nsv460853 3 131163064 131192050 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537345 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01071 nsv508954 3 131187319 131285134 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623384 S 4 1 0 "" NA18994 nsv508242 3 131187319 131314946 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618719 S 4 0 1 "" NA10860 dgv1496e1 3 131192345 131291453 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv13981,essv101,essv6200 M 271 0 0 "" NA18563,NA19005,NA19098 essv5961 3 131192345 131311152 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18577 nsv10322 3 131202638 131207629 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12983,nssv29053,nssv12141,nssv12162,nssv12338 M 31 3 2 Samples from several populations that are part of the HapMap project. "" NA12155,NA18502,NA18552,NA18860,NA18972 dgv1497e1 3 131213417 131422071 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv8054,essv12892,essv1577,essv1303,essv19844,essv14951,essv20472,essv20985,essv21634,essv6422,essv6504,essv5778,essv744,essv7926,essv5681,essv8987,essv18522,essv6465,essv6786,essv25170,essv20690,essv17382,essv15447,essv21911,essv24091,essv14822,essv24448,essv23640,essv24021,essv23323,essv22252,essv18011,essv17355,essv944,essv13351,essv13289,essv21084,essv4349,essv12871,essv14914,essv15196,essv5836 M 271 0 0 "" NA07048,NA07055,NA07348,NA10838,NA10854,NA10863,NA11840,NA11992,NA12234,NA12249,NA12264,NA12763,NA12802,NA12865,NA12873,NA12878,NA18500,NA18502,NA18504,NA18517,NA18522,NA18524,NA18540,NA18545,NA18572,NA18594,NA18605,NA18622,NA18637,NA18855,NA18870,NA18949,NA18980,NA18997,NA19003,NA19103,NA19129,NA19132,NA19194,NA19202,NA19206,NA19209 dgv1498e1 3 131220081 131282340 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1317,essv1053,essv2143,essv4322,essv21479,essv1085,essv2772,essv4512,essv2907,essv12930,essv14244,essv10,essv7623,essv5700,essv20534,essv19714,essv3496,essv20457,essv8574,essv4536,essv7490,essv20848,essv2569,essv18544,essv11396,essv1695,essv17683,essv5608,essv25040,essv6112,essv12119,essv5886,essv7657,essv19152,essv6844,essv23744,essv2427,essv19802,essv8906,essv6556,essv7441,essv7460,essv597,essv3321,essv25059,essv5629,essv3439,essv2118,essv1640,essv7913,essv3261,essv3933 M 271 0 0 "" NA06994,NA10830,NA10835,NA11829,NA11993,NA11995,NA12236,NA12801,NA12812,NA12813,NA12864,NA12892,NA18547,NA18550,NA18558,NA18561,NA18564,NA18566,NA18573,NA18576,NA18579,NA18582,NA18593,NA18623,NA18624,NA18632,NA18633,NA18945,NA18947,NA18948,NA18951,NA18956,NA18959,NA18961,NA18967,NA18968,NA18970,NA18973,NA18974,NA18975,NA18978,NA18990,NA18999,NA19000,NA19007,NA19094,NA19100,NA19130,NA19171,NA19173,NA19192,NA19239 dgv1499e1 3 131220081 131291453 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv12071,essv20809,essv24211,essv12087,essv21568,essv21745,essv13949,essv13223,essv14842,essv7984,essv11322,essv5006,essv8676,essv4116,essv7504,essv20708,essv9307,essv8490,essv6075,essv16594,essv1983,essv20488,essv21656,essv7956,essv2726,essv22707 M 271 0 0 "" NA10855,NA10861,NA12004,NA12144,NA12146,NA12752,NA12761,NA12874,NA18529,NA18532,NA18571,NA18621,NA18852,NA18854,NA18860,NA18942,NA18965,NA19099,NA19101,NA19119,NA19120,NA19128,NA19160,NA19203,NA19238,NA19240 dgv1500e1 3 131220081 131339974 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv968,essv195,essv11360,essv13230,essv11595 M 271 0 0 "" NA18858,NA18981,NA18994,NA19131,NA19207 nsv4001 3 131224301 131312185 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7033,nssv2414,nssv3196 M 9 0 3 "" NA12156,NA12878,NA18555 dgv1501e1 3 131225809 131311152 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv21937,essv13263,essv13320,essv5882,essv7989,essv8250,essv8698,essv21502,essv7681,essv8083,essv12146,essv1817 M 271 0 0 "" NA12003,NA12057,NA18505,NA18507,NA18562,NA18620,NA18912,NA18971,NA19153,NA19161,NA19201,NA19221 nsv829723 3 131241184 131424453 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443072,nssv1443071 M 95 2 0 "" nsv442875 3 131246396 131288934 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv1502e1 3 131249025 131282340 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv12031,essv3683,essv10981,essv5429,essv22608,essv18796,essv23703,essv2718,essv630,essv3593 M 271 0 0 "" NA12154,NA12248,NA12740,NA18542,NA18943,NA18944,NA18969,NA18998,NA19092,NA19116 dgv1503e1 3 131249025 131291453 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv18878,essv6066,essv9563,essv22029,essv13507,essv991 M 271 0 0 "" NA07029,NA12815,NA18603,NA18861,NA18914,NA18964 dgv1504e1 3 131249025 131375667 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv18467,essv14676,essv14010 M 271 0 0 "" NA11832,NA19145,NA19222 dgv1505e1 3 131259253 131282340 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv8975,essv10603,essv3833,essv13360,essv502 M 271 0 0 "" NA18952,NA18953,NA19139,NA19159,NA19211 dgv1506e1 3 131259253 131291453 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv9279,essv7247,essv14213 M 271 0 0 "" NA18635,NA18913,NA19137 essv10508 3 131259253 131311152 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19143 nsv433361 3 131260499 131392506 CNV Gain Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463242 S 9 1 0 Samples from several populations that are part of the HapMap project. "" NA19240 nsv10323 3 131269235 131280325 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11544,nssv29054,nssv12133 M 31 2 1 Samples from several populations that are part of the HapMap project. "" NA18504,NA18563,NA18975 nsv437880 3 131271631 131275794 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv471380,nssv471381,nssv471374,nssv471376,nssv471375,nssv471378,nssv471377 M 269 0 7 Samples from several populations that are part of the HapMap project. "" NA18545,NA18572,NA18594,NA18621,NA18622,NA18635,NA18949 essv15175 3 131272596 131276436 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19210 nsv437340 3 131272596 131327159 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467221 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18506 dgv1507e1 3 131276436 131415944 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv21607,essv11062 M 271 0 0 "" NA12155,NA19138 dgv1508e1 3 131311152 131416346 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv8413,essv15962,essv9495,essv18901,essv983 M 271 0 0 "" NA12717,NA18964,NA19093,NA19142,NA19154 nsv10324 3 131312529 131314289 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12368 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA12155 nsv4002 3 131486873 131509967 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9627 S 9 1 0 "" NA18507 nsv437854 3 131608048 131616773 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467735 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA10863 nsv515803 3 131614555 131615207 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv692064,nssv669118,nssv671588,nssv681222,nssv664827,nssv662906,nssv667029,nssv684679,nssv680654 M 2026 0 9 "" nsv526814 3 131614555 131617261 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703168 S 2026 1 0 "" nsv437881 3 131615549 131616318 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv471383,nssv471382 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA10863,NA12234 nsv460854 3 131660438 131722422 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537346 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00088 nsv520849 3 131691956 131697259 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697648 S 2026 0 1 "" nsv4003 3 131746327 131779907 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv327,nssv7864 M 9 2 0 "" NA12156,NA19240 nsv521211 3 131800660 131803546 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv685250,nssv693471 M 2026 0 2 "" nsv508243 3 131811838 131850465 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617480 S 4 0 1 "" CHM nsv4004 3 131816832 131872771 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9628,nssv328,nssv4681 M 9 0 3 "" NA18507,NA19129,NA19240 nsv4005 3 131820498 131854406 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7866 S 9 1 0 "" NA12156 nsv460855 3 131829277 131950269 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537347 S 1557 0 1 "" 1780854255_A nsv509852 3 131895254 131901254 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618585 S 4 0 1 "" CHM nsv524200 3 132354747 132376542 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700085 S 2026 0 1 "" nsv4006 3 132521895 132553743 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4682 S 9 1 0 "" NA19129 nsv829724 3 132568467 132759083 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443078,nssv1443077,nssv1443076,nssv1443075 M 95 4 0 "" dgv1509e1 3 132802569 132855391 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1346,essv7667 M 271 0 0 "" NA18632 nsv829725 3 132888604 133050019 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443080,nssv1443081,nssv1443079 M 95 3 0 "" nsv516494 3 132943137 132979705 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv668680,nssv680070 M 2026 0 2 "" nsv4007 3 132984136 133015108 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7034 S 9 0 1 "" NA12156 nsv527967 3 133016503 133018572 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704479 S 2026 0 1 "" nsv4008 3 133060875 133094140 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7867 S 9 1 0 "" NA12156 nsv829727 3 133130352 133286143 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443083,nssv1443082 M 95 1 1 "" nsv508955 3 133168949 133168949 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623385 S 4 1 0 "" NA18994 nsv508244 3 133177475 133204350 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619923 S 4 0 1 "" NA15510 nsv4009 3 133190548 133232160 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2415 S 9 0 1 "" NA18555 nsv10325 3 133190820 133197328 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28389,nssv29083,nssv28879,nssv28893,nssv28889,nssv29074,nssv11553,nssv28628,nssv29084,nssv28660,nssv12398,nssv13013,nssv11589 M 31 0 13 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10863,NA11830,NA12155,NA12740,NA12802,NA12872,NA18552,NA18563,NA18572,NA18942,NA18972 nsv437883 3 133194409 133195715 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv471389,nssv471384,nssv471391,nssv471395,nssv471386,nssv471387,nssv471394,nssv471393,nssv471385,nssv471388,nssv471396,nssv471392 M 269 0 12 Samples from several populations that are part of the HapMap project. "" NA07000,NA07034,NA07048,NA07348,NA10830,NA12003,NA12154,NA12763,NA12865,NA12872,NA12874,NA12891 nsv433376 3 133194653 133195715 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463257 S 9 0 1 "" NA15510 nsv517016 3 133215118 133226185 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv693785,nssv693721,nssv680538,nssv687821,nssv653621,nssv693211,nssv686780 M 2026 0 7 "" nsv516375 3 133244808 133255970 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv676265,nssv667847,nssv681166 M 2026 0 3 "" nsv4011 3 133309853 133343686 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3108 S 9 1 0 "" NA18555 nsv4012 3 133440876 133486794 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4683,nssv329,nssv10361 M 9 0 3 "" NA18956,NA19129,NA19240 nsv508245 3 133453376 133530320 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617482 S 4 0 1 "" CHM nsv437884 3 133474137 133474682 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv471399,nssv471397,nssv471398 M 269 0 3 Samples from several populations that are part of the HapMap project. "" NA18550,NA18558,NA18633 nsv442876 3 133475471 133478382 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv829728 3 133561259 133765320 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443084 S 95 1 0 "" nsv522333 3 133632881 133643411 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695113 S 2026 0 1 "" nsv4013 3 133681173 133726266 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7868 S 9 0 1 "" NA12156 nsv4014 3 133870460 133905739 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3198 S 9 1 0 "" NA12878 nsv517045 3 133929034 133929802 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv676154,nssv653682 M 2026 0 2 "" nsv460856 3 134021150 134136043 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537348 S 1557 1 0 "" 1780854159_A nsv524179 3 134126107 134128954 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700061 S 2026 0 1 "" nsv4015 3 134193844 134210763 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv330 S 9 0 1 "" NA19240 esv32760 3 134282181 134282425 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98771 S 51 0 1 "" 21606 nsv4016 3 134498161 134515175 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4684 S 9 0 1 "" NA19129 dgv1510e1 3 134503648 134515590 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv11330,essv14905,esv1225 M 271 0 0 "" NA19128,NA19129 nsv460857 3 134584088 134604914 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537349 S 1557 0 1 "" NINDS_88 nsv509853 3 134607924 134613924 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618586 S 4 0 1 "" CHM nsv522281 3 134620132 134650061 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695064 S 2026 1 0 "" nsv237800 3 134660728 134668219 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv256378 M 24 "" nsv4017 3 134692002 134726056 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3199 S 9 1 0 "" NA12878 nsv516081 3 134882400 134894792 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv666081,nssv693380 M 2026 0 2 "" nsv528713 3 134920476 134933069 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705363 S 2026 0 1 "" nsv829729 3 134927569 135103085 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443086 S 95 0 1 "" nsv4018 3 134968565 135013366 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7869 S 9 0 1 "" NA12156 nsv527655 3 135170562 135178983 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704126 S 2026 0 1 "" nsv527126 3 135624791 135626617 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703511 S 2026 0 1 "" nsv460858 3 135674636 135678583 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537350 S 1557 0 1 "" NINDS_166 nsv829730 3 135681795 135842242 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443087 S 95 0 1 "" esv33705 3 135683732 135693445 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99989 S 51 0 1 "" 22086 nsv520371 3 135827392 135834422 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv680398,nssv663306 M 2026 0 2 "" nsv4019 3 135873922 135901367 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2416 S 9 1 0 "" NA18555 nsv528307 3 135913872 135916464 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704885 S 2026 0 1 "" nsv518817 3 135960806 135968778 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696270 S 2026 1 0 "" nsv508956 3 136010528 136024302 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623386 S 4 1 0 "" NA18994 nsv460859 3 136109037 136128408 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537351 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00894 nsv829731 3 136194411 136367762 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443088 S 95 0 1 "" nsv818168 3 136216214 136219369 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417301 S 112 0 1 "" NA18608 nsv520932 3 136292075 136304097 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697695 S 2026 0 1 "" nsv441840 3 136325323 136327541 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv519871 3 136325363 136325984 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv689042,nssv661416,nssv659203,nssv676993,nssv689766,nssv681126 M 2026 0 6 "" nsv4020 3 136332787 136365341 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7035 S 9 1 0 "" NA12156 nsv528223 3 136590376 136591870 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704784 S 2026 0 1 "" nsv460860 3 136590376 137251704 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537352 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00761 nsv527433 3 136704202 136707947 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703872 S 2026 0 1 "" nsv518089 3 136704202 136715692 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695502 S 2026 0 1 "" nsv524122 3 136828191 136940651 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700000 S 2026 0 1 "" nsv515820 3 136875238 136940651 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv664876,nssv668817,nssv656574,nssv678123,nssv658995,nssv655970,nssv686781,nssv691160,nssv680017,nssv679173,nssv674126,nssv658541,nssv656546,nssv684624,nssv661764,nssv677027,nssv654629,nssv693764,nssv679979 M 2026 0 19 "" nsv829732 3 137044404 137239538 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443089 S 95 1 0 "" nsv4022 3 137147474 137151517 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10363 S 9 1 0 "" NA18956 nsv4023 3 137254896 137299333 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4667 S 9 0 1 "" NA19129 nsv4024 3 137347605 137360384 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv331 S 9 1 0 "" NA19240 nsv508246 3 137404721 137521320 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618720,nssv622469 M 4 0 2 "" NA10860,NA18994 nsv237910 3 137466002 137469627 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv256488 M 24 "" nsv4025 3 137500156 137548320 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7037,nssv3200,nssv2417 M 9 0 3 "" NA12156,NA12878,NA18555 nsv520012 3 137570736 137796817 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv660078,nssv682203 M 2026 0 2 "" nsv238089 3 137580700 137588593 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv256667 M 24 "" nsv460861 3 137705652 137908298 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537353 S 1557 0 1 "" 1780862484_A nsv4026 3 137705682 137737494 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10364 S 9 1 0 "" NA18956 esv33758 3 137963443 137975092 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100743,essv100060 M 51 0 2 "" 21656,22086 esv33116 3 137980024 137980395 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99239 S 51 1 0 "" 22275 nsv4027 3 138008957 138032979 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9629 S 9 1 0 "" NA18507 nsv507125 3 138019940 138025940 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620228,nssv621722,nssv622871 M 4 3 0 "" NA10860,NA15510,NA18994 nsv524856 3 138176157 138673463 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700859 S 2026 0 1 "" nsv4028 3 138234746 138260051 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7038 S 9 0 1 "" NA12156 nsv829733 3 138303184 138428913 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443090 S 95 1 0 "" nsv4029 3 138390659 138428065 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7870 S 9 0 1 "" NA12156 nsv508247 3 138397946 138494357 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618721,nssv622470 M 4 0 2 "" NA10860,NA18994 nsv236231 3 138485954 138485954 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv254809 M 24 "" nsv437341 3 138498185 138522531 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467222 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19103 nsv10326 3 138510035 138586556 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12177 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19132 nsv441841 3 138510656 138525918 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv437885 3 138512881 138514451 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv471400,nssv471402 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA19102,NA19103 esv33216 3 138514046 138522577 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101641 S 51 0 1 "" 21909 nsv829734 3 138644339 138800383 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443091 S 95 0 1 "" nsv829735 3 138728560 138901614 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443092 S 95 0 1 "" nsv10327 3 139090977 139127634 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12900 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19221 dgv1511e1 3 139094487 139416533 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv7121,essv4766,essv18747,essv12776,essv4220,esv498,essv19388,essv20910,essv152,essv6319 M 271 0 0 "" NA11840,NA12801,NA12874,NA18537,NA18603,NA18609,NA18620,NA18968,NA19120 nsv460863 3 139166455 139223837 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537355 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01266 esv2751978 3 139198000 139373448 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6989241,essv6981468,essv6987963 M 771 0 1 "" BEC_236 nsv528340 3 139219167 139221628 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704922 S 2026 1 0 "" dgv1512e1 3 139230549 139416533 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv22152,essv18370,essv18603,essv22648,essv22424,essv5310 M 271 0 0 "" NA10857,NA10861,NA12234,NA12249,NA12752,NA18563 dgv298n21 3 139265353 139283911 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv522591,nsv519971 M 2026 2 0 "" nsv10329 3 139286041 139289814 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv29005,nssv28668,nssv28909,nssv12163,nssv11909,nssv11641,nssv12192,nssv28877,nssv11574 M 31 9 0 Samples from several populations that are part of the HapMap project. "" NA18502,NA18504,NA18572,NA18853,NA18942,NA18975,NA19144,NA19173,NA19240 nsv10330 3 139315497 139317296 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11619,nssv12284 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA12740,NA18517 nsv4030 3 139428406 139463446 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3201 S 9 1 0 "" NA12878 nsv528349 3 139508094 139615091 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704933 S 2026 0 1 "" nsv526089 3 139589396 139605479 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702335 S 2026 1 0 "" nsv522517 3 139657221 139780680 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705886 S 2026 0 1 "" nsv4031 3 140026905 140062209 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3202 S 9 1 0 "" NA12878 nsv829736 3 140220050 140417456 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443093 S 95 1 0 "" nsv236739 3 140223137 140223363 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255317 M 24 "" nsv508957 3 140506810 140534164 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618021 S 4 1 0 "" CHM nsv4033 3 140508728 140510573 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv332 S 9 1 0 "" NA19240 nsv4034 3 140517674 140562831 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7872 S 9 0 1 "" NA12156 nsv4035 3 140523220 140557070 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2418,nssv333 M 9 2 0 "" NA18555,NA19240 nsv460865 3 140893729 140938024 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537356 S 1557 0 1 "" 1780862202_A nsv519354 3 141101767 141104222 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv692405,nssv701440,nssv674986,nssv693858,nssv655610 M 2026 0 5 "" nsv520875 3 141131024 141132361 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694405 S 2026 0 1 "" nsv829738 3 141153534 141334643 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443094 S 95 1 0 "" nsv236799 3 141156676 141156676 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255377 M 24 "" nsv236382 3 141157153 141157153 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv254960 M 24 "" nsv520404 3 141182509 141182670 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv693605,nssv672446,nssv663782 M 2026 0 3 "" nsv4036 3 141214458 141221542 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7873 S 9 1 0 "" NA12156 nsv829739 3 141280194 141485383 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443095 S 95 1 0 "" nsv509854 3 141364627 141370627 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623920 S 4 0 1 "" NA18994 dgv1513e1 3 141408462 142007428 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv672,essv23766,essv18357 M 271 0 0 "" NA11994 nsv829740 3 141408465 141588867 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443098,nssv1443097 M 95 1 1 "" nsv527831 3 141415664 142016521 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704327 S 2026 1 0 "" nsv460867 3 141489992 141663261 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537357 S 1557 1 0 "" 1780862001_A esv34489 3 141491718 141952000 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6990255,essv6978574,essv6978573,essv6978572,essv6978571,essv6978570,essv6986643,essv6986644,essv6986645 M 771 1 0 "" NA11994 nsv818169 3 141497461 141664744 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415889 S 112 1 0 "" NA11994 nsv4037 3 141503206 141515364 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7874 S 9 0 1 "" NA12156 nsv829741 3 141503761 141665992 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443099 S 95 0 1 "" nsv236797 3 141691554 141691629 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255375 M 24 "" essv19147 3 141744385 141764782 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12812 nsv10331 3 141749720 141753728 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12171,nssv29002,nssv28962,nssv29093 M 31 0 4 Samples from several populations that are part of the HapMap project. "" NA18537,NA18860,NA18980,NA19007 nsv460869 3 141812806 141933353 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537358 S 1557 1 0 "" 1780862001_A nsv818170 3 141812806 141937534 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415890 S 112 1 0 "" NA11994 nsv829742 3 141816743 141839803 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443100 S 95 0 1 "" nsv829743 3 141866944 142042476 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443101 S 95 0 1 "" nsv4038 3 142019659 142062192 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2419 S 9 0 1 "" NA18555 nsv236365 3 142027107 142029745 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv254943 M 24 "" nsv521218 3 142125736 142147845 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv685337,nssv685561 M 2026 0 2 "" nsv4039 3 142431594 142465250 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv335 S 9 1 0 "" NA19240 nsv829744 3 142499447 142671866 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443102 S 95 0 1 "" nsv460871 3 142510312 142557660 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537359 S 1557 0 1 "" 1780862007_A nsv237170 3 142811952 142812014 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255748 M 24 "" nsv524429 3 142855089 142860028 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700356 S 2026 0 1 "" nsv237174 3 142867613 142867716 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255752 M 24 "" nsv517452 3 142885343 142886908 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv688772,nssv659721,nssv664952,nssv657502,nssv657775,nssv652051,nssv681783,nssv679438,nssv676937,nssv681127,nssv675093,nssv683625,nssv686932 M 2026 0 13 "" esv33727 3 143054889 143056458 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101536,essv101271,essv93846,essv96847,essv94797,essv94083,essv94346,essv97964,essv93104,essv95315,essv97430,essv95909,essv99076,essv92844,essv92691,essv98595,essv95973,essv93384,essv99704,essv95037,essv92620,essv97982,essv99302,essv97647,essv100129,essv100396,essv99486,essv96415,essv94193 M 51 29 0 "" 21603,21618,21634,21659,21791,21802,21808,21837,21863,21872,21879,21911,21938,21939,21944,22085,22127,22170,22217,22231,22233,22259,22275,22278,22286,22300,22335,22371,22394 esv33484 3 143108705 143108829 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99490 S 51 1 0 "" 22335 nsv507126 3 143157159 143163159 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620229 S 4 1 0 "" NA15510 dgv1514e1 3 143211568 143612534 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv20247,esv686,essv18263,essv24627 M 271 0 0 "" NA10846,NA12144 essv24219 3 143288086 143498288 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12144 dgv299n21 3 143295457 143647433 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv522549,nsv520523 M 2026 5 0 "" dgv619n27 3 143305319 143554630 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv460875,nsv460876 M 1557 2 0 "" 1780854038_A,1798860102_A esv2751979 3 143336624 143498288 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6983287,essv6983288,essv6988649 M 771 1 0 "" BEC_563 esv34483 3 143336624 143577329 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6978674,essv6986683,essv6978673 M 771 1 0 "" NA12144 nsv523945 3 143416347 143702240 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699792 S 2026 1 0 "" nsv523596 3 143615447 143647433 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699388 S 2026 0 1 "" nsv237317 3 143633721 143633721 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255895 M 24 "" nsv528954 3 143646715 143702240 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705650 S 2026 0 1 "" dgv300n21 3 143893898 143986303 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv518623,nsv521098 M 2026 2 0 "" nsv520533 3 143899768 143922997 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv672770,nssv672185 M 2026 2 0 "" dgv75n17 3 144087931 144105532 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437343,nsv437342 M 60 0 2 "" NA18914,NA19240 nsv437886 3 144093308 144094355 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv471403,nssv471406,nssv471404,nssv471405 M 269 0 4 Samples from several populations that are part of the HapMap project. "" NA18913,NA18914,NA19238,NA19240 nsv520851 3 144093308 144094355 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697649 S 2026 0 1 "" nsv10332 3 144093374 144096351 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11671 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19240 nsv4040 3 144131844 144158450 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7875 S 9 0 1 "" NA12156 dgv1515e1 3 144202928 144447071 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv679,essv23527 M 271 0 0 "" NA06993 nsv508250 3 144325152 144426420 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619924 S 4 0 1 "" NA15510 nsv529013 3 144359925 144370741 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705724 S 2026 1 0 "" esv34280 3 144370158 144444773 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6980263,essv6980264,essv6980265,essv6980262 M 771 1 0 "" NA06993 nsv818171 3 144377109 144442971 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416449 S 112 1 0 "" NA06993 essv18052 3 144388359 144447071 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA06993 nsv10333 3 144396479 144401803 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv29113 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18552 dgv1516e1 3 144475395 144768677 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv45,essv21217 M 271 0 0 "" NA11830 nsv520125 3 144503568 144511720 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697236 S 2026 0 1 "" esv32611 3 144673996 144678160 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99216 S 51 1 0 "" 22275 nsv523529 3 144698170 144712267 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699303 S 2026 0 1 "" nsv10334 3 144699852 144704267 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11701,nssv28907,nssv12207 M 31 0 3 Samples from several populations that are part of the HapMap project. "" NA18853,NA19132,NA19240 esv33993 3 144702362 144703954 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv94956 S 51 0 1 "" 22231 nsv518873 3 144703395 144720117 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696330 S 2026 0 1 "" esv2750736 3 144711737 144712477 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100711 S 51 0 1 "" 21656 nsv829745 3 144761210 144888324 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443103 S 95 1 0 "" nsv4041 3 144929764 144963938 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7876 S 9 1 0 "" NA12156 nsv518814 3 145149523 145186448 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696267 S 2026 1 0 "" nsv238021 3 145187983 145188305 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv256599 M 24 "" nsv522821 3 145381772 145384725 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698470 S 2026 0 1 "" nsv525190 3 145381772 145392045 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701269 S 2026 0 1 "" nsv4042 3 145496742 145531744 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3203 S 9 1 0 "" NA12878 dgv1517e1 3 145718900 145874085 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv483,essv5297 M 271 0 0 "" NA18624 dgv76n17 3 145760031 145785411 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437345,nsv437344 M 60 0 2 "" NA18872,NA19120 nsv10335 3 145763667 145774853 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28967 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18853 nsv441842 3 145765741 145770413 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv516101 3 145766340 145773952 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv654574,nssv666213,nssv686933 M 2026 0 3 "" nsv10336 3 145803138 145806513 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28997 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18853 nsv10337 3 145871243 145875341 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv29032 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18980 nsv829746 3 145934176 146100922 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443104 S 95 0 1 "" nsv829747 3 145946028 146136790 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443105 S 95 1 0 "" nsv525344 3 146067071 146145929 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701462 S 2026 1 0 "" nsv4044 3 146081923 146098155 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv336,nssv4686 M 9 2 0 "" NA19129,NA19240 nsv236967 3 146175810 146175935 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255545 M 24 "" nsv4045 3 146450063 146482519 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10365,nssv3204,nssv7039,nssv4687,nssv337,nssv2420 M 9 6 0 "" NA12156,NA12878,NA18555,NA18956,NA19129,NA19240 nsv460877 3 146451588 146657281 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537362 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00688 nsv508959 3 146468759 146468759 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623387 S 4 1 0 "" NA18994 nsv511099 3 146468759 146493944 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618642,nssv622362,nssv621563 M 4 0 0 "" CHM,NA10860,NA15510 nsv460878 3 146477425 146524537 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537363 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00553 nsv460879 3 146630118 146698061 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537364 S 1557 0 1 "" 1782681093_A nsv526968 3 146669771 146687870 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703340 S 2026 1 0 "" nsv520174 3 146707808 146736840 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv681141,nssv673241,nssv682932,nssv685144,nssv687481,nssv661350 M 2026 0 6 "" nsv460880 3 146804665 146873798 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537365 S 1557 1 0 "" 1780854491_A nsv523075 3 146870615 146964784 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698765 S 2026 0 1 "" nsv523565 3 146916637 146964784 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699346 S 2026 1 0 "" nsv508251 3 146921007 146974811 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618723 S 4 0 1 "" NA10860 esv2751980 3 146955718 147240892 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6983731,essv6983730,essv6989388,essv6989848,essv6983729 M 771 0 1 "" BEC_618 esv33307 3 146989081 147150531 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv95795 S 51 0 1 "" 21911 nsv525829 3 147097015 147346477 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702018 S 2026 0 1 "" dgv1518e1 3 147098550 147144469 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv8499,esv972 M 271 0 0 "" NA18854 nsv437347 3 147103508 147147916 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467228 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18854 nsv517206 3 147107324 147143060 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv652201,nssv654010,nssv674098,nssv667407,nssv660838,nssv665363,nssv689514,nssv674258 M 2026 0 8 "" nsv818172 3 147109066 147143060 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417844,nssv1417843 M 112 0 2 "" NA18852,NA18854 nsv508252 3 147126194 147138419 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618724 S 4 0 1 "" NA10860 nsv236136 3 147127667 147131884 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv254714 M 24 "" nsv4046 3 147175947 147362887 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9384 S 9 0 1 "" NA18517 nsv508253 3 147765318 147784175 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618725 S 4 0 1 "" NA10860 nsv516386 3 147849211 148241103 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701203,nssv703778,nssv691231,nssv667949 M 2026 3 1 "" nsv4047 3 147850852 147884556 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4688,nssv10366,nssv3205 M 9 0 3 "" NA12878,NA18956,NA19129 nsv508254 3 147862649 147869654 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618726 S 4 0 1 "" NA10860 nsv460881 3 147995451 148051735 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537366 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00963 nsv521514 3 148130002 148389896 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698131 S 2026 0 1 "" nsv4048 3 148542061 148576112 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3109 S 9 1 0 "" NA18555 nsv523198 3 148693675 148758128 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698916 S 2026 1 0 "" nsv460885 3 148693675 148768610 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537368 S 1557 0 1 "" 1780854061_A nsv829749 3 148893168 149101109 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443106 S 95 1 0 "" nsv4049 3 148896009 148910289 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7877 S 9 0 1 "" NA12156 nsv4050 3 149161908 149166802 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv338 S 9 1 0 "" NA19240 nsv4051 3 149185740 149218030 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3207 S 9 1 0 "" NA12878 esv33620 3 149351949 149365004 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98845 S 51 0 1 "" 21606 nsv829750 3 149581791 149745326 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443108 S 95 0 1 "" nsv527201 3 149596822 149677183 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703601 S 2026 0 1 "" dgv1519e1 3 149598961 149784837 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv10457,esv341 M 271 0 0 "" NA18515 nsv10338 3 149675023 149676802 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12193 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18504 nsv237123 3 149689175 149689492 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255701 M 24 "" nsv4052 3 149736385 149774492 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2421 S 9 0 1 "" NA18555 nsv508255 3 149751550 149783228 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622471 S 4 0 1 "" NA18994 nsv511100 3 149751550 149830103 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621564 S 4 0 0 "" NA15510 nsv507127 3 149809453 149815453 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621723,nssv622872 M 4 2 0 "" NA10860,NA18994 nsv4053 3 149864806 149895569 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7878 S 9 0 1 "" NA12156 nsv508256 3 149943572 150025218 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618727 S 4 0 1 "" NA10860 nsv829751 3 150038818 150201250 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443109 S 95 0 1 "" dgv127n6 3 150049491 150049818 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv236257,nsv236963 M 24 "" nsv829752 3 150124234 150284604 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443110 S 95 0 1 "" nsv829753 3 150155013 150321243 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443113,nssv1443112,nssv1443111 M 95 3 0 "" nsv528849 3 150254620 150318139 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705528 S 2026 1 0 "" nsv236913 3 150327071 150327398 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255491 M 24 "" nsv4055 3 150390418 150435230 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7879 S 9 0 1 "" NA12156 nsv528012 3 150421648 150450033 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704540 S 2026 0 1 "" dgv301n21 3 150433478 150456163 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv515663,nsv520288 M 2026 0 84 "" esv33315 3 150433789 150434023 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93297 S 51 1 0 "" 22170 nsv818173 3 150435723 150450033 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416226 S 112 0 1 "" NA12057 dgv48n64 3 150444739 150450033 CNV Loss Wang_et_al_2007 17921354 SNP_array nsv818175,nsv818174 M 112 0 8 "" NA06985,NA10863,NA11882,NA12234,NA18542,NA18576,NA18992,NA18999 nsv437855 3 150444739 150456163 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467736 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA10863 nsv10340 3 150444780 150452583 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv29114,nssv28953 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA10863,NA18563 esv33598 3 150445852 150452420 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97580,essv101118,essv100864,essv95246,essv98017 M 51 0 5 "" 21616,21618,21656,21872,22259 nsv442878 3 150446092 150450815 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv620n27 3 150446093 150450033 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv460887,nsv460891,nsv460889,nsv460888,nsv460890,nsv460892 M 1557 0 6 "" 1788485588_A,HGDP00267,HGDP00288,HGDP00304,HGDP00464,HGDP00545 nsv437887 3 150447390 150450033 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv471407,nssv471408 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA10863,NA12234 nsv460893 3 150449385 150450033 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537375 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00472 nsv516998 3 150499140 150500092 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv653576,nssv662024,nssv658502 M 2026 0 3 "" nsv4056 3 150641881 150686187 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2422 S 9 0 1 "" NA18555 nsv522752 3 150732982 150733287 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698388 S 2026 0 1 "" nsv518493 3 150738013 150740764 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695933 S 2026 0 1 "" nsv237898 3 150751170 150752844 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv256476 M 24 "" nsv525253 3 150827313 150845290 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701348 S 2026 0 1 "" nsv829754 3 150854722 150998752 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443114 S 95 1 0 "" nsv4057 3 150866684 150900994 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3110 S 9 1 0 "" NA18555 nsv507128 3 151329067 151335067 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621724 S 4 1 0 "" NA10860 nsv4058 3 151348944 151373046 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9630 S 9 1 0 "" NA18507 nsv236206 3 151360766 151361073 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv254784 M 24 "" nsv4059 3 151367840 151376987 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7880 S 9 0 1 "" NA12156 nsv818176 3 151379082 151383024 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417547 S 112 0 1 "" NA18971 nsv4060 3 151388090 151432564 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2423 S 9 0 1 "" NA18555 nsv829755 3 151474721 151638699 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443115 S 95 0 1 "" nsv523838 3 151538259 151538739 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699670 S 2026 0 1 "" nsv511101 3 151665352 151767066 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618604 S 4 0 0 "" CHM nsv507129 3 151725519 151731519 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622873,nssv620230,nssv621725 M 4 3 0 "" NA10860,NA15510,NA18994 nsv507130 3 151756039 151762039 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621726 S 4 1 0 "" NA10860 nsv4061 3 151921118 151953034 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4689 S 9 1 0 "" NA19129 nsv818177 3 152024061 152049120 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417845 S 112 0 1 "" NA18853 nsv4062 3 152100143 152117864 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7881 S 9 0 1 "" NA12156 nsv829756 3 152175334 152372436 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443116,nssv1443119,nssv1443117 M 95 1 2 "" dgv1520e1 3 152274323 152440183 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv23860,esv356 M 271 0 0 "" NA07022 nsv10341 3 152403742 152407494 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11494 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA10839 nsv829757 3 152527578 152709140 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443120 S 95 0 1 "" nsv4063 3 152609411 152644888 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv339,nssv10367,nssv4690,nssv7882 M 9 4 0 "" NA12156,NA18956,NA19129,NA19240 nsv508960 3 152625757 152644464 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620773,nssv618022,nssv623389,nssv619341 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv528372 3 152692888 152700975 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704959 S 2026 0 1 "" nsv237673 3 152758495 152758495 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv256251 M 24 "" nsv238007 3 152758513 152758513 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv256585 M 24 "" nsv4064 3 152780885 152853684 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7883,nssv7884 M 9 0 1 "" NA12156 esv32886 3 152851401 152851575 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv96813 S 51 1 0 "" 21659 nsv511102 3 152857248 152941090 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624289,nssv621566,nssv622363 M 4 0 0 "" NA10860,NA15510,NA18994 nsv4066 3 152857826 152888624 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv340,nssv2424,nssv11069,nssv3208,nssv10368,nssv7040,nssv4691 M 9 7 0 "" NA12156,NA12878,NA15510,NA18555,NA18956,NA19129,NA19240 nsv244 3 152863394 152888624 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv244 S 1 1 0 "" NA15510 esv33759 3 152881933 152891968 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv94050,essv99267 M 51 2 0 "" 21802,22275 nsv522472 3 152944083 153064893 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705836 S 2026 0 1 "" dgv1521e1 3 152957978 153145873 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv24674,esv554 M 271 0 0 "" NA11829 essv20845 3 152984775 153025999 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA11829 nsv517155 3 152992955 153028739 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv653372,nssv653926,nssv684424,nssv663926,nssv680976,nssv667901,nssv665549,nssv674220,nssv681567,nssv656462,nssv662629,nssv670149,nssv654575,nssv682151,nssv665336,nssv682732,nssv658456,nssv660490,nssv685121,nssv662124,nssv663219,nssv682205,nssv663106,nssv668991,nssv659090,nssv658351,nssv678031,nssv693150,nssv670027,nssv665692,nssv653888,nssv678327,nssv679762 M 2026 0 33 "" dgv621n27 3 152992955 153037447 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv460896,nsv460902,nsv460907,nsv460898,nsv460905,nsv460897,nsv460900,nsv460901,nsv460903,nsv460910,nsv460904 M 1557 0 11 "" 1780854058_A,1780854295_A,1780854354_A,1780854573_A,1798860292_A,1798860306_A,HGDP01373,NINDS_113,NINDS_240,NINDS_251,NINDS_268 dgv622n27 3 152997288 153077567 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv460908,nsv460909 M 1557 0 2 "" 1780862401_A,NINDS_204 nsv829758 3 153050231 153205957 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443121 S 95 1 0 "" nsv4067 3 153080411 153110616 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv341 S 9 1 0 "" NA19240 nsv4068 3 153164536 153181823 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3111 S 9 1 0 "" NA18555 nsv236777 3 153247629 153248068 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255355 M 24 "" nsv520986 3 153254007 153258677 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv693381,nssv679201 M 2026 0 2 "" nsv524190 3 153300915 153333181 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700073 S 2026 0 1 "" nsv4069 3 153341117 153373356 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2425 S 9 1 0 "" NA18555 dgv302n21 3 153739442 153744178 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv522172,nsv525095 M 2026 0 2 "" nsv4070 3 153786953 153831761 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7885 S 9 0 1 "" NA12156 nsv237382 3 153794422 153795853 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255960 M 24 "" nsv829761 3 153805539 153839338 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443122,nssv1443124,nssv1443123 M 95 1 2 "" dgv1522e1 3 153811704 154007851 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1415,essv18790 M 271 0 0 "" NA12891 nsv437856 3 153826073 153841282 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467737 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA10860 nsv441843 3 153829792 153838900 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv516334 3 153830180 153837943 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv692215,nssv690328,nssv672113,nssv698282,nssv667659,nssv677851,nssv675507,nssv675605,nssv672245,nssv675315 M 2026 0 10 "" nsv818179 3 153830180 153837943 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415829,nssv1417447,nssv1415830 M 112 0 3 "" NA10860,NA11992,NA18953 nsv437888 3 153833225 153837023 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv471410,nssv471409 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA10860,NA11992 nsv507131 3 153840472 153846472 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621727 S 4 1 0 "" NA10860 essv5630 3 153876460 154007851 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18579 nsv508961 3 153893811 153895735 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623390 S 4 1 0 "" NA18994 esv34910 3 153908000 153971000 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6979607,essv6979608,essv6990386 M 771 1 0 "" NA18579 nsv509855 3 154070308 154076308 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623921 S 4 0 1 "" NA18994 nsv522174 3 154094022 154094163 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694946 S 2026 0 1 "" nsv4071 3 154181897 154192056 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10369 S 9 1 0 "" NA18956 nsv460912 3 154220016 154320737 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537391 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00862 nsv519055 3 154502406 154526918 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696527 S 2026 0 1 "" nsv520682 3 154550501 154568524 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv689721,nssv674029,nssv687668,nssv690552 M 2026 0 4 "" nsv460913 3 154656817 154703913 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537392 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01156 nsv526058 3 154694539 154695030 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702296 S 2026 0 1 "" nsv522158 3 154853364 154857676 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694932 S 2026 0 1 "" nsv521905 3 154891493 154899182 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694677 S 2026 0 1 "" nsv517101 3 154948540 154954861 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv661446,nssv656149,nssv690017,nssv688207,nssv653789 M 2026 0 5 "" nsv521941 3 155009799 155033275 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694709 S 2026 0 1 "" nsv516822 3 155056526 155063949 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv671192,nssv663413,nssv656614 M 2026 0 3 "" nsv4072 3 155358200 155385447 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv343 S 9 1 0 "" NA19240 nsv508962 3 155364008 155387287 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623391,nssv620774,nssv618023,nssv619342 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv4073 3 155513988 155545543 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7041 S 9 1 0 "" NA12156 dgv1523e1 3 155740971 156041425 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv14469,essv14575,esv100 M 271 0 0 "" NA19201,NA19202 nsv523376 3 155800231 155918898 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699125 S 2026 0 1 "" nsv460914 3 155817664 155937231 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537393 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00941 nsv10342 3 156042074 156044203 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28969,nssv28700,nssv11524,nssv28694,nssv11731,nssv29144,nssv11604,nssv29123 M 31 0 8 Samples from several populations that are part of the HapMap project. "" NA10839,NA10847,NA12872,NA18563,NA18942,NA18975,NA19007,NA19240 nsv237727 3 156131076 156131396 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv256305 M 24 "" nsv829762 3 156362052 156535688 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443125 S 95 1 0 "" nsv508963 3 156501880 156567327 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623392 S 4 1 0 "" NA18994 nsv4074 3 156502186 156529499 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv344 S 9 1 0 "" NA19240 nsv236488 3 156523378 156532261 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255066 M 24 "" nsv4075 3 156546587 156593352 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7043,nssv2426 M 9 2 0 "" NA12156,NA18555 nsv437889 3 156662876 156667752 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv471419,nssv471421,nssv471413,nssv471422,nssv471415,nssv471414,nssv471416,nssv471411,nssv471420,nssv471417,nssv471425,nssv471418 M 269 0 12 Samples from several populations that are part of the HapMap project. "" NA18515,NA18516,NA18870,NA18872,NA19137,NA19139,NA19160,NA19161,NA19200,NA19202,NA19206,NA19208 nsv829763 3 156900254 156952781 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443126 S 95 1 0 "" dgv303n21 3 156948193 156949771 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv526490,nsv521244 M 2026 2 0 "" nsv441844 3 156963798 156974879 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" esv33346 3 156963922 156981143 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98342 S 51 1 0 "" 22352 nsv516712 3 156964311 156976617 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv676694,nssv656615,nssv671193,nssv670320,nssv680295,nssv689245 M 2026 6 0 "" nsv818180 3 156964311 156976617 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416045,nssv1416627,nssv1416638 M 112 3 0 "" NA10857,NA12043,NA12813 dgv1524e1 3 156968004 156973709 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv23104,esv1088,essv23747 M 271 0 0 "" NA12043,NA12813 nsv521239 3 157238029 157245427 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv688030,nssv689096,nssv687412 M 2026 0 3 "" nsv4078 3 157302924 157322363 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3112 S 9 1 0 "" NA18555 nsv4079 3 157518708 157552941 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3113 S 9 1 0 "" NA18555 nsv237787 3 157574877 157576393 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv256365 M 24 "" nsv829764 3 157657526 157830476 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443130,nssv1443127,nssv1443128 M 95 3 0 "" nsv829765 3 158050965 158201198 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443131 S 95 0 1 "" nsv829766 3 158294238 158503253 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443132,nssv1443133 M 95 2 0 "" nsv520331 3 158341002 158398352 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702488,nssv662968,nssv673876 M 2026 0 3 "" nsv4080 3 158447310 158457801 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7886 S 9 1 0 "" NA12156 dgv1525e1 3 158572868 158737386 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv16320,esv59 M 271 0 0 "" NA19193 nsv236425 3 158607178 158607178 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255003 M 24 "" esv32988 3 158683535 158692036 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv94028 S 51 0 1 "" 21802 nsv829767 3 158789113 158973146 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443134 S 95 0 1 "" nsv4081 3 158801168 158830357 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9875 S 9 0 1 "" NA18507 nsv441845 3 158822090 158824384 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv237294 3 159016989 159016989 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255872 M 24 "" nsv509856 3 159275293 159281293 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618587 S 4 0 1 "" CHM nsv829768 3 159315580 159494772 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443135 S 95 1 0 "" nsv520244 3 159655107 159655294 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv685298,nssv662083 M 2026 0 2 "" nsv437890 3 160257042 160274988 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv471426 S 269 0 1 Samples from several populations that are part of the HapMap project. "" NA07348 nsv4082 3 160637861 160670837 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3209 S 9 1 0 "" NA12878 nsv519199 3 160731525 160741826 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696684 S 2026 0 1 "" nsv522248 3 160777816 160780738 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695028 S 2026 0 1 "" nsv4083 3 160845234 160897615 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4692,nssv7044 M 9 2 0 "" NA12156,NA19129 nsv818181 3 160944158 160948908 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416144,nssv1416143 M 112 0 2 "" NA12878,NA12892 nsv4084 3 160975190 160995953 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7887 S 9 0 1 "" NA12156 nsv4085 3 161022596 161056668 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7888 S 9 1 0 "" NA12156 nsv829769 3 161089615 161287984 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443136 S 95 1 0 "" nsv4086 3 161095223 161140482 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7889 S 9 0 1 "" NA12156 nsv4087 3 161097026 161130265 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7890 S 9 1 0 "" NA12156 nsv521069 3 161263075 161265234 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697767 S 2026 0 1 "" nsv507132 3 161284436 161290436 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622874,nssv620231,nssv617616 M 4 3 0 "" CHM,NA15510,NA18994 nsv4089 3 161767550 161812726 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7891 S 9 0 1 "" NA12156 essv4314 3 161833723 161841511 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18564 dgv1526e1 3 161833723 161862863 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2913,esv978 M 271 0 0 "" NA19007 nsv10343 3 161838322 161849326 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv29153,nssv11628 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18564,NA19007 nsv441846 3 161839642 161841811 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" esv34627 3 161839642 161842000 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6988233,essv6979737 M 771 0 1 "" NA18620 esv32963 3 162037940 162085818 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv96995 S 51 1 0 "" 21817 nsv519474 3 162102907 162112969 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696872 S 2026 0 1 "" nsv507133 3 162145390 162151390 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617617 S 4 1 0 "" CHM nsv517658 3 162164316 162167422 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv689709,nssv664926,nssv668514,nssv693014,nssv669728,nssv652722 M 2026 0 6 "" nsv518915 3 162206066 162207635 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696375 S 2026 0 1 "" nsv4090 3 162337436 162369536 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7045,nssv345 M 9 2 0 "" NA12156,NA19240 nsv507134 3 162361798 162367798 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621728 S 4 1 0 "" NA10860 nsv829770 3 162472275 162551925 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443137 S 95 1 0 "" nsv4091 3 162501242 162546577 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7046 S 9 0 1 "" NA12156 nsv829772 3 162530519 162685256 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443139,nssv1443138 M 95 1 1 "" nsv518101 3 162584799 162585563 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695514 S 2026 0 1 "" nsv524747 3 162603185 162606228 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700738 S 2026 0 1 "" nsv829773 3 162633124 162797891 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443141 S 95 1 0 "" nsv520499 3 162676027 162678431 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697456 S 2026 0 1 "" nsv829774 3 162712107 162869621 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443142 S 95 1 0 "" esv2422309 3 162725091 162908634 CNV Deletion Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161276 S 181 0 1 "" ND03970 nsv515615 3 162887796 163046486 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv672159,nssv688972,nssv679782,nssv664110,nssv690533,nssv695607 M 2026 0 6 "" nsv460916 3 162903824 163035712 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537394 S 1557 0 1 "" NINDS_181 dgv1527e1 3 162932695 163076472 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv10761,esv302,essv21731 M 271 0 0 "" NA12248,NA18523 nsv460918 3 163236811 163274101 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537396 S 1557 0 1 "" 1780862432_A nsv460919 3 163281792 163577132 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537397 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01336 nsv236402 3 163300769 163300945 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv254980 M 24 "" nsv516904 3 163311860 163312194 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv654810,nssv692518,nssv688398 M 2026 0 3 "" nsv519130 3 163311860 163314925 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696609 S 2026 0 1 "" nsv516722 3 163337420 163462977 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv676504,nssv688308,nssv693533,nssv670439,nssv684262,nssv674835,nssv671571 M 2026 7 0 "" esv2751981 3 163346161 163499000 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6984796,essv6987684,essv6988849 M 771 1 0 "" SPC_18 nsv460922 3 163361415 163459433 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537398 S 1557 1 0 "" NINDS_67 nsv460923 3 163373380 163420667 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537399 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01284 nsv509857 3 163390624 163396624 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618588 S 4 0 1 "" CHM dgv623n27 3 163577132 163625177 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv460924,nsv460925 M 1557 0 2 "" 1782681080_A,NINDS_183 nsv516841 3 163605881 163685715 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv682152,nssv654962,nssv679980,nssv663324,nssv652021,nssv660276,nssv682627,nssv688973,nssv693261,nssv677508,nssv690939,nssv662299,nssv683401,nssv684210,nssv673382,nssv659304,nssv663107,nssv678515,nssv669625,nssv690836,nssv656166,nssv672598,nssv653466,nssv674387,nssv691162,nssv683861,nssv656950,nssv676155,nssv676342,nssv676037,nssv663247,nssv656760,nssv666323,nssv655633,nssv654500,nssv692358,nssv676591,nssv658053,nssv670737,nssv704826,nssv675094,nssv677792,nssv681003,nssv688887,nssv679063,nssv675943,nssv662603,nssv674345,nssv690971,nssv652367,nssv684070,nssv691232,nssv656448,nssv665290,nssv660542,nssv672287,nssv676663,nssv683451,nssv673592,nssv673450,nssv663044,nssv653749,nssv692263,nssv671627,nssv688722,nssv670690,nssv676896,nssv687245,nssv674609,nssv690498,nssv660676,nssv673031,nssv679502,nssv690135,nssv681039,nssv658935,nssv655186,nssv693472,nssv691699,nssv677597,nssv684680,nssv677852,nssv666214,nssv671077,nssv667323,nssv689830,nssv683510,nssv671497,nssv665768,nssv678634,nssv679844,nssv692899,nssv664358,nssv662385,nssv678398,nssv671749,nssv675434,nssv667881,nssv693315,nssv687158,nssv662538,nssv660456,nssv676716,nssv692519,nssv689710,nssv677196,nssv692452,nssv685603,nssv653957,nssv666462,nssv661153,nssv676266,nssv693015,nssv685617,nssv663027,nssv691311,nssv678712,nssv660614,nssv681468,nssv654077,nssv678328,nssv659481,nssv679409,nssv660094,nssv677059,nssv661782,nssv690763,nssv653285,nssv692153,nssv658659,nssv667870,nssv687777,nssv687330,nssv651747,nssv661543,nssv661566,nssv693232,nssv690853,nssv669903,nssv688344,nssv683212,nssv670010,nssv682660,nssv663761,nssv667203,nssv674569,nssv663800,nssv664529,nssv681580,nssv676505,nssv661588,nssv657903,nssv672771,nssv664577,nssv687381,nssv654704,nssv668356,nssv655773,nssv671008,nssv687349,nssv654811,nssv657954,nssv660151,nssv657459 M 2026 0 164 "" nsv437891 3 163612695 163624587 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv471427,nssv471428 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA10854,NA11840 dgv624n27 3 163613393 163625177 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv460930,nsv460927,nsv460933,nsv460934,nsv460929,nsv460926 M 1557 0 6 "" 1780854464_A,1780862355_A,1780862517_A,HGDP00328,HGDP00590,HGDP00645 nsv818182 3 163613393 163625177 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418053,nssv1418054 M 112 0 2 "" NA10859,NA11881 nsv460931 3 163613393 163710572 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537407 S 1557 0 1 "" NINDS_249 nsv460932 3 163613393 163720941 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537408 S 1557 1 0 "" NINDS_216 nsv441847 3 163620302 163625407 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv1528e1 3 163666164 163709523 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv5779,esv1422,essv3602 M 271 0 0 "" NA18540,NA18969 nsv10344 3 163692969 163718504 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28999,nssv29174 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18563,NA18942 nsv829775 3 163694320 163889104 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443143 S 95 1 0 "" dgv625n27 3 163696578 163712286 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv460938,nsv460946,nsv460941,nsv460942,nsv460940,nsv460947,nsv460955,nsv460945,nsv460936,nsv460954,nsv460935,nsv460944,nsv460948,nsv460952,nsv460943,nsv460953,nsv460937,nsv460956 M 1557 0 18 "" HGDP00748,HGDP00815,HGDP00945,HGDP00962,HGDP01100,HGDP01181,HGDP01185,HGDP01186,HGDP01187,HGDP01214,HGDP01215,HGDP01220,HGDP01231,HGDP01232,HGDP01237,HGDP01242,HGDP01347,HGDP01349 nsv460949 3 163696578 163720941 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537424 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00708 nsv442879 3 163699331 163709661 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv1529e1 3 163700474 163709523 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv3667,essv2142 M 271 0 0 "" NA18978,NA18991 nsv437892 3 163700696 163712286 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv471431,nssv471433,nssv471430,nssv471432,nssv471429 M 269 0 5 Samples from several populations that are part of the HapMap project. "" NA18540,NA18966,NA18968,NA18969,NA18991 nsv517264 3 163700696 163712286 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv670691,nssv691440,nssv692712,nssv681469,nssv692553,nssv665840,nssv663153,nssv654158,nssv694017,nssv673295,nssv683495,nssv672964,nssv690570 M 2026 0 13 "" nsv818183 3 163700696 163712286 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417257,nssv1417548,nssv1417604,nssv1417502,nssv1417171 M 112 0 5 "" NA18550,NA18593,NA18968,NA18971,NA18978 nsv4092 3 163738319 163767708 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10370 S 9 1 0 "" NA18956 nsv460957 3 163853643 163881971 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537432 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01199 nsv519736 3 163871907 163874503 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv658021,nssv691252 M 2026 0 2 "" nsv236897 3 163891013 163891328 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255475 M 24 "" nsv511103 3 163898368 163913054 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622364 S 4 0 0 "" NA10860 nsv829776 3 163905126 164060280 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443153,nssv1443152,nssv1443150,nssv1443144,nssv1443145,nssv1443149,nssv1443147,nssv1443148,nssv1443146 M 95 9 0 "" dgv1530e1 3 163953751 164225496 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv6838,esv279 M 271 0 0 "" NA18579 nsv4093 3 163962355 164137289 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9631,nssv2427,nssv9385,nssv11070,nssv3210 M 9 0 5 "" NA12878,NA15510,NA18507,NA18517,NA18555 nsv516901 3 163965434 163977804 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv685562,nssv654779 M 2026 0 2 "" nsv10345 3 163977866 163979812 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12201 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18860 nsv437894 3 163988137 164105358 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv471477,nssv471619,nssv471526,nssv471602,nssv467746,nssv467855,nssv471627,nssv471454,nssv471585,nssv467777,nssv471573,nssv471450,nssv467757,nssv467783,nssv471582,nssv471456,nssv471555,nssv471611,nssv471637,nssv467758,nssv471499,nssv467848,nssv471528,nssv471502,nssv471520,nssv467816,nssv471486,nssv471597,nssv471537,nssv471598,nssv467828,nssv471460,nssv471594,nssv471478,nssv471463,nssv471533,nssv471543,nssv471558,nssv471605,nssv467827,nssv471505,nssv471438,nssv467821,nssv467754,nssv467750,nssv471576,nssv471624,nssv471592,nssv471516,nssv471453,nssv467795,nssv471497,nssv471513,nssv467785,nssv471483,nssv467779,nssv467807,nssv471491,nssv471607,nssv471587,nssv471517,nssv467838,nssv471640,nssv471575,nssv467804,nssv471588,nssv471531,nssv467863,nssv471448,nssv467831,nssv467749,nssv471577,nssv467836,nssv471458,nssv471564,nssv467763,nssv471510,nssv471464,nssv471498,nssv471583,nssv471551,nssv471547,nssv467839,nssv467820,nssv471442,nssv467790,nssv467810,nssv471638,nssv467792,nssv471439,nssv471542,nssv471538,nssv471434,nssv471518,nssv471628,nssv471626,nssv467781,nssv471562,nssv471529,nssv467768,nssv471641,nssv467776,nssv471629,nssv471470,nssv467842,nssv471584,nssv471540,nssv467774,nssv471452,nssv471459,nssv467825,nssv471578,nssv471572,nssv471476,nssv471467,nssv467861,nssv467845,nssv471451,nssv467789,nssv467752,nssv471621,nssv467835,nssv471489,nssv471570,nssv467794,nssv471563,nssv471561,nssv471599,nssv467802,nssv467769,nssv467762,nssv471591,nssv471519,nssv471630,nssv471507,nssv471635,nssv467823,nssv471473,nssv467755,nssv471586,nssv467744,nssv467862,nssv467772,nssv467791,nssv467826,nssv471521,nssv471553,nssv471447,nssv471496,nssv471484,nssv471444,nssv467854,nssv467856,nssv467798,nssv467747,nssv467846,nssv471455,nssv471620,nssv467800,nssv471548,nssv471616,nssv471550,nssv471600,nssv467784,nssv471631,nssv467833,nssv471559,nssv471530,nssv471474,nssv467759,nssv467849,nssv467859,nssv467805,nssv467788,nssv467857,nssv471485,nssv467773,nssv471632,nssv471644,nssv471471,nssv467770,nssv467824,nssv467799,nssv467818,nssv471436,nssv471475,nssv471545,nssv467761,nssv467822,nssv471472,nssv471536,nssv471492,nssv467814,nssv471441,nssv471622,nssv471625,nssv471552,nssv467860,nssv467796,nssv467812,nssv471618,nssv471642,nssv471461,nssv471549,nssv471488,nssv471615,nssv467745,nssv471617,nssv471541,nssv467843,nssv471481,nssv471567,nssv471604,nssv471482,nssv471593,nssv467793,nssv471596,nssv471606,nssv471603,nssv471494,nssv467780,nssv471514,nssv467771,nssv471511,nssv471610,nssv471508,nssv471466,nssv467806,nssv467778,nssv471613,nssv471566,nssv467803,nssv471524,nssv467837,nssv467766,nssv471633,nssv471437,nssv471503,nssv467844,nssv471560,nssv471527,nssv471525,nssv471574,nssv471532,nssv467760,nssv467847,nssv467801,nssv471462,nssv471522,nssv471554,nssv471609,nssv471504,nssv471487,nssv471595,nssv467765,nssv467748,nssv467832,nssv471581,nssv471440,nssv467829,nssv467811,nssv471495,nssv471480,nssv471445,nssv467815,nssv471500,nssv471465,nssv467809,nssv471506,nssv467787,nssv471643,nssv467851,nssv471556,nssv471443,nssv467767,nssv467850,nssv467858,nssv467817,nssv471569,nssv467840,nssv467813,nssv471539,nssv471449,nssv471469,nssv471493,nssv467756,nssv471639,nssv467782,nssv467743,nssv471580,nssv471515,nssv471565,nssv471509,nssv467751,nssv467834,nssv471571,nssv471589,nssv471544,nssv471608,nssv471614,nssv471636 M 269 0 161 Samples from several populations that are part of the HapMap project. "" NA06985,NA06991,NA06994,NA07000,NA07019,NA07029,NA07034,NA07048,NA07056,NA07345,NA07348,NA07357,NA10831,NA10835,NA10838,NA10839,NA10847,NA10851,NA10860,NA10861,NA10863,NA11830,NA11831,NA11839,NA11882,NA11994,NA12003,NA12005,NA12006,NA12044,NA12056,NA12057,NA12145,NA12146,NA12248,NA12249,NA12264,NA12707,NA12716,NA12717,NA12740,NA12750,NA12751,NA12752,NA12760,NA12761,NA12763,NA12801,NA12812,NA12813,NA12865,NA12872,NA12874,NA12875,NA12878,NA12891,NA12892,NA18505,NA18524,NA18526,NA18532,NA18540,NA18542,NA18547,NA18550,NA18552,NA18555,NA18561,NA18563,NA18566,NA18570,NA18571,NA18572,NA18573,NA18576,NA18579,NA18582,NA18592,NA18593,NA18594,NA18603,NA18605,NA18609,NA18611,NA18612,NA18620,NA18621,NA18622,NA18623,NA18624,NA18632,NA18633,NA18635,NA18636,NA18637,NA18855,NA18857,NA18860,NA18861,NA18863,NA18940,NA18942,NA18943,NA18944,NA18945,NA18947,NA18948,NA18949,NA18951,NA18953,NA18956,NA18959,NA18960,NA18965,NA18966,NA18967,NA18968,NA18971,NA18972,NA18974,NA18975,NA18976,NA18978,NA18980,NA18981,NA18987,NA18990,NA18991,NA18992,NA18995,NA18997,NA18998,NA18999,NA19003,NA19005,NA19007,NA19098,NA19100,NA19101,NA19103,NA19116,NA19138,NA19139,NA19140,NA19142,NA19144,NA19145,NA19152,NA19154,NA19161,NA19200,NA19204,NA19207,NA19208,NA19209,NA19211,NA19221,NA19222,NA19223,NA19238,NA19240 nsv508257 3 163988173 164118941 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618729,nssv619925 M 4 0 2 "" NA10860,NA15510 nsv510886 3 163990226 164118941 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618633 S 4 0 0 "" CHM nsv236452 3 163991171 163993211 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255030 M 24 "" nsv245 3 163991649 164115393 CNV Loss Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv245 S 1 0 1 "" NA15510 dgv77n17 3 163992788 164109287 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437857,nsv437858 M 60 0 2 "" NA06991,NA07048 nsv10346 3 163993067 164109980 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11761,nssv28949,nssv12253,nssv12223,nssv12930,nssv28992,nssv12222,nssv11658,nssv12267,nssv11688,nssv28734,nssv11634,nssv12488,nssv29089,nssv28979,nssv28778,nssv29164,nssv11583,nssv11664,nssv29057,nssv12252,nssv12237,nssv11969,nssv29059,nssv12314,nssv29029,nssv29134,nssv29027,nssv29062,nssv29183,nssv11939,nssv28429,nssv28740,nssv11614,nssv29035,nssv29092,nssv11584,nssv12458,nssv11554,nssv28983,nssv29104,nssv13043,nssv29143 M 31 23 3 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10847,NA10863,NA11830,NA12155,NA12802,NA12872,NA18502,NA18504,NA18517,NA18537,NA18552,NA18564,NA18853,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19144,NA19173,NA19221,NA19240 nsv442880 3 163995359 164106583 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" esv33404 3 163995794 164108988 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101486,essv98765,essv97602,essv101244,essv93835,essv100814,essv96858,essv95111,essv98170,essv94730,essv94007,essv94372,essv97072,essv97879,essv95626,essv95484,essv93118,essv95355,essv97389,essv101674,essv95869,essv94493,essv99081,essv92954,essv92714,essv93726,essv96685,essv97099,essv98590,essv100075,essv95933,essv93437,essv93218,essv95036,essv92657,essv97972,essv96569,essv99173,essv97704,essv100327,essv99400,essv98469,essv96314,essv94187 M 51 43 1 "" 21603,21606,21616,21618,21634,21656,21659,21721,21772,21791,21802,21808,21817,21837,21841,21847,21863,21872,21879,21909,21911,21932,21938,21939,21944,21972,22011,22075,22085,22086,22127,22128,22170,22231,22233,22259,22261,22275,22278,22300,22335,22352,22371,22394 nsv829777 3 163998589 164160406 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443190,nssv1443199,nssv1443189,nssv1443198,nssv1443200,nssv1443186,nssv1443169,nssv1443192,nssv1443154,nssv1443193,nssv1443155,nssv1443191,nssv1443197,nssv1443163,nssv1443194,nssv1443158,nssv1443161,nssv1443160,nssv1443195,nssv1443167,nssv1443159,nssv1443182,nssv1443168,nssv1443165,nssv1443166,nssv1443164,nssv1443179,nssv1443174,nssv1443183,nssv1443181,nssv1443170,nssv1443171,nssv1443156,nssv1443201,nssv1443172,nssv1443188,nssv1443202,nssv1443187,nssv1443176,nssv1443178,nssv1443177,nssv1443175,nssv1443204,nssv1443180,nssv1443203,nssv1443205,nssv1443157 M 95 47 0 "" dgv25n14 3 164004041 164101587 CNV Loss Cooper et al 2008 18776910 SNP_array nsv433388,nsv433410,nsv433399 M 9 0 3 "" NA15510,NA18555,NA18956 nsv829778 3 164048363 164215057 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443210,nssv1443209,nssv1443208,nssv1443206 M 95 4 0 "" dgv1531e1 3 164054860 164221008 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv20102,essv21231,essv23441,essv17799,essv20765,essv24277,essv22157,essv19641,essv24084,essv9163,essv24745,essv21676,essv24711,essv21269,essv9626,essv24411,essv15099,essv17615,essv14360,essv21851,essv9363,essv20221,essv13850,essv23799,essv9046,essv18124,essv15674,essv21974,essv18268,essv21545,essv17167,essv22832,essv17516,essv21453,essv11508,essv22212 M 271 0 0 "" NA07048,NA10831,NA10846,NA10854,NA10855,NA10856,NA10857,NA10859,NA10860,NA11829,NA11830,NA11839,NA11993,NA11995,NA12004,NA12044,NA12144,NA12146,NA12155,NA12248,NA12707,NA12717,NA12753,NA12762,NA12763,NA12873,NA18853,NA18854,NA18912,NA19128,NA19129,NA19132,NA19141,NA19171,NA19173,NA19194 esv33682 3 164112237 164118773 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93188 S 51 1 0 "" 22170 esv33448 3 164134834 164180114 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93262 S 51 1 0 "" 22170 esv2751982 3 164166315 165274586 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6981665,essv6981666,essv6981667,essv6985634,essv6985635 M 771 1 0 "" BEC_314 nsv4094 3 164173818 164225951 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7047,nssv2428,nssv3211 M 9 0 3 "" NA12156,NA12878,NA18555 nsv508258 3 164174417 164202082 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622472,nssv618730 M 4 0 2 "" NA10860,NA18994 esv33540 3 164182019 164184246 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99787 S 51 0 1 "" 22086 esv33293 3 164184382 164187622 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93387 S 51 1 0 "" 22170 nsv10347 3 164199686 164207099 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv29022,nssv12283,nssv29065,nssv12518,nssv12344,nssv29119,nssv12297,nssv29213,nssv11644,nssv11694,nssv11613,nssv29194,nssv13073,nssv28708,nssv29122,nssv11999,nssv12282,nssv11718,nssv28772,nssv11649,nssv29173,nssv29009,nssv29087 M 31 0 23 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10847,NA11830,NA12155,NA12740,NA18502,NA18504,NA18517,NA18537,NA18552,NA18564,NA18572,NA18853,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19144,NA19173 esv33280 3 164200118 164204863 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101530,essv101156,essv101216,essv100715,essv96754,essv94409,essv95292,essv95768,essv99119,essv93705,essv96674,essv96604,essv97231,essv99968,essv93399,essv99305,essv97638 M 51 0 15 "" 21603,21618,21656,21659,21808,21872,21911,21938,21972,22011,22075,22086,22170,22275,22278 nsv515724 3 164209949 164369160 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv664578,nssv693640 M 2026 2 0 "" nsv509858 3 164213840 164219840 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618589,nssv621215 M 4 0 2 "" CHM,NA15510 nsv10348 3 164227023 164231102 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12548,nssv12313 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA12155,NA18504 nsv4095 3 164244411 164271033 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10371 S 9 0 1 "" NA18956 nsv509859 3 164319671 164325671 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623922 S 4 0 1 "" NA18994 esv34284 3 164340000 164429000 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6980200,essv6980201,essv6989155,essv6987736 M 771 0 1 "" NA18968 dgv626n27 3 164340180 164428536 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv460960,nsv460961 M 1557 0 2 "" HGDP00962,HGDP01180 nsv818184 3 164340180 164428536 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417510 S 112 0 1 "" NA18968 dgv1532e1 3 164344341 164432687 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1206,essv1720 M 271 0 0 "" NA18968 nsv524743 3 164457802 165068671 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700734 S 2026 0 1 "" nsv4096 3 164568551 164596447 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv346,nssv10372,nssv7048,nssv4693 M 9 4 0 "" NA12156,NA18956,NA19129,NA19240 nsv508964 3 164584018 164590023 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619343,nssv623393 M 4 2 0 "" NA10860,NA18994 nsv829779 3 164622332 164669933 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443211,nssv1443212 M 95 2 0 "" nsv507135 3 164674506 164680506 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621729,nssv622875 M 4 2 0 "" NA10860,NA18994 esv33827 3 164887884 164904802 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100735 S 51 0 1 "" 21656 nsv4097 3 164899337 164922953 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10373 S 9 1 0 "" NA18956 dgv129n6 3 164946870 164947183 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv236185,nsv236280 M 24 "" nsv4098 3 164959389 164994621 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv347 S 9 1 0 "" NA19240 nsv829780 3 165009090 165161610 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443213 S 95 1 0 "" nsv508259 3 165016458 165035844 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622473 S 4 0 1 "" NA18994 nsv829781 3 165083335 165244597 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443214 S 95 1 0 "" dgv1533e1 3 165085151 165392762 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv10124,esv308 M 271 0 0 "" NA19130 nsv436926 3 165132883 165149886 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv466807 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA07019 nsv517516 3 165144234 165147919 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698138,nssv669605,nssv657618,nssv656043,nssv689097,nssv660870,nssv681768,nssv654346,nssv680539,nssv652250,nssv675006,nssv680001 M 2026 0 12 "" nsv437895 3 165145093 165146987 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv467866,nssv467865 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA07019,NA07056 nsv10349 3 165150929 165155381 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28802 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA10847 nsv460965 3 165196253 165296454 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537435 S 1557 1 0 "" NINDS_200 nsv236949 3 165211532 165212062 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255527 M 24 "" nsv520501 3 165315690 165445187 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697457 S 2026 0 1 "" nsv829783 3 165317576 165466440 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443215 S 95 1 0 "" nsv10351 3 165325444 165327734 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv29152 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18980 nsv460966 3 165434588 165487514 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537436 S 1557 0 1 "" NINDS_178 nsv509860 3 165545614 165551614 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621216 S 4 0 1 "" NA15510 nsv518351 3 165558900 165562136 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695779 S 2026 0 1 "" nsv523243 3 165571366 165575688 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698972 S 2026 0 1 "" nsv525280 3 165583895 165592079 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701383 S 2026 0 1 "" nsv509861 3 165584281 165590281 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623923 S 4 0 1 "" NA18994 nsv236203 3 165638308 165638367 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv254781 M 24 "" nsv515852 3 165707852 165735925 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv658457,nssv665209,nssv652208,nssv677244,nssv655010,nssv680917 M 2026 0 6 "" nsv4100 3 165783455 165811725 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4694 S 9 0 1 "" NA19129 nsv829784 3 165834470 166061285 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443217,nssv1443216 M 95 1 1 "" nsv509862 3 165859236 165865236 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621217 S 4 0 1 "" NA15510 nsv460968 3 165862731 165897911 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537437 S 1557 0 1 "" 1782681091_A nsv526927 3 165897329 165897911 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703292 S 2026 0 1 "" nsv521011 3 166006961 166030866 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv690105,nssv679804 M 2026 0 2 "" nsv829785 3 166061286 166197480 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443219 S 95 0 1 "" nsv509863 3 166091927 166097927 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621218 S 4 0 1 "" NA15510 nsv509864 3 166140278 166146278 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623924 S 4 0 1 "" NA18994 nsv518452 3 166230632 166279342 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695889 S 2026 0 1 "" nsv4101 3 166333716 166367746 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7893 S 9 1 0 "" NA12156 nsv10352 3 166514232 166566280 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv29224 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA11830 dgv1534e1 3 166523565 166615499 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv19055,esv1250,essv19740 M 271 0 0 "" NA10859,NA11830 nsv441848 3 166523814 166564641 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv1535e1 3 166523818 166545470 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv19878,essv23322 M 271 0 0 "" NA11881,NA12264 nsv515674 3 166531653 166559994 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv659275,nssv659614,nssv678794,nssv662205,nssv677277,nssv651748,nssv666879,nssv683807,nssv686500,nssv666519,nssv670632,nssv682331,nssv664902,nssv691526,nssv693262,nssv651677,nssv669250,nssv651964,nssv683715,nssv665711,nssv657055,nssv652479,nssv656494,nssv686917,nssv675368,nssv683862,nssv689043,nssv658302,nssv703955,nssv687366,nssv661567,nssv680018,nssv662630 M 2026 0 33 "" nsv818185 3 166531653 166559994 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418056,nssv1418055,nssv1417327 M 112 0 3 "" NA10859,NA11881,NA12264 nsv460971 3 166531653 166766450 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537438 S 1557 1 0 "" 1787431197_A nsv437896 3 166539055 166547862 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv467868,nssv467867 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA10859,NA11881 nsv460972 3 166567245 166581615 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537439 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01317 nsv10353 3 166607897 166610855 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11643 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA07048 nsv460974 3 166741712 166772126 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537440 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01411 nsv10354 3 166744697 166779330 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv29117 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18853 nsv437348 3 166746398 166781796 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467229 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18872 nsv818186 3 166747891 166750610 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417010 S 112 0 1 "" NA06994 nsv517496 3 166747891 166772126 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv659538,nssv669673,nssv680002,nssv688665,nssv691026,nssv656288,nssv677245,nssv693575,nssv654211,nssv658257,nssv665538,nssv690159,nssv701425,nssv667826,nssv690916,nssv690049,nssv688888,nssv653577,nssv658073,nssv654591,nssv666855,nssv671234,nssv656186,nssv654019,nssv662821,nssv683213,nssv684910,nssv670657,nssv684698,nssv688799,nssv669158,nssv676938,nssv668295,nssv658022,nssv683762,nssv681741,nssv684030,nssv666156,nssv665905,nssv656547,nssv671476,nssv690408 M 2026 0 42 "" nsv818187 3 166747891 166772126 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418260,nssv1417847,nssv1417846,nssv1418258 M 112 0 4 "" NA18853,NA18854,NA19092,NA19094 nsv818188 3 166747891 166797077 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416329,nssv1416330 M 112 0 2 "" NA18855,NA18857 nsv442881 3 166751822 166779817 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv10355 3 166766310 166806053 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv29243 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19007 nsv437897 3 166797077 166802843 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv467870,nssv467871,nssv467872,nssv467873,nssv467869 M 269 0 5 Samples from several populations that are part of the HapMap project. "" NA07056,NA10863,NA11840,NA12740,NA12801 nsv521681 3 166819544 166819804 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698299 S 2026 0 1 "" nsv520596 3 166987879 167350180 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694018,nssv672965,nssv694618 M 2026 2 1 "" nsv4102 3 167233363 167268765 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3212 S 9 1 0 "" NA12878 nsv829786 3 167245828 167447096 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443220 S 95 0 1 "" nsv522310 3 167268728 167424315 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695090 S 2026 1 0 "" nsv236646 3 167338924 167339074 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255224 M 24 "" nsv818190 3 167350180 167367754 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418057 S 112 0 1 "" NA10859 nsv520434 3 167365776 167612847 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv677154,nssv671376 M 2026 0 2 "" nsv460977 3 167404518 167475432 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537441 S 1557 0 1 "" NINDS_91 nsv442882 3 167539443 167547522 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv4103 3 167546166 167575438 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4695 S 9 1 0 "" NA19129 nsv442883 3 167573303 167576891 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv460982 3 167786893 167902746 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537442 S 1557 0 1 "" NINDS_183 nsv4104 3 167786901 167821442 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3114 S 9 1 0 "" NA18555 nsv518173 3 167825401 167826502 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695594 S 2026 0 1 "" nsv526769 3 167825401 167826502 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703121 S 2026 1 0 "" nsv510939 3 167847305 167897267 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621567 S 4 0 0 "" NA15510 nsv507136 3 167879900 167885900 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621730,nssv617618 M 4 2 0 "" CHM,NA10860 nsv523505 3 167914253 167914869 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699276 S 2026 0 1 "" nsv508261 3 167959092 167979605 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619927 S 4 0 1 "" NA15510 nsv518359 3 167999952 168016129 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695786 S 2026 1 0 "" nsv441849 3 168005545 168013645 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv525395 3 168005549 168016129 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701518 S 2026 0 1 "" nsv818191 3 168005549 168016129 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416649 S 112 1 0 "" NA12043 nsv515786 3 168079776 168111055 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv687452,nssv664781 M 2026 0 2 "" nsv4105 3 168923998 168954563 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2429 S 9 1 0 "" NA18555 nsv460986 3 169024684 169077653 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537443 S 1557 0 1 "" NINDS_221 nsv10356 3 169035430 169040291 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12960 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19221 nsv10357 3 169045091 169049565 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12990 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19221 nsv522926 3 169118520 169157400 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698588 S 2026 0 1 "" nsv829787 3 169224520 169423078 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443221 S 95 1 0 "" nsv829788 3 169650092 169826790 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443222,nssv1443223 M 95 0 2 "" nsv829789 3 169744825 169949694 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443224 S 95 1 0 "" dgv1536e1 3 169771716 169985812 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv414,essv6724 M 271 0 0 "" NA18608 nsv520411 3 169862605 169865990 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv671235,nssv693696 M 2026 0 2 "" nsv4106 3 169871567 169898566 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10374 S 9 1 0 "" NA18956 nsv4107 3 169892827 169937742 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7894 S 9 0 1 "" NA12156 nsv829790 3 170074367 170264460 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443225 S 95 0 1 "" nsv7356 3 170335137 179489605 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9632 S 9 0 0 "" NA18507 nsv528819 3 170580638 170581694 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705493 S 2026 0 1 "" nsv4108 3 170589207 170607280 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3213 S 9 1 0 "" NA12878 nsv829791 3 170598524 170623030 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443245,nssv1443246,nssv1443248,nssv1443227,nssv1443234,nssv1443226,nssv1443247,nssv1443233,nssv1443228,nssv1443230,nssv1443232,nssv1443231,nssv1443249,nssv1443235,nssv1443236,nssv1443237,nssv1443238,nssv1443239,nssv1443241,nssv1443242,nssv1443244,nssv1443243 M 95 0 22 "" nsv829792 3 170626270 170771118 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443250 S 95 0 1 "" nsv508965 3 170728926 170757877 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623394 S 4 1 0 "" NA18994 nsv4109 3 170749173 170758022 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3115 S 9 1 0 "" NA18555 nsv4111 3 170823717 170869844 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7049 S 9 0 1 "" NA12156 esv2422204 3 170836648 171075574 CNV Deletion Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161467 S 181 0 1 "" ND03834 nsv460987 3 170992354 171141972 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537444 S 1557 0 1 "" NINDS_230 nsv237474 3 171028121 171030867 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv256052 M 24 "" nsv521906 3 171144788 171149134 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694678 S 2026 1 0 "" esv32986 3 171431800 171433895 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv94473,essv97024,essv95677 M 51 3 0 "" 21808,21817,21841 nsv4112 3 171444037 171489484 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7050 S 9 0 1 "" NA12156 nsv236549 3 171512758 171513438 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255127 M 24 "" nsv519286 3 171571150 171574604 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696767 S 2026 0 1 "" nsv509865 3 171635578 171641578 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622035 S 4 0 1 "" NA10860 nsv4113 3 171811961 171841583 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10375 S 9 1 0 "" NA18956 nsv4114 3 171926149 171959628 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3116 S 9 1 0 "" NA18555 nsv236991 3 172206740 172206799 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255569 M 24 "" nsv509866 3 172222842 172228842 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618590 S 4 0 1 "" CHM nsv4115 3 172493854 172503213 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3214 S 9 1 0 "" NA12878 nsv460988 3 172544588 172560533 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537445 S 1557 0 1 "" 1780862229_A nsv238001 3 172787150 172787150 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv256579 M 24 "" nsv518951 3 173076042 173163215 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696418 S 2026 0 1 "" nsv4116 3 173255274 173279698 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10376 S 9 1 0 "" NA18956 nsv522798 3 173536366 173538509 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698443 S 2026 0 1 "" nsv528737 3 173605169 173605223 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705393 S 2026 0 1 "" nsv829794 3 173642053 173808395 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443252 S 95 1 0 "" nsv4117 3 173736279 173751681 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7895 S 9 0 1 "" NA12156 nsv520204 3 173740065 173740833 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv661765,nssv676472 M 2026 0 2 "" nsv523303 3 173750421 173759456 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699043 S 2026 0 1 "" nsv520203 3 173756146 173756214 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697279 S 2026 0 1 "" nsv521445 3 173756214 173759456 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698056 S 2026 0 1 "" nsv518689 3 173758598 173759456 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696140 S 2026 0 1 "" nsv236932 3 173805653 173812919 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255510 M 24 "" dgv627n27 3 173822454 173880570 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv460990,nsv460991 M 1557 2 0 "" HGDP01037,HGDP01056 nsv4118 3 173838957 173869584 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv348 S 9 1 0 "" NA19240 nsv518366 3 173906877 173911484 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695792 S 2026 0 1 "" nsv829795 3 174043845 174211714 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443253 S 95 1 0 "" nsv528967 3 174065304 174074061 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705666 S 2026 0 1 "" nsv4119 3 174283139 174328485 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7051 S 9 0 1 "" NA12156 nsv519482 3 174298442 174300308 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696876 S 2026 0 1 "" dgv1537e1 3 174622697 174928079 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv18243,esv781 M 271 0 0 "" NA12057 nsv4120 3 174642098 174674809 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3216 S 9 1 0 "" NA12878 essv15193 3 174683883 174693754 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18504 nsv10358 3 174687213 174702078 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12343 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18504 essv8020 3 174692394 174755275 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18871 nsv442884 3 174692483 174698436 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv628n27 3 174712476 174782368 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv460993,nsv460994,nsv460992 M 1557 3 0 "" HGDP00857,HGDP00869,HGDP00875 dgv304n21 3 174712476 174792541 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv520397,nsv517544 M 2026 34 0 "" nsv10359 3 174721903 174774087 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12578 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA12155 nsv441850 3 174723337 174772382 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv629n27 3 174729515 174783739 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv461004,nsv461016,nsv461007,nsv461013,nsv460998,nsv461011,nsv461001,nsv461014,nsv461015,nsv461005,nsv461008,nsv460996,nsv461002,nsv461010,nsv460999,nsv461009,nsv461003,nsv461000,nsv461012,nsv460997 M 1557 20 0 "" HGDP00139,HGDP00169,HGDP00210,HGDP00234,HGDP00336,HGDP00402,HGDP00428,HGDP00444,HGDP00527,HGDP00859,HGDP00864,HGDP00868,HGDP00888,HGDP00949,HGDP01009,HGDP01044,HGDP01058,HGDP01228,HGDP01362,HGDP01383 esv33113 3 174733014 174770350 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100054 S 51 1 0 "" 22086 nsv238018 3 174751122 174751179 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv256596 M 24 "" nsv818192 3 174754386 174771983 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416229,nssv1416145 M 112 2 0 "" NA12057,NA12892 nsv829796 3 174785046 174970249 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443254 S 95 1 0 "" nsv236399 3 174981649 174987569 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv254977 M 24 "" dgv305n21 3 175057219 175453505 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv518882,nsv526128 M 2026 2 0 "" nsv4122 3 175146638 175190849 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2430 S 9 0 1 "" NA18555 nsv507137 3 175243861 175249861 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621731 S 4 1 0 "" NA10860 nsv520908 3 175284453 176016636 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697682 S 2026 0 1 "" nsv4123 3 175334389 175368260 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4697 S 9 1 0 "" NA19129 nsv461018 3 175336486 175375740 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537473 S 1557 0 1 "" NINDS_142 nsv829797 3 175486831 175658534 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443255 S 95 1 0 "" nsv518940 3 175508565 175544785 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696407 S 2026 0 1 "" nsv507138 3 175525436 175531436 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617619 S 4 1 0 "" CHM nsv515787 3 175560333 175560651 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv678195,nssv664782 M 2026 0 2 "" nsv4124 3 175661784 175678810 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7896 S 9 0 1 "" NA12156 nsv4125 3 175782382 175816098 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7897 S 9 0 1 "" NA12156 nsv507139 3 175818178 175824178 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622876 S 4 1 0 "" NA18994 nsv528019 3 175900614 175909411 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704548 S 2026 0 1 "" nsv507140 3 175958989 175964989 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621732,nssv617620 M 4 2 0 "" CHM,NA10860 nsv524082 3 175989474 176002558 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699951 S 2026 1 0 "" nsv524763 3 175993716 175999347 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700754 S 2026 0 1 "" nsv829798 3 176115640 176291574 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443257,nssv1443256 M 95 2 0 "" nsv829799 3 176200825 176380000 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443260,nssv1443259,nssv1443258,nssv1443261 M 95 4 0 "" nsv236658 3 176213495 176213756 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255236 M 24 "" nsv461021 3 176343737 176555304 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537474 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00112 nsv436927 3 176426300 176432387 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv466808 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA10830 nsv829800 3 176453121 176625373 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443264,nssv1443263 M 95 1 1 "" nsv525074 3 176487068 176487622 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701128 S 2026 0 1 "" nsv237834 3 176496584 176496584 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv256412 M 24 "" nsv510887 3 176535707 176602602 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622365,nssv621568 M 4 0 0 "" NA10860,NA15510 nsv437349 3 176552419 176577059 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467230 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19173 nsv10360 3 176560250 176569022 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv29039,nssv28748,nssv29052,nssv12608,nssv29204,nssv12373,nssv12231,nssv29182,nssv11748,nssv12029 M 31 0 10 Samples from several populations that are part of the HapMap project. "" NA07029,NA12155,NA18504,NA18537,NA18563,NA18564,NA18572,NA18860,NA18980,NA19173 nsv437898 3 176564669 176566101 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv467874,nssv467876 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA18622,NA18974 nsv526163 3 176569246 177225450 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702422 S 2026 0 1 "" nsv4126 3 176572869 176595179 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3217 S 9 1 0 "" NA12878 esv32881 3 176573124 177202567 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv92558 S 51 0 1 "" 22233 nsv461022 3 176616026 176659954 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537475 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00740 nsv818193 3 176652431 176658338 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417211 S 112 1 0 "" NA18558 nsv829801 3 176653301 176817058 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443265 S 95 1 0 "" nsv461023 3 176654117 176670135 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537476 S 1557 0 1 "" 1780862109_A nsv509867 3 176807655 176813655 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623925 S 4 0 1 "" NA18994 nsv507141 3 176822609 176828609 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620232 S 4 1 0 "" NA15510 nsv523336 3 176883919 176897877 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699082 S 2026 0 1 "" nsv516781 3 177056458 177069699 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv670805,nssv687727 M 2026 0 2 "" nsv4127 3 177162066 177205821 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4698,nssv3117 M 9 2 0 "" NA18555,NA19129 dgv1538e1 3 177275752 177516301 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv10424,esv22,essv10797 M 271 0 0 "" NA18523,NA19222 dgv630n27 3 177366877 177408118 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv461025,nsv461024 M 1557 0 2 "" HGDP00517,HGDP01254 nsv516429 3 177366877 177440561 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv659145,nssv677408,nssv684508,nssv673110,nssv656616,nssv667688,nssv676612,nssv671829,nssv681381,nssv661568,nssv663414,nssv658258,nssv687115,nssv660692,nssv658741,nssv672680,nssv672966,nssv660018,nssv678124,nssv681784,nssv681309,nssv652909,nssv666157,nssv673363,nssv659615,nssv660357,nssv689612,nssv691557,nssv669136,nssv652694,nssv686467,nssv661073,nssv692191,nssv667773,nssv679362,nssv676962,nssv671130,nssv671093,nssv692520,nssv687009,nssv654135,nssv690632,nssv661303,nssv669037,nssv675733,nssv694019,nssv691795,nssv691459,nssv655287,nssv678399,nssv656309,nssv681045,nssv668435,nssv660290,nssv673128,nssv685299,nssv672533,nssv687669,nssv676810,nssv679025,nssv663265 M 2026 13 48 "" esv33171 3 177369960 177393934 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101412,essv96526 M 51 0 2 "" 21805,22261 nsv818194 3 177371932 177390044 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416672 S 112 0 1 "" NA06985 nsv437899 3 177379280 177412376 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv467877 S 269 0 1 Samples from several populations that are part of the HapMap project. "" NA18523 nsv527268 3 177403586 177448052 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703676 S 2026 0 1 "" nsv508966 3 177419964 177444988 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623395 S 4 1 0 "" NA18994 nsv4128 3 177421251 177454037 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2431,nssv350 M 9 2 0 "" NA18555,NA19240 nsv829802 3 177441013 177612226 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443266 S 95 0 1 "" nsv4129 3 177454456 177489403 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv351 S 9 1 0 "" NA19240 nsv10362 3 177459600 177475110 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13020 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19221 nsv509868 3 177620185 177626185 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622036,nssv618591,nssv623926,nssv621219 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv518238 3 177671688 177695210 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695670 S 2026 0 1 "" nsv236526 3 177988799 177988920 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255104 M 24 "" esv2751983 3 177989891 178166136 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6988838,essv6984705,essv6984706,essv6987655 M 771 1 0 "" SPC_167 nsv236867 3 178058382 178058382 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255445 M 24 "" nsv441851 3 178176291 178191504 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv1539e1 3 178177234 178198620 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv15967,essv7875,esv1385,essv13372 M 271 0 0 "" NA19140,NA19142,NA19159 nsv518453 3 178203482 178393296 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695890 S 2026 1 0 "" nsv829803 3 178249077 178443513 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443267,nssv1443268 M 95 2 0 "" nsv508967 3 178466212 178511590 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623396 S 4 1 0 "" NA18994 nsv4130 3 178710064 178742733 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2432 S 9 1 0 "" NA18555 nsv10363 3 178775706 178780671 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11673,nssv29013 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA07048,NA10863 nsv4131 3 178849251 178882003 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv352 S 9 0 1 "" NA19240 nsv10364 3 178859732 178872771 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13050 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19221 esv33749 3 178866172 178872559 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv96944,essv93232,essv99621 M 51 0 3 "" 21817,22170,22217 nsv523331 3 179018450 179036906 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699077 S 2026 1 0 "" nsv4133 3 179031681 179066348 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3118 S 9 1 0 "" NA18555 nsv829805 3 179144815 179287705 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443269 S 95 1 0 "" nsv4134 3 179231619 179244218 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9633 S 9 1 0 "" NA18507 nsv4135 3 179325259 179370007 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7898 S 9 0 1 "" NA12156 nsv237179 3 179379200 179379257 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255757 M 24 "" nsv4136 3 179586727 179631981 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7899 S 9 0 1 "" NA12156 nsv521950 3 179602071 179610526 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694719 S 2026 1 0 "" nsv525869 3 179602071 179637217 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702069 S 2026 1 0 "" nsv4137 3 179621239 179638407 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10377 S 9 1 0 "" NA18956 nsv524447 3 179740291 179838971 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700380 S 2026 1 0 "" nsv515673 3 179793538 179798254 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv679439,nssv664336,nssv659992 M 2026 0 3 "" nsv237839 3 179960220 179960371 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv256417 M 24 "" nsv236354 3 180032833 180033573 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv254932 M 24 "" nsv461026 3 180144516 180369311 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537479 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00100 nsv524471 3 180380376 180385966 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700409 S 2026 0 1 "" nsv829806 3 180435065 180637075 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443270 S 95 1 0 "" nsv4138 3 180536135 180570686 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3120 S 9 1 0 "" NA18555 nsv4139 3 180585286 180618493 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2433 S 9 1 0 "" NA18555 nsv437900 3 180770981 180772795 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv467878,nssv467879 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA10851,NA12057 nsv4140 3 180866663 180912406 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7053 S 9 0 1 "" NA12156 nsv522327 3 180900678 180903368 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695108 S 2026 0 1 "" dgv78n68 3 181010269 181237023 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH nsv829807,nsv829808 M 95 3 0 "" nsv236140 3 181101769 181101820 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv254718 M 24 "" dgv20e24 3 181136123 181137532 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH esv2750492,esv2750497,esv2750603,esv2750657,esv2750694,esv2750709,esv2750727 M 51 0 7 "" 21618,21634,21656,21805,21841,21944,22352 esv33250 3 181171101 181171487 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv95737 S 51 0 1 "" 21841 esv33044 3 181171487 181174643 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv96943,essv95584,essv97121,essv100021,essv93289 M 51 0 5 "" 21817,21841,22075,22086,22170 nsv4141 3 181272592 181305680 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7900 S 9 1 0 "" NA12156 nsv461027 3 181550294 181554688 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537480 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00206 nsv516634 3 181654291 181667316 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv690800,nssv671719,nssv669754,nssv669975,nssv685300 M 2026 0 5 "" nsv509869 3 181818187 181824187 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622037,nssv621220,nssv618592 M 4 0 3 "" CHM,NA10860,NA15510 nsv237915 3 181958367 181958468 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv256493 M 24 "" dgv1540e1 3 182334298 182489344 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv15204,essv7568,essv4585,esv418,essv17345 M 271 0 0 "" NA18524,NA18545,NA18856,NA19094 nsv236619 3 182334577 182334638 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255197 M 24 "" nsv437350 3 182362580 182373658 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467231 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18860 nsv829809 3 182374976 182548911 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443275 S 95 0 1 "" nsv236637 3 182444605 182444932 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255215 M 24 "" nsv829810 3 182601638 182774093 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443277,nssv1443276 M 95 1 1 "" nsv522902 3 182730499 182733420 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698560 S 2026 0 1 "" nsv509870 3 182771515 182777515 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618593 S 4 0 1 "" CHM nsv509871 3 182775605 182781605 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623928 S 4 0 1 "" NA18994 nsv237506 3 182943412 182943497 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv256084 M 24 "" nsv507142 3 183058707 183064707 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621733,nssv617621 M 4 2 0 "" CHM,NA10860 nsv829811 3 183341596 183529404 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443278 S 95 1 0 "" nsv461030 3 183391639 183446091 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537482 S 1557 0 1 "" 1780854537_A dgv306n21 3 183556605 183642129 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv522175,nsv519493 M 2026 2 0 "" nsv508262 3 183680885 183698325 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622474 S 4 0 1 "" NA18994 dgv307n21 3 183724583 183727923 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv524864,nsv527442 M 2026 0 2 "" nsv522562 3 183727923 183748348 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705945 S 2026 0 1 "" nsv237763 3 183927881 183927967 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv256341 M 24 "" nsv461031 3 184139312 184225969 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537483 S 1557 0 1 "" 1780854339_A nsv508968 3 184174897 184264048 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623397,nssv620775,nssv619344 M 4 3 0 "" NA10860,NA15510,NA18994 esv32850 3 184269753 184269914 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99890 S 51 0 1 "" 22086 nsv508970 3 184326654 184413709 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619345,nssv620776 M 4 2 0 "" NA10860,NA15510 nsv507143 3 184351101 184357101 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622877,nssv617622 M 4 2 0 "" CHM,NA18994 nsv4142 3 184511450 184543490 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4699 S 9 1 0 "" NA19129 nsv522644 3 184596710 184608056 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv706044 S 2026 0 1 "" nsv517754 3 184600593 184608056 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv655864,nssv653122,nssv654592,nssv691389,nssv678370,nssv673682,nssv688593,nssv690553,nssv682453 M 2026 0 9 "" nsv4144 3 184704942 184750778 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7054 S 9 0 1 "" NA12156 nsv507144 3 184950975 184956975 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622878,nssv621734,nssv620233 M 4 3 0 "" NA10860,NA15510,NA18994 nsv524639 3 185018465 185020461 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700604 S 2026 0 1 "" nsv520163 3 185044978 185059302 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697257 S 2026 1 0 "" nsv515691 3 185095158 185117294 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv680977,nssv664434,nssv684835 M 2026 0 3 "" nsv818195 3 185104693 185116276 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417197 S 112 0 1 "" NA18558 nsv520094 3 185109791 185120547 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694363 S 2026 0 1 "" nsv4145 3 185224234 185257447 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7901 S 9 1 0 "" NA12156 nsv829812 3 185337145 185502792 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443280,nssv1443279,nssv1443281 M 95 0 3 "" nsv528639 3 185428976 185463118 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705270 S 2026 0 1 "" nsv4146 3 185453096 185485706 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10380 S 9 1 0 "" NA18956 nsv829813 3 185465487 185628486 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443282 S 95 0 1 "" esv2422400 3 185499985 185626203 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161275 S 181 1 0 "" ND04568 nsv518580 3 185589195 185603513 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696024 S 2026 0 1 "" nsv829814 3 185604562 185822605 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443287,nssv1443288,nssv1443286,nssv1443285,nssv1443283 M 95 0 5 "" dgv130n6 3 185608075 185608273 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv237630,nsv238035 M 24 "" nsv508971 3 185621166 185654281 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619347,nssv620777,nssv623398 M 4 3 0 "" NA10860,NA15510,NA18994 nsv526521 3 185627348 185640584 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702832 S 2026 0 1 "" nsv4147 3 185631962 185668206 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7902,nssv9876,nssv2434,nssv3218 M 9 4 0 "" NA12156,NA12878,NA18507,NA18555 nsv461032 3 185647319 185746375 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537484 S 1557 1 0 "" NINDS_254 nsv527985 3 185664510 185734105 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704504 S 2026 1 0 "" nsv516188 3 185672335 185676890 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv678969,nssv666677,nssv672141,nssv658153,nssv667180,nssv681913,nssv681199,nssv696600 M 2026 1 7 "" nsv461033 3 185685733 185715166 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537485 S 1557 0 1 "" 1780862437_A nsv508972 3 185739201 185816854 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619348 S 4 1 0 "" NA10860 nsv461034 3 185739500 185814148 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537486 S 1557 0 1 "" NINDS_70 nsv522464 3 185818343 185824215 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705828 S 2026 0 1 "" nsv829816 3 185822628 186011816 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443289 S 95 0 1 "" nsv508973 3 185854127 185961553 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619349 S 4 1 0 "" NA10860 nsv520816 3 186055843 186063619 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697628 S 2026 1 0 "" nsv521893 3 186318784 186322154 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694665 S 2026 0 1 "" nsv829817 3 186427615 186609877 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443290 S 95 1 0 "" nsv441852 3 186584124 186589719 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv237556 3 186595867 186601395 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv256134 M 24 "" nsv829818 3 186612235 186768130 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443291 S 95 0 1 "" nsv237078 3 186739229 186739316 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255656 M 24 "" nsv4148 3 186793396 186825606 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10381 S 9 1 0 "" NA18956 nsv461035 3 187137626 187163288 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537487 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01300 nsv4149 3 187146343 187178238 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10382 S 9 1 0 "" NA18956 nsv529015 3 187159052 187163288 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705726 S 2026 1 0 "" nsv523839 3 187164831 187166605 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699671 S 2026 0 1 "" nsv237777 3 187326059 187326878 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv256355 M 24 "" nsv4150 3 187408123 187420198 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9634 S 9 1 0 "" NA18507 nsv4151 3 187610141 187643621 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7903 S 9 1 0 "" NA12156 nsv4152 3 187675134 187695363 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2435 S 9 1 0 "" NA18555 nsv461036 3 187678025 187711925 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537488 S 1557 0 1 "" 1780854205_A nsv508974 3 187801949 187901892 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619350 S 4 1 0 "" NA10860 dgv1541e1 3 187819836 188050028 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv20888,esv518,essv19961 M 271 0 0 "" NA12801,NA12813 nsv4153 3 187826196 187866455 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv353,nssv2436,nssv4700 M 9 3 0 "" NA18555,NA19129,NA19240 nsv525368 3 187847845 187848011 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701488 S 2026 0 1 "" essv25049 3 187853052 187897578 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12801 nsv436928 3 187857373 187902872 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv466809 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA12801 nsv516553 3 187870001 187902872 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv680455,nssv671106,nssv669119,nssv660131,nssv680617,nssv690610,nssv689980,nssv681957 M 2026 0 8 "" nsv818196 3 187870001 187902872 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416046,nssv1416047 M 112 0 2 "" NA12801,NA12813 essv23735 3 187870001 187910042 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12813 nsv437901 3 187872261 187878274 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv467882,nssv467883,nssv467881,nssv467880 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA12801,NA12813 esv32646 3 187890775 187901892 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv96956,essv94603,essv96202,essv93372 M 51 0 4 "" 21817,21932,22007,22170 nsv436930 3 187893277 187902872 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv466811 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA10838 nsv436929 3 187893277 187910763 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv466810 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA07348 nsv442885 3 187895563 187898222 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv10365 3 187988581 187992741 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12403,nssv29095 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18504,NA19144 nsv526938 3 187988602 187990624 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703306 S 2026 1 0 "" nsv508263 3 188036970 188125430 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618731,nssv617483,nssv619928 M 4 0 3 "" CHM,NA10860,NA15510 nsv4155 3 188050578 188099807 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2437,nssv354,nssv11071,nssv7904,nssv3219,nssv4701 M 9 0 6 "" NA12156,NA12878,NA15510,NA18555,NA19129,NA19240 nsv246 3 188056994 188080911 CNV Loss Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv246 S 1 0 1 "" NA15510 dgv1542e1 3 188092436 188266986 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2517,esv39 M 271 0 0 "" NA19003 nsv508975 3 188137112 188187344 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623399 S 4 1 0 "" NA18994 nsv519618 3 188258855 188261530 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv676427,nssv657082 M 2026 0 2 "" nsv4156 3 188270653 188315880 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7905 S 9 0 1 "" NA12156 nsv4157 3 188295340 188330140 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv355 S 9 1 0 "" NA19240 nsv4158 3 188367308 188398334 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10383 S 9 1 0 "" NA18956 nsv508264 3 188370131 188427199 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619929 S 4 0 1 "" NA15510 nsv521201 3 188548322 188551885 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv685000,nssv687563 M 2026 2 0 "" nsv7357 3 188580795 188666552 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4702,nssv4703,nssv9635,nssv356,nssv10384,nssv9387,nssv7055,nssv2438 M 9 0 0 "" NA12156,NA18507,NA18517,NA18555,NA18956,NA19129,NA19240 esv2751986 3 188619371 188725000 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6983201,essv6983202,essv6986368,essv6983200 M 771 1 0 "" BEC_554 nsv4159 3 188700603 188745452 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4705 S 9 0 1 "" NA19129 dgv1543e1 3 189069542 189083061 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1085,essv5607 M 271 0 0 "" NA18593 nsv526329 3 189069704 189088017 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702619 S 2026 0 1 "" dgv631n27 3 189069704 189088504 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv461044,nsv461043,nsv461040,nsv461041,nsv461038,nsv461042,nsv461037 M 1557 7 0 "" HGDP00124,HGDP00125,HGDP00768,HGDP00779,HGDP00952,HGDP01209,HGDP01347 nsv818197 3 189069704 189088504 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417274 S 112 1 0 "" NA18593 nsv461045 3 189069704 189098564 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537497 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00973 nsv4160 3 189251002 189261349 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3121 S 9 1 0 "" NA18555 esv2751987 3 189325423 189490000 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6983003,essv6983002,essv6983001,essv6983000,essv6986319 M 771 1 0 "" BEC_532 nsv461046 3 189406417 189608043 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537498 S 1557 0 1 "" 1780862101_A nsv4161 3 189427525 189439674 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3220 S 9 1 0 "" NA12878 esv33400 3 189561216 189883113 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99405 S 51 1 0 "" 22335 nsv461047 3 189591704 189675088 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537499 S 1557 0 1 "" 1798860251_A nsv236225 3 189787534 189787866 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv254803 M 24 "" nsv4162 3 189940734 189965149 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9636 S 9 1 0 "" NA18507 nsv4163 3 190156805 190201951 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4706 S 9 0 1 "" NA19129 nsv829819 3 190327158 190481110 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443292 S 95 1 0 "" nsv236710 3 190478195 190482706 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255288 M 24 "" nsv4164 3 190560817 190600560 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2439,nssv357 M 9 0 2 "" NA18555,NA19240 nsv509872 3 190645101 190651101 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623929,nssv622038,nssv618594 M 4 0 3 "" CHM,NA10860,NA18994 nsv4166 3 190673873 190718545 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7906 S 9 0 1 "" NA12156 nsv508265 3 190836730 190860686 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622475 S 4 0 1 "" NA18994 nsv4167 3 190839295 190862883 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2440 S 9 0 1 "" NA18555 esv32548 3 190842104 190842272 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv94133 S 51 0 1 "" 21802 dgv78n17 3 190844641 190853716 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437352,nsv437351 M 60 0 2 "" NA18854,NA19221 esv32915 3 190844656 190853617 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101466,essv101092,essv94660,essv95560,essv99111,essv96074,essv99617,essv94938,essv100154,essv98432 M 51 0 10 "" 21603,21693,21791,21847,21938,22127,22217,22231,22286,22352 nsv10366 3 190845504 190853765 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv29149,nssv29082,nssv13080,nssv12463,nssv29234,nssv11724,nssv11808 M 31 0 7 Samples from several populations that are part of the HapMap project. "" NA18504,NA18537,NA18563,NA18564,NA18942,NA18975,NA19221 nsv442887 3 190846380 190847340 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv437902 3 190846796 190850351 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv467893,nssv467884,nssv467891,nssv467888,nssv467887,nssv467885,nssv467890,nssv467892,nssv467889 M 269 0 9 Samples from several populations that are part of the HapMap project. "" NA18503,NA18504,NA18547,NA18570,NA18609,NA18612,NA18944,NA18949,NA19211 nsv517128 3 190848126 190848272 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv661688,nssv664783,nssv652104,nssv679052,nssv670938,nssv687699,nssv686402,nssv687717,nssv668050,nssv682465,nssv655333,nssv689072,nssv676428,nssv671023,nssv662109,nssv676592,nssv652140,nssv653829,nssv675944,nssv673794,nssv678150,nssv668358,nssv691027,nssv656361,nssv678304,nssv655716,nssv662256 M 2026 0 27 "" nsv10367 3 190853765 190856478 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13133 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18972 nsv516668 3 191009879 191015852 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv673111,nssv670028 M 2026 0 2 "" nsv527224 3 191032125 191034122 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703624 S 2026 0 1 "" nsv527677 3 191215308 191221758 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704152 S 2026 0 1 "" nsv10368 3 191219291 191223734 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12059,nssv13140,nssv12312,nssv11467,nssv29112,nssv12327,nssv29179,nssv11679,nssv29147,nssv12374,nssv12638,nssv11486,nssv11674,nssv13163,nssv29069,nssv11477,nssv11821,nssv12493,nssv28808 M 31 14 5 Samples from several populations that are part of the HapMap project. "" NA07029,NA10839,NA11830,NA12155,NA12740,NA12872,NA18502,NA18504,NA18517,NA18537,NA18563,NA18853,NA18942,NA18972,NA19007,NA19132,NA19173,NA19221,NA19240 nsv437903 3 191220056 191222331 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv467912,nssv467915,nssv467918,nssv467902,nssv467896,nssv467913,nssv467895,nssv467911,nssv467906,nssv467904,nssv467901,nssv467910,nssv467898,nssv467899,nssv467907,nssv467916,nssv467914,nssv467909,nssv467905,nssv467894,nssv467903,nssv467900,nssv467917 M 269 0 23 Samples from several populations that are part of the HapMap project. "" NA18524,NA18537,NA18563,NA18579,NA18592,NA18611,NA18620,NA18623,NA18624,NA18633,NA18857,NA18858,NA18913,NA18914,NA18953,NA18969,NA18976,NA18991,NA19000,NA19127,NA19132,NA19205,NA19240 esv33775 3 191220070 191223723 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101453,essv101145,essv96770,essv101032,essv94018,essv94403,essv97834,essv95610,essv95396,essv97312,essv95875,essv92838,essv92799,essv93755,essv96212,essv96680,essv99678,essv94874,essv92509,essv97977,essv97747,essv100611,essv96398,essv94298 M 51 0 24 "" 21603,21618,21659,21693,21802,21808,21837,21841,21872,21879,21911,21939,21944,21972,22007,22011,22217,22231,22233,22259,22278,22298,22371,22394 nsv517071 3 191220897 191221758 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv670141,nssv684403,nssv691656,nssv692216,nssv663580,nssv660474,nssv672472,nssv682297,nssv655334,nssv691700,nssv690534,nssv676554,nssv693836,nssv692900,nssv692495,nssv690136,nssv692690,nssv675606,nssv669690,nssv675835,nssv654159,nssv687988,nssv675390,nssv687367,nssv679973,nssv656403,nssv681805,nssv684263,nssv691775,nssv678556,nssv665952,nssv659131,nssv658742,nssv662110,nssv677478,nssv677900,nssv674202,nssv653729,nssv666594,nssv667268,nssv668907,nssv669777,nssv693804,nssv655865,nssv672497,nssv673927,nssv678759,nssv654011,nssv664877,nssv690895,nssv670561,nssv660385,nssv685145,nssv689555,nssv672447,nssv657368,nssv679064,nssv654576,nssv686141,nssv667505,nssv679301,nssv654705,nssv663627,nssv662658,nssv687670,nssv670589,nssv662279,nssv685339,nssv658980,nssv677818,nssv683144,nssv665248,nssv683365,nssv662386,nssv685761,nssv667053,nssv664613,nssv674641,nssv665769,nssv688399,nssv688427,nssv679341,nssv678677,nssv655242,nssv678494,nssv681409,nssv688108,nssv654078,nssv684490,nssv693606,nssv676695,nssv658332,nssv654449,nssv687742,nssv672708,nssv679116,nssv686980,nssv676300,nssv661189,nssv655266,nssv670939,nssv682332,nssv669306,nssv674495,nssv668134,nssv685122,nssv672018,nssv664687,nssv655644,nssv685983,nssv656124,nssv681699,nssv653246,nssv677853,nssv669626,nssv656237,nssv651989,nssv665291,nssv664435,nssv667640,nssv659919,nssv691460,nssv661721 M 2026 2 121 "" nsv527011 3 191220897 191227323 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703386 S 2026 0 1 "" esv32747 3 191227807 191228227 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97780 S 51 1 0 "" 22278 nsv525254 3 191338445 191341825 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701349 S 2026 0 1 "" nsv524837 3 191386020 191392774 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700839 S 2026 0 1 "" nsv237227 3 191438111 191438411 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255805 M 24 "" nsv829820 3 191579972 191745037 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443293 S 95 1 0 "" nsv516391 3 191585690 191591158 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699359,nssv688072,nssv667996,nssv684509 M 2026 0 4 "" dgv131n6 3 191773342 191773649 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv238104,nsv237432 M 24 "" nsv4168 3 191870428 191903731 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7907 S 9 1 0 "" NA12156 nsv829821 3 191878104 192030536 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443294,nssv1443297 M 95 1 1 "" nsv507145 3 191953000 191959000 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621735 S 4 1 0 "" NA10860 nsv237053 3 191961161 191961336 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255631 M 24 "" nsv237437 3 191996146 191996146 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv256015 M 24 "" nsv818198 3 192002027 192009806 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416146 S 112 1 0 "" NA12892 nsv236956 3 192013666 192013666 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255534 M 24 "" nsv528581 3 192197200 192205125 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705200 S 2026 0 1 "" nsv516600 3 192266009 192269161 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv669479,nssv669648,nssv685169,nssv662736,nssv691233,nssv675581,nssv687010,nssv654863 M 2026 0 8 "" essv7531 3 192349713 192500458 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18545 dgv1544e1 3 192349713 192761809 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv8839,essv24847,essv882,essv5341,essv1209,essv11632,essv3395,essv21196,essv1824,essv10004,essv5291,essv12234,essv15147,essv15559,essv3866,essv18088,essv8134,essv18452,essv17032,essv409,essv20055,esv220,essv9360,essv23903,essv6306,essv2998,essv21372,essv9699,essv17141,essv5484,essv18728,essv18960,essv20329,essv20432,essv17563 M 271 0 0 "" NA07000,NA07048,NA10830,NA11830,NA11831,NA12005,NA12145,NA12236,NA12740,NA12762,NA12814,NA12874,NA18508,NA18563,NA18609,NA18624,NA18632,NA18853,NA18913,NA18945,NA18951,NA18971,NA18976,NA18981,NA18994,NA19000,NA19099,NA19101,NA19129,NA19137,NA19144,NA19154,NA19171,NA19206 nsv509873 3 192466439 192472439 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621221,nssv618595,nssv622039 M 4 0 3 "" CHM,NA10860,NA15510 nsv10369 3 192477476 192494149 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13170 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19221 nsv4169 3 192519000 192546167 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7908 S 9 0 1 "" NA12156 nsv10370 3 192528925 192532262 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11507 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18563 dgv632n27 3 192542024 192555930 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv461055,nsv461054,nsv461051,nsv461049,nsv461052,nsv461053 M 1557 0 6 "" HGDP00140,HGDP00191,HGDP00469,HGDP00898,HGDP01147,NINDS_232 nsv461056 3 192543916 192555930 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537506 S 1557 1 0 "" NINDS_50 nsv516440 3 192543916 192556408 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv655453,nssv681487,nssv678733,nssv658580,nssv678813,nssv660654,nssv682733,nssv662659,nssv683808,nssv656463,nssv687368,nssv663325,nssv658640,nssv692521,nssv683438,nssv663028,nssv679783,nssv656125,nssv679902,nssv661447,nssv673112,nssv673950,nssv658303,nssv663378,nssv668792,nssv677698,nssv693140,nssv686295,nssv670658,nssv671572,nssv674127,nssv680435,nssv662631,nssv678245,nssv690998,nssv677266,nssv691946,nssv686468,nssv686206,nssv659037,nssv692331,nssv704296,nssv673056,nssv693244,nssv652920,nssv680471,nssv664111,nssv653452,nssv688109,nssv670940,nssv680048,nssv659382,nssv658660,nssv683027,nssv673145,nssv678350,nssv663783,nssv660309,nssv691119,nssv652202,nssv691163,nssv654260,nssv691572,nssv697757,nssv686918,nssv676448,nssv653488,nssv662471,nssv661125,nssv683005,nssv668926,nssv687941,nssv693534,nssv667660,nssv679679,nssv668276,nssv656860,nssv671830,nssv658504,nssv691029,nssv675063,nssv685647,nssv690590,nssv686036,nssv679595,nssv652073,nssv691834,nssv679544,nssv658259,nssv666422,nssv663562,nssv686071,nssv659635,nssv683726,nssv655408,nssv672114,nssv659305,nssv668992,nssv664674,nssv671237,nssv693576,nssv672681,nssv660400,nssv654244,nssv680231,nssv665292,nssv666762,nssv685146,nssv675200,nssv668760,nssv679128,nssv692006,nssv681914,nssv675836,nssv659667,nssv678173,nssv691048,nssv686026,nssv680128,nssv657503,nssv677197,nssv674056,nssv661657,nssv662206,nssv652022,nssv665068,nssv675231,nssv653705,nssv658529,nssv680019,nssv684320,nssv691701,nssv674280,nssv694020,nssv652695,nssv659019,nssv658996,nssv677246,nssv672772,nssv680246,nssv679005,nssv664474,nssv663488,nssv675875,nssv691067,nssv658805,nssv688011,nssv684120,nssv655972,nssv673571,nssv683931,nssv660199,nssv672571,nssv677949,nssv672473,nssv690346,nssv691426,nssv674542,nssv651715,nssv668017,nssv674722,nssv669038,nssv665151,nssv660997,nssv673684,nssv665712,nssv674836,nssv666829,nssv687430,nssv675582,nssv679626,nssv689941,nssv676796,nssv653143,nssv664530,nssv687754,nssv667799,nssv662432,nssv692612,nssv675073,nssv678225,nssv660035,nssv691776,nssv659920,nssv668638,nssv687116,nssv681742,nssv667030,nssv662233,nssv670562,nssv670011,nssv681224,nssv658857,nssv671209,nssv653098,nssv663950,nssv664579,nssv685123,nssv686424,nssv689362,nssv675414,nssv654136,nssv652312,nssv661809,nssv678516,nssv659782,nssv651848,nssv678371,nssv673068,nssv661569,nssv675378,nssv675547,nssv667641,nssv689679,nssv673451,nssv669137,nssv681838,nssv666022,nssv667602,nssv679763,nssv661496,nssv666263,nssv659902,nssv653163,nssv686403,nssv690740,nssv684104,nssv677218,nssv655528,nssv684510,nssv690896,nssv678100,nssv690703,nssv688746,nssv666720,nssv675127,nssv660412,nssv654812,nssv658753,nssv656477,nssv653683,nssv653312,nssv668335,nssv652368,nssv676522,nssv674203,nssv664370,nssv673129,nssv690870,nssv665932,nssv689183,nssv676388,nssv677793,nssv686360,nssv657745,nssv671431,nssv689098,nssv682419,nssv661766,nssv688369,nssv687350,nssv692554,nssv663654,nssv688618,nssv679154,nssv685993,nssv684011,nssv657668,nssv670366,nssv682048,nssv678699,nssv681806,nssv666179,nssv686663,nssv676811,nssv675348,nssv693607,nssv663860,nssv671661,nssv659806,nssv682298,nssv655668,nssv671498,nssv660789,nssv656438,nssv651732,nssv658476,nssv693985,nssv678949,nssv670738,nssv668436,nssv657889,nssv687822,nssv672829,nssv689001,nssv693473,nssv684133,nssv669280,nssv684869,nssv678379,nssv655887,nssv691507,nssv674954,nssv688191,nssv673656,nssv687966,nssv684183,nssv652902,nssv670287,nssv679053,nssv688162,nssv675642,nssv652965,nssv661190,nssv692654,nssv692597,nssv653666,nssv655267,nssv663927,nssv668977,nssv689981,nssv676238,nssv677986,nssv687382,nssv679174,nssv670822,nssv666324,nssv656075,nssv671750,nssv675448,nssv655717,nssv683563,nssv692901,nssv652537,nssv661783,nssv655611,nssv672950,nssv681063,nssv687871,nssv687011,nssv655429,nssv673639,nssv655217,nssv662539,nssv671589,nssv668411,nssv684491,nssv672709,nssv688527,nssv693995,nssv678760,nssv672056,nssv673485,nssv666595,nssv656732,nssv681581,nssv686603,nssv689556,nssv671107,nssv663426,nssv668211,nssv681941,nssv674001,nssv680518,nssv682153,nssv679302,nssv691082,nssv681360,nssv655310,nssv675337,nssv654118,nssv677598,nssv682628,nssv687799,nssv659226,nssv669889,nssv684264,nssv682782,nssv663628,nssv682848,nssv691587,nssv666630,nssv666300,nssv655774,nssv684211,nssv658624,nssv687766,nssv652119,nssv691253,nssv688687,nssv673167,nssv664359,nssv686683,nssv678329,nssv656099,nssv685540,nssv653750,nssv689873,nssv679088,nssv653436,nssv666653,nssv670453,nssv662862,nssv666287,nssv687671,nssv662737,nssv657938,nssv660132,nssv679202,nssv686264,nssv675705,nssv678575,nssv662054,nssv680618,nssv693263,nssv655562,nssv678400,nssv661610,nssv665781,nssv675607,nssv679235,nssv664711,nssv690511,nssv688384,nssv657399,nssv665454,nssv693151,nssv653084,nssv668107,nssv657595,nssv672510,nssv676911,nssv681928,nssv653373,nssv658951,nssv693339,nssv676533,nssv665044,nssv659506,nssv679981,nssv679924,nssv682381,nssv662716,nssv685584,nssv689811,nssv674610,nssv660491,nssv678479,nssv683750,nssv677066,nssv662700,nssv683544,nssv686109,nssv680351,nssv684974,nssv688309,nssv687032,nssv664509,nssv684167,nssv680214,nssv660161,nssv692065,nssv652562,nssv683784,nssv656167,nssv662564,nssv659053,nssv667384,nssv684080,nssv676696,nssv661474,nssv667126,nssv664184,nssv677964,nssv687054,nssv671920,nssv682828,nssv658023,nssv667625,nssv692786,nssv658743,nssv687913,nssv663363,nssv688453,nssv670272,nssv669535,nssv683998,nssv660939,nssv673224,nssv674818,nssv687072,nssv685604,nssv689463,nssv676015,nssv674388,nssv681601,nssv678032,nssv659132,nssv655791,nssv659276,nssv689860,nssv678076,nssv654630,nssv677171,nssv692406,nssv654360,nssv692453,nssv670029,nssv659876,nssv656216,nssv671324,nssv668833,nssv680154,nssv654450,nssv682064,nssv665100,nssv675772,nssv672288,nssv660977,nssv653958,nssv655476,nssv659967,nssv693723,nssv660185,nssv658287,nssv681310,nssv659596,nssv670758,nssv687989,nssv657639,nssv682086,nssv688842,nssv654762,nssv656404,nssv675527,nssv666370,nssv653622 M 2026 10 527 "" dgv79n17 3 192546445 192555930 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437353,nsv437354 M 60 0 2 "" NA19161,NA19194 nsv508266 3 192546914 192566339 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618732 S 4 0 1 "" NA10860 nsv10371 3 192546950 192554536 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12404,nssv29142,nssv29209,nssv29125,nssv11537,nssv29043,nssv11838,nssv11851,nssv12523,nssv11497,nssv12342,nssv28832,nssv12357,nssv29212,nssv13200,nssv11703,nssv28838,nssv12261,nssv29177,nssv12668,nssv13193,nssv29099,nssv11704,nssv28469,nssv28786,nssv29203,nssv11709,nssv11754,nssv11516 M 31 28 1 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10847,NA10863,NA11830,NA12155,NA12740,NA12802,NA12872,NA18502,NA18504,NA18517,NA18537,NA18552,NA18563,NA18564,NA18572,NA18853,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19144,NA19221,NA19240 dgv633n27 3 192548094 192549946 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv461057,nsv461058,nsv461120,nsv461119,nsv461059 M 1557 0 5 "" 1780854185_A,1780854517_A,1780862101_A,1780862206_A,1782681114_A nsv818199 3 192548094 192549946 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418544,nssv1418545 M 112 0 2 "" NA10830,NA12236 nsv461060 3 192548094 192550990 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537510 S 1557 0 1 "" NINDS_61 dgv634n27 3 192548094 192552686 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv461111,nsv461081,nsv461094,nsv461091,nsv461082,nsv461068,nsv461109,nsv461076,nsv461098,nsv461085,nsv461065,nsv461112,nsv461075,nsv461080,nsv461105,nsv461110,nsv461083,nsv461092,nsv461108,nsv461079,nsv461113,nsv461115,nsv461086,nsv461103,nsv461114,nsv461096,nsv461097,nsv461107,nsv461118,nsv461074,nsv461104,nsv461093,nsv461089,nsv461099,nsv461100,nsv461078,nsv461088,nsv461077,nsv461067,nsv461101,nsv461116,nsv461070,nsv461072,nsv461087,nsv461063,nsv461071,nsv461069,nsv461090,nsv461102,nsv461066,nsv461064 M 1557 0 51 "" 1780846322_A,1780854340_A,1780854354_A,1780862071_A,1780862123_A,1780862165_A,1780862334_A,1780862346_A,1780862579_A,1782681275_A,1782681294_A,1782681555_A,1787431166_A,1798860251_A,HGDP00031,HGDP00098,HGDP00124,HGDP00181,HGDP00183,HGDP00185,HGDP00461,HGDP00467,HGDP00512,HGDP00520,HGDP00563,HGDP00564,HGDP00597,HGDP00600,HGDP00676,HGDP00708,HGDP00729,HGDP00794,HGDP00865,HGDP00902,HGDP00927,HGDP00998,HGDP01010,HGDP01013,HGDP01015,HGDP01037,HGDP01043,HGDP01359,HGDP01374,HGDP01404,NINDS_129,NINDS_145,NINDS_189,NINDS_219,NINDS_228,NINDS_5,NINDS_63 nsv818201 3 192548094 192552686 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416783,nssv1416537,nssv1417979,nssv1415629,nssv1415943,nssv1416048,nssv1415627,nssv1416333,nssv1416660,nssv1416332,nssv1415628,nssv1416049,nssv1416684,nssv1415941,nssv1415639,nssv1418441,nssv1417980,nssv1415831,nssv1416331,nssv1418543,nssv1416673,nssv1416539,nssv1415832,nssv1418442,nssv1415942 M 112 0 25 "" NA06993,NA07348,NA07357,NA10835,NA10857,NA10860,NA11993,NA12043,NA12044,NA12154,NA12249,NA12740,NA12750,NA12751,NA12801,NA12813,NA18855,NA18856,NA18857,NA19141,NA19142,NA19172,NA19173,NA19193,NA19194 nsv818202 3 192548623 192552686 CNV Gain+Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417012,nssv1417011,nssv1416231,nssv1417013,nssv1416230 M 112 2 3 "" NA06994,NA07000,NA07029,NA10851,NA12056 nsv818203 3 192549580 192552686 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416716,nssv1416715 M 112 0 2 "" NA19159,NA19161 nsv437905 3 192549946 192552686 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv467922,nssv467920,nssv467921,nssv467923,nssv467924,nssv467925 M 269 0 5 Samples from several populations that are part of the HapMap project. "" NA19101,NA19159,NA19161,NA19193,NA19194 nsv818204 3 192550990 192552686 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418546 S 112 0 1 "" NA10830 nsv10373 3 192558727 192560887 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13223 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18972 nsv525219 3 192671834 192706366 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701305 S 2026 0 1 "" nsv509874 3 192725237 192731237 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623930 S 4 0 1 "" NA18994 dgv80n17 3 192831613 192853803 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437359,nsv436931,nsv437355,nsv437358,nsv437356 M 60 0 5 "" NA07048,NA18515,NA18860,NA18872,NA19139 nsv437360 3 192853803 192875599 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467241 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18854 nsv461121 3 192878674 192914198 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537569 S 1557 0 1 "" 1780854436_A nsv521640 3 192914934 192925259 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698258 S 2026 0 1 "" nsv461122 3 192982202 193224483 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537570 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00526 nsv521501 3 192995270 193050591 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694454 S 2026 0 1 "" nsv516379 3 193001175 193026629 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv667918,nssv663341,nssv678151 M 2026 0 3 "" nsv526670 3 193053365 193060350 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703001 S 2026 1 0 "" nsv517535 3 193127173 193158462 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv662771,nssv652939,nssv699797,nssv652290,nssv689542,nssv683897 M 2026 0 6 "" nsv238008 3 193271977 193272560 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv256586 M 24 "" nsv4170 3 193381334 193472682 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2441 S 9 0 1 "" NA18555 nsv508976 3 193409652 193409652 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620778 S 4 1 0 "" NA15510 nsv247 3 193414727 193431907 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv247 S 1 1 0 "" NA15510 nsv4171 3 193414727 193431907 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv11072 S 9 1 0 "" NA15510 dgv1545e1 3 193570453 193577446 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv17871,esv1107 M 271 0 0 "" NA10857 nsv829822 3 193661990 193832719 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443298 S 95 1 0 "" nsv4172 3 193688890 193722469 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7909 S 9 1 0 "" NA12156 nsv469781 3 193832604 193983255 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649802 M 265 0 11 Samples from several populations that are part of the HapMap project. "" nsv461124 3 193916760 194086031 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537571 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01033 esv33711 3 193958031 193965615 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98162,essv94802,essv97321,essv96734 M 51 0 4 "" 21772,21791,21879,22011 nsv437906 3 194082038 194092418 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv467926 S 269 0 1 Samples from several populations that are part of the HapMap project. "" NA19210 dgv308n21 3 194082038 194095623 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv519787,nsv515606 M 2026 0 7 "" nsv237523 3 194156022 194156089 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv256101 M 24 "" nsv10374 3 194242109 194268199 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28509 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA12802 esv33070 3 194260221 194265266 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98688,essv101028,essv98336,essv94425,essv95422,essv95353,essv94549,essv98371 M 51 0 8 "" 21606,21693,21772,21808,21847,21872,21932,22352 dgv1546e1 3 194279079 194450436 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv17495,esv81 M 271 0 0 "" NA12762 nsv4173 3 194318281 194353677 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3221 S 9 1 0 "" NA12878 nsv508267 3 194339064 194370588 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622476,nssv617484,nssv619930,nssv618733 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv4174 3 194344630 194377582 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4707,nssv359,nssv11073,nssv7056,nssv3222 M 9 0 5 "" NA12156,NA12878,NA15510,NA19129,NA19240 nsv248 3 194349096 194374716 CNV Loss Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv248 S 1 0 1 "" NA15510 nsv10375 3 194357665 194368253 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11881,nssv28579,nssv12372,nssv29185,nssv11734,nssv12089,nssv12387,nssv12553,nssv13230,nssv12464,nssv29155,nssv11739 M 31 11 0 Samples from several populations that are part of the HapMap project. "" NA10839,NA12740,NA12802,NA18502,NA18504,NA18517,NA19132,NA19144,NA19173,NA19221,NA19240 esv32766 3 194358045 194368335 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101507,essv98803,essv101255,essv93920,essv100793,essv96849,essv100916,essv95117,essv98241,essv97051,essv95662,essv95459,essv95326,essv95873,essv94571,essv99079,essv92873,essv96189,essv99961,essv95969,essv93351,essv99708,essv94969,essv92524,essv98018,essv99250,essv100211,essv100538,essv100448,essv99419,essv96259 M 51 30 1 "" 21603,21606,21618,21634,21656,21659,21693,21721,21772,21817,21841,21847,21872,21911,21932,21938,21939,22007,22086,22127,22170,22217,22231,22233,22259,22275,22286,22298,22300,22335,22371 nsv437907 3 194358075 194366875 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv467960,nssv468031,nssv467998,nssv468026,nssv467999,nssv468076,nssv467982,nssv468056,nssv468087,nssv467948,nssv468068,nssv468073,nssv468080,nssv468034,nssv467996,nssv468014,nssv467988,nssv468003,nssv467974,nssv468082,nssv468001,nssv468062,nssv467994,nssv468050,nssv467991,nssv467966,nssv468018,nssv467957,nssv467962,nssv467989,nssv468079,nssv468039,nssv467945,nssv468020,nssv467932,nssv468009,nssv467976,nssv468004,nssv467983,nssv468045,nssv467934,nssv467977,nssv467970,nssv468036,nssv468054,nssv468000,nssv467956,nssv467943,nssv468010,nssv468035,nssv467951,nssv468078,nssv468028,nssv467939,nssv468077,nssv468002,nssv467961,nssv467944,nssv467973,nssv468070,nssv467927,nssv467946,nssv467937,nssv468053,nssv468060,nssv468038,nssv468033,nssv468011,nssv468055,nssv468071,nssv468072,nssv468012,nssv467978,nssv468046,nssv467953,nssv467959,nssv468066,nssv468084,nssv467992,nssv468029,nssv468047,nssv468057,nssv467950,nssv468040,nssv467993,nssv468065,nssv467936,nssv467968,nssv468032,nssv468016,nssv468061,nssv468013,nssv468007,nssv468088,nssv468023,nssv467949,nssv468027,nssv468089,nssv467967,nssv467940,nssv468042,nssv467938,nssv468044,nssv468015,nssv468069,nssv467947,nssv468058,nssv467980,nssv468059,nssv468064,nssv467942,nssv468025,nssv468048,nssv467931,nssv467969,nssv467933,nssv467958,nssv468021,nssv468043,nssv467954,nssv467935,nssv467981,nssv468024,nssv467995,nssv467971,nssv467984,nssv467990,nssv468037,nssv467928,nssv468049,nssv468067,nssv468085,nssv468081,nssv468051,nssv467955,nssv467965,nssv468006,nssv467972,nssv468017,nssv468083,nssv467985,nssv467929,nssv468005,nssv467979,nssv467987,nssv468022 M 269 0 141 Samples from several populations that are part of the HapMap project. "" NA06994,NA07000,NA07019,NA07022,NA07029,NA07034,NA07048,NA07357,NA10835,NA10838,NA10846,NA10847,NA10851,NA10855,NA10857,NA10863,NA11830,NA11831,NA11832,NA11993,NA12004,NA12005,NA12043,NA12056,NA12144,NA12146,NA12155,NA12234,NA12239,NA12248,NA12264,NA12707,NA12716,NA12717,NA12750,NA12752,NA12760,NA12763,NA12801,NA12812,NA12813,NA12864,NA12865,NA12872,NA12875,NA12891,NA18521,NA18522,NA18526,NA18537,NA18540,NA18542,NA18545,NA18550,NA18552,NA18558,NA18562,NA18563,NA18564,NA18570,NA18571,NA18577,NA18579,NA18582,NA18592,NA18593,NA18594,NA18603,NA18608,NA18609,NA18611,NA18612,NA18620,NA18622,NA18623,NA18624,NA18632,NA18633,NA18635,NA18636,NA18637,NA18852,NA18853,NA18854,NA18857,NA18858,NA18859,NA18860,NA18940,NA18942,NA18943,NA18944,NA18945,NA18947,NA18948,NA18951,NA18952,NA18953,NA18959,NA18961,NA18964,NA18965,NA18966,NA18967,NA18969,NA18970,NA18971,NA18972,NA18973,NA18974,NA18975,NA18976,NA18978,NA18980,NA18981,NA18987,NA18990,NA18991,NA18992,NA18994,NA18997,NA18998,NA19000,NA19005,NA19007,NA19100,NA19102,NA19120,NA19128,NA19131,NA19132,NA19137,NA19138,NA19139,NA19140,NA19142,NA19143,NA19145,NA19204,NA19211,NA19238 nsv442888 3 194360664 194365605 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv249 3 194606361 194645406 CNV Loss Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv249 S 1 0 1 "" NA15510 nsv4175 3 194606361 194645406 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv11075,nssv4708 M 9 0 2 "" NA15510,NA19129 nsv526405 3 194612509 194621407 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702705 S 2026 0 1 "" nsv437908 3 194619178 194621407 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv468090,nssv468093,nssv468091,nssv468094,nssv468095,nssv468092 M 269 0 6 Samples from several populations that are part of the HapMap project. "" NA18637,NA18944,NA18945,NA18987,NA18992,NA19000 dgv309n21 3 194619178 194635110 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv516400,nsv527401 M 2026 0 30 "" dgv1547e1 3 194716602 194886348 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv24272,esv271 M 271 0 0 "" NA10856 nsv10376 3 194881986 194885853 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11799,nssv12291,nssv13260 M 31 0 3 Samples from several populations that are part of the HapMap project. "" NA12740,NA18860,NA19221 nsv523249 3 195020261 195042638 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698978 S 2026 1 0 "" nsv528224 3 195061472 195061663 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704785 S 2026 0 1 "" nsv829823 3 195414678 195511923 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443299 S 95 0 1 "" nsv4177 3 195464072 195497968 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7910 S 9 1 0 "" NA12156 nsv4178 3 195566223 195598337 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10385 S 9 1 0 "" NA18956 nsv236292 3 195602470 195603226 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv254870 M 24 "" nsv516867 3 195658619 195694829 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv690646,nssv689131,nssv676613,nssv655187,nssv703033,nssv684870,nssv672710,nssv701031,nssv654543 M 2026 1 8 "" nsv237958 3 195729005 195729005 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv256536 M 24 "" nsv509875 3 195729235 195735235 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621222,nssv623931,nssv622042 M 4 0 3 "" NA10860,NA15510,NA18994 nsv528574 3 195734790 195736905 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705193 S 2026 0 1 "" dgv310n21 3 195815494 195835811 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv520433,nsv517166 M 2026 0 9 "" nsv508268 3 195820433 195884010 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619931 S 4 0 1 "" NA15510 nsv519476 3 195847304 196174526 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696873 S 2026 1 0 "" nsv237578 3 195865383 195865774 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv256156 M 24 "" nsv526568 3 195870688 196020418 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702884 S 2026 1 0 "" nsv4179 3 195905132 195937419 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4709 S 9 1 0 "" NA19129 nsv4180 3 195942547 195987222 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7911 S 9 0 1 "" NA12156 nsv469698 3 195974130 196139839 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649630 M 265 0 3 Samples from several populations that are part of the HapMap project. "" nsv525297 3 196013739 196014767 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701403 S 2026 0 1 "" nsv237106 3 196024588 196027553 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255684 M 24 "" nsv10377 3 196036106 196038903 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13253 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18972 nsv10378 3 196041317 196050986 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13290,nssv12321 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18860,NA19221 nsv518682 3 196192344 196194662 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696131 S 2026 0 1 "" nsv528661 3 196192344 196204909 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705295 S 2026 0 1 "" nsv525763 3 196194662 196200535 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701931 S 2026 0 1 "" nsv237463 3 196225358 196225608 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv256041 M 24 "" esv33213 3 196267467 196270312 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98159,essv101316,essv95428,essv93709,essv98085 M 51 0 5 "" 21772,21805,21847,21972,22259 nsv461126 3 196298781 196443185 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537572 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00525 nsv526569 3 196519584 196604792 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702885 S 2026 1 0 "" dgv1548e1 3 196584084 196969332 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv12057,essv1065,essv24202,essv18053,essv2376,essv22739,essv18871,essv19842,essv5987,essv5850,essv7436,essv21930,essv15903,essv1316,essv22615,essv9843,essv5068,essv25142,essv19040,essv20443,essv5888,essv20846,essv7478,essv6497,essv6797,essv25174,essv24092,essv19329,essv14234,essv7496,essv20822,essv23646,essv18570,essv5636,essv6103,essv19113,essv18915 M 271 0 0 "" NA06993,NA06994,NA07029,NA07034,NA07048,NA07055,NA10851,NA10855,NA11829,NA11839,NA11840,NA12044,NA12057,NA12144,NA12154,NA12234,NA12239,NA12717,NA12872,NA18552,NA18555,NA18561,NA18570,NA18573,NA18576,NA18579,NA18582,NA18594,NA18633,NA18636,NA18913,NA18973,NA18990,NA18995,NA19144,NA19205,NA19238 dgv1549e1 3 196584084 197559903 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv759,essv21975 M 271 0 0 "" NA11995 nsv829824 3 196612364 196767995 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443300 S 95 0 1 "" nsv508977 3 196627325 196722237 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620779,nssv623401 M 4 2 0 "" NA15510,NA18994 nsv10379 3 196648236 196651887 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28862 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA10847 nsv4181 3 196653287 196698220 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7912 S 9 0 1 "" NA12156 nsv10380 3 196677636 196716423 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13283,nssv28816,nssv11546,nssv13320,nssv29239,nssv29233,nssv29207,nssv12417,nssv29172,nssv28619,nssv11567,nssv11814,nssv28868,nssv11868,nssv12402 M 31 10 5 Samples from several populations that are part of the HapMap project. "" NA12802,NA12872,NA18502,NA18537,NA18552,NA18563,NA18564,NA18572,NA18853,NA18942,NA18972,NA18975,NA19007,NA19132,NA19221 nsv236472 3 196699675 196704492 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255050 M 24 "" nsv236347 3 196701418 196702924 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv254925 M 24 "" nsv236461 3 196705509 196709508 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255039 M 24 "" nsv236277 3 196710383 196710458 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv254855 M 24 "" dgv1550e1 3 196743569 196969332 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv10180,essv3580,essv19735,essv21570,essv15978,essv20974,essv24956,essv20485,essv6507,essv4996,essv6552,essv9960,essv5651,essv8256,essv5620,essv14011,essv6461,essv12126,essv8512,essv8894,essv4210,essv94,essv5949,essv960,essv17866,essv4538 M 271 0 0 "" NA10857,NA10859,NA10863,NA12146,NA12249,NA12707,NA18516,NA18526,NA18566,NA18571,NA18572,NA18577,NA18593,NA18609,NA18624,NA18637,NA18854,NA18981,NA18987,NA19005,NA19142,NA19153,NA19171,NA19173,NA19204,NA19222 nsv517517 3 196760416 197005566 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv674204,nssv660186,nssv668956,nssv652251,nssv655368,nssv702889 M 2026 0 6 "" nsv10381 3 196766868 196968047 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28892,nssv28898,nssv12613,nssv11733,nssv12583,nssv29202,nssv12149,nssv11576,nssv11793,nssv28659,nssv12494,nssv13313,nssv12462,nssv11480,nssv11597,nssv11482,nssv11829,nssv11898,nssv11844,nssv12698,nssv12477,nssv29242,nssv11824,nssv13380,nssv13410,nssv29237,nssv29215,nssv29129,nssv11794,nssv11527,nssv29245,nssv11476,nssv13350,nssv28846 M 31 3 24 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10847,NA11830,NA12155,NA12740,NA12802,NA12872,NA18502,NA18504,NA18517,NA18537,NA18552,NA18563,NA18564,NA18572,NA18853,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19144,NA19173,NA19221 essv12347 3 196868577 197042673 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19138 dgv1551e1 3 196868577 197108192 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv84,essv3820,essv22060,essv8864,essv24144,essv4362,essv10452,essv2483,essv7332,essv11001,essv11968,essv5553,essv8484,essv3171,essv13638,essv19631,essv3396,essv23199,essv3540,essv16161,essv3450,essv7071,essv12462,essv9417,essv15230,essv20330,essv19097,essv794,essv12844,essv14858,essv13748,essv16471,essv5163,essv18424,essv9631,essv15067,essv15569,essv11503,essv15303,essv17052,essv2525,essv10591,essv4071,essv14458,essv6232,essv4985,essv21773,essv13089,essv17657,essv24524,essv23077,essv8946,essv13930,essv4831,essv8331,essv19792,essv20930,essv10366,essv9106,essv16641,essv23873,essv18098,essv9758,essv21134,essv7039,essv23529,essv18273,essv1415,essv3691,essv20638,essv23142,essv440,essv18957,essv3895,essv5487,essv6839,essv2202,essv3730,essv1101,essv17427,essv2256,essv11846,essv20133,essv10279,essv6311 M 271 0 0 "" NA06993,NA07055,NA07345,NA10835,NA10846,NA10847,NA11881,NA11993,NA12005,NA12043,NA12154,NA12155,NA12156,NA12236,NA12239,NA12249,NA12801,NA12802,NA12812,NA12814,NA12815,NA12891,NA12892,NA18506,NA18508,NA18515,NA18516,NA18517,NA18522,NA18529,NA18537,NA18540,NA18564,NA18570,NA18573,NA18579,NA18609,NA18612,NA18632,NA18635,NA18636,NA18637,NA18852,NA18854,NA18858,NA18860,NA18862,NA18863,NA18943,NA18944,NA18945,NA18947,NA18952,NA18956,NA18960,NA18961,NA18964,NA18965,NA18966,NA18991,NA18992,NA18994,NA18999,NA19003,NA19012,NA19094,NA19100,NA19120,NA19127,NA19129,NA19137,NA19139,NA19141,NA19142,NA19143,NA19153,NA19172,NA19173,NA19200,NA19201,NA19207,NA19208,NA19221,NA19222,NA19240 dgv1552e1 3 196868577 197162583 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv21077,essv3117,essv20209 M 271 0 0 "" NA06991,NA11832,NA18969 dgv1553e1 3 196868577 197317736 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv23837,essv699,essv12533,essv22438,essv1500,essv18061,essv22974,essv9170,essv4787,essv11799,essv20372,essv7380,essv17511,essv4687,essv14603,essv13550,essv14741,essv17633,essv12189,essv6675,essv3059,essv8300,essv8226,essv13678,essv8108,essv4500,essv7853,essv7741,essv15726,essv10650,essv23464,essv21682,essv14184,essv9947,essv10082,essv24876,essv13447,essv18833,essv22599,essv22411,essv17757,essv9103,essv20029,essv16353,essv23823,essv23372,essv14530,essv19207,essv9329,essv19897,essv17292,essv11442,essv25025,essv14328,essv1969,essv10139,essv21412,essv18346,essv10813,essv6635,essv15614,essv16244,essv21268,essv18762,essv19167,essv2025,essv22366,essv22830,essv16950,essv22773,essv21337,essv7303,essv17912,essv3238,essv24743,essv16748,essv8643,essv12666,essv23619,essv11902,essv20625,essv15896,essv16015,essv13157,essv17278,essv11766,essv138,essv23400,essv15537,essv22222,essv24472 M 271 0 0 "" NA07000,NA07019,NA07022,NA07034,NA07048,NA07056,NA07348,NA07357,NA10830,NA10831,NA10838,NA10839,NA10854,NA10855,NA10860,NA10861,NA11994,NA12003,NA12004,NA12006,NA12044,NA12056,NA12145,NA12248,NA12740,NA12750,NA12751,NA12753,NA12761,NA12762,NA12763,NA12813,NA12865,NA12874,NA12875,NA12878,NA18500,NA18501,NA18502,NA18503,NA18504,NA18505,NA18521,NA18542,NA18552,NA18558,NA18592,NA18608,NA18620,NA18621,NA18622,NA18623,NA18853,NA18855,NA18856,NA18857,NA18871,NA18872,NA18912,NA18949,NA18959,NA18968,NA18974,NA18975,NA18980,NA18981,NA19093,NA19098,NA19099,NA19101,NA19102,NA19103,NA19116,NA19119,NA19128,NA19130,NA19131,NA19132,NA19140,NA19144,NA19145,NA19159,NA19160,NA19161,NA19192,NA19193,NA19194,NA19202,NA19206,NA19223,NA19239 nsv7358 3 196872832 198879882 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4712,nssv11077,nssv9637,nssv360,nssv10386,nssv11076,nssv361,nssv7057,nssv4711,nssv4710 M 9 0 0 "" NA12156,NA15510,NA18507,NA18956,NA19129,NA19240 dgv1554e1 3 196894481 196969332 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv3328,essv13313,essv21874,essv10718,essv12014,essv7954,essv16188,essv4352,essv2405,essv2133,essv22702,essv7985,essv17351,essv11609,essv1668,essv10607,essv2927,essv20510,essv186,essv5845,essv625,essv21485,essv3498,essv5436,essv4097,essv23315,essv10965,essv13986,essv4925,essv18484,essv15953,essv7631,essv6423,essv5877,essv6209,essv12909,essv5706,essv13941,essv6537,essv13248,essv2961,essv1579,essv22283,essv17416,essv18804,essv9281,essv22266,essv11075,essv5773,essv17991,essv2767,essv19705,essv9479,essv13255,essv14955,essv11379,essv25117,essv6932,essv6056,essv754,essv1809,essv23112,essv8051,essv12440,essv7242,essv25046,essv19346,essv9293,essv19880,essv24331,essv19142,essv17402,essv14246,essv11362,essv13111,essv7661,essv14025,essv18474,essv11303,essv24359,essv24551,essv19795,essv14823,essv24622,essv21610,essv24028,essv13496,essv713,essv15165,essv16382,essv1989,essv3680,essv2717,essv599,essv25068,essv8976,essv514,essv5667,essv3837,essv14907,essv3909,essv3635,essv1657,essv2419,essv9548,essv999,essv7921,essv3924,essv2744,essv3248,essv3605,essv12869 M 271 0 0 "" NA06985,NA06991,NA10830,NA10839,NA10846,NA10856,NA11831,NA11832,NA11881,NA11882,NA11992,NA12004,NA12005,NA12043,NA12155,NA12156,NA12236,NA12248,NA12264,NA12716,NA12760,NA12762,NA12801,NA12812,NA12864,NA12873,NA12892,NA18502,NA18506,NA18507,NA18508,NA18515,NA18517,NA18522,NA18524,NA18529,NA18537,NA18540,NA18542,NA18545,NA18547,NA18550,NA18562,NA18563,NA18603,NA18605,NA18608,NA18611,NA18622,NA18632,NA18635,NA18852,NA18855,NA18858,NA18859,NA18861,NA18862,NA18863,NA18870,NA18914,NA18940,NA18942,NA18943,NA18944,NA18947,NA18948,NA18951,NA18952,NA18953,NA18960,NA18961,NA18964,NA18965,NA18966,NA18967,NA18969,NA18970,NA18971,NA18972,NA18976,NA18978,NA18992,NA18994,NA18997,NA18998,NA18999,NA19000,NA19003,NA19007,NA19092,NA19098,NA19100,NA19103,NA19127,NA19129,NA19131,NA19132,NA19137,NA19138,NA19139,NA19141,NA19152,NA19154,NA19160,NA19172,NA19201,NA19203,NA19207,NA19209,NA19210,NA19211,NA19240 nsv469606 3 196906757 197042668 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649722 M 265 27 12 Samples from several populations that are part of the HapMap project. "" nsv471621 3 196906758 197283784 CNV Gain+Loss Sharp et al 2005 15918152 BAC_aCGH,FISH Eichler Segmental Duplication BAC array nssv548782,nssv549518,nssv549519,nssv548775,nssv548778,nssv549524,nssv549521,nssv549515,nssv549516,nssv549520,nssv548773,nssv549517,nssv549523,nssv548774,nssv548772,nssv548785,nssv549525,nssv548781,nssv548777,nssv548783,nssv548784,nssv548776,nssv548779,nssv548780,nssv549522,nssv548786 M 48 9 9 "" JK1051,NA10469,NA10495,NA10970,NA10971,NA10976,NA10979,NA11523,NA15726,NA15727,NA15728,NA15729,NA15731,NA15733,NA16689,NA17015,NA17058,P86GA esv32809 3 196908291 196967415 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101436,essv98726,essv101134,essv100691,essv101047,essv95212,essv95058,essv98319,essv94721,essv94078,essv95577,essv95621,essv95665,essv95430,essv95505,essv95508,essv93127,essv95310,essv95254,essv97308,essv101784,essv95905,essv92879,essv93722,essv96658,essv97235,essv93330,essv94846,essv96498,essv99172,essv97764,essv100128,essv100531,essv100373,essv94226 M 51 11 20 "" 21603,21606,21618,21656,21693,21721,21772,21791,21802,21841,21847,21863,21872,21879,21909,21911,21939,21972,22011,22075,22170,22231,22261,22275,22278,22286,22298,22300,22394 nsv829825 3 196908457 197078007 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443304,nssv1443303,nssv1443302,nssv1443305,nssv1443301 M 95 0 5 "" nsv436932 3 196915086 196946473 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv466813 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA12865 nsv237215 3 196915260 196915341 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255793 M 24 "" nsv250 3 196922245 198866401 OTHER Inversion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv250 S 1 0 0 "" NA15510 dgv1555e1 3 196922636 196969332 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1055,essv2563,essv16589,essv8535,essv9503,essv3666,essv7995,essv4522,essv7,essv6068,essv25095,essv18541,essv18781 M 271 0 0 "" NA11993,NA12814,NA12891,NA18521,NA18523,NA18621,NA18623,NA18860,NA18945,NA18974,NA18975,NA18991,NA19221 esv2751988 3 196922636 197139659 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6988584,essv6982791,essv6986260 M 771 1 0 "" BEC_593 nsv509876 3 196925291 196931291 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622043 S 4 0 1 "" NA10860 nsv237071 3 196930289 196930346 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255649 M 24 "" nsv237496 3 196930585 196930888 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv256074 M 24 "" nsv471428 3 196940682 196954124 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548252,nssv548251,nssv548253 M 3 "" nsv237976 3 196941576 196942088 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv256554 M 24 "" nsv236267 3 196941796 196942251 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv254845 M 24 "" nsv237230 3 196954581 196963341 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255808 M 24 "" nsv508978 3 196965992 197061195 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619351 S 4 1 0 "" NA10860 nsv4182 3 196982676 197010849 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2442,nssv7058,nssv3224 M 9 3 0 "" NA12156,NA12878,NA18555 nsv10382 3 196988208 197004920 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11510,nssv11823,nssv28699,nssv11557,nssv29232,nssv29073,nssv11911,nssv12507,nssv11512,nssv11627,nssv29159,nssv28952,nssv28958,nssv12524,nssv11928,nssv12351,nssv11485,nssv12179,nssv13343,nssv12643,nssv11488,nssv11518,nssv11854,nssv12728,nssv11606,nssv28876,nssv11874,nssv11859,nssv13470 M 31 26 3 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10847,NA10863,NA11830,NA12155,NA12740,NA12802,NA12872,NA18504,NA18517,NA18537,NA18563,NA18564,NA18572,NA18853,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19144,NA19173,NA19221,NA19240 dgv1556e1 3 197009930 197317736 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv11275,essv9656,essv16857 M 271 0 0 "" NA18913,NA19204,NA19205 nsv829827 3 197097176 197249139 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443311,nssv1443310,nssv1443306,nssv1443308,nssv1443309 M 95 1 4 "" nsv469518 3 197112032 197283784 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649714 M 265 10 27 Samples from several populations that are part of the HapMap project. "" nsv10385 3 197139274 197228116 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11919,nssv11889,nssv11548 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA12740,NA19144 nsv236514 3 197215230 197215564 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255092 M 24 "" nsv525942 3 197226716 198515237 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702148 S 2026 1 0 "" nsv524410 3 197264550 197304505 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700332 S 2026 1 0 "" nsv10386 3 197267046 197268577 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28982,nssv11540,nssv12209 M 31 0 3 Samples from several populations that are part of the HapMap project. "" NA10847,NA18853,NA19173 nsv509877 3 197388242 197394242 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622044 S 4 0 1 "" NA10860 esv32936 3 197404355 197429137 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98796 S 51 1 0 "" 21606 nsv10387 3 197437333 197440482 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv29012 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA10847 nsv521280 3 197437851 197443782 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697883 S 2026 0 1 "" nsv518925 3 197490377 197493754 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696386 S 2026 0 1 "" nsv4183 3 197522377 197567419 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7913 S 9 0 1 "" NA12156 nsv509878 3 197541702 197547702 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622045,nssv623932 M 4 0 2 "" NA10860,NA18994 nsv469831 3 197559913 197723535 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649852 M 265 0 0 Samples from several populations that are part of the HapMap project. "" esv32642 3 197607129 197642171 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100101 S 51 0 1 "" 22086 nsv527402 3 197656411 197675918 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703838 S 2026 0 1 "" nsv10388 3 197676455 197678965 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12554,nssv11578 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18517,NA19144 nsv236910 3 197676662 197676662 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255488 M 24 "" nsv10389 3 197690629 197695101 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11475,nssv11904 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18537,NA18975 nsv829828 3 197756431 197951951 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443313,nssv1443312,nssv1443314 M 95 0 3 "" nsv237010 3 197840987 197841046 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255588 M 24 "" nsv237691 3 197878412 197878464 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv256269 M 24 "" nsv10390 3 197905463 197908159 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12788 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA12155 nsv524832 3 197942329 197950811 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700833 S 2026 0 1 "" nsv829829 3 197963039 198102241 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443316,nssv1443317,nssv1443315 M 95 0 3 "" nsv510945 3 198012959 198028765 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618643 S 4 0 0 "" CHM nsv4184 3 198019180 198042542 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4713,nssv9877 M 9 2 0 "" NA18507,NA19129 nsv508979 3 198026163 198028765 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619352,nssv623402 M 4 2 0 "" NA10860,NA18994 nsv10391 3 198043278 198048717 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11587,nssv11941,nssv12537,nssv11542 M 31 2 2 Samples from several populations that are part of the HapMap project. "" NA11830,NA18942,NA19132,NA19240 nsv4185 3 198185661 198216036 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10387 S 9 1 0 "" NA18956 nsv517987 3 198205623 198239151 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695399 S 2026 0 1 "" nsv10392 3 198247165 198250452 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11515 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18980 nsv237775 3 198248470 198249725 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv256353 M 24 "" nsv461132 3 198282168 198398392 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537573 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00529 nsv516873 3 198282168 198515237 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv663029,nssv654612,nssv695205,nssv701204 M 2026 2 2 "" nsv461133 3 198321960 198473906 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537574 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00533 dgv1557e1 3 198343363 198532077 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv24061,essv1490,essv13920,essv3050,essv2785,essv24710,essv6127,essv21782,essv10100,essv18291,essv22970,essv18397,essv19011,essv18068,essv12232,essv8938,essv19276,essv22521,essv23080,essv14550,essv254,essv24836,essv4723,essv16242,essv21192,essv15700,essv9679,essv12715,essv17959,essv22831,essv23147,essv24132,essv13531,essv15873,essv2206 M 271 0 0 "" NA07000,NA07357,NA10838,NA10846,NA10847,NA10859,NA11829,NA11830,NA11882,NA12003,NA12004,NA12005,NA12145,NA12239,NA12249,NA12812,NA12891,NA18532,NA18620,NA18854,NA18912,NA18913,NA18914,NA18948,NA18960,NA18980,NA18981,NA18987,NA19101,NA19130,NA19160,NA19161,NA19200,NA19202,NA19223 dgv1558e1 3 198343363 198986178 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv564,essv10312 M 271 0 0 "" NA18506 nsv829830 3 198376189 198569204 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443319 S 95 1 0 "" dgv635n27 3 198398392 198832486 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv461134,nsv461135 M 1557 2 0 "" HGDP00572,HGDP00574 nsv10393 3 198421397 198430857 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12492,nssv12673,nssv29103,nssv12381,nssv12818,nssv11617,nssv12567,nssv28906,nssv28739,nssv11958,nssv11971,nssv11545,nssv11572,nssv12584,nssv11506,nssv11934,nssv11657,nssv12239,nssv13500,nssv11608,nssv11505,nssv29189,nssv29042,nssv11636,nssv11570 M 31 25 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA10847,NA10863,NA11830,NA12155,NA12802,NA18502,NA18504,NA18517,NA18537,NA18552,NA18563,NA18564,NA18572,NA18853,NA18860,NA18942,NA18975,NA18980,NA19007,NA19132,NA19144,NA19173,NA19221,NA19240 nsv4186 3 198421463 198457875 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3225 S 9 0 1 "" NA12878 nsv818205 3 198506435 198515237 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417323 S 112 1 0 "" NA18608 nsv461136 3 198523295 198822839 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537577 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00966 nsv523679 3 198541283 198543268 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699483 S 2026 0 1 "" nsv508981 3 198545827 198642667 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619353,nssv623403,nssv620780 M 4 3 0 "" NA10860,NA15510,NA18994 nsv10394 3 198572010 198576963 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11600 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18853 nsv10396 3 198587852 198592261 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13530 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19221 nsv237927 3 198606199 198607430 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv256505 M 24 "" nsv10397 3 198650630 198654218 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13560,nssv11575,nssv12703 M 31 2 1 Samples from several populations that are part of the HapMap project. "" NA18504,NA18980,NA19221 nsv4189 3 198653674 198687279 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3226,nssv10388,nssv7061,nssv2443 M 9 4 0 "" NA12156,NA12878,NA18555,NA18956 nsv508982 3 198661354 198813228 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619354 S 4 1 0 "" NA10860 dgv1559e1 3 198664129 198823591 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv8792,essv11831,essv13934 M 271 0 0 "" NA18508,NA18521,NA18854 dgv1560e1 3 198664129 198986178 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv10078,essv16020,essv16998,essv4767,essv14642,essv9905,essv12686,essv11770 M 271 0 0 "" NA18500,NA18501,NA18504,NA18620,NA19093,NA19099,NA19144,NA19145 nsv10398 3 198674161 198676638 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv29072,nssv11853,nssv13373,nssv11638,nssv12614,nssv12411,nssv28988,nssv12001,nssv12848,nssv28777,nssv12597,nssv12733,nssv11884,nssv11602,nssv11949,nssv12269,nssv11647 M 31 4 13 Samples from several populations that are part of the HapMap project. "" NA07048,NA10839,NA10847,NA11830,NA12155,NA12740,NA12802,NA12872,NA18504,NA18517,NA18860,NA18942,NA18972,NA19132,NA19144,NA19173,NA19240 nsv10399 3 198732264 198734894 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11964 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18975 essv11975 3 198772060 198823587 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18517 dgv1561e1 3 198772060 198986178 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2047,essv22581,essv69,essv13134,essv13728,essv10152,essv23427,essv21262,essv6670,essv8141,essv15818,essv20087,essv23776,essv9241,essv24886,essv23378,essv19254,essv18850,essv16340,essv19911,essv14336,essv17807,essv18353,essv10833,essv23463,essv19185,essv16251,essv22769,essv17889,essv18775,essv17638,essv21379,essv1516,essv22356,essv14695,essv25014,essv1960,essv8604,essv17254,essv15456 M 271 0 0 "" NA07000,NA07019,NA07034,NA07048,NA07348,NA10831,NA10838,NA10839,NA10854,NA10855,NA11994,NA12003,NA12740,NA12750,NA12751,NA12753,NA12763,NA12813,NA12865,NA12874,NA12875,NA18503,NA18505,NA18608,NA18871,NA18949,NA18959,NA18980,NA18991,NA19102,NA19119,NA19128,NA19130,NA19159,NA19161,NA19193,NA19194,NA19206,NA19223,NA19239 nsv507146 3 198776596 198782596 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617623 S 4 1 0 "" CHM essv9861 3 198778468 198808132 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19144 nsv10400 3 198795447 198803327 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11668 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19144 essv14682 3 198796035 198808132 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19145 nsv441854 3 198796599 198802446 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv517776 3 198798938 198802758 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv667153,nssv682497,nssv670251,nssv692349,nssv681200,nssv653212,nssv685563,nssv663402,nssv689585,nssv667069,nssv659204,nssv657167,nssv687299,nssv677096 M 2026 0 14 "" nsv829831 3 198814967 198985634 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443321,nssv1443320,nssv1443322,nssv1443323 M 95 0 4 "" nsv10401 3 198822427 198882858 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11979,nssv11536,nssv12627,nssv12644,nssv12793,nssv11535,nssv12657 M 31 0 6 Samples from several populations that are part of the HapMap project. "" NA12740,NA18504,NA18517,NA18537,NA18552,NA19132 nsv508983 3 198839063 198952519 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623404,nssv619355 M 4 2 0 "" NA10860,NA18994 esv33779 3 198862194 198875568 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv96648,essv99896 M 51 1 1 "" 22011,22086 nsv236569 3 198943369 198943369 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv255147 M 24 "" nsv829832 3 198951368 199135545 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443324 S 95 0 1 "" nsv10402 3 198956684 198959290 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13403 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18972 esv2751989 3 198963750 199322068 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6988911,essv6985254,essv6985253,essv6987193 M 771 1 0 "" SPC_13 nsv519682 3 199039721 199049321 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696990 S 2026 0 1 "" nsv527527 3 199057869 199302285 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703984 S 2026 1 0 "" nsv238027 3 199149382 199152650 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv256605 M 24 "" esv33797 3 199199607 199383508 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101169,essv101220,essv93928,essv100849,essv96799,essv96815,essv95091,essv95222,essv94746,essv94056,essv101295,essv97944,essv95739,essv95486,essv95493,essv95563,essv93116,essv95262,essv97348,essv101637,essv95886,essv94582,essv92987,essv92787,essv92808,essv96147,essv96619,essv97255,essv98546,essv99901,essv96053,essv93440,essv93228,essv94924,essv92506,essv92582,essv99344,essv97750,essv100558 M 51 30 7 "" 21618,21634,21656,21659,21721,21791,21802,21805,21837,21841,21847,21863,21872,21879,21909,21911,21932,21939,21944,22007,22011,22075,22085,22086,22127,22128,22170,22231,22233,22275,22278,22298 nsv10403 3 199218354 199223558 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12687,nssv29102,nssv11630,nssv11666,nssv12522,nssv11883,nssv13590,nssv11605,nssv11914,nssv13463 M 31 2 8 Samples from several populations that are part of the HapMap project. "" NA07048,NA10839,NA10847,NA18502,NA18853,NA18972,NA18980,NA19007,NA19132,NA19221 nsv10404 3 199220440 199231498 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11913 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA07048 dgv1562e1 3 199260725 199450740 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv10079,essv16122,essv12265,essv12786,essv22985,essv11641,essv14311,essv14503,essv9219,essv10904,esv192,essv9394,essv10655,essv23937,essv8120,essv10758,essv15859,essv11172,essv15500 M 271 0 0 "" NA07357,NA12814,NA18505,NA18523,NA18853,NA18855,NA19099,NA19100,NA19101,NA19120,NA19128,NA19154,NA19194,NA19202,NA19206,NA19209,NA19211,NA19223 nsv508269 3 199301747 199347335 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622477,nssv617485 M 4 0 2 "" CHM,NA18994 nsv508984 3 199301747 199347335 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620781 S 4 1 0 "" NA15510 nsv433421 3 199307397 199314139 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463302 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA18507 nsv4190 3 199311929 199331934 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2444 S 9 0 1 "" NA18555 nsv10405 3 199313515 199321949 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12471,nssv11994,nssv29018,nssv29133,nssv11687,nssv12299,nssv11943,nssv11698,nssv12674,nssv12009,nssv29219,nssv12031,nssv11635,nssv11988,nssv13493,nssv29132,nssv11660,nssv12878,nssv11632,nssv12823,nssv11944,nssv11566,nssv11696,nssv12717,nssv12552 M 31 16 9 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10847,NA10863,NA12155,NA12740,NA12872,NA18502,NA18504,NA18517,NA18552,NA18563,NA18564,NA18853,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19144,NA19173,NA19240 nsv251 3 199315590 199328919 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv251 S 1 1 0 "" NA15510 nsv4191 3 199315590 199328919 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4715,nssv11078,nssv9388,nssv362 M 9 4 0 "" NA15510,NA18517,NA19129,NA19240 dgv81n17 3 199321392 199350866 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437361,nsv437362 M 60 0 2 "" NA18500,NA19221 nsv10407 3 199326546 199382849 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12039,nssv12747,nssv12582,nssv11690 M 31 4 0 Samples from several populations that are part of the HapMap project. "" NA12740,NA18502,NA18853,NA19132 nsv442889 3 199333526 199338015 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv471429 3 199367547 199396038 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548254,nssv548257,nssv548255 M 3 "" nsv482085 3 199367547 199396038 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558446 S 1 1 0 "" KB1 nsv10408 3 199377257 199389851 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28966,nssv12329,nssv12704,nssv11720,nssv11717,nssv11726,nssv11665 M 31 2 5 Samples from several populations that are part of the HapMap project. "" NA18517,NA18563,NA18572,NA18853,NA18980,NA19007,NA19173 nsv10409 4 5 61319 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12612,nssv12501,nssv11677,nssv11707,nssv13620 M 31 0 4 Samples from several populations that are part of the HapMap project. "" NA11830,NA18502,NA18860,NA19221 nsv821633 4 4287 54931 CNV Gain Sebat_et_al_2004 15273396 ROMA Custom Nimblegen photoprint 85000 probe ROMA oligo array nssv1421356,nssv1421357 M 31 2 0 "" nsv4192 4 8204 39648 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3227,nssv11079 M 9 2 0 "" NA12878,NA15510 nsv252 4 8267 39648 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv252 S 1 1 0 "" NA15510 dgv1563e1 4 19099 56331 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1361,essv23728,essv6047 M 271 0 0 "" NA12813,NA18603 esv2752043 4 19099 106981 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6984439,essv6984440 M 771 1 0 "" BEC_706 esv33512 4 34049 240916 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv92786 S 51 1 0 "" 21944 nsv507147 4 35380 41380 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617624 S 4 1 0 "" CHM essv5613 4 35410 56331 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18593 nsv290710 4 39092 39092 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309288 M 24 "" nsv818206 4 63508 84380 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416540,nssv1415630,nssv1415631 M 112 0 3 "" NA10835,NA12248,NA19171 nsv461141 4 63508 157596 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537579 S 1557 1 0 "" 1780854039_A nsv516451 4 63508 171476 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv693726,nssv690920,nssv690223,nssv652931,nssv656016,nssv660254,nssv677510,nssv664011,nssv681489,nssv705977,nssv679808,nssv681610,nssv670591,nssv680053,nssv696789,nssv694711 M 2026 12 4 "" nsv4193 4 111280 131236 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10389,nssv4716 M 9 2 0 "" NA18956,NA19129 nsv508985 4 121734 121734 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618024 S 4 1 0 "" CHM nsv461142 4 124851 157596 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537580 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00455 nsv829833 4 146008 297940 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443325 S 95 1 0 "" nsv10410 4 245505 247224 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv29163,nssv11974 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA10839,NA10863 nsv469736 4 248196 418202 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649757 M 265 0 5 Samples from several populations that are part of the HapMap project. "" nsv10411 4 282212 287560 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12004 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA10839 nsv461144 4 321740 463952 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537581 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01369 nsv522230 4 357927 405311 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695007 S 2026 0 1 "" nsv521895 4 405311 410688 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694667 S 2026 0 1 "" nsv461145 4 405311 487138 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537582 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00975 nsv517948 4 442106 465468 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695360 S 2026 0 1 "" nsv461146 4 460103 518289 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537583 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01405 nsv508986 4 511688 740612 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620783,nssv619357,nssv623405,nssv619358,nssv619356 M 4 3 0 "" NA10860,NA15510,NA18994 dgv1564e1 4 593208 921184 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1036,esv30 M 271 0 0 "" NA19005 nsv293468 4 618762 618853 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv312046 M 24 "" nsv4194 4 625316 647212 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv363 S 9 0 1 "" NA19240 nsv10412 4 639291 641178 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11973,nssv12069,nssv11462,nssv12734 M 31 4 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA12740,NA18517 nsv829834 4 655477 765354 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443326 S 95 0 1 "" nsv10413 4 657204 674301 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12642 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18502 nsv10414 4 686527 691955 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13650 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19221 nsv10415 4 696681 698755 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11492 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA07029 nsv290420 4 696951 697075 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308998 M 24 "" nsv4195 4 717187 757889 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7915 S 9 0 1 "" NA12156 nsv293714 4 720836 720988 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv312292 M 24 "" nsv10416 4 727736 732159 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12794,nssv11565,nssv12003,nssv12018,nssv12853,nssv12129 M 31 6 0 Samples from several populations that are part of the HapMap project. "" NA07048,NA12740,NA18504,NA18517,NA18537,NA18564 dgv132n6 4 728471 730748 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv292225,nsv292816 M 24 "" nsv10418 4 741832 745595 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13523 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18972 nsv818207 4 743774 811320 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416718 S 112 1 0 "" NA19159 nsv520136 4 749539 770713 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694365 S 2026 1 0 "" nsv515844 4 761417 770713 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv661696,nssv664993 M 2026 0 2 "" nsv526780 4 761417 776231 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703132 S 2026 0 1 "" nsv521402 4 761417 783593 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698012 S 2026 0 1 "" nsv10419 4 772146 778644 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv29193 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA10863 nsv461147 4 788341 855057 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537584 S 1557 0 1 "" 1780862347_A esv32803 4 803114 857092 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98932 S 51 1 0 "" 21606 nsv461148 4 811320 853747 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537585 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00684 nsv508987 4 821901 901433 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619359 S 4 1 0 "" NA10860 nsv292308 4 830187 830237 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310886 M 24 "" nsv291489 4 835920 835982 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310067 M 24 "" nsv292455 4 902351 902479 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311033 M 24 "" nsv4196 4 945373 988217 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7916 S 9 0 1 "" NA12156 nsv482086 4 971277 977054 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558447 S 1 1 0 "" KB1 nsv292333 4 1079010 1079245 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310911 M 24 "" nsv829835 4 1087416 1294069 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443327 S 95 1 0 "" nsv519106 4 1148821 1164691 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696582 S 2026 0 1 "" dgv636n27 4 1149510 1244760 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv461151,nsv461154,nsv461153 M 1557 0 3 "" HGDP00546,HGDP00788,NINDS_64 nsv508988 4 1174573 1342488 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619360,nssv619361 M 4 1 0 "" NA10860 nsv293242 4 1177331 1177488 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311820 M 24 "" nsv461156 4 1244760 1302224 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537590 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01303 nsv291347 4 1256276 1256468 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309925 M 24 "" nsv461157 4 1289907 1342515 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537591 S 1557 0 1 "" 1780854573_A nsv290178 4 1303283 1303283 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308756 M 24 "" nsv292086 4 1317590 1317655 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310664 M 24 "" nsv292411 4 1363347 1363458 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310989 M 24 "" nsv4197 4 1371283 1405089 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3228 S 9 1 0 "" NA12878 nsv292855 4 1381056 1381325 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311433 M 24 "" nsv290560 4 1410222 1410621 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309138 M 24 "" nsv293213 4 1489307 1489921 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311791 M 24 "" nsv524799 4 1495946 1502214 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700791 S 2026 0 1 "" dgv311n21 4 1495946 1509462 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv524623,nsv523552 M 2026 0 2 "" nsv290537 4 1525404 1525480 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309115 M 24 "" nsv291911 4 1526834 1526978 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310489 M 24 "" nsv292680 4 1535939 1536059 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311258 M 24 "" nsv10420 4 1590877 1594544 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12824 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18517 dgv1565e1 4 1592784 1782006 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv242,essv17953 M 271 0 0 "" NA12003 nsv508989 4 1592942 1815548 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619363,nssv619362,nssv619364 M 4 1 0 "" NA10860 nsv10421 4 1593726 1595334 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28807 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA12802 nsv10422 4 1605491 1608037 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12672 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18502 nsv292653 4 1689889 1689972 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311231 M 24 "" nsv290066 4 1701430 1701430 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308644 M 24 "" nsv10423 4 1730163 1754104 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11596 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18552 nsv829836 4 1744636 1870483 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443328 S 95 0 1 "" esv33438 4 1954178 1954668 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv94202 S 51 0 1 "" 22394 nsv4198 4 2060084 2086737 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7062 S 9 1 0 "" NA12156 nsv291967 4 2062069 2063321 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310545 M 24 "" nsv520780 4 2112951 2204788 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697605 S 2026 1 0 "" nsv829838 4 2124125 2318908 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443330 S 95 0 1 "" nsv526094 4 2162177 2162255 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702342 S 2026 0 1 "" nsv527189 4 2212096 2245647 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703586 S 2026 0 1 "" dgv312n21 4 2212096 2274697 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv526969,nsv527925 M 2026 0 2 "" nsv508990 4 2215197 2293285 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619365 S 4 1 0 "" NA10860 nsv4200 4 2221039 2255335 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3229 S 9 1 0 "" NA12878 nsv524965 4 2254652 2264781 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700987 S 2026 0 1 "" nsv518472 4 2315636 2484678 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695908 S 2026 0 1 "" nsv291825 4 2365499 2365749 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310403 M 24 "" esv33985 4 2386759 2387260 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100983,essv95211,essv97809,essv95709,essv95844,essv94530,essv92832,essv96234,essv97188,essv94911,essv97725,essv100547,essv96334,essv94233 M 51 6 8 "" 21693,21721,21837,21841,21911,21932,21944,22007,22075,22231,22278,22298,22371,22394 esv32578 4 2387084 2388220 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99127 S 51 0 1 "" 21938 nsv289764 4 2398999 2399250 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308342 M 24 "" nsv293699 4 2404959 2404959 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv312277 M 24 "" nsv292996 4 2411840 2411905 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311574 M 24 "" nsv290753 4 2480584 2480644 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309331 M 24 "" nsv829839 4 2661628 2696816 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443331 S 95 0 1 "" nsv516797 4 2760737 2873634 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694520,nssv658459,nssv700352,nssv670969,nssv658389 M 2026 0 5 "" nsv461162 4 2831525 2883805 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537593 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00607 nsv291612 4 2880423 2880595 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310190 M 24 "" dgv313n21 4 2883805 2918262 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv524060,nsv521858 M 2026 2 0 "" nsv526059 4 2887148 2898096 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702297 S 2026 0 1 "" nsv461163 4 2943293 3271949 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537594 S 1557 1 0 "" 1780862404_A nsv290690 4 2999752 2999820 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309268 M 24 "" nsv461164 4 3186019 3252838 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537595 S 1557 0 1 "" 1780854205_A nsv524211 4 3252838 3307457 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700098 S 2026 0 1 "" nsv524212 4 3312453 3320391 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700099 S 2026 1 0 "" nsv461165 4 3320391 3379106 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537596 S 1557 0 1 "" 1780854479_A nsv292231 4 3347859 3348017 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310809 M 24 "" nsv290212 4 3348003 3348215 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308790 M 24 "" nsv4201 4 3421650 3447979 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4717 S 9 1 0 "" NA19129 nsv290570 4 3430453 3430519 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309148 M 24 "" essv879 4 3431313 3610714 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19000 dgv1566e1 4 3431313 4469058 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1820,esv874 M 271 0 0 "" NA18976 dgv637n27 4 3442134 3488078 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv461168,nsv461166,nsv461167 M 1557 0 3 "" HGDP00330,HGDP00975,HGDP01191 nsv461169 4 3466825 3488078 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537600 S 1557 0 1 "" NINDS_51 nsv818208 4 3471305 3481472 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417849 S 112 0 1 "" NA18853 nsv516505 4 3471305 3541531 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv668735,nssv700507,nssv695086,nssv699348,nssv682140,nssv674645 M 2026 0 6 "" nsv10424 4 3474503 3505294 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13680 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19221 nsv4202 4 3476499 3521842 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7063 S 9 0 1 "" NA12156 nsv829840 4 3481185 3660000 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443334,nssv1443333,nssv1443332,nssv1443335 M 95 0 4 "" nsv4203 4 3492783 3526419 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7917,nssv4718 M 9 2 0 "" NA12156,NA19129 nsv508992 4 3494490 3572388 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619366 S 4 1 0 "" NA10860 nsv10425 4 3504307 3511896 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12854,nssv13710 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA18517,NA19221 nsv433362 4 3504488 3522755 CNV Gain Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463243 S 9 1 0 Samples from several populations that are part of the HapMap project. "" NA18517 nsv441855 4 3506413 3510604 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv461170 4 3508723 3533909 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537601 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00934 essv14004 4 3509131 3547567 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19222 nsv10426 4 3516459 3604679 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13740,nssv12883 M 31 1 1 Samples from several populations that are part of the HapMap project. "" NA18504,NA19221 nsv293632 4 3521887 3521974 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv312210 M 24 "" nsv461171 4 3522755 3559652 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537602 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00461 dgv21e24 4 3532826 3534091 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH esv2750539,esv2750588,esv2750641,esv2750745,esv2750750,esv2750564,esv2750728 M 51 0 7 "" 21603,21659,21721,21791,21805,22231,22286 nsv829841 4 3539387 3700388 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443336 S 95 0 1 "" nsv293764 4 3550786 3550838 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv312342 M 24 "" nsv829842 4 3604722 3776030 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443349,nssv1443354,nssv1443348,nssv1443341,nssv1443355,nssv1443342,nssv1443338,nssv1443337,nssv1443356,nssv1443339,nssv1443344,nssv1443352,nssv1443353,nssv1443347,nssv1443343,nssv1443346,nssv1443350,nssv1443345 M 95 0 18 "" nsv292851 4 3618993 3618993 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311429 M 24 "" dgv133n6 4 3630466 3630555 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv292997,nsv290655 M 24 "" nsv290018 4 3638432 3638432 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308596 M 24 "" essv3590 4 3661108 3751308 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18969 esv35161 4 3661344 3759528 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6987039,essv6980217 M 771 1 0 "" NA18969 nsv10427 4 3704944 3709751 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11728,nssv12159,nssv13553 M 31 0 3 Samples from several populations that are part of the HapMap project. "" NA12740,NA18972,NA19144 dgv638n27 4 3707655 3751628 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv461175,nsv461174 M 1557 0 2 "" HGDP00546,HGDP01001 nsv10429 4 3713862 3715621 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12913,nssv12531,nssv12061,nssv12884 M 31 4 0 Samples from several populations that are part of the HapMap project. "" NA18504,NA18517,NA18860,NA19240 nsv521220 4 3750568 3751154 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv685670,nssv692008 M 2026 0 2 "" nsv519631 4 3791335 3817041 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv660187,nssv676876,nssv690271,nssv678280,nssv657243,nssv677580,nssv688688,nssv692220 M 2026 0 8 "" nsv433432 4 3817041 3829411 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463313 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA18956 esv32745 4 3849042 3850839 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97257 S 51 1 0 "" 22075 nsv10430 4 3853163 3855629 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12048,nssv13583 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA18564,NA18972 nsv10431 4 3855199 3856573 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv29223 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA10863 nsv10432 4 3862376 3868911 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12033 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA07048 nsv292790 4 3875710 3875762 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311368 M 24 "" nsv290446 4 3898304 3898368 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309024 M 24 "" nsv10433 4 3906487 3910032 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12914,nssv12943 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18504,NA18517 nsv517008 4 4035232 4317832 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv656521,nssv673095,nssv698260,nssv687622,nssv705183,nssv677878,nssv660978,nssv659839,nssv653604,nssv690412,nssv677344,nssv661794 M 2026 2 10 "" nsv508270 4 4129768 4310397 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622478 S 4 0 1 "" NA18994 nsv10434 4 4169278 4173166 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12702 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18502 nsv469857 4 4170664 4359998 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649878 M 265 0 0 Samples from several populations that are part of the HapMap project. "" nsv4204 4 4215134 4297207 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10390,nssv4719,nssv3230 M 9 0 3 "" NA12878,NA18956,NA19129 nsv10435 4 4254415 4266891 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11466 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA10863 nsv10436 4 4345855 4347437 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11695 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18980 nsv10437 4 4406192 4412759 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11725 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18980 nsv4205 4 4426771 4457473 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv365 S 9 1 0 "" NA19240 esv34196 4 4433670 8751117 OTHER Inversion Giglio et al 2002 12058347 FISH Not Provided "" S 7 "" nsv461176 4 4461312 4473452 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537606 S 1557 0 1 "" NINDS_20 nsv519201 4 4472850 4476787 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696685 S 2026 0 1 "" nsv523027 4 4473452 4478453 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698707 S 2026 1 0 "" nsv292541 4 4531996 4533932 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311119 M 24 "" nsv528931 4 4609796 4620833 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705621 S 2026 1 0 "" nsv521279 4 4652046 4753348 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv691632,nssv692299 M 2026 0 2 "" nsv292566 4 4686114 4686711 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311144 M 24 "" nsv829843 4 4714949 4871806 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443357 S 95 0 1 "" nsv518407 4 5035583 5050897 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695838 S 2026 0 1 "" nsv526879 4 5050897 5053277 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703237 S 2026 0 1 "" nsv4206 4 5100019 5133337 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2446 S 9 1 0 "" NA18555 nsv521349 4 5192101 5196718 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697959 S 2026 0 1 "" nsv527143 4 5239522 5240552 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703531 S 2026 0 1 "" nsv471805 4 5263552 5263642 CNV Loss Hinds et al 2006 16327809 Oligo_aCGH,PCR Custom Perlegen arrays nssv646086 M 1.152 95 "" dgv134n6 4 5263570 5263631 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv290099,nsv293566 M 24 "" esv2752049 4 5280460 5552221 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6985861,essv6985860,essv6990158,essv6989506,essv6985862 M 771 0 1 "" SPC_7 dgv639n27 4 5508332 5521617 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv461179,nsv461180 M 1557 0 2 "" HGDP00897,NINDS_173 nsv527989 4 5515503 5518910 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704512 S 2026 1 0 "" nsv520417 4 5575367 5598409 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv671327,nssv689813 M 2026 0 2 "" nsv461181 4 5579130 5587882 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537609 S 1557 0 1 "" 1780862433_A nsv522680 4 5623205 5672206 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv706088 S 2026 1 0 "" nsv526713 4 5647306 5672206 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703053 S 2026 1 0 "" nsv4207 4 5682057 5713917 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10391 S 9 1 0 "" NA18956 esv2422511 4 5700938 5765359 CNV Deletion Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161304 S 181 0 1 "" ND01708 nsv523706 4 5800261 5805700 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699515 S 2026 0 1 "" nsv508993 4 5807941 5863892 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623406,nssv619367 M 4 2 0 "" NA10860,NA18994 nsv829844 4 5839176 6045184 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443358 S 95 1 0 "" nsv461182 4 5853375 5900056 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537610 S 1557 0 1 "" NINDS_36 nsv520004 4 5861581 5861853 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697173 S 2026 0 1 "" nsv522904 4 5872187 5876955 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698562 S 2026 0 1 "" dgv314n21 4 5876941 5891127 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv524558,nsv523234 M 2026 0 2 "" nsv517345 4 5880233 5897389 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv663988,nssv657283,nssv660795,nssv651788,nssv654451,nssv663252,nssv669310,nssv657622,nssv670173 M 2026 0 9 "" nsv519748 4 5927259 5930638 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv674837,nssv658132,nssv672685,nssv662739,nssv676491,nssv690919,nssv679363 M 2026 0 7 "" nsv293630 4 5982087 5982173 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv312208 M 24 "" nsv829845 4 5989867 6208596 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443359 S 95 0 1 "" nsv441856 4 6013497 6015564 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv525088 4 6037781 6044623 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701146 S 2026 0 1 "" nsv524886 4 6054642 6061764 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700892 S 2026 1 0 "" nsv518662 4 6057271 6061044 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696112 S 2026 0 1 "" nsv4208 4 6095824 6129060 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4720 S 9 1 0 "" NA19129 nsv4209 4 6138727 6172108 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7918 S 9 1 0 "" NA12156 nsv290545 4 6156773 6156773 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309123 M 24 "" nsv461185 4 6160804 6183502 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537612 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00515 nsv829846 4 6196304 6360296 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443360 S 95 0 1 "" nsv4211 4 6208738 6242376 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv366 S 9 1 0 "" NA19240 nsv290071 4 6218330 6218489 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308649 M 24 "" nsv292531 4 6281072 6281072 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311109 M 24 "" nsv469711 4 6329819 6504169 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649732 M 265 0 30 Samples from several populations that are part of the HapMap project. "" dgv640n27 4 6374561 6421426 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv461186,nsv461187 M 1557 0 2 "" HGDP00817,HGDP01190 nsv4212 4 6376638 6410103 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3231 S 9 1 0 "" NA12878 nsv290117 4 6456548 6456727 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308695 M 24 "" nsv10438 4 6469722 6472369 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12908 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA12155 nsv829847 4 6507046 6678557 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443361 S 95 1 0 "" nsv4213 4 6518022 6551655 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3122 S 9 1 0 "" NA18555 nsv527210 4 6605798 6606777 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703610 S 2026 1 0 "" nsv4214 4 6613368 6635126 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3123 S 9 1 0 "" NA18555 nsv829849 4 6623620 6818027 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443363 S 95 0 1 "" nsv291891 4 6658949 6662501 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310469 M 24 "" nsv292992 4 6689547 6689922 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311570 M 24 "" nsv461189 4 6696559 6731324 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537615 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00546 nsv526206 4 6714548 6719814 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702469 S 2026 1 0 "" dgv1567e1 4 6725902 6739063 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv887,essv24097 M 271 0 0 "" NA07048 nsv4215 4 6728308 6772593 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2447 S 9 0 1 "" NA18555 nsv10440 4 6735228 6739994 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12063 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA07048 essv23633 4 6737076 6739063 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA07055 nsv10441 4 6741348 6745994 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12561 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18860 nsv526314 4 6928992 6986227 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702598 S 2026 1 0 "" nsv519565 4 6954734 6979123 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv676697,nssv703985,nssv672381,nssv656901 M 2026 3 1 "" nsv4216 4 6994664 7033701 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7920,nssv4668 M 9 0 2 "" NA12156,NA19129 nsv290080 4 7015357 7018406 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308658 M 24 "" dgv1568e1 4 7106220 7387973 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv8215,essv16696,essv15262,essv14158,essv13695,essv11782,esv85,essv11576,essv17079,essv11276 M 271 0 0 "" NA18504,NA19094,NA19116,NA19119,NA19140,NA19142,NA19172,NA19173,NA19204 nsv469847 4 7121597 7286513 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649868 M 265 0 0 Samples from several populations that are part of the HapMap project. "" nsv4217 4 7153584 7198302 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7921 S 9 0 1 "" NA12156 nsv461191 4 7220669 7247073 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537616 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00857 nsv829850 4 7230581 7432088 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443365,nssv1443364 M 95 0 2 "" nsv291209 4 7285105 7285218 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309787 M 24 "" nsv461196 4 7288634 7309852 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537618 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01300 nsv520086 4 7302056 7302442 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv660570,nssv677819 M 2026 0 2 "" nsv461197 4 7302056 7340434 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537619 S 1557 0 1 "" 1780862416_A nsv508994 4 7326587 7622727 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619368,nssv623407 M 4 2 0 "" NA10860,NA18994 nsv4218 4 7343268 7388129 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4722 S 9 0 1 "" NA19129 nsv291426 4 7350125 7350189 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310004 M 24 "" nsv461199 4 7371332 7388198 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537620 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01283 nsv291540 4 7375609 7375692 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310118 M 24 "" nsv469758 4 7488155 7664321 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649779 M 265 0 0 Samples from several populations that are part of the HapMap project. "" nsv461203 4 7541823 7552679 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537621 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00491 nsv461204 4 7545971 7556423 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537622 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00788 nsv461205 4 7552089 7560197 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537623 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00774 nsv292306 4 7574590 7575242 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310884 M 24 "" nsv520804 4 7591934 7593185 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv679809,nssv675645 M 2026 0 2 "" nsv527419 4 7598148 7598493 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703857 S 2026 0 1 "" nsv291240 4 7601681 7601916 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309818 M 24 "" nsv290990 4 7606120 7606120 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309568 M 24 "" nsv526748 4 7639873 7641580 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703094 S 2026 0 1 "" dgv641n27 4 7639873 7662950 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv461208,nsv461209,nsv461207 M 1557 0 3 "" HGDP00788,HGDP01027,HGDP01339 dgv642n27 4 7648522 7666933 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv461210,nsv461211 M 1557 0 2 "" HGDP00784,HGDP00857 nsv528667 4 7651745 7665618 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705305 S 2026 0 1 "" nsv524838 4 7653645 7655100 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700840 S 2026 0 1 "" nsv508272 4 7710038 7840183 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619932 S 4 0 1 "" NA15510 nsv508995 4 7710038 7840183 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619369 S 4 1 0 "" NA10860 nsv517503 4 7750401 7757977 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv656522,nssv652206 M 2026 0 2 "" nsv4219 4 7791044 7812871 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7922 S 9 0 1 "" NA12156 nsv290116 4 7796599 7796705 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308694 M 24 "" nsv293826 4 7831648 7832750 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv312404 M 24 "" nsv291783 4 7843945 7844399 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310361 M 24 "" nsv289454 4 7868476 7868541 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308032 M 24 "" nsv290242 4 7872759 7872759 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308820 M 24 "" nsv291019 4 7917872 7918011 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309597 M 24 "" nsv522369 4 7944895 7950048 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695149 S 2026 1 0 "" nsv508996 4 7959205 8004311 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619370 S 4 1 0 "" NA10860 nsv291213 4 8016563 8016621 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309791 M 24 "" nsv525135 4 8073559 8077100 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701205 S 2026 1 0 "" nsv829851 4 8076769 8167131 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443376,nssv1443366,nssv1443369,nssv1443368,nssv1443367,nssv1443375,nssv1443374,nssv1443370,nssv1443371,nssv1443372 M 95 0 10 "" nsv469779 4 8083324 8295717 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649800 M 265 0 0 Samples from several populations that are part of the HapMap project. "" nsv829852 4 8109977 8269338 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443378,nssv1443380,nssv1443379,nssv1443381,nssv1443377 M 95 1 4 "" nsv508997 4 8164286 8249259 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619371 S 4 1 0 "" NA10860 dgv643n27 4 8203245 8238008 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv461214,nsv461215 M 1557 0 2 "" HGDP00774,NINDS_50 nsv290326 4 8251422 8251636 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308904 M 24 "" nsv290664 4 8251601 8251813 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309242 M 24 "" nsv461216 4 8272605 8394482 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537632 S 1557 0 1 "" NINDS_111 nsv441857 4 8283955 8291990 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv829853 4 8290136 8438939 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443382,nssv1443385,nssv1443383 M 95 1 2 "" nsv291097 4 8304575 8304627 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309675 M 24 "" nsv293278 4 8304721 8304770 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311856 M 24 "" nsv4220 4 8336922 8370576 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3232 S 9 1 0 "" NA12878 nsv461218 4 8372855 8438197 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537634 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01023 nsv4222 4 8409954 8438810 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4723 S 9 1 0 "" NA19129 nsv4223 4 8466144 8493356 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7923 S 9 1 0 "" NA12156 nsv526508 4 8475994 8489625 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702818 S 2026 0 1 "" nsv461220 4 8491015 8576465 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537635 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00058 nsv524994 4 8491903 8498928 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701025 S 2026 0 1 "" nsv829854 4 8520992 8624478 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443387,nssv1443386,nssv1443389,nssv1443388 M 95 3 1 "" nsv4224 4 8621798 8664533 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4669 S 9 0 1 "" NA19129 dgv1569e1 4 8640244 9295727 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv20270,essv8771,essv21060,essv12402,essv821,essv17640,essv5301,essv12242,essv16975,essv10223,essv8323,essv19466,essv19784,essv15210,essv13469,essv23787,essv24433,essv15696,essv20077,essv22348,essv23406,essv11428 M 271 0 0 "" NA06985,NA06991,NA07048,NA10835,NA10854,NA11840,NA12144,NA12707,NA12753,NA12763,NA18563,NA18857,NA18912,NA18973,NA19092,NA19094,NA19101,NA19103,NA19144,NA19152,NA19192,NA19238 dgv1570e1 4 8640244 9952736 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv3045,esv634 M 271 0 0 "" NA18981 nsv461221 4 8652354 8672965 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537636 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00776 nsv4225 4 8709105 8787408 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3124,nssv3233,nssv10392,nssv7064,nssv10393,nssv367,nssv4726,nssv4724,nssv368 M 9 6 0 "" NA12156,NA12878,NA18555,NA18956,NA19129,NA19240 esv33219 4 8716722 8719390 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv96827,essv94322,essv97899,essv97303,essv92760,essv93494,essv99745,essv92662,essv99221 M 51 9 0 "" 21659,21808,21837,21879,21944,22128,22217,22233,22275 nsv829855 4 8722950 8847678 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443398,nssv1443409,nssv1443391,nssv1443390,nssv1443392,nssv1443405,nssv1443397,nssv1443394,nssv1443393,nssv1443396,nssv1443408,nssv1443404,nssv1443401,nssv1443400,nssv1443399,nssv1443402,nssv1443403 M 95 6 11 "" nsv521867 4 8726137 8759767 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694639 S 2026 0 1 "" nsv518282 4 8729247 8738535 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695713 S 2026 0 1 "" nsv4226 4 8734598 8774353 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9878,nssv4725 M 9 0 2 "" NA18507,NA19129 nsv10442 4 8739551 8759351 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12091,nssv12591,nssv11747,nssv28837,nssv13613,nssv12024,nssv12189,nssv11750,nssv12123,nssv12732,nssv11755,nssv29048,nssv13800,nssv12807,nssv12938,nssv11496,nssv12359,nssv11737,nssv12034,nssv29162,nssv11626,nssv12078,nssv11522,nssv11758 M 31 24 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10847,NA10863,NA11830,NA12155,NA12740,NA12802,NA12872,NA18502,NA18552,NA18563,NA18564,NA18853,NA18860,NA18972,NA18975,NA18980,NA19132,NA19144,NA19173,NA19221,NA19240 nsv461223 4 8765304 8801815 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537637 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00802 dgv1571e1 4 8823992 9187035 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv13260,essv14248,essv14037 M 271 0 0 "" NA18862,NA19100,NA19201 essv8080 4 8823992 9354648 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19161 nsv517369 4 8847709 9250009 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv688724,nssv675707,nssv680560,nssv655155,nssv655410,nssv685305,nssv664792,nssv692994,nssv672057,nssv661964,nssv668216,nssv666328,nssv664148,nssv665752,nssv674418,nssv668855,nssv660844,nssv673317,nssv684577,nssv670253,nssv659825,nssv687531,nssv671591,nssv654648,nssv673908,nssv682545,nssv663956,nssv671305,nssv693701,nssv680893,nssv673194,nssv658027,nssv678081,nssv660797,nssv651829,nssv660940,nssv667409,nssv680054,nssv670174,nssv662213,nssv675268,nssv685824,nssv673688,nssv665135,nssv693670,nssv686726,nssv685493,nssv658336,nssv670514,nssv662025,nssv662474,nssv682001,nssv666217,nssv664012,nssv689922,nssv681340,nssv661077,nssv666833,nssv654296,nssv681653,nssv682455,nssv684170,nssv662085,nssv663009,nssv659055,nssv692811,nssv652350,nssv668619,nssv661179,nssv674103,nssv663290 M 2026 67 4 "" nsv10443 4 8849955 9047309 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv29078,nssv12153,nssv11656,nssv11756,nssv12151,nssv11662,nssv29192,nssv12968,nssv11818,nssv12792,nssv28867,nssv13830,nssv11807,nssv13643,nssv12621,nssv12138,nssv12219,nssv12973,nssv11595,nssv11526,nssv11815,nssv12837,nssv11810,nssv12054,nssv28996,nssv12064,nssv11797,nssv12389 M 31 28 0 Samples from several populations that are part of the HapMap project. "" NA07048,NA10839,NA10847,NA10863,NA11830,NA12155,NA12740,NA12802,NA12872,NA18502,NA18504,NA18537,NA18552,NA18563,NA18564,NA18572,NA18853,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19144,NA19173,NA19221,NA19240 nsv469637 4 9000912 9116160 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649563 M 265 0 8 Samples from several populations that are part of the HapMap project. "" nsv471623 4 9000912 9270328 CNV Gain+Loss Sharp et al 2005 15918152 BAC_aCGH,FISH Eichler Segmental Duplication BAC array nssv549723,nssv650980,nssv549721,nssv549724,nssv549714,nssv549719,nssv650988,nssv650981,nssv650979,nssv650995,nssv549734,nssv549726,nssv549727,nssv650989,nssv650990,nssv549733,nssv650991,nssv650978,nssv650994,nssv650983,nssv650984,nssv650985,nssv549722,nssv549713,nssv650977,nssv549731,nssv549720,nssv650992,nssv549729,nssv549716,nssv549717,nssv549728,nssv549718,nssv549725,nssv549730,nssv650982,nssv650986,nssv549732,nssv650987,nssv650993,nssv549715 M 48 6 20 "" JK1051,JK776,NA10469,NA10470,NA10472,NA10473,NA10494,NA10496,NA10967,NA10969,NA10971,NA10976,NA10979,NA11323,NA11521,NA11523,NA11776,NA15725,NA15729,NA15730,NA15733,NA17014,NA17015,NA17016,NA17017,NA17051 dgv1572e1 4 9000913 9120591 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv14412,essv6753,essv1522,essv3792,essv6692,essv22083,essv4178,essv2807,essv5574,essv24930,essv5213,essv4563,essv9235,essv22417,essv6945,essv1360,essv3159,essv2441,essv23191,essv18154,essv23526,essv7295,essv5712,essv19080,essv10440,essv4696,essv22402,essv1039,essv24868,essv23858,essv1917,essv23600,essv2640 M 271 0 0 "" NA06993,NA06994,NA07000,NA07022,NA07055,NA10861,NA11993,NA12006,NA12154,NA12156,NA12875,NA18507,NA18515,NA18524,NA18526,NA18529,NA18562,NA18582,NA18592,NA18593,NA18608,NA18611,NA18622,NA18943,NA18959,NA18967,NA18980,NA18987,NA18999,NA19005,NA19007,NA19012,NA19128 dgv1573e1 4 9000913 9190837 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv3281,essv14694,essv5280,essv24787,essv1882,essv265,essv8639,essv13775,essv20652,essv8483,essv2575,essv19625,essv33,essv11834,essv24237,essv21257,essv13570,essv1752,essv23465,essv10765,essv6377,essv2526,essv19262,essv393,essv6894,essv12616,essv3857,essv12495,essv14505,essv15832,essv22172,essv10026,essv689,essv18599,essv16162,essv20776,essv17921,essv13167,essv7147,essv20596,essv4494,essv15053,essv9934,essv7806,essv13065,essv12311,essv4120,essv5805,essv7554,essv7335,essv6004,essv11256,essv6186,essv9053,essv16672,essv3460,essv1240,essv12538,essv22667,essv22930,essv8921,essv4906,essv13612,essv22444,essv18829,essv4270,essv16403,essv24690,essv8841,essv11749,essv11649,essv4771,essv14284,essv11017,essv10109,essv20909,essv11506,essv10947,essv4984,essv9371,essv16326,essv866,essv13869,essv23371,essv10680,essv23047,essv17312,essv15734,essv19936,essv22484,essv24597,essv8377,essv21677,essv17094,essv6570,essv12971,essv9126,essv9462,essv25010,essv7062,essv14100,essv10544,essv15291,essv14862,essv9775,essv15007,essv5445,essv18358,essv10839,essv17206,essv16788,essv3729,essv16871,essv22004,essv7710,essv7751,essv9657,essv12705,essv2306,essv18735,essv1213,essv21202,essv1479,essv11839,essv5096,essv3409,essv22924,essv17256,essv3558,essv22781,essv16199,essv24124,essv2071,essv14180,essv18967,essv461,essv22603,essv2834,essv15587,essv6997,essv14467,essv16053,essv21454,essv17747,essv2230,essv527,essv1119,essv11958,essv21781,essv2242,essv6335,essv15423,essv20197,essv120,essv3077,essv15541,essv3990,essv10278,essv14628 M 271 0 0 "" NA07019,NA07034,NA07056,NA07348,NA07357,NA10831,NA10838,NA10839,NA10847,NA10855,NA10856,NA10857,NA10860,NA11829,NA11830,NA11832,NA11882,NA11992,NA11994,NA11995,NA12003,NA12005,NA12146,NA12155,NA12234,NA12239,NA12248,NA12717,NA12750,NA12751,NA12752,NA12760,NA12761,NA12801,NA12812,NA12813,NA12874,NA12892,NA18500,NA18501,NA18502,NA18503,NA18504,NA18505,NA18506,NA18508,NA18516,NA18521,NA18522,NA18523,NA18532,NA18537,NA18542,NA18545,NA18547,NA18552,NA18555,NA18558,NA18561,NA18566,NA18570,NA18571,NA18572,NA18577,NA18603,NA18605,NA18609,NA18612,NA18620,NA18621,NA18624,NA18632,NA18633,NA18637,NA18852,NA18853,NA18854,NA18855,NA18856,NA18858,NA18859,NA18860,NA18861,NA18862,NA18863,NA18870,NA18871,NA18872,NA18913,NA18914,NA18940,NA18944,NA18945,NA18947,NA18949,NA18951,NA18952,NA18953,NA18960,NA18964,NA18965,NA18966,NA18968,NA18969,NA18970,NA18971,NA18972,NA18975,NA18976,NA18978,NA18990,NA18991,NA18992,NA18994,NA18995,NA18997,NA18998,NA19000,NA19003,NA19093,NA19098,NA19099,NA19100,NA19102,NA19127,NA19129,NA19130,NA19131,NA19132,NA19137,NA19138,NA19139,NA19140,NA19142,NA19143,NA19145,NA19153,NA19154,NA19159,NA19160,NA19161,NA19171,NA19172,NA19173,NA19193,NA19194,NA19200,NA19201,NA19202,NA19203,NA19204,NA19205,NA19207,NA19208,NA19209,NA19221,NA19223,NA19239,NA19240 dgv1574e1 4 9000913 9385067 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv3775,essv20711,essv11186,essv6455,essv23898,essv9613 M 271 0 0 "" NA12752,NA12814,NA18637,NA18961,NA19141,NA19211 nsv4227 4 9002456 9073202 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10394,nssv2448 M 9 0 2 "" NA18555,NA18956 nsv829856 4 9046577 9155418 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443421,nssv1443416,nssv1443415,nssv1443417,nssv1443414,nssv1443411,nssv1443422,nssv1443413,nssv1443410,nssv1443420,nssv1443412,nssv1443419 M 95 4 8 "" nsv818209 4 9047385 9081081 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418262,nssv1418142 M 112 2 0 "" NA19094,NA19143 dgv49n64 4 9047385 9128192 CNV Gain Wang_et_al_2007 17921354 SNP_array nsv818210,nsv818214 M 112 5 0 "" NA18609,NA19141,NA19144,NA19145,NA19239 dgv644n27 4 9047385 9189734 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv461245,nsv461229,nsv461234,nsv461238,nsv461230,nsv461225,nsv461246,nsv461231,nsv461243,nsv461236,nsv461242,nsv461240,nsv461232,nsv461226,nsv461224,nsv461244,nsv461237,nsv461241,nsv461227,nsv461233,nsv461251,nsv461249,nsv461247,nsv461248,nsv461235 M 1557 25 0 "" 1780854296_A,1780862404_A,HGDP00029,HGDP00106,HGDP00139,HGDP00455,HGDP00457,HGDP00464,HGDP00470,HGDP00471,HGDP00472,HGDP00479,HGDP00779,HGDP00907,HGDP00910,HGDP01032,HGDP01034,HGDP01035,HGDP01199,HGDP01200,HGDP01231,HGDP01406,HGDP01411,HGDP01414,HGDP01416 nsv818212 4 9047385 9189734 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418261 S 112 1 0 "" NA19093 dgv645n27 4 9047385 9276059 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv461258,nsv461254,nsv461252,nsv461257,nsv461255,nsv461256,nsv461253 M 1557 7 0 "" 1780854123_A,1780854382_A,HGDP00456,HGDP00906,HGDP01205,HGDP01412,HGDP01417 nsv818213 4 9047385 9396250 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417617 S 112 1 0 "" NA18978 nsv442890 4 9048570 9092100 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" essv12007 4 9048572 9083510 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19141 dgv1575e1 4 9048572 9197880 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv12082,essv11299,essv12102,essv13950 M 271 0 0 "" NA18863,NA19099,NA19160,NA19173 dgv1576e1 4 9048572 9272187 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv12920,essv1659,essv8556 M 271 0 0 "" NA18503,NA18961,NA19094 dgv1577e1 4 9048572 9488074 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2151,essv5423,essv19519 M 271 0 0 "" NA12864,NA18542,NA18978 nsv10444 4 9051799 9083084 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13673,nssv12822 M 31 1 1 Samples from several populations that are part of the HapMap project. "" NA18502,NA18972 essv7894 4 9056333 9125009 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19239 nsv469529 4 9077206 9270328 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649638 M 265 0 42 Samples from several populations that are part of the HapMap project. "" nsv469611 4 9083632 9233947 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649535 M 265 0 0 Samples from several populations that are part of the HapMap project. "" nsv442891 4 9092101 9133245 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv4228 4 9114856 9176087 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7065,nssv10395,nssv3234,nssv2449 M 9 0 4 "" NA12156,NA12878,NA18555,NA18956 nsv10445 4 9118875 9137578 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12419 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19173 nsv508273 4 9119131 9312649 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622479 S 4 0 1 "" NA18994 nsv525830 4 9128192 9276059 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702019 S 2026 0 1 "" nsv442892 4 9137499 9155614 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv10446 4 9147001 9161176 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12651 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18860 nsv433363 4 9156504 9263033 CNV Gain Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463244 S 9 1 0 Samples from several populations that are part of the HapMap project. "" NA19240 nsv292012 4 9171398 9171477 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310590 M 24 "" essv18917 4 9197880 9466981 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12717 nsv10447 4 9207638 9220491 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12852,nssv13703 M 31 1 1 Samples from several populations that are part of the HapMap project. "" NA18502,NA18972 nsv520290 4 9227363 9302678 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697329 S 2026 0 1 "" essv3654 4 9285384 9385067 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18991 nsv469511 4 9286256 9430298 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649637 M 265 0 0 Samples from several populations that are part of the HapMap project. "" nsv4229 4 9289568 9336164 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10396 S 9 0 1 "" NA18956 nsv10448 4 9295439 9309476 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12944,nssv12084,nssv11686,nssv11625,nssv13003,nssv12168,nssv12681,nssv11845,nssv11837,nssv12867 M 31 0 10 Samples from several populations that are part of the HapMap project. "" NA18504,NA18517,NA18537,NA18552,NA18563,NA18564,NA18860,NA18975,NA18980,NA19132 nsv509879 4 9334167 9340167 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622047 S 4 0 1 "" NA10860 nsv482087 4 9459527 9461902 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558448 S 1 1 0 "" KB1 nsv10449 4 9505058 9509039 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12711 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18860 nsv461259 4 9510376 9539967 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537673 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00832 nsv433443 4 9538305 9548744 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463324 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA18956 nsv519519 4 9539967 9541695 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694171,nssv687874,nssv656596,nssv692351,nssv683059 M 2026 0 5 "" nsv524654 4 9539967 9548744 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700621 S 2026 0 1 "" esv2752052 4 9588141 9989380 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6984826,essv6984827,essv6984828,essv6984829,essv6988855 M 771 1 0 "" SPC_181 nsv527211 4 9588370 9620919 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703611 S 2026 0 1 "" nsv525177 4 9607231 9626974 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701253 S 2026 0 1 "" nsv290026 4 9628579 9628828 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308604 M 24 "" dgv135n6 4 9633091 9633421 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv291745,nsv291144 M 24 "" nsv527147 4 9658158 9660744 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703536 S 2026 1 0 "" nsv829857 4 9658783 9832104 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443423 S 95 1 0 "" nsv469621 4 9663939 9818556 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649546 M 265 0 10 Samples from several populations that are part of the HapMap project. "" essv3661 4 9728030 9740273 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18991 nsv523268 4 9732351 9738595 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699002 S 2026 1 0 "" dgv1578e1 4 9734495 9950048 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv20404,essv18719,essv325,essv6362,essv14332,essv19462,essv18246,essv16271,essv14740,essv6728,essv421,essv2839,essv4259 M 271 0 0 "" NA10830,NA10846,NA11840,NA12874,NA18603,NA18608,NA18609,NA18952,NA18953,NA18971,NA19159,NA19161,NA19194 nsv525589 4 9756731 9776083 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701728 S 2026 0 1 "" nsv524687 4 9756731 9835372 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700659 S 2026 1 0 "" nsv10451 4 9794973 9796501 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11816 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19007 esv2752053 4 9801088 9946569 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6981685,essv6981686,essv6981687,essv6981688,essv6989256,essv6988000 M 771 0 1 "" BEC_319 nsv436933 4 9801524 9808201 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv466814 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA10830 essv1808 4 9802458 9815460 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18971 nsv437909 4 9803247 9804415 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv468098,nssv468096 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA10830,NA12154 nsv10452 4 9812284 9813847 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv29026,nssv13860,nssv11840,nssv11846,nssv12897,nssv13033,nssv11556,nssv11848,nssv11875,nssv12998,nssv12144,nssv11692,nssv12183,nssv11655,nssv11827,nssv12974,nssv12181,nssv12198,nssv13733,nssv12124,nssv12741,nssv11867,nssv12882,nssv12249,nssv11716,nssv11552,nssv29222,nssv12479 M 31 27 1 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10847,NA10863,NA11830,NA12155,NA12740,NA18502,NA18504,NA18517,NA18537,NA18552,NA18563,NA18564,NA18572,NA18853,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19144,NA19173,NA19221,NA19240 nsv291890 4 9812377 9812852 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310468 M 24 "" esv33115 4 9818225 9823951 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101108,essv93807,essv96797,essv96992,essv94533,essv92781,essv97085,essv97655,essv100161 M 51 9 0 "" 21618,21634,21659,21817,21932,21944,22075,22278,22286 nsv292409 4 9823457 9823617 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310987 M 24 "" nsv519610 4 9829502 9835372 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv657056,nssv679384,nssv672357 M 2026 0 3 "" nsv508274 4 9855560 9915672 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618734,nssv619933 M 4 0 2 "" NA10860,NA15510 nsv526558 4 9870773 9880862 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702873 S 2026 0 1 "" nsv253 4 9874892 9914828 CNV Loss Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv253 S 1 0 1 "" NA15510 nsv4230 4 9874892 9929132 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv369,nssv2450,nssv10397,nssv11081,nssv3235,nssv4727,nssv7066 M 9 0 7 "" NA12156,NA12878,NA15510,NA18555,NA18956,NA19129,NA19240 nsv10453 4 9886886 9912407 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12213,nssv11905,nssv11746,nssv13028,nssv13004,nssv12912,nssv11897,nssv29108,nssv13793,nssv11876,nssv11685,nssv11870,nssv13890,nssv11722,nssv12509,nssv12211,nssv11582,nssv11586,nssv12801,nssv12279,nssv28897,nssv12228,nssv29056,nssv11878,nssv12927 M 31 25 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10863,NA12155,NA12740,NA12802,NA12872,NA18502,NA18517,NA18537,NA18552,NA18563,NA18564,NA18572,NA18853,NA18860,NA18942,NA18972,NA18980,NA19007,NA19132,NA19144,NA19173,NA19221,NA19240 esv33460 4 9888544 9909844 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101452,essv98744,essv94768,essv101275,essv94369,essv97076,essv95504,essv99040,essv99944,essv99638,essv92649,essv98109,essv99240,essv100532,essv99547,essv96315,essv96245,essv94276 M 51 17 0 "" 21603,21606,21791,21805,21808,21817,21847,21938,22086,22217,22233,22259,22275,22298,22335,22371,22394 nsv442893 4 9890425 9911537 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv437910 4 9894910 9923517 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv468104,nssv468166,nssv468122,nssv468160,nssv468150,nssv468175,nssv468131,nssv468115,nssv468199,nssv468113,nssv468109,nssv468099,nssv468107,nssv468196,nssv468123,nssv468184,nssv468118,nssv468188,nssv468136,nssv468128,nssv468120,nssv468189,nssv468167,nssv468168,nssv468147,nssv468151,nssv468154,nssv468162,nssv468106,nssv468143,nssv468133,nssv468156,nssv468190,nssv468145,nssv468172,nssv468194,nssv468195,nssv468137,nssv468132,nssv468148,nssv468176,nssv468139,nssv468138,nssv468100,nssv468125,nssv468180,nssv468200,nssv468205,nssv468116,nssv468206,nssv468153,nssv468182,nssv468103,nssv468171,nssv468165,nssv468164,nssv468155,nssv468149,nssv468126,nssv468158,nssv468202,nssv468142,nssv468112,nssv468127,nssv468140,nssv468173,nssv468110,nssv468121,nssv468187,nssv468102,nssv468170,nssv468183,nssv468111,nssv468191,nssv468129,nssv468203,nssv468169,nssv468198,nssv468181,nssv468114,nssv468105,nssv468159,nssv468177,nssv468101,nssv468124,nssv468179,nssv468144,nssv468117,nssv468178,nssv468192,nssv468146,nssv468204,nssv468193,nssv468157,nssv468201,nssv468135,nssv468134,nssv468161 M 269 0 96 Samples from several populations that are part of the HapMap project. "" NA06985,NA06991,NA06993,NA07019,NA07022,NA07055,NA07056,NA07345,NA10831,NA10835,NA10838,NA10839,NA10847,NA10851,NA10856,NA10860,NA10861,NA11829,NA11830,NA11839,NA11992,NA11993,NA11994,NA11995,NA12003,NA12004,NA12005,NA12056,NA12057,NA12146,NA12156,NA12234,NA12239,NA12248,NA12249,NA12707,NA12716,NA12717,NA12750,NA12753,NA12761,NA12762,NA12763,NA12812,NA12815,NA12873,NA12892,NA18504,NA18515,NA18523,NA18524,NA18545,NA18561,NA18571,NA18594,NA18632,NA18636,NA18637,NA18852,NA18855,NA18861,NA18871,NA18912,NA18914,NA18945,NA18947,NA18948,NA18956,NA18959,NA18961,NA18964,NA18966,NA18969,NA18975,NA18976,NA18987,NA18990,NA18992,NA18995,NA18998,NA18999,NA19005,NA19092,NA19098,NA19101,NA19103,NA19116,NA19119,NA19120,NA19127,NA19140,NA19143,NA19145,NA19152,NA19154,NA19205 nsv10454 4 9939127 9943346 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12258 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18564 nsv436934 4 9947117 9952621 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv466815 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA12865 essv24435 4 9947405 9952736 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12865 nsv461260 4 9948698 9949598 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537674 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00720 nsv520407 4 9948874 9949598 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697397 S 2026 0 1 "" nsv523893 4 9948874 9951787 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699736 S 2026 0 1 "" nsv441858 4 9949053 9951202 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv1579e1 4 9949057 9952251 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv22611,essv21482 M 271 0 0 "" NA10830,NA12154 essv3599 4 9950895 9952736 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18969 nsv829858 4 9976505 10168985 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443425,nssv1443424 M 95 1 1 "" nsv519675 4 9998454 10000204 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv657509,nssv687768 M 2026 0 2 "" dgv1580e1 4 10019968 10222069 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv20341,esv391 M 271 0 0 "" NA12236 nsv10455 4 10028055 10029941 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13034 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18517 nsv4231 4 10033026 10064647 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv370 S 9 1 0 "" NA19240 nsv4233 4 10058712 10086185 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3236 S 9 0 1 "" NA12878 nsv516573 4 10064879 10083841 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv672933,nssv691165,nssv663193,nssv688346,nssv690523,nssv667218,nssv652481,nssv666655,nssv680632,nssv693698,nssv689711,nssv689382,nssv658597,nssv686297,nssv662151,nssv675318,nssv653412,nssv693787,nssv656593,nssv684888,nssv677221,nssv687701,nssv681839,nssv662300,nssv665933,nssv661768,nssv653730,nssv652223,nssv691069,nssv681471,nssv688127,nssv681006,nssv679956,nssv661051,nssv691335,nssv652724,nssv693065,nssv670941,nssv674238,nssv687351,nssv669069,nssv693341,nssv685229,nssv683088,nssv691989,nssv662495,nssv691254,nssv665294,nssv682139,nssv683677,nssv667549,nssv676449,nssv680888,nssv662690,nssv653144,nssv673226,nssv675966,nssv663155,nssv677198,nssv684153,nssv682240,nssv663678,nssv687111,nssv688227,nssv670720,nssv688031,nssv654058,nssv670859,nssv658561,nssv676813,nssv687853,nssv659669,nssv675474,nssv659507,nssv656924,nssv676875,nssv669122,nssv666215,nssv677621,nssv654865,nssv671573,nssv651850,nssv652024,nssv673348,nssv657670,nssv663547,nssv684626,nssv682987,nssv688867,nssv676507,nssv658288,nssv673032,nssv671499,nssv684871,nssv678227,nssv656617,nssv665499,nssv686605,nssv655069,nssv661156,nssv682851,nssv670323,nssv687674,nssv688707,nssv669649,nssv685125,nssv656014,nssv654082,nssv692248,nssv658387,nssv655508,nssv671377,nssv676593,nssv661111,nssv651990,nssv674545,nssv669345,nssv661912,nssv656264,nssv666617,nssv657791,nssv663220,nssv655042,nssv674642,nssv654829,nssv672556,nssv679564,nssv659280,nssv686405,nssv686567,nssv692677,nssv676556,nssv693860,nssv677482,nssv675298,nssv682355,nssv669438,nssv690536,nssv690220,nssv671875,nssv674281,nssv677173,nssv659250,nssv655635,nssv683452,nssv653142,nssv691485,nssv672404,nssv689117,nssv674593,nssv679303,nssv662126,nssv685520,nssv669362,nssv683565,nssv686365,nssv669480,nssv657385,nssv666109,nssv669714,nssv652874,nssv691313,nssv688556,nssv683752,nssv674347,nssv660902,nssv654632,nssv692522,nssv683347,nssv688472,nssv684604,nssv685948,nssv655530,nssv668641,nssv675946,nssv665152,nssv671401,nssv688402,nssv682180,nssv677775,nssv672871,nssv674570,nssv662863,nssv665841,nssv654708,nssv673383,nssv688428,nssv692284,nssv656952,nssv687221,nssv677155,nssv689902,nssv651950,nssv685587,nssv676827,nssv661254,nssv676897,nssv652633,nssv678817,nssv673757,nssv678128,nssv692852,nssv656129,nssv670289,nssv657748,nssv684213,nssv692218,nssv675415,nssv674057,nssv691266,nssv677903,nssv673091,nssv692454,nssv658418,nssv691630,nssv681556,nssv683288,nssv685764,nssv665770,nssv664413,nssv656363,nssv703779,nssv668136,nssv683496,nssv691527,nssv661571,nssv674171,nssv681435,nssv670078,nssv686454 M 2026 0 230 "" nsv508275 4 10067156 10076109 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617486 S 4 0 1 "" CHM esv33100 4 10067289 10075662 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98907 S 51 0 1 "" 21606 nsv442894 4 10068623 10076937 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv818215 4 10073596 10075337 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415564,nssv1415563 M 112 0 2 "" NA10830,NA12236 dgv646n27 4 10073596 10076425 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv461262,nsv461263 M 1557 0 2 "" 1780862226_A,HGDP01177 nsv437911 4 10073596 10076425 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv468212,nssv468215,nssv468214,nssv468209,nssv468211,nssv468210,nssv468213,nssv468207,nssv468216 M 269 0 9 Samples from several populations that are part of the HapMap project. "" NA10846,NA10855,NA10857,NA11831,NA11832,NA11840,NA12044,NA12236,NA18971 nsv818216 4 10073596 10076425 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417242,nssv1417352,nssv1416695,nssv1416717,nssv1417487,nssv1417536,nssv1417982,nssv1417983,nssv1416706 M 112 0 9 "" NA07348,NA07357,NA10857,NA12043,NA12044,NA18577,NA18612,NA18965,NA18971 dgv647n27 4 10073596 10079107 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv461264,nsv461265,nsv461266 M 1557 0 3 "" HGDP01363,HGDP01364,HGDP01379 nsv517971 4 10075337 10569522 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695383 S 2026 1 0 "" nsv289806 4 10077234 10084162 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308384 M 24 "" nsv292792 4 10151753 10154374 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311370 M 24 "" nsv4234 4 10189690 10223589 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7924 S 9 1 0 "" NA12156 nsv525514 4 10222122 10227829 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701647 S 2026 0 1 "" nsv518387 4 10222628 10223612 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694231 S 2026 0 1 "" esv32732 4 10227149 10227578 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98836 S 51 0 1 "" 21606 nsv829860 4 10275012 10441123 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443426,nssv1443427 M 95 2 0 "" nsv527914 4 10323853 10331487 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704420 S 2026 1 0 "" nsv292167 4 10401791 10401791 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310745 M 24 "" nsv289743 4 10539940 10540405 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308321 M 24 "" nsv461267 4 10551202 10946148 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537681 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00088 nsv509880 4 10704481 10710481 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618596 S 4 0 1 "" CHM nsv829861 4 10716786 10879257 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443428 S 95 1 0 "" nsv4235 4 10729852 10755453 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2451 S 9 1 0 "" NA18555 nsv522287 4 10750697 10850054 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695069 S 2026 1 0 "" nsv507148 4 10914925 10920925 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620234 S 4 1 0 "" NA15510 nsv525832 4 10981379 11004825 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702022 S 2026 0 1 "" nsv829862 4 11082646 11272421 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443430,nssv1443431 M 95 1 1 "" nsv528730 4 11203025 11708005 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705386 S 2026 0 1 "" nsv461268 4 11224724 11295260 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537682 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00460 dgv82n17 4 11326500 11356837 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437364,nsv437363,nsv437365 M 60 0 3 "" NA18860,NA18872,NA19120 dgv1581e1 4 11337511 11348511 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv12111,essv8411,essv13405,esv1056 M 271 0 0 "" NA18872,NA19093,NA19173 nsv524768 4 11339638 11343240 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700759 S 2026 0 1 "" nsv818217 4 11339638 11343240 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418264,nssv1418263 M 112 0 2 "" NA19093,NA19094 nsv10456 4 11342619 11348669 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12831,nssv11908,nssv12539 M 31 0 3 Samples from several populations that are part of the HapMap project. "" NA18860,NA19144,NA19173 nsv517217 4 11342661 11343240 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv690107,nssv667095,nssv667754,nssv654039,nssv679597,nssv661283,nssv686185,nssv690409,nssv680776,nssv686879,nssv681130,nssv652436,nssv673685,nssv659021,nssv673488,nssv661329,nssv684653,nssv662472,nssv693108 M 2026 0 19 "" dgv1582e1 4 11342661 11346371 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv8688,essv16373 M 271 0 0 "" NA18912,NA19172 dgv1583e1 4 11342661 11348511 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv9852,essv14921,essv12925,essv11356,essv16602,essv11325,essv8895,essv15446 M 271 0 0 "" NA18858,NA18860,NA19094,NA19128,NA19129,NA19144,NA19171,NA19206 nsv507149 4 11390689 11396689 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622879,nssv621736,nssv617625 M 4 3 0 "" CHM,NA10860,NA18994 nsv829863 4 11405871 11556036 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443432 S 95 0 1 "" nsv461269 4 11420657 11466850 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537683 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01172 nsv521641 4 11612673 11632989 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698259 S 2026 1 0 "" nsv525492 4 11632989 11679320 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701623 S 2026 0 1 "" nsv515754 4 11830482 11846216 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv679830,nssv664689,nssv670324 M 2026 0 3 "" nsv527745 4 11850931 11888906 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704231 S 2026 0 1 "" nsv818218 4 11932694 11969840 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417850 S 112 1 0 "" NA18852 dgv648n27 4 12037471 12060216 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv461273,nsv461274,nsv461275,nsv461271,nsv461270 M 1557 0 5 "" HGDP00724,HGDP00914,HGDP00940,HGDP01035,HGDP01271 nsv437366 4 12040608 12062839 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467247 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18863 nsv10457 4 12041581 12068800 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11900 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18853 nsv515588 4 12041732 12060216 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv663307,nssv671447,nssv680399,nssv679323,nssv665805,nssv667921,nssv655948,nssv662473,nssv664009,nssv664125,nssv656518,nssv686721,nssv685966,nssv662362,nssv680437,nssv678896,nssv656826,nssv656862,nssv676939,nssv676489,nssv673438,nssv664089,nssv687617,nssv669161,nssv686231,nssv654963,nssv685101,nssv680861,nssv685462,nssv661284 M 2026 0 30 "" nsv818219 4 12050855 12060216 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417851,nssv1417852 M 112 0 2 "" NA18853,NA18854 nsv437912 4 12051326 12060216 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv468221,nssv468218,nssv468217,nssv468220 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA18861,NA18863 nsv442895 4 12053882 12055524 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv1584e1 4 12173444 12335659 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv411,essv23957 M 271 0 0 "" NA12814 nsv829864 4 12205827 12320850 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443433,nssv1443434 M 95 1 1 "" nsv461276 4 12264363 12281647 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537690 S 1557 0 1 "" NINDS_114 nsv521124 4 12264363 12281647 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv687352,nssv682661 M 2026 0 2 "" nsv292078 4 12326197 12326800 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310656 M 24 "" nsv10458 4 12337966 12355409 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12241 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19240 nsv507150 4 12389123 12395123 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621737,nssv620235 M 4 2 0 "" NA10860,NA15510 nsv829865 4 12418999 12566780 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443436,nssv1443435 M 95 0 2 "" nsv4236 4 12734822 12767184 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2452 S 9 1 0 "" NA18555 nsv4237 4 12762713 12781293 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7925 S 9 0 1 "" NA12156 nsv515687 4 12775151 12776085 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv692192,nssv664396 M 2026 0 2 "" nsv829866 4 12900432 13101607 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443437 S 95 0 1 "" dgv1585e1 4 12928417 12968570 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1149,essv5673 M 271 0 0 "" NA18605 nsv525924 4 12932167 12933931 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702128 S 2026 0 1 "" nsv4238 4 13006299 13039678 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7926 S 9 1 0 "" NA12156 nsv4239 4 13242229 13300291 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv371,nssv4728 M 9 2 0 "" NA19129,NA19240 nsv4240 4 13391078 13397443 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9638 S 9 1 0 "" NA18507 nsv4241 4 13664793 13713426 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7068,nssv3237 M 9 2 0 "" NA12156,NA12878 nsv829867 4 13677314 13839237 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443439,nssv1443444,nssv1443438,nssv1443443,nssv1443442,nssv1443441,nssv1443446,nssv1443445 M 95 4 4 "" nsv7359 4 13728848 13751476 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4729 S 9 0 0 "" NA19129 nsv526873 4 13858733 13859473 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703231 S 2026 1 0 "" nsv291865 4 13882594 13882669 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310443 M 24 "" nsv4242 4 13897825 13901263 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7928 S 9 1 0 "" NA12156 nsv518829 4 13912281 13918301 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696283 S 2026 0 1 "" nsv292324 4 14067428 14067613 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310902 M 24 "" nsv517439 4 14093773 14107656 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv652026,nssv673169 M 2026 0 2 "" nsv527915 4 14170002 14428854 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704421 S 2026 1 0 "" nsv526875 4 14286657 14286718 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703233 S 2026 1 0 "" nsv290927 4 14404182 14404182 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309505 M 24 "" nsv518501 4 14447388 14520674 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695941 S 2026 0 1 "" dgv136n6 4 14464868 14464976 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv293754,nsv291498 M 24 "" nsv528647 4 14579874 14583204 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705279 S 2026 0 1 "" nsv508998 4 14599759 14602268 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620784,nssv623408 M 4 2 0 "" NA15510,NA18994 nsv4244 4 14623535 14655357 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4731,nssv373 M 9 2 0 "" NA19129,NA19240 nsv508999 4 14628169 14641407 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623409,nssv620785 M 4 2 0 "" NA15510,NA18994 nsv292436 4 14633171 14633171 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311014 M 24 "" nsv461280 4 14638765 14757643 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537691 S 1557 0 1 "" 1782681169_A nsv829868 4 14640828 14840975 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443447 S 95 1 0 "" nsv518661 4 14722165 14726995 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696111 S 2026 0 1 "" nsv517324 4 14772792 14782305 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv689315,nssv695781,nssv687729,nssv686882,nssv687619,nssv681669,nssv667128,nssv668019,nssv678870,nssv651722,nssv685823,nssv656519,nssv672744,nssv680308 M 2026 0 14 "" nsv518019 4 14778185 14795248 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694060 S 2026 0 1 "" nsv510888 4 14848503 14963322 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621570 S 4 0 0 "" NA15510 nsv507151 4 14855796 14861796 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621738,nssv617626,nssv622880 M 4 3 0 "" CHM,NA10860,NA18994 nsv290191 4 14890625 14890700 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308769 M 24 "" nsv290793 4 14890670 14890743 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309371 M 24 "" nsv507152 4 14948907 14954907 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621739,nssv622881 M 4 2 0 "" NA10860,NA18994 dgv1586e1 4 15120886 15425789 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv4384,esv120,essv19179,essv22666 M 271 0 0 "" NA12752,NA12865,NA18573 dgv1587e1 4 15233230 15425789 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv14113,essv14397,essv3019,essv16088,essv11856,essv656,essv1851,essv2824,essv17635,essv18588,essv19777,essv16766,essv7021,essv3993,essv22056,essv10354,essv22175,essv7321,essv8273,essv7392,essv14580,essv7850,essv8880,essv12455,essv13178,essv20160,essv7591,essv16436,essv24722,essv4150,essv7739,essv22971,essv16821,essv1245,essv15411,essv24754,essv2634,essv11120,essv14779,essv9414,essv22318,essv6001,essv1418,essv20898,essv5092,essv8632,essv10793,essv5155,essv23676,essv5791,essv5019,essv14362,essv13807,essv22898,essv21696,essv13711,essv22774,essv21962,essv17055,essv4093,essv16670,essv8950,essv6237,essv8173,essv4960,essv13074,essv20366,essv9384,essv13453,essv24516,essv13925,essv10624,essv11585,essv23057,essv19285,essv9090,essv21032,essv19968,essv8376,essv24563,essv12982,essv7691,essv9109,essv16282,essv21455,essv23882,essv17733,essv18150,essv19574,essv10817,essv5386,essv10416,essv18377,essv6686,essv15691,essv6967,essv21220,essv18772,essv12748,essv21772,essv2341,essv15223,essv21317,essv19421,essv20635,essv2081,essv19007,essv1197,essv10036,essv7111,essv6364,essv2871,essv6823,essv3272,essv13557,essv2217,essv3745,essv23460,essv20597,essv14853,essv3530,essv2301,essv11779,essv15519,essv109,essv3131,essv16055,essv15131,essv4755,essv24467 M 271 0 0 "" NA06985,NA06991,NA07019,NA07034,NA07056,NA07357,NA10830,NA10835,NA10838,NA10857,NA10860,NA10863,NA11829,NA11830,NA11832,NA11840,NA11992,NA11993,NA11995,NA12005,NA12056,NA12154,NA12234,NA12239,NA12248,NA12249,NA12717,NA12753,NA12760,NA12801,NA12802,NA12812,NA12813,NA12814,NA12864,NA12872,NA12874,NA12878,NA12892,NA18501,NA18504,NA18505,NA18506,NA18507,NA18508,NA18522,NA18523,NA18537,NA18542,NA18545,NA18555,NA18558,NA18563,NA18564,NA18566,NA18570,NA18571,NA18576,NA18577,NA18579,NA18582,NA18608,NA18609,NA18612,NA18620,NA18623,NA18633,NA18635,NA18636,NA18637,NA18852,NA18853,NA18854,NA18855,NA18858,NA18859,NA18860,NA18861,NA18871,NA18872,NA18912,NA18914,NA18940,NA18944,NA18949,NA18951,NA18953,NA18960,NA18961,NA18965,NA18966,NA18967,NA18968,NA18969,NA18970,NA18972,NA18975,NA18976,NA18981,NA18987,NA18995,NA19094,NA19099,NA19100,NA19102,NA19103,NA19119,NA19129,NA19132,NA19139,NA19142,NA19153,NA19159,NA19160,NA19161,NA19172,NA19173,NA19192,NA19194,NA19200,NA19202,NA19203,NA19205,NA19206,NA19207,NA19208,NA19211,NA19221,NA19222,NA19239 dgv315n21 4 15287040 15368405 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv521183,nsv518830 M 2026 0 2 "" nsv292453 4 15314569 15316399 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311031 M 24 "" nsv10459 4 15397612 15400851 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13063,nssv11938 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18504,NA19144 nsv10460 4 15433880 15494475 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12569,nssv12942 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18502,NA19173 nsv441859 4 15436340 15444736 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv516315 4 15436756 15444021 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv678897,nssv667530,nssv675509,nssv680750 M 2026 0 4 "" nsv527861 4 15526255 16619259 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704359 S 2026 1 0 "" nsv293033 4 15570247 15570296 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311611 M 24 "" nsv4245 4 15578047 15585002 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3238 S 9 1 0 "" NA12878 nsv526159 4 15619071 15619409 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702418 S 2026 0 1 "" nsv461281 4 15660302 15677647 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537692 S 1557 0 1 "" 1782681275_A nsv527202 4 15677647 15678557 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703602 S 2026 0 1 "" nsv4246 4 15860790 15895465 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3240 S 9 1 0 "" NA12878 nsv289848 4 16001520 16001639 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308426 M 24 "" nsv517721 4 16026808 16042117 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv674173,nssv666795,nssv699703,nssv705297,nssv652983,nssv668111 M 2026 0 6 "" nsv518102 4 16062718 16086563 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695515 S 2026 1 0 "" nsv4247 4 16284701 16289364 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4732 S 9 1 0 "" NA19129 nsv4248 4 16330200 16347930 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7929 S 9 0 1 "" NA12156 nsv4249 4 16441332 16473732 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7069 S 9 1 0 "" NA12156 nsv291652 4 16488387 16488548 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310230 M 24 "" nsv292768 4 16575789 16575838 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311346 M 24 "" nsv293129 4 16575815 16575866 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311707 M 24 "" nsv4250 4 16612305 16629060 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10398 S 9 0 1 "" NA18956 nsv4251 4 16666211 16700869 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv374 S 9 1 0 "" NA19240 nsv441860 4 16712459 16715643 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv525009 4 16717956 16721029 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701046 S 2026 0 1 "" nsv4252 4 16726387 16758958 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2454 S 9 1 0 "" NA18555 nsv289305 4 16879035 16879344 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv307883 M 24 "" nsv4253 4 16918735 16927153 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7930 S 9 0 1 "" NA12156 nsv522912 4 17055852 17061820 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698571 S 2026 0 1 "" nsv4255 4 17118021 17153632 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7931 S 9 0 1 "" NA12156 nsv291198 4 17137393 17137838 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309776 M 24 "" nsv292990 4 17137432 17137527 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311568 M 24 "" nsv293523 4 17141122 17143582 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv312101 M 24 "" dgv1588e1 4 17211513 17264589 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv6789,esv937 M 271 0 0 "" NA18594 nsv289804 4 17251642 17258057 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308382 M 24 "" nsv291964 4 17255142 17255142 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310542 M 24 "" nsv527339 4 17391969 17392060 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703765 S 2026 0 1 "" nsv289646 4 17417464 17420060 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308224 M 24 "" nsv4256 4 17742620 17776771 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7932 S 9 1 0 "" NA12156 nsv4257 4 17809919 17854635 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2455 S 9 0 1 "" NA18555 nsv523781 4 17956830 17966239 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699606 S 2026 0 1 "" nsv4258 4 18420382 18453551 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7933 S 9 1 0 "" NA12156 nsv292463 4 18430845 18431063 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311041 M 24 "" nsv4259 4 18628656 18663175 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3241 S 9 1 0 "" NA12878 nsv461282 4 18711877 18981215 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537693 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00161 nsv508276 4 18731253 18794802 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619934,nssv622480,nssv617487,nssv618735 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv4260 4 18743035 18797255 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9639,nssv7070,nssv4733,nssv2456,nssv375 M 9 0 5 "" NA12156,NA18507,NA18555,NA19129,NA19240 dgv1589e1 4 18763789 18863091 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv905,essv4109,essv2393 M 271 0 0 "" NA18529,NA18976 nsv441861 4 18764828 18800502 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv818220 4 18768426 18798711 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417598,nssv1417087 M 112 0 2 "" NA18529,NA18978 nsv527519 4 18772432 18836696 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703973 S 2026 0 1 "" essv2154 4 18772432 18840742 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18978 esv35057 4 18776398 18800501 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6979339,essv6988156 M 771 0 1 "" NA18529 nsv829869 4 18804551 18986733 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443448,nssv1443449 M 95 2 0 "" nsv292215 4 18806876 18806950 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310793 M 24 "" nsv291045 4 18806901 18806950 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309623 M 24 "" nsv4261 4 18870982 18916113 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7934 S 9 0 1 "" NA12156 nsv293485 4 18904311 18904484 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv312063 M 24 "" nsv4262 4 18916705 18960931 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2457 S 9 0 1 "" NA18555 nsv829872 4 18944551 19109141 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443450,nssv1443452 M 95 0 2 "" nsv525057 4 18982980 18986621 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701106 S 2026 0 1 "" nsv829873 4 19258532 19418784 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443453 S 95 1 0 "" nsv518929 4 19292918 19305578 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696395 S 2026 0 1 "" nsv523420 4 19305322 19305578 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699173 S 2026 0 1 "" nsv829874 4 19311482 19457371 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443454 S 95 0 1 "" nsv290637 4 19319395 19319735 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309215 M 24 "" nsv510917 4 19421651 19605677 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621571 S 4 0 0 "" NA15510 esv2752044 4 19464532 19803073 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6984038,essv6984039,essv6989902 M 771 0 1 "" BEC_758 nsv461287 4 19938055 19968508 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537696 S 1557 0 1 "" 1780862042_A nsv527095 4 20123309 20132224 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703474 S 2026 1 0 "" nsv829875 4 20179164 20357225 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443460,nssv1443479,nssv1443458,nssv1443457,nssv1443456,nssv1443461,nssv1443468,nssv1443464,nssv1443463,nssv1443459,nssv1443467,nssv1443465,nssv1443466,nssv1443478,nssv1443472,nssv1443470,nssv1443476,nssv1443475,nssv1443474,nssv1443477,nssv1443471,nssv1443483,nssv1443480,nssv1443455,nssv1443482,nssv1443481,nssv1443469 M 95 9 18 "" nsv292967 4 20212602 20212602 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311545 M 24 "" nsv516999 4 20225245 20242130 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv657103,nssv680521,nssv653193,nssv658193,nssv675267,nssv674911,nssv665807,nssv680751,nssv655949,nssv669390,nssv675568,nssv653061,nssv686845,nssv653579,nssv671302,nssv679807,nssv664167,nssv658769,nssv678898,nssv658262 M 2026 0 20 "" nsv442896 4 20232980 20240211 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv818221 4 20233728 20242130 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416721,nssv1416719,nssv1416720 M 112 0 3 "" NA19159,NA19160,NA19161 nsv437913 4 20238349 20239377 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv468222 S 269 0 1 Samples from several populations that are part of the HapMap project. "" NA19161 nsv4263 4 20268454 20303779 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv376 S 9 1 0 "" NA19240 nsv829876 4 20315005 20511890 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443485 S 95 1 0 "" nsv829877 4 20523734 20668813 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443486 S 95 1 0 "" nsv829878 4 20642316 20814895 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443487 S 95 0 1 "" nsv522328 4 20759822 20773096 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695109 S 2026 0 1 "" nsv525552 4 20791785 20793603 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701690 S 2026 1 0 "" nsv4264 4 20814400 20875531 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4734,nssv7071,nssv9389,nssv3242 M 9 0 4 "" NA12156,NA12878,NA18517,NA19129 nsv293542 4 20837272 20843382 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv312120 M 24 "" dgv1590e1 4 20848734 20857264 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1059,essv14029 M 271 0 0 "" NA18862 nsv471806 4 20856343 20856566 CNV Loss Hinds et al 2006 16327809 Oligo_aCGH,PCR Custom Perlegen arrays nssv646087 M 0.085 95 "" nsv292176 4 20942070 20942070 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310754 M 24 "" nsv437914 4 20968482 21052086 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv468227,nssv468232,nssv468240,nssv468234,nssv468224,nssv468223,nssv468228,nssv468229,nssv468233,nssv468231,nssv468225,nssv468235,nssv468244,nssv468226,nssv468239,nssv468243,nssv468237,nssv468238,nssv468236,nssv468242 M 269 0 19 Samples from several populations that are part of the HapMap project. "" NA18506,NA18508,NA18854,NA18855,NA18913,NA19092,NA19094,NA19103,NA19119,NA19143,NA19144,NA19145,NA19159,NA19192,NA19201,NA19205,NA19210,NA19222,NA19238 nsv521126 4 21011632 21027739 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv683472,nssv683932,nssv682662 M 2026 0 3 "" nsv4266 4 21024273 21058628 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3125 S 9 1 0 "" NA18555 nsv4267 4 21041096 21057901 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv377,nssv10399 M 9 0 2 "" NA18956,NA19240 nsv10462 4 21045231 21053950 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13920,nssv12957,nssv11968,nssv13123,nssv12174,nssv12972,nssv11906,nssv12271,nssv11930 M 31 0 9 Samples from several populations that are part of the HapMap project. "" NA18502,NA18504,NA18853,NA18975,NA19007,NA19132,NA19144,NA19221,NA19240 nsv442897 4 21048308 21053120 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv829879 4 21094837 21287271 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443488 S 95 1 0 "" nsv518367 4 21125049 21137390 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695793 S 2026 0 1 "" nsv527163 4 21166630 21171250 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703557 S 2026 0 1 "" nsv829880 4 21168695 21370085 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443489 S 95 1 0 "" nsv527678 4 21170963 21171250 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704153 S 2026 0 1 "" nsv525271 4 21195846 21251892 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701372 S 2026 0 1 "" nsv291793 4 21197624 21197674 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310371 M 24 "" nsv461288 4 21238282 21251892 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537697 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01411 nsv4268 4 21252875 21275929 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3243 S 9 1 0 "" NA12878 nsv461289 4 21264567 21315785 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537698 S 1557 1 0 "" NINDS_130 dgv137n6 4 21434992 21435103 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv289639,nsv292343 M 24 "" nsv292113 4 21435062 21435153 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310691 M 24 "" nsv4269 4 21437698 21482325 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7936 S 9 0 1 "" NA12156 nsv507153 4 21492083 21498083 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622882,nssv620237 M 4 2 0 "" NA15510,NA18994 nsv291226 4 21509578 21515424 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309804 M 24 "" dgv1591e1 4 21549473 21656828 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv230,essv16311 M 271 0 0 "" NA19193 nsv10463 4 21617895 21620427 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12243,nssv12301 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA07048,NA19240 nsv4270 4 21622731 21629271 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3244 S 9 1 0 "" NA12878 dgv1592e1 4 21687850 21906987 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv7861,esv621,essv20400,essv22585,essv13422,essv6217,essv23044,essv7707,essv10836,essv15644,essv5482,essv24129,essv12649,essv23582 M 271 0 0 "" NA07348,NA10830,NA10847,NA12006,NA12812,NA18500,NA18558,NA18632,NA18633,NA18636,NA18871,NA18912,NA19192 essv21622 4 21693436 21767251 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA07348 nsv10464 4 21723295 21731233 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12273 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA07048 nsv441862 4 21724902 21746970 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" essv20738 4 21725939 21762463 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA07357 nsv818224 4 21728213 21745648 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417984,nssv1417985 M 112 0 2 "" NA07348,NA07357 nsv517719 4 21728213 21750037 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv674644,nssv685341,nssv665083,nssv686606,nssv682039,nssv674880,nssv677496,nssv652969,nssv674461,nssv674130,nssv666373,nssv692361,nssv674615,nssv672474,nssv675007,nssv692334,nssv658179,nssv667851,nssv655431,nssv676829,nssv668996 M 2026 0 21 "" nsv829881 4 21760973 21930948 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443490 S 95 0 1 "" nsv4271 4 21959264 22002601 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3245,nssv7937 M 9 2 0 "" NA12156,NA12878 nsv510889 4 22021625 22099538 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621572 S 4 0 0 "" NA15510 nsv507154 4 22047622 22053622 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617627 S 4 1 0 "" CHM nsv509881 4 22087645 22093645 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618597,nssv622048,nssv623934 M 4 0 3 "" CHM,NA10860,NA18994 nsv821634 4 22103343 22542217 CNV Loss Sebat_et_al_2004 15273396 ROMA Custom Nimblegen photoprint 85000 probe ROMA oligo array nssv1421358 S 31 0 1 "" nsv289612 4 22178335 22178432 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308190 M 24 "" nsv10465 4 22338950 22343949 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11960,nssv13950 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18853,NA19221 nsv520260 4 22341036 22342324 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv690410,nssv687595,nssv662209,nssv686646 M 2026 0 4 "" nsv829883 4 22342595 22518786 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443494,nssv1443493,nssv1443498,nssv1443497,nssv1443496,nssv1443492,nssv1443491 M 95 0 7 "" nsv4272 4 22429956 22463084 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv378 S 9 1 0 "" NA19240 nsv520813 4 22459983 22500290 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698823,nssv683091,nssv675706 M 2026 0 3 "" nsv829884 4 22541982 22707504 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443499,nssv1443500,nssv1443501 M 95 0 3 "" nsv522138 4 22555173 22678283 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694912 S 2026 1 0 "" nsv829885 4 22727498 22772766 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443502 S 95 0 1 "" nsv292599 4 22776915 22776974 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311177 M 24 "" nsv289468 4 22805885 22808087 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308046 M 24 "" nsv507155 4 22904287 22910287 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622883,nssv620238,nssv621740 M 4 3 0 "" NA10860,NA15510,NA18994 nsv293499 4 22945636 22949341 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv312077 M 24 "" dgv1593e1 4 22951435 22990481 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv8393,esv1039 M 271 0 0 "" NA19093 nsv442898 4 22951468 22956389 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" essv745 4 23123935 23156009 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19003 dgv1594e1 4 23123935 23166081 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2936,esv1368 M 271 0 0 "" NA19007 nsv829886 4 23129020 23308215 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443503 S 95 0 1 "" nsv4273 4 23312420 23346787 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3246 S 9 1 0 "" NA12878 nsv517733 4 23314368 23407156 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv677877,nssv682000,nssv653039,nssv656983 M 2026 4 0 "" nsv461291 4 23329485 23389099 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537699 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00943 dgv138n6 4 23397934 23398273 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv291163,nsv292232 M 24 "" nsv290453 4 23522766 23522766 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309031 M 24 "" nsv528101 4 23739566 23743415 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704641 S 2026 0 1 "" nsv4274 4 23796675 23830015 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2458 S 9 1 0 "" NA18555 nsv4275 4 23851789 23861557 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7938 S 9 0 1 "" NA12156 nsv289370 4 23878419 23878547 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv307948 M 24 "" nsv289788 4 24251950 24252097 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308366 M 24 "" nsv525569 4 24323041 24372752 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701708 S 2026 1 0 "" nsv829887 4 24449814 24678357 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443504,nssv1443505 M 95 1 1 "" nsv829888 4 24555294 24747367 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443507 S 95 1 0 "" nsv4277 4 24805589 24850621 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7939 S 9 0 1 "" NA12156 nsv518834 4 24939747 24970488 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696286 S 2026 0 1 "" nsv524925 4 24955257 24972273 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700938 S 2026 0 1 "" nsv509000 4 25092321 25226299 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620786,nssv623410 M 4 2 0 "" NA15510,NA18994 nsv10466 4 25177648 25183007 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12861 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18860 nsv441863 4 25178322 25184279 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv1595e1 4 25178326 25184127 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv16585,esv1298 M 271 0 0 "" NA18860 nsv517048 4 25230601 25259500 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv670403,nssv664880,nssv673930,nssv656102,nssv668997,nssv676616,nssv653003,nssv692411,nssv685272,nssv680823,nssv669890,nssv674058,nssv653687,nssv689543,nssv651871,nssv669906,nssv663156,nssv693040,nssv668055,nssv686406 M 2026 20 0 "" dgv649n27 4 25230780 25254782 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv461304,nsv461308,nsv461292,nsv461303,nsv461301,nsv461293,nsv461294,nsv461299,nsv461310,nsv461302,nsv461296,nsv461300,nsv461309,nsv461297,nsv461305,nsv461298,nsv461307 M 1557 17 0 "" 1780854518_A,1780862575_A,1780862577_A,1782681110_A,HGDP00011,HGDP00023,HGDP00035,HGDP00125,HGDP00144,HGDP00154,HGDP00205,HGDP00226,HGDP00602,HGDP00740,HGDP01153,HGDP01385,NINDS_95 nsv526729 4 25321434 25384210 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703070 S 2026 0 1 "" nsv292131 4 25326131 25326184 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310709 M 24 "" nsv507156 4 25350672 25356672 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622884,nssv620239,nssv621741 M 4 3 0 "" NA10860,NA15510,NA18994 essv2551 4 25382090 25406815 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18974 dgv1596e1 4 25382090 25416475 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1544,esv1096,essv3674 M 271 0 0 "" NA18943,NA19012 nsv441864 4 25390495 25407145 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv515725 4 25646432 25660334 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv679881,nssv688892,nssv664581 M 2026 0 3 "" nsv290552 4 25751526 25756443 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309130 M 24 "" nsv829889 4 25846223 26014582 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443515,nssv1443513,nssv1443514,nssv1443516,nssv1443519,nssv1443524,nssv1443523,nssv1443521,nssv1443520,nssv1443512,nssv1443522,nssv1443511,nssv1443509,nssv1443508,nssv1443510 M 95 0 15 "" nsv4278 4 25874096 25903395 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv379 S 9 1 0 "" NA19240 nsv519405 4 25960741 25968824 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv655995,nssv683727,nssv684737 M 2026 3 0 "" nsv509882 4 25962784 25968784 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618598 S 4 0 1 "" CHM nsv10467 4 26118533 26131051 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13153 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18504 nsv515501 4 26122275 26133437 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv657507,nssv695006,nssv658937,nssv693386,nssv700606,nssv653344,nssv686846,nssv680721,nssv655736 M 2026 0 9 "" nsv10468 4 26130148 26139226 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12204 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18975 dgv1597e1 4 26132536 26138154 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1059,esv1152 M 271 0 0 "" NA18975 nsv527142 4 26204959 26206448 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703530 S 2026 0 1 "" nsv522423 4 26301454 26382611 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705776 S 2026 1 0 "" nsv524115 4 26307447 26382611 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699993 S 2026 0 1 "" nsv521924 4 26519763 26520943 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694694 S 2026 0 1 "" nsv461312 4 26520943 26754645 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537719 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00376 dgv139n6 4 26632221 26633726 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv293653,nsv290050 M 24 "" nsv4279 4 26732641 26778043 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7072 S 9 0 1 "" NA12156 nsv4280 4 26801078 26846119 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7940 S 9 0 1 "" NA12156 nsv507157 4 26813605 26819605 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617628 S 4 1 0 "" CHM nsv293529 4 26884273 26884273 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv312107 M 24 "" nsv829890 4 26911925 27032294 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443525,nssv1443527,nssv1443526,nssv1443528 M 95 4 0 "" dgv79n68 4 27171895 27339327 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH nsv829891,nsv829892 M 95 2 0 "" nsv291027 4 27303808 27303857 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309605 M 24 "" nsv527692 4 27337914 27338378 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704168 S 2026 0 1 "" nsv290090 4 27510705 27510758 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308668 M 24 "" nsv4281 4 27532250 27564625 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2459 S 9 1 0 "" NA18555 nsv522202 4 27586912 27593298 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694975 S 2026 0 1 "" nsv4282 4 27590924 27635743 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7941 S 9 0 1 "" NA12156 nsv292150 4 27608186 27612600 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310728 M 24 "" nsv291085 4 27625954 27625954 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309663 M 24 "" dgv1598e1 4 27909573 27914267 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv19046,esv997 M 271 0 0 "" NA07034 nsv293683 4 28097860 28098209 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv312261 M 24 "" dgv1599e1 4 28220227 28515706 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv674,essv1942 M 271 0 0 "" NA18959 nsv10469 4 28258088 28261884 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12331,nssv12987 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA19132,NA19240 nsv829894 4 28263592 28417109 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443532 S 95 1 0 "" nsv461313 4 28268423 28337795 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537720 S 1557 0 1 "" 1780862109_A essv2104 4 28308476 28399097 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18959 dgv184e55 4 28308476 28431246 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv34271,esv34764 M 771 0 2 "" NA18956,NA18959 essv3422 4 28308476 28445387 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18956 nsv433218 4 28317331 28408750 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463099 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA18956 nsv441865 4 28318602 28407093 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv509883 4 28352146 28358146 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623935 S 4 0 1 "" NA18994 nsv509884 4 28370553 28376553 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618154,nssv621223,nssv623936 M 4 0 3 "" CHM,NA15510,NA18994 nsv437367 4 28616412 28639197 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467248 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19240 nsv10470 4 28619577 28629917 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12361 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19240 nsv441866 4 28620308 28628750 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv517672 4 28621477 28625019 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv677497,nssv652781,nssv686935,nssv654646,nssv652844,nssv664436,nssv677537,nssv664090,nssv680889 M 2026 0 9 "" nsv289446 4 28673748 28673803 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308024 M 24 "" dgv1600e1 4 28800351 28817794 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1373,essv6494 M 271 0 0 "" NA18636 nsv829895 4 28836069 28990236 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443533,nssv1443534 M 95 2 0 "" dgv316n21 4 28844261 29022245 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv523421,nsv518930 M 2026 2 0 "" nsv524159 4 28888809 28923993 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700038 S 2026 0 1 "" nsv4283 4 28893270 28919375 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv380 S 9 0 1 "" NA19240 nsv10471 4 28902652 28918213 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11935,nssv12391,nssv13017 M 31 0 3 Samples from several populations that are part of the HapMap project. "" NA18980,NA19132,NA19240 nsv441867 4 28962673 28974422 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv10473 4 28984127 28986458 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12599 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19173 nsv10474 4 28986458 28994639 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11936 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19007 dgv1601e1 4 28986666 29007386 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2906,esv1052 M 271 0 0 "" NA19007 nsv292204 4 29105062 29112039 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310782 M 24 "" dgv1602e1 4 29199911 29367346 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv481,essv2539 M 271 0 0 "" NA19003 nsv507158 4 29207860 29213860 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622885,nssv621742 M 4 2 0 "" NA10860,NA18994 nsv293810 4 29337392 29337719 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv312388 M 24 "" nsv293426 4 29391548 29391633 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv312004 M 24 "" nsv526877 4 29428568 29431780 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703235 S 2026 1 0 "" nsv509885 4 29437757 29443757 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623937 S 4 0 1 "" NA18994 nsv524516 4 29588577 29591167 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700461 S 2026 0 1 "" nsv528735 4 29674730 29680766 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705391 S 2026 0 1 "" dgv1603e1 4 29805053 29963713 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv5,essv24239 M 271 0 0 "" NA10856 dgv317n21 4 29818926 29824049 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv528409,nsv517529 M 2026 0 14 "" nsv523112 4 29821089 29824049 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698811 S 2026 0 1 "" nsv510919 4 29855447 29876174 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621573 S 4 0 0 "" NA15510 nsv507159 4 29933419 29939419 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620240,nssv622886 M 4 2 0 "" NA15510,NA18994 nsv10475 4 29962071 29968461 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13002 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18502 nsv461315 4 30024322 30334804 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537721 S 1557 0 1 "" 1780862250_A nsv509001 4 30200095 30220693 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620787,nssv618025 M 4 2 0 "" CHM,NA15510 nsv522200 4 30200377 30213048 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694973 S 2026 0 1 "" nsv4284 4 30228201 30259950 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10400 S 9 1 0 "" NA18956 nsv290955 4 30282955 30282955 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309533 M 24 "" nsv526636 4 30373067 30379512 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702958 S 2026 0 1 "" nsv4285 4 30491911 30515053 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10401 S 9 0 1 "" NA18956 nsv4286 4 30494354 30527752 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7942 S 9 1 0 "" NA12156 nsv4288 4 30531808 30565653 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7943 S 9 1 0 "" NA12156 nsv289917 4 30652138 30652138 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308495 M 24 "" nsv461316 4 30661397 32125150 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537722 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01336 nsv289500 4 30746208 30752675 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308078 M 24 "" nsv290639 4 30827735 30828256 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309217 M 24 "" nsv293773 4 30882085 30882403 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv312351 M 24 "" nsv525010 4 30922649 30926975 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701047 S 2026 0 1 "" nsv292557 4 31014762 31014960 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311135 M 24 "" nsv289526 4 31031443 31031530 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308104 M 24 "" dgv318n21 4 31035245 31037058 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv522740,nsv528389 M 2026 0 2 "" nsv818225 4 31063793 31073887 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418058,nssv1418443 M 112 0 2 "" NA10859,NA19193 nsv290342 4 31169137 31169572 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308920 M 24 "" nsv4289 4 31228041 31262450 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3247 S 9 1 0 "" NA12878 dgv1604e1 4 31291394 31478210 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv229,essv10674 M 271 0 0 "" NA18855 nsv461318 4 31430716 31484966 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537723 S 1557 0 1 "" NINDS_147 nsv829896 4 31647111 31807635 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443535 S 95 0 1 "" nsv507160 4 31684531 31690531 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622887 S 4 1 0 "" NA18994 nsv527507 4 31699425 31701039 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703960 S 2026 0 1 "" nsv527508 4 31710923 31720745 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703961 S 2026 1 0 "" nsv518860 4 31795508 31796717 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696315 S 2026 0 1 "" nsv289822 4 31855947 31864584 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308400 M 24 "" nsv461319 4 31944230 32055066 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537724 S 1557 0 1 "" NINDS_194 nsv437916 4 32088512 32094967 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv468246,nssv468245 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA18945,NA18949 nsv527190 4 32103456 32106732 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703587 S 2026 0 1 "" nsv523506 4 32108486 32113443 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699277 S 2026 0 1 "" dgv1605e1 4 32190399 32361018 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv215,essv10698 M 271 0 0 "" NA18855 nsv442899 4 32269069 32272867 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv524710 4 32291189 32384176 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700695 S 2026 1 0 "" dgv140n6 4 32330670 32330999 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv290432,nsv290835 M 24 "" nsv525305 4 32407511 32407618 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701412 S 2026 0 1 "" nsv829897 4 32443522 32585772 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443536 S 95 0 1 "" nsv525914 4 32678114 32729799 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702118 S 2026 0 1 "" nsv4290 4 32752286 32796957 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7944 S 9 0 1 "" NA12156 nsv829898 4 32810258 32986535 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443537,nssv1443538 M 95 1 1 "" nsv523344 4 32847612 33201309 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699093 S 2026 0 1 "" nsv4291 4 32904330 32948840 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4670 S 9 0 1 "" NA19129 nsv520670 4 33122529 33126579 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv690612,nssv673759,nssv687566 M 2026 0 3 "" nsv291392 4 33149433 33149433 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309970 M 24 "" dgv83n17 4 33183778 33220671 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437371,nsv437370 M 60 0 2 "" NA18857,NA19211 nsv461321 4 33187312 33228899 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537725 S 1557 0 1 "" NINDS_125 nsv818226 4 33194487 33201309 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416432,nssv1416431 M 112 0 2 "" NA18515,NA18516 nsv10476 4 33200322 33202073 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11465,nssv11998,nssv12288 M 31 3 0 Samples from several populations that are part of the HapMap project. "" NA10847,NA18564,NA19144 nsv517147 4 33200798 33201309 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv659723,nssv664791,nssv660600,nssv686723,nssv679733,nssv659539,nssv671553,nssv688210,nssv693915,nssv671303,nssv690411,nssv680356,nssv693943,nssv689047,nssv666082,nssv692475,nssv656676,nssv688936,nssv662153,nssv689341,nssv655386,nssv672902,nssv684721,nssv676998,nssv662935,nssv653868,nssv689293,nssv685464,nssv653214,nssv661285,nssv673491,nssv662210,nssv665808 M 2026 0 33 "" nsv442900 4 33201702 33208752 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv509886 4 33264825 33270825 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621224 S 4 0 1 "" NA15510 nsv4292 4 33289447 33303000 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3248 S 9 1 0 "" NA12878 nsv829899 4 33924454 34128074 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443543,nssv1443542,nssv1443539,nssv1443541 M 95 4 0 "" nsv461322 4 33949504 34094368 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537726 S 1557 0 1 "" NINDS_189 nsv461325 4 33965690 34053621 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537727 S 1557 0 1 "" 1780854459_A dgv1606e1 4 33971807 34297097 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv14301,esv806,essv9003 M 271 0 0 "" NA19194 nsv4293 4 34066196 34101189 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv381 S 9 1 0 "" NA19240 nsv523118 4 34155842 34163618 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698818 S 2026 0 1 "" dgv185e55 4 34158600 34226600 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv35025,esv35027 M 771 2 0 "" NA19192,NA19194 essv11408 4 34158636 34235432 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19192 nsv10477 4 34174211 34181062 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13183,nssv12028,nssv12891,nssv13980 M 31 0 4 Samples from several populations that are part of the HapMap project. "" NA18504,NA18860,NA19144,NA19221 nsv10478 4 34261316 34275598 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13032 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18502 nsv10479 4 34306679 34316092 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13062 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18502 nsv293710 4 34354198 34354531 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv312288 M 24 "" nsv289515 4 34395981 34396055 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308093 M 24 "" dgv1607e1 4 34459337 34779109 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv18218,essv24232,essv4695,essv15056,essv15836,essv20927,esv629,essv23054,essv16292,essv21057,essv12172 M 271 0 0 "" NA06991,NA10856,NA12057,NA12801,NA12812,NA18622,NA19101,NA19129,NA19161,NA19223 nsv829900 4 34471757 34595771 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443544 S 95 0 1 "" nsv528331 4 34474480 34510956 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704913 S 2026 0 1 "" nsv4294 4 34505482 34550155 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2460 S 9 0 1 "" NA18555 nsv4295 4 34566714 34666499 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7073,nssv9391,nssv3249 M 9 0 3 "" NA12156,NA12878,NA18517 nsv829901 4 34572995 34714130 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443545,nssv1443549,nssv1443550,nssv1443546,nssv1443547,nssv1443548 M 95 0 6 "" dgv1608e1 4 34579485 34680339 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv19381,essv21490,essv22270,essv20687,essv18007,essv21956,essv18561,essv19126 M 271 0 0 "" NA07000,NA07019,NA10830,NA10851,NA12005,NA12044,NA12762,NA12802 dgv1609e1 4 34588161 34638958 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv22617,essv19309,essv24179,essv18530,essv3918,essv24358,essv20814,essv19484 M 271 0 0 "" NA07022,NA10839,NA10855,NA12154,NA12750,NA12751,NA12763,NA18960 dgv84n17 4 34597970 34623564 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437374,nsv437373 M 60 0 2 "" NA18860,NA19132 dgv85n17 4 34597970 34654049 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437372,nsv436935 M 60 0 2 "" NA12802,NA19208 nsv461327 4 34600232 34628243 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537728 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01259 nsv508277 4 34600625 34671821 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618736 S 4 0 1 "" NA10860 nsv510890 4 34600625 34671821 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618634 S 4 0 0 "" CHM nsv442901 4 34601591 34646749 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv10480 4 34601994 34652454 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12421,nssv13213,nssv11927,nssv11966,nssv11806,nssv13122,nssv12318,nssv14010,nssv13058,nssv11857,nssv12309,nssv11612,nssv29138,nssv29086,nssv12629,nssv11752,nssv11990,nssv11715,nssv11965,nssv13823 M 31 20 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA11830,NA12155,NA12740,NA12872,NA18502,NA18504,NA18537,NA18552,NA18563,NA18564,NA18572,NA18853,NA18942,NA18972,NA18980,NA19007,NA19173,NA19221,NA19240 nsv433454 4 34602203 34645595 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463335 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA12156 nsv437917 4 34602808 34687853 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv468256,nssv468269,nssv468260,nssv468257,nssv468262,nssv468271,nssv468253,nssv468249,nssv468259,nssv468261,nssv468251,nssv468270,nssv468267,nssv468266,nssv468264,nssv468265,nssv468255,nssv468254,nssv468247,nssv468248,nssv468250,nssv468268,nssv468258 M 269 0 18 Samples from several populations that are part of the HapMap project. "" NA07034,NA10859,NA10860,NA11832,NA11992,NA12156,NA12802,NA12815,NA12878,NA18529,NA18858,NA18860,NA19098,NA19131,NA19132,NA19200,NA19206,NA19208 esv33822 4 34603601 34649354 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93843,essv100752,essv94371,essv96970,essv95516,essv97148,essv99936,essv93379,essv98460 M 51 0 9 "" 21634,21656,21808,21817,21847,22075,22086,22170,22352 dgv1610e1 4 34604640 34638958 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv20463,essv1054,essv9840,essv18668,essv4100,essv13998,essv18501,essv19747,essv21351,essv18477,essv8720,essv19045,essv22253,essv18028,essv22698,essv1655 M 271 0 0 "" NA06994,NA07034,NA10859,NA10860,NA11832,NA11992,NA12004,NA12056,NA12156,NA12878,NA18529,NA18961,NA18975,NA19098,NA19144,NA19200 dgv1611e1 4 34604640 34668195 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv23310,essv7942,essv17354,essv24220,essv8398,essv14255,essv8696,essv14956,essv23161,essv20509,essv16611,essv20723,essv24625,essv18051,essv19349,essv24334,essv5889,essv6052,essv18537,essv22026,essv12890,essv18885,essv19833,essv16190 M 271 0 0 "" NA06985,NA06993,NA10831,NA10846,NA10847,NA11882,NA11993,NA12144,NA12264,NA12716,NA12717,NA12752,NA12815,NA18506,NA18517,NA18522,NA18576,NA18603,NA18912,NA19093,NA19100,NA19132,NA19203,NA19208 dgv1612e1 4 34608481 34779109 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2985,essv6294,essv7139,essv23453,essv12362,essv7153,essv2869,essv19441,essv18385,essv6150,essv6577,essv11668,essv19497,essv17903,essv3369,essv12845,essv3881 M 271 0 0 "" NA10854,NA11840,NA12003,NA12249,NA12864,NA18532,NA18537,NA18547,NA18609,NA18621,NA18945,NA18953,NA18981,NA18994,NA19120,NA19138,NA19154 nsv516874 4 34615918 34628243 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv669650,nssv654815,nssv655089,nssv668642,nssv687117,nssv664414,nssv669694,nssv664533,nssv655314,nssv668082,nssv677966,nssv662839,nssv657865,nssv683092,nssv676430,nssv662414,nssv676161,nssv668184,nssv667861,nssv667230,nssv678602,nssv691144,nssv666722,nssv680324,nssv658435,nssv685950,nssv658054,nssv666374,nssv657821,nssv687854,nssv653835,nssv674374,nssv669309,nssv691611,nssv682988,nssv660062,nssv655189,nssv671754,nssv652604,nssv668390,nssv677456,nssv656498,nssv663249,nssv683566,nssv655511,nssv681930,nssv662907,nssv683901,nssv684406,nssv654185,nssv665714,nssv670564,nssv665565,nssv654212,nssv664616,nssv693725,nssv677623,nssv668618,nssv684199,nssv689630,nssv663109,nssv656170,nssv653469,nssv684154,nssv660081,nssv659880,nssv670891,nssv668137,nssv690500,nssv693864,nssv666326,nssv659179,nssv687226,nssv659134,nssv663835,nssv655975,nssv657849,nssv667775,nssv663495,nssv682156,nssv685010,nssv655370,nssv691357,nssv690897,nssv661521,nssv652782,nssv686407,nssv658307,nssv689491,nssv674007,nssv677343,nssv660721,nssv677660,nssv689151,nssv673687,nssv660998,nssv653625,nssv680115,nssv692853,nssv655432,nssv652224,nssv692431,nssv679566,nssv676830,nssv665592,nssv689886,nssv656900,nssv675583,nssv685588,nssv668959,nssv675510,nssv682830,nssv693788,nssv658098,nssv686266,nssv691542,nssv684549,nssv653580,nssv676285,nssv666976,nssv659252,nssv678404,nssv667827,nssv681916,nssv693153,nssv659563,nssv688505,nssv668793,nssv689943,nssv678951,nssv686983,nssv680803,nssv654711,nssv670352,nssv658890,nssv693999,nssv682934,nssv690314,nssv687248,nssv688749,nssv658755,nssv659282,nssv666857,nssv682758,nssv653511,nssv672536,nssv693517 M 2026 2 145 "" dgv650n27 4 34615918 34654782 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv461330,nsv461329 M 1557 0 2 "" HGDP01260,NINDS_33 nsv524274 4 34615918 34674690 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700172 S 2026 1 0 "" dgv86n17 4 34623564 34664260 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437376,nsv437375 M 60 0 2 "" NA18860,NA19132 nsv821635 4 34631676 34916910 CNV Loss Sebat_et_al_2004 15273396 ROMA Custom Nimblegen photoprint 85000 probe ROMA oligo array nssv1421360,nssv1421364,nssv1421359,nssv1421362,nssv1421361,nssv1421365 M 31 0 6 "" nsv10481 4 34683217 34722191 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14040 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19221 nsv829902 4 34724618 34871596 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443553,nssv1443552 M 95 1 1 "" nsv461331 4 34729164 34777944 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537732 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00752 nsv507161 4 34742888 34748888 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622888,nssv620241 M 4 2 0 "" NA15510,NA18994 nsv4296 4 34776545 34810513 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3126 S 9 1 0 "" NA18555 nsv521425 4 34892384 34896808 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698033 S 2026 0 1 "" nsv515648 4 34895948 34896111 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv686724,nssv663250,nssv676431,nssv664235 M 2026 0 4 "" nsv509887 4 34962022 34968022 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621226,nssv618155,nssv623938 M 4 0 3 "" CHM,NA15510,NA18994 nsv516130 4 34972226 34972759 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv666401,nssv692558,nssv655889,nssv684083,nssv670697,nssv687596,nssv678353,nssv672967 M 2026 0 8 "" nsv829903 4 34976951 35123150 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443555,nssv1443554,nssv1443556 M 95 3 0 "" nsv293264 4 35042340 35042423 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311842 M 24 "" nsv292093 4 35062822 35066992 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310671 M 24 "" nsv507162 4 35175215 35181215 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621743,nssv617629 M 4 2 0 "" CHM,NA10860 nsv507163 4 35182229 35188229 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622889,nssv620242,nssv621744,nssv617630 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv517564 4 35197719 35233197 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv666304,nssv652371,nssv685541,nssv676450,nssv661859,nssv654613,nssv689956 M 2026 0 7 "" esv32900 4 35361725 35362223 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98235 S 51 0 1 "" 21772 esv32981 4 35373415 35376106 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93329 S 51 1 0 "" 22170 esv2752045 4 35374700 35406300 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6983627,essv6989833 M 771 0 1 "" BEC_674 esv33132 4 35398996 35399324 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv94335 S 51 0 1 "" 21808 nsv507164 4 35406905 35412905 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617631 S 4 1 0 "" CHM nsv4297 4 35408950 35439646 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv11082 S 9 1 0 "" NA15510 nsv509888 4 35411240 35417240 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618156 S 4 0 1 "" CHM nsv522293 4 35573138 35575441 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695075 S 2026 0 1 "" nsv441868 4 35670917 35673973 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv508278 4 35712819 35742673 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622482 S 4 0 1 "" NA18994 nsv829905 4 35719211 35910024 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443557 S 95 1 0 "" dgv141n6 4 35730292 35730378 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv292207,nsv289691 M 24 "" nsv829906 4 35850421 36010629 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443558,nssv1443559,nssv1443561,nssv1443560 M 95 4 0 "" nsv461332 4 35903809 35952053 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537733 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01416 nsv4300 4 35933548 35978657 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7945 S 9 0 1 "" NA12156 nsv829907 4 35982860 36142148 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443563 S 95 1 0 "" nsv509889 4 36009660 36015660 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618157,nssv622049,nssv623939,nssv621227 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv4301 4 36115117 36144418 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7074 S 9 1 0 "" NA12156 dgv142n6 4 36292471 36292822 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv289593,nsv289540 M 24 "" nsv525428 4 36431854 36439164 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701554 S 2026 0 1 "" nsv291876 4 36475133 36475243 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310454 M 24 "" nsv289554 4 36538308 36538493 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308132 M 24 "" nsv291352 4 36580189 36580189 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309930 M 24 "" nsv829908 4 36635836 36821031 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443565,nssv1443564,nssv1443566 M 95 3 0 "" nsv291348 4 36665313 36665655 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309926 M 24 "" nsv522133 4 36725049 36726701 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694907 S 2026 0 1 "" nsv515924 4 36726701 36753990 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv672684,nssv654868,nssv677309,nssv665653,nssv675584,nssv687013,nssv661255,nssv691235,nssv703771,nssv679905,nssv698335,nssv665321 M 2026 0 12 "" nsv527084 4 36821044 36828144 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703463 S 2026 0 1 "" nsv291965 4 36948491 36948547 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310543 M 24 "" nsv4302 4 37114125 37146497 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4735 S 9 1 0 "" NA19129 nsv528187 4 37153983 37159369 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704743 S 2026 0 1 "" nsv516377 4 37158265 37158322 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv667903,nssv677795 M 2026 0 2 "" nsv829909 4 37285284 37437698 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443567 S 95 0 1 "" nsv521553 4 37347453 37348859 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698168 S 2026 0 1 "" nsv4303 4 37401846 37415697 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3250 S 9 1 0 "" NA12878 nsv291457 4 37562163 37562212 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310035 M 24 "" nsv520793 4 37626365 37627617 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697614 S 2026 0 1 "" nsv526455 4 37679732 37681456 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702758 S 2026 0 1 "" nsv526805 4 37723345 37723719 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703159 S 2026 0 1 "" nsv461334 4 37815880 37834131 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537734 S 1557 0 1 "" NINDS_56 nsv4304 4 37995698 38026042 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4736 S 9 1 0 "" NA19129 nsv517317 4 38176866 38183619 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv680890,nssv652141,nssv690613,nssv652483,nssv672326,nssv671651,nssv651693,nssv684763,nssv655792,nssv652634,nssv686368,nssv676617 M 2026 10 2 "" nsv520643 4 38281186 38288222 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv675968,nssv678823,nssv673492 M 2026 0 3 "" dgv319n21 4 38288222 38361863 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv524517,nsv527181 M 2026 0 2 "" nsv4305 4 38308181 38328879 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4671 S 9 0 1 "" NA19129 nsv4306 4 38359583 38388501 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7075 S 9 1 0 "" NA12156 nsv519560 4 38462274 38467163 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696921 S 2026 0 1 "" nsv461336 4 38502752 38525495 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537735 S 1557 0 1 "" 1780862573_A nsv524237 4 38519500 38525003 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700127 S 2026 0 1 "" nsv818227 4 38670483 38681326 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415565 S 112 1 0 "" NA12154 nsv461337 4 38790574 38835196 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537736 S 1557 0 1 "" 1798860192_A nsv291693 4 38853657 38853938 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310271 M 24 "" nsv441869 4 39409127 39411728 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv436937 4 39516880 39560771 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv466818 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA12707 nsv516320 4 39521304 39533213 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv691167,nssv686144,nssv658999,nssv689383,nssv667550,nssv679009,nssv686984,nssv676361,nssv689713,nssv680677,nssv654869,nssv656761,nssv683980,nssv685445,nssv672773,nssv655670 M 2026 0 16 "" nsv441870 4 39526975 39535899 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv518644 4 39531374 39551075 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696093 S 2026 0 1 "" nsv528308 4 39579195 39640682 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704886 S 2026 1 0 "" nsv461338 4 39633020 39681086 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537737 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00110 esv2422397 4 39650221 39872007 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161495 S 181 1 0 "" ND01701 nsv520312 4 39698305 39744117 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv679239,nssv662773,nssv674100 M 2026 3 0 "" nsv290515 4 39768898 39769644 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309093 M 24 "" nsv527656 4 39807504 39870318 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704127 S 2026 0 1 "" nsv461341 4 39807504 40009674 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537739 S 1557 1 0 "" NINDS_78 nsv525389 4 39829850 39870318 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701511 S 2026 0 1 "" nsv291065 4 39856934 39856934 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309643 M 24 "" nsv292296 4 40082231 40086648 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310874 M 24 "" nsv526806 4 40102100 40105451 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703160 S 2026 0 1 "" nsv522288 4 40102100 40107907 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695070 S 2026 0 1 "" nsv515912 4 40105451 40107907 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv673316,nssv685104,nssv665274 M 2026 0 3 "" nsv829910 4 40212698 40400910 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443568 S 95 0 1 "" nsv528266 4 40228801 40237625 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704834 S 2026 0 1 "" dgv1613e1 4 40375955 40580395 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv95,essv11415 M 271 0 0 "" NA18857 nsv10482 4 40409235 40416276 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28957 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA12802 nsv10484 4 40435850 40438494 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13243 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18504 nsv10485 4 40483204 40498713 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11995 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18980 nsv289868 4 40492604 40496079 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308446 M 24 "" nsv829911 4 40494373 40649695 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443569 S 95 1 0 "" nsv461344 4 40524904 40619090 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537740 S 1557 1 0 "" NINDS_41 nsv525845 4 40524904 40619090 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702038 S 2026 1 0 "" nsv292656 4 40539731 40540731 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311234 M 24 "" nsv829912 4 40563037 40683545 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443570 S 95 0 1 "" nsv10486 4 40590540 40778033 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12303,nssv11745,nssv12025,nssv11812 M 31 4 0 Samples from several populations that are part of the HapMap project. "" NA07048,NA18537,NA18942,NA18980 nsv290937 4 40595768 40595768 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309515 M 24 "" nsv4307 4 40639002 40666167 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7946 S 9 0 1 "" NA12156 nsv461346 4 40672580 40698122 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537741 S 1557 0 1 "" 1780854419_A nsv519604 4 40677881 40684216 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696946 S 2026 0 1 "" nsv291290 4 40807383 40807383 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309868 M 24 "" nsv4308 4 40819491 40854787 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv384 S 9 1 0 "" NA19240 nsv524448 4 40823672 40832143 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700381 S 2026 0 1 "" nsv292366 4 40852192 40852192 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310944 M 24 "" nsv829913 4 40897723 41062329 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443571 S 95 1 0 "" nsv291112 4 40909018 40909133 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309690 M 24 "" nsv829914 4 40915626 41085348 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443575,nssv1443574,nssv1443572 M 95 0 3 "" nsv293565 4 41002983 41002983 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv312143 M 24 "" nsv471807 4 41246982 41248813 CNV Loss Hinds et al 2006 16327809 Oligo_aCGH,PCR Custom Perlegen arrays nssv646088 M 0.021 95 "" nsv524341 4 41247058 41248596 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700248 S 2026 0 1 "" nsv441871 4 41247062 41248495 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv293326 4 41262625 41262674 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311904 M 24 "" nsv290711 4 41286141 41286240 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309289 M 24 "" nsv441872 4 41298659 41307781 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv4309 4 41354364 41386522 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3251 S 9 1 0 "" NA12878 nsv829916 4 41400257 41582010 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443588,nssv1443598,nssv1443594,nssv1443587,nssv1443593,nssv1443589,nssv1443592,nssv1443591,nssv1443590,nssv1443597,nssv1443596,nssv1443579,nssv1443599,nssv1443586,nssv1443578,nssv1443577,nssv1443576,nssv1443585,nssv1443581,nssv1443580,nssv1443582,nssv1443583 M 95 0 22 "" esv32898 4 41587461 41589446 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98898,essv100769,essv98292,essv94357,essv97001,essv95576,essv95515,essv93732,essv97116,essv100081,essv93201,essv98367 M 51 12 0 "" 21606,21656,21772,21808,21817,21841,21847,21972,22075,22086,22170,22352 nsv517276 4 41774554 41792178 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv655868,nssv659904,nssv654187 M 2026 0 3 "" esv33587 4 41780338 41780376 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100105 S 51 0 1 "" 22086 nsv291842 4 41928985 41934480 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310420 M 24 "" nsv527340 4 41965290 42006727 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703766 S 2026 0 1 "" nsv523585 4 41966549 41993478 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699375 S 2026 1 0 "" esv32867 4 42034197 42036465 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93303 S 51 1 0 "" 22170 nsv509890 4 42383125 42389125 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618158 S 4 0 1 "" CHM nsv829917 4 42429509 42639547 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443600 S 95 0 1 "" nsv829918 4 42472329 42688806 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443601 S 95 1 0 "" nsv10487 4 42538590 42547076 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12481,nssv13273,nssv13152,nssv12020,nssv13064 M 31 5 0 Samples from several populations that are part of the HapMap project. "" NA18502,NA18504,NA18517,NA18853,NA19240 nsv471808 4 42546988 42550453 CNV Loss Hinds et al 2006 16327809 Oligo_aCGH,PCR Custom Perlegen arrays nssv646089 M 0.043 95 "" nsv818228 4 42547056 42549622 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418265,nssv1418266,nssv1416334,nssv1417088,nssv1416335 M 112 0 5 "" NA18529,NA18856,NA18857,NA19093,NA19094 nsv515863 4 42547056 42553042 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv687943,nssv655950,nssv659023,nssv652220,nssv691835,nssv678102,nssv681841,nssv673493,nssv665501,nssv677538,nssv677967,nssv664236,nssv683453,nssv663251,nssv660388,nssv685254,nssv683146,nssv678405,nssv675907,nssv679831,nssv654647,nssv691083,nssv670252,nssv663266,nssv685650,nssv678577,nssv686113,nssv682209,nssv673832,nssv675774,nssv683525,nssv673034,nssv688372,nssv657259,nssv692265,nssv665695,nssv667801,nssv672537,nssv664091,nssv672033,nssv658506,nssv660794,nssv668562,nssv660310,nssv681815,nssv680678 M 2026 0 46 "" nsv519709 4 42568706 42586216 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697006 S 2026 0 1 "" nsv508279 4 42573585 42624197 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617488 S 4 0 1 "" CHM nsv4311 4 42596061 42617657 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4737 S 9 0 1 "" NA19129 nsv4312 4 42652740 42671958 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7077 S 9 0 1 "" NA12156 nsv525721 4 42740633 42744935 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701884 S 2026 0 1 "" nsv293526 4 42869354 42869413 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv312104 M 24 "" nsv291473 4 42869412 42869471 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310051 M 24 "" nsv528702 4 42923884 42956243 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705349 S 2026 0 1 "" dgv1614e1 4 42950671 43004531 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv20836,essv24015,essv25058 M 271 0 0 "" NA11829,NA12873,NA12892 dgv1615e1 4 42950671 43051416 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv7511,esv1006 M 271 0 0 "" NA18532 dgv1616e1 4 42965638 42988442 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv22265,essv3255,essv6064,essv3638 M 271 0 0 "" NA11992,NA18603,NA18966,NA18967 essv7458 4 42970519 43004531 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18633 essv3573 4 42987438 43048682 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18987 nsv519342 4 43142933 43146493 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv692583,nssv657749,nssv689247,nssv655512 M 2026 0 4 "" nsv509891 4 43202402 43208402 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618159 S 4 0 1 "" CHM nsv289426 4 43368599 43368599 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308004 M 24 "" nsv290055 4 43368600 43368600 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308633 M 24 "" nsv818229 4 43374596 43378528 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417667 S 112 1 0 "" NA18994 nsv509892 4 43462645 43468645 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623940,nssv621228,nssv618160,nssv622050 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv818230 4 43543304 43593268 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417853 S 112 0 1 "" NA18853 nsv4313 4 43571414 43616841 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7078 S 9 0 1 "" NA12156 nsv441873 4 43579926 43582798 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv515598 4 43582037 43582402 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv664043,nssv658263 M 2026 0 2 "" nsv471809 4 43592670 43593132 CNV Loss Hinds et al 2006 16327809 Oligo_aCGH,PCR Custom Perlegen arrays nssv646090 M 1.918 95 "" nsv526135 4 43709960 43717399 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702390 S 2026 0 1 "" nsv289594 4 43772425 43772765 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308172 M 24 "" nsv291220 4 43788413 43788413 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309798 M 24 "" nsv290105 4 43788467 43788467 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308683 M 24 "" nsv291218 4 43790930 43790930 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309796 M 24 "" nsv291327 4 43790941 43790941 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309905 M 24 "" nsv289530 4 43790944 43790944 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308108 M 24 "" nsv4314 4 43839202 43865673 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2462 S 9 1 0 "" NA18555 nsv442902 4 43862813 43866674 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv4315 4 43878477 43924497 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4738 S 9 0 1 "" NA19129 nsv4316 4 43890602 43946130 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3127,nssv7947 M 9 2 0 "" NA12156,NA18555 nsv523263 4 43932639 43993694 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698997 S 2026 0 1 "" nsv292914 4 44032276 44032383 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311492 M 24 "" nsv4317 4 44052661 44097318 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7948 S 9 0 1 "" NA12156 nsv526878 4 44149475 44151406 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703236 S 2026 1 0 "" nsv441874 4 44164760 44171902 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv517413 4 44169058 44175757 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv658891,nssv684407,nssv670172,nssv682422,nssv668020,nssv668056,nssv651952,nssv679882,nssv681977,nssv665177,nssv679118,nssv685465,nssv677509,nssv685564,nssv654967 M 2026 0 15 "" nsv520405 4 44216948 44218422 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697396 S 2026 0 1 "" nsv4318 4 44271902 44307063 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3252 S 9 1 0 "" NA12878 nsv461348 4 44306798 44377282 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537742 S 1557 0 1 "" 1780854202_A nsv291320 4 44348204 44348657 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309898 M 24 "" nsv290994 4 44350306 44350623 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309572 M 24 "" nsv433464 4 44367472 44372952 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463345 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA18956 nsv291346 4 44428800 44432605 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309924 M 24 "" nsv509893 4 44482356 44488356 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618161,nssv622051,nssv623941 M 4 0 3 "" CHM,NA10860,NA18994 nsv4319 4 44514463 44559841 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7079 S 9 0 1 "" NA12156 nsv507165 4 44741732 44747732 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617632 S 4 1 0 "" CHM dgv1617e1 4 44801372 44874500 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1115,essv19834,essv21582 M 271 0 0 "" NA10847,NA12146 nsv10488 4 44806206 44852544 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11495,nssv13047,nssv14070 M 31 1 2 Samples from several populations that are part of the HapMap project. "" NA10847,NA19132,NA19221 dgv186e55 4 44809500 44846800 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv34200,esv2752046,esv2752048,esv34309,esv34407 M 771 5 0 "" BEC_519,BEC_693,NA10847,NA11881,NA12146 esv2752047 4 44809500 44913134 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6982778,essv6982779,essv6986256,essv6982781,essv6982780 M 771 1 0 "" BEC_592 nsv516124 4 44809531 44839922 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv672453,nssv705044,nssv693475,nssv666375,nssv676831,nssv671025,nssv674390 M 2026 7 0 "" essv19874 4 44811410 44846780 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA11881 nsv829919 4 44910829 45094736 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443602 S 95 0 1 "" nsv461349 4 45016619 45105974 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537743 S 1557 0 1 "" NINDS_58 nsv471716 4 45019497 45022420 CNV Loss Hinds et al 2006 16327809 Oligo_aCGH,PCR Custom Perlegen arrays nssv645997 M 0.021 95 "" nsv461351 4 45065428 45124794 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537745 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00640 nsv4320 4 45069596 45098353 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10402 S 9 1 0 "" NA18956 nsv4322 4 45076524 45121000 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2463 S 9 0 1 "" NA18555 nsv290368 4 45085354 45085354 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308946 M 24 "" nsv518941 4 45110474 45117756 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696408 S 2026 0 1 "" nsv525215 4 45196043 45215233 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701298 S 2026 0 1 "" nsv290323 4 45281980 45282030 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308901 M 24 "" nsv292192 4 45281998 45282048 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310770 M 24 "" dgv651n27 4 45288958 45436173 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv461352,nsv461354 M 1557 2 0 "" HGDP00140,HGDP01079 nsv461353 4 45311381 46068775 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537747 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00455 nsv515843 4 45363513 45366813 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv666564,nssv674317,nssv665231,nssv676120,nssv664992,nssv693699,nssv662174,nssv678824,nssv666004,nssv677879 M 2026 0 10 "" nsv292525 4 45441665 45441665 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311103 M 24 "" nsv290086 4 45441712 45441712 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308664 M 24 "" nsv525509 4 45479775 45482587 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701641 S 2026 1 0 "" nsv4323 4 45530902 45554433 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7949 S 9 0 1 "" NA12156 nsv471624 4 45668002 45876447 CNV Gain+Loss Sharp et al 2005 15918152 BAC_aCGH,FISH Eichler Segmental Duplication BAC array nssv550110,nssv550111 M 48 1 1 "" NA10472,NA15733 nsv829920 4 45766555 45926823 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443604,nssv1443603 M 95 0 2 "" nsv829921 4 45845807 46009035 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443605 S 95 1 0 "" nsv509894 4 45878689 45884689 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621229,nssv622052 M 4 0 2 "" NA10860,NA15510 nsv292112 4 45896933 45899137 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310690 M 24 "" nsv293510 4 46043726 46045956 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv312088 M 24 "" nsv293762 4 46073968 46073968 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv312340 M 24 "" nsv527418 4 46158851 46162791 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703856 S 2026 0 1 "" nsv818231 4 46395970 46430775 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417854 S 112 1 0 "" NA18852 nsv818232 4 46430775 46447521 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417249 S 112 1 0 "" NA18577 nsv292736 4 46605222 46605222 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311314 M 24 "" nsv291043 4 46605963 46605963 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309621 M 24 "" nsv4324 4 46838968 46872887 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4739 S 9 1 0 "" NA19129 nsv829922 4 46934713 47102109 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443607 S 95 1 0 "" nsv4325 4 46983271 47027954 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7950 S 9 0 1 "" NA12156 nsv4326 4 47153226 47185950 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4740 S 9 1 0 "" NA19129 nsv829923 4 47277067 47519371 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443612,nssv1443611,nssv1443608,nssv1443610,nssv1443609,nssv1443614,nssv1443613 M 95 7 0 "" nsv528326 4 47365982 47374766 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704907 S 2026 1 0 "" nsv4327 4 47373509 47398913 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10404 S 9 1 0 "" NA18956 nsv829924 4 47511833 47707593 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443615,nssv1443616 M 95 2 0 "" nsv4328 4 47657395 47703181 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7080 S 9 0 1 "" NA12156 nsv293341 4 47766055 47766129 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311919 M 24 "" nsv290106 4 47819176 47819299 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308684 M 24 "" nsv509895 4 47829500 47835500 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618162 S 4 0 1 "" CHM nsv292298 4 47947157 47947309 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310876 M 24 "" nsv293505 4 47947242 47947535 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv312083 M 24 "" nsv461357 4 48089186 48115080 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537749 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01297 nsv461358 4 48092844 48115080 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537750 S 1557 0 1 "" 1798860592_A nsv509003 4 48093049 48138106 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623412 S 4 1 0 "" NA18994 nsv4329 4 48095041 48103901 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7951 S 9 0 1 "" NA12156 dgv143n6 4 48161523 48169332 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv293338,nsv292826 M 24 "" nsv528084 4 48228779 48254847 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704620 S 2026 0 1 "" nsv509896 4 48236273 48242273 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622053,nssv621230,nssv623942,nssv618163 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv829925 4 48308621 48480270 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443619,nssv1443620,nssv1443618 M 95 1 2 "" esv33592 4 48560890 48561288 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100672 S 51 0 1 "" 21656 nsv4330 4 48773964 48799049 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7952 S 9 0 1 "" NA12156 nsv441875 4 48820562 48834305 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv1618e1 4 48890029 49501045 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv20820,essv5677,essv4260,esv740,essv18904 M 271 0 0 "" NA10855,NA12717,NA18603,NA18605 nsv510920 4 48933750 49011256 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624292,nssv621574 M 4 0 0 "" NA15510,NA18994 nsv469558 4 48940210 49041632 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649669 M 265 0 4 Samples from several populations that are part of the HapMap project. "" nsv829927 4 49001294 49087549 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443621 S 95 1 0 "" nsv10489 4 49002100 49003548 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13853,nssv13077 M 31 1 1 Samples from several populations that are part of the HapMap project. "" NA18972,NA19132 nsv433364 4 49017711 49165931 CNV Gain Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463245 S 9 1 0 Samples from several populations that are part of the HapMap project. "" NA19240 nsv10490 4 49022202 49363387 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12659,nssv11836,nssv29116,nssv29146,nssv11616,nssv11866,nssv12056,nssv12058,nssv13883,nssv13182,nssv14130,nssv12333,nssv12264,nssv13303,nssv12921,nssv12348,nssv11805,nssv11642,nssv12234,nssv12055,nssv12026,nssv12154,nssv13118,nssv11996 M 31 7 13 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10863,NA12155,NA18502,NA18504,NA18537,NA18552,NA18564,NA18572,NA18860,NA18972,NA18975,NA18980,NA19007,NA19144,NA19173,NA19221 nsv829928 4 49066257 49121206 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443623,nssv1443622 M 95 2 0 "" nsv7360 4 49083178 49168447 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2464,nssv10405,nssv11083,nssv7082,nssv9640,nssv9392,nssv385,nssv4741 M 9 0 0 "" NA12156,NA15510,NA18507,NA18517,NA18555,NA18956,NA19129,NA19240 nsv255 4 49106004 49151410 OTHER Inversion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv255 S 1 0 0 "" NA15510 nsv4331 4 49106209 49163425 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3253 S 9 0 1 "" NA12878 nsv4333 4 49128139 49131109 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4742,nssv7081 M 9 2 0 "" NA12156,NA19129 dgv1619e1 4 49329870 49501045 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv20256,essv6923 M 271 0 0 "" NA12144,NA18605 nsv433366 4 49330226 49491948 CNV Gain Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463247 S 9 1 0 Samples from several populations that are part of the HapMap project. "" NA19240 nsv829929 4 49331089 49385014 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443624 S 95 1 0 "" nsv7361 4 49334377 49432459 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv11084,nssv7083,nssv9641,nssv4743,nssv3254,nssv387 M 9 0 0 "" NA12156,NA12878,NA15510,NA18507,NA19129,NA19240 nsv4334 4 49349738 49374469 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10406,nssv3256,nssv9642,nssv3255,nssv7084,nssv9393,nssv2466,nssv11086,nssv2465,nssv11085,nssv386 M 9 8 0 "" NA12156,NA12878,NA15510,NA18507,NA18517,NA18555,NA18956,NA19240 nsv256 4 49351463 49412413 OTHER Inversion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv256 S 1 0 0 "" NA15510 nsv257 4 49353209 49354608 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv257 S 1 1 0 "" NA15510 nsv258 4 49355027 49357318 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv258 S 1 1 0 "" NA15510 nsv10491 4 49363387 49471718 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11896,nssv11926,nssv13913,nssv11646,nssv13124,nssv12951,nssv13148,nssv11835,nssv12086,nssv13212,nssv12184,nssv11672 M 31 0 11 Samples from several populations that are part of the HapMap project. "" NA07029,NA10839,NA10863,NA12155,NA18502,NA18517,NA18537,NA18552,NA18860,NA18972,NA19007 nsv829930 4 49393774 49472520 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443625,nssv1443626 M 95 2 0 "" nsv4335 4 49428566 49466737 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4672 S 9 0 1 "" NA19129 nsv829931 4 49443163 49472520 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443627,nssv1443630,nssv1443631 M 95 0 3 "" dgv1620e1 4 52501046 52679030 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv3312,essv9420,essv10779,essv4815,essv11088,essv5203,essv5299,essv22088,essv14600,essv4430,essv15205,essv18950,essv16166,essv10566,essv7597,essv13692,essv7038,essv20350,essv9169,essv4145,essv11895,essv12302,essv19685,essv16824,essv16919,essv21021,essv16462,essv15779,essv4253,essv15842,essv18839,essv24057,essv11252,essv6277,esv169,essv19215,essv10889,essv22601,essv13852,essv12814,essv10372,essv23668,essv22503,essv12574,essv13029,essv17773,essv16785,essv21408,essv17888,essv1604,essv6690,essv12285,essv2043,essv7133,essv2876,essv14437,essv15984,essv22656,essv22473,essv14117,essv12460,essv22303,essv11757,essv2632,essv9095,essv10304 M 271 0 0 "" NA06985,NA06991,NA07348,NA10831,NA10838,NA10859,NA10863,NA11882,NA12003,NA12005,NA12154,NA12236,NA12264,NA12740,NA12751,NA12752,NA12761,NA18501,NA18504,NA18506,NA18523,NA18537,NA18545,NA18555,NA18573,NA18603,NA18608,NA18611,NA18612,NA18620,NA18624,NA18636,NA18854,NA18859,NA18861,NA18872,NA18942,NA18949,NA18953,NA18967,NA18972,NA19093,NA19094,NA19098,NA19100,NA19101,NA19119,NA19120,NA19128,NA19131,NA19132,NA19138,NA19139,NA19144,NA19201,NA19204,NA19205,NA19207,NA19208,NA19209,NA19211,NA19221,NA19222,NA19223,NA19240 nsv829932 4 52625086 52780614 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443633,nssv1443634,nssv1443632 M 95 3 0 "" nsv10492 4 52666901 52668184 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11865 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18537 nsv829933 4 52728844 52929575 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443635 S 95 1 0 "" nsv829934 4 52860451 52881034 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443636,nssv1443638,nssv1443637 M 95 0 3 "" nsv4336 4 52902324 52934408 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7085 S 9 1 0 "" NA12156 nsv4337 4 52912512 52933469 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4744 S 9 0 1 "" NA19129 nsv509897 4 52973656 52979656 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623943,nssv621231,nssv618164 M 4 0 3 "" CHM,NA15510,NA18994 nsv526250 4 52994157 53006538 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702522 S 2026 0 1 "" nsv829935 4 53046131 53239977 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443643,nssv1443642,nssv1443641,nssv1443639,nssv1443649,nssv1443644,nssv1443648,nssv1443647,nssv1443646,nssv1443645,nssv1443652,nssv1443658,nssv1443650,nssv1443653,nssv1443657,nssv1443654,nssv1443655,nssv1443656 M 95 2 16 "" nsv4338 4 53046343 53080605 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv388 S 9 1 0 "" NA19240 nsv291268 4 53063383 53063383 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309846 M 24 "" nsv507166 4 53066694 53072694 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622890,nssv621745 M 4 2 0 "" NA10860,NA18994 nsv524494 4 53300548 53422993 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700432 S 2026 0 1 "" nsv292516 4 53469660 53475057 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311094 M 24 "" nsv525346 4 53636529 53636579 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701464 S 2026 0 1 "" nsv508280 4 53665988 53748589 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622484 S 4 0 1 "" NA18994 nsv292479 4 53755791 53757835 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311057 M 24 "" nsv471810 4 53897884 53898001 CNV Loss Hinds et al 2006 16327809 Oligo_aCGH,PCR Custom Perlegen arrays nssv646091 M 0.167 95 "" nsv441876 4 53911889 53921170 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv4339 4 53929520 53962482 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7087 S 9 1 0 "" NA12156 nsv507167 4 54062691 54068691 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620243 S 4 1 0 "" NA15510 nsv516916 4 54172634 54182274 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv654968,nssv677157 M 2026 0 2 "" nsv829936 4 54208711 54397051 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443659,nssv1443660 M 95 2 0 "" nsv437918 4 54292103 54324497 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv468272 S 269 0 1 Samples from several populations that are part of the HapMap project. "" NA12802 nsv4340 4 54330576 54363509 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7088 S 9 1 0 "" NA12156 nsv10493 4 54331085 54340528 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12050 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18853 nsv521350 4 54462643 54470190 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697960 S 2026 0 1 "" nsv527173 4 54467156 54470190 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703568 S 2026 0 1 "" nsv527672 4 54467156 54478129 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704147 S 2026 0 1 "" nsv291450 4 54787867 54792054 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310028 M 24 "" nsv523058 4 54859545 54886644 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698742 S 2026 0 1 "" nsv4341 4 55013013 55058583 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7089 S 9 0 1 "" NA12156 nsv4342 4 55019046 55028540 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7954 S 9 1 0 "" NA12156 nsv471811 4 55059180 55061377 CNV Loss Hinds et al 2006 16327809 Oligo_aCGH,PCR Custom Perlegen arrays nssv646092 M 0.064 95 "" nsv517784 4 55060458 55061283 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv675908,nssv659784,nssv692175,nssv662175,nssv672426,nssv679119,nssv671786,nssv681785,nssv665974,nssv677282,nssv672085,nssv686725,nssv689767,nssv682454,nssv651731,nssv666054,nssv657370,nssv660903,nssv666951,nssv668215,nssv665232,nssv693109,nssv683864,nssv676184 M 2026 0 24 "" nsv4344 4 55101535 55146163 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7955 S 9 0 1 "" NA12156 nsv471812 4 55162022 55162094 CNV Loss Hinds et al 2006 16327809 Oligo_aCGH,PCR Custom Perlegen arrays nssv646093 M 0.210 95 "" nsv290933 4 55257275 55257374 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309511 M 24 "" nsv521933 4 55290544 55352994 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694702 S 2026 1 0 "" nsv291726 4 55323365 55323685 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310304 M 24 "" nsv526344 4 55363416 56072047 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702636 S 2026 1 0 "" dgv144n6 4 55418744 55418820 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv289421,nsv290717 M 24 "" nsv4345 4 55485425 55519529 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7956 S 9 1 0 "" NA12156 nsv509898 4 55628640 55634640 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623944 S 4 0 1 "" NA18994 dgv145n6 4 55649603 55649857 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv289510,nsv290195 M 24 "" nsv829938 4 55677892 55698821 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443664,nssv1443663,nssv1443661,nssv1443666,nssv1443665,nssv1443667 M 95 0 6 "" nsv829939 4 55697699 55845939 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443668 S 95 1 0 "" nsv524342 4 55732459 55762463 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700249 S 2026 1 0 "" nsv291458 4 55839499 55839832 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310036 M 24 "" nsv10496 4 56177874 56682065 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12363 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA07048 nsv509899 4 56316869 56322869 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621232,nssv623945 M 4 0 2 "" NA15510,NA18994 esv32833 4 56368751 56375968 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100686 S 51 1 0 "" 21656 nsv4346 4 56429779 56472038 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7957,nssv2467,nssv3257,nssv389 M 9 4 0 "" NA12156,NA12878,NA18555,NA19240 nsv509004 4 56444713 56490976 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623413,nssv619374 M 4 2 0 "" NA10860,NA18994 nsv526956 4 56469453 56469580 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703328 S 2026 0 1 "" nsv518650 4 56469453 56471284 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696099 S 2026 0 1 "" nsv818233 4 56907529 56912567 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417322 S 112 1 0 "" NA18608 nsv829940 4 56913269 57103658 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443669 S 95 1 0 "" nsv518368 4 56972975 56981169 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695794 S 2026 0 1 "" nsv293732 4 56991413 56993619 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv312310 M 24 "" nsv4347 4 57102332 57121523 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7958 S 9 0 1 "" NA12156 nsv829941 4 57200479 57394064 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443670 S 95 0 1 "" nsv829942 4 57276219 57439164 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443671 S 95 1 0 "" nsv4348 4 57368609 57401878 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv390 S 9 0 1 "" NA19240 dgv87n17 4 57373273 57387899 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437381,nsv437378,nsv437379,nsv437377 M 60 0 4 "" NA19132,NA19142,NA19145,NA19240 nsv10497 4 57375792 57380085 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13333 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18504 nsv10498 4 57380085 57386011 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12088,nssv12511,nssv13137 M 31 0 3 Samples from several populations that are part of the HapMap project. "" NA19132,NA19144,NA19240 nsv442904 4 57384248 57385430 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv291720 4 57393022 57393022 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310298 M 24 "" nsv518984 4 57572117 57572374 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696452 S 2026 0 1 "" nsv4349 4 57578560 57608564 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4745 S 9 1 0 "" NA19129 nsv292140 4 57583495 57583546 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310718 M 24 "" nsv523211 4 57590008 57602345 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698931 S 2026 0 1 "" dgv1621e1 4 57894345 58495951 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv23324,essv19656,esv750 M 271 0 0 "" NA12264 nsv517760 4 57896188 57945089 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv672712,nssv662415,nssv703294,nssv653145,nssv701642,nssv696768 M 2026 3 3 "" dgv652n27 4 57896188 57946616 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv461363,nsv461370,nsv461369,nsv461362,nsv461371,nsv461367,nsv461364,nsv461360,nsv461368,nsv461365,nsv461366 M 1557 11 0 "" 1780854338_A,1780854574_A,1780854584_A,1780862162_A,1780862227_A,1782681217_A,1798860114_A,HGDP00529,HGDP01073,HGDP01147,NINDS_90 nsv10499 4 57901002 57903357 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13154 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18517 nsv524655 4 57922518 58544438 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700622 S 2026 0 1 "" nsv509900 4 57927843 57933843 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618165 S 4 0 1 "" CHM dgv146n6 4 57928265 57928671 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv292450,nsv290543 M 24 "" nsv10500 4 57975552 57980175 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14160,nssv12981 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18860,NA19221 esv34933 4 57980325 58411000 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6986711,essv6978798,essv6978797 M 771 1 0 "" NA12264 dgv320n21 4 57980898 58445909 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv526977,nsv526142 M 2026 2 0 "" nsv818235 4 57982295 58407549 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417339 S 112 1 0 "" NA12264 nsv526928 4 57997184 58011288 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703295 S 2026 0 1 "" nsv10501 4 57999935 58001840 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11842 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18942 nsv4350 4 58073983 58118721 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7959 S 9 0 1 "" NA12156 nsv10502 4 58090798 58107154 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12146,nssv13943,nssv11956 M 31 0 3 Samples from several populations that are part of the HapMap project. "" NA18552,NA18972,NA19007 nsv441877 4 58097303 58099282 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv10503 4 58136758 58138390 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28987 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA12802 nsv522794 4 58162869 58191744 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698438 S 2026 1 0 "" nsv829943 4 58273674 58402580 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443672 S 95 0 1 "" nsv436938 4 58336523 58356247 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv466819 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA10838 nsv509901 4 58353247 58359247 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618166,nssv622054,nssv621233,nssv623946 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv507168 4 58406492 58412492 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621746,nssv620245,nssv622891 M 4 3 0 "" NA10860,NA15510,NA18994 essv20973 4 58430351 58446870 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA10863 nsv10504 4 58444389 58467224 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13242 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18502 nsv528535 4 58589407 58599754 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705146 S 2026 0 1 "" nsv4351 4 58664305 58691649 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7960 S 9 1 0 "" NA12156 nsv524083 4 58673788 58676799 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699952 S 2026 0 1 "" nsv518417 4 58763616 58774264 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695852 S 2026 0 1 "" nsv829944 4 58892907 59063155 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443674 S 95 0 1 "" nsv526610 4 58912413 58913600 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702930 S 2026 0 1 "" nsv520956 4 59009691 59018003 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv693041,nssv678537,nssv688843,nssv687756 M 2026 0 4 "" nsv829945 4 59273601 59459962 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443675 S 95 0 1 "" nsv290922 4 59448605 59448922 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309500 M 24 "" nsv293234 4 59653159 59653212 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311812 M 24 "" nsv292261 4 59653185 59653238 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310839 M 24 "" nsv829946 4 59742537 59912633 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443676 S 95 0 1 "" nsv4352 4 59754548 59794770 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3258,nssv4746 M 9 0 2 "" NA12878,NA19129 nsv441879 4 59802841 59816859 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv515507 4 59806898 59816861 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv653374,nssv664534 M 2026 2 0 "" nsv526492 4 59806898 59827462 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702801 S 2026 1 0 "" nsv441880 4 60153715 60159211 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv507169 4 60209898 60215898 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622892 S 4 1 0 "" NA18994 nsv4353 4 60520499 60539402 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9643 S 9 1 0 "" NA18507 nsv4355 4 60639933 60675347 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3259 S 9 1 0 "" NA12878 nsv829947 4 60751720 60915200 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443677 S 95 0 1 "" nsv461373 4 60836081 60946654 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537764 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00875 dgv1622e1 4 60959924 61146015 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv20017,esv289 M 271 0 0 "" NA07048 nsv4356 4 61038516 61061402 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9394 S 9 1 0 "" NA18517 nsv291563 4 61062643 61064847 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310141 M 24 "" nsv10505 4 61070883 61072339 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13363,nssv12148 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA18504,NA19144 nsv461374 4 61115952 61188150 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537765 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00056 nsv289320 4 61158873 61161951 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv307898 M 24 "" nsv518581 4 61195470 61200344 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696025 S 2026 0 1 "" nsv519020 4 61341776 61357803 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696491 S 2026 1 0 "" dgv147n6 4 61397995 61398340 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv293569,nsv293789 M 24 "" nsv521415 4 61461748 61464206 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698025 S 2026 0 1 "" dgv1623e1 4 61623611 61796922 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv8593,essv70,essv24308,essv5902,essv5512,essv3375,essv3709,esv477 M 271 0 0 "" NA10856,NA18550,NA18632,NA18945,NA18947,NA18991,NA19239 nsv10507 4 61629102 61631625 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13167 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19132 nsv10508 4 61687730 61689700 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13393 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18504 nsv528850 4 61746424 61750000 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705529 S 2026 0 1 "" nsv10509 4 61749399 61751699 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11986 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18552 nsv4357 4 61782191 61789436 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7961 S 9 0 1 "" NA12156 nsv4358 4 62081224 62115257 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7962 S 9 1 0 "" NA12156 nsv523840 4 62103392 62117798 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699672 S 2026 0 1 "" nsv471813 4 62112448 62114213 CNV Loss Hinds et al 2006 16327809 Oligo_aCGH,PCR Custom Perlegen arrays nssv646094 M 0.360 95 "" nsv507170 4 62319026 62325026 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621747 S 4 1 0 "" NA10860 nsv829949 4 62444403 62590395 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443678 S 95 0 1 "" nsv516728 4 62562203 62568440 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv684408,nssv670488 M 2026 0 2 "" nsv461378 4 62866090 62987326 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537766 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00886 nsv4359 4 62879598 62903695 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3128 S 9 1 0 "" NA18555 nsv292356 4 63024057 63024057 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310934 M 24 "" nsv292975 4 63024061 63024061 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311553 M 24 "" nsv521486 4 63207829 63242171 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698097 S 2026 0 1 "" nsv4360 4 63460394 63532074 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2468,nssv7963 M 9 0 2 "" NA12156,NA18555 nsv509902 4 63486820 63492820 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618167 S 4 0 1 "" CHM nsv10510 4 63494261 63505140 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13197,nssv29176,nssv12016,nssv12393,nssv13973,nssv12294,nssv13272,nssv12085,nssv11872,nssv11525,nssv11895,nssv11702,nssv12178 M 31 0 13 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10847,NA18502,NA18537,NA18552,NA18572,NA18942,NA18972,NA18975,NA18980,NA19132,NA19144 nsv437919 4 63498341 63503944 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv468295,nssv468288,nssv468286,nssv468284,nssv468275,nssv468280,nssv468289,nssv468283,nssv468277,nssv468294,nssv468292,nssv468287,nssv468279,nssv468291,nssv468298,nssv468293,nssv468281,nssv468276,nssv468290,nssv468278,nssv468282,nssv468273 M 269 0 22 Samples from several populations that are part of the HapMap project. "" NA07000,NA07029,NA12761,NA18500,NA18502,NA18532,NA18537,NA18540,NA18542,NA18545,NA18609,NA18635,NA18945,NA18949,NA18952,NA18960,NA18961,NA18965,NA18966,NA18972,NA18975,NA18998 nsv442905 4 63498702 63500428 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv289527 4 63504143 63505962 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308105 M 24 "" nsv521319 4 63608054 63663746 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697926 S 2026 0 1 "" nsv4361 4 63637780 63669342 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4747 S 9 1 0 "" NA19129 nsv818236 4 63658168 63691060 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417429 S 112 1 0 "" NA18952 nsv289825 4 63702528 63711628 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308403 M 24 "" nsv509903 4 63708355 63714355 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618168 S 4 0 1 "" CHM nsv508281 4 63711355 63716970 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618737 S 4 0 1 "" NA10860 nsv829950 4 63775115 63912082 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443679 S 95 0 1 "" nsv521583 4 63783984 63787003 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698198 S 2026 1 0 "" nsv293351 4 63926917 63927235 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311929 M 24 "" nsv461379 4 63947729 63979432 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537767 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01076 nsv527766 4 63953947 63978153 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704255 S 2026 0 1 "" nsv818237 4 63967107 63978153 CNV Gain+Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417005,nssv1417987,nssv1418356,nssv1416724,nssv1417014,nssv1417350,nssv1417988,nssv1416723,nssv1417986,nssv1416894,nssv1415632,nssv1416722 M 112 1 11 "" NA06985,NA06991,NA06994,NA07345,NA07348,NA07357,NA12146,NA12248,NA12264,NA19159,NA19160,NA19161 dgv653n27 4 63967107 63979432 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv461382,nsv461381,nsv461380,nsv461386,nsv461384,nsv461388,nsv461387,nsv461385 M 1557 0 8 "" 1780854556_A,1780854576_A,1780862093_A,1782681263_A,HGDP00057,HGDP00145,NINDS_152,NINDS_215 nsv517017 4 63967107 64002192 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv670762,nssv659905,nssv678034,nssv682772,nssv654103,nssv692319,nssv688088,nssv670861,nssv660036,nssv683567,nssv657386,nssv673113,nssv667802,nssv657750,nssv655818,nssv664535,nssv655218,nssv691296,nssv667110,nssv682115,nssv684071,nssv651913,nssv656017,nssv672380,nssv685354,nssv662388,nssv692176,nssv657640,nssv653004,nssv672327,nssv661499,nssv693551,nssv654906,nssv684464,nssv665751,nssv661612,nssv685273,nssv673640,nssv688284,nssv664617,nssv657905,nssv689427,nssv679734,nssv680576,nssv686145,nssv688051,nssv664511,nssv685912,nssv655844,nssv667182,nssv660389,nssv688604,nssv673931,nssv675074,nssv663656,nssv690370,nssv668563,nssv681917,nssv677624,nssv668391,nssv657244,nssv672454,nssv678420,nssv675816,nssv681263,nssv660063,nssv663416,nssv676999,nssv686369,nssv673007,nssv676390,nssv659054,nssv677457,nssv666240,nssv684923,nssv669198,nssv655614,nssv682271,nssv680129,nssv682385,nssv668908,nssv658828,nssv668929,nssv662607,nssv688825,nssv692636,nssv678952,nssv688937,nssv653040,nssv652725,nssv663049,nssv671897,nssv688245,nssv654816,nssv672405,nssv653626,nssv671210,nssv658613,nssv677855,nssv670102,nssv668437,nssv679929,nssv680778,nssv685232,nssv672713,nssv655337,nssv667862,nssv655190,nssv690350,nssv659039,nssv687675,nssv677283,nssv665020,nssv686746,nssv669855,nssv663763,nssv692068,nssv666633,nssv656439,nssv664957,nssv665809,nssv675609 M 2026 0 122 "" nsv517519 4 64013448 64043681 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv671402,nssv674101,nssv682181,nssv674391,nssv667715,nssv688347,nssv677950,nssv690921,nssv665308,nssv671877,nssv683147,nssv655758,nssv681103,nssv683196,nssv685127,nssv680204,nssv663403,nssv652256,nssv680843,nssv690501,nssv688583,nssv684200,nssv677511,nssv674174,nssv654783,nssv688974,nssv688557,nssv660479 M 2026 0 28 "" nsv441881 4 64072696 64081860 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv461389 4 64104232 64999181 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537777 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00148 nsv518103 4 64144911 64157935 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695516 S 2026 0 1 "" nsv290587 4 64223847 64223847 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309165 M 24 "" nsv461390 4 64283482 64926659 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537778 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01062 nsv527873 4 64336357 64496943 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704372 S 2026 1 0 "" nsv461391 4 64402069 64516341 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537779 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00141 dgv654n27 4 64460188 64538394 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv461392,nsv461393,nsv461396 M 1557 0 3 "" 1780854477_A,1780862088_A,1780862312_A nsv461397 4 64469878 64516341 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537784 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00154 nsv461398 4 64487623 64538394 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537785 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01254 nsv516584 4 64496708 64545127 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv653376,nssv654614,nssv661044,nssv678679,nssv682773,nssv671359,nssv667643,nssv691633,nssv653549,nssv687135,nssv685589,nssv688493,nssv677703,nssv678913,nssv663928,nssv689273,nssv656018,nssv669070,nssv686647,nssv686146,nssv690898,nssv677199,nssv693387,nssv669838,nssv685255,nssv673573,nssv669019,nssv671449,nssv684072,nssv687757,nssv699407,nssv679832,nssv669039,nssv671304,nssv686007,nssv691315,nssv692221,nssv658644,nssv659599,nssv657956,nssv654505,nssv680679,nssv660037,nssv692854,nssv662434,nssv670862,nssv678129,nssv656677,nssv681046,nssv689544,nssv659483,nssv655387,nssv660496,nssv691268,nssv665366,nssv655479,nssv653627,nssv661769,nssv655513,nssv668414,nssv692584,nssv661422,nssv660311,nssv669695,nssv670210,nssv662514,nssv663134,nssv673008,nssv677856,nssv653960,nssv668776,nssv653174,nssv687781,nssv652027,nssv665593,nssv688815,nssv675130,nssv676391,nssv680601,nssv693042,nssv667664,nssv667183,nssv657115,nssv654059,nssv657702,nssv676618,nssv686747,nssv675876,nssv667231,nssv690984,nssv681227,nssv657482,nssv688506,nssv683133,nssv692787,nssv652825,nssv673419,nssv666376,nssv658858,nssv679680,nssv659926,nssv665877,nssv688052,nssv685565,nssv668909,nssv685928,nssv682544,nssv665696,nssv654784,nssv684628,nssv683031,nssv687353,nssv690006,nssv690555,nssv678421,nssv691682,nssv681412,nssv657751,nssv690515,nssv685149,nssv671328,nssv681900,nssv687227,nssv676302,nssv669481,nssv690714,nssv688311,nssv692656,nssv668762,nssv658892,nssv670334,nssv685798,nssv668643,nssv679735,nssv658194,nssv675511,nssv679547,nssv686037,nssv670739,nssv665233,nssv660359,nssv662234,nssv674059,nssv655014,nssv682935,nssv691702,nssv688386,nssv679131,nssv655819,nssv688750,nssv702717,nssv668428,nssv689814,nssv656735,nssv654188,nssv661988,nssv671898,nssv682241,nssv664222,nssv690972,nssv651694,nssv675202,nssv688299,nssv674594,nssv658806,nssv690224,nssv668960,nssv692069,nssv653146,nssv679443,nssv672019,nssv652563,nssv671672,nssv653314,nssv693700,nssv653085,nssv672572,nssv652943,nssv693806,nssv678899,nssv658099,nssv691715,nssv674782,nssv659146,nssv655869,nssv670030,nssv653438,nssv653667,nssv663196,nssv657724,nssv672161,nssv660569,nssv677175,nssv677070,nssv667966,nssv653732,nssv690574,nssv677345,nssv661112,nssv689186,nssv686818,nssv662057,nssv659670,nssv691358,nssv664692,nssv682556,nssv658770,nssv689887,nssv683473,nssv652257,nssv675909,nssv660414,nssv675475,nssv689103,nssv678406,nssv668597,nssv691756,nssv693727,nssv692821,nssv685620,nssv659810,nssv674350,nssv688844,nssv693154,nssv685128,nssv677223,nssv689903,nssv660188,nssv679700,nssv663429,nssv687529,nssv704169,nssv693789,nssv658289,nssv690782,nssv678635,nssv683545,nssv688128,nssv655915,nssv677458,nssv669347,nssv688619,nssv675849,nssv655671,nssv691145,nssv658565,nssv679958,nssv674616,nssv682989,nssv666699,nssv654546,nssv655831,nssv692362,nssv687482,nssv659824,nssv676558,nssv689203,nssv680232,nssv675838,nssv691461,nssv684480,nssv659906,nssv672848,nssv680413,nssv681584,nssv667472,nssv681958,nssv669628,nssv690524,nssv691168,nssv684107,nssv668138,nssv684324,nssv681816,nssv682965,nssv678603,nssv686996,nssv689831,nssv676785,nssv685011,nssv675817,nssv672952,nssv669651,nssv670565,nssv658544,nssv677796,nssv676271,nssv665937,nssv654817,nssv658843,nssv660632,nssv673932,nssv666241,nssv688285,nssv691208,nssv654262,nssv654104,nssv669715,nssv659640,nssv678248,nssv679846,nssv670698,nssv659689,nssv653890,nssv693518,nssv670892,nssv682157,nssv690502,nssv677755,nssv651828,nssv676832,nssv677411,nssv678354,nssv676594,nssv660107,nssv672455,nssv663989,nssv692300,nssv668232,nssv671350,nssv691822,nssv683007,nssv674937,nssv654528,nssv685274,nssv668438,nssv682852,nssv654483,nssv682831,nssv668280,nssv672328,nssv680247,nssv690705,nssv685073,nssv691779,nssv671500,nssv677646,nssv686341,nssv689342,nssv672475,nssv659385,nssv656077,nssv683486,nssv691297,nssv681703,nssv660904,nssv674008,nssv677625,nssv662608,nssv684764,nssv670290,nssv681652,nssv687118,nssv688403,nssv668296,nssv666034,nssv662840,nssv681024,nssv687978,nssv690537,nssv687194,nssv667756,nssv664536,nssv682030,nssv671432,nssv652984,nssv673243,nssv663631,nssv692615,nssv653581,nssv679145,nssv689874,nssv688373,nssv691287,nssv671969,nssv673069,nssv685951,nssv658790,nssv653164,nssv690960,nssv663380,nssv662704,nssv687801,nssv666216,nssv665153,nssv662936,nssv663818,nssv655777,nssv662211,nssv670808,nssv657211,nssv652877,nssv654870,nssv675747,nssv666977,nssv681008,nssv691049,nssv679668,nssv655592,nssv681142,nssv687056,nssv665634,nssv685715,nssv679982,nssv683403,nssv652372,nssv661613,nssv680172,nssv657170,nssv659091,nssv678332,nssv664372,nssv673516,nssv682643,nssv689957,nssv671832,nssv693476,nssv670394,nssv693354,nssv673114,nssv668083,nssv658938,nssv679246,nssv652726,nssv692678,nssv674148,nssv688348,nssv687161,nssv678495,nssv665955,nssv665309,nssv675416,nssv666634,nssv676667,nssv668185 M 2026 5 430 "" nsv508283 4 64514095 64544584 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622486 S 4 0 1 "" NA18994 nsv10511 4 64522682 64551959 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12339,nssv29017,nssv14190,nssv11555,nssv13178,nssv11676,nssv11887,nssv29168,nssv11902,nssv12324,nssv12214,nssv11732 M 31 0 12 Samples from several populations that are part of the HapMap project. "" NA07029,NA10839,NA10847,NA10863,NA11830,NA12155,NA12740,NA12802,NA12872,NA18942,NA18975,NA19221 nsv442906 4 64526235 64536989 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv437920 4 64526550 64538394 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv468313,nssv468326,nssv468324,nssv468321,nssv468299,nssv468329,nssv468314,nssv468309,nssv468318,nssv468302,nssv468306,nssv468312,nssv468310,nssv468317,nssv468307,nssv468322,nssv468325,nssv468300,nssv468304,nssv468311,nssv468316,nssv468301,nssv468328,nssv468320,nssv468315,nssv468327,nssv468305,nssv468303,nssv468323 M 269 0 17 Samples from several populations that are part of the HapMap project. "" NA06991,NA06993,NA07019,NA07056,NA10847,NA12154,NA12234,NA12239,NA12249,NA12740,NA12750,NA12761,NA12762,NA12864,NA12872,NA18542,NA18995 dgv655n27 4 64527945 64538394 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv461424,nsv461511,nsv461416,nsv461411,nsv461431,nsv461512,nsv461476,nsv461515,nsv461437,nsv461445,nsv461451,nsv461441,nsv461495,nsv461518,nsv461435,nsv461481,nsv461466,nsv461500,nsv461493,nsv461454,nsv461429,nsv461405,nsv461460,nsv461401,nsv461457,nsv461482,nsv461418,nsv461400,nsv461447,nsv461490,nsv461474,nsv461440,nsv461403,nsv461427,nsv461399,nsv461504,nsv461419,nsv461421,nsv461501,nsv461497,nsv461502,nsv461456,nsv461480,nsv461446,nsv461423,nsv461492,nsv461412,nsv461463,nsv461407,nsv461514,nsv461420,nsv461452,nsv461498,nsv461443,nsv461485,nsv461408,nsv461438,nsv461404,nsv461426,nsv461444,nsv461430,nsv461509,nsv461503,nsv461489,nsv461510,nsv461459,nsv461467,nsv461516,nsv461507,nsv461402,nsv461422,nsv461436,nsv461488,nsv461433,nsv461434,nsv461458,nsv461469,nsv461475,nsv461513,nsv461508,nsv461432,nsv461487,nsv461473,nsv461415,nsv461449,nsv461455,nsv461486,nsv461468,nsv461413,nsv461410,nsv461414,nsv461462,nsv461453,nsv461409,nsv461496,nsv461442,nsv461448,nsv461425,nsv461477,nsv461479,nsv461478,nsv461470,nsv461491,nsv461464,nsv461499,nsv461465,nsv461471,nsv461484 M 1557 0 108 "" 1780854130_A,1780854215_A,1780854257_A,1780854293_A,1780854296_A,1780854392_A,1780854522_A,1780854524_A,1780854525_A,1780854584_A,1780862057_A,1780862100_A,1780862202_A,1780862207_A,1780862246_A,1780862276_A,1780862300_A,1780862345_A,1780862394_A,1780862469_A,1780862551_A,1780862557_A,1780862559_A,1780862595_A,1780862599_A,1782681176_A,1782681179_A,1782681275_A,1788485588_A,1798860102_A,1798860108_A,1798860567_A,HGDP00021,HGDP00029,HGDP00080,HGDP00094,HGDP00096,HGDP00139,HGDP00153,HGDP00165,HGDP00267,HGDP00304,HGDP00520,HGDP00526,HGDP00537,HGDP00597,HGDP00671,HGDP00702,HGDP00706,HGDP00708,HGDP00710,HGDP00713,HGDP00771,HGDP00849,HGDP00852,HGDP00855,HGDP00857,HGDP00861,HGDP00862,HGDP00863,HGDP00864,HGDP00865,HGDP00868,HGDP00872,HGDP00875,HGDP00882,HGDP00893,HGDP00897,HGDP00901,HGDP00945,HGDP00952,HGDP00956,HGDP00957,HGDP00995,HGDP00998,HGDP00999,HGDP01003,HGDP01014,HGDP01015,HGDP01018,HGDP01019,HGDP01044,HGDP01047,HGDP01077,HGDP01163,HGDP01186,HGDP01209,HGDP01216,HGDP01255,HGDP01361,HGDP01365,NINDS_112,NINDS_114,NINDS_117,NINDS_136,NINDS_159,NINDS_170,NINDS_186,NINDS_19,NINDS_197,NINDS_219,NINDS_235,NINDS_251,NINDS_260,NINDS_50,NINDS_69,NINDS_72,NINDS_92 nsv818238 4 64527945 64538394 CNV Gain+Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415892,nssv1415834,nssv1418060,nssv1417599,nssv1415944,nssv1415633,nssv1415893,nssv1416051,nssv1416147,nssv1417383,nssv1417018,nssv1415946,nssv1417475,nssv1418358,nssv1415634,nssv1418061,nssv1417016,nssv1417353,nssv1415566,nssv1415833,nssv1416052,nssv1418357,nssv1418360,nssv1417361,nssv1417332,nssv1417338,nssv1417015,nssv1415568,nssv1417227,nssv1417116,nssv1416728,nssv1415835,nssv1415567,nssv1415635,nssv1415945,nssv1417284,nssv1417182,nssv1417372,nssv1415891,nssv1417136,nssv1416148 M 112 9 32 "" NA06985,NA06991,NA06993,NA06994,NA07000,NA07029,NA10830,NA10835,NA10847,NA10859,NA10860,NA10861,NA10863,NA11881,NA11992,NA11993,NA11994,NA11995,NA12044,NA12146,NA12154,NA12234,NA12236,NA12239,NA12248,NA12249,NA12264,NA12740,NA12750,NA12751,NA12801,NA12813,NA12891,NA12892,NA18542,NA18550,NA18608,NA18609,NA18612,NA18960,NA18978 dgv656n27 4 64533059 64538394 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv461527,nsv461521,nsv461522,nsv461525,nsv461519,nsv461524,nsv461520,nsv461526,nsv461523 M 1557 0 9 "" 1780854058_A,1780854118_A,1780862075_A,1780862194_A,1780862404_A,1780862579_A,HGDP00189,HGDP00786,NINDS_172 nsv829951 4 64662225 64840190 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443681,nssv1443680 M 95 0 2 "" nsv522453 4 64712502 64722564 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705816 S 2026 1 0 "" nsv829952 4 64808708 64963654 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443682 S 95 1 0 "" nsv508284 4 64889992 64899352 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622487 S 4 0 1 "" NA18994 nsv523690 4 64931422 64941316 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699496 S 2026 0 1 "" nsv291771 4 65028224 65028553 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310349 M 24 "" nsv509904 4 65042067 65048067 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622055,nssv621234,nssv618169 M 4 0 3 "" CHM,NA10860,NA15510 nsv292154 4 65073382 65075743 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310732 M 24 "" nsv507171 4 65093442 65099442 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617633,nssv620246,nssv621748 M 4 3 0 "" CHM,NA10860,NA15510 nsv829953 4 65261340 65392245 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443683 S 95 1 0 "" nsv437382 4 65333480 65342860 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467263 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19208 nsv461530 4 65336459 65364236 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537913 S 1557 0 1 "" 1780854495_A nsv4362 4 65407967 65428867 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3129 S 9 1 0 "" NA18555 nsv437383 4 65646934 65672606 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467264 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19202 nsv441882 4 65648733 65668784 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv293792 4 65669829 65669829 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv312370 M 24 "" nsv292057 4 65739748 65739748 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310635 M 24 "" nsv4363 4 65774899 65819556 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7964 S 9 0 1 "" NA12156 nsv829954 4 65802690 65950858 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443685,nssv1443686 M 95 0 2 "" nsv516455 4 65998409 66005540 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv673494,nssv668516 M 2026 0 2 "" nsv509905 4 66054402 66060402 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623947 S 4 0 1 "" NA18994 nsv507172 4 66092021 66098021 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621749,nssv622893,nssv617634,nssv620247 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv290967 4 66193479 66193552 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309545 M 24 "" nsv818239 4 66210347 66212196 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417855 S 112 1 0 "" NA18852 esv2422517 4 66277312 66388660 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161248 S 181 1 0 "" ND01672 nsv291171 4 66298568 66298568 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309749 M 24 "" nsv291266 4 66298572 66298572 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309844 M 24 "" nsv291906 4 66366932 66371452 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310484 M 24 "" nsv818240 4 66400623 66433995 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415836 S 112 1 0 "" NA10860 dgv1624e1 4 66400764 66474947 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv25139,essv21092,esv1296 M 271 0 0 "" NA10854,NA11839 nsv523673 4 66407818 66433995 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699477 S 2026 1 0 "" nsv519377 4 66412756 66457741 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv685746,nssv676202,nssv673420,nssv658444,nssv659943,nssv655759,nssv658953,nssv681770,nssv661045,nssv661589 M 2026 10 0 "" dgv657n27 4 66415467 66457741 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv461535,nsv461541,nsv461537,nsv461536,nsv461540,nsv461538,nsv461534 M 1557 7 0 "" 1780862373_A,1780862517_A,HGDP00537,HGDP00538,HGDP01368,HGDP01403,NINDS_240 nsv441883 4 66417317 66458531 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv829955 4 66443562 66577479 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443687 S 95 1 0 "" dgv149n6 4 66469876 66470195 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv290426,nsv293484 M 24 "" nsv10512 4 66474942 66479350 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv29198,nssv12176,nssv13011 M 31 0 3 Samples from several populations that are part of the HapMap project. "" NA12872,NA18860,NA19007 nsv509005 4 66625816 66653535 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620788 S 4 1 0 "" NA15510 nsv441884 4 66631650 66634590 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv4364 4 66633153 66678410 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7965 S 9 0 1 "" NA12156 nsv507173 4 66633180 66639180 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621750 S 4 1 0 "" NA10860 nsv515894 4 66778241 66799164 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv686186,nssv675675,nssv678200,nssv667580,nssv670489,nssv686648,nssv657425,nssv692036,nssv663081,nssv655090,nssv679860,nssv672189,nssv688211,nssv671403,nssv684056,nssv665178,nssv680891 M 2026 0 17 "" nsv818241 4 66778241 66799164 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417857,nssv1417856 M 112 0 2 "" NA18852,NA18854 nsv519011 4 66778241 66816409 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694297 S 2026 0 1 "" nsv829956 4 66859522 67042042 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443688 S 95 0 1 "" nsv290780 4 66946461 66946579 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309358 M 24 "" nsv528212 4 67102901 67187663 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704773 S 2026 1 0 "" nsv829957 4 67118584 67315593 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443689,nssv1443690 M 95 2 0 "" nsv509906 4 67140487 67146487 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621235,nssv618170 M 4 0 2 "" CHM,NA15510 nsv441885 4 67209367 67221729 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv437384 4 67533844 67540663 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467265 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19202 nsv4366 4 67547137 67592378 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2469 S 9 0 1 "" NA18555 nsv4367 4 67573373 67602242 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7090 S 9 1 0 "" NA12156 nsv7362 4 67639441 67682678 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7091 S 9 0 0 "" NA12156 nsv4368 4 67667140 67697482 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10407 S 9 1 0 "" NA18956 nsv4369 4 67745841 67764634 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7967 S 9 0 1 "" NA12156 nsv829958 4 67830677 68008031 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443691 S 95 1 0 "" nsv520302 4 67934872 67945305 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697336 S 2026 0 1 "" nsv4370 4 67939417 67967665 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3260 S 9 1 0 "" NA12878 nsv525716 4 68066728 68069847 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701878 S 2026 0 1 "" nsv829960 4 68478003 68638395 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443692 S 95 0 1 "" nsv10513 4 68586837 68603312 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13302 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18502 dgv1625e1 4 68605772 68857679 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv17362,essv11972,esv800 M 271 0 0 "" NA18517 nsv10514 4 68618281 68844652 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13184 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18517 esv35010 4 68619600 68846934 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6986830,essv6986829,essv6979253,essv6979254,essv6979255 M 771 1 0 "" NA18517 dgv658n27 4 68626146 68706342 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv461543,nsv461544,nsv461545,nsv461542 M 1557 0 4 "" HGDP00285,HGDP00313,HGDP00315,HGDP00333 nsv433367 4 68626146 68841767 CNV Gain Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463248 S 9 1 0 Samples from several populations that are part of the HapMap project. "" NA18517 nsv818242 4 68639903 68826919 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416433 S 112 1 0 "" NA18517 nsv469718 4 68647082 68804340 CNV Gain Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649739 M 265 6 0 Samples from several populations that are part of the HapMap project. "" nsv517749 4 68678143 68716617 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv655565,nssv653099 M 2026 0 2 "" nsv292405 4 68684734 68684734 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310983 M 24 "" dgv150n6 4 68865659 68865994 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv290475,nsv291339 M 24 "" nsv4371 4 68875403 68910386 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7092 S 9 0 1 "" NA12156 nsv508285 4 68886041 68904992 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619935,nssv622488 M 4 0 2 "" NA15510,NA18994 nsv520487 4 68912719 68923963 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697448 S 2026 0 1 "" dgv1626e1 4 68998845 69318438 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv10522,essv1658,essv7467,essv204,essv9921,essv5685,essv2908,essv7261,essv4516,essv97,essv732,essv594,essv3842,essv3618,essv7672,essv3941 M 271 0 0 "" NA18605,NA18620,NA18623,NA18633,NA18635,NA18940,NA18947,NA18953,NA18961,NA18966,NA18970,NA18994,NA19005,NA19007,NA19145,NA19240 dgv1627e1 4 68998845 69892781 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1318,essv21299,essv7624,essv14872,essv8795,essv3487,essv15281,essv12334,essv12637,essv16503,essv25003,essv2126,essv8292,essv20312,essv17018,essv21793,essv8738,essv10767,essv15077,essv7493,essv14614,essv22915,essv12858,essv15552,essv10906,essv18388,essv9099,essv24726,essv16139,essv13722,essv12492,essv11115,essv14564,essv15426,essv11663,essv15492,essv6538,essv10438,essv14766,essv24892,essv15783,essv14326,essv23338,essv6476,essv20885,essv9339,essv24513,essv13440,essv13051,essv11544,essv12414,essv19158,essv14422,essv16457,essv13021,essv23889,essv23771,essv21232,essv19577,essv5076,essv19164,essv15671,essv9747,essv18276,essv18119,essv1179,essv20603,essv5559,essv9407,essv19019,essv16010,essv22363,essv23545,essv11917,essv12213,essv8437,essv23611,essv8084,essv17480,essv11259,essv1694,essv18426,essv10325 M 271 0 0 "" NA06993,NA07000,NA07056,NA10839,NA10846,NA10855,NA11829,NA11830,NA11831,NA11993,NA12005,NA12006,NA12236,NA12239,NA12249,NA12750,NA12760,NA12762,NA12763,NA12801,NA12802,NA12812,NA12814,NA12864,NA12865,NA12875,NA18500,NA18501,NA18502,NA18505,NA18506,NA18508,NA18515,NA18516,NA18522,NA18523,NA18529,NA18547,NA18561,NA18570,NA18611,NA18636,NA18852,NA18853,NA18859,NA18912,NA18913,NA18951,NA18959,NA18968,NA18973,NA18999,NA19092,NA19093,NA19094,NA19100,NA19101,NA19103,NA19119,NA19120,NA19129,NA19131,NA19132,NA19137,NA19138,NA19139,NA19144,NA19154,NA19159,NA19173,NA19192,NA19194,NA19201,NA19202,NA19203,NA19204,NA19206,NA19207,NA19208,NA19209,NA19210,NA19211,NA19238 dgv1628e1 4 68998845 70594932 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv16886,essv8212,essv13887,esv512,essv14071,essv17178,essv19453 M 271 0 0 "" NA11840,NA18854,NA18861,NA19116,NA19171,NA19205 dgv88n17 4 69033521 69212123 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437385,nsv437386 M 60 0 2 "" NA18872,NA19202 essv23402 4 69075001 69230647 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA10854 dgv1629e1 4 69075001 69296476 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv14392,essv22467,essv17458,essv6574,essv19752,essv10249,essv11803,essv23836,essv18096,essv1998,essv20305,essv4583,essv22967,essv18610,essv2488,essv21825,essv22141,essv22031,essv24300,essv24373,essv20093,essv23177,essv13736,essv7763,essv911,essv19634,essv5912,essv24790,essv6363,essv20108,essv22625,essv23658,essv9617,essv8644,essv23481,essv20800,essv20175,essv288,essv17600,essv4387,essv10998,essv24047,essv3210,essv14167,essv21737,essv24918,essv22527,essv16328,essv19217,essv21052,essv23088,essv18862,essv17666,essv5167,essv17322,essv8931,essv22478,essv11439,essv8355,essv9104,essv24583,essv16716,essv21406,essv15349,essv21124,essv21459,essv9823,essv18341,essv15018,essv19092,essv10879,essv16733,essv17707,essv17897,essv11982,essv12720,essv21562,essv13201,essv18759,essv10407,essv1451,essv3416,essv23144,essv217,essv5135,essv24123,essv15826,essv4161,essv22814,essv2214,essv17246,essv22744,essv3533,essv6984,essv21978,essv11769,essv22187,essv10173,essv13627,essv11841 M 271 0 0 "" NA06991,NA06994,NA07019,NA07022,NA07034,NA07048,NA07055,NA07345,NA07348,NA07357,NA10835,NA10838,NA10847,NA10856,NA10857,NA10859,NA10860,NA10863,NA11832,NA11839,NA11881,NA11882,NA11992,NA11994,NA11995,NA12003,NA12004,NA12043,NA12044,NA12144,NA12145,NA12146,NA12154,NA12155,NA12156,NA12234,NA12248,NA12707,NA12717,NA12740,NA12751,NA12752,NA12753,NA12761,NA12812,NA12815,NA12872,NA12873,NA12874,NA12891,NA18503,NA18504,NA18507,NA18517,NA18521,NA18524,NA18542,NA18550,NA18555,NA18564,NA18573,NA18577,NA18609,NA18612,NA18621,NA18856,NA18857,NA18858,NA18860,NA18862,NA18863,NA18870,NA18871,NA18872,NA18914,NA18944,NA18945,NA18948,NA18949,NA18960,NA18965,NA18974,NA18978,NA19000,NA19003,NA19102,NA19127,NA19130,NA19140,NA19141,NA19142,NA19143,NA19152,NA19153,NA19193,NA19200,NA19221,NA19222,NA19223,NA19239 dgv1630e1 4 69075001 70167250 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv9996,essv10631,essv9206 M 271 0 0 "" NA18855,NA19099,NA19128 nsv442909 4 69110971 69116908 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv10515 4 69169451 69171657 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13214 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18517 nsv508286 4 69184884 69755029 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622489,nssv619936,nssv618738 M 4 0 3 "" NA10860,NA15510,NA18994 nsv442910 4 69189254 69314745 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv10516 4 69200937 69382191 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13513,nssv13257,nssv13483,nssv13227,nssv12238,nssv14220,nssv12399,nssv13304,nssv12274,nssv12483,nssv29047,nssv12468,nssv11471,nssv11796,nssv11585,nssv13274,nssv11736,nssv13041,nssv13071,nssv12571,nssv12369,nssv11947,nssv12453,nssv12378,nssv13453,nssv11917,nssv11822,nssv12208,nssv12080,nssv12689,nssv12541,nssv14250,nssv11792,nssv12140,nssv12244,nssv13238,nssv11852,nssv12719,nssv13208,nssv13244,nssv12459,nssv12408,nssv12304,nssv13332,nssv29228,nssv11706 M 31 21 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10847,NA10863,NA11830,NA12155,NA12740,NA12802,NA12872,NA18502,NA18504,NA18517,NA18564,NA18853,NA18860,NA19132,NA19144,NA19173,NA19221,NA19240 esv33605 4 69203523 69319735 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100801,essv94373,essv97057,essv95695,essv95463,essv99042,essv93607,essv100104,essv93401 M 51 0 9 "" 21656,21808,21817,21841,21847,21938,21972,22086,22170 dgv1631e1 4 69203585 69318438 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1084,essv1673,essv24612,essv21931,essv6509,essv955,essv1800,essv5986,essv6548,essv7651,essv4335,essv3603 M 271 0 0 "" NA12057,NA12875,NA18552,NA18572,NA18622,NA18624,NA18632,NA18969,NA18971,NA18981,NA18990,NA18992 dgv1632e1 4 69203585 69812428 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv18686,essv13996,essv6424,essv1546,essv23170,essv20492,essv16588,essv20679,essv19849,essv18047,essv6450,essv1980,essv19347,essv1060,essv18014,essv25061 M 271 0 0 "" NA06985,NA06993,NA10831,NA12056,NA12234,NA12802,NA12874,NA12878,NA12892,NA18545,NA18592,NA18860,NA18942,NA18975,NA19012,NA19098 nsv509907 4 69210107 69216107 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618171,nssv621236 M 4 0 2 "" CHM,NA15510 dgv26n14 4 69222268 69326042 CNV Loss Cooper et al 2008 18776910 SNP_array nsv433219,nsv433220 M 9 0 2 "" NA12156,NA18555 dgv89n17 4 69232596 69277100 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv436940,nsv436939 M 60 0 2 "" NA12707,NA12801 nsv436941 4 69253957 69271860 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv466822 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA10846 dgv91n17 4 69253957 69293477 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437390,nsv436942 M 60 0 2 "" NA10857,NA18500 nsv433465 4 69270280 69309359 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463346 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA12878 nsv436943 4 69271860 69287925 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv466824 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA12740 nsv10518 4 69670283 69734219 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv29077,nssv12364,nssv13131,nssv13543,nssv11501,nssv12498,nssv13364,nssv12513,nssv12601,nssv11977,nssv12268,nssv13287,nssv11615,nssv13334,nssv12170,nssv11826,nssv13161,nssv12528,nssv12519,nssv11912,nssv12749,nssv14280,nssv13268,nssv12334,nssv12489,nssv11882 M 31 20 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10847,NA10863,NA11830,NA12155,NA12740,NA12802,NA12872,NA18504,NA18517,NA18564,NA18853,NA18860,NA19132,NA19144,NA19173,NA19221,NA19240 nsv471430 4 69693104 69717150 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548258,nssv548260,nssv548259 M 3 "" nsv829961 4 69736413 69876227 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443693 S 95 0 1 "" nsv509006 4 69743422 69755029 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619375 S 4 1 0 "" NA10860 essv17788 4 69745830 70448849 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA10831 essv6528 4 69831620 69840498 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18611 nsv441886 4 69859655 69897975 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv461547 4 69864881 69887033 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537926 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00648 dgv1633e1 4 69865808 69928319 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv9547,essv17218 M 271 0 0 "" NA18857,NA18861 essv17383 4 69866242 69890231 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18855 nsv523860 4 69884287 69887033 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699696 S 2026 0 1 "" nsv521812 4 69884287 69896705 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694583 S 2026 1 0 "" nsv518690 4 69933228 69953454 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696141 S 2026 0 1 "" nsv4372 4 69945259 69990875 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7093 S 9 0 1 "" NA12156 dgv1634e1 4 69956171 70594932 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv11284,essv312,essv6116,essv18384,essv7099,essv22206,essv20007,essv24771,essv22097,essv22549,essv16626,essv24258,essv6590,essv24819,essv6912,essv24656,essv23066,essv17315,essv5367,essv15328,essv9682,essv15412,essv1211,essv21145,essv23425 M 271 0 0 "" NA07000,NA07048,NA07348,NA10854,NA10856,NA10860,NA11829,NA12044,NA12154,NA12249,NA12812,NA12815,NA18532,NA18537,NA18563,NA18605,NA18621,NA18856,NA18862,NA18913,NA18951,NA18978,NA19142,NA19203,NA19204 nsv829962 4 69967629 70091043 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443694 S 95 1 0 "" nsv10519 4 69997260 70016699 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12200 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18853 nsv10520 4 70032990 70036761 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12145 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18980 essv22808 4 70043934 70082367 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12753 nsv10521 4 70061192 70063983 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13317 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19132 nsv10522 4 70089010 70090828 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12175 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18980 nsv4373 4 70093043 70126667 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7968 S 9 1 0 "" NA12156 dgv1635e1 4 70110461 70448849 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv23979,essv8867,essv701,essv22638,essv18200,essv1484,essv14277,essv11971,essv2596,essv15553,essv61,essv3891,essv1233,essv4185,essv1748,essv22423,essv22109,essv24434,essv1378,essv19638,essv7571,essv22779,essv14373,essv2817,essv18602,essv16433,essv2329,essv23183,essv4123,essv15062,essv23479,essv17028,essv17634,essv6744,essv23902,essv10046,essv12335,essv6315,essv2496,essv23689,essv5162,essv5928,essv4703,essv7347,essv20804,essv4266,essv4591,essv18445,essv4404,essv14973,essv19001,essv4742,essv21278,essv19790,essv20198,essv11502,essv4908,essv17448,essv4045,essv23797,essv7220,essv19227,essv6281,essv4666,essv21867,essv4966,essv20951,essv13079,essv24519,essv9354,essv17646,essv7863,essv23247,essv23354,essv20219,essv1040,essv11458,essv19954,essv20411,essv16163,essv7430,essv21185,essv8962,essv18114,essv19084,essv9787,essv24575,essv24978,essv18347,essv16779,essv15633,essv6392,essv17704,essv17099,essv8098,essv21531,essv21392,essv339,essv17542,essv18699,essv6010,essv1638,essv3800,essv8613,essv20607,essv12400,essv22463,essv22836,essv3359,essv5200,essv14736,essv10521,essv23524,essv3480,essv24939,essv6965,essv22978,essv5130,essv3754,essv23585,essv9628,essv2232,essv5025,essv2669,essv5455,essv3092,essv4006 M 271 0 0 "" NA06993,NA06994,NA07019,NA07029,NA07034,NA07055,NA07056,NA07357,NA10830,NA10835,NA10838,NA10839,NA10855,NA10857,NA10861,NA10863,NA11830,NA11831,NA11832,NA11839,NA11881,NA11992,NA11993,NA11994,NA12004,NA12005,NA12006,NA12043,NA12057,NA12144,NA12146,NA12155,NA12156,NA12234,NA12707,NA12716,NA12740,NA12750,NA12752,NA12753,NA12761,NA12762,NA12763,NA12801,NA12802,NA12813,NA12814,NA12872,NA12873,NA12874,NA18507,NA18508,NA18517,NA18524,NA18526,NA18545,NA18547,NA18550,NA18555,NA18558,NA18561,NA18562,NA18564,NA18570,NA18571,NA18572,NA18573,NA18576,NA18577,NA18582,NA18594,NA18603,NA18609,NA18611,NA18620,NA18622,NA18623,NA18632,NA18635,NA18636,NA18637,NA18852,NA18853,NA18857,NA18863,NA18870,NA18872,NA18912,NA18940,NA18942,NA18943,NA18945,NA18961,NA18966,NA18967,NA18969,NA18970,NA18971,NA18975,NA18980,NA18987,NA18990,NA18991,NA18992,NA18994,NA18995,NA18997,NA19003,NA19005,NA19007,NA19099,NA19100,NA19129,NA19137,NA19138,NA19139,NA19141,NA19144,NA19159,NA19172,NA19173,NA19194,NA19200,NA19206,NA19238,NA19239,NA19240 dgv1636e1 4 70110461 70594932 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv19557,essv2476 M 271 0 0 "" NA12864,NA18999 nsv522091 4 70113347 70169138 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694863 S 2026 0 1 "" nsv10523 4 70114252 70115790 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14003 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18972 nsv519544 4 70184723 70248611 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv678103,nssv656809,nssv658264,nssv685967,nssv704170,nssv690741 M 2026 5 1 "" dgv1637e1 4 70200693 70479481 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv18689,essv13207,essv14829,essv17361,essv14926,essv24445,essv25079,essv2750 M 271 0 0 "" NA12056,NA12865,NA12892,NA18517,NA18965,NA19119,NA19120,NA19129 nsv10524 4 70202229 70475019 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11957,nssv13454,nssv12007,nssv11932,nssv12354,nssv13347,nssv13298,nssv29236,nssv12298,nssv13603,nssv13394,nssv12549,nssv13328,nssv12543,nssv12558,nssv29206,nssv11942,nssv12205,nssv12230,nssv12235,nssv12394,nssv11645,nssv12206,nssv13633,nssv11925,nssv29107,nssv11531,nssv12631,nssv13377,nssv13573,nssv12809,nssv11856 M 31 23 2 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10847,NA10863,NA11830,NA12155,NA12740,NA12802,NA12872,NA18504,NA18517,NA18537,NA18563,NA18564,NA18572,NA18853,NA18942,NA18975,NA18980,NA19007,NA19132,NA19144,NA19173,NA19240 dgv17n31 4 70210001 70362484 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis nsv471335,nsv471334 M 3 "" essv5980 4 70213285 70391165 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18552 nsv482088 4 70246807 70261209 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558449 S 1 1 0 "" KB1 nsv509007 4 70264852 70275522 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620790 S 4 1 0 "" NA15510 dgv1638e1 4 70269361 70479481 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv18800,essv8392,essv13281,essv629,essv22735,essv13960,essv593,essv3334,essv18564,essv1692 M 271 0 0 "" NA10851,NA12239,NA12248,NA18947,NA18948,NA18968,NA18998,NA19093,NA19160,NA19201 nsv437922 4 70277690 70408180 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv468472,nssv468490,nssv468480,nssv468479,nssv468476,nssv468466,nssv468471,nssv468484,nssv468468,nssv468473,nssv468486,nssv468475,nssv468477,nssv468478,nssv468467,nssv468481,nssv468482,nssv468469,nssv468492,nssv468470,nssv468483,nssv468489,nssv468487,nssv468491,nssv468488 M 269 0 24 Samples from several populations that are part of the HapMap project. "" NA12865,NA12875,NA18503,NA18504,NA18508,NA18516,NA18912,NA18947,NA18965,NA19093,NA19094,NA19101,NA19103,NA19119,NA19129,NA19143,NA19145,NA19153,NA19160,NA19201,NA19207,NA19208,NA19221,NA19222 dgv1639e1 4 70295215 70391165 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv8662,essv992,essv518,essv5615 M 271 0 0 "" NA18593,NA18952,NA18964,NA19101 dgv1640e1 4 70295215 70427072 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2550,essv19721,essv20535,essv12915,essv14680,essv3907,essv14933,essv19348,essv2941,essv8261,essv6553,essv16609,essv24362,essv8687,essv13243,essv2710,essv7058,essv18789,essv945,essv2115 M 271 0 0 "" NA06985,NA10839,NA11995,NA12236,NA12891,NA18612,NA18624,NA18912,NA18944,NA18949,NA18959,NA18960,NA18972,NA18974,NA19094,NA19131,NA19132,NA19145,NA19153,NA19208 nsv469562 4 70297433 70456547 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649674 M 265 0 65 Samples from several populations that are part of the HapMap project. "" nsv471625 4 70297434 70456547 CNV Loss Sharp et al 2005 15918152 BAC_aCGH,FISH Eichler Segmental Duplication BAC array nssv549308,nssv549291,nssv549307,nssv549305,nssv549290,nssv549288,nssv549286,nssv549287,nssv549296,nssv549289,nssv549298,nssv549306,nssv549292,nssv549302,nssv549294,nssv549309,nssv549301,nssv549304,nssv549293,nssv549297,nssv549295,nssv549300,nssv549299,nssv549303,nssv549285 M 48 0 25 "" JK1058,JK1061,JK1688,JK776,NA10469,NA10470,NA10492,NA10493,NA10494,NA10495,NA10496,NA10967,NA10970,NA10971,NA10976,NA10979,NA11323,NA11521,NA11523,NA16689,NA17015,NA17051,NA17052,NA17058,P86GA nsv4374 4 70298288 70432262 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4749 S 9 0 1 "" NA19129 nsv436948 4 70301459 70329590 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv466829 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA12865 esv33234 4 70305890 70354107 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100675,essv98415 M 51 2 0 "" 21656,22352 nsv510922 4 70306631 70439456 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618635 S 4 0 0 "" CHM nsv442911 4 70308404 70419860 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" essv948 4 70315100 70364045 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18981 nsv436949 4 70329590 70352698 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv466830 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA12865 esv33154 4 70334654 70446610 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98299 S 51 0 1 "" 21772 nsv507174 4 70343448 70349448 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621751,nssv620249 M 4 2 0 "" NA10860,NA15510 nsv433466 4 70352040 70393048 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463347 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA19129 nsv526160 4 70352040 70442506 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702419 S 2026 1 0 "" nsv526929 4 70352040 70456237 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703296 S 2026 0 1 "" dgv92n17 4 70352698 70413729 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv436951,nsv436950 M 60 0 2 "" NA12865,NA12878 nsv4375 4 70402089 70405172 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10408 S 9 1 0 "" NA18956 nsv507175 4 70429254 70435254 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620250,nssv621752 M 4 2 0 "" NA10860,NA15510 nsv516069 4 70442506 70478652 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv685383,nssv681088,nssv673797,nssv684576,nssv655737,nssv658214,nssv682609,nssv666005,nssv675736,nssv682356,nssv679092,nssv661695,nssv668683,nssv705322 M 2026 1 13 "" nsv461548 4 70442506 70564751 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537927 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00058 nsv510892 4 70559705 70659225 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618605 S 4 0 0 "" CHM nsv293149 4 70594434 70594434 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311727 M 24 "" nsv507176 4 70598707 70604707 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620251 S 4 1 0 "" NA15510 nsv4377 4 70625228 70684855 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4750,nssv9395,nssv7094 M 9 0 3 "" NA12156,NA18517,NA19129 esv33983 4 70646331 70655098 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100631,essv98278,essv94396,essv96952,essv95731,essv99033,essv93661,essv97191,essv93304,essv98385 M 51 9 1 "" 21656,21772,21808,21817,21841,21938,21972,22075,22170,22352 nsv521416 4 70669120 70697431 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698026 S 2026 0 1 "" dgv659n27 4 70669120 70702515 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv461551,nsv461549 M 1557 0 2 "" HGDP00098,HGDP00567 nsv461552 4 70669120 70728013 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537931 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00134 nsv292823 4 70679380 70682306 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311401 M 24 "" nsv4378 4 71119895 71171760 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3261,nssv3130 M 9 2 0 "" NA12878,NA18555 nsv521934 4 71136902 71162771 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694703 S 2026 0 1 "" nsv517703 4 71149017 71263969 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv678080,nssv686114,nssv671590,nssv652903,nssv693579,nssv685384,nssv687502,nssv663710,nssv663954,nssv687895,nssv683960,nssv669199 M 2026 0 12 "" nsv461553 4 71154287 71206308 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537932 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00934 nsv829963 4 71184021 71335869 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443699,nssv1443700,nssv1443698,nssv1443696,nssv1443697 M 95 5 0 "" nsv829964 4 71321248 71485702 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443701 S 95 1 0 "" nsv461554 4 71343263 71445932 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537933 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00615 dgv321n21 4 71343263 71476793 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv520156,nsv528620 M 2026 0 2 "" dgv1641e1 4 71396544 71418181 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv6049,essv5633 M 271 0 0 "" NA18579,NA18603 dgv1642e1 4 71396544 71502233 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv964,essv4323 M 271 0 0 "" NA18564 dgv187e55 4 71407313 71433001 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv35118,esv34365 M 771 0 2 "" NA18564,NA18623 esv34954 4 71407442 71418200 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6979609,essv6979610 M 771 0 1 "" NA18579 nsv10525 4 71407950 71430827 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12588 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18564 essv4514 4 71408876 71453801 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18623 nsv441887 4 71409025 71429808 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv517266 4 71409811 71417103 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv676642,nssv682578,nssv681876,nssv670103,nssv666700,nssv654162 M 2026 0 6 "" nsv518183 4 71504826 71510250 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695604 S 2026 0 1 "" nsv291166 4 71629811 71629811 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309744 M 24 "" nsv4379 4 71630325 71664127 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4751 S 9 1 0 "" NA19129 nsv829965 4 71858769 72037343 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443702 S 95 1 0 "" nsv4380 4 71951418 71985281 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7969 S 9 1 0 "" NA12156 nsv829966 4 72025577 72179916 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443704,nssv1443703 M 95 0 2 "" nsv4381 4 72068918 72104089 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv391 S 9 1 0 "" NA19240 nsv441888 4 72310989 72313499 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv516070 4 72311524 72313339 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv661332,nssv691392,nssv666006 M 2026 0 3 "" nsv4382 4 72536612 72581509 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7970 S 9 0 1 "" NA12156 nsv4383 4 72591475 72624236 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7095 S 9 1 0 "" NA12156 nsv523289 4 72706899 72713549 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699029 S 2026 0 1 "" nsv4384 4 72749555 72794982 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4752 S 9 0 1 "" NA19129 nsv525645 4 72826487 72832626 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701799 S 2026 0 1 "" nsv289841 4 72833220 72839244 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308419 M 24 "" nsv829967 4 72833301 72991132 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443705 S 95 0 1 "" nsv519903 4 72878213 72880439 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697116 S 2026 0 1 "" nsv437395 4 72997678 73001307 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467276 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19194 nsv518154 4 73050364 73221369 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694206 S 2026 0 1 "" dgv151n6 4 73194662 73195007 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv291119,nsv291736 M 24 "" nsv508287 4 73297244 73316968 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618739 S 4 0 1 "" NA10860 nsv518185 4 73318355 73326573 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695608 S 2026 0 1 "" nsv829968 4 73378384 73516984 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443707 S 95 1 0 "" dgv1643e1 4 73716212 73794632 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1215,essv11343 M 271 0 0 "" NA19128 dgv1644e1 4 73744406 73794632 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv11076,essv14920,essv10719,essv7912 M 271 0 0 "" NA18508,NA19129,NA19138,NA19239 nsv291650 4 73764353 73764353 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310228 M 24 "" nsv4385 4 73770929 73799295 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4753 S 9 0 1 "" NA19129 nsv289840 4 73783790 73783877 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308418 M 24 "" nsv441889 4 73785873 73790347 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv1645e1 4 73786405 73790347 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv10193,essv15931,essv14820 M 271 0 0 "" NA18515,NA18516,NA18870 essv9286 4 73786405 73794632 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19137 nsv829969 4 73789617 73956216 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443708 S 95 1 0 "" nsv527114 4 73893717 73898301 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703496 S 2026 0 1 "" dgv1646e1 4 74048053 74135413 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv931,essv19717,essv21469 M 271 0 0 "" NA10830,NA12236 nsv436952 4 74058567 74124152 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv466833 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA10830 nsv437923 4 74064101 74123685 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv468497,nssv468499,nssv468494,nssv468493,nssv468498,nssv468495 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA10830,NA12236 nsv818243 4 74073008 74123546 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415570,nssv1415569 M 112 0 2 "" NA10830,NA12236 nsv829971 4 74074788 74245486 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443709 S 95 1 0 "" nsv507177 4 74085031 74091031 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621753 S 4 1 0 "" NA10860 nsv523169 4 74117277 74485945 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698881 S 2026 1 0 "" nsv4386 4 74224584 74257528 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7096 S 9 1 0 "" NA12156 nsv4388 4 74493616 74518037 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7972 S 9 1 0 "" NA12156 nsv293440 4 74677340 74677403 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv312018 M 24 "" nsv292546 4 74847018 74849053 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311124 M 24 "" nsv437396 4 74917192 74926595 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467277 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19129 nsv519932 4 74920512 74921073 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv683961,nssv677678,nssv675031,nssv679736,nssv693916,nssv690413,nssv659540,nssv687530 M 2026 0 8 "" nsv4389 4 75055582 75087307 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2470 S 9 1 0 "" NA18555 nsv525980 4 75096561 75786822 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702199 S 2026 1 0 "" nsv290772 4 75112687 75112848 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309350 M 24 "" nsv507178 4 75116554 75122554 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621754,nssv620252,nssv622894 M 4 3 0 "" NA10860,NA15510,NA18994 nsv292833 4 75250026 75250135 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311411 M 24 "" nsv291565 4 75250202 75250268 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310143 M 24 "" esv33684 4 75307446 75310209 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98286 S 51 0 1 "" 21772 nsv437397 4 75442092 75460096 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467278 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19139 nsv441890 4 75446147 75447241 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv509908 4 75464778 75470778 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618172,nssv621237 M 4 0 2 "" CHM,NA15510 nsv290978 4 75594262 75596420 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309556 M 24 "" nsv508288 4 75753348 75763388 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618740 S 4 0 1 "" NA10860 nsv4390 4 75968606 76028938 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7098,nssv392,nssv3262,nssv9396,nssv10409,nssv4754,nssv9644 M 9 0 7 "" NA12156,NA12878,NA18507,NA18517,NA18956,NA19129,NA19240 nsv508289 4 75991496 76009341 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618741,nssv619937,nssv622490 M 4 0 3 "" NA10860,NA15510,NA18994 nsv7363 4 76029313 79914428 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4755 S 9 0 0 "" NA19129 nsv461556 4 76088527 76095971 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537934 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00542 nsv521652 4 76118675 76141653 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698270 S 2026 0 1 "" nsv526880 4 76468545 76491942 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703238 S 2026 1 0 "" nsv4391 4 76553068 76585641 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2471 S 9 1 0 "" NA18555 nsv461557 4 76570174 76720656 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537935 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01338 nsv292568 4 76852593 76856778 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311146 M 24 "" nsv509008 4 77029217 77048583 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620791 S 4 1 0 "" NA15510 nsv4392 4 77030588 77059430 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3263 S 9 1 0 "" NA12878 nsv293489 4 77297866 77297866 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv312067 M 24 "" nsv292553 4 77305790 77306051 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311131 M 24 "" nsv461558 4 77390904 77472732 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537936 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01280 nsv818244 4 77452010 77453956 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417600 S 112 0 1 "" NA18978 nsv516357 4 77524421 77535558 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv676966,nssv689048,nssv660633,nssv667757,nssv671859,nssv654969 M 2026 0 6 "" nsv461559 4 77550017 77561679 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537937 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00109 dgv1647e1 4 77621775 77812584 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv818,essv18080 M 271 0 0 "" NA12145 nsv441891 4 77646963 77649545 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv10526 4 77655370 77679563 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12046 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18552 essv12957 4 77749271 77812584 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19102 essv8045 4 77785190 77812511 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19103 nsv292270 4 77826293 77835558 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310848 M 24 "" nsv289572 4 77967716 77967716 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308150 M 24 "" nsv829972 4 77979715 78075945 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443710 S 95 0 1 "" nsv829973 4 78041430 78234540 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443712,nssv1443711 M 95 0 2 "" nsv526714 4 78123850 78125765 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703054 S 2026 0 1 "" nsv10527 4 78135441 78150165 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13484 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18517 dgv93n17 4 78137274 78151150 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437399,nsv437398 M 60 0 2 "" NA18515,NA19139 nsv441892 4 78139748 78144386 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv290177 4 78438535 78438863 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308755 M 24 "" nsv4393 4 78464649 78497850 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4756 S 9 1 0 "" NA19129 dgv153n6 4 78556401 78556456 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv291543,nsv290294 M 24 "" nsv289529 4 78593454 78593719 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308107 M 24 "" nsv829974 4 78597897 78772821 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443713 S 95 0 1 "" nsv471765 4 78626421 78626954 CNV Loss Hinds et al 2006 16327809 Oligo_aCGH,PCR Custom Perlegen arrays nssv646046 M 0.042 95 "" nsv441893 4 78633734 78638522 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" esv33812 4 78684915 78685224 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv95555 S 51 0 1 "" 21847 nsv4394 4 78737114 78770420 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv394 S 9 1 0 "" NA19240 nsv829975 4 78783389 78922377 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443714 S 95 1 0 "" nsv4395 4 78886619 78921745 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3264 S 9 1 0 "" NA12878 nsv461560 4 78892036 78920763 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537938 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01230 nsv829976 4 78933836 79114977 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443715 S 95 1 0 "" nsv518757 4 78994444 79052317 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696205 S 2026 0 1 "" esv2752050 4 79050490 79332500 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6988491,essv6982096,essv6982095,essv6986083,essv6986084 M 771 1 0 "" BEC_519 nsv516836 4 79106156 79339098 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv654330,nssv661580 M 2026 2 0 "" nsv290015 4 79116785 79116917 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308593 M 24 "" nsv4396 4 79292526 79337884 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7099 S 9 0 1 "" NA12156 nsv4397 4 79308775 79320384 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3265 S 9 1 0 "" NA12878 nsv520625 4 79359834 79428967 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697524 S 2026 1 0 "" nsv525530 4 79381703 79623742 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701665 S 2026 1 0 "" nsv829977 4 79439497 79467479 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443718,nssv1443716,nssv1443719 M 95 0 3 "" nsv829978 4 79501632 79649047 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443722,nssv1443721,nssv1443720 M 95 3 0 "" nsv291328 4 79516685 79516685 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309906 M 24 "" nsv818246 4 79541517 79579030 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417618 S 112 1 0 "" NA18978 nsv4399 4 79609011 79641750 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3266,nssv2472,nssv7100,nssv395,nssv4757 M 9 0 5 "" NA12156,NA12878,NA18555,NA19129,NA19240 nsv524023 4 79613452 79614889 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699885 S 2026 0 1 "" nsv508290 4 79616331 79635154 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619938,nssv617490,nssv622491,nssv618742 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv292160 4 79622394 79622448 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310738 M 24 "" nsv290709 4 79716357 79718346 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309287 M 24 "" nsv4400 4 79717353 79750934 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv396 S 9 1 0 "" NA19240 nsv508291 4 80118390 80130095 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618743 S 4 0 1 "" NA10860 nsv829979 4 80176347 80376338 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443723 S 95 1 0 "" nsv523154 4 80304349 80306255 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698862 S 2026 0 1 "" nsv293195 4 80466357 80467478 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311773 M 24 "" dgv154n6 4 80562908 80563250 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv293000,nsv291134 M 24 "" nsv829980 4 80799287 80825954 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443726,nssv1443725,nssv1443724 M 95 0 3 "" nsv521454 4 80955975 81011199 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698065 S 2026 0 1 "" nsv829983 4 80994921 81191491 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443727 S 95 1 0 "" nsv507179 4 81059021 81065021 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617635,nssv621755,nssv622895,nssv620254 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv508292 4 81240746 81259494 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622492,nssv619939,nssv617491 M 4 0 3 "" CHM,NA15510,NA18994 nsv291362 4 81245242 81251286 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309940 M 24 "" nsv529019 4 81518026 81543153 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705730 S 2026 1 0 "" dgv155n6 4 81659706 81660057 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv293197,nsv291660 M 24 "" nsv4401 4 81709457 81743201 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4758 S 9 1 0 "" NA19129 nsv528410 4 81759953 81768559 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705002 S 2026 0 1 "" nsv517603 4 82146749 82147390 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv656411,nssv652484 M 2026 0 2 "" nsv517072 4 82151004 82247529 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv687093,nssv656550,nssv667033,nssv664693,nssv673296,nssv696718,nssv684465,nssv684889,nssv681009,nssv690961,nssv656019,nssv679525,nssv665234,nssv668139,nssv657891,nssv673760,nssv691634,nssv661423,nssv656171,nssv693790,nssv675353,nssv687703,nssv658599,nssv670353,nssv651914,nssv660760,nssv690516,nssv653733,nssv654852,nssv674733,nssv662891,nssv654529,nssv671987,nssv681558,nssv670592 M 2026 0 35 "" nsv293578 4 82180757 82180822 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv312156 M 24 "" nsv525865 4 82221550 82252165 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702063 S 2026 0 1 "" nsv4402 4 82242425 82276436 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7973 S 9 1 0 "" NA12156 nsv521480 4 82298635 82300247 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698091 S 2026 0 1 "" nsv829984 4 82337167 82471156 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443729 S 95 1 0 "" nsv289899 4 82348695 82349015 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308477 M 24 "" nsv4403 4 82556057 82578347 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv397 S 9 1 0 "" NA19240 nsv829985 4 82556507 82710835 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443730 S 95 0 1 "" nsv517921 4 82672649 82704014 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695332 S 2026 1 0 "" nsv4404 4 82698165 82743327 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7974 S 9 0 1 "" NA12156 nsv829986 4 82702342 82867039 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443745,nssv1443751,nssv1443733,nssv1443742,nssv1443732,nssv1443749,nssv1443738,nssv1443731,nssv1443753,nssv1443734,nssv1443748,nssv1443744,nssv1443737,nssv1443750,nssv1443746,nssv1443735,nssv1443747,nssv1443743,nssv1443736 M 95 9 10 "" nsv526616 4 82791919 83575409 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702936 S 2026 1 0 "" esv33488 4 82982208 82985653 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98827 S 51 0 1 "" 21606 nsv829987 4 83119312 83141278 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443759,nssv1443755,nssv1443760,nssv1443754,nssv1443761,nssv1443762,nssv1443764,nssv1443771,nssv1443768,nssv1443767,nssv1443766,nssv1443765,nssv1443769,nssv1443770,nssv1443775,nssv1443756,nssv1443758,nssv1443773,nssv1443757,nssv1443772 M 95 0 20 "" nsv289341 4 83180923 83181038 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv307919 M 24 "" nsv290542 4 83286493 83288583 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309120 M 24 "" nsv461564 4 83306859 83424850 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537940 S 1557 1 0 "" 1780862563_A nsv290450 4 83501202 83501343 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309028 M 24 "" nsv829988 4 83595316 83767670 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443777,nssv1443776 M 95 0 2 "" nsv829989 4 83713818 83915066 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443778 S 95 0 1 "" nsv523539 4 83877077 83878441 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699316 S 2026 0 1 "" nsv292149 4 83987253 83990321 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310727 M 24 "" nsv517479 4 83992855 84000577 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv690872,nssv661450,nssv691393,nssv680892,nssv687718,nssv680095,nssv658232,nssv671787,nssv684280,nssv689519,nssv691488,nssv652485,nssv682610,nssv679810,nssv677512,nssv654411,nssv674031,nssv653100,nssv691810,nssv654970,nssv660979,nssv681745,nssv685355,nssv666523,nssv659283,nssv662364,nssv667366,nssv659785,nssv660278,nssv663955,nssv656707,nssv669255,nssv687269,nssv668057,nssv669758,nssv652635,nssv669176,nssv671063,nssv656659,nssv689683,nssv668157,nssv659339,nssv659471,nssv681089,nssv691923,nssv662774,nssv672873,nssv652143,nssv683787 M 2026 0 49 "" nsv818247 4 83993902 83997511 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416634,nssv1416633,nssv1418444 M 112 0 3 "" NA19119,NA19120,NA19193 nsv441894 4 83994547 83999005 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv524141 4 84025589 84029342 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700019 S 2026 1 0 "" nsv291633 4 84069580 84074141 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310211 M 24 "" nsv829990 4 84313629 84467272 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443779 S 95 1 0 "" nsv522237 4 84365441 84536659 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695017 S 2026 1 0 "" nsv829991 4 84392509 84569215 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443780 S 95 0 1 "" nsv526041 4 84415406 84667890 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702274 S 2026 0 1 "" nsv526192 4 84510789 84536659 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702454 S 2026 1 0 "" nsv829992 4 84522920 84736910 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443781 S 95 0 1 "" dgv156n6 4 84578888 84579183 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv291924,nsv292444 M 24 "" nsv516476 4 84645792 84667890 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705402,nssv662971,nssv668598 M 2026 0 3 "" nsv509909 4 84716618 84722618 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621238 S 4 0 1 "" NA15510 nsv829994 4 84723478 84915495 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443782 S 95 0 1 "" nsv829995 4 84778874 84835638 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443783,nssv1443784,nssv1443789,nssv1443793,nssv1443799,nssv1443788,nssv1443786,nssv1443792,nssv1443791,nssv1443798,nssv1443794,nssv1443787,nssv1443795,nssv1443797,nssv1443801,nssv1443800,nssv1443790 M 95 0 17 "" nsv293421 4 84928309 84928362 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311999 M 24 "" nsv517958 4 84969552 84990580 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695371 S 2026 0 1 "" nsv524354 4 85364154 85572321 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700263 S 2026 0 1 "" nsv829996 4 85373852 85530479 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443802 S 95 1 0 "" nsv508294 4 85393158 85430995 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617492 S 4 0 1 "" CHM nsv441895 4 85440208 85446479 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv441896 4 85484441 85490093 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv829997 4 85601255 85766584 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443803 S 95 1 0 "" nsv4405 4 85630518 85652388 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10410 S 9 1 0 "" NA18956 nsv829998 4 85656872 85830629 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443804 S 95 1 0 "" nsv4406 4 85862339 85868641 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3131 S 9 1 0 "" NA18555 nsv527581 4 85994814 85997770 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704042 S 2026 0 1 "" nsv519588 4 86119564 86948381 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694336 S 2026 1 0 "" nsv508295 4 86179981 86242206 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618744 S 4 0 1 "" NA10860 nsv461566 4 86345211 87082681 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537941 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00950 nsv4407 4 86457442 86490685 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2473 S 9 1 0 "" NA18555 nsv516778 4 86457943 86466799 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv673880,nssv670763,nssv661989 M 2026 0 3 "" nsv829999 4 86857436 87023198 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443805 S 95 1 0 "" nsv290889 4 87011414 87012968 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309467 M 24 "" nsv289665 4 87017949 87018270 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308243 M 24 "" nsv526211 4 87024072 87034286 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702475 S 2026 0 1 "" nsv291712 4 87028849 87033978 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310290 M 24 "" nsv461567 4 87031067 87034286 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537942 S 1557 0 1 "" 1780862066_A nsv830000 4 87102520 87266238 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443806 S 95 0 1 "" nsv509910 4 87123510 87129510 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622056,nssv621239,nssv618173 M 4 0 3 "" CHM,NA10860,NA15510 nsv517318 4 87332241 87347206 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv670291,nssv664044,nssv656810,nssv669977,nssv674102,nssv661963,nssv688230,nssv671133,nssv665481,nssv666657,nssv681671,nssv660442,nssv689982,nssv658507,nssv654295,nssv665235,nssv653819,nssv657508,nssv655480,nssv652605,nssv666597,nssv656412,nssv675910,nssv688723,nssv663496,nssv654105,nssv683596,nssv677099,nssv670490,nssv664713,nssv656844,nssv660980,nssv665339,nssv658859,nssv682272,nssv691836,nssv668644,nssv684169,nssv675179,nssv687896,nssv661614,nssv660999,nssv677030,nssv664568,nssv662212,nssv688349,nssv669439,nssv678850,nssv660796,nssv661178,nssv692877,nssv664958,nssv675646,nssv693838,nssv666701,nssv690164,nssv658829,nssv672456,nssv658265,nssv678538,nssv659284,nssv674351,nssv655043,nssv671404,nssv686428,nssv682853,nssv689631,nssv683696,nssv694021,nssv685747,nssv674783,nssv666327,nssv672143,nssv676509,nssv676121,nssv670566,nssv655409,nssv656954,nssv654971,nssv663050,nssv658600,nssv675450,nssv677820,nssv684339,nssv658893,nssv676018,nssv665134,nssv675417,nssv688269,nssv652122,nssv693610,nssv663526,nssv668058,nssv656367,nssv661424 M 2026 0 95 "" nsv10529 4 87333057 87338065 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11675,nssv12037,nssv13407,nssv12661,nssv13191 M 31 0 5 Samples from several populations that are part of the HapMap project. "" NA10847,NA11830,NA18860,NA19132,NA19240 nsv442912 4 87333273 87337123 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv471766 4 87333566 87337131 CNV Loss Hinds et al 2006 16327809 Oligo_aCGH,PCR Custom Perlegen arrays nssv646047 M 0.193 95 "" dgv660n27 4 87336261 87337106 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv461571,nsv461569,nsv461573,nsv461568,nsv461570 M 1557 0 5 "" HGDP00627,HGDP00643,HGDP00994,HGDP01033,NINDS_100 nsv818248 4 87336261 87337106 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418362,nssv1418361,nssv1415571,nssv1416054,nssv1416053,nssv1415947,nssv1418445,nssv1418446 M 112 0 8 "" NA10847,NA12146,NA12154,NA12750,NA12801,NA12812,NA19192,NA19194 nsv4408 4 87409446 87425925 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7976 S 9 1 0 "" NA12156 nsv291104 4 87423548 87423729 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309682 M 24 "" dgv1648e1 4 87432938 87495944 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv24330,esv1124 M 271 0 0 "" NA11882 essv19743 4 87461349 87495944 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA10859 nsv515925 4 87499427 87522937 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv679028,nssv665322,nssv654594,nssv659855 M 2026 0 4 "" nsv461574 4 87596943 87636275 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537949 S 1557 0 1 "" 1780854327_A dgv1649e1 4 87774470 88046712 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv5660,esv1400 M 271 0 0 "" NA18526 nsv4411 4 87803905 87837694 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4760 S 9 1 0 "" NA19129 nsv830001 4 87942457 88105822 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443808 S 95 0 1 "" nsv508296 4 87993529 88024551 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617493,nssv618745 M 4 0 2 "" CHM,NA10860 nsv528327 4 88034436 88036821 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704908 S 2026 0 1 "" nsv507180 4 88063372 88069372 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621756,nssv617636 M 4 2 0 "" CHM,NA10860 nsv508297 4 88135962 88225687 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618746 S 4 0 1 "" NA10860 nsv291773 4 88241522 88248210 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310351 M 24 "" nsv507181 4 88353201 88359201 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617637 S 4 1 0 "" CHM nsv516203 4 88525057 88585407 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv686936,nssv674175,nssv666796,nssv659076 M 2026 0 4 "" nsv525583 4 88591772 88596329 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701722 S 2026 0 1 "" nsv4412 4 88594992 88640547 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9398,nssv3268,nssv7977,nssv4761 M 9 0 4 "" NA12156,NA12878,NA18517,NA19129 nsv293508 4 88595923 88598713 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv312086 M 24 "" nsv293528 4 88625440 88631494 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv312106 M 24 "" nsv291403 4 88841063 88843491 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309981 M 24 "" esv2752051 4 88982615 89029904 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6981926,essv6989544 M 771 0 1 "" BEC_501 nsv436953 4 89019669 89037261 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv466834 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA10859 dgv1650e1 4 89025760 89072503 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv19875,esv946 M 271 0 0 "" NA11881 esv34597 4 89026567 89029900 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6978132,essv6978131 M 771 0 1 "" NA11881 essv19745 4 89026567 89029904 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA10859 nsv515943 4 89089871 89090090 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv665396,nssv701677,nssv685671 M 2026 1 2 "" dgv322n21 4 89089942 89090710 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv526279,nsv527296 M 2026 0 2 "" dgv94n17 4 89111740 89128177 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437403,nsv437400,nsv437401 M 60 0 3 "" NA18863,NA19103,NA19142 nsv509911 4 89132138 89138138 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623948,nssv621240,nssv622057 M 4 0 3 "" NA10860,NA15510,NA18994 nsv7364 4 89166873 89254995 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv11088,nssv4762,nssv3269,nssv9646,nssv9645,nssv9399,nssv7101,nssv10411,nssv7102,nssv398,nssv4763 M 9 0 0 "" NA12156,NA12878,NA15510,NA18507,NA18517,NA18956,NA19129,NA19240 nsv524904 4 89226134 89226265 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700915 S 2026 0 1 "" nsv517555 4 89244524 89245292 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv672635,nssv652349,nssv659438 M 2026 0 3 "" dgv1651e1 4 89275730 89570298 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv23649,essv18596,esv776 M 271 0 0 "" NA10863,NA12234 nsv10530 4 89276106 89280737 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12236 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19007 essv19863 4 89315671 89486435 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12234 nsv4413 4 89362085 89407527 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7103 S 9 0 1 "" NA12156 nsv10531 4 89377545 89441572 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11886 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA10863 nsv441897 4 89381267 89438618 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv292910 4 89394848 89395183 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311488 M 24 "" nsv4414 4 89395184 89427260 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7104 S 9 1 0 "" NA12156 esv33059 4 89396328 89411553 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv95649 S 51 0 1 "" 21841 nsv818249 4 89408177 89436565 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417394,nssv1417405 M 112 2 0 "" NA10863,NA12234 nsv509009 4 89429426 89468050 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619377 S 4 1 0 "" NA10860 nsv4415 4 89440675 89459747 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3270,nssv4764 M 9 2 0 "" NA12878,NA19129 nsv10532 4 89565358 89567345 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13467 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19132 nsv461575 4 89834180 89924945 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537950 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00614 nsv290332 4 89855947 89855947 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308910 M 24 "" nsv291508 4 89880103 89880417 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310086 M 24 "" nsv461576 4 89899459 91817866 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537951 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00721 nsv4416 4 90131067 90139564 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10412 S 9 1 0 "" NA18956 nsv461577 4 90261302 90343504 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537952 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00541 nsv436954 4 90341456 90360264 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv466835 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA12707 nsv292694 4 90375508 90375667 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311272 M 24 "" nsv830002 4 90413410 90616043 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443809 S 95 1 0 "" nsv292378 4 90435685 90435685 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310956 M 24 "" nsv523809 4 90666490 90667871 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699639 S 2026 0 1 "" nsv830003 4 90689007 90895312 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443811,nssv1443810 M 95 0 2 "" nsv471767 4 90784973 90785842 CNV Loss Hinds et al 2006 16327809 Oligo_aCGH,PCR Custom Perlegen arrays nssv646048 M 0.258 95 "" nsv4417 4 90873014 90917617 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4673 S 9 0 1 "" NA19129 dgv661n27 4 90929500 90988079 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv461579,nsv461578,nsv461580 M 1557 3 0 "" HGDP00351,HGDP00359,HGDP00392 nsv522681 4 90960222 90988079 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv706089 S 2026 1 0 "" nsv830005 4 91156576 91320598 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443812 S 95 0 1 "" nsv4418 4 91182663 91216780 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7978 S 9 1 0 "" NA12156 nsv516189 4 91223997 91309602 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv666679,nssv688363,nssv671329,nssv689815 M 2026 0 4 "" nsv830006 4 91328834 91543518 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443813 S 95 0 1 "" nsv437924 4 91528968 91554970 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv468500 S 269 0 1 Samples from several populations that are part of the HapMap project. "" NA11832 nsv818250 4 91553047 91569270 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416337,nssv1416336 M 112 0 2 "" NA18855,NA18857 nsv524051 4 91553047 91584859 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699916 S 2026 1 0 "" nsv441898 4 91644334 91648694 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv157n6 4 91738362 91738681 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv291976,nsv291459 M 24 "" dgv158n6 4 91739378 91739706 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv291145,nsv292507 M 24 "" nsv4419 4 91939571 91970148 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3271,nssv10413,nssv2474,nssv4765,nssv7105 M 9 0 5 "" NA12156,NA12878,NA18555,NA18956,NA19129 nsv461581 4 91953912 92004224 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537956 S 1557 0 1 "" 1780854464_A nsv508298 4 91955201 91962062 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617494 S 4 0 1 "" CHM nsv4420 4 91973485 92018974 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7106 S 9 0 1 "" NA12156 nsv4422 4 92101355 92146366 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7979 S 9 0 1 "" NA12156 nsv518069 4 92146249 92151999 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695483 S 2026 0 1 "" nsv10533 4 92199954 92293170 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14310,nssv13221,nssv13362,nssv11916 M 31 3 1 Samples from several populations that are part of the HapMap project. "" NA10863,NA18502,NA18860,NA19221 nsv521606 4 92204974 92213486 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698223 S 2026 0 1 "" nsv818251 4 92246061 92255243 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416635,nssv1416636 M 112 0 2 "" NA19116,NA19120 nsv516428 4 92246061 92259798 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv678872,nssv668316,nssv682301,nssv683788,nssv661233,nssv687334,nssv657325,nssv689024,nssv686209 M 2026 0 9 "" nsv4423 4 92266177 92310218 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7980,nssv2475 M 9 0 2 "" NA12156,NA18555 nsv461582 4 92268061 92282962 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537957 S 1557 0 1 "" 1780854576_A nsv437404 4 92271593 92298207 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467285 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19094 dgv95n17 4 92283827 92298207 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv436956,nsv436955,nsv436957 M 60 0 3 "" NA07029,NA12801,NA12865 nsv437925 4 92290742 92291877 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv468520,nssv468521,nssv468504,nssv468524,nssv468510,nssv468503,nssv468515,nssv468512,nssv468513,nssv468501,nssv468511,nssv468522,nssv468502,nssv468525,nssv468526,nssv468509,nssv468505,nssv468517,nssv468506,nssv468516,nssv468523,nssv468514,nssv468508 M 269 0 23 Samples from several populations that are part of the HapMap project. "" NA07000,NA07029,NA07056,NA07345,NA07348,NA10839,NA10856,NA10863,NA11832,NA11992,NA12004,NA12006,NA12057,NA12146,NA12154,NA12156,NA12264,NA12762,NA12801,NA12802,NA12812,NA12865,NA12875 esv33457 4 92292379 92292858 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97013,essv93651 M 51 0 2 "" 21817,21972 dgv1652e1 4 92303842 92503292 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv89,essv5937 M 271 0 0 "" NA18550 esv33772 4 92306969 92307090 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100890 S 51 0 1 "" 21656 nsv4424 4 92314768 92334585 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7107,nssv10414,nssv399 M 9 3 0 "" NA12156,NA18956,NA19240 nsv509010 4 92316047 92350141 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620792,nssv619378,nssv623414,nssv618026 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv10534 4 92323778 92366360 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13251,nssv14340,nssv12691,nssv12265,nssv12579 M 31 0 5 Samples from several populations that are part of the HapMap project. "" NA12740,NA18860,NA18980,NA19221,NA19240 nsv4425 4 92340063 92345805 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3132 S 9 1 0 "" NA18555 nsv528519 4 92362581 92374678 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705129 S 2026 0 1 "" nsv10535 4 92414657 92418505 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12295 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18980 nsv4426 4 92469031 92501235 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10415 S 9 1 0 "" NA18956 nsv10536 4 92512709 92520028 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13497 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19132 nsv4427 4 92532912 92565413 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10416 S 9 1 0 "" NA18956 dgv323n21 4 92598765 92650660 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv529020,nsv522208 M 2026 0 2 "" nsv515874 4 92638111 92640949 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv684786,nssv668736,nssv665918,nssv666377,nssv655916,nssv652231,nssv659927,nssv687825,nssv660291,nssv683568,nssv676559,nssv663974,nssv688494,nssv665715,nssv688404,nssv687014,nssv671420,nssv670542,nssv652727,nssv667508,nssv679567,nssv676328,nssv664112,nssv651681,nssv678355,nssv685672,nssv683933,nssv686089,nssv679930,nssv660497,nssv687483,nssv672793,nssv673385,nssv672005,nssv658075,nssv662389,nssv658917,nssv661860,nssv671833,nssv665236,nssv673761,nssv652826,nssv688595 M 2026 0 43 "" nsv818252 4 92638111 92640949 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418364,nssv1418363 M 112 0 2 "" NA10847,NA12146 nsv461584 4 92638111 92701398 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537959 S 1557 0 1 "" NINDS_184 nsv523397 4 92638597 92643783 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699148 S 2026 0 1 "" nsv518645 4 92643783 92779434 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696094 S 2026 1 0 "" dgv324n21 4 92777349 92779434 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv520157,nsv526217 M 2026 0 2 "" nsv461586 4 92787139 92840984 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537960 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00926 nsv4428 4 92815724 92818345 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7981 S 9 1 0 "" NA12156 nsv293289 4 92830019 92832433 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311867 M 24 "" nsv441899 4 92830492 92835499 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv509912 4 92906735 92912735 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623949 S 4 0 1 "" NA18994 nsv4429 4 92926106 92960773 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv400 S 9 1 0 "" NA19240 nsv523604 4 93008288 93053892 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699397 S 2026 0 1 "" nsv508299 4 93008619 93080507 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618747 S 4 0 1 "" NA10860 nsv509913 4 93018878 93024878 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623950,nssv618174 M 4 0 2 "" CHM,NA18994 nsv292895 4 93044394 93044394 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311473 M 24 "" nsv4430 4 93054793 93086702 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4766 S 9 1 0 "" NA19129 nsv461587 4 93194762 93733409 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537961 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00591 nsv519845 4 93237302 93240700 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv682663,nssv659000 M 2026 0 2 "" nsv292385 4 93242401 93242471 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310963 M 24 "" nsv293519 4 93263141 93263141 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv312097 M 24 "" nsv516164 4 93263970 93288102 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv663082,nssv671788,nssv666565 M 2026 0 3 "" nsv830007 4 93459090 93674834 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443814 S 95 1 0 "" nsv291186 4 93750257 93750576 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309764 M 24 "" nsv441900 4 93769550 93775757 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv818253 4 93857170 93872344 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418144 S 112 0 1 "" NA19143 nsv830008 4 93868135 94043113 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443816,nssv1443815,nssv1443817,nssv1443820,nssv1443819 M 95 5 0 "" esv33364 4 94214422 94216732 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100784,essv97149,essv100086 M 51 3 0 "" 21656,22075,22086 nsv461588 4 94406762 94463350 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537962 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00670 nsv818254 4 94406762 94463350 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416149 S 112 1 0 "" NA12892 nsv509914 4 94501579 94507579 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622058 S 4 0 1 "" NA10860 nsv292478 4 94522819 94522959 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311056 M 24 "" nsv830009 4 94795929 94989834 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443833,nssv1443823,nssv1443844,nssv1443822,nssv1443821,nssv1443824,nssv1443832,nssv1443831,nssv1443828,nssv1443827,nssv1443825,nssv1443826,nssv1443830,nssv1443835,nssv1443839,nssv1443843,nssv1443836,nssv1443837,nssv1443838,nssv1443842,nssv1443841,nssv1443847,nssv1443853,nssv1443846,nssv1443845,nssv1443850,nssv1443848,nssv1443849,nssv1443854,nssv1443856,nssv1443855,nssv1443834,nssv1443859,nssv1443858,nssv1443857,nssv1443861,nssv1443860 M 95 37 0 "" dgv159n6 4 94796260 94796368 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv291137,nsv291544 M 24 "" nsv292897 4 94796297 94796368 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311475 M 24 "" nsv821636 4 94796814 95473768 CNV Gain Sebat_et_al_2004 15273396 ROMA Custom Nimblegen photoprint 85000 probe ROMA oligo array nssv1421366,nssv1421368,nssv1421375,nssv1421367,nssv1421373,nssv1421376,nssv1421371,nssv1421378,nssv1421370,nssv1421369,nssv1421377,nssv1421379,nssv1421380,nssv1421372 M 31 14 0 "" nsv436959 4 94893075 94898144 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv466840 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA10846 nsv437927 4 94893582 94894332 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv468527,nssv468528 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA10846,NA12145 nsv4431 4 94904575 94923940 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv401 S 9 0 1 "" NA19240 nsv4433 4 94950064 94961981 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4767 S 9 0 1 "" NA19129 nsv290335 4 95142915 95148951 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308913 M 24 "" nsv830010 4 95187417 95386581 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443862 S 95 1 0 "" nsv509915 4 95293120 95299120 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622059 S 4 0 1 "" NA10860 nsv507182 4 95499492 95505492 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622897,nssv620255 M 4 2 0 "" NA15510,NA18994 nsv292335 4 95554237 95560535 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310913 M 24 "" nsv519228 4 95634489 95649880 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696719 S 2026 0 1 "" nsv518579 4 96063515 96112722 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696023 S 2026 1 0 "" nsv830011 4 96304738 96461112 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443864 S 95 1 0 "" nsv519986 4 96516855 96516995 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv690661,nssv687704,nssv659944 M 2026 0 3 "" nsv471768 4 96603678 96604773 CNV Loss Hinds et al 2006 16327809 Oligo_aCGH,PCR Custom Perlegen arrays nssv646049 M 0.021 95 "" nsv523039 4 96718331 96758825 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698722 S 2026 0 1 "" nsv521417 4 96798734 96805865 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698027 S 2026 0 1 "" nsv525953 4 96813728 96818592 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702160 S 2026 0 1 "" nsv527705 4 96816030 96818592 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704184 S 2026 0 1 "" nsv830012 4 96904961 97103341 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443865 S 95 1 0 "" nsv437405 4 97091597 97104281 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467286 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19132 nsv10537 4 97114749 97313472 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12328 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19144 nsv527846 4 97151205 97152964 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704344 S 2026 0 1 "" nsv516204 4 97165451 97165791 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv671134,nssv666797 M 2026 0 2 "" nsv818255 4 97165451 97167425 CNV Gain+Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415948,nssv1415949 M 112 1 1 "" NA12750,NA12751 nsv830013 4 97390303 97561469 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443866 S 95 1 0 "" nsv461589 4 97462059 97668835 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537963 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00908 nsv461590 4 97554214 97623238 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537964 S 1557 0 1 "" NINDS_222 nsv292055 4 97571447 97571504 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310633 M 24 "" nsv292864 4 97571623 97571854 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311442 M 24 "" nsv293037 4 97571797 97571854 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311615 M 24 "" nsv441901 4 97677408 97679581 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv509011 4 97749776 97786962 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623415,nssv620793 M 4 2 0 "" NA15510,NA18994 nsv507183 4 97776366 97782366 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617638 S 4 1 0 "" CHM dgv1653e1 4 97866744 98166270 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv52,essv1934 M 271 0 0 "" NA18959 nsv291994 4 97929293 97929611 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310572 M 24 "" nsv10538 4 98062040 98063798 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12358 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19144 nsv524811 4 98168477 98168530 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700804 S 2026 0 1 "" nsv524219 4 98168477 98192734 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700107 S 2026 0 1 "" nsv4434 4 98253425 98285673 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7108 S 9 1 0 "" NA12156 nsv290633 4 98254373 98254708 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309211 M 24 "" nsv293123 4 98332792 98338032 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311701 M 24 "" nsv4435 4 98430135 98485112 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4768,nssv7109 M 9 2 0 "" NA12156,NA19129 nsv289695 4 98467823 98468148 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308273 M 24 "" nsv291115 4 98490554 98490867 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309693 M 24 "" nsv442913 4 98529592 98542310 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv830014 4 98577437 98776813 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443867 S 95 0 1 "" esv33388 4 98712903 98715120 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97170,essv99883,essv98431 M 51 0 3 "" 22075,22086,22352 nsv830016 4 98718085 98907929 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443868 S 95 0 1 "" nsv292020 4 98782083 98782194 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310598 M 24 "" nsv290890 4 98827343 98827343 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309468 M 24 "" nsv291303 4 98827348 98827348 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309881 M 24 "" dgv662n27 4 98955171 99122525 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv461591,nsv461592,nsv461593 M 1557 3 0 "" HGDP01043,HGDP01050,HGDP01058 nsv830017 4 99223477 99404955 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443869 S 95 0 1 "" dgv325n21 4 99230845 99422658 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv528390,nsv522741 M 2026 0 2 "" nsv292701 4 99317738 99317738 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311279 M 24 "" nsv4436 4 99318035 99364012 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7110 S 9 0 1 "" NA12156 nsv509916 4 99323115 99329115 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618175 S 4 0 1 "" CHM nsv461595 4 99422658 99529353 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537969 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01184 nsv509917 4 99472249 99478249 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618176 S 4 0 1 "" CHM nsv528127 4 99503614 99587017 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704672 S 2026 1 0 "" nsv509918 4 100039658 100045658 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618177,nssv622060,nssv623951 M 4 0 3 "" CHM,NA10860,NA18994 nsv4437 4 100043786 100077304 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4770 S 9 1 0 "" NA19129 nsv4438 4 100307832 100341419 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4771 S 9 1 0 "" NA19129 dgv160n6 4 100380221 100380563 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv289916,nsv292906 M 24 "" nsv289679 4 100427467 100427782 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308257 M 24 "" nsv528518 4 100615333 100631927 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705128 S 2026 0 1 "" nsv293592 4 100615953 100616730 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv312170 M 24 "" nsv517344 4 100679623 100720747 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv666180,nssv651785 M 2026 2 0 "" nsv289933 4 100867024 100867165 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308511 M 24 "" nsv520074 4 101139221 101142158 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv690348,nssv660543,nssv660495,nssv691558,nssv691192 M 2026 0 5 "" nsv4439 4 101297606 101331703 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3133 S 9 1 0 "" NA18555 nsv830018 4 101334416 101385098 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443880,nssv1443875,nssv1443870,nssv1443873,nssv1443871,nssv1443876,nssv1443872,nssv1443884,nssv1443879,nssv1443878,nssv1443877,nssv1443883,nssv1443882,nssv1443881,nssv1443886 M 95 0 15 "" nsv830019 4 101380844 101566086 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443887 S 95 1 0 "" nsv441902 4 101431988 101458243 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv818257 4 101442436 101457836 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417488 S 112 0 1 "" NA18965 nsv521801 4 101676343 101678942 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694571 S 2026 0 1 "" esv2422310 4 101757162 101838840 CNV Deletion Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161555 S 181 0 1 "" ND01692 nsv292058 4 101850552 101850653 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310636 M 24 "" nsv517131 4 101957032 101957086 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv679596,nssv663986,nssv657777,nssv661419,nssv660740,nssv666560,nssv664220,nssv691121,nssv677281,nssv680050,nssv665229,nssv689023,nssv675029,nssv690106,nssv665456,nssv678015,nssv690163,nssv675449,nssv653833,nssv656407,nssv679648,nssv652435,nssv669386,nssv689270,nssv687526,nssv680376,nssv675643,nssv664761,nssv661691,nssv653343,nssv675947,nssv657422 M 2026 0 32 "" nsv290022 4 102369169 102369258 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308600 M 24 "" nsv518217 4 102397269 102399227 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695642 S 2026 0 1 "" nsv509012 4 102620978 102641145 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619379 S 4 1 0 "" NA10860 dgv1654e1 4 103019877 103366118 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv9472,esv594,essv8137 M 271 0 0 "" NA19206,NA19208 nsv10540 4 103100355 103103412 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13663 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18504 essv16616 4 103130039 103291127 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19208 nsv4440 4 103222753 103255920 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7982 S 9 1 0 "" NA12156 nsv290436 4 103285379 103285379 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309014 M 24 "" nsv461596 4 103293080 103365890 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537970 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00531 nsv4441 4 103318106 103352093 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3134 S 9 1 0 "" NA18555 nsv461597 4 103325260 103374056 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537971 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01177 nsv291796 4 103475746 103475746 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310374 M 24 "" nsv507184 4 103481705 103487705 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620256,nssv617639,nssv621757,nssv622898 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv293001 4 103490535 103490535 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311579 M 24 "" nsv507185 4 103693542 103699542 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620257,nssv621758 M 4 2 0 "" NA10860,NA15510 nsv521275 4 103730466 103730644 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697881 S 2026 0 1 "" nsv830020 4 103744522 103938487 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443888 S 95 0 1 "" nsv4442 4 103776390 103808006 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10417 S 9 1 0 "" NA18956 nsv4444 4 103926287 103947627 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3272 S 9 1 0 "" NA12878 nsv526256 4 104069824 104085275 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702528 S 2026 0 1 "" nsv10541 4 104135701 104143230 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11972,nssv12454 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA07029,NA10839 dgv1655e1 4 104137960 104300049 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv3884,essv12179,essv22104,essv24673,essv10866 M 271 0 0 "" NA10857,NA11829,NA18871,NA18994,NA19101 dgv1656e1 4 104137960 104414925 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv824,esv93 M 271 0 0 "" NA18973 dgv161n6 4 104142768 104143116 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv289504,nsv290357 M 24 "" nsv528680 4 104165310 104190531 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705321 S 2026 0 1 "" nsv461598 4 104165310 104310993 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537972 S 1557 0 1 "" NINDS_162 nsv10542 4 104176781 104229386 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13392 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18502 nsv508300 4 104215640 104234433 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622493 S 4 0 1 "" NA18994 nsv4445 4 104282172 104313724 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4772 S 9 1 0 "" NA19129 nsv830021 4 104292058 104458192 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443889 S 95 0 1 "" nsv4446 4 104314164 104337731 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3135 S 9 1 0 "" NA18555 nsv830022 4 104444803 104615388 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443890 S 95 0 1 "" nsv821637 4 104492443 104603771 CNV Loss Sebat_et_al_2004 15273396 ROMA Custom Nimblegen photoprint 85000 probe ROMA oligo array nssv1421381 S 31 0 1 "" dgv1657e1 4 104537529 104699999 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv10365,essv14634,esv233,essv16360,essv9772,essv14962,essv9720 M 271 0 0 "" NA18863,NA18870,NA18913,NA19093,NA19193,NA19222 nsv10543 4 104548793 104606812 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14370 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19221 dgv96n17 4 104551368 104577998 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437407,nsv437406 M 60 0 2 "" NA18521,NA18872 dgv663n27 4 104551933 104600594 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv461602,nsv461599,nsv461601,nsv461600 M 1557 0 4 "" HGDP00464,HGDP00473,HGDP01094,HGDP01286 nsv526027 4 104557833 104607928 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702257 S 2026 0 1 "" nsv437408 4 104557833 104611613 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467289 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19221 nsv442914 4 104564418 104605538 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv516818 4 104566890 104592984 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv683089,nssv664221,nssv669253,nssv677247,nssv664657,nssv657505,nssv672186,nssv653578,nssv653834,nssv679805,nssv690942,nssv661420,nssv665230,nssv664260,nssv692173,nssv654502,nssv667365,nssv693667,nssv687268,nssv664786,nssv685301,nssv665295,nssv651951,nssv661913,nssv679026,nssv680775,nssv680157,nssv656495,nssv665045,nssv689515,nssv653108,nssv658130,nssv667450,nssv666561,nssv686961,nssv683863,nssv671648 M 2026 0 37 "" nsv818258 4 104566890 104592984 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416841 S 112 0 1 "" NA19238 dgv664n27 4 104566890 104607928 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv461606,nsv461604,nsv461603 M 1557 0 3 "" HGDP00479,HGDP00912,HGDP00917 nsv437928 4 104569735 104570584 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv468533,nssv468529,nssv468532,nssv468531 M 269 0 4 Samples from several populations that are part of the HapMap project. "" NA18521,NA18522,NA18870,NA18872 nsv830023 4 104690646 104880405 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443891 S 95 0 1 "" nsv292824 4 104716242 104716292 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311402 M 24 "" nsv529017 4 104772115 104825638 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705728 S 2026 1 0 "" nsv4447 4 104785175 104829821 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7983 S 9 0 1 "" NA12156 nsv10544 4 104796578 104823547 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13452 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18502 nsv528103 4 104829675 104838403 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704644 S 2026 0 1 "" nsv436960 4 105091447 105121516 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv466841 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA10839 nsv10545 4 105093533 105119499 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12484 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA10839 nsv519782 4 105098919 105111227 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv671326,nssv658562,nssv672742,nssv659823,nssv689812 M 2026 0 5 "" nsv441903 4 105099994 105118868 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv437929 4 105111227 105118646 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv468534,nssv468535 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA10839,NA12005 nsv517732 4 105164762 105202189 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv666831,nssv704665,nssv681170,nssv658885,nssv677098,nssv675349,nssv656594,nssv658260,nssv666790,nssv693861,nssv653035,nssv662890,nssv657350,nssv660565,nssv690660,nssv684322,nssv681557,nssv687222,nssv661692 M 2026 0 19 "" nsv289652 4 105251651 105252281 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308230 M 24 "" nsv4448 4 105259226 105280007 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7984 S 9 0 1 "" NA12156 nsv461607 4 105261483 105335635 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537981 S 1557 0 1 "" NINDS_48 nsv520147 4 105263736 105265499 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv691314,nssv661208 M 2026 0 2 "" nsv461608 4 105382428 105399172 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537982 S 1557 0 1 "" 1780862074_A nsv519400 4 105436111 105442415 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694327 S 2026 0 1 "" nsv293576 4 105503922 105504188 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv312154 M 24 "" nsv523700 4 105664533 105669561 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699507 S 2026 0 1 "" nsv509919 4 105732593 105738593 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618178,nssv622061 M 4 0 2 "" CHM,NA10860 nsv290024 4 105864794 105870939 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308602 M 24 "" nsv4449 4 105929656 105964711 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv403 S 9 1 0 "" NA19240 nsv518787 4 105992836 106042485 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694274 S 2026 0 1 "" nsv292869 4 106109472 106109659 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311447 M 24 "" nsv461609 4 106227152 106723813 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537983 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01035 nsv830024 4 106241954 106395420 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443892 S 95 0 1 "" nsv830025 4 106346480 106495550 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443893 S 95 0 1 "" nsv292428 4 106508428 106512144 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311006 M 24 "" nsv830027 4 106579614 106764342 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443894 S 95 1 0 "" nsv291749 4 106592458 106592458 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310327 M 24 "" dgv162n6 4 106592489 106592553 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv291944,nsv291410 M 24 "" nsv521423 4 106800122 106806504 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694085 S 2026 0 1 "" nsv461610 4 106823732 106849115 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537984 S 1557 0 1 "" 1780862202_A nsv524424 4 106823732 106849115 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700350 S 2026 0 1 "" nsv517837 4 106824192 106860117 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695242 S 2026 0 1 "" nsv291273 4 106840166 106840236 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309851 M 24 "" nsv290938 4 106840244 106840303 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309516 M 24 "" nsv518958 4 106843349 106844188 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696425 S 2026 1 0 "" nsv441904 4 107067696 107074698 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv526871 4 107107818 107108632 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703229 S 2026 1 0 "" nsv830028 4 107126903 107159410 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443895,nssv1443897 M 95 0 2 "" nsv509920 4 107153064 107159064 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622062,nssv618179 M 4 0 2 "" CHM,NA10860 nsv522792 4 107253568 107340397 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698436 S 2026 1 0 "" nsv290813 4 107254635 107258530 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309391 M 24 "" nsv442915 4 107300531 107304039 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv4450 4 107395427 107440273 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4773,nssv7111 M 9 0 2 "" NA12156,NA19129 nsv508301 4 107406690 107450334 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618748,nssv622495 M 4 0 2 "" NA10860,NA18994 dgv97n17 4 107409711 107421951 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437410,nsv437409 M 60 0 2 "" NA18863,NA19139 nsv437411 4 107409711 107431701 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467292 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19161 nsv830029 4 107560700 107711087 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443898 S 95 1 0 "" nsv292064 4 107677842 107677842 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310642 M 24 "" nsv4451 4 107957561 107970985 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3273 S 9 0 1 "" NA12878 nsv4452 4 107997808 108042474 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7985 S 9 0 1 "" NA12156 esv2752020 4 107999188 108245067 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6982960,essv6988606,essv6982959,essv6982961 M 771 1 0 "" BEC_529 nsv291599 4 108123464 108127941 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310177 M 24 "" nsv4453 4 108183198 108213734 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv404 S 9 1 0 "" NA19240 nsv289834 4 108331935 108332091 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308412 M 24 "" nsv436961 4 108417633 108438538 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv466842 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA10835 nsv10546 4 108420157 108434007 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12002 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA07029 nsv441905 4 108423355 108432871 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv4455 4 108452903 108509774 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3274,nssv7112 M 9 0 2 "" NA12156,NA12878 nsv508302 4 108484010 108500781 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619940,nssv617495,nssv618749,nssv622496 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv290974 4 108485433 108489338 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309552 M 24 "" nsv289936 4 108527628 108534594 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308514 M 24 "" nsv437930 4 108550344 108564235 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv468538,nssv468546,nssv468545,nssv468537,nssv468540,nssv468544,nssv468539,nssv468543,nssv468542,nssv468536 M 269 0 10 Samples from several populations that are part of the HapMap project. "" NA18503,NA18505,NA18506,NA18507,NA18859,NA18860,NA19130,NA19132,NA19201,NA19202 nsv293297 4 108634301 108637108 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311875 M 24 "" nsv507186 4 108771090 108777090 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617640,nssv620258 M 4 2 0 "" CHM,NA15510 nsv830030 4 108777051 108935252 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443899,nssv1443901,nssv1443900 M 95 0 3 "" nsv4456 4 108866894 108911649 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4774 S 9 0 1 "" NA19129 nsv442916 4 108869359 108872102 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv528356 4 108981263 109019406 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704941 S 2026 0 1 "" nsv830031 4 109003216 109162736 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443902 S 95 1 0 "" nsv461611 4 109176361 109245049 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537985 S 1557 0 1 "" 1782681102_A nsv4457 4 109189703 109220606 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4775 S 9 1 0 "" NA19129 dgv1658e1 4 109298778 109305695 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv3665,esv1324 M 271 0 0 "" NA18991 nsv4458 4 109387336 109432308 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7986 S 9 0 1 "" NA12156 nsv830032 4 109424872 109612072 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443903 S 95 1 0 "" nsv289357 4 109465295 109465595 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv307935 M 24 "" nsv461612 4 109559640 109600409 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537986 S 1557 0 1 "" 1780854065_A nsv830033 4 109612699 109806311 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443904 S 95 0 1 "" nsv528900 4 109967144 109985629 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705584 S 2026 0 1 "" nsv830034 4 110015295 110177329 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443905 S 95 0 1 "" nsv520874 4 110018319 110018508 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697662 S 2026 0 1 "" nsv519226 4 110018319 110044918 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696716 S 2026 0 1 "" nsv290185 4 110025890 110026000 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308763 M 24 "" dgv163n6 4 110025923 110026027 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv290437,nsv289680 M 24 "" nsv830035 4 110195886 110363361 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443906 S 95 1 0 "" nsv519227 4 110237880 110243971 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696717 S 2026 0 1 "" nsv461613 4 110279668 110951064 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537987 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01041 nsv293715 4 110280184 110280184 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv312293 M 24 "" nsv461614 4 110523038 110577988 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537988 S 1557 0 1 "" 1780854538_A nsv4459 4 110524471 110553781 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2476 S 9 1 0 "" NA18555 nsv515893 4 110580449 110612445 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv672633,nssv672187,nssv680719,nssv665176 M 2026 0 4 "" nsv4460 4 110600958 110612955 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4776 S 9 1 0 "" NA19129 nsv4461 4 110680573 110714504 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7987 S 9 1 0 "" NA12156 nsv525385 4 110752750 110824017 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701507 S 2026 0 1 "" nsv292772 4 110755412 110755412 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311350 M 24 "" nsv4462 4 110796079 110830240 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7988 S 9 1 0 "" NA12156 nsv292142 4 110856345 110856669 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310720 M 24 "" nsv508303 4 110936909 110962056 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617496 S 4 0 1 "" CHM nsv4463 4 111005335 111050729 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7113 S 9 0 1 "" NA12156 nsv290561 4 111106065 111106130 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309139 M 24 "" nsv290769 4 111198345 111203342 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309347 M 24 "" dgv98n17 4 111352821 111364389 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437414,nsv437412 M 60 0 2 "" NA18854,NA18857 nsv290523 4 111420473 111420626 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309101 M 24 "" nsv290442 4 111505539 111506254 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309020 M 24 "" nsv441906 4 111655235 111658118 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv164n6 4 111740805 111741138 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv292316,nsv293374 M 24 "" nsv830036 4 111764106 111953333 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443908 S 95 1 0 "" nsv507187 4 111778029 111784029 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621759 S 4 1 0 "" NA10860 nsv518506 4 111812235 111854448 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695947 S 2026 0 1 "" nsv4464 4 111871063 111904724 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3275 S 9 1 0 "" NA12878 nsv289994 4 111873926 111874115 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308572 M 24 "" nsv292028 4 111917056 111917115 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310606 M 24 "" nsv461618 4 111924481 111940938 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537992 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00464 nsv4466 4 111925464 111945001 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv405 S 9 1 0 "" NA19240 nsv289640 4 112070215 112076227 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308218 M 24 "" nsv4467 4 112080232 112110993 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10418 S 9 1 0 "" NA18956 dgv165n6 4 112166355 112166682 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv290632,nsv290486 M 24 "" nsv437415 4 112331053 112343785 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467296 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19103 nsv507188 4 112392029 112398029 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620259 S 4 1 0 "" NA15510 nsv293078 4 112532731 112538190 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311656 M 24 "" nsv291864 4 112538225 112538400 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310442 M 24 "" nsv509921 4 112558866 112564866 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622063,nssv623952 M 4 0 2 "" NA10860,NA18994 dgv326n21 4 112614884 112623041 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv518719,nsv525551 M 2026 0 2 "" nsv524735 4 112622094 112646739 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700726 S 2026 0 1 "" nsv437416 4 112649475 112669894 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467297 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19240 nsv524823 4 112650763 112655019 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700818 S 2026 0 1 "" nsv10547 4 112654558 112666030 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12721 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19240 nsv442917 4 112655023 112664019 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv509922 4 112892618 112898618 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622064,nssv618180,nssv621241,nssv623953 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv289862 4 112907280 112912250 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308440 M 24 "" nsv4468 4 112968503 113002680 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3136,nssv7989 M 9 2 0 "" NA12156,NA18555 nsv509014 4 112979146 112990848 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619381 S 4 1 0 "" NA10860 nsv289828 4 112993777 112993978 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308406 M 24 "" nsv441907 4 113034391 113038199 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv290903 4 113056029 113056029 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309481 M 24 "" nsv4469 4 113066691 113097636 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10419 S 9 1 0 "" NA18956 nsv508305 4 113384993 113402056 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622497 S 4 0 1 "" NA18994 nsv4470 4 113611323 113644646 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv406 S 9 1 0 "" NA19240 nsv291215 4 113706112 113706173 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309793 M 24 "" dgv166n6 4 113827579 113827900 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv292825,nsv290102 M 24 "" nsv4471 4 113851902 113884512 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2477 S 9 0 1 "" NA18555 nsv525715 4 113894350 113936213 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701877 S 2026 0 1 "" nsv291420 4 113962736 113962736 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309998 M 24 "" nsv520766 4 114011521 114021709 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv675129,nssv688371 M 2026 0 2 "" nsv518022 4 114037518 114052365 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695432 S 2026 0 1 "" nsv4472 4 114039390 114058472 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7990 S 9 0 1 "" NA12156 nsv519387 4 114057753 114074908 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696826 S 2026 0 1 "" nsv4473 4 114150199 114185500 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv407 S 9 1 0 "" NA19240 nsv516249 4 114275290 114275347 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv663629,nssv663415,nssv654905,nssv693724,nssv667229,nssv678198,nssv683402,nssv667070,nssv655776 M 2026 0 9 "" nsv518231 4 114275290 114275386 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694214 S 2026 1 0 "" nsv521029 4 114275290 114275386 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697743 S 2026 0 1 "" nsv290373 4 114422043 114422043 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308951 M 24 "" nsv292421 4 114422046 114422046 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310999 M 24 "" nsv508306 4 114473672 114484854 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618750 S 4 0 1 "" NA10860 nsv830038 4 114568617 114749455 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443909 S 95 1 0 "" dgv167n6 4 114613277 114613462 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv291235,nsv291603 M 24 "" dgv1659e1 4 114711846 114719490 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv18003,esv1067 M 271 0 0 "" NA12005 esv34797 4 114711846 114719490 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6978604,essv6978603 M 771 0 1 "" NA12005 nsv4474 4 114838552 114861136 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7114 S 9 1 0 "" NA12156 nsv4475 4 114947203 114989485 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7991 S 9 0 1 "" NA12156 nsv507189 4 114973715 114979715 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620260 S 4 1 0 "" NA15510 nsv525087 4 115019285 115669088 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701145 S 2026 1 0 "" nsv524515 4 115196874 115979911 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700460 S 2026 1 0 "" dgv1660e1 4 115364724 115532828 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv10021,essv16968,essv11161,essv17299,essv14449,essv11553,essv11740,esv142,essv13907,essv17143,essv16295,essv14767 M 271 0 0 "" NA18504,NA18854,NA18856,NA19099,NA19144,NA19159,NA19161,NA19171,NA19173,NA19201,NA19211 dgv327n21 4 115459103 115584819 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv521597,nsv528727 M 2026 2 0 "" nsv293765 4 115504596 115504820 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv312343 M 24 "" nsv290539 4 115505084 115505084 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309117 M 24 "" nsv509923 4 115526405 115532405 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618181,nssv623954 M 4 0 2 "" CHM,NA18994 dgv99n17 4 115528854 115543462 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437418,nsv437417 M 60 0 2 "" NA19100,NA19221 nsv4477 4 115529622 115562314 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv408,nssv2478,nssv9400,nssv4778 M 9 0 4 "" NA18517,NA18555,NA19129,NA19240 nsv10548 4 115530015 115543108 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13527,nssv12076,nssv12260,nssv12751,nssv29137,nssv12839,nssv11987,nssv14033,nssv11955,nssv13693,nssv11561,nssv12573,nssv12388,nssv12266,nssv12384,nssv13281,nssv12514,nssv12032,nssv13358 M 31 11 8 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA12155,NA12802,NA12872,NA18504,NA18537,NA18552,NA18563,NA18853,NA18860,NA18972,NA18975,NA19007,NA19132,NA19144,NA19173,NA19240 nsv442918 4 115532927 115539779 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv437931 4 115535846 115539894 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv468560,nssv468573,nssv468572,nssv468557,nssv468556,nssv468581,nssv468570,nssv468562,nssv468553,nssv468548,nssv468550,nssv468582,nssv468576,nssv468566,nssv468547,nssv468565,nssv468564,nssv468579,nssv468577,nssv468571,nssv468558,nssv468567,nssv468580,nssv468555,nssv468586,nssv468554,nssv468561,nssv468559,nssv468549,nssv468569,nssv468568,nssv468584,nssv468575,nssv468551,nssv468578,nssv468583 M 269 0 35 Samples from several populations that are part of the HapMap project. "" NA06994,NA07000,NA07029,NA07048,NA07357,NA10830,NA10838,NA10839,NA10851,NA10855,NA10856,NA10863,NA11830,NA11831,NA12003,NA12056,NA12146,NA12154,NA12234,NA12249,NA12717,NA12760,NA12802,NA12865,NA12874,NA18532,NA18593,NA18635,NA18945,NA18964,NA18972,NA18975,NA18976,NA18987,NA18991 nsv433468 4 115536588 115539894 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463349 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA19240 nsv516059 4 115597133 115644935 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv659384,nssv665934 M 2026 2 0 "" nsv290544 4 115612022 115617252 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309122 M 24 "" esv2752021 4 115647000 115977274 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6985590,essv6981509,essv6981508 M 771 1 0 "" BEC_287 dgv665n27 4 115686936 115796712 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv461620,nsv461619,nsv461621 M 1557 3 0 "" HGDP00579,HGDP00641,HGDP00645 dgv1661e1 4 115699683 115947929 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv6193,essv6658,esv734 M 271 0 0 "" NA18532,NA18608 nsv461622 4 115726420 115768888 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537996 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00597 esv2752022 4 115741694 115792000 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6982186,essv6986096 M 771 1 0 "" BEC_400 nsv818259 4 115755804 115787143 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417285 S 112 0 1 "" NA18608 essv6938 4 115761288 115792082 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18608 nsv10549 4 115770621 115772934 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12544 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA10839 nsv830039 4 115838725 116026341 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443910 S 95 1 0 "" nsv4478 4 115854601 115886755 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2479,nssv7116,nssv4779 M 9 0 3 "" NA12156,NA18555,NA19129 nsv10551 4 115864913 115875563 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13557,nssv13311,nssv13388,nssv12414,nssv12017,nssv14063,nssv13723,nssv13514,nssv12325,nssv11962,nssv14400 M 31 0 11 Samples from several populations that are part of the HapMap project. "" NA12155,NA18504,NA18517,NA18563,NA18860,NA18942,NA18972,NA18975,NA18980,NA19132,NA19221 nsv442919 4 115865770 115868058 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv4479 4 115939918 115984595 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7992 S 9 0 1 "" NA12156 nsv509924 4 115943565 115949565 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622065,nssv618182,nssv621242,nssv623955 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv293371 4 115982202 115982474 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311949 M 24 "" nsv830040 4 116093159 116265729 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443913,nssv1443912,nssv1443911 M 95 3 0 "" nsv289904 4 116101494 116101738 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308482 M 24 "" nsv292358 4 116125855 116126185 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310936 M 24 "" nsv461623 4 116161021 116246842 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537997 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00110 nsv4480 4 116214011 116251390 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7993 S 9 0 1 "" NA12156 nsv830041 4 116311483 116487629 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443914 S 95 1 0 "" nsv290603 4 116374879 116374964 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309181 M 24 "" nsv461624 4 116410838 116687344 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537998 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00815 dgv1662e1 4 116439195 116540304 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1086,essv16604 M 271 0 0 "" NA18860 nsv461625 4 116445705 116519733 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv537999 S 1557 0 1 "" 1780854566_A nsv830042 4 116465389 116606173 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443915 S 95 1 0 "" nsv461626 4 116483854 116527293 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538000 S 1557 0 1 "" NINDS_145 nsv291667 4 116499306 116505251 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310245 M 24 "" dgv1663e1 4 116505726 116538159 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv24023,essv8663,essv4347,essv24356,essv19851,essv18006,essv2116,essv1689 M 271 0 0 "" NA10839,NA12005,NA12234,NA12873,NA18622,NA18959,NA18968,NA19101 nsv4481 4 116514058 116541005 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3277 S 9 0 1 "" NA12878 nsv437932 4 116519578 116529937 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv468588,nssv468590,nssv468587,nssv468589 M 269 0 4 Samples from several populations that are part of the HapMap project. "" NA12878,NA12892,NA19206,NA19208 nsv526996 4 116519578 116531532 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703371 S 2026 0 1 "" nsv818260 4 116522976 116531532 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418145 S 112 0 1 "" NA19143 dgv100n17 4 116523708 116539413 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437419,nsv436962 M 60 0 2 "" NA12878,NA19208 nsv10552 4 116523990 116534921 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13341,nssv11985,nssv12296,nssv12574,nssv13448 M 31 0 5 Samples from several populations that are part of the HapMap project. "" NA10839,NA12155,NA18537,NA18860,NA19007 nsv516863 4 116525762 116531532 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv653262,nssv666698,nssv693016,nssv687792,nssv661232,nssv693668,nssv679117,nssv687369,nssv684574,nssv684922,nssv690197,nssv677393,nssv668480,nssv654083,nssv658388,nssv673168,nssv661987,nssv679090,nssv657423,nssv651991,nssv661693,nssv658916,nssv659756,nssv658886,nssv679903,nssv685148,nssv661810,nssv687179,nssv690221,nssv658191,nssv667471,nssv692473,nssv684135,nssv678701,nssv685126,nssv679177,nssv678886,nssv655913,nssv686995,nssv670806,nssv660061,nssv682155,nssv682208,nssv660386,nssv679565,nssv690573,nssv658598,nssv662542,nssv680093,nssv669779,nssv680353,nssv689736,nssv678403,nssv670541,nssv658178,nssv666325,nssv673283,nssv664809,nssv676557,nssv658306,nssv672356,nssv684185,nssv677325,nssv678818,nssv669837,nssv683028,nssv663379,nssv693816,nssv690781,nssv680600,nssv669016,nssv665652,nssv688824,nssv657007,nssv655720,nssv654327,nssv671349,nssv678175,nssv668993,nssv662387,nssv673453,nssv679237,nssv683957,nssv662738,nssv670333,nssv654527,nssv668928,nssv661023,nssv665457,nssv659808,nssv663194,nssv681769,nssv662797,nssv698334,nssv669387,nssv673147,nssv686142,nssv677307,nssv651911,nssv659508,nssv665935,nssv657169,nssv659903,nssv653468,nssv663972,nssv651891,nssv653623,nssv675948,nssv678713,nssv668109,nssv677134,nssv660478,nssv682771,nssv652025 M 2026 0 114 "" nsv818261 4 116525762 116531532 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415572,nssv1416152,nssv1416151,nssv1418267 M 112 0 4 "" NA12154,NA12878,NA12892,NA19092 nsv818262 4 116525762 116538159 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417416,nssv1416725 M 112 0 2 "" NA12234,NA19159 nsv818263 4 116525762 116551743 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417507,nssv1417114 M 112 0 2 "" NA18537,NA18968 dgv666n27 4 116527293 116531532 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv461627,nsv461629 M 1557 0 2 "" 1780862355_A,1782681164_A nsv441908 4 116530211 116533729 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv1664e1 4 116530215 116533117 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv9512,essv20862,essv8519,essv22624,essv14,essv20810,essv16620 M 271 0 0 "" NA10855,NA12145,NA12154,NA18521,NA18523,NA18945,NA19208 dgv1665e1 4 116530215 116540304 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv4933,essv2911,essv13126,essv18458,essv7476,essv21608 M 271 0 0 "" NA11832,NA12155,NA18537,NA18633,NA18859,NA19007 nsv4482 4 116614534 116646064 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3278 S 9 1 0 "" NA12878 dgv1666e1 4 116621852 116809401 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv219,essv16362 M 271 0 0 "" NA19193 nsv10553 4 116723265 116725359 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12067 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA11830 nsv291550 4 116779486 116779603 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310128 M 24 "" nsv509925 4 116802133 116808133 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621243,nssv623956 M 4 0 2 "" NA15510,NA18994 nsv525527 4 116961354 117576081 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701662 S 2026 0 1 "" nsv516695 4 117122810 117127350 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv660080,nssv657114,nssv661157,nssv701411,nssv670209 M 2026 0 5 "" nsv291792 4 117201200 117201200 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310370 M 24 "" esv2752023 4 117262991 117442344 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6989541,essv6981904,essv6989271 M 771 0 1 "" BEC_500 nsv437420 4 117266315 117280570 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467301 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19240 nsv519394 4 117474153 117492984 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv660566,nssv655867 M 2026 0 2 "" nsv525075 4 117474153 117530229 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701129 S 2026 0 1 "" nsv291089 4 117609083 117609399 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309667 M 24 "" nsv4483 4 117696140 117705003 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7994 S 9 1 0 "" NA12156 nsv526265 4 117743269 117821330 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702538 S 2026 0 1 "" dgv168n6 4 117778233 117778527 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv291897,nsv290164 M 24 "" nsv293260 4 117788319 117788380 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311838 M 24 "" nsv525079 4 117790833 117827902 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701134 S 2026 0 1 "" dgv1667e1 4 117879914 117978482 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv3234,essv24800,essv1870,essv14771,essv9822,essv3031,essv24136,essv21694,essv3483,essv13779,essv17584,essv13616,essv9599,essv20794,essv4596,essv2509,essv22102,essv5547,essv16541,essv8781,essv14585,essv24419,essv23173,essv15685,essv10025,essv3308,essv7756,essv16159,essv12167,essv7012,essv18661,essv23263,essv12523,essv5921,essv23778,essv4464,essv5144,essv21785,essv3153,essv22077,essv5343,essv22954,essv24920,essv15780,essv16997,essv6027,essv545,essv13180,essv22389,essv15073,essv3127,essv16661,essv8190,essv23993,essv7328,essv5063,essv11147,essv22856,essv8922,essv357,essv4094,essv8092,essv19450,essv11196,esv13,essv4974,essv14518,essv19214,essv9906,essv13858,essv10661,essv11422,essv8351,essv10344,essv13474,essv9112,essv14115,essv18161,essv9064,essv19539,essv14436,essv21988,essv17929,essv12767,essv2310,essv6351,essv21831,essv454,essv6725,essv14182,essv132,essv11942,essv21514,essv6770,essv15208,essv18959 M 271 0 0 "" NA06994,NA07029,NA07357,NA10838,NA10847,NA10857,NA10860,NA11839,NA11840,NA11993,NA11995,NA12003,NA12005,NA12146,NA12154,NA12156,NA12234,NA12239,NA12248,NA12707,NA12716,NA12760,NA12762,NA12763,NA12864,NA12873,NA12875,NA18502,NA18506,NA18524,NA18529,NA18542,NA18550,NA18552,NA18562,NA18563,NA18564,NA18570,NA18571,NA18576,NA18608,NA18609,NA18612,NA18635,NA18637,NA18854,NA18855,NA18857,NA18858,NA18860,NA18861,NA18863,NA18912,NA18914,NA18940,NA18952,NA18968,NA18969,NA18971,NA18972,NA18974,NA18976,NA18981,NA18992,NA18998,NA19003,NA19012,NA19092,NA19093,NA19094,NA19099,NA19100,NA19101,NA19102,NA19116,NA19127,NA19129,NA19131,NA19132,NA19140,NA19141,NA19142,NA19144,NA19145,NA19153,NA19159,NA19192,NA19200,NA19201,NA19202,NA19204,NA19206,NA19207,NA19210,NA19211 nsv522206 4 117904006 117907004 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694981 S 2026 1 0 "" nsv10554 4 117920899 117928700 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12609,nssv13371 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA12740,NA18860 nsv441909 4 118004720 118007156 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv830043 4 118123428 118264493 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443916 S 95 0 1 "" nsv521984 4 118303891 118337338 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694752 S 2026 0 1 "" nsv518806 4 118480291 118561680 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696260 S 2026 1 0 "" nsv818264 4 118544868 118573456 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417858 S 112 1 0 "" NA18852 nsv508307 4 118574610 118596973 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622498 S 4 0 1 "" NA18994 nsv4484 4 118750210 118783765 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7995 S 9 1 0 "" NA12156 dgv1668e1 4 118836451 120032345 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv23855,esv746,essv19300 M 271 0 0 "" NA07022 nsv292092 4 118862842 118862978 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310670 M 24 "" nsv461630 4 118884883 118894432 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538003 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01262 nsv436963 4 118900961 118905001 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv466844 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA07019 esv34354 4 118921942 119945714 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6980300,essv6990466,essv6987046,essv6980302,essv6980301 M 771 1 0 "" NA07022 nsv437933 4 118970757 118975693 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv468593,nssv468591,nssv468592,nssv468594 M 269 0 4 Samples from several populations that are part of the HapMap project. "" NA07000,NA07029,NA19210,NA19211 nsv523419 4 118993201 119010052 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699172 S 2026 0 1 "" nsv291653 4 119018836 119018928 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310231 M 24 "" nsv10555 4 119080746 119083154 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11591 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA12872 nsv519017 4 119186410 120129084 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696485 S 2026 0 1 "" nsv4485 4 119460952 119501937 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv409,nssv7117 M 9 0 2 "" NA12156,NA19240 nsv10556 4 119473487 119488147 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12474,nssv12811,nssv13587,nssv11621,nssv12603,nssv14123,nssv13482,nssv12418 M 31 0 8 Samples from several populations that are part of the HapMap project. "" NA07048,NA12872,NA18502,NA18972,NA18975,NA19132,NA19144,NA19240 nsv291334 4 119483015 119487802 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309912 M 24 "" nsv10557 4 119512552 119516290 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13617,nssv12355 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18980,NA19132 nsv10558 4 119592179 119601538 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14460 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19221 nsv461631 4 119619542 119666206 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538004 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01090 nsv525540 4 119636701 119660627 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701676 S 2026 0 1 "" dgv169n6 4 119653946 119654294 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv291464,nsv293055 M 24 "" nsv830044 4 119696305 119851137 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443917,nssv1443921,nssv1443920,nssv1443919 M 95 0 4 "" nsv507190 4 119734500 119740500 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622899,nssv621760 M 4 2 0 "" NA10860,NA18994 nsv4486 4 119756655 119783919 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7996 S 9 0 1 "" NA12156 essv11621 4 119851522 120032345 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19154 nsv516777 4 120090969 120120554 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv678971,nssv670760 M 2026 2 0 "" nsv289598 4 120161368 120169455 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308176 M 24 "" nsv522652 4 120307563 120307789 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv706052 S 2026 0 1 "" nsv522386 4 120366750 120472982 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695165 S 2026 1 0 "" nsv291815 4 120371420 120371743 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310393 M 24 "" nsv4488 4 120384719 120419761 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv410 S 9 1 0 "" NA19240 nsv507191 4 120419126 120425126 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621761,nssv617641,nssv620261 M 4 3 0 "" CHM,NA10860,NA15510 dgv170n6 4 120602162 120602521 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv290888,nsv290094 M 24 "" nsv509926 4 120954282 120960282 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618183,nssv621244,nssv623958,nssv622066 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv441910 4 120962463 120966871 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv436965 4 121304503 121311093 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv466846 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA10860 nsv436964 4 121304503 121321790 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv466845 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA10831 nsv437934 4 121308809 121310556 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv468597,nssv468595,nssv468599,nssv468598 M 269 0 4 Samples from several populations that are part of the HapMap project. "" NA10831,NA10860,NA11993,NA12155 nsv528554 4 121325673 121326692 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705167 S 2026 0 1 "" nsv292708 4 121444699 121444903 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311286 M 24 "" nsv437421 4 121447645 121470767 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467302 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18872 nsv527506 4 121453758 121454918 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703959 S 2026 0 1 "" nsv4489 4 121468891 121502659 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3137,nssv7118,nssv411,nssv4780,nssv11090 M 9 5 0 "" NA12156,NA15510,NA18555,NA19129,NA19240 nsv259 4 121487181 121500482 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv259 S 1 1 0 "" NA15510 nsv509015 4 121494565 121536885 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623416 S 4 1 0 "" NA18994 nsv441911 4 121881184 121901024 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv516202 4 121890163 121902743 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv674172,nssv656787,nssv690871,nssv685052,nssv663289,nssv690349,nssv693066,nssv672422,nssv663132,nssv682421,nssv666791,nssv687332 M 2026 0 12 "" dgv50n64 4 121890163 121903419 CNV Loss Wang_et_al_2007 17921354 SNP_array nsv818266,nsv818265 M 112 0 2 "" NA18516,NA19119 nsv461634 4 121980662 122123132 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538005 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01238 nsv507192 4 121999950 122005950 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617642 S 4 1 0 "" CHM nsv4490 4 122140544 122158851 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7997 S 9 0 1 "" NA12156 nsv292623 4 122166548 122166864 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311201 M 24 "" nsv4491 4 122168938 122203516 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv412 S 9 1 0 "" NA19240 nsv292164 4 122282166 122282166 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310742 M 24 "" nsv507193 4 122313796 122319796 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620262,nssv617643,nssv622900,nssv621762 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv4492 4 122384262 122417161 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7119 S 9 1 0 "" NA12156 nsv4493 4 122521348 122543586 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7998 S 9 0 1 "" NA12156 nsv4494 4 122614443 122648066 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2480 S 9 0 1 "" NA18555 nsv437422 4 122634481 122649127 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467303 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18506 nsv508308 4 122636502 122670324 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617497 S 4 0 1 "" CHM nsv10559 4 122639003 122649902 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11479,nssv12326,nssv12478,nssv14490 M 31 0 4 Samples from several populations that are part of the HapMap project. "" NA18572,NA19007,NA19144,NA19221 nsv442920 4 122640073 122642921 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv516414 4 122642868 122643673 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv662207,nssv672423,nssv688708,nssv671300,nssv668213,nssv673384,nssv658887,nssv678819,nssv677494,nssv675282 M 2026 0 10 "" nsv528104 4 122642868 122649127 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704645 S 2026 0 1 "" nsv292673 4 122644389 122644440 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311251 M 24 "" nsv10560 4 122651102 122655195 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14520 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19221 nsv4495 4 122667688 122712716 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7999 S 9 0 1 "" NA12156 nsv516606 4 122700180 122754611 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv672934,nssv673092,nssv701451,nssv669516,nssv688228,nssv689942,nssv680051 M 2026 0 7 "" nsv524923 4 122743088 122756943 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700936 S 2026 0 1 "" nsv526872 4 122756943 122759245 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703230 S 2026 1 0 "" nsv507194 4 122793931 122799931 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622901,nssv621763,nssv620264,nssv617644 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv509927 4 122826608 122832608 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618184,nssv621245 M 4 0 2 "" CHM,NA15510 nsv508309 4 123021396 123038250 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618751 S 4 0 1 "" NA10860 nsv507195 4 123110495 123116495 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620265,nssv617645,nssv621764,nssv622902 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv293483 4 123344036 123350395 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv312061 M 24 "" nsv830045 4 123349655 123587196 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443922 S 95 0 1 "" nsv526361 4 123360746 123399459 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702654 S 2026 0 1 "" nsv507196 4 123369604 123375604 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622903 S 4 1 0 "" NA18994 nsv4496 4 123607737 123641857 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv413 S 9 1 0 "" NA19240 nsv290163 4 124080517 124081776 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308741 M 24 "" nsv830046 4 124364834 124526722 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443923 S 95 1 0 "" nsv4497 4 124382480 124427369 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8000 S 9 0 1 "" NA12156 nsv508310 4 124484249 124515243 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619941 S 4 0 1 "" NA15510 nsv507197 4 124487261 124493261 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622904 S 4 1 0 "" NA18994 dgv1669e1 4 124568831 125736952 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2920,esv774,essv1398 M 271 0 0 "" NA19007 nsv10562 4 124607299 125613731 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11992,nssv12127,nssv12648,nssv12290,nssv12869,nssv13647,nssv13478,nssv12504,nssv12047,nssv29167,nssv12356,nssv14153,nssv12062,nssv11946,nssv12618,nssv12604,nssv12385,nssv12508,nssv11705,nssv13401,nssv14183 M 31 10 11 Samples from several populations that are part of the HapMap project. "" NA07029,NA10839,NA10847,NA10863,NA11830,NA12155,NA12802,NA18563,NA18564,NA18853,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19144,NA19173 esv34581 4 124628926 125605000 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6978360,essv6978361,essv6978362,essv6978363,essv6978364 M 771 1 0 "" NA19007 nsv293467 4 124690352 124693165 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv312045 M 24 "" nsv516959 4 124700114 124702322 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv669017,nssv661330,nssv684323,nssv666832,nssv663762,nssv671943,nssv693805,nssv656015,nssv664205,nssv685463,nssv673057,nssv664041,nssv651892,nssv691808,nssv652941,nssv668110,nssv692383,nssv672535,nssv661074,nssv667606,nssv679178,nssv661694,nssv660631,nssv680438,nssv684136,nssv692655,nssv673033,nssv657969,nssv681262,nssv659924,nssv675906,nssv693439,nssv690004,nssv663802,nssv659968,nssv679904,nssv676269,nssv661024,nssv685848,nssv661846,nssv661421,nssv674348,nssv693997,nssv667629,nssv654866,nssv663581,nssv692099,nssv684461,nssv669517,nssv682270,nssv680657,nssv681915,nssv675350,nssv664856,nssv665953,nssv679441,nssv658231,nssv660756,nssv671530,nssv667204,nssv667849,nssv691486,nssv661962,nssv683512,nssv683979,nssv674004,nssv676756,nssv676508,nssv693862,nssv687702,nssv681007,nssv671574,nssv675773,nssv692067,nssv692333,nssv686816,nssv685210,nssv685230,nssv691166,nssv655843,nssv660842,nssv688965,nssv666792,nssv685605,nssv658997,nssv653624,nssv677068,nssv664319,nssv664580,nssv655268,nssv687092,nssv689516,nssv651912,nssv692219,nssv666618,nssv687942,nssv668994,nssv653907,nssv674908,nssv687160,nssv690244,nssv687333,nssv666631,nssv684681,nssv660135,nssv689465,nssv692249,nssv689202,nssv660567,nssv677308,nssv659306,nssv683029,nssv675369,nssv690222,nssv656100,nssv666264,nssv684699,nssv653510,nssv690313,nssv683694 M 2026 0 120 "" nsv469710 4 124831891 124981327 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649731 M 265 0 0 Samples from several populations that are part of the HapMap project. "" nsv830047 4 124861656 125056747 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443924 S 95 1 0 "" esv33037 4 124918239 124921533 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100664 S 51 0 1 "" 21656 nsv830049 4 125151537 125313313 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443925 S 95 0 1 "" nsv4499 4 125473236 125492353 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3279 S 9 1 0 "" NA12878 nsv517857 4 125505019 125606094 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695261 S 2026 1 0 "" nsv507198 4 125546780 125552780 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622905 S 4 1 0 "" NA18994 nsv4500 4 125649248 125694876 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7120 S 9 0 1 "" NA12156 nsv519372 4 125676490 125682562 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696818 S 2026 1 0 "" nsv521095 4 125797271 125802009 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv682065,nssv684462 M 2026 0 2 "" dgv1670e1 4 125995545 126007226 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv920,essv15911 M 271 0 0 "" NA19205 nsv290860 4 126029358 126029676 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309438 M 24 "" nsv437423 4 126063549 126065378 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467304 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19139 nsv830050 4 126075463 126246168 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443926 S 95 1 0 "" nsv4501 4 126105551 126140770 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3280 S 9 1 0 "" NA12878 nsv524519 4 126184231 126199692 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700465 S 2026 1 0 "" nsv818268 4 126195505 126203723 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417860 S 112 1 0 "" NA18852 nsv516207 4 126199497 126203723 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv662932,nssv652630,nssv694885 M 2026 0 3 "" nsv289890 4 126224979 126225307 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308468 M 24 "" nsv830051 4 126592500 126761031 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443927 S 95 0 1 "" nsv293666 4 126855140 126855140 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv312244 M 24 "" nsv461636 4 126897910 126950909 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538006 S 1557 0 1 "" NINDS_2 nsv830052 4 126935432 127107658 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443928,nssv1443930 M 95 1 1 "" nsv441912 4 126965101 126982053 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv528163 4 127051974 127053913 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704712 S 2026 0 1 "" nsv526040 4 127247931 127255865 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702273 S 2026 0 1 "" nsv830053 4 127274570 127454334 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443931 S 95 0 1 "" nsv289502 4 127377980 127381843 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308080 M 24 "" nsv293416 4 127379731 127379808 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311994 M 24 "" nsv437425 4 127388166 127406972 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467306 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19173 nsv508311 4 127460990 127482864 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622499 S 4 0 1 "" NA18994 nsv830054 4 127513180 127689154 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443932 S 95 0 1 "" nsv524303 4 127677507 127687342 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700204 S 2026 0 1 "" nsv526498 4 127705004 127719996 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702807 S 2026 0 1 "" nsv4502 4 127753635 127787521 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8001 S 9 1 0 "" NA12156 nsv524850 4 127828508 128126454 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700852 S 2026 0 1 "" esv2752024 4 127942302 128029547 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6982456,essv6989305,essv6982457 M 771 0 1 "" BEC_447 nsv818269 4 128058033 128084759 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416726 S 112 0 1 "" NA19159 nsv830055 4 128152480 128351426 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443933 S 95 1 0 "" nsv291504 4 128695928 128695985 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310082 M 24 "" nsv830056 4 128874744 129034162 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443934 S 95 0 1 "" nsv830057 4 128948893 129146382 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443935 S 95 0 1 "" nsv290569 4 129014648 129021890 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309147 M 24 "" nsv437935 4 129047541 129061555 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv468601,nssv468600 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA19132,NA19239 nsv292512 4 129564854 129564854 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311090 M 24 "" nsv4503 4 129616077 129651062 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3281 S 9 1 0 "" NA12878 nsv509928 4 129699752 129705752 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623959 S 4 0 1 "" NA18994 nsv519852 4 129885261 129932532 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697086 S 2026 0 1 "" nsv526988 4 130039981 130045652 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703361 S 2026 0 1 "" nsv517249 4 130095933 130285409 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv676828,nssv684082,nssv654121,nssv666372 M 2026 4 0 "" nsv4504 4 130134973 130161564 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8002 S 9 0 1 "" NA12156 nsv4505 4 130174155 130206817 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8003 S 9 1 0 "" NA12156 nsv522694 4 130219678 130352295 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv706104 S 2026 0 1 "" esv32790 4 130411240 130415778 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98933,essv99781 M 51 2 0 "" 21606,22086 esv32610 4 130419947 130423096 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97117 S 51 0 1 "" 22075 nsv509929 4 130423006 130429006 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618185 S 4 0 1 "" CHM esv33148 4 130424364 130426008 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98862,essv100795,essv98216,essv96981,essv97241,essv100022 M 51 6 0 "" 21606,21656,21772,21817,22075,22086 esv32740 4 130432088 130437806 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98729,essv99846 M 51 0 2 "" 21606,22086 nsv527248 4 130444737 130446262 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703650 S 2026 0 1 "" nsv830058 4 130493630 130673076 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443937,nssv1443936 M 95 2 0 "" nsv293074 4 130500892 130500961 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311652 M 24 "" nsv293184 4 130500906 130501139 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311762 M 24 "" nsv290744 4 130638436 130640541 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309322 M 24 "" nsv830060 4 130672672 130828630 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443938 S 95 1 0 "" nsv290223 4 130765159 130765272 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308801 M 24 "" nsv4506 4 130828824 130861642 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4781 S 9 1 0 "" NA19129 nsv437426 4 130860183 130880884 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467307 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19240 nsv437936 4 130864662 130876011 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv468603,nssv468602 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA19239,NA19240 nsv523994 4 131096228 131131617 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699850 S 2026 0 1 "" nsv507199 4 131129777 131135777 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621765 S 4 1 0 "" NA10860 nsv507200 4 131166238 131172238 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620266 S 4 1 0 "" NA15510 nsv461640 4 131319868 131361210 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538008 S 1557 0 1 "" NINDS_183 nsv293151 4 131400872 131401556 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311729 M 24 "" nsv830061 4 131422450 131586315 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443939 S 95 1 0 "" nsv437427 4 131520600 131536072 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467308 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19094 nsv830062 4 131533689 131671567 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443941 S 95 0 1 "" nsv10563 4 131539254 131629682 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14550 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19221 nsv527784 4 131588559 131698257 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704275 S 2026 1 0 "" esv2422209 4 131849410 131993658 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161393 S 181 1 0 "" ND01700 nsv818270 4 131897100 131903198 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416340,nssv1416341 M 112 0 2 "" NA18855,NA18857 nsv461641 4 131897623 131947025 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538009 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00088 nsv461642 4 131926753 132106932 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538010 S 1557 1 0 "" NINDS_22 nsv509930 4 131975090 131981090 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618186,nssv623960,nssv622067 M 4 0 3 "" CHM,NA10860,NA18994 nsv526582 4 132053036 132091126 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702900 S 2026 1 0 "" nsv830063 4 132197518 132358314 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443942 S 95 0 1 "" nsv526955 4 132200044 132243986 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703327 S 2026 0 1 "" dgv1671e1 4 132219682 132762927 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv24162,essv18838,essv23709,essv21377 M 271 0 0 "" NA12740,NA12751 esv511 4 132219682 133363089 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent + Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 "" dgv188e55 4 132253742 132771747 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv34850,esv35031,esv2752025 M 771 3 0 "" NA12740,NA12751,SPC_63 nsv830064 4 132288879 132439122 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443943 S 95 0 1 "" nsv515647 4 132298938 132705494 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv661579,nssv685911,nssv664234 M 2026 3 0 "" nsv10564 4 132301598 132720578 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12639,nssv14580,nssv13512,nssv12415 M 31 1 3 Samples from several populations that are part of the HapMap project. "" NA12740,NA18502,NA18980,NA19221 nsv441913 4 132303979 132715798 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv461643 4 132303980 132705494 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538011 S 1557 1 0 "" 1780862457_A nsv818271 4 132303980 132705494 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415952,nssv1415951 M 112 2 0 "" NA12740,NA12751 nsv509931 4 132392000 132398000 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621246 S 4 0 1 "" NA15510 nsv525200 4 132458026 132884946 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701281 S 2026 0 1 "" nsv4507 4 132477638 132499820 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10421 S 9 1 0 "" NA18956 nsv291740 4 132480140 132480339 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310318 M 24 "" nsv830065 4 132491859 132695921 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443944 S 95 1 0 "" nsv292256 4 132532045 132532045 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310834 M 24 "" dgv1672e1 4 132581414 133288331 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv5722,essv9923,essv3547 M 271 0 0 "" NA18593,NA18965,NA19145 nsv830066 4 132607499 132704146 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443945 S 95 1 0 "" nsv830067 4 132656842 132753872 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443946 S 95 1 0 "" essv23708 4 132781976 132855491 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12740 nsv10565 4 132791879 132794407 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12899 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19173 nsv10566 4 132847980 132851915 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12841,nssv13544,nssv12538,nssv12320,nssv13783 M 31 0 5 Samples from several populations that are part of the HapMap project. "" NA18504,NA18517,NA18853,NA19144,NA19240 nsv292243 4 132848014 132851238 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310821 M 24 "" nsv4508 4 132871365 132916304 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8004 S 9 0 1 "" NA12156 essv23695 4 132883456 132959908 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12740 nsv10567 4 132934869 133001890 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12077 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18563 nsv509932 4 132935784 132941784 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623961,nssv621247 M 4 0 2 "" NA15510,NA18994 nsv830068 4 132938381 133158102 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443947 S 95 0 1 "" nsv437938 4 132945287 132952716 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv468604,nssv468606,nssv468605 M 269 0 3 Samples from several populations that are part of the HapMap project. "" NA06994,NA12864,NA12872 dgv1673e1 4 132955042 133085203 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv10462,essv2868 M 271 0 0 "" NA18515,NA18953 dgv1674e1 4 132955042 133363089 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv17561,essv14384,essv3213,essv21289,essv14139,essv8325,essv20279,essv15141,essv11976,essv9426,essv5265,essv1763,essv3774,essv24292,essv908,essv22106,essv7758,essv12760,essv21323,essv6003,essv15530,essv5593,essv12607,essv5786,essv7613,essv11080,essv11652,essv24786,essv1877,essv843,essv24426,essv1035,essv17319,essv6946,essv10903,essv16630,essv3136,essv7357,essv12301,essv17000,essv23506,essv1433,essv4874,essv15547,essv19633,essv9228,essv6782,essv12692,essv5104,essv8249,essv10206,essv18444,essv5388,essv2248,essv21674,essv6840,essv19440,essv4043,essv2784,essv23435,essv14463,essv4630,essv9338,essv10666,essv19222,essv21166,essv13765,essv24595,essv11501,essv6597,essv18159,essv15319,essv21417,essv17164,essv2017,essv16743,essv7278,essv15681,essv682,essv9700,essv15782,essv24878,essv13193,essv17968,essv1618,essv12854,essv3798,essv23214,essv9079,essv18287,essv18949,essv17784,essv3405,essv16194,essv3722,essv22813,essv20658,essv14732,essv487,essv1938,essv16395,essv11924,essv8477,essv16862,essv2680,essv7036,essv115,essv5190,essv20426,essv3997,essv14059,essv10288 M 271 0 0 "" NA07000,NA07034,NA10830,NA10831,NA10838,NA10846,NA10854,NA10855,NA10856,NA10857,NA10860,NA11830,NA11831,NA11840,NA11992,NA11993,NA12003,NA12004,NA12005,NA12144,NA12155,NA12156,NA12248,NA12707,NA12717,NA12762,NA12878,NA12892,NA18500,NA18502,NA18505,NA18506,NA18507,NA18516,NA18517,NA18529,NA18542,NA18545,NA18561,NA18562,NA18563,NA18566,NA18570,NA18571,NA18577,NA18579,NA18582,NA18592,NA18594,NA18611,NA18612,NA18621,NA18624,NA18635,NA18853,NA18855,NA18856,NA18861,NA18862,NA18872,NA18912,NA18913,NA18914,NA18942,NA18943,NA18944,NA18945,NA18947,NA18949,NA18952,NA18959,NA18961,NA18966,NA18967,NA18968,NA18969,NA18970,NA18973,NA18974,NA18975,NA18976,NA18987,NA18997,NA19000,NA19005,NA19098,NA19102,NA19103,NA19116,NA19120,NA19128,NA19129,NA19131,NA19132,NA19137,NA19138,NA19139,NA19140,NA19142,NA19144,NA19152,NA19153,NA19154,NA19159,NA19161,NA19171,NA19173,NA19201,NA19205,NA19208,NA19209,NA19211 nsv508312 4 132996309 133058137 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619942 S 4 0 1 "" NA15510 nsv509016 4 132996309 133059260 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618027,nssv619384,nssv623417 M 4 3 0 "" CHM,NA10860,NA18994 nsv10568 4 132999479 133253328 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14610,nssv14640,nssv13491,nssv12136,nssv12633,nssv12871,nssv13461,nssv12137,nssv12669,nssv13813 M 31 5 5 Samples from several populations that are part of the HapMap project. "" NA07048,NA12740,NA18504,NA18552,NA18563,NA18860,NA19221,NA19240 nsv4510 4 132999869 133047332 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3282,nssv11091 M 9 0 2 "" NA12878,NA15510 nsv260 4 133011660 133047332 CNV Loss Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv260 S 1 0 1 "" NA15510 nsv4511 4 133029799 133043034 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3283 S 9 1 0 "" NA12878 dgv1675e1 4 133114812 133288331 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv302,essv14895,essv214,essv4144,essv592,essv10002,essv7151,essv8805,essv6168,essv1246,essv12465,essv11032,essv7372,essv13039,essv24731,essv13868,essv8335,essv13451,essv17700,essv20619,essv1172,essv10097 M 271 0 0 "" NA07056,NA11829,NA12872,NA18508,NA18522,NA18532,NA18547,NA18555,NA18623,NA18852,NA18854,NA18858,NA18948,NA18951,NA18978,NA18995,NA18998,NA19099,NA19130,NA19143,NA19192,NA19207 nsv830069 4 133123563 133299949 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443950,nssv1443954,nssv1443953,nssv1443956,nssv1443952,nssv1443955,nssv1443948,nssv1443949 M 95 1 7 "" nsv10569 4 133328344 133330822 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12663,nssv12699 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA07048,NA12740 dgv171n6 4 133457633 133457971 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv292874,nsv292505 M 24 "" dgv1676e1 4 133511465 133655754 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv213,essv17839 M 271 0 0 "" NA10831 nsv461645 4 133517860 133650727 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538012 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01167 nsv10570 4 133531398 133540985 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12678,nssv13521,nssv13508,nssv13574,nssv12015,nssv12350,nssv12929,nssv12157,nssv29197,nssv12022,nssv11976,nssv12901,nssv12475,nssv11509,nssv13542,nssv12534,nssv12568,nssv11651,nssv12122 M 31 0 19 Samples from several populations that are part of the HapMap project. "" NA07029,NA10863,NA11830,NA12155,NA12802,NA12872,NA18502,NA18517,NA18537,NA18564,NA18572,NA18853,NA18860,NA18942,NA18975,NA18980,NA19144,NA19173,NA19240 nsv10571 4 133606442 133615102 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12693 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA07048 nsv526815 4 133705365 133714809 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703169 S 2026 1 0 "" nsv830071 4 133752601 133905340 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443957,nssv1443958,nssv1443960,nssv1443959 M 95 4 0 "" nsv818272 4 133776881 133789026 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418365 S 112 1 0 "" NA10847 nsv4512 4 133796057 133829113 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8006 S 9 1 0 "" NA12156 nsv515860 4 133967068 133980809 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv669322,nssv662823,nssv670169,nssv658025,nssv689403,nssv687890,nssv669661,nssv687591,nssv665046 M 2026 0 9 "" nsv461646 4 133979277 134060873 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538013 S 1557 0 1 "" 1798860567_A nsv818273 4 134043242 134089480 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415636 S 112 0 1 "" NA10835 nsv4513 4 134046817 134081084 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv414 S 9 1 0 "" NA19240 nsv4514 4 134077427 134086038 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8007 S 9 0 1 "" NA12156 nsv4515 4 134089199 134134532 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7121 S 9 0 1 "" NA12156 nsv293223 4 134181410 134181410 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311801 M 24 "" nsv518649 4 134216535 134276351 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696098 S 2026 0 1 "" nsv508313 4 134229656 134239873 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619943 S 4 0 1 "" NA15510 nsv830072 4 134281300 134405187 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443961,nssv1443965,nssv1443964 M 95 1 2 "" nsv508314 4 134291099 134322248 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619944 S 4 0 1 "" NA15510 nsv4516 4 134301482 134331808 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10422 S 9 1 0 "" NA18956 nsv830073 4 134472681 134616234 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443967,nssv1443966,nssv1443970,nssv1443969,nssv1443968,nssv1443972,nssv1443971 M 95 0 7 "" nsv290518 4 134490255 134490858 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309096 M 24 "" nsv830074 4 134497927 134686474 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443973 S 95 0 1 "" nsv292829 4 134499223 134499531 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311407 M 24 "" nsv830075 4 134588278 134774374 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443975 S 95 1 0 "" nsv4517 4 134646069 134687378 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8008 S 9 0 1 "" NA12156 nsv523772 4 134749685 134760796 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699594 S 2026 0 1 "" nsv509933 4 134891779 134897779 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622068 S 4 0 1 "" NA10860 nsv4518 4 135042812 135077164 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3284 S 9 1 0 "" NA12878 nsv818274 4 135149832 135172641 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417343 S 112 1 0 "" NA18609 nsv289900 4 135151788 135151788 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308478 M 24 "" nsv292643 4 135152052 135152052 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311221 M 24 "" nsv520680 4 135279970 135553287 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv673952,nssv692757 M 2026 0 2 "" nsv461648 4 135378515 135521366 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538014 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00019 nsv290685 4 135426532 135436520 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309263 M 24 "" nsv507201 4 135468118 135474118 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617646 S 4 1 0 "" CHM nsv507202 4 135489909 135495909 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622907 S 4 1 0 "" NA18994 nsv4519 4 135513552 135548036 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv415 S 9 1 0 "" NA19240 nsv437428 4 135618370 135622213 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467309 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19240 nsv509934 4 135765453 135771453 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623962,nssv618187,nssv621248 M 4 0 3 "" CHM,NA15510,NA18994 nsv289702 4 135790613 135793306 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308280 M 24 "" nsv525396 4 135796329 135904899 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701519 S 2026 0 1 "" nsv818275 4 135854794 135904899 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417861 S 112 1 0 "" NA18852 nsv290959 4 135948110 135948875 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309537 M 24 "" esv2422408 4 135997115 136303588 CNV Deletion Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161242 S 181 0 1 "" ND03627 nsv4522 4 136008284 136042283 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3285 S 9 1 0 "" NA12878 nsv461652 4 136132843 136436598 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538015 S 1557 0 1 "" NINDS_147 nsv524430 4 136185495 136190342 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700357 S 2026 0 1 "" dgv172n6 4 136285142 136285477 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv290682,nsv290784 M 24 "" nsv293348 4 136286579 136286706 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311926 M 24 "" nsv293093 4 136286665 136286775 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311671 M 24 "" nsv522536 4 136587002 136677252 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705910 S 2026 0 1 "" nsv520459 4 136868741 136869004 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv674416,nssv676429,nssv687891,nssv671649,nssv687618 M 2026 0 5 "" nsv461653 4 137011199 137067435 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538016 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00863 nsv830076 4 137064432 137207149 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443976 S 95 1 0 "" nsv522276 4 137084908 137087335 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695057 S 2026 0 1 "" nsv289730 4 137593003 137593003 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308308 M 24 "" nsv507203 4 137623560 137629560 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622908,nssv617647 M 4 2 0 "" CHM,NA18994 nsv4523 4 137651379 137686531 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv416 S 9 1 0 "" NA19240 nsv830077 4 137663475 137830858 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443977 S 95 1 0 "" nsv441914 4 137716652 137721801 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv517102 4 137717522 137722425 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv674315,nssv672743,nssv696920,nssv657996,nssv664989,nssv693067,nssv681536,nssv686880,nssv676996,nssv666562,nssv653790,nssv673796 M 2026 0 12 "" nsv526257 4 137786378 137821496 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702529 S 2026 0 1 "" nsv524924 4 137890912 137893523 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700937 S 2026 1 0 "" nsv291383 4 137899223 137899292 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309961 M 24 "" nsv461656 4 137931876 137975676 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538017 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01312 nsv4524 4 137989809 138021143 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4782 S 9 1 0 "" NA19129 nsv290118 4 138035233 138037956 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308696 M 24 "" nsv520058 4 138053064 138056480 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv662719,nssv678762,nssv660340 M 2026 0 3 "" nsv461657 4 138119091 138171908 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538018 S 1557 0 1 "" 1780862227_A nsv515788 4 138196016 138198324 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv664787,nssv670170,nssv657424,nssv661075 M 2026 0 4 "" nsv818276 4 138196016 138203376 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416842 S 112 0 1 "" NA19239 nsv830078 4 138209084 138406253 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443980,nssv1443979,nssv1443978 M 95 0 3 "" nsv437429 4 138295970 138303317 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467310 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18860 nsv818277 4 138332585 138341836 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418366 S 112 1 0 "" NA10847 dgv328n21 4 138373801 138421687 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv528525,nsv520910 M 2026 0 2 "" nsv516176 4 138410289 138850966 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698797,nssv679926,nssv677600,nssv690005,nssv700682,nssv688429,nssv659809,nssv674614,nssv659307,nssv667155,nssv659251,nssv681898,nssv685714,nssv654850,nssv691528,nssv698989,nssv675217,nssv685668,nssv673572,nssv667507,nssv676666,nssv666632 M 2026 2 20 "" nsv508316 4 138431679 138460351 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622500,nssv618752 M 4 0 2 "" NA10860,NA18994 nsv4525 4 138438626 138472589 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2481 S 9 0 1 "" NA18555 nsv289524 4 138443543 138443543 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308102 M 24 "" dgv101n17 4 138448373 138460918 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437432,nsv436966,nsv437430,nsv437433,nsv437431 M 60 0 5 "" NA12752,NA18872,NA19100,NA19103,NA19120 nsv10573 4 138448993 138458618 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12006,nssv12166,nssv13572,nssv11681,nssv12152,nssv11735,nssv13604 M 31 0 7 Samples from several populations that are part of the HapMap project. "" NA07029,NA10847,NA10863,NA12872,NA18502,NA18517,NA18552 nsv442921 4 138449800 138451019 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv437939 4 138450499 138455469 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv468610,nssv468608,nssv468622,nssv468613,nssv468616,nssv468611,nssv468615,nssv468626,nssv468623,nssv468625,nssv468627,nssv468624,nssv468620,nssv468609,nssv468612,nssv468617,nssv468619,nssv468614,nssv468621 M 269 0 19 Samples from several populations that are part of the HapMap project. "" NA10830,NA10838,NA10863,NA12003,NA12043,NA12154,NA12234,NA12752,NA12760,NA18861,NA18863,NA18871,NA18872,NA19098,NA19100,NA19101,NA19103,NA19116,NA19120 dgv1677e1 4 138482863 138654737 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv272,essv15125 M 271 0 0 "" NA19129 nsv10574 4 138513259 138524036 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13551 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18860 dgv102n17 4 138527289 138552381 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv436968,nsv436967 M 60 0 2 "" NA10859,NA12801 nsv433222 4 138529500 138541554 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463103 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA18517 nsv10575 4 138537443 138552399 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11711,nssv14213,nssv12045,nssv12729,nssv12036,nssv29227,nssv12723,nssv13843,nssv12052,nssv13581,nssv13602,nssv12380,nssv12196,nssv12931,nssv12386,nssv13538,nssv13677,nssv11795,nssv12598,nssv12634,nssv12708,nssv11539,nssv12187,nssv14670,nssv12959,nssv12182,nssv12167,nssv12505,nssv12564,nssv13634 M 31 30 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10847,NA10863,NA11830,NA12155,NA12740,NA12802,NA12872,NA18502,NA18504,NA18517,NA18537,NA18552,NA18563,NA18564,NA18572,NA18853,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19144,NA19173,NA19221,NA19240 nsv461658 4 138538349 138544957 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538019 S 1557 0 1 "" 1780862587_A nsv818279 4 138538349 138544957 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416233,nssv1418063,nssv1416055,nssv1416056,nssv1418062,nssv1416232 M 112 0 6 "" NA10851,NA10859,NA11882,NA12056,NA12801,NA12812 nsv441915 4 138540038 138549575 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv437940 4 138541268 138543618 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv468633,nssv468632,nssv468631,nssv468628 M 269 0 4 Samples from several populations that are part of the HapMap project. "" NA10859,NA11882,NA12801,NA12812 nsv293629 4 138569236 138569236 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv312207 M 24 "" nsv10576 4 138584115 138586147 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12961 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19240 nsv4526 4 138628546 138661834 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2482 S 9 1 0 "" NA18555 nsv293760 4 138656611 138656611 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv312338 M 24 "" nsv441916 4 138682150 138687598 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv830079 4 138845422 139016117 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443981 S 95 1 0 "" dgv1678e1 4 138897853 139070702 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv24285,esv358 M 271 0 0 "" NA10856 nsv830080 4 139310423 139502331 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443982 S 95 1 0 "" dgv173n6 4 139323817 139324823 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv292905,nsv293591 M 24 "" nsv526874 4 139334778 139352009 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703232 S 2026 0 1 "" nsv290617 4 139413948 139414007 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309195 M 24 "" nsv293626 4 139413976 139414035 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv312204 M 24 "" nsv508317 4 139458368 139546185 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618753 S 4 0 1 "" NA10860 nsv526177 4 139486860 139513409 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702438 S 2026 0 1 "" dgv1679e1 4 139502133 139670493 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv18076,esv424 M 271 0 0 "" NA12145 nsv818280 4 139507888 139533300 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417153 S 112 1 0 "" NA18542 nsv830082 4 139522286 139678670 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443983,nssv1443986,nssv1443984 M 95 1 2 "" nsv522497 4 139533300 139536499 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705865 S 2026 0 1 "" nsv10577 4 139657665 139661804 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12664 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA10839 nsv289861 4 139704872 139704969 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308439 M 24 "" nsv4527 4 139799259 139845461 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2483,nssv4783,nssv417,nssv3287 M 9 0 4 "" NA12878,NA18555,NA19129,NA19240 nsv508318 4 139805280 139847005 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618754,nssv622501,nssv617498 M 4 0 3 "" CHM,NA10860,NA18994 nsv292523 4 139836899 139843095 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311101 M 24 "" nsv523762 4 139839940 139840563 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699583 S 2026 0 1 "" nsv520347 4 139840308 139840563 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694376 S 2026 0 1 "" nsv4528 4 139840533 139875113 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3288 S 9 1 0 "" NA12878 nsv520167 4 139885993 139887915 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697259 S 2026 0 1 "" nsv509935 4 139935549 139941549 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621249 S 4 0 1 "" NA15510 nsv830083 4 139968007 140123240 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443987 S 95 0 1 "" nsv461659 4 140222204 140267319 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538020 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00197 nsv523750 4 140250292 140273488 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699567 S 2026 0 1 "" nsv291024 4 140429855 140429855 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309602 M 24 "" nsv519918 4 140453889 140457373 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697125 S 2026 0 1 "" nsv442922 4 140591128 140595965 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv4529 4 140599469 140631273 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10423 S 9 1 0 "" NA18956 nsv830084 4 140604862 140757491 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443988 S 95 0 1 "" nsv830085 4 140672266 140864927 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443989,nssv1443990,nssv1443991 M 95 0 3 "" nsv830086 4 140773510 140949976 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443992 S 95 1 0 "" nsv515669 4 140885281 140889099 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv664320,nssv689002,nssv695697,nssv668052,nssv684441,nssv665876,nssv664788,nssv675735,nssv663709,nssv682606,nssv689680,nssv667349,nssv675673,nssv679598,nssv685302,nssv687892,nssv655154,nssv677326 M 2026 0 18 "" nsv522063 4 140906318 140907084 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694833 S 2026 0 1 "" nsv525242 4 141017997 141021226 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701332 S 2026 0 1 "" nsv290100 4 141060290 141068975 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308678 M 24 "" nsv291396 4 141164536 141164691 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309974 M 24 "" nsv830087 4 141198547 141288106 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443993,nssv1443994 M 95 2 0 "" nsv292145 4 141348464 141352936 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310723 M 24 "" nsv830088 4 141715715 141882553 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443995 S 95 1 0 "" nsv527102 4 141715837 141730090 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703482 S 2026 0 1 "" nsv830089 4 141882299 142106568 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443997,nssv1443998 M 95 1 1 "" nsv528137 4 142067751 142093012 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704682 S 2026 0 1 "" nsv292978 4 142093454 142094146 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311556 M 24 "" nsv830090 4 142128099 142305369 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1443999 S 95 1 0 "" nsv4530 4 142150942 142183773 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3289 S 9 1 0 "" NA12878 nsv830091 4 142154208 142338151 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444000 S 95 0 1 "" nsv527493 4 142155142 142167708 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703941 S 2026 0 1 "" nsv509936 4 142405174 142411174 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622069 S 4 0 1 "" NA10860 nsv526770 4 142406152 142419551 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703122 S 2026 0 1 "" dgv1680e1 4 142423266 142725556 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv15127,esv205 M 271 0 0 "" NA19129 nsv525345 4 142486919 142490567 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701463 S 2026 0 1 "" nsv10578 4 142582395 142585060 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13611 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18860 nsv10579 4 142587774 142590697 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12217,nssv12991,nssv12410,nssv12197,nssv12066,nssv11825,nssv13632,nssv13568,nssv12075,nssv12738,nssv13641,nssv13664,nssv13873,nssv14700,nssv12694,nssv12416,nssv11470 M 31 0 17 Samples from several populations that are part of the HapMap project. "" NA10839,NA10847,NA10863,NA11830,NA12155,NA12802,NA18502,NA18504,NA18517,NA18537,NA18563,NA18564,NA18853,NA18860,NA19007,NA19221,NA19240 nsv292686 4 142588384 142590667 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311264 M 24 "" nsv291212 4 142621816 142621816 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309790 M 24 "" nsv290630 4 142621868 142621868 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309208 M 24 "" nsv830094 4 142769343 142925393 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444001 S 95 0 1 "" nsv520477 4 142797876 142801713 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697443 S 2026 0 1 "" nsv526989 4 142801713 142858658 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703362 S 2026 0 1 "" nsv830095 4 143052683 143242593 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444002,nssv1444003,nssv1444004,nssv1444005 M 95 4 0 "" nsv517947 4 143128073 143153098 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695359 S 2026 1 0 "" nsv830096 4 143224704 143381366 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444006 S 95 1 0 "" nsv830097 4 143307310 143493977 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444008 S 95 1 0 "" nsv830098 4 143407748 143591989 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444009 S 95 1 0 "" nsv830099 4 143495862 143642660 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444010 S 95 1 0 "" nsv292962 4 143564180 143564180 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311540 M 24 "" nsv830100 4 143574556 143750910 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444011 S 95 1 0 "" nsv292161 4 143647075 143648345 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310739 M 24 "" nsv461660 4 143794824 143895784 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538021 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00597 nsv292163 4 143860225 143860320 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310741 M 24 "" nsv292381 4 143860338 143860429 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310959 M 24 "" nsv830101 4 143876415 144041997 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444012 S 95 0 1 "" nsv441917 4 143973479 143977554 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv292010 4 144115047 144115477 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310588 M 24 "" nsv509937 4 144125061 144131061 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622070,nssv623963 M 4 0 2 "" NA10860,NA18994 nsv437434 4 144146169 144158952 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467315 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18860 nsv10580 4 144151763 144213964 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13671 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18860 nsv516526 4 144154092 144157966 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv691657,nssv691391,nssv668882,nssv685697,nssv659639 M 2026 0 5 "" nsv830102 4 144177873 144311216 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444013 S 95 0 1 "" nsv4531 4 144532178 144550535 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8009 S 9 0 1 "" NA12156 nsv437941 4 144643288 144653557 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv468635,nssv468634 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA19201,NA19202 dgv1681e1 4 144705898 144872906 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv803,essv3024,essv20215,essv8418,essv1249,essv15550,essv5598,essv11858,essv3897,essv15094,essv13579,essv19695,essv12622,essv19237,essv24510,essv4763,essv22511,essv23029,essv24982,essv18125,essv17472,essv8097,essv23129,essv23248,essv23975,essv15461 M 271 0 0 "" NA07029,NA10838,NA10839,NA11882,NA11993,NA12144,NA12264,NA12716,NA12762,NA12802,NA12812,NA12891,NA18500,NA18505,NA18516,NA18529,NA18620,NA18973,NA18981,NA18994,NA18995,NA19129,NA19137,NA19160,NA19206,NA19221 dgv1682e1 4 144705898 145015766 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2453,essv21427 M 271 0 0 "" NA12717,NA18999 dgv1683e1 4 144705898 145230154 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv15002,essv9897,essv12680 M 271 0 0 "" NA18500,NA18870,NA19145 dgv1684e1 4 144705898 145489197 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv702,essv6877 M 271 0 0 "" NA18605 nsv830103 4 144751003 144910650 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444015,nssv1444014 M 95 0 2 "" nsv4533 4 144928265 144963477 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3290 S 9 1 0 "" NA12878 nsv293188 4 144930907 144931233 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311766 M 24 "" dgv1685e1 4 144991727 145230154 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv16745,essv13593 M 271 0 0 "" NA18872,NA19127 dgv1686e1 4 144991727 145489197 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv10750,essv14590,essv18378,essv13199,essv5726,essv13076,essv17294,essv15865,essv16317,essv4471,essv11854,essv11818,essv11936,essv12510 M 271 0 0 "" NA12249,NA18502,NA18521,NA18523,NA18552,NA18593,NA18852,NA18856,NA19093,NA19102,NA19193,NA19207,NA19221,NA19223 nsv10581 4 145010831 145017645 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12082,nssv12226 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA18552,NA18942 dgv4n29 4 145015763 145214575 CNV Loss Locke et al 2006 16826518 BAC_aCGH nsv469812,nsv469811 M 265 0 14 "" nsv437436 4 145063110 145092765 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467317 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18872 nsv441918 4 145076302 145103603 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" esv2752026 4 145079000 145481214 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6984134,essv6984133,essv6987501,essv6984135,essv6987502 M 771 1 0 "" BEC_783 dgv189e55 4 145079265 145389446 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv2752027,esv2752028,esv2752029 M 771 3 0 "" BEC_360,BEC_558,BEC_629 nsv10582 4 145087283 145107223 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12628,nssv11741 M 31 1 1 Samples from several populations that are part of the HapMap project. "" NA12872,NA19144 nsv528303 4 145097804 145266477 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704879 S 2026 1 0 "" dgv667n27 4 145097804 145282003 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv461663,nsv461662 M 1557 2 0 "" 1780862089_A,1782681093_A nsv517006 4 145102404 145414092 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv674987,nssv656788,nssv675644,nssv667755,nssv671944,nssv660598,nssv659437,nssv703052,nssv671240,nssv683695,nssv680519,nssv666352,nssv689517,nssv681582,nssv667980,nssv662152,nssv654409,nssv665617,nssv676965,nssv664042,nssv669869,nssv686881,nssv678869,nssv675234,nssv668561,nssv656496,nssv670171,nssv689314,nssv658131,nssv680777,nssv663491,nssv686844,nssv661076,nssv658626,nssv687180,nssv656365,nssv675283,nssv669388,nssv683786,nssv689271,nssv671857,nssv673972,nssv695482,nssv672323,nssv665048,nssv688800,nssv656364,nssv678199,nssv678648,nssv680094,nssv698386,nssv671448,nssv658334,nssv692384,nssv676087,nssv687033,nssv685881,nssv660656,nssv664261,nssv659022,nssv675150,nssv671301,nssv691658,nssv679476,nssv653791,nssv665972,nssv685822,nssv696468,nssv665047,nssv651786,nssv666948,nssv653036,nssv700185,nssv685303,nssv674316,nssv679859,nssv670350,nssv660544,nssv653603,nssv684055,nssv673877,nssv673489,nssv671241,nssv681382,nssv667156,nssv657369,nssv681339,nssv693068,nssv661638,nssv679442,nssv676940,nssv652204,nssv654503 M 2026 6 87 "" nsv461664 4 145111752 145356725 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538025 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00341 nsv461665 4 145111752 145356725 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538026 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01172 nsv10584 4 145115176 145403258 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12256,nssv12594,nssv11855,nssv12989,nssv12142,nssv11801,nssv12783,nssv12470,nssv12688,nssv12476,nssv14730,nssv13707,nssv13694,nssv14273,nssv13021,nssv12286,nssv12658,nssv12212,nssv12135,nssv12724,nssv12565,nssv11569,nssv12789,nssv12535,nssv14243,nssv12227 M 31 2 21 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10847,NA12740,NA12872,NA18517,NA18537,NA18552,NA18563,NA18572,NA18853,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19144,NA19173,NA19221,NA19240 dgv1687e1 4 145146248 145278437 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv8400,essv8532,essv9297 M 271 0 0 "" NA18523,NA18852,NA19093 esv2752030 4 145146248 145317000 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6988315,essv6980780,essv6985407 M 771 1 0 "" BEC_149 dgv1688e1 4 145146248 145389446 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv12951,essv9515,essv11604 M 271 0 0 "" NA18521,NA19102,NA19207 esv34775 4 145199798 145278437 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6987401,essv6978465 M 771 0 1 "" NA19102 dgv1689e1 4 145199798 145310006 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv7992,essv9531 M 271 0 0 "" NA19221,NA19223 nsv818281 4 145200243 145282003 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418268,nssv1417862 M 112 0 2 "" NA18852,NA19093 dgv1690e1 4 145200243 145400989 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv8770,essv20478 M 271 0 0 "" NA12249,NA19092 essv16952 4 145223093 145489197 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19144 nsv469732 4 145235870 145417309 CNV Gain Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649753 M 265 2 0 Samples from several populations that are part of the HapMap project. "" dgv1691e1 4 145241048 145389446 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv11359,essv5974,essv9848,essv16572,essv5606,essv11485 M 271 0 0 "" NA18552,NA18593,NA18856,NA18858,NA19144,NA19193 dgv668n27 4 145251865 145393393 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv461667,nsv461666 M 1557 2 0 "" HGDP00031,HGDP00167 nsv437437 4 145263049 145271966 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467318 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19221 dgv1692e1 4 145266171 145448965 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv5682,essv17216 M 271 0 0 "" NA18605,NA18857 nsv437438 4 145272498 145296335 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467319 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18521 nsv441919 4 145278179 145282542 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" esv34834 4 145278437 145389446 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6986863,essv6979424 M 771 1 0 "" NA18552 nsv818282 4 145279212 145391415 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417269 S 112 1 0 "" NA18593 dgv669n27 4 145279212 145414092 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv461671,nsv461669,nsv461673,nsv461670,nsv461668 M 1557 5 0 "" HGDP00106,HGDP00672,HGDP00711,HGDP01273,HGDP01341 nsv437439 4 145287820 145302789 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467320 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18857 nsv437440 4 145307975 145326106 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467321 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18857 nsv437441 4 145326106 145343808 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467322 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18857 nsv441920 4 145359080 145370653 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv10585 4 145481152 145483086 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14303 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18972 nsv4534 4 145664255 145692821 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3291,nssv2484 M 9 0 2 "" NA12878,NA18555 nsv508319 4 145670187 145678988 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622502 S 4 0 1 "" NA18994 nsv521172 4 145843994 145854546 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv686503,nssv683809 M 2026 0 2 "" nsv818283 4 145846870 145849608 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416058,nssv1416057 M 112 0 2 "" NA12801,NA12813 nsv520518 4 145846870 145870658 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697465 S 2026 0 1 "" nsv290775 4 146021701 146021753 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309353 M 24 "" dgv174n6 4 146305745 146313280 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv289729,nsv289382 M 24 "" dgv175n6 4 146600073 146600154 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv291481,nsv290279 M 24 "" nsv290762 4 146633284 146643067 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309340 M 24 "" nsv830105 4 146854995 147028142 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444016 S 95 0 1 "" nsv830106 4 147086008 147251198 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444019,nssv1444017 M 95 2 0 "" nsv508320 4 147231405 147315701 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618755 S 4 0 1 "" NA10860 nsv519375 4 147260816 147261909 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv675339,nssv685304,nssv674723,nssv679091,nssv657619,nssv690456,nssv662208,nssv681976,nssv660843,nssv673686,nssv655735 M 2026 0 11 "" nsv4535 4 147271388 147309558 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4784,nssv7122 M 9 0 2 "" NA12156,NA19129 nsv461674 4 147404677 147501177 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538035 S 1557 1 0 "" 1798860336_A nsv461675 4 147474469 148125811 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538036 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01250 nsv4536 4 147494718 147502865 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3138 S 9 1 0 "" NA18555 nsv4537 4 147564772 147594217 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv418,nssv4785,nssv3292 M 9 3 0 "" NA12878,NA19129,NA19240 nsv509017 4 147571896 147595087 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620795,nssv623418 M 4 2 0 "" NA15510,NA18994 nsv4538 4 147766373 147798753 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7124 S 9 1 0 "" NA12156 nsv830107 4 147810039 147993325 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444020 S 95 1 0 "" nsv527738 4 147886814 147895669 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704222 S 2026 0 1 "" dgv176n6 4 148278196 148278521 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv292454,nsv290264 M 24 "" nsv461676 4 148284832 148320037 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538037 S 1557 0 1 "" 1780854489_A nsv290501 4 148374145 148374376 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309079 M 24 "" nsv292371 4 148374441 148374441 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310949 M 24 "" nsv830108 4 148472257 148668709 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444021 S 95 0 1 "" nsv4539 4 148549549 148575429 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9401 S 9 1 0 "" NA18517 nsv4540 4 148588198 148633383 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8010 S 9 0 1 "" NA12156 nsv830109 4 148652666 148826210 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444022 S 95 0 1 "" nsv830110 4 148789730 148952724 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444023 S 95 0 1 "" nsv293162 4 148986315 148989217 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311740 M 24 "" nsv292987 4 149199047 149199047 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311565 M 24 "" nsv4541 4 149404551 149422244 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9647 S 9 1 0 "" NA18507 nsv293429 4 149409598 149413399 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv312007 M 24 "" nsv527076 4 149554596 149559224 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703455 S 2026 0 1 "" nsv291316 4 149771362 149771417 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309894 M 24 "" nsv519984 4 149936685 149942321 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv659878,nssv685253 M 2026 0 2 "" nsv291106 4 150020297 150028255 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309684 M 24 "" nsv4542 4 150094476 150110979 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9648 S 9 1 0 "" NA18507 nsv461677 4 150151889 150261587 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538038 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00959 nsv4544 4 150337405 150383928 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10424 S 9 0 1 "" NA18956 nsv4545 4 150366854 150394795 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3293 S 9 1 0 "" NA12878 nsv291651 4 150518662 150519003 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310229 M 24 "" nsv290008 4 150623459 150630079 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308586 M 24 "" nsv518267 4 151134617 151153159 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695698 S 2026 0 1 "" nsv516344 4 151219631 151232435 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv667714,nssv688012 M 2026 2 0 "" nsv830111 4 151224962 151393161 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444024 S 95 1 0 "" nsv293314 4 151308646 151308967 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311892 M 24 "" nsv292617 4 151473900 151473958 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311195 M 24 "" nsv509018 4 151516428 151544009 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620796,nssv619385 M 4 2 0 "" NA10860,NA15510 nsv261 4 151517802 151547402 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv261 S 1 1 0 "" NA15510 nsv4546 4 151517802 151553738 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv419,nssv3294,nssv11092,nssv4787 M 9 4 0 "" NA12878,NA15510,NA19129,NA19240 nsv507204 4 151526992 151532992 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622909 S 4 1 0 "" NA18994 nsv517536 4 151556685 151557102 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv652291,nssv674005 M 2026 0 2 "" nsv830112 4 151601406 151789376 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444025 S 95 1 0 "" nsv527113 4 151671920 151674039 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703495 S 2026 1 0 "" nsv4547 4 151843885 151889084 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8011 S 9 0 1 "" NA12156 nsv830113 4 151895789 152049547 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444026 S 95 0 1 "" nsv290414 4 151918497 151918548 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308992 M 24 "" nsv526976 4 152033424 152412678 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703348 S 2026 1 0 "" nsv437442 4 152202535 152241918 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467323 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19103 nsv527494 4 152223127 152238370 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703942 S 2026 0 1 "" nsv818284 4 152223127 152244885 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418449,nssv1418447 M 112 0 2 "" NA19193,NA19194 nsv461678 4 152223127 152338241 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538039 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00241 nsv4548 4 152224619 152265635 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4788,nssv420 M 9 0 2 "" NA19129,NA19240 nsv517186 4 152229078 152240895 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv689316,nssv672324,nssv664339,nssv687247,nssv658192,nssv668834,nssv687873,nssv690713,nssv660792,nssv665673,nssv668883,nssv688935,nssv683056,nssv654732,nssv676270,nssv683958,nssv675351,nssv653959,nssv689292,nssv686557,nssv693817,nssv693962,nssv655311,nssv688774,nssv677135,nssv678820,nssv671477,nssv660277,nssv662543,nssv654084,nssv680919,nssv668053,nssv658827,nssv663582,nssv662056,nssv656595,nssv660341,nssv665458,nssv669870,nssv652205,nssv677427,nssv686168,nssv656408,nssv664990 M 2026 0 44 "" nsv437443 4 152229078 152241918 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467324 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18515 nsv10586 4 152231776 152244676 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13051,nssv13662,nssv13701,nssv12500 M 31 0 4 Samples from several populations that are part of the HapMap project. "" NA18502,NA18853,NA18860,NA19240 nsv442923 4 152233956 152241903 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv437942 4 152238370 152241323 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv468636,nssv468639,nssv468638,nssv468637 M 269 0 4 Samples from several populations that are part of the HapMap project. "" NA19143,NA19210,NA19211,NA19239 nsv4549 4 152437034 152470582 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4789 S 9 1 0 "" NA19129 nsv4550 4 152600304 152631983 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2485 S 9 1 0 "" NA18555 nsv830114 4 152758893 152906211 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444027 S 95 0 1 "" nsv508321 4 152767599 152832061 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622504 S 4 0 1 "" NA18994 nsv4551 4 152940222 152984972 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8012 S 9 0 1 "" NA12156 nsv508322 4 152974684 153036556 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619946 S 4 0 1 "" NA15510 nsv4552 4 153038816 153060062 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8013 S 9 0 1 "" NA12156 dgv1693e1 4 153133876 153154372 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv19076,essv20699 M 271 0 0 "" NA11830,NA12802 esv1325 4 153133876 153167343 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 "" nsv471714 4 153136197 153136604 CNV Loss Hinds et al 2006 16327809 Oligo_aCGH,PCR Custom Perlegen arrays nssv645995 M 0.218 95 "" dgv1694e1 4 153140244 153154372 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv21955,essv22022 M 271 0 0 "" NA07000,NA12815 dgv1695e1 4 153143557 153152305 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2138,essv1555,essv3622,essv1311,essv2949 M 271 0 0 "" NA18966,NA18972,NA18973,NA18978,NA19012 dgv1696e1 4 153143557 153155371 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv3840,essv14843,essv19480,essv25044,essv19160,essv3669,essv25082 M 271 0 0 "" NA12750,NA12801,NA12812,NA12892,NA18943,NA18953,NA19119 dgv1697e1 4 153143557 153167343 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv9838,essv13988 M 271 0 0 "" NA19098,NA19144 nsv10587 4 153146836 153152541 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14333,nssv12718,nssv12247,nssv12165,nssv11500 M 31 0 5 Samples from several populations that are part of the HapMap project. "" NA11830,NA12802,NA18537,NA18972,NA19144 essv13224 4 153146998 153156979 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19120 dgv190e55 4 153149000 153152305 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv2752031,esv2752032,esv2752033 M 771 0 3 "" BEC_395,BEC_671,SPC_19 nsv441921 4 153149134 153152304 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv1698e1 4 153149138 153154372 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv14670,essv4926,essv9264 M 271 0 0 "" NA18537,NA19137,NA19145 nsv515882 4 153149259 153150396 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv666301,nssv676490,nssv654964,nssv685443,nssv691755,nssv655478,nssv656168,nssv673622,nssv661025,nssv678331,nssv692474,nssv688110,nssv655914,nssv661331,nssv665133 M 2026 0 15 "" nsv10588 4 153165270 153167459 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12819 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA12740 nsv509938 4 153328199 153334199 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618188 S 4 0 1 "" CHM nsv441922 4 153347891 153350344 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv670n27 4 153348660 153350346 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv461680,nsv461685,nsv461684,nsv461681,nsv461682 M 1557 0 5 "" HGDP00072,HGDP00218,HGDP00313,HGDP00958,HGDP01193 nsv517311 4 153348660 153350346 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv693765,nssv651680,nssv687527,nssv682710,nssv656101,nssv669457,nssv661371,nssv693913,nssv658261,nssv671785,nssv665102,nssv666500,nssv662606,nssv685669,nssv660757,nssv683090,nssv670860,nssv692557,nssv665459,nssv686504,nssv676017,nssv678101,nssv691990,nssv685492,nssv686427 M 2026 0 25 "" nsv818285 4 153348660 153350346 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417115 S 112 0 1 "" NA18537 nsv516218 4 153587473 153667143 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv669389,nssv652641,nssv695955,nssv663248,nssv673006,nssv660720 M 2026 0 6 "" nsv4553 4 153602210 153628737 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2486 S 9 1 0 "" NA18555 nsv523798 4 153628569 153762817 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699626 S 2026 0 1 "" nsv830116 4 153694200 153892039 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444028 S 95 1 0 "" dgv671n27 4 153926699 153955893 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv461688,nsv461689 M 1557 2 0 "" HGDP00135,HGDP00364 nsv521115 4 153943589 153947668 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697795 S 2026 0 1 "" nsv461690 4 153955893 153999387 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538048 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00218 nsv529018 4 153979134 153998218 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705729 S 2026 1 0 "" nsv522511 4 154027009 154182720 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705879 S 2026 0 1 "" nsv516652 4 154042919 154089964 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv671814,nssv684682,nssv684137,nssv667850,nssv661722,nssv653286,nssv692734,nssv668231,nssv677622,nssv656982,nssv657481,nssv672711,nssv668183,nssv689185,nssv658998,nssv654814,nssv665936,nssv687592,nssv655612,nssv666463,nssv693017,nssv691631,nssv687223,nssv656169 M 2026 0 24 "" nsv520249 4 154078297 154182720 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697307 S 2026 0 1 "" nsv830117 4 154165841 154401418 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444030 S 95 1 0 "" nsv461691 4 154246245 154272608 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538049 S 1557 0 1 "" 1780854205_A nsv509019 4 154249958 154329340 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620797 S 4 1 0 "" NA15510 nsv4555 4 154269175 154278272 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8014 S 9 1 0 "" NA12156 nsv521991 4 154269422 154272608 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694758 S 2026 1 0 "" nsv517491 4 154299227 154303615 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv680720,nssv690270,nssv654709,nssv652181,nssv657144,nssv667950 M 2026 0 6 "" nsv290708 4 154408730 154408871 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309286 M 24 "" nsv4556 4 154439836 154475822 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4790,nssv3139 M 9 2 0 "" NA18555,NA19129 nsv509939 4 154602909 154608909 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622071,nssv618189 M 4 0 2 "" CHM,NA10860 nsv830118 4 154646964 154822311 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444031 S 95 0 1 "" nsv4557 4 154916626 154961665 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2487 S 9 0 1 "" NA18555 nsv525672 4 154947954 154952483 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701829 S 2026 0 1 "" nsv10589 4 155038408 155040193 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12195,nssv12242 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA18537 nsv4558 4 155208131 155241394 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8015 S 9 1 0 "" NA12156 nsv528701 4 155330673 155381548 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705348 S 2026 1 0 "" nsv509020 4 155422805 155437354 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619386,nssv620798,nssv623419,nssv618028 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv4559 4 155431001 155461877 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2488,nssv421,nssv7125,nssv3295,nssv4791 M 9 5 0 "" NA12156,NA12878,NA18555,NA19129,NA19240 nsv291135 4 155468239 155468239 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309713 M 24 "" nsv289607 4 155468298 155468298 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308185 M 24 "" nsv461692 4 155626993 155665031 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538050 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00372 nsv510924 4 155627027 155660121 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621575 S 4 0 0 "" NA15510 nsv507205 4 155630733 155636733 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621766,nssv617648,nssv622910 M 4 3 0 "" CHM,NA10860,NA18994 nsv507206 4 155648052 155654052 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617649,nssv622911,nssv621767 M 4 3 0 "" CHM,NA10860,NA18994 nsv830119 4 155767211 155803753 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444032 S 95 1 0 "" nsv292497 4 155775131 155777900 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311075 M 24 "" nsv289630 4 155925082 155925082 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308208 M 24 "" nsv4560 4 155951730 155996238 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8016 S 9 0 1 "" NA12156 nsv290819 4 155965952 155973977 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309397 M 24 "" nsv437444 4 155990211 155997620 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467325 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18500 nsv461693 4 156129236 156150569 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538051 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00553 nsv471726 4 156160589 156160692 CNV Loss Hinds et al 2006 16327809 Oligo_aCGH,PCR Custom Perlegen arrays nssv646007 M 1.491 95 "" nsv442924 4 156160610 156160683 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv291754 4 156160617 156160695 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310332 M 24 "" nsv471737 4 156165500 156165938 CNV Loss Hinds et al 2006 16327809 Oligo_aCGH,PCR Custom Perlegen arrays nssv646018 M 0.064 95 "" nsv830120 4 156196705 156368230 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444033 S 95 1 0 "" nsv291939 4 156234213 156234213 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310517 M 24 "" nsv526876 4 156413170 156420360 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703234 S 2026 1 0 "" nsv518026 4 156444790 156449246 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695436 S 2026 1 0 "" nsv517632 4 156517915 156574331 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695967,nssv692193,nssv652603,nssv662577,nssv673227,nssv656252,nssv675674,nssv683524,nssv671108,nssv677965,nssv658443,nssv656734,nssv688748 M 2026 0 13 "" nsv4561 4 156524954 156558123 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2489 S 9 1 0 "" NA18555 nsv519318 4 156595975 156604542 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696788 S 2026 0 1 "" nsv291636 4 156656794 156656794 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310214 M 24 "" nsv4562 4 156748075 156792564 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4674 S 9 0 1 "" NA19129 nsv289443 4 156792869 156795746 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308021 M 24 "" nsv519421 4 156795688 156830371 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694328 S 2026 0 1 "" nsv292440 4 156851158 156851158 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311018 M 24 "" nsv437445 4 156942002 156972559 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467326 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19161 nsv442925 4 156951873 156955600 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv519870 4 156955686 156968908 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697094 S 2026 0 1 "" nsv509940 4 156964377 156970377 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618190 S 4 0 1 "" CHM dgv1699e1 4 156964511 156968445 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1236,essv3628 M 271 0 0 "" NA18966 nsv4563 4 156985232 157017994 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7126 S 9 1 0 "" NA12156 nsv517652 4 157032974 157035197 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv663492,nssv656289,nssv692715,nssv668458,nssv656497,nssv665500,nssv677363,nssv673209,nssv652670,nssv693503,nssv685698,nssv666793,nssv685849,nssv682300,nssv666949,nssv691809,nssv684762,nssv691919,nssv652779,nssv654504,nssv680520,nssv654410,nssv691852,nssv673193,nssv654328,nssv664321,nssv662772,nssv678079,nssv658888,nssv676997 M 2026 0 30 "" nsv818286 4 157070962 157093044 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417427 S 112 1 0 "" NA12234 nsv521382 4 157077902 157078345 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697991 S 2026 0 1 "" nsv830121 4 157128760 157281071 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444034 S 95 1 0 "" nsv4564 4 157223296 157249398 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv422,nssv11093,nssv9649,nssv2490,nssv7127 M 9 5 0 "" NA12156,NA15510,NA18507,NA18555,NA19240 nsv262 4 157225066 157249091 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv262 S 1 1 0 "" NA15510 nsv437447 4 157231928 157242774 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467328 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18503 nsv510893 4 157233966 157241537 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624293,nssv622367 M 4 0 0 "" NA10860,NA18994 nsv10590 4 157244897 157248666 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13737 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19132 nsv4566 4 157253538 157297875 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2491 S 9 0 1 "" NA18555 nsv293647 4 157292702 157292794 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv312225 M 24 "" nsv10591 4 157316408 157331841 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11831,nssv12272 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA07029,NA12872 nsv515636 4 157321297 157324990 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv665337,nssv664186,nssv693998,nssv684627,nssv655613,nssv672032,nssv665954,nssv655188 M 2026 0 8 "" nsv437943 4 157321297 157325500 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv468640 S 269 0 1 Samples from several populations that are part of the HapMap project. "" NA07000 nsv441923 4 157326288 157330814 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv290852 4 157359638 157359948 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309430 M 24 "" nsv289520 4 157371719 157371719 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308098 M 24 "" nsv292241 4 157371723 157371723 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310819 M 24 "" nsv4567 4 157480164 157513424 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4792 S 9 1 0 "" NA19129 nsv517773 4 157662203 157674825 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv691681,nssv682384,nssv660342,nssv663583,nssv665338,nssv673831,nssv664615,nssv663326,nssv673093,nssv655269,nssv665296,nssv668884,nssv676784,nssv681702,nssv674724,nssv654229,nssv660232,nssv657723,nssv668413,nssv667663,nssv661498,nssv681651,nssv672451,nssv674006,nssv687370,nssv656808,nssv653792,nssv669346,nssv652078,nssv684837,nssv690554,nssv679957,nssv673928,nssv653153,nssv666302,nssv667642,nssv669976,nssv675528,nssv663428,nssv654830,nssv651720,nssv670761,nssv664690,nssv689046,nssv657764 M 2026 0 45 "" nsv471722 4 157662825 157664652 CNV Loss Hinds et al 2006 16327809 Oligo_aCGH,PCR Custom Perlegen arrays nssv646003 M 0.043 95 "" nsv293689 4 157716950 157717329 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv312267 M 24 "" nsv525952 4 157842246 157847511 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702159 S 2026 0 1 "" nsv516423 4 157924985 157931640 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv662970,nssv700143,nssv694102,nssv668279,nssv679880,nssv681131,nssv656863 M 2026 1 6 "" nsv830122 4 157974503 158171450 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444035 S 95 1 0 "" nsv4568 4 157988716 158023999 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv423 S 9 1 0 "" NA19240 nsv291821 4 158335136 158335229 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310399 M 24 "" nsv830123 4 158492934 158640860 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444036 S 95 1 0 "" dgv1700e1 4 158509492 158739893 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv9655,esv725 M 271 0 0 "" NA18913 nsv293530 4 158527350 158527350 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv312108 M 24 "" essv14215 4 158541701 158702897 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18913 nsv10592 4 158679988 158687870 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13731,nssv12316 M 31 1 1 Samples from several populations that are part of the HapMap project. "" NA18552,NA18860 nsv4569 4 158769485 158804445 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv424 S 9 1 0 "" NA19240 nsv461695 4 158897980 158921885 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538052 S 1557 0 1 "" NINDS_103 nsv437448 4 158907924 158955096 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467329 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19142 nsv520246 4 158992374 158998287 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv680920,nssv662084,nssv684575 M 2026 0 3 "" nsv517103 4 159085344 159088624 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv665365,nssv668214,nssv664762,nssv673907,nssv653037,nssv661943,nssv652780,nssv688890,nssv679599,nssv666656,nssv666794,nssv654293,nssv683145,nssv668054,nssv681102,nssv685736,nssv661914,nssv666353,nssv653793,nssv691031,nssv661026,nssv680354,nssv681840,nssv675608,nssv653455,nssv671478,nssv693914,nssv689272,nssv679054,nssv673973,nssv692716,nssv663133,nssv692496,nssv658074 M 2026 0 34 "" nsv437449 4 159085344 159090181 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467330 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18521 nsv437450 4 159086157 159091948 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467331 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19194 nsv520186 4 159087164 159099064 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697269 S 2026 0 1 "" nsv442926 4 159087167 159088983 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv509022 4 159258401 159292602 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623420 S 4 1 0 "" NA18994 nsv292961 4 159384983 159386096 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311539 M 24 "" nsv830124 4 159797422 159921944 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444037 S 95 1 0 "" nsv830125 4 159969920 160127117 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444039,nssv1444038 M 95 2 0 "" nsv830127 4 160030420 160227064 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444041 S 95 0 1 "" nsv4570 4 160045869 160064095 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8017 S 9 0 1 "" NA12156 nsv830128 4 160131216 160328348 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444045,nssv1444044,nssv1444043,nssv1444042,nssv1444046,nssv1444048,nssv1444047,nssv1444049 M 95 8 0 "" nsv4571 4 160223521 160268224 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8018 S 9 0 1 "" NA12156 nsv4572 4 160387614 160421218 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8019 S 9 1 0 "" NA12156 nsv830129 4 160419299 160628365 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444050 S 95 1 0 "" nsv523255 4 160731860 160746109 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698984 S 2026 1 0 "" nsv4573 4 160816684 160849673 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7128 S 9 1 0 "" NA12156 nsv4574 4 161009864 161043629 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7129 S 9 0 1 "" NA12156 nsv461696 4 161065666 161192436 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538053 S 1557 1 0 "" NINDS_45 nsv830130 4 161105848 161299285 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444052 S 95 1 0 "" nsv4575 4 161202652 161247315 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8020 S 9 0 1 "" NA12156 nsv461697 4 161220872 161628076 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538054 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00972 nsv4577 4 161291810 161302697 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10425 S 9 1 0 "" NA18956 nsv522612 4 161292292 161294595 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv706006 S 2026 0 1 "" nsv830131 4 161297265 161485904 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444053 S 95 1 0 "" nsv518898 4 161332157 161390600 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696357 S 2026 1 0 "" nsv291657 4 161333010 161333299 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310235 M 24 "" nsv4578 4 161361524 161381120 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10426 S 9 0 1 "" NA18956 nsv10593 4 161370737 161377570 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12624,nssv12172,nssv12798 M 31 0 3 Samples from several populations that are part of the HapMap project. "" NA18564,NA18942,NA18975 dgv1701e1 4 161385730 161462448 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv18801,esv1035 M 271 0 0 "" NA12248 nsv436970 4 161390600 161439977 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv466851 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA12878 nsv4579 4 161393105 161448507 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3296 S 9 0 1 "" NA12878 dgv672n27 4 161396949 161428987 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv461699,nsv461698 M 1557 0 2 "" HGDP01152,NINDS_49 nsv517034 4 161396949 161454113 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv677174,nssv674349,nssv658581,nssv689712,nssv663973,nssv681929,nssv674819,nssv685606,nssv658563,nssv684214,nssv681899,nssv673094,nssv653649,nssv664955,nssv651971,nssv657242,nssv704376,nssv684511,nssv689102,nssv663446,nssv658542,nssv689466,nssv676473,nssv685271,nssv679383,nssv666766,nssv689426,nssv674703,nssv652804,nssv692839,nssv697494,nssv670823,nssv660758,nssv689490,nssv671831,nssv693818,nssv664878,nssv666303,nssv669564,nssv655509,nssv689651,nssv657222,nssv685231,nssv682029,nssv661572,nssv673270,nssv688229,nssv678462,nssv674030,nssv693986,nssv669254,nssv673284,nssv673454,nssv671575,nssv665907,nssv677222,nssv663630,nssv658026 M 2026 2 56 "" esv33547 4 161405002 161429812 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98512 S 51 0 1 "" 22352 nsv442928 4 161410375 161424724 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv461700 4 161415048 161418680 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538057 S 1557 0 1 "" 1780854496_A dgv673n27 4 161415048 161428987 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv461706,nsv461715,nsv461723,nsv461704,nsv461734,nsv461701,nsv461722,nsv461733,nsv461712,nsv461732,nsv461735,nsv461726,nsv461711,nsv461714,nsv461724,nsv461709,nsv461702,nsv461703,nsv461730,nsv461707,nsv461713,nsv461708,nsv461721,nsv461710,nsv461731 M 1557 0 25 "" 1780854063_A,1780854096_A,1780854401_A,1780854479_A,1780854487_A,1780862043_A,1780862085_A,1780862202_A,1780862390_A,1780862432_A,1780862546_A,1782681112_A,1782681237_A,1782681286_A,1798860186_A,1798860587_A,HGDP00519,HGDP00807,NINDS_151,NINDS_208,NINDS_26,NINDS_272,NINDS_39,NINDS_71,NINDS_92 nsv818287 4 161415048 161428987 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416153,nssv1416750,nssv1416154,nssv1416739,nssv1416059,nssv1416060 M 112 0 6 "" NA10857,NA12043,NA12801,NA12812,NA12878,NA12891 nsv818288 4 161415048 161443336 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415637,nssv1415638 M 112 0 2 "" NA10835,NA12248 dgv674n27 4 161415048 161454113 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv461718,nsv461720,nsv461717,nsv461719 M 1557 0 4 "" 1780854095_A,1780854318_A,1780862399_A,HGDP01403 nsv10595 4 161416557 161418835 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12813 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA07048 nsv433223 4 161417367 161429724 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463104 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA12878 nsv461725 4 161417367 161440783 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538082 S 1557 0 1 "" 1798860084_A nsv437944 4 161417479 161429548 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv468642,nssv468643 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA12878,NA12891 dgv675n27 4 161419749 161428987 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv461747,nsv461742,nsv461746,nsv461744,nsv461741,nsv461739,nsv461738,nsv461745,nsv461743,nsv461736,nsv461737 M 1557 0 11 "" 1780854278_A,1780854444_A,1780862346_A,1780862437_A,1780862521_A,1782681294_A,1782681495_A,1788485588_A,HGDP00513,HGDP00860,NINDS_123 dgv1702e1 4 161420498 161462448 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv25158,essv17857 M 271 0 0 "" NA10857,NA11839 dgv676n27 4 161423722 161428987 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv461748,nsv461749 M 1557 0 2 "" 1780854210_A,1780862443_A nsv289499 4 161468115 161468115 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308077 M 24 "" nsv292841 4 161669897 161669965 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311419 M 24 "" nsv521144 4 161704970 161864502 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv689074,nssv682911 M 2026 0 2 "" dgv1703e1 4 161727569 161909769 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv198,essv3546 M 271 0 0 "" NA18965 nsv10596 4 161809585 161818159 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13724 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18517 nsv289457 4 161875337 161880036 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308035 M 24 "" nsv509941 4 161897069 161903069 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623964 S 4 0 1 "" NA18994 nsv508323 4 161919555 161935918 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622505 S 4 0 1 "" NA18994 nsv289704 4 162041502 162043217 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308282 M 24 "" nsv4580 4 162070665 162104985 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3297 S 9 1 0 "" NA12878 nsv519753 4 162117147 162132319 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697032 S 2026 0 1 "" nsv515837 4 162122234 162142636 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv693669,nssv679027,nssv669854,nssv668081,nssv666975,nssv681583,nssv685984,nssv661723,nssv660568,nssv701371,nssv697148,nssv677069,nssv684872,nssv673758,nssv664956,nssv654545,nssv671576 M 2026 1 16 "" esv2752034 4 162129000 162359000 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6988766,essv6987518 M 771 1 0 "" BEC_799 dgv1704e1 4 162141027 162312760 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv5844,essv2703,esv924 M 271 0 0 "" NA18524,NA18944 dgv191e55 4 162153041 162295027 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv34806,esv34413 M 771 2 0 "" NA18633,NA18947 nsv10597 4 162185095 162186492 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12849,nssv13081 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA12740,NA19240 nsv818290 4 162188343 162285132 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417722 S 112 1 0 "" NA18999 dgv677n27 4 162188343 162292947 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv461753,nsv461750,nsv461754,nsv461757,nsv461756,nsv461752,nsv461755 M 1557 7 0 "" HGDP00762,HGDP00774,HGDP00785,HGDP00955,HGDP01288,HGDP01308,HGDP01310 nsv516229 4 162195320 162290607 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv670101,nssv670351,nssv654161,nssv664879,nssv682577,nssv657875,nssv689133,nssv687224,nssv654329,nssv674373,nssv691267,nssv693440,nssv681225,nssv691796,nssv661658,nssv663493,nssv686143,nssv662933,nssv693214,nssv677702,nssv693516,nssv658543,nssv659879,nssv655510,nssv652652,nssv673490,nssv672452,nssv656618,nssv654782,nssv694558,nssv698393,nssv679144,nssv672142,nssv659598,nssv686794,nssv665771,nssv692100,nssv681875,nssv693474,nssv687824 M 2026 7 33 "" dgv1705e1 4 162197064 162304230 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv199,essv596 M 271 0 0 "" NA18947,NA18994 nsv10598 4 162216641 162289499 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12879,nssv12277,nssv12654,nssv13598,nssv13903,nssv12595,nssv12126,nssv13692,nssv13784,nssv12530,nssv12257,nssv11530,nssv11885,nssv12843,nssv13141,nssv12202,nssv14820,nssv12784,nssv14363 M 31 16 3 Samples from several populations that are part of the HapMap project. "" NA07048,NA10839,NA10847,NA10863,NA11830,NA12155,NA12740,NA12802,NA18502,NA18504,NA18517,NA18563,NA18853,NA18942,NA18972,NA18975,NA18980,NA19221,NA19240 dgv678n27 4 162219245 162290607 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv461759,nsv461775,nsv461777,nsv461778,nsv461772,nsv461768,nsv461766,nsv461776,nsv461770,nsv461764,nsv461760,nsv461763,nsv461765,nsv461771,nsv461761,nsv461774,nsv461767,nsv461769 M 1557 18 0 "" HGDP00747,HGDP00750,HGDP00758,HGDP00759,HGDP00773,HGDP00775,HGDP00790,HGDP00815,HGDP00951,HGDP01198,HGDP01215,HGDP01221,HGDP01246,HGDP01318,HGDP01332,HGDP01341,HGDP01355,HGDP01356 nsv4581 4 162220339 162251058 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3298 S 9 0 1 "" NA12878 dgv51n64 4 162221498 162290607 CNV Gain Wang_et_al_2007 17921354 SNP_array nsv818291,nsv818292 M 112 7 0 "" NA18529,NA18576,NA18944,NA18965,NA18978,NA18992,NA18994 nsv442929 4 162221500 162289255 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv192e55 4 162222000 162304230 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv34656,esv35170 M 771 2 0 "" NA18563,NA18999 dgv1706e1 4 162222345 162312760 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2128,essv3642,essv1676,essv3492,essv4105,essv5081,essv5897,essv7676,essv6201,essv99,essv7466,essv704,essv1987,essv2739 M 271 0 0 "" NA18529,NA18563,NA18570,NA18576,NA18620,NA18633,NA18940,NA18942,NA18965,NA18978,NA18991,NA18992,NA18999,NA19005 dgv103n17 4 162228079 162247588 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv436972,nsv437451,nsv436971 M 60 0 3 "" NA10855,NA12865,NA19142 dgv104n17 4 162232750 162242651 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437452,nsv437453 M 60 0 2 "" NA18860,NA19132 nsv437945 4 162236671 162242220 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv468653,nssv468645,nssv468656,nssv468648,nssv468644,nssv468657,nssv468654,nssv468659,nssv468658,nssv468651,nssv468655,nssv468660,nssv468650,nssv468647,nssv468646,nssv468649 M 269 0 16 Samples from several populations that are part of the HapMap project. "" NA07019,NA12248,NA12802,NA18562,NA18577,NA18594,NA18943,NA18960,NA18971,NA18972,NA18975,NA18997,NA19131,NA19132,NA19141,NA19142 nsv508324 4 162237780 162249085 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619947 S 4 0 1 "" NA15510 esv33125 4 162238059 162242475 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98870,essv100883,essv98331,essv94336,essv97010,essv95607,essv99021,essv93623,essv97281,essv99796,essv93349,essv98485 M 51 12 0 "" 21606,21656,21772,21808,21817,21841,21938,21972,22075,22086,22170,22352 nsv433469 4 162238064 162241641 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463350 S 9 0 1 "" NA15510 nsv818293 4 162240732 162247588 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415661 S 112 0 1 "" NA19142 nsv461779 4 162261710 162298035 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538135 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01237 esv2752035 4 162279000 162370000 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6988705,essv6986493 M 771 1 0 "" BEC_618 nsv515755 4 162298035 162371883 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv669693,nssv686722,nssv655974,nssv660759,nssv688362,nssv680619,nssv670807,nssv674643,nssv662691,nssv691234,nssv664691,nssv665783,nssv688582,nssv673929,nssv683030,nssv667860,nssv689467,nssv685619,nssv659925,nssv671109,nssv683132,nssv657190,nssv682113 M 2026 23 0 "" dgv679n27 4 162302907 162361229 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv461798,nsv461792,nsv461800,nsv461793,nsv461785,nsv461787,nsv461794,nsv461801,nsv461791,nsv461796,nsv461786,nsv461804,nsv461797,nsv461790,nsv461788,nsv461799,nsv461789 M 1557 17 0 "" 1780854197_A,1780854439_A,1780854445_A,1780862274_A,1780862532_A,1782681216_A,1782681237_A,1798860049_A,HGDP00511,HGDP00527,HGDP00806,HGDP00882,HGDP00893,HGDP00901,HGDP00947,NINDS_117,NINDS_155 dgv193e55 4 162303973 162366210 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv2752036,esv2752038,esv2752037 M 771 3 0 "" BEC_30,BEC_387,BEC_611 nsv830132 4 162305355 162449440 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444054 S 95 1 0 "" nsv10599 4 162312706 162321176 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12307,nssv12232,nssv12287,nssv13171 M 31 4 0 Samples from several populations that are part of the HapMap project. "" NA11830,NA18563,NA18942,NA19240 nsv461805 4 162328368 162361229 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538155 S 1557 1 0 "" NINDS_103 nsv293196 4 162331061 162331061 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311774 M 24 "" nsv818294 4 162342947 162344947 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417863 S 112 1 0 "" NA18852 dgv680n27 4 162377768 162448360 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv461807,nsv461808 M 1557 0 2 "" 1780854179_A,NINDS_180 nsv516908 4 162377768 162448360 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv688141,nssv705182,nssv701188,nssv654867,nssv705989,nssv680216,nssv661351 M 2026 0 7 "" nsv509942 4 162383160 162389160 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621250 S 4 0 1 "" NA15510 nsv292542 4 162388067 162388067 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311120 M 24 "" nsv461809 4 162402798 162417357 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538159 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00326 nsv461810 4 162413937 162417357 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538160 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00208 nsv4582 4 162443800 162476773 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv426 S 9 1 0 "" NA19240 nsv517688 4 162511658 162516527 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv652843,nssv685949,nssv669018,nssv661389 M 2026 0 4 "" nsv507207 4 162538638 162544638 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622913,nssv621768,nssv617650,nssv620268 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv10600 4 162551137 162562985 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12909 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA12740 dgv1707e1 4 162551407 162593480 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv24159,esv1031,essv23700 M 271 0 0 "" NA12740,NA12751 nsv441924 4 162551949 162562716 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv10601 4 162577752 162590221 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12302,nssv13797,nssv12625,nssv13201,nssv12748 M 31 0 5 Samples from several populations that are part of the HapMap project. "" NA07029,NA18980,NA19132,NA19144,NA19240 nsv517717 4 162581086 162584839 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv652968,nssv687225,nssv663195,nssv691193 M 2026 4 0 "" nsv4583 4 162585001 162629723 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8021 S 9 0 1 "" NA12156 nsv830133 4 162603793 162737624 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444055 S 95 1 0 "" nsv519185 4 162633334 162634374 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696669 S 2026 0 1 "" nsv830134 4 162677615 162847128 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444056 S 95 1 0 "" nsv515994 4 162728170 162731398 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv658889,nssv686558,nssv665633 M 2026 0 3 "" dgv1708e1 4 162735374 162917315 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv138,essv11928 M 271 0 0 "" NA18502 nsv830135 4 162737923 162886834 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444057 S 95 0 1 "" nsv292248 4 162740054 162740217 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310826 M 24 "" nsv461811 4 162746262 162795149 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538161 S 1557 0 1 "" 1780862470_A nsv292893 4 162795337 162795420 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311471 M 24 "" nsv10602 4 162804872 162809805 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13722,nssv12814,nssv12337,nssv12560,nssv13827,nssv12808,nssv12655,nssv14393,nssv12332,nssv12506,nssv13791,nssv12873,nssv12317,nssv14850,nssv11560,nssv13019,nssv11915,nssv13933,nssv13628,nssv11599,nssv12828,nssv12262,nssv12346 M 31 19 4 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10847,NA11830,NA12155,NA12802,NA18502,NA18504,NA18552,NA18563,NA18564,NA18572,NA18853,NA18860,NA18942,NA18972,NA18980,NA19007,NA19132,NA19144,NA19173,NA19221 nsv461812 4 162908476 162970170 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538162 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01279 nsv290897 4 162951516 162951516 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309475 M 24 "" dgv681n27 4 162997544 163035916 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv461814,nsv461813 M 1557 0 2 "" 1780862176_A,NINDS_99 nsv461815 4 163008593 163061744 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538165 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00773 nsv291231 4 163058517 163058570 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309809 M 24 "" nsv289833 4 163062435 163062435 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308411 M 24 "" dgv1709e1 4 163092222 163265570 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv490,essv16316 M 271 0 0 "" NA19193 dgv177n6 4 163133739 163133817 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv290334,nsv292173,nsv292390 M 24 "" nsv461819 4 163151507 163238692 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538166 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00716 nsv525141 4 163365843 163366806 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701211 S 2026 0 1 "" nsv519755 4 163537543 163538055 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697033 S 2026 0 1 "" nsv525896 4 163542256 163543940 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702099 S 2026 0 1 "" nsv289581 4 163590020 163590328 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308159 M 24 "" nsv461820 4 163623066 163633246 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538167 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00304 nsv517602 4 163632051 163633246 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv652482,nssv686505 M 2026 0 2 "" nsv437454 4 163678314 163702121 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467335 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19145 nsv508325 4 163737482 163760436 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617499 S 4 0 1 "" CHM nsv289661 4 163751611 163754027 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308239 M 24 "" nsv516300 4 163924561 163924919 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv681670,nssv688156,nssv684168,nssv657258,nssv669757,nssv667579,nssv667408,nssv677428 M 2026 0 8 "" nsv289923 4 163936094 163936094 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308501 M 24 "" nsv289719 4 164042867 164042867 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308297 M 24 "" nsv291467 4 164042874 164042874 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310045 M 24 "" nsv437455 4 164309015 164332404 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467336 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18854 nsv10603 4 164311127 164315833 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12590 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18853 nsv830136 4 164311751 164344833 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444058 S 95 0 1 "" nsv441925 4 164312066 164315034 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv516475 4 164312697 164315261 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv662703,nssv692035,nssv673228,nssv679732,nssv692948,nssv683242,nssv668595,nssv680052,nssv681744,nssv678821,nssv684442,nssv690918,nssv656549,nssv673878,nssv686982,nssv660793 M 2026 0 16 "" nsv4584 4 164370753 164404378 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4793 S 9 1 0 "" NA19129 nsv4585 4 164423214 164440261 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8022 S 9 0 1 "" NA12156 nsv289298 4 164434942 164435287 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv307876 M 24 "" nsv289835 4 164537601 164538473 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308413 M 24 "" nsv527314 4 164562300 164569488 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703738 S 2026 0 1 "" nsv507208 4 164587758 164593758 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617651 S 4 1 0 "" CHM nsv527691 4 164634502 164652713 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704167 S 2026 1 0 "" esv2750622 4 164642722 164644688 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99110 S 51 0 1 "" 21938 esv2750557 4 164646788 164649768 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100773 S 51 1 0 "" 21656 nsv507209 4 164654606 164660606 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617652 S 4 1 0 "" CHM nsv4586 4 164846501 164882009 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3299 S 9 1 0 "" NA12878 nsv292001 4 164859546 164859858 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310579 M 24 "" nsv818295 4 164985378 165010531 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416435 S 112 0 1 "" NA18517 nsv293053 4 165015904 165016737 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311631 M 24 "" nsv830138 4 165031329 165189489 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444059 S 95 1 0 "" nsv525419 4 165148122 165177848 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701543 S 2026 0 1 "" nsv521840 4 165218114 165223552 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694103 S 2026 0 1 "" nsv509943 4 165261492 165267492 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621251 S 4 0 1 "" NA15510 nsv4588 4 165293323 165338206 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8023 S 9 0 1 "" NA12156 nsv526583 4 165464094 165465986 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702901 S 2026 1 0 "" nsv291507 4 165813044 165813044 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310085 M 24 "" nsv471748 4 165858043 165858271 CNV Loss Hinds et al 2006 16327809 Oligo_aCGH,PCR Custom Perlegen arrays nssv646029 M 0.496 95 "" nsv4589 4 165887472 165932302 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8024 S 9 0 1 "" NA12156 nsv461822 4 165888639 166133152 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538168 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00855 nsv292153 4 165889635 165891530 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310731 M 24 "" nsv516704 4 165934345 165944945 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv670274,nssv682114 M 2026 0 2 "" nsv830139 4 165976804 166146671 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444060 S 95 1 0 "" dgv1710e1 4 166006477 166008354 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv6804,esv1168 M 271 0 0 "" NA18594 nsv10604 4 166011431 166081932 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13049,nssv13857 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA19132,NA19173 dgv178n6 4 166047003 166047184 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv292491,nsv293058 M 24 "" nsv293502 4 166067264 166076222 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv312080 M 24 "" nsv507210 4 166100666 166106666 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622914,nssv617653,nssv620269 M 4 3 0 "" CHM,NA15510,NA18994 dgv1711e1 4 166159421 166333955 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv8207,esv132 M 271 0 0 "" NA19116 nsv528320 4 166166919 166185354 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704901 S 2026 0 1 "" nsv528686 4 166171964 166287773 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705329 S 2026 1 0 "" esv33071 4 166182501 166190770 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98671 S 51 0 1 "" 21606 nsv830140 4 166213604 166314217 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444061 S 95 0 1 "" nsv517554 4 166217556 166235940 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv659281,nssv687414,nssv654710,nssv660872,nssv674239,nssv652348,nssv683366,nssv661177,nssv664010,nssv693578,nssv688032,nssv656843,nssv664384,nssv652876,nssv668854,nssv664830,nssv669809,nssv661611,nssv684463,nssv683243,nssv665019,nssv668682,nssv676757,nssv655013,nssv673718,nssv671531,nssv657620,nssv669283,nssv672188,nssv685170 M 2026 0 30 "" nsv10607 4 166219070 166244154 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13821,nssv13782 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA18502,NA18860 esv33435 4 166273781 166282066 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100858 S 51 0 1 "" 21656 nsv293285 4 166302739 166306859 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311863 M 24 "" nsv518959 4 166368420 166372371 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696426 S 2026 0 1 "" nsv507211 4 166391556 166397556 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621769,nssv622915 M 4 2 0 "" NA10860,NA18994 nsv289926 4 166608410 166609472 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308504 M 24 "" nsv508327 4 166782045 166833284 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618756 S 4 0 1 "" NA10860 nsv830141 4 166860513 167047231 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444063 S 95 1 0 "" nsv4590 4 167133882 167167192 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8025 S 9 1 0 "" NA12156 nsv821638 4 167195238 167620230 CNV Loss Sebat_et_al_2004 15273396 ROMA Custom Nimblegen photoprint 85000 probe ROMA oligo array nssv1421382 S 31 0 1 "" nsv830142 4 167293160 167453527 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444064 S 95 0 1 "" nsv292670 4 167361922 167362517 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311248 M 24 "" nsv291079 4 167375067 167375067 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309657 M 24 "" nsv291846 4 167460592 167460592 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310424 M 24 "" dgv179n6 4 167465693 167466050 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv293504,nsv290654 M 24 "" nsv4591 4 167492814 167537971 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8026 S 9 0 1 "" NA12156 nsv517047 4 167520907 167542996 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv653685,nssv672872 M 2026 0 2 "" nsv507212 4 167687528 167693528 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620270,nssv617654,nssv621770 M 4 3 0 "" CHM,NA10860,NA15510 nsv4592 4 167723412 167750688 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3300 S 9 1 0 "" NA12878 nsv830143 4 167743837 167895619 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444066,nssv1444065 M 95 1 1 "" dgv180n6 4 167769635 167769758 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv292106,nsv289402 M 24 "" nsv508328 4 167844716 167931586 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618757 S 4 0 1 "" NA10860 nsv507213 4 167851514 167857514 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620271 S 4 1 0 "" NA15510 nsv4593 4 168031604 168086065 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2492,nssv3301,nssv9879,nssv7130,nssv4794,nssv427 M 9 0 6 "" NA12156,NA12878,NA18507,NA18555,NA19129,NA19240 nsv508329 4 168049190 168068464 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619948,nssv622506,nssv617501 M 4 0 3 "" CHM,NA15510,NA18994 nsv528717 4 168099328 168113194 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705367 S 2026 0 1 "" dgv1712e1 4 168266226 168565721 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv247,essv15459 M 271 0 0 "" NA18505 nsv293099 4 168404877 168404877 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311677 M 24 "" nsv4594 4 168593388 168624178 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10428 S 9 1 0 "" NA18956 esv2422317 4 168613267 168868488 CNV Deletion Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161247 S 181 0 1 "" ND04980 nsv516858 4 168638801 168638979 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv654482,nssv679324 M 2026 0 2 "" nsv461823 4 168691478 168853375 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538169 S 1557 1 0 "" 1780862576_A nsv830144 4 168763661 168937738 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444069,nssv1444068,nssv1444067 M 95 3 0 "" nsv461824 4 168771451 169001169 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538170 S 1557 0 1 "" NINDS_160 nsv4595 4 168791711 168817031 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10429 S 9 0 1 "" NA18956 nsv461825 4 168964738 169006643 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538171 S 1557 0 1 "" NINDS_43 nsv830145 4 168972764 169118719 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444070 S 95 0 1 "" nsv290269 4 168973055 168980383 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308847 M 24 "" nsv521377 4 168982765 169018536 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697987 S 2026 0 1 "" nsv519784 4 168991450 169001169 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv686817,nssv658564 M 2026 0 2 "" nsv291668 4 169100378 169100378 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310246 M 24 "" dgv1713e1 4 169109321 169306430 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv15864,essv10153,essv7852 M 271 0 0 "" NA18558,NA19130,NA19223 dgv1714e1 4 169109321 169472158 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv816,essv640,essv1822,essv13780,essv18173,essv274,essv21854,essv20139,essv23853,essv2804,essv2968,essv8458,essv8171,essv23220,essv11986,essv5258,essv2603,essv24965,essv53,essv6610,essv13174,essv3471,essv14882,essv3873,essv16519,essv5821,essv2268,essv18094,essv1226,essv17488,essv16870,essv1758,essv9410,essv5318,essv2169,essv4598,essv7587,essv2462,essv3139,essv5033,essv2535,essv4195,essv22577,essv7107,essv1408,essv20790,essv8731,essv10921,essv16651,essv14598,essv15284,essv18660,essv22455,essv8844,essv20346,essv10040,essv24076,essv9159,essv16134,essv20436,essv22994,essv7141,essv4620,essv8328,essv8183,essv13674,essv7368,essv22343,essv12473,essv17063,essv531,essv20230,essv2688,essv14548,essv24753,essv5208,essv10790,essv4175,essv21759,essv15084,essv21659,essv1526,essv15417,essv23478,essv19009,essv22413,essv9022,essv6743,essv22078,essv5109,essv18849,essv17242,essv16422,essv10405,essv19670,essv12164,essv1023,essv21136,essv11183,essv11013,essv6173,essv14140,essv5992,essv8379,essv9260,essv5171,essv19629,essv23656,essv15585,essv15533,essv11955,essv22384,essv14387,essv12293,essv21016,essv14348,essv14462,essv17020,essv18433,essv11650,essv1928,essv918,essv11797,essv23989,essv6395,essv20190,essv4816,essv11548,essv14709,essv6974,essv19409,essv20065,essv4027,essv5925,essv6225,essv11859,essv4990,essv19238,essv8948,essv20896,essv13101,essv3178,essv17642,essv9385,essv24501,essv10456,essv24875,esv530,essv4434,essv13914,essv23034,essv5557,essv6866,essv22498,essv10664,essv23328,essv17316,essv7022,essv10198,essv24592,essv19920,essv21237,essv13416,essv17595,essv3220,essv17803,essv12421,essv12985,essv16338,essv24307,essv23935,essv14086,essv6668,essv15365,essv18117,essv17165,essv19496,essv7277,essv14980,essv19102,essv23770,essv4282,essv13583,essv10852,essv4474,essv18350,essv16737,essv21968,essv5755,essv7740,essv23188,essv4895,essv15613,essv17717,essv9598,essv15794,essv9745,essv21558,essv17919,essv12747,essv18297,essv24408,essv22634,essv18738,essv1631,essv20628,essv24661,essv3786,essv12784,essv1471,essv5444,essv4694,essv22846,essv3376,essv21332,essv3723,essv24903,essv10574,essv22745,essv262,essv23133,essv20664,essv2086,essv22913,essv13553,essv1198,essv12639,essv16276,essv490,essv11242,essv2887,essv21430,essv19196,essv11437,essv6820,essv16035,essv23616,essv1155,essv9761,essv24158,essv23423,essv3527,essv8609,essv12567,essv11737,essv148,essv18367,essv6368,essv23560,essv9903,essv10291,essv3992,essv22242,essv21245,essv315 M 271 0 0 "" NA06985,NA06991,NA06993,NA06994,NA07000,NA07019,NA07022,NA07029,NA07034,NA07048,NA07055,NA07056,NA07345,NA07348,NA07357,NA10830,NA10831,NA10838,NA10839,NA10846,NA10847,NA10854,NA10855,NA10856,NA10859,NA10860,NA10861,NA10863,NA11829,NA11830,NA11831,NA11832,NA11839,NA11840,NA11881,NA11882,NA11992,NA11993,NA11994,NA11995,NA12003,NA12004,NA12005,NA12006,NA12044,NA12057,NA12144,NA12145,NA12146,NA12154,NA12155,NA12156,NA12234,NA12236,NA12239,NA12248,NA12249,NA12264,NA12707,NA12716,NA12717,NA12750,NA12751,NA12752,NA12753,NA12760,NA12761,NA12762,NA12763,NA12801,NA12802,NA12812,NA12813,NA12814,NA12815,NA12864,NA12865,NA12872,NA12873,NA12874,NA12875,NA12878,NA12891,NA12892,NA18500,NA18501,NA18502,NA18503,NA18504,NA18505,NA18506,NA18507,NA18508,NA18515,NA18516,NA18517,NA18521,NA18522,NA18523,NA18524,NA18526,NA18529,NA18532,NA18537,NA18542,NA18545,NA18547,NA18550,NA18552,NA18555,NA18561,NA18562,NA18563,NA18564,NA18566,NA18570,NA18571,NA18572,NA18573,NA18576,NA18577,NA18579,NA18582,NA18592,NA18593,NA18594,NA18603,NA18605,NA18608,NA18609,NA18611,NA18612,NA18620,NA18621,NA18622,NA18624,NA18632,NA18635,NA18636,NA18637,NA18852,NA18853,NA18854,NA18855,NA18856,NA18857,NA18858,NA18859,NA18860,NA18861,NA18862,NA18863,NA18870,NA18871,NA18872,NA18912,NA18913,NA18914,NA18942,NA18943,NA18944,NA18945,NA18947,NA18948,NA18949,NA18951,NA18952,NA18953,NA18959,NA18960,NA18964,NA18965,NA18966,NA18967,NA18968,NA18969,NA18970,NA18971,NA18973,NA18974,NA18975,NA18976,NA18978,NA18980,NA18981,NA18987,NA18990,NA18991,NA18992,NA18994,NA18995,NA18997,NA18998,NA18999,NA19000,NA19003,NA19005,NA19007,NA19012,NA19092,NA19093,NA19094,NA19098,NA19099,NA19100,NA19101,NA19102,NA19103,NA19116,NA19119,NA19120,NA19127,NA19128,NA19129,NA19131,NA19132,NA19137,NA19138,NA19139,NA19140,NA19141,NA19142,NA19143,NA19144,NA19145,NA19152,NA19153,NA19154,NA19159,NA19160,NA19161,NA19171,NA19172,NA19173,NA19192,NA19193,NA19194,NA19200,NA19201,NA19202,NA19203,NA19204,NA19205,NA19206,NA19207,NA19208,NA19209,NA19210,NA19211,NA19221,NA19222,NA19238,NA19239,NA19240 nsv507214 4 169153097 169159097 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622916,nssv621771,nssv617655 M 4 3 0 "" CHM,NA10860,NA18994 dgv1715e1 4 169164689 169472158 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv3271,essv17875,essv19755,essv7390,essv21401,essv7699,essv2352,essv18566,essv3781 M 271 0 0 "" NA10835,NA10851,NA10857,NA12740,NA18623,NA18633,NA18940,NA18961,NA18972 dgv1716e1 4 169169911 169370898 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv18684,essv23094 M 271 0 0 "" NA12043,NA12056 dgv105n17 4 169169911 169373658 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv436974,nsv436973 M 60 0 2 "" NA10851,NA10857 nsv515789 4 169170343 169172909 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv683057,nssv664789,nssv685102,nssv682607,nssv691920,nssv689681,nssv664927,nssv663584,nssv682888 M 2026 0 9 "" nsv526543 4 169170343 169190077 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702857 S 2026 0 1 "" dgv194e55 4 169181116 169420902 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv2752039,esv35159,esv2752040 M 771 0 3 "" BEC_101,BEC_452,NA10857 nsv515790 4 169182420 169362773 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv687620,nssv689518,nssv677677,nssv693234,nssv682889,nssv697528,nssv689682,nssv680540,nssv698937,nssv682608,nssv660520,nssv685103,nssv655070,nssv679806,nssv691921,nssv665973,nssv672599,nssv656520,nssv679342,nssv683058,nssv681065,nssv664790,nssv661639,nssv668388,nssv660387,nssv677876,nssv675352,nssv672424,nssv684032,nssv663585 M 2026 21 9 "" nsv10608 4 169182712 169370027 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13079,nssv12685,nssv12367,nssv12376,nssv12225,nssv14453,nssv13814,nssv11590,nssv13812,nssv14880,nssv11945,nssv12292,nssv12347,nssv12620,nssv12858,nssv12903,nssv12362,nssv13963,nssv11629,nssv12536,nssv12838,nssv13231,nssv13851,nssv13658,nssv12156,nssv11861,nssv13887,nssv12684,nssv12844,nssv12939 M 31 30 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10847,NA10863,NA11830,NA12155,NA12740,NA12802,NA12872,NA18502,NA18504,NA18517,NA18537,NA18552,NA18563,NA18564,NA18572,NA18853,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19144,NA19173,NA19221,NA19240 dgv682n27 4 169184835 169362773 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv461829,nsv461826,nsv461827 M 1557 0 3 "" 1780862574_A,HGDP00722,NINDS_17 nsv818296 4 169190077 169362773 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416772,nssv1416761,nssv1416235,nssv1416234 M 112 0 4 "" NA10851,NA10857,NA12043,NA12056 nsv461830 4 169190160 169215858 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538176 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00925 nsv441926 4 169193172 169218836 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv818297 4 169194951 169215858 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416342,nssv1416343 M 112 2 0 "" NA18856,NA18857 nsv461831 4 169198002 169240912 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538177 S 1557 0 1 "" 1780862162_A nsv437946 4 169198326 169211424 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv468662,nssv468661 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA10851,NA12056 nsv291807 4 169201280 169201280 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310385 M 24 "" nsv437947 4 169340463 169362773 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv468665,nssv468664 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA10851,NA12056 nsv830146 4 169350879 169518142 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444071 S 95 1 0 "" nsv521908 4 169458424 169463635 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694679 S 2026 0 1 "" nsv293790 4 169478911 169484453 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv312368 M 24 "" nsv290683 4 169495571 169495656 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309261 M 24 "" nsv4596 4 169524217 169559616 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3302 S 9 1 0 "" NA12878 nsv509023 4 169776826 169792576 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619387 S 4 1 0 "" NA10860 nsv528045 4 169823358 169829047 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704577 S 2026 1 0 "" nsv461834 4 169905069 169926272 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538178 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00812 nsv830147 4 169911819 170109724 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444072 S 95 1 0 "" nsv509944 4 169912273 169918273 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618191 S 4 0 1 "" CHM nsv524640 4 170017809 170050762 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700605 S 2026 1 0 "" nsv291025 4 170029787 170034479 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309603 M 24 "" nsv437949 4 170063978 170068809 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv468667,nssv468666 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA18852,NA18861 nsv290017 4 170066952 170070608 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308595 M 24 "" nsv525234 4 170139042 170144523 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701323 S 2026 1 0 "" nsv527077 4 170139361 170141325 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703456 S 2026 1 0 "" nsv4597 4 170315761 170347683 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3303 S 9 1 0 "" NA12878 nsv522452 4 170349486 170383677 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705815 S 2026 0 1 "" nsv4599 4 170358523 170391154 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv428 S 9 1 0 "" NA19240 nsv290567 4 170474250 170474250 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309145 M 24 "" nsv507215 4 170584448 170590448 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622917,nssv621772,nssv617656,nssv620272 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv292495 4 170653195 170653615 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311073 M 24 "" nsv518832 4 170955548 171001282 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696285 S 2026 0 1 "" nsv4600 4 171004783 171014642 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3140 S 9 1 0 "" NA18555 nsv830149 4 171107478 171295174 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444075 S 95 0 1 "" nsv291990 4 171209328 171209328 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310568 M 24 "" nsv520717 4 171256209 171261523 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697572 S 2026 0 1 "" nsv4601 4 171344602 171389294 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8027 S 9 0 1 "" NA12156 nsv830150 4 171368643 171526498 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444076 S 95 1 0 "" nsv4602 4 171436714 171475921 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8028 S 9 0 1 "" NA12156 nsv518567 4 171478066 171494906 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696010 S 2026 0 1 "" nsv4603 4 171529837 171563402 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3141 S 9 1 0 "" NA18555 nsv293347 4 171606536 171608870 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311925 M 24 "" nsv437456 4 171640647 171649775 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467337 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19211 nsv10609 4 171642071 171649563 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13139 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19173 nsv441927 4 171642812 171647886 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv509945 4 171648810 171654810 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623965,nssv622072,nssv618192,nssv621252 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv291133 4 171666797 171666862 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309711 M 24 "" nsv7366 4 171691093 171988969 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3304 S 9 0 0 "" NA12878 nsv507216 4 171691327 171697327 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621773,nssv622918,nssv620273 M 4 3 0 "" NA10860,NA15510,NA18994 nsv290126 4 171702325 171702325 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308704 M 24 "" nsv830151 4 171798296 171952597 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444077 S 95 0 1 "" nsv507217 4 171855509 171861509 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617657,nssv622919 M 4 2 0 "" CHM,NA18994 nsv461835 4 172016781 172063598 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538179 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00746 nsv521422 4 172182986 172199279 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698032 S 2026 0 1 "" nsv508330 4 172191871 172196552 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622507 S 4 0 1 "" NA18994 nsv293463 4 172263586 172263904 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv312041 M 24 "" nsv290546 4 172344414 172344476 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309124 M 24 "" nsv461837 4 172464017 172522627 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538180 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01347 nsv461838 4 172636283 173813995 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538181 S 1557 1 0 "" 1780854479_A dgv1717e1 4 172641989 172669987 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv422,essv16336 M 271 0 0 "" NA19193 dgv1718e1 4 172699064 172742341 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv25045,esv986,essv24036 M 271 0 0 "" NA12801,NA12873 essv20528 4 172722769 172742270 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12716 nsv4604 4 172735394 172800516 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8029,nssv4675 M 9 0 2 "" NA12156,NA19129 nsv437458 4 172748118 172754599 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467339 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19221 nsv508331 4 172748804 172754328 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622508,nssv617502 M 4 0 2 "" CHM,NA18994 nsv10610 4 172748887 172757176 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12255,nssv12186,nssv13169,nssv11620,nssv13917,nssv14483,nssv12933,nssv13844,nssv12714,nssv12397,nssv13993,nssv12715,nssv11975 M 31 5 8 Samples from several populations that are part of the HapMap project. "" NA07048,NA10847,NA10863,NA11830,NA12802,NA18504,NA18517,NA18537,NA18972,NA18975,NA18980,NA19132,NA19173 nsv442930 4 172749614 172752663 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv526416 4 172779825 172868963 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702716 S 2026 0 1 "" nsv527739 4 173146735 173190930 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704223 S 2026 0 1 "" nsv520744 4 173172491 173272333 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697586 S 2026 1 0 "" nsv519578 4 173217149 173233342 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv656953,nssv657864,nssv661352,nssv683826,nssv686366 M 2026 0 5 "" nsv830152 4 173281094 173461797 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444078 S 95 0 1 "" nsv525324 4 173319655 173356273 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701434 S 2026 0 1 "" nsv4605 4 173339962 173388177 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9651,nssv8030,nssv429 M 9 0 3 "" NA12156,NA18507,NA19240 nsv437950 4 173348310 173365702 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv468690,nssv468686,nssv468671,nssv468681,nssv468691,nssv468680,nssv468676,nssv468679,nssv468683,nssv468687,nssv468677,nssv468669,nssv468689,nssv468668,nssv468678,nssv468692,nssv468675,nssv468672,nssv468670,nssv468673,nssv468694,nssv468682,nssv468688,nssv468695,nssv468684,nssv468693 M 269 0 25 Samples from several populations that are part of the HapMap project. "" NA06991,NA06993,NA07034,NA07048,NA07055,NA10835,NA10857,NA10863,NA12145,NA12155,NA12234,NA12236,NA12239,NA12249,NA12264,NA12753,NA12760,NA12762,NA12864,NA12875,NA12892,NA18558,NA18620,NA18632,NA19005 nsv508332 4 173360416 173376501 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617503 S 4 0 1 "" CHM nsv10611 4 173362583 173368153 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11891,nssv12216,nssv11650,nssv13881,nssv12392,nssv13874,nssv12650,nssv14910,nssv14513,nssv13261,nssv12963,nssv12005,nssv13199,nssv12457,nssv13688,nssv12874,nssv12888,nssv13842 M 31 0 18 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10847,NA10863,NA11830,NA12155,NA12802,NA12872,NA18502,NA18517,NA18564,NA18853,NA18860,NA18972,NA19173,NA19221,NA19240 nsv289632 4 173363370 173367660 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308210 M 24 "" nsv433470 4 173364350 173365605 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463351 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA18507 esv33022 4 173365184 173374546 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98927 S 51 1 0 "" 21606 nsv830153 4 173412736 173586687 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444079 S 95 0 1 "" nsv291048 4 173551164 173551217 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309626 M 24 "" nsv4606 4 173698177 173730581 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4796 S 9 1 0 "" NA19129 nsv508333 4 173744416 173822405 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622509,nssv619949,nssv618759,nssv617504 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv4607 4 173781023 173832318 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2493,nssv9652,nssv3305,nssv10431,nssv11094,nssv7131 M 9 0 6 "" NA12156,NA12878,NA15510,NA18507,NA18555,NA18956 nsv10612 4 173789801 173793429 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11680 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA12802 nsv263 4 173793049 173813536 CNV Loss Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv263 S 1 0 1 "" NA15510 nsv10613 4 173799464 173811343 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11921,nssv12993,nssv12406,nssv12377,nssv12285,nssv13904,nssv12566,nssv13291,nssv12918,nssv12246,nssv11659,nssv12904,nssv13947,nssv13229,nssv12745,nssv12744,nssv14543,nssv13872,nssv12322,nssv11710 M 31 2 18 Samples from several populations that are part of the HapMap project. "" NA07048,NA10839,NA10863,NA12802,NA12872,NA18502,NA18517,NA18537,NA18552,NA18563,NA18564,NA18572,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19173,NA19240 nsv442931 4 173799677 173803373 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv289548 4 173799763 173808249 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308126 M 24 "" esv33205 4 173824071 173826772 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99905 S 51 0 1 "" 22086 nsv290804 4 173842668 173842668 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309382 M 24 "" dgv181n6 4 173902493 173902578 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv289884,nsv292291 M 24 "" nsv289404 4 174173500 174179057 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv307982 M 24 "" nsv4608 4 174180237 174186548 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8031 S 9 0 1 "" NA12156 nsv518900 4 174505233 174517604 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696358 S 2026 1 0 "" nsv527434 4 174509414 174511682 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703874 S 2026 1 0 "" nsv4610 4 174591756 174627357 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4676,nssv8032 M 9 0 2 "" NA12156,NA19129 nsv461841 4 174705393 174797743 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538183 S 1557 0 1 "" 1780862127_A nsv507218 4 174716887 174722887 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617658 S 4 1 0 "" CHM nsv292878 4 174781022 174781077 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311456 M 24 "" nsv518998 4 174797743 174828813 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696465 S 2026 0 1 "" nsv507219 4 174799513 174805513 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620274 S 4 1 0 "" NA15510 nsv522261 4 174818226 174834553 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695041 S 2026 0 1 "" nsv292538 4 174859809 174864784 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311116 M 24 "" nsv508334 4 174894618 174944267 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618760,nssv622510 M 4 0 2 "" NA10860,NA18994 nsv830154 4 175156713 175315370 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444080 S 95 0 1 "" nsv527872 4 175248699 175283308 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704371 S 2026 0 1 "" nsv830155 4 175318539 175511213 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444081 S 95 1 0 "" nsv508335 4 175336452 175369822 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622511 S 4 0 1 "" NA18994 nsv509025 4 175598200 175611099 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619388 S 4 1 0 "" NA10860 nsv510928 4 175598200 175618730 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618606,nssv624294 M 4 0 0 "" CHM,NA18994 nsv290531 4 175638232 175638291 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309109 M 24 "" nsv525487 4 175774834 175845597 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701616 S 2026 1 0 "" nsv509946 4 175784474 175790474 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623966 S 4 0 1 "" NA18994 nsv830156 4 176099770 176291165 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444083,nssv1444082 M 95 2 0 "" nsv507220 4 176114839 176120839 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620275,nssv621774 M 4 2 0 "" NA10860,NA15510 nsv461842 4 176348789 176448310 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538184 S 1557 0 1 "" 1780862598_A nsv292351 4 176495275 176495663 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310929 M 24 "" nsv4611 4 176575059 176610033 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv430 S 9 1 0 "" NA19240 nsv290503 4 176633129 176633129 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309081 M 24 "" nsv290939 4 176731258 176731421 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309517 M 24 "" nsv830157 4 177140476 177296644 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444084 S 95 1 0 "" nsv290701 4 177253023 177253023 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309279 M 24 "" nsv510894 4 177411837 177433247 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618607 S 4 0 0 "" CHM nsv526625 4 177497132 177498999 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702946 S 2026 0 1 "" nsv293663 4 177514886 177515885 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv312241 M 24 "" nsv4612 4 177539194 177556208 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8034 S 9 0 1 "" NA12156 nsv4613 4 177964612 177995473 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3307 S 9 1 0 "" NA12878 nsv289631 4 177969184 177969243 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308209 M 24 "" nsv289896 4 178036325 178036380 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308474 M 24 "" nsv461843 4 178343727 178464678 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538185 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01194 nsv292206 4 178380996 178380996 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310784 M 24 "" nsv519492 4 178394297 178487153 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv687780,nssv694086,nssv683959,nssv691122,nssv692156,nssv690943,nssv678822,nssv691922,nssv656409,nssv688775,nssv675967,nssv693069 M 2026 0 12 "" nsv290398 4 178531987 178532315 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308976 M 24 "" dgv1719e1 4 178540618 178780523 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1779,esv821 M 271 0 0 "" NA18997 nsv520352 4 178545485 178553309 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv663108,nssv685444 M 2026 0 2 "" nsv10614 4 178578974 178591849 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12352 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18942 nsv441928 4 178581886 178590413 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv520504 4 178583675 178591110 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv671896,nssv686367 M 2026 0 2 "" nsv818298 4 178583675 178591110 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417286 S 112 0 1 "" NA18608 essv1584 4 178588468 178692863 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18997 esv34846 4 178604162 178676259 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6978286,essv6978287,essv6986584 M 771 1 0 "" NA18997 nsv508336 4 178656060 178665323 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622512 S 4 0 1 "" NA18994 nsv4614 4 178745850 178770567 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv431 S 9 0 1 "" NA19240 nsv10615 4 178749967 178762381 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12680,nssv13321 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18853,NA19240 nsv441929 4 178750943 178761659 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv292239 4 178754098 178754098 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310817 M 24 "" nsv290487 4 178767056 178773129 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309065 M 24 "" nsv10616 4 178774723 178781901 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13911 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18860 dgv329n21 4 178794250 178877065 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv524425,nsv517838 M 2026 0 2 "" nsv441930 4 178843185 178861755 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv515655 4 178847122 178854971 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv664262,nssv687528 M 2026 0 2 "" nsv10618 4 178965065 178991574 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13934,nssv13259 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18517,NA19173 nsv4615 4 178967231 179000336 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9402 S 9 0 1 "" NA18517 nsv437459 4 178968417 178987057 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467340 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19173 nsv515765 4 178970055 178973457 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv682744,nssv684405,nssv684700,nssv654965,nssv674909,nssv690944,nssv668596,nssv656658,nssv659783,nssv672935,nssv672425,nssv676183,nssv688175,nssv685353,nssv662544,nssv664712,nssv659308,nssv662934,nssv657506 M 2026 0 19 "" nsv818299 4 178970055 178973457 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416436,nssv1416542,nssv1416541 M 112 0 3 "" NA18517,NA19171,NA19173 nsv437951 4 178970055 178976307 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv468697,nssv468699,nssv468698,nssv468700 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA19171,NA19173 nsv441931 4 178971680 178984862 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv289913 4 179032911 179032911 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308491 M 24 "" nsv292726 4 179206395 179206449 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311304 M 24 "" nsv289663 4 179206455 179206509 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308241 M 24 "" dgv106n17 4 179256965 179271447 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437461,nsv437460 M 60 0 2 "" NA18863,NA19194 nsv818301 4 179258337 179266560 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418450,nssv1418451 M 112 0 2 "" NA19193,NA19194 nsv523069 4 179261157 179266560 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698756 S 2026 0 1 "" nsv442932 4 179265579 179267680 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv293654 4 179267110 179267110 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv312232 M 24 "" nsv4616 4 179289813 179325019 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3308 S 9 1 0 "" NA12878 nsv519076 4 179330637 179351370 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696548 S 2026 0 1 "" nsv524616 4 179377210 179408143 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700577 S 2026 0 1 "" nsv526491 4 179384771 179419853 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702800 S 2026 0 1 "" nsv830158 4 179394055 179539050 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444086 S 95 1 0 "" nsv509947 4 179423391 179429391 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622073,nssv618193,nssv623967,nssv621253 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv290732 4 179512389 179513636 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309310 M 24 "" nsv830160 4 179514787 179682406 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444088,nssv1444087 M 95 2 0 "" nsv519234 4 179547386 179549317 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696725 S 2026 0 1 "" nsv290305 4 179615788 179621580 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308883 M 24 "" nsv522832 4 179745042 179749271 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698482 S 2026 0 1 "" nsv509948 4 179815005 179821005 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622074,nssv618194 M 4 0 2 "" CHM,NA10860 nsv509949 4 179935302 179941302 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622075 S 4 0 1 "" NA10860 nsv525204 4 179976896 180045074 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701286 S 2026 0 1 "" nsv461845 4 179993235 180045074 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538186 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00627 nsv4617 4 180031514 180076251 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8035 S 9 0 1 "" NA12156 nsv461846 4 180040519 180447826 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538187 S 1557 0 1 "" 1780854302_A nsv528794 4 180045074 180059758 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705465 S 2026 1 0 "" nsv507221 4 180196901 180202901 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622921,nssv617659 M 4 2 0 "" CHM,NA18994 nsv523928 4 180523736 180582582 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699773 S 2026 0 1 "" nsv461848 4 180613497 180736510 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538188 S 1557 0 1 "" 1780854023_A nsv521929 4 180667810 180677600 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694111 S 2026 1 0 "" nsv293329 4 180781373 180781373 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311907 M 24 "" nsv289898 4 180975441 180975516 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308476 M 24 "" nsv292604 4 180975510 180975593 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311182 M 24 "" nsv830161 4 181074859 181249302 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444101,nssv1444097,nssv1444099,nssv1444100,nssv1444108,nssv1444103,nssv1444102,nssv1444105,nssv1444104,nssv1444109,nssv1444112,nssv1444111,nssv1444098,nssv1444095,nssv1444106,nssv1444091,nssv1444094,nssv1444090,nssv1444089,nssv1444110,nssv1444093,nssv1444092 M 95 22 0 "" nsv293825 4 181101717 181101768 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv312403 M 24 "" nsv289816 4 181153725 181153725 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308394 M 24 "" nsv437462 4 181491231 181524038 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467343 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19194 nsv518756 4 181498377 181498474 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696204 S 2026 0 1 "" nsv10619 4 181509772 181514449 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13941,nssv12710,nssv13351,nssv12868,nssv13964 M 31 0 5 Samples from several populations that are part of the HapMap project. "" NA18517,NA18853,NA18860,NA19144,NA19240 nsv291747 4 181510265 181513792 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310325 M 24 "" nsv517104 4 181510452 181510834 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv693070,nssv683899,nssv657997,nssv665806,nssv687593,nssv672269,nssv654966,nssv672325,nssv690457,nssv664991,nssv653794,nssv666950,nssv667157,nssv693295,nssv663494,nssv663952,nssv653038,nssv691487,nssv666563 M 2026 0 19 "" nsv461850 4 181554694 181602470 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538189 S 1557 0 1 "" NINDS_189 nsv4618 4 181605602 181633288 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4797 S 9 1 0 "" NA19129 nsv522136 4 181659043 181711594 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694910 S 2026 1 0 "" nsv519625 4 181674528 181685719 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696957 S 2026 1 0 "" nsv292148 4 181686626 181686943 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310726 M 24 "" nsv290858 4 181692467 181698407 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309436 M 24 "" nsv461852 4 181750779 181796370 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538191 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00150 nsv509950 4 181810071 181816071 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623968,nssv622076,nssv621254 M 4 0 3 "" NA10860,NA15510,NA18994 nsv461853 4 181815769 181823403 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538192 S 1557 0 1 "" 1780854219_A dgv1720e1 4 181842862 181847554 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv7512,esv917 M 271 0 0 "" NA18532 esv35033 4 181842862 181852816 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6988159,essv6979355 M 771 0 1 "" NA18532 nsv524530 4 181883830 181934385 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700480 S 2026 1 0 "" nsv830162 4 181917107 182108244 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444113 S 95 0 1 "" dgv182n6 4 181924578 181924903 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv291026,nsv292022 M 24 "" nsv4619 4 182124422 182146272 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3309 S 9 1 0 "" NA12878 dgv183n6 4 182251936 182253453 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv289983,nsv290062 M 24 "" nsv289836 4 182376624 182377946 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308414 M 24 "" nsv4621 4 182520258 182543645 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2494,nssv7132,nssv9403,nssv4798,nssv9653 M 9 5 0 "" NA12156,NA18507,NA18517,NA18555,NA19129 nsv509026 4 182530425 182544796 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623422,nssv618030 M 4 2 0 "" CHM,NA18994 nsv292979 4 182534619 182541237 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311557 M 24 "" nsv830163 4 182688067 182852019 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444114 S 95 1 0 "" nsv507222 4 182689820 182695820 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620276 S 4 1 0 "" NA15510 nsv290382 4 182718529 182720296 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308960 M 24 "" nsv522151 4 182774844 182796964 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694136 S 2026 0 1 "" nsv4622 4 182783369 182815857 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10432 S 9 1 0 "" NA18956 nsv830164 4 182946955 183126453 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444115 S 95 1 0 "" nsv520076 4 182976393 182976758 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv693863,nssv660521 M 2026 0 2 "" dgv1721e1 4 183006629 183024960 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv7053,esv1401 M 271 0 0 "" NA18612 nsv818302 4 183009625 183018356 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417354 S 112 0 1 "" NA18612 nsv4623 4 183139904 183161418 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8036 S 9 1 0 "" NA12156 nsv291589 4 183152296 183152379 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310167 M 24 "" nsv4624 4 183221637 183237698 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8037 S 9 1 0 "" NA12156 nsv289372 4 183310240 183310355 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv307950 M 24 "" nsv290818 4 183310335 183310335 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309396 M 24 "" nsv293084 4 183336299 183336473 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311662 M 24 "" nsv4625 4 183343655 183371344 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4799 S 9 1 0 "" NA19129 nsv520666 4 183350223 183354960 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv687594,nssv678016,nssv673719 M 2026 0 3 "" nsv461855 4 183496380 183512761 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538193 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00023 nsv461856 4 183571673 183604370 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538194 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01057 nsv461857 4 183604370 183632611 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538195 S 1557 0 1 "" 1782681086_A nsv520838 4 183622260 183632611 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv676284,nssv705374,nssv701553,nssv687990 M 2026 0 4 "" nsv528891 4 183629810 183646498 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705575 S 2026 0 1 "" nsv524982 4 183647738 183670119 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701011 S 2026 0 1 "" nsv518484 4 183664774 183670119 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695923 S 2026 0 1 "" nsv520498 4 183779502 183780655 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv671876,nssv681226 M 2026 0 2 "" nsv518587 4 183779502 183787868 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696034 S 2026 1 0 "" nsv10620 4 183924911 183929768 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13971 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18860 dgv1722e1 4 183933465 184117496 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv10412,esv172 M 271 0 0 "" NA19222 nsv10621 4 183944291 183947296 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv11740,nssv12804,nssv12382,nssv13718,nssv12466,nssv12934 M 31 0 6 Samples from several populations that are part of the HapMap project. "" NA10839,NA12155,NA12802,NA18552,NA18942,NA18975 nsv517941 4 183986060 183988182 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694184 S 2026 0 1 "" nsv290381 4 184016679 184023757 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308959 M 24 "" nsv4626 4 184053418 184063337 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8038 S 9 0 1 "" NA12156 nsv509027 4 184092878 184170538 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619390 S 4 1 0 "" NA10860 nsv10622 4 184101506 184125607 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14940 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19221 nsv4627 4 184109260 184141796 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2495 S 9 1 0 "" NA18555 nsv461858 4 184255183 184307834 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538196 S 1557 0 1 "" 1780854537_A nsv4628 4 184286460 184324528 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8039 S 9 0 1 "" NA12156 nsv517885 4 184346175 184385866 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694176 S 2026 0 1 "" nsv4629 4 184447366 184492290 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8040 S 9 0 1 "" NA12156 nsv292991 4 184460568 184460670 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311569 M 24 "" nsv290254 4 184460622 184460720 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308832 M 24 "" nsv507223 4 184524309 184530309 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620277,nssv621775 M 4 2 0 "" NA10860,NA15510 nsv528100 4 184603397 184606614 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704640 S 2026 1 0 "" nsv291100 4 184633020 184633397 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309678 M 24 "" dgv330n21 4 184646168 184646776 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv522865,nsv520410 M 2026 0 2 "" nsv291830 4 184656247 184656247 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310408 M 24 "" nsv4630 4 184673106 184691500 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4800 S 9 0 1 "" NA19129 nsv4633 4 184703307 184738314 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv432 S 9 1 0 "" NA19240 nsv830165 4 184761411 184944721 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444116 S 95 0 1 "" nsv509951 4 184879501 184885501 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623969 S 4 0 1 "" NA18994 nsv527483 4 184900683 184901589 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703930 S 2026 0 1 "" nsv293696 4 184921638 184921638 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv312274 M 24 "" nsv508338 4 185003007 185056001 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618761 S 4 0 1 "" NA10860 nsv292013 4 185007974 185008063 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310591 M 24 "" nsv4634 4 185010206 185062690 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7133,nssv4801 M 9 0 2 "" NA12156,NA19129 nsv4635 4 185101828 185146680 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8041 S 9 0 1 "" NA12156 nsv292871 4 185130004 185130316 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311449 M 24 "" nsv290257 4 185153723 185153723 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308835 M 24 "" nsv292077 4 185153756 185153756 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310655 M 24 "" nsv4636 4 185158814 185171878 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv433 S 9 1 0 "" NA19240 nsv830166 4 185221107 185385345 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444117 S 95 1 0 "" nsv4637 4 185254033 185268983 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8044 S 9 1 0 "" NA12156 nsv521658 4 185353640 185417938 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698275 S 2026 0 1 "" nsv441932 4 185361161 185364340 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv830167 4 185461995 185684100 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444131,nssv1444130,nssv1444123,nssv1444120,nssv1444119,nssv1444122,nssv1444121,nssv1444124,nssv1444127,nssv1444125,nssv1444126,nssv1444128,nssv1444132 M 95 13 0 "" nsv10623 4 185531516 185547269 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14970,nssv14023,nssv13778,nssv12407,nssv12496,nssv13977,nssv13023,nssv12834,nssv12969,nssv12596,nssv14053,nssv12315,nssv12276,nssv12306,nssv12999,nssv11830,nssv12065,nssv12487,nssv12948,nssv13381,nssv12035,nssv12964,nssv13289,nssv12898,nssv14024,nssv14573,nssv12412,nssv12482,nssv14001,nssv12452,nssv13994,nssv11719,nssv11951,nssv12805,nssv12345,nssv12740,nssv13902,nssv11800,nssv11689 M 31 30 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10847,NA10863,NA11830,NA12155,NA12740,NA12802,NA12872,NA18502,NA18504,NA18517,NA18537,NA18552,NA18563,NA18564,NA18572,NA18853,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19144,NA19173,NA19221,NA19240 nsv818303 4 185535278 185540756 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416236,nssv1416237 M 112 0 2 "" NA10851,NA12057 nsv441933 4 185535741 185542572 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv1723e1 4 185535745 185542857 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv18569,esv1166 M 271 0 0 "" NA10851 nsv515626 4 185756732 185757210 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv664147,nssv660343 M 2026 0 2 "" nsv528892 4 185756732 185758606 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705576 S 2026 0 1 "" nsv830168 4 185922600 186097881 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444134,nssv1444133 M 95 0 2 "" nsv291514 4 185949172 185949307 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310092 M 24 "" nsv290083 4 185949271 185949388 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308661 M 24 "" nsv461859 4 186203826 186610697 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538197 S 1557 0 1 "" 1780862466_A nsv523168 4 186245532 186252592 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698880 S 2026 0 1 "" nsv291654 4 186258723 186258830 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310232 M 24 "" nsv528030 4 186413723 186413806 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704560 S 2026 0 1 "" dgv1724e1 4 186688274 186849845 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv22651,esv445 M 271 0 0 "" NA12752 nsv527026 4 186700578 186928629 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703401 S 2026 1 0 "" nsv4638 4 186726522 186761085 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3142 S 9 1 0 "" NA18555 nsv517035 4 186741464 186897192 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv692693,nssv693963,nssv680355,nssv679927,nssv679238,nssv654362,nssv653650,nssv703441,nssv687893,nssv668995,nssv655312,nssv675030 M 2026 3 9 "" nsv4639 4 186782034 186820476 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7134 S 9 0 1 "" NA12156 nsv508339 4 186797801 186830226 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619950 S 4 0 1 "" NA15510 nsv10624 4 186816420 186819670 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13932,nssv13411,nssv12375,nssv12800,nssv14007,nssv14054,nssv12835,nssv14603,nssv12864,nssv15000,nssv14031,nssv12928,nssv12994,nssv11749,nssv13319,nssv14113 M 31 16 0 Samples from several populations that are part of the HapMap project. "" NA10839,NA18502,NA18504,NA18517,NA18537,NA18572,NA18853,NA18860,NA18972,NA18975,NA18980,NA19132,NA19144,NA19173,NA19221,NA19240 nsv830169 4 186830213 187013312 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444135,nssv1444136 M 95 1 1 "" nsv521198 4 186933299 186934009 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697840 S 2026 0 1 "" nsv830171 4 186985262 187164420 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444137,nssv1444138 M 95 1 1 "" nsv4640 4 187035728 187069397 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv435 S 9 1 0 "" NA19240 nsv4641 4 187072327 187105772 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8045 S 9 1 0 "" NA12156 nsv507224 4 187106233 187112233 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622923 S 4 1 0 "" NA18994 nsv291687 4 187204606 187204606 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310265 M 24 "" nsv509952 4 187219966 187225966 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622077 S 4 0 1 "" NA10860 dgv683n27 4 187304375 187506653 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv461861,nsv461863,nsv461860 M 1557 3 0 "" HGDP00066,HGDP00191,HGDP00264 nsv292108 4 187330586 187330675 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310686 M 24 "" nsv461864 4 187381955 187632153 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538202 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00563 nsv830172 4 187387914 187543573 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444139 S 95 0 1 "" nsv290430 4 187388819 187388819 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309008 M 24 "" nsv508340 4 187434322 187512107 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622513,nssv619951 M 4 0 2 "" NA15510,NA18994 nsv524972 4 187454015 187454196 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700997 S 2026 0 1 "" nsv4642 4 187460331 187511563 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8046,nssv3310,nssv4802,nssv2497 M 9 0 4 "" NA12156,NA12878,NA18555,NA19129 esv33576 4 187465167 187465657 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99997 S 51 1 0 "" 22086 esv32667 4 187468713 187473762 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98693,essv100829,essv97968,essv95686,essv99960 M 51 5 0 "" 21606,21656,21837,21841,22086 esv32596 4 187473468 187474218 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97806 S 51 1 0 "" 21837 nsv4644 4 187481903 187515594 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3143 S 9 1 0 "" NA18555 dgv186n6 4 187535555 187536012 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv293301,nsv291910 M 24 "" nsv290547 4 187536029 187536087 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309125 M 24 "" nsv291453 4 187594280 187594280 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310031 M 24 "" dgv1725e1 4 187636479 187797491 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv7174,essv2451,essv6169,essv6336,esv413,essv23058,essv6694,essv24880,essv2877 M 271 0 0 "" NA07000,NA12812,NA18532,NA18547,NA18608,NA18609,NA18953,NA18999 nsv292413 4 187668536 187668741 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310991 M 24 "" dgv331n21 4 187674446 187688526 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv524340,nsv518037 M 2026 0 2 "" nsv4645 4 187707189 187741489 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9880,nssv436 M 9 2 0 "" NA18507,NA19240 nsv509028 4 187710706 187800281 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619391 S 4 1 0 "" NA10860 nsv10625 4 187728193 187733274 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12467,nssv13029,nssv11809,nssv13349,nssv15030,nssv13053,nssv14633,nssv12405,nssv12512,nssv12336,nssv13962,nssv11981,nssv13024,nssv14143,nssv13471,nssv12830,nssv12517,nssv12626,nssv12472,nssv12526,nssv14061,nssv14114,nssv12865,nssv12125,nssv11860,nssv14037,nssv12894,nssv13808 M 31 28 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10847,NA10863,NA11830,NA12155,NA12740,NA12802,NA12872,NA18502,NA18504,NA18517,NA18537,NA18552,NA18563,NA18572,NA18853,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19173,NA19221,NA19240 nsv10626 4 187741734 187744285 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12547 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA11830 nsv291244 4 187782289 187782338 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309822 M 24 "" nsv525719 4 187786446 187896186 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701882 S 2026 1 0 "" nsv4646 4 187832967 187867669 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv437 S 9 1 0 "" NA19240 nsv289366 4 187837225 187837225 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv307944 M 24 "" nsv290499 4 187906885 187906942 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309077 M 24 "" nsv291790 4 187906991 187907064 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310368 M 24 "" nsv525720 4 188167814 188801278 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701883 S 2026 1 0 "" dgv187n6 4 188170847 188171182 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv292007,nsv291075 M 24 "" nsv4647 4 188195740 188230392 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4803 S 9 0 1 "" NA19129 nsv818304 4 188212784 188223224 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416437 S 112 0 1 "" NA18517 nsv818305 4 188218875 188223224 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416924,nssv1416439 M 112 0 2 "" NA18515,NA19137 nsv517774 4 188218875 188226437 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv656366,nssv688209,nssv664263,nssv656410,nssv677156,nssv663953,nssv674910,nssv676119,nssv663987,nssv679283,nssv673879,nssv671721,nssv660599,nssv683900,nssv653192,nssv686559,nssv682066,nssv658335,nssv670513,nssv671650 M 2026 0 20 "" nsv508341 4 188224288 188271142 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618762,nssv617505,nssv622514 M 4 0 3 "" CHM,NA10860,NA18994 nsv523635 4 188226437 190175635 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699435 S 2026 1 0 "" esv34733 4 188232341 188253314 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6979307,essv6979306 M 771 1 0 "" NA18524 nsv441934 4 188237342 188253652 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv4648 4 188238789 188276491 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2498,nssv9881,nssv3311,nssv438,nssv7135,nssv4804 M 9 0 6 "" NA12156,NA12878,NA18507,NA18555,NA19129,NA19240 esv34947 4 188240984 188253314 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6979478,essv6979477 M 771 1 0 "" NA18562 nsv264 4 188250819 188282059 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv264 S 1 1 0 "" NA15510 nsv4649 4 188250819 188282059 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv11095 S 9 1 0 "" NA15510 nsv10627 4 188254341 188280010 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12860,nssv14663,nssv14121,nssv12924,nssv11890,nssv13379,nssv13059,nssv12465,nssv13992,nssv14144,nssv12958,nssv12502,nssv13113,nssv12895,nssv14173,nssv12656,nssv12497,nssv12542,nssv12556,nssv13054,nssv14067,nssv11839,nssv12577 M 31 21 2 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA11830,NA12740,NA12802,NA18502,NA18504,NA18517,NA18537,NA18552,NA18563,NA18572,NA18853,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19144,NA19173 nsv290249 4 188254469 188254469 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308827 M 24 "" nsv292573 4 188260212 188261557 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311151 M 24 "" nsv292574 4 188261965 188262196 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311152 M 24 "" esv32613 4 188353092 189810394 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97904 S 51 1 0 "" 21837 esv2752041 4 188415169 189396614 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6982630,essv6986220,essv6986219,essv6982632,essv6982631,essv6988561 M 771 1 0 "" BEC_573 nsv509953 4 188428140 188434140 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618195 S 4 0 1 "" CHM nsv4650 4 188464541 188476867 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8047 S 9 0 1 "" NA12156 nsv290875 4 188511044 188511259 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309453 M 24 "" nsv4651 4 188543442 188576947 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3312 S 9 1 0 "" NA12878 nsv4652 4 188578615 188610223 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4805 S 9 1 0 "" NA19129 nsv519308 4 188836307 189262569 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv672634,nssv684987,nssv655313,nssv663563,nssv657621,nssv687894,nssv662173,nssv679928 M 2026 6 2 "" nsv291744 4 188969477 188969477 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310322 M 24 "" nsv10629 4 189020755 189439726 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12495,nssv12527 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18537,NA18563 nsv461870 4 189073244 189596356 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538203 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01033 nsv461871 4 189161987 189392085 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538204 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00734 nsv292618 4 189188220 189193046 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311196 M 24 "" nsv7367 4 189214488 189294134 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9654,nssv9655,nssv7136 M 9 0 0 "" NA12156,NA18507 dgv332n21 4 189262569 189437363 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv518420,nsv522793 M 2026 0 2 "" nsv830173 4 189274621 189499123 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444142,nssv1444141 M 95 2 0 "" nsv519300 4 189296589 189509257 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv663679,nssv697630,nssv656925,nssv655244,nssv696505,nssv696256,nssv699576,nssv699315,nssv680541 M 2026 2 7 "" nsv509029 4 189427271 189487104 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620801 S 4 1 0 "" NA15510 nsv4653 4 189428312 189473064 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2499 S 9 0 1 "" NA18555 nsv4655 4 189430038 189465125 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8048,nssv439 M 9 2 0 "" NA12156,NA19240 dgv1726e1 4 189459436 189638677 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv609,essv2175,essv3556 M 271 0 0 "" NA18960,NA18965 dgv333n21 4 189490380 189883387 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv523625,nsv521081 M 2026 2 0 "" nsv4656 4 189527452 189539578 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4808 S 9 1 0 "" NA19129 nsv507225 4 189531534 189537534 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621776 S 4 1 0 "" NA10860 nsv520727 4 189538747 189571841 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697578 S 2026 1 0 "" essv2748 4 189546195 189637395 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18965 nsv818306 4 189550800 189622629 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417467,nssv1417489 M 112 0 2 "" NA18960,NA18965 nsv461872 4 189563288 190065532 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538205 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00563 nsv293045 4 189565307 189565906 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311623 M 24 "" nsv290238 4 189565509 189566108 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308816 M 24 "" essv3906 4 189590885 189605486 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18960 essv1075 4 189590885 189635957 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18990 nsv527972 4 189592745 189593305 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704485 S 2026 0 1 "" nsv437952 4 189596356 189608443 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv468702,nssv468701 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA18960,NA18965 nsv528541 4 189637395 189965691 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705153 S 2026 1 0 "" nsv291922 4 189669325 189669325 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310500 M 24 "" nsv292969 4 189691579 189691636 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311547 M 24 "" nsv4657 4 189696883 189727727 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4809 S 9 1 0 "" NA19129 nsv4658 4 189716801 189762650 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7137 S 9 0 1 "" NA12156 nsv527937 4 189719911 189721057 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704445 S 2026 0 1 "" nsv508342 4 189726169 189762499 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622515 S 4 0 1 "" NA18994 dgv1727e1 4 189753545 189837970 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv434,essv16836 M 271 0 0 "" NA19205 nsv471626 4 189763440 190167247 CNV Gain+Loss Sharp et al 2005 15918152 BAC_aCGH,FISH Eichler Segmental Duplication BAC array nssv551041,nssv551039,nssv551038,nssv551040,nssv549610,nssv551042,nssv551043 M 48 1 5 "" JK1688,NA10496,NA11323,NA15726,NA15732,NA17015 nsv10630 4 189770482 189777915 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13119 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA12740 nsv4659 4 189781510 189813673 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7138,nssv11096,nssv3313 M 9 3 0 "" NA12156,NA12878,NA15510 nsv509030 4 189785979 189822809 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618031,nssv623423,nssv620802 M 4 3 0 "" CHM,NA15510,NA18994 nsv266 4 189799084 189813673 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv266 S 1 1 0 "" NA15510 nsv10631 4 189799180 189808060 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12954,nssv12607,nssv14022,nssv12525,nssv12011,nssv11920,nssv13501,nssv12925,nssv12586,nssv13409,nssv12890,nssv14151,nssv11869 M 31 1 12 Samples from several populations that are part of the HapMap project. "" NA11830,NA12802,NA12872,NA18502,NA18537,NA18552,NA18572,NA18853,NA18860,NA18975,NA18980,NA19173,NA19240 nsv10632 4 189811777 189814525 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13149,nssv12366,nssv14693,nssv12955 M 31 0 4 Samples from several populations that are part of the HapMap project. "" NA10863,NA12740,NA18972,NA18980 dgv107n17 4 189811978 189815150 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv436976,nsv436975 M 60 0 2 "" NA10846,NA12801 nsv520778 4 189863883 189946690 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697604 S 2026 1 0 "" nsv830174 4 190090319 190287329 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444143 S 95 0 1 "" nsv527292 4 190110879 190112937 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703707 S 2026 0 1 "" nsv291714 4 190160758 190160839 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310292 M 24 "" nsv291631 4 190165861 190165861 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310209 M 24 "" dgv190n6 4 190168389 190168722 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv292873,nsv290562 M 24 "" nsv291678 4 190201436 190201436 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310256 M 24 "" nsv830175 4 190223271 190413468 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444144 S 95 1 0 "" nsv509031 4 190315007 190340540 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618032 S 4 1 0 "" CHM nsv830176 4 190317352 190525794 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444145 S 95 0 1 "" nsv461877 4 190322057 190381777 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538207 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01245 nsv528408 4 190344819 190365111 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705000 S 2026 0 1 "" nsv292210 4 190344826 190345179 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310788 M 24 "" nsv293673 4 190348461 190348541 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv312251 M 24 "" nsv4660 4 190389783 190401171 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3144 S 9 1 0 "" NA18555 dgv1728e1 4 190398953 190641305 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv243,essv19533 M 271 0 0 "" NA12864 nsv4661 4 190407376 190473672 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv440,nssv10433,nssv3314,nssv4810,nssv7139,nssv2500 M 9 0 6 "" NA12156,NA12878,NA18555,NA18956,NA19129,NA19240 nsv517295 4 190409440 191266852 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv669323,nssv654294,nssv702062,nssv692174,nssv696815,nssv696187,nssv701324,nssv682684,nssv691739,nssv674417,nssv662363,nssv654231,nssv694377,nssv670786,nssv700086,nssv660215,nssv688891,nssv702258,nssv680003,nssv703739,nssv682745,nssv682812,nssv685382 M 2026 16 7 "" nsv508343 4 190425074 190454042 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617506,nssv618763,nssv622516 M 4 0 3 "" CHM,NA10860,NA18994 nsv291470 4 190426244 190426383 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310048 M 24 "" nsv293415 4 190433148 190439421 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311993 M 24 "" nsv289995 4 190480595 190480754 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308573 M 24 "" nsv293648 4 190480734 190481432 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv312226 M 24 "" nsv10633 4 190504850 190507994 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14174 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18517 nsv10634 4 190526573 190534663 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14723,nssv15060,nssv12984,nssv12978,nssv12557,nssv13838,nssv13143,nssv14204,nssv12532,nssv12572,nssv12555,nssv14181,nssv12985,nssv12616,nssv12396,nssv11950,nssv14052,nssv13469,nssv13179,nssv12920,nssv14127,nssv11899,nssv12988,nssv14203,nssv12686,nssv13531,nssv12155,nssv12041,nssv13114 M 31 0 29 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10847,NA10863,NA12155,NA12740,NA12802,NA12872,NA18502,NA18504,NA18517,NA18537,NA18552,NA18563,NA18564,NA18572,NA18853,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19144,NA19173,NA19221,NA19240 nsv433368 4 190529333 190584437 CNV Gain Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463249 S 9 1 0 Samples from several populations that are part of the HapMap project. "" NA12156 nsv4662 4 190537154 190592073 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2501,nssv10434,nssv4811,nssv7140 M 9 0 4 "" NA12156,NA18555,NA18956,NA19129 nsv10635 4 190568557 190575859 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14813,nssv13173 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA07048,NA18972 nsv442933 4 190570267 190574413 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv293355 4 190574191 190574191 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311933 M 24 "" nsv509032 4 190583860 190607952 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619392 S 4 1 0 "" NA10860 dgv684n27 4 190606565 190692627 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv461880,nsv461879 M 1557 2 0 "" HGDP00912,HGDP01283 nsv461882 4 190606565 191131631 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538210 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00057 nsv292398 4 190652137 190652137 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310976 M 24 "" nsv469768 4 190658159 190806578 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649789 M 265 0 0 Samples from several populations that are part of the HapMap project. "" dgv1729e1 4 190658160 191140586 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv567,essv5721 M 271 0 0 "" NA18593 nsv292091 4 190666568 190666886 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310669 M 24 "" nsv291067 4 190676765 190676856 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309645 M 24 "" nsv461883 4 190682451 190842272 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538211 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01033 nsv292388 4 190704734 190704785 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310966 M 24 "" nsv293269 4 190704734 190704967 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311847 M 24 "" nsv830177 4 190724383 190877528 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444148,nssv1444147,nssv1444146 M 95 1 2 "" nsv290372 4 190756968 190757535 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308950 M 24 "" nsv10636 4 190765430 190773593 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14233,nssv13499 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18504,NA19173 nsv291037 4 190768330 190773077 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309615 M 24 "" dgv1730e1 4 190784196 191070245 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv4497,essv836,essv24483,essv20667,essv3231,essv21259,essv22296,essv641,essv8217,essv14497,essv1608,essv22469,essv273,essv21855,essv21796,essv10074,essv16966,essv2970,essv8423,essv2809,essv11970,essv1521,essv2581,essv20289,essv14887,essv12364,essv3458,essv7122,essv18095,essv384,essv6149,essv17745,essv3116,essv17582,essv15418,essv20768,essv19751,essv4560,essv2469,essv575,essv23227,essv16555,essv10547,essv5124,essv4205,essv2494,essv3714,essv24897,essv2077,essv1357,essv20185,essv3151,essv11188,essv16158,essv14636,essv13022,essv9892,essv15247,essv9607,essv12560,essv21411,essv19643,essv12233,essv1462,essv8767,essv6750,essv13161,essv19669,essv17945,essv13716,essv5933,essv6323,essv22125,essv9830,essv24744,essv15093,essv4173,essv11933,essv17645,essv22883,essv6667,essv14400,essv24830,essv18382,essv14138,essv16430,essv20398,essv7310,essv21160,essv8878,essv11008,essv15719,essv5548,essv7204,essv9049,essv22647,essv18628,essv16637,essv223,essv13628,essv24244,essv5027,essv17705,essv4904,essv8648,essv14266,essv74,essv18454,essv18841,essv12420,essv1022,essv6014,essv14743,essv8347,essv7773,essv6914,essv8955,essv2665,essv21227,essv4298,essv23358,essv23970,essv21966,essv4054,essv11822,essv23820,essv6254,essv10748,essv4980,essv19458,essv23477,essv20911,essv9336,essv14415,essv24531,essv13904,essv907,essv11490,essv19282,essv17610,essv10695,essv5218,essv5243,essv23180,essv22495,essv10932,essv17301,essv4360,essv11459,essv5449,essv23544,essv19978,essv482,essv10125,essv4635,essv24557,essv9154,essv22048,essv4685,essv4812,essv23913,essv24974,essv14105,essv19109,essv15313,essv21064,essv18160,essv6632,essv2211,essv21724,essv16883,essv15010,essv10884,essv1781,essv16803,essv19177,essv15636,essv9171,essv9694,essv21542,essv17044,essv16263,essv12765,essv23083,essv11285,essv17124,essv22748,essv2305,essv7268,essv7585,essv18701,essv18326,essv24702,essv22387,essv3823,essv22833,essv3412,essv21333,essv23124,essv1258,essv21456,essv5370,essv12793,essv13742,essv20610,essv7376,essv1182,essv18991,essv7047,essv6842,essv12635,essv1872,essv2881,essv15987,essv1922,essv10435,essv13047,essv23618,essv6960,essv3737,essv16318,essv15607,essv15872,essv1097,essv3529,essv23436,essv8296,essv2255,essv7732,essv17421,essv24421,essv11625,essv143,essv15540,essv3297,essv22179,essv4005,essv10229,essv5798,essv20142,essv10261,essv20092 M 271 0 0 "" NA06985,NA06991,NA06993,NA06994,NA07000,NA07019,NA07029,NA07034,NA07048,NA07055,NA07056,NA07345,NA10830,NA10831,NA10835,NA10838,NA10839,NA10846,NA10854,NA10855,NA10856,NA10857,NA10860,NA11829,NA11830,NA11831,NA11832,NA11839,NA11840,NA11881,NA11882,NA11992,NA11993,NA11995,NA12003,NA12004,NA12005,NA12006,NA12043,NA12044,NA12056,NA12144,NA12145,NA12146,NA12154,NA12155,NA12156,NA12234,NA12239,NA12248,NA12249,NA12264,NA12707,NA12716,NA12717,NA12740,NA12750,NA12751,NA12752,NA12753,NA12760,NA12761,NA12762,NA12763,NA12801,NA12802,NA12812,NA12813,NA12814,NA12815,NA12865,NA12872,NA12873,NA12874,NA12875,NA12878,NA12891,NA12892,NA18500,NA18501,NA18502,NA18505,NA18506,NA18507,NA18508,NA18515,NA18516,NA18517,NA18521,NA18522,NA18523,NA18524,NA18526,NA18529,NA18532,NA18537,NA18542,NA18545,NA18547,NA18550,NA18552,NA18555,NA18561,NA18562,NA18563,NA18566,NA18570,NA18571,NA18573,NA18576,NA18577,NA18579,NA18582,NA18592,NA18594,NA18603,NA18605,NA18608,NA18609,NA18611,NA18612,NA18620,NA18621,NA18622,NA18623,NA18624,NA18632,NA18633,NA18635,NA18636,NA18637,NA18852,NA18853,NA18854,NA18855,NA18856,NA18857,NA18858,NA18859,NA18860,NA18861,NA18862,NA18863,NA18870,NA18871,NA18872,NA18912,NA18913,NA18914,NA18940,NA18942,NA18943,NA18944,NA18945,NA18947,NA18948,NA18949,NA18951,NA18952,NA18953,NA18959,NA18960,NA18961,NA18964,NA18965,NA18966,NA18967,NA18968,NA18969,NA18970,NA18971,NA18972,NA18973,NA18974,NA18975,NA18976,NA18978,NA18980,NA18981,NA18987,NA18990,NA18991,NA18992,NA18995,NA18997,NA18998,NA18999,NA19000,NA19003,NA19005,NA19007,NA19012,NA19092,NA19093,NA19094,NA19098,NA19099,NA19100,NA19101,NA19102,NA19103,NA19116,NA19119,NA19120,NA19127,NA19128,NA19129,NA19130,NA19131,NA19132,NA19137,NA19138,NA19139,NA19140,NA19141,NA19142,NA19143,NA19144,NA19145,NA19152,NA19153,NA19154,NA19159,NA19161,NA19171,NA19172,NA19173,NA19193,NA19194,NA19200,NA19201,NA19202,NA19203,NA19204,NA19205,NA19209,NA19210,NA19211,NA19223,NA19238,NA19239,NA19240 nsv10637 4 190786744 190788658 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14234 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18517 nsv291764 4 190792644 190792709 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310342 M 24 "" nsv292211 4 190792857 190792955 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310789 M 24 "" nsv830178 4 190811548 190949799 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444150,nssv1444149 M 95 0 2 "" nsv4663 4 190823936 190876588 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3315,nssv4812,nssv441,nssv3145 M 9 4 0 "" NA12878,NA18555,NA19129,NA19240 nsv509033 4 190842034 190856131 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619393,nssv620803,nssv623424 M 4 3 0 "" NA10860,NA15510,NA18994 nsv291125 4 190842198 190842198 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309703 M 24 "" nsv10638 4 190845056 191060132 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12602,nssv12746,nssv13015,nssv13203,nssv14211,nssv13239,nssv12950,nssv13018,nssv14264,nssv12716,nssv13561,nssv13209,nssv12637,nssv13008,nssv12562,nssv14843,nssv13014,nssv13868 M 31 16 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA11830,NA12155,NA12740,NA18517,NA18564,NA18853,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19144,NA19240 nsv289875 4 190855587 190857066 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308453 M 24 "" dgv1731e1 4 190866051 191070245 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv12475,essv25125,essv9268,essv24046 M 271 0 0 "" NA10856,NA10859,NA19137,NA19207 nsv293113 4 190887932 190888055 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311691 M 24 "" nsv293769 4 190888040 190888120 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv312347 M 24 "" nsv292731 4 190895940 190895940 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311309 M 24 "" nsv293470 4 190895980 190896088 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv312048 M 24 "" essv20758 4 190896474 190974024 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA07357 nsv291004 4 190913535 190913602 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309582 M 24 "" dgv1732e1 4 190914437 191078580 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv203,essv15955,essv19734,essv15445,essv19044,essv19061,essv17377,essv13113,essv14030,essv2421 M 271 0 0 "" NA07034,NA10859,NA11830,NA18855,NA18859,NA18862,NA18951,NA18994,NA19142,NA19206 esv33187 4 190915628 191053827 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98496 S 51 0 1 "" 22352 esv2752042 4 190917963 191150793 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6985793,essv6985794,essv6990143 M 771 0 1 "" SPC_50 essv7873 4 190941257 190977342 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19140 nsv290315 4 190941716 190942219 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308893 M 24 "" nsv830179 4 190955307 191141497 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444154,nssv1444153,nssv1444152 M 95 2 1 "" nsv4664 4 190967206 190992496 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3316,nssv8050 M 9 2 0 "" NA12156,NA12878 essv18895 4 190967344 191078580 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12717 nsv289856 4 190973375 190973375 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308434 M 24 "" nsv290947 4 190973543 190973543 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309525 M 24 "" nsv509034 4 190980694 191000491 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623425,nssv619394 M 4 2 0 "" NA10860,NA18994 nsv292435 4 190981426 190981696 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311013 M 24 "" nsv293618 4 190981475 190981524 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv312196 M 24 "" nsv292102 4 190981731 190981731 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310680 M 24 "" nsv291839 4 190982137 190985449 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310417 M 24 "" nsv293302 4 190982344 190982396 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311880 M 24 "" nsv290941 4 190996624 190996624 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309519 M 24 "" nsv289777 4 190999778 191000124 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308355 M 24 "" nsv289863 4 191031477 191031546 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308441 M 24 "" nsv289555 4 191031477 191031581 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308133 M 24 "" nsv289391 4 191031477 191032028 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv307969 M 24 "" nsv293594 4 191031911 191031979 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv312172 M 24 "" essv12 4 191053255 191140586 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18945 esv34388 4 191053255 191306043 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6980050,essv6980051,essv6980052,essv6980053 M 771 1 0 "" NA18945 nsv293474 4 191056277 191058282 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv312052 M 24 "" nsv289645 4 191057073 191058296 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308223 M 24 "" nsv292146 4 191065724 191065724 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv310724 M 24 "" esv33617 4 191078205 191088769 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98719 S 51 1 0 "" 21606 nsv4666 4 191095710 191118383 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8051 S 9 0 1 "" NA12156 nsv290470 4 191116567 191116851 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv309048 M 24 "" nsv289486 4 191116736 191117020 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv308064 M 24 "" nsv509037 4 191128931 191157951 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619395,nssv623426,nssv620804,nssv618033 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv4667 4 191134762 191157695 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4813,nssv442,nssv7141,nssv3317 M 9 4 0 "" NA12156,NA12878,NA19129,NA19240 nsv10640 4 191142135 191143977 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14112,nssv14873,nssv12667,nssv14241,nssv14294,nssv12456,nssv15090,nssv11980,nssv13898 M 31 4 5 Samples from several populations that are part of the HapMap project. "" NA10863,NA11830,NA12155,NA12802,NA18502,NA18517,NA18860,NA18972,NA19221 nsv292976 4 191142315 191142951 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv311554 M 24 "" nsv830180 4 191168723 191256673 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444156,nssv1444157,nssv1444155 M 95 1 2 "" nsv830182 4 191168723 191275929 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444158 S 95 0 1 "" nsv10641 4 191175736 191392513 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12585,nssv14142,nssv12486,nssv13045 M 31 0 4 Samples from several populations that are part of the HapMap project. "" NA10863,NA18502,NA18537,NA18980 nsv509038 4 191176116 191195086 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623427,nssv623428 M 4 1 0 "" NA18994 nsv509039 4 191261644 191293026 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618034,nssv619396 M 4 2 0 "" CHM,NA10860 nsv442934 4 191278521 191284475 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv471487 4 191300364 191397704 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv547806,nssv547807,nssv547808 M 3 "" nsv482089 4 191320672 191323561 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558450 S 1 1 0 "" KB1 essv22552 5 70263 392087 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA07348 dgv1733e1 5 70263 648955 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv17816,esv402 M 271 0 0 "" NA10831 nsv461885 5 80564 171406 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538212 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00099 esv2752083 5 81949 399636 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6985508,essv6981184,essv6981182,essv6981183 M 771 1 0 "" BEC_361 nsv10642 5 104036 105999 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12615,nssv14324,nssv13233 M 31 3 0 Samples from several populations that are part of the HapMap project. "" NA07048,NA18517,NA18537 nsv10643 5 112264 172675 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12071,nssv14172,nssv13044,nssv13591,nssv13048,nssv14202 M 31 5 1 Samples from several populations that are part of the HapMap project. "" NA12872,NA18502,NA18975,NA19144,NA19240 nsv509040 5 112364 139950 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618035 S 4 1 0 "" CHM nsv441935 5 121675 169111 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv520135 5 134437 171406 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697242 S 2026 1 0 "" nsv4671 5 134438 161922 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4814 S 9 1 0 "" NA19129 dgv1734e1 5 146896 392087 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv13129,essv8103,essv9221,essv18733,essv19259,essv19956,essv16256,essv17940,essv22374,essv2078 M 271 0 0 "" NA10838,NA12003,NA12813,NA12874,NA12875,NA18949,NA19102,NA19128,NA19161,NA19206 nsv328998 5 163602 163602 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347576 M 24 "" nsv515806 5 194659 245757 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv676878,nssv661286,nssv664833,nssv690272,nssv683174,nssv682967,nssv667296,nssv682242 M 2026 0 8 "" nsv518607 5 194659 359032 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696054 S 2026 1 0 "" nsv523382 5 196197 317036 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699131 S 2026 0 1 "" nsv461886 5 227106 245757 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538213 S 1557 0 1 "" NINDS_71 nsv327306 5 228682 228739 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv345884 M 24 "" nsv329414 5 229151 229378 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347992 M 24 "" nsv509954 5 234749 240749 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621256,nssv618196 M 4 0 2 "" CHM,NA15510 nsv329761 5 253954 254067 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv348339 M 24 "" nsv10644 5 261032 290867 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14232,nssv14271,nssv12646,nssv13075,nssv13263,nssv13651,nssv13928,nssv12632,nssv13621,nssv12697,nssv13078,nssv14157,nssv15150,nssv12587 M 31 10 4 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA11830,NA12155,NA18502,NA18552,NA18563,NA18860,NA18980,NA19132,NA19144,NA19221,NA19240 nsv10645 5 308486 323435 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13269,nssv14354,nssv14263,nssv14187 M 31 0 4 Samples from several populations that are part of the HapMap project. "" NA12740,NA18504,NA18517,NA19132 nsv328175 5 311945 312036 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346753 M 24 "" nsv461887 5 352621 491564 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538214 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00045 nsv329327 5 360286 360393 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347905 M 24 "" nsv509041 5 367510 491403 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619397,nssv623429,nssv620805 M 4 3 0 "" NA10860,NA15510,NA18994 nsv830183 5 402352 555524 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444163,nssv1444160,nssv1444159,nssv1444164,nssv1444167,nssv1444166,nssv1444165,nssv1444161 M 95 1 7 "" nsv4672 5 404322 405757 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3318 S 9 1 0 "" NA12878 nsv327296 5 429619 429619 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv345874 M 24 "" nsv830184 5 431268 504867 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444168,nssv1444169 M 95 2 0 "" esv2752071 5 431413 752190 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6985627,essv6981650,essv6981649 M 771 1 0 "" BEC_311 nsv526648 5 435369 439014 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702974 S 2026 1 0 "" nsv10646 5 449788 452153 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14384 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18517 nsv516539 5 460230 464047 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv688667,nssv701351,nssv682498,nssv685213,nssv669566,nssv672639,nssv692434,nssv669940,nssv675739,nssv678480,nssv668998,nssv674755 M 2026 11 1 "" nsv4673 5 467285 502564 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3319 S 9 1 0 "" NA12878 nsv329656 5 473941 473941 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv348234 M 24 "" nsv461889 5 482989 651224 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538215 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00428 nsv327676 5 489297 489297 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346254 M 24 "" nsv327598 5 489388 489388 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346176 M 24 "" nsv461890 5 491564 592310 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538216 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00338 nsv4674 5 508036 541214 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8052 S 9 1 0 "" NA12156 nsv527666 5 510261 543237 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704141 S 2026 0 1 "" nsv10647 5 519662 525046 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12131,nssv12806,nssv12645,nssv12010,nssv12617,nssv11929,nssv12516,nssv13135,nssv13038,nssv12980,nssv12727,nssv13293,nssv13144,nssv14903,nssv14301,nssv15180,nssv13681,nssv13074,nssv12592 M 31 19 0 Samples from several populations that are part of the HapMap project. "" NA07048,NA10839,NA10863,NA11830,NA12802,NA12872,NA18537,NA18563,NA18564,NA18572,NA18853,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19221,NA19240 nsv521554 5 528104 548377 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698169 S 2026 0 1 "" nsv519778 5 529969 543237 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv658512,nssv691336 M 2026 0 2 "" nsv509042 5 536948 773488 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619398,nssv623431,nssv623430,nssv619399 M 4 2 0 "" NA10860,NA18994 nsv10648 5 541111 542777 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13165 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18980 nsv328215 5 543312 543312 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346793 M 24 "" nsv329001 5 545298 545357 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347579 M 24 "" nsv10649 5 548335 550219 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12546 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA10863 nsv10651 5 576202 577994 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14444 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18517 nsv830185 5 592337 709215 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444175,nssv1444174,nssv1444172,nssv1444171,nssv1444170,nssv1444177,nssv1444176,nssv1444179,nssv1444178 M 95 9 0 "" nsv327889 5 607558 607610 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346467 M 24 "" nsv329572 5 610663 610819 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv348150 M 24 "" nsv520138 5 613923 659384 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697243 S 2026 1 0 "" dgv685n27 5 613923 671586 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv461892,nsv461891 M 1557 2 0 "" HGDP00011,HGDP00187 nsv510933 5 632123 892273 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624295,nssv621576 M 4 0 0 "" NA15510,NA18994 nsv329887 5 645966 646030 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv348465 M 24 "" nsv328518 5 646018 646082 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347096 M 24 "" nsv461893 5 647083 678670 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538219 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01019 nsv461894 5 647083 738748 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538220 S 1557 1 0 "" NINDS_256 nsv525620 5 647083 869095 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701766 S 2026 1 0 "" dgv5n29 5 662946 873509 CNV Gain Locke et al 2006 16826518 BAC_aCGH nsv469551,nsv469572,nsv469866 M 265 248 0 "" nsv471627 5 662947 879520 CNV Gain+Loss Sharp et al 2005 15918152 BAC_aCGH,FISH Eichler Segmental Duplication BAC array nssv551075,nssv551036,nssv551068,nssv549436,nssv549129,nssv551079,nssv551066,nssv551029,nssv549441,nssv551017,nssv551037,nssv549128,nssv551014,nssv551020,nssv551086,nssv551028,nssv549135,nssv549452,nssv551080,nssv551024,nssv549127,nssv549443,nssv549126,nssv549435,nssv551027,nssv551031,nssv549450,nssv551067,nssv551083,nssv551088,nssv551023,nssv549453,nssv549434,nssv551016,nssv549447,nssv551072,nssv551022,nssv551082,nssv551032,nssv549131,nssv549451,nssv551019,nssv551071,nssv551074,nssv551087,nssv549456,nssv551081,nssv549142,nssv549130,nssv551033,nssv551085,nssv551077,nssv549134,nssv549437,nssv549455,nssv551073,nssv549141,nssv551030,nssv549448,nssv551015,nssv549442,nssv551069,nssv551078,nssv551089,nssv549439,nssv551021,nssv549132,nssv549438,nssv551034,nssv551018,nssv549454,nssv551025,nssv551026,nssv551076,nssv549140,nssv551084,nssv549138,nssv551035,nssv549125,nssv549449,nssv549139,nssv549136,nssv549446,nssv549445,nssv549444,nssv551070,nssv549440,nssv549137,nssv549133 M 48 23 6 "" JK1051,JK1058,JK1061,JK1688,JK776,NA10471,NA10472,NA10473,NA10492,NA10493,NA10494,NA10495,NA10496,NA10967,NA10969,NA10976,NA10979,NA11323,NA11521,NA15724,NA15727,NA15728,NA15729,NA15733,NA17014,NA17020,NA17052,NA17058,P86GA dgv1735e1 5 673163 937439 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv14406,essv3286,essv848,essv1333,essv10702,essv3152,essv15851,essv1880,essv6847,essv678,essv271,essv3054,essv17066,essv10186,essv20245,essv4472,essv3889,essv12888,essv18438,essv11602,essv1735,essv8447,essv21641,essv8874,essv14852,essv6812,essv24079,essv22123,essv15278,essv19613,essv17759,essv4565,essv6586,essv1286,essv9487,essv7778,essv16111,essv7612,essv2514,essv13192,essv8287,essv9041,essv24887,essv8110,essv11351,essv982,essv8937,essv14501,essv22546,essv14633,essv1429,essv12571,essv9203,essv15582,essv15958,essv18391,essv336,essv21438,essv9529,essv16977,essv5577,essv10102,essv4762,essv22987,essv8710,essv11281,essv22474,essv5437,essv14459,essv9506,essv6179,essv18835,essv8597,essv5736,essv20090,essv2774,essv15031,essv14091,essv20966,essv16707,essv13058,essv24530,essv9323,essv13935,essv9428,essv10554,essv13818,essv8494,essv4386,essv4634,essv10641,essv13300,essv17395,essv11463,essv11670,essv17344,essv16287,essv17223,essv11440,essv2768,essv13026,essv11542,essv14153,essv25016,essv7809,essv23928,essv21123,essv15311,essv15638,essv9756,essv12325,essv14992,essv14814,essv11801,essv8694,essv14355,essv6028,essv23519,essv18249,essv743,essv18703,essv7382,essv4283,essv5153,essv14848,essv20559,essv20651,essv1402,essv1200,essv9916,essv8757,essv14712,essv2860,essv16012,essv12457,essv19016,essv23657,essv455,essv11921,essv1100,essv8546,essv11744,essv15181,essv2648,essv17450,essv150,essv1029,essv10286,essv11164 M 271 0 0 "" NA06993,NA07000,NA07048,NA07056,NA07348,NA07357,NA10831,NA10839,NA10846,NA10857,NA10859,NA10863,NA11831,NA12005,NA12043,NA12144,NA12155,NA12249,NA12717,NA12751,NA12761,NA12801,NA12802,NA12814,NA12815,NA12874,NA12892,NA18501,NA18502,NA18503,NA18504,NA18506,NA18507,NA18508,NA18516,NA18521,NA18522,NA18524,NA18529,NA18532,NA18542,NA18545,NA18552,NA18558,NA18564,NA18571,NA18573,NA18579,NA18593,NA18594,NA18603,NA18620,NA18621,NA18623,NA18852,NA18853,NA18854,NA18855,NA18856,NA18857,NA18859,NA18861,NA18862,NA18863,NA18870,NA18912,NA18944,NA18951,NA18952,NA18953,NA18964,NA18967,NA18968,NA18971,NA18972,NA18973,NA18975,NA18976,NA18978,NA18981,NA18987,NA18994,NA18995,NA18997,NA19000,NA19003,NA19005,NA19007,NA19012,NA19092,NA19093,NA19094,NA19098,NA19100,NA19102,NA19103,NA19119,NA19128,NA19129,NA19130,NA19132,NA19137,NA19138,NA19140,NA19142,NA19144,NA19145,NA19154,NA19159,NA19161,NA19172,NA19173,NA19194,NA19200,NA19201,NA19202,NA19204,NA19206,NA19207,NA19208,NA19211,NA19223,NA19239,NA19240 dgv1736e1 5 673163 1214476 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv13720,essv6700,essv17509,essv10035,essv16463,essv7189,essv24376,essv21868,essv12181,esv872,essv9127,essv17162 M 271 0 0 "" NA11839,NA12707,NA12762,NA18547,NA18608,NA18860,NA19099,NA19101,NA19119,NA19139,NA19171 nsv327941 5 681798 681999 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346519 M 24 "" nsv329867 5 681868 681868 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv348445 M 24 "" nsv328511 5 682086 682153 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347089 M 24 "" nsv10652 5 682483 687162 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12161,nssv14331,nssv13138 M 31 0 3 Samples from several populations that are part of the HapMap project. "" NA12872,NA18860,NA19144 essv13335 5 697552 796547 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18500 dgv1737e1 5 697552 876715 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv24547,essv12942,essv20496,essv3927,essv25138,essv2395,essv22284,essv24193,essv12124,essv16625,essv12043,essv7684,essv3615,essv15442 M 271 0 0 "" NA07056,NA11831,NA11839,NA12762,NA12874,NA18620,NA18966,NA18970,NA18976,NA19102,NA19116,NA19173,NA19206,NA19208 nsv10653 5 700923 704673 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14933 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18972 nsv327962 5 701482 701743 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346540 M 24 "" nsv328227 5 702934 702992 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346805 M 24 "" nsv329670 5 703296 703363 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv348248 M 24 "" nsv4675 5 711894 897746 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv11097,nssv2503,nssv10436,nssv447 M 9 0 4 "" NA15510,NA18555,NA18956,NA19240 dgv195e55 5 712605 876820 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv2752075,esv34475,esv34644,esv34972,esv2752077,esv2752079 M 771 6 0 "" BEC_310,BEC_329,BEC_408,NA10857,NA18522,NA18995 nsv329077 5 715977 716069 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347655 M 24 "" nsv329408 5 716249 716341 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347986 M 24 "" nsv328023 5 720890 721177 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346601 M 24 "" nsv519836 5 723745 738748 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698300,nssv658982,nssv692386 M 2026 0 3 "" nsv818307 5 723745 738748 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417277 S 112 0 1 "" NA18608 esv33266 5 728076 913495 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97537,essv93926,essv100899,essv100910,essv101084,essv95178,essv101302,essv97075,essv97816,essv97795,essv95556,essv97333,essv101651,essv101706,essv95837,essv94579,essv92911,essv96125,essv96145,essv96710,essv97173,essv97283,essv98646,essv93587,essv99685,essv99614,essv92598,essv98005,essv96535,essv96538,essv100223,essv98410,essv96288,essv94273 M 51 8 20 "" 21616,21634,21656,21693,21721,21805,21817,21837,21847,21879,21909,21911,21932,21939,22007,22011,22075,22085,22128,22217,22233,22259,22261,22286,22352,22371,22394 nsv10654 5 729285 1135688 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13443,nssv14277,nssv14361,nssv13158,nssv12675,nssv15240,nssv13619,nssv12836,nssv14292,nssv13383,nssv13649,nssv13168,nssv13529,nssv12736,nssv14383,nssv13988,nssv15210,nssv13711,nssv13323,nssv13068,nssv12707,nssv14993,nssv13195,nssv13134,nssv13958,nssv13194,nssv13589,nssv13329,nssv13353,nssv14534,nssv13389,nssv12705,nssv13359,nssv15053,nssv12662,nssv13831,nssv13741,nssv14474,nssv12787,nssv12676,nssv13225,nssv12647,nssv11959,nssv13040,nssv14307,nssv15023,nssv12070,nssv12706,nssv14217,nssv12185,nssv11989,nssv14247,nssv13128,nssv14337,nssv12576,nssv12825,nssv12191,nssv12677,nssv12735,nssv14451,nssv12796,nssv13164,nssv13198,nssv13204,nssv13299,nssv14352,nssv14963,nssv14322,nssv12215,nssv14293,nssv14504,nssv13234,nssv13010,nssv13559,nssv14391,nssv12795,nssv14323,nssv15270,nssv14262,nssv13174,nssv12622,nssv15083,nssv14481,nssv13228,nssv14353,nssv13801,nssv15143,nssv12040 M 31 29 10 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10847,NA10863,NA11830,NA12155,NA12740,NA12802,NA12872,NA18502,NA18504,NA18517,NA18537,NA18552,NA18563,NA18564,NA18572,NA18853,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19144,NA19173,NA19221,NA19240 dgv1738e1 5 734302 854362 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv23269,essv24206,essv17684,essv9962,essv24629,essv9864,essv19748,essv20513,essv11382,essv4999,essv21609,essv16181,essv18531,essv19891,essv7637,essv9555,essv22023,essv6795,essv19327,essv23647,essv21879,essv21943,essv25083,essv25188,essv2156,essv12141 M 271 0 0 "" NA06991,NA07000,NA07055,NA07345,NA10835,NA10846,NA10859,NA11840,NA11881,NA12144,NA12155,NA12716,NA12763,NA12815,NA12872,NA12892,NA18505,NA18506,NA18547,NA18571,NA18594,NA18861,NA18978,NA19127,NA19144,NA19204 dgv1739e1 5 734302 876715 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv13321,essv7510,essv3571,essv6558,essv4102,essv13997,essv8578,essv100,essv13382,essv2562,essv18059,essv20715,essv11404,essv24103,essv23154,essv25086,essv8905,essv24343,essv21097 M 271 0 0 "" NA06993,NA07048,NA10831,NA10839,NA10854,NA12752,NA12814,NA18507,NA18529,NA18532,NA18624,NA18974,NA18987,NA19005,NA19098,NA19130,NA19159,NA19171,NA19192 dgv1740e1 5 734302 937439 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv16598,essv954,essv16570,essv209,essv2373,essv10968,essv2925,essv1550,essv14925,essv8397,essv14256,essv17876,essv8042,essv7899,essv14954,essv10598,essv8255,essv20471,essv7871,essv12078,essv5638,essv13264,essv9575,essv12922,essv9273,essv5617,essv20696,essv19151,essv13120,essv8666,essv6415,essv14038,essv3256,essv11301,essv2712,essv8073,essv23107,essv24175,essv4518,essv7973,essv2945 M 271 0 0 "" NA10857,NA12043,NA12249,NA12751,NA12802,NA12812,NA18501,NA18545,NA18579,NA18593,NA18623,NA18859,NA18860,NA18862,NA18863,NA18944,NA18967,NA18972,NA18981,NA18994,NA18995,NA19007,NA19012,NA19092,NA19093,NA19094,NA19099,NA19100,NA19101,NA19103,NA19129,NA19132,NA19137,NA19140,NA19153,NA19161,NA19193,NA19201,NA19211,NA19239,NA19240 nsv329251 5 735453 735453 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347829 M 24 "" nsv4677 5 737090 771047 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv446 S 9 1 0 "" NA19240 dgv196e55 5 738504 843757 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv2752076,esv34895,esv35126 M 771 3 0 "" BEC_786,NA11840,NA19161 dgv197e55 5 738504 916797 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv34224,esv34385,esv34719,esv35138,esv2752080 M 771 5 0 "" BEC_411,NA12043,NA12751,NA19137,NA19159 dgv198e55 5 738504 972497 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv34263,esv34997 M 771 2 0 "" NA18859,NA19202 dgv18n31 5 741001 868717 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis nsv471332,nsv471340 M 3 "" dgv1741e1 5 752190 820288 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv14658,essv18004 M 271 0 0 "" NA12005,NA19145 esv2752078 5 752190 876820 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6985384,essv6989493 M 771 0 1 "" SPC_157 nsv821639 5 762632 860238 CNV Gain Sebat_et_al_2004 15273396 ROMA Custom Nimblegen photoprint 85000 probe ROMA oligo array nssv1421383,nssv1421384,nssv1421386 M 31 3 0 "" nsv327679 5 764027 764998 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346257 M 24 "" dgv1742e1 5 770599 854362 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv21613,essv20733,essv5978,essv6063 M 271 0 0 "" NA07348,NA07357,NA18552,NA18603 dgv1743e1 5 770599 876715 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1079,essv21579,essv9295,essv16380,essv504,essv19824,essv4329 M 271 0 0 "" NA10847,NA12146,NA18564,NA18852,NA18952,NA18990,NA19172 dgv1744e1 5 770599 923619 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1717,essv1575,essv718,essv3826,essv11066,essv8972,essv20992,essv20876,essv12430,essv9002,essv6525,essv23704,essv3689,essv18910,essv2411,essv1062 M 271 0 0 "" NA10863,NA12145,NA12717,NA12740,NA18572,NA18940,NA18943,NA18951,NA18953,NA18968,NA18975,NA18997,NA19138,NA19139,NA19152,NA19194 esv2752081 5 771021 843757 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6988662,essv6986415 M 771 1 0 "" BEC_644 nsv469861 5 780112 879520 CNV Gain Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649882 M 265 114 0 Samples from several populations that are part of the HapMap project. "" dgv199e55 5 784584 916797 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv34255,esv34931 M 771 2 0 "" NA18968,NA19003 dgv1745e1 5 796547 854362 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv7641,essv7443 M 271 0 0 "" NA18582,NA18632 esv34916 5 796547 875123 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6979660,essv6986925 M 771 1 0 "" NA18593 nsv509043 5 800181 968319 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619401,nssv619400 M 4 1 0 "" NA10860 essv4334 5 813840 926798 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18622 nsv328262 5 827875 827934 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346840 M 24 "" nsv471431 5 848720 904101 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548263,nssv548261,nssv548262 M 3 "" dgv1746e1 5 854362 936065 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv25033,essv5833 M 271 0 0 "" NA12801,NA18524 nsv519464 5 869095 918411 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696867 S 2026 0 1 "" nsv818308 5 869095 918411 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416062,nssv1416063 M 112 2 0 "" NA12801,NA12812 nsv441936 5 886628 928018 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv329774 5 891956 891956 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv348352 M 24 "" nsv327579 5 894394 894465 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346157 M 24 "" nsv330058 5 894587 894658 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv348636 M 24 "" esv33837 5 895229 916851 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100658 S 51 1 0 "" 21656 nsv830186 5 898120 1019970 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444182,nssv1444181,nssv1444180,nssv1444187,nssv1444183,nssv1444188,nssv1444186 M 95 7 0 "" esv33445 5 1012661 1013143 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101385 S 51 0 1 "" 21805 nsv469577 5 1024507 1248692 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649690 M 265 0 5 Samples from several populations that are part of the HapMap project. "" nsv461896 5 1045509 1120535 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538222 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00546 nsv527182 5 1048270 1260527 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703578 S 2026 0 1 "" dgv686n27 5 1063083 1150281 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv461898,nsv461897 M 1557 0 2 "" HGDP00545,HGDP00602 nsv329395 5 1089971 1090094 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347973 M 24 "" nsv461900 5 1094105 1234556 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538225 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00788 nsv329100 5 1101189 1101756 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347678 M 24 "" nsv327933 5 1114402 1114527 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346511 M 24 "" nsv329413 5 1123700 1123852 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347991 M 24 "" nsv329780 5 1124312 1124312 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv348358 M 24 "" nsv328577 5 1133351 1133460 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347155 M 24 "" nsv509044 5 1200751 1318687 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619402 S 4 1 0 "" NA10860 nsv510895 5 1200751 1407392 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624296 S 4 0 0 "" NA18994 nsv10655 5 1223057 1224007 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12245,nssv13473,nssv14564,nssv12221,nssv13258,nssv12866,nssv12817,nssv13070,nssv14367,nssv13679,nssv15173,nssv14443,nssv12652,nssv13861,nssv12855,nssv12019 M 31 16 0 Samples from several populations that are part of the HapMap project. "" NA07048,NA10847,NA11830,NA12872,NA18504,NA18517,NA18537,NA18572,NA18853,NA18942,NA18972,NA19007,NA19132,NA19144,NA19173,NA19240 nsv4678 5 1227092 1272145 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8053 S 9 0 1 "" NA12156 dgv687n27 5 1229601 1260527 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv461904,nsv461905 M 1557 2 0 "" HGDP01370,HGDP01371 nsv10656 5 1231167 1233615 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12847,nssv14018,nssv12885,nssv12826,nssv13255,nssv13188,nssv12737,nssv12251,nssv14382,nssv12130,nssv13264,nssv13449,nssv12692,nssv12275 M 31 0 14 Samples from several populations that are part of the HapMap project. "" NA07029,NA10839,NA10847,NA11830,NA12155,NA12740,NA12802,NA12872,NA18502,NA18537,NA18552,NA18563,NA18564,NA18980 esv33959 5 1231950 1232951 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93938,essv100637,essv101035,essv98242,essv94672,essv94321,essv97039,essv97914,essv95588,essv93076,essv101771,essv94528,essv99046,essv93636,essv96746,essv97097,essv98650,essv100083,essv93454,essv99736,essv98004,essv96429,essv97665,essv99420,essv98388,essv94175 M 51 26 0 "" 21634,21656,21693,21772,21791,21808,21817,21837,21841,21863,21909,21932,21938,21972,22011,22075,22085,22086,22128,22217,22259,22261,22278,22335,22352,22394 nsv329212 5 1245398 1245398 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347790 M 24 "" esv32648 5 1245823 1246159 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97189 S 51 1 0 "" 22075 nsv509045 5 1335288 1508718 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620806,nssv619403,nssv619404 M 4 2 0 "" NA10860,NA15510 nsv830187 5 1371106 1562826 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444189 S 95 0 1 "" nsv4679 5 1382814 1389728 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3147,nssv3320 M 9 2 0 "" NA12878,NA18555 nsv461908 5 1423832 1447522 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538228 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00971 nsv329142 5 1435237 1435310 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347720 M 24 "" nsv4680 5 1471742 1483374 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8054 S 9 1 0 "" NA12156 nsv328158 5 1476387 1476387 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346736 M 24 "" nsv461910 5 1476905 1521287 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538229 S 1557 0 1 "" NINDS_113 nsv328768 5 1512328 1512389 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347346 M 24 "" nsv329642 5 1536831 1536930 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv348220 M 24 "" nsv509046 5 1585446 1627191 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623432,nssv619405 M 4 2 0 "" NA10860,NA18994 nsv10657 5 1597428 1686373 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14473,nssv13479,nssv12856 M 31 0 3 Samples from several populations that are part of the HapMap project. "" NA12740,NA18504,NA18552 nsv471723 5 1680164 1681819 CNV Loss Hinds et al 2006 16327809 Oligo_aCGH,PCR Custom Perlegen arrays nssv646004 M 0.973 95 "" nsv433369 5 1697735 1709054 CNV Gain Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463250 S 9 1 0 "" NA15510 nsv329999 5 1701229 1701701 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv348577 M 24 "" nsv518935 5 1706418 1708800 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696400 S 2026 0 1 "" nsv327153 5 1822103 1822349 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv345731 M 24 "" nsv509955 5 1825601 1831601 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623970,nssv618197,nssv622078 M 4 0 3 "" CHM,NA10860,NA18994 nsv461911 5 1873557 1908301 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538230 S 1557 0 1 "" NINDS_50 nsv328989 5 1895968 1896083 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347567 M 24 "" nsv330053 5 1910930 1911133 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv348631 M 24 "" nsv508344 5 1958222 2029860 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619952 S 4 0 1 "" NA15510 nsv328687 5 1977592 1978203 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347265 M 24 "" nsv516663 5 1985463 1987666 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv653297,nssv682069,nssv669410 M 2026 0 3 "" nsv4681 5 2020628 2063091 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7143 S 9 0 1 "" NA12156 nsv327737 5 2021414 2024601 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346315 M 24 "" nsv329082 5 2025343 2025444 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347660 M 24 "" nsv329542 5 2025476 2025576 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv348120 M 24 "" nsv330197 5 2037816 2037816 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv348775 M 24 "" nsv520041 5 2094665 2119165 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv660233,nssv683678,nssv675476,nssv681842,nssv679247 M 2026 0 5 "" nsv523478 5 2128162 2144155 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699241 S 2026 1 0 "" nsv515642 5 2130580 2130642 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv681856,nssv680658,nssv673210,nssv679385,nssv664208,nssv682185,nssv654297 M 2026 7 0 "" nsv518651 5 2170795 2182738 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696100 S 2026 0 1 "" nsv329978 5 2188118 2188207 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv348556 M 24 "" nsv509048 5 2196518 2230137 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620807,nssv618036,nssv619406 M 4 3 0 "" CHM,NA10860,NA15510 nsv329547 5 2205430 2205499 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv348125 M 24 "" nsv328879 5 2205675 2205744 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347457 M 24 "" nsv526334 5 2231140 2239956 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702624 S 2026 0 1 "" nsv328196 5 2233318 2233318 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346774 M 24 "" nsv328679 5 2233460 2233460 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347257 M 24 "" nsv518122 5 2339472 2344316 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695538 S 2026 0 1 "" nsv821640 5 2372402 2465379 CNV Loss Sebat_et_al_2004 15273396 ROMA Custom Nimblegen photoprint 85000 probe ROMA oligo array nssv1421387 S 31 0 1 "" nsv327759 5 2544006 2544006 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346337 M 24 "" nsv523782 5 2678833 2694522 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699607 S 2026 0 1 "" nsv461913 5 2788736 2828090 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538231 S 1557 0 1 "" 1780862414_A esv2752065 5 3129853 3207670 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6981429,essv6981430,essv6981431,essv6985569 M 771 1 0 "" BEC_191 nsv507226 5 3143565 3149565 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620278 S 4 1 0 "" NA15510 nsv830188 5 3172019 3358225 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444190 S 95 1 0 "" nsv328607 5 3194446 3194545 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347185 M 24 "" nsv516420 5 3221780 3228819 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695043,nssv698697,nssv669100,nssv668255,nssv686430,nssv693965 M 2026 1 5 "" nsv526522 5 3225052 3232620 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702834 S 2026 1 0 "" nsv518758 5 3264052 3272694 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696206 S 2026 1 0 "" nsv522264 5 3264883 3270841 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695044 S 2026 0 1 "" nsv509049 5 3323286 3414053 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619407 S 4 1 0 "" NA10860 nsv510941 5 3323286 3508136 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621577 S 4 0 0 "" NA15510 nsv520787 5 3369991 3373132 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv691947,nssv675419 M 2026 0 2 "" nsv509050 5 3425394 3508136 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619408 S 4 1 0 "" NA10860 nsv830189 5 3441264 3588044 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444191 S 95 0 1 "" nsv507227 5 3552089 3558089 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620279 S 4 1 0 "" NA15510 nsv4682 5 3595591 3640554 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8055 S 9 0 1 "" NA12156 nsv528971 5 3601746 3609260 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705670 S 2026 0 1 "" nsv461914 5 3610671 3675257 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538232 S 1557 0 1 "" 1780862306_A dgv1747e1 5 3629619 3840514 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv17326,essv9980,essv4162,essv5066,esv398 M 271 0 0 "" NA18555,NA18576,NA18856,NA19099 nsv516530 5 3644916 3652320 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv673540,nssv672191,nssv691824,nssv668911,nssv692855 M 2026 0 5 "" nsv10658 5 3645186 3661624 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15300 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19221 nsv4683 5 3690041 3698879 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2504 S 9 0 1 "" NA18555 nsv524348 5 3697729 3741588 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700256 S 2026 0 1 "" nsv509051 5 3698675 3716021 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620809 S 4 1 0 "" NA15510 nsv4684 5 3705637 3745284 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2505 S 9 0 1 "" NA18555 nsv10659 5 3710011 3713713 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12896,nssv14511,nssv12915 M 31 0 3 Samples from several populations that are part of the HapMap project. "" NA18537,NA18860,NA19007 nsv461915 5 3731658 3753168 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538233 S 1557 0 1 "" 1780862401_A nsv523463 5 3741426 3745051 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699221 S 2026 0 1 "" nsv4685 5 3797705 3842825 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8056 S 9 0 1 "" NA12156 nsv328907 5 3814433 3814433 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347485 M 24 "" nsv329791 5 3838378 3839405 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv348369 M 24 "" nsv4686 5 3939588 3960654 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4816,nssv7144 M 9 2 0 "" NA12156,NA19129 nsv523046 5 4012107 4020342 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698729 S 2026 0 1 "" nsv518961 5 4012107 4026783 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696428 S 2026 0 1 "" nsv4688 5 4034281 4047548 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3321 S 9 1 0 "" NA12878 nsv509052 5 4222691 4261253 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623434,nssv620810 M 4 2 0 "" NA15510,NA18994 nsv830190 5 4280335 4477875 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444192 S 95 1 0 "" nsv830191 5 4410811 4608531 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444217,nssv1444216,nssv1444215,nssv1444214,nssv1444194,nssv1444202,nssv1444193,nssv1444195,nssv1444201,nssv1444199,nssv1444198,nssv1444197,nssv1444200,nssv1444206,nssv1444203,nssv1444213,nssv1444211,nssv1444205,nssv1444204,nssv1444210,nssv1444208,nssv1444209,nssv1444212 M 95 11 12 "" nsv509956 5 4547603 4553603 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622079,nssv618198,nssv623971,nssv621257 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv461918 5 4701027 4714512 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538234 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00721 nsv461919 5 4798848 4838389 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538235 S 1557 0 1 "" 1780854538_A nsv830193 5 4803370 4966036 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444219 S 95 1 0 "" nsv4689 5 4937196 4972123 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3322 S 9 1 0 "" NA12878 dgv1748e1 5 5033876 5237615 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv58,essv19916 M 271 0 0 "" NA12813 nsv830194 5 5055459 5240667 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444220 S 95 1 0 "" nsv528548 5 5103830 5113591 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705160 S 2026 1 0 "" nsv4690 5 5103964 5126763 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9657 S 9 1 0 "" NA18507 nsv10660 5 5141517 5148759 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14397,nssv14541 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18860,NA19132 nsv523109 5 5145262 5146172 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698806 S 2026 0 1 "" nsv10662 5 5160264 5163038 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12926 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19007 nsv4691 5 5184756 5215800 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv11098 S 9 1 0 "" NA15510 nsv329641 5 5185421 5185421 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv348219 M 24 "" nsv526817 5 5234558 5236783 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703171 S 2026 0 1 "" nsv528309 5 5487937 5505839 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704887 S 2026 0 1 "" dgv1749e1 5 5500098 5817620 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv18581,esv277 M 271 0 0 "" NA12234 nsv528961 5 5547739 5549480 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705657 S 2026 0 1 "" nsv518861 5 5549203 5549480 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696316 S 2026 0 1 "" nsv327942 5 5663791 5664150 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346520 M 24 "" nsv4692 5 5723397 5757538 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3148 S 9 1 0 "" NA18555 nsv471724 5 5731704 5733983 CNV Loss Hinds et al 2006 16327809 Oligo_aCGH,PCR Custom Perlegen arrays nssv646005 M 0.043 95 "" nsv521118 5 5731997 5733337 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv682499,nssv692719 M 2026 0 2 "" nsv830195 5 5801849 6016043 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444221 S 95 0 1 "" nsv328347 5 5863660 5863660 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346925 M 24 "" nsv328352 5 5863691 5863691 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346930 M 24 "" nsv523920 5 5878953 6044958 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699763 S 2026 0 1 "" nsv461920 5 5893686 5910554 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538236 S 1557 0 1 "" 1798860565_A nsv509957 5 5923420 5929420 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618199 S 4 0 1 "" CHM nsv4693 5 6060705 6094716 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3149 S 9 1 0 "" NA18555 nsv527995 5 6153526 6162928 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704520 S 2026 0 1 "" nsv527097 5 6342200 6353673 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703476 S 2026 1 0 "" nsv520627 5 6363014 6366383 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697525 S 2026 0 1 "" nsv327875 5 6366954 6366954 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346453 M 24 "" nsv523894 5 6368439 6378532 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699737 S 2026 0 1 "" nsv4694 5 6476626 6511880 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3323 S 9 1 0 "" NA12878 nsv4695 5 6597111 6630576 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv448 S 9 1 0 "" NA19240 nsv4696 5 6692137 6726770 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3150 S 9 1 0 "" NA18555 nsv461922 5 6733115 6797798 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538237 S 1557 0 1 "" 1780862093_A nsv515717 5 6745053 6752224 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv659946,nssv667184,nssv660083,nssv705599,nssv664538,nssv672969,nssv661234,nssv658290,nssv671009 M 2026 0 9 "" nsv818309 5 6745053 6752224 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418064 S 112 0 1 "" NA10859 nsv830196 5 6792039 6942697 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444222 S 95 1 0 "" nsv4697 5 6817323 6850873 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3324 S 9 1 0 "" NA12878 nsv4699 5 6865171 6899089 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3326 S 9 1 0 "" NA12878 nsv830197 5 6918519 7047795 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444224,nssv1444223 M 95 2 0 "" nsv4700 5 7013898 7034972 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8057 S 9 0 1 "" NA12156 nsv4701 5 7125927 7170886 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8058 S 9 0 1 "" NA12156 nsv4702 5 7155930 7186560 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2506 S 9 1 0 "" NA18555 dgv1750e1 5 7188014 7256093 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1419,essv23291 M 271 0 0 "" NA12006 nsv517194 5 7222851 7255086 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv673423,nssv654907,nssv672020,nssv683009,nssv660657,nssv692009,nssv675586,nssv679257,nssv666220,nssv678018,nssv659093,nssv689632,nssv692320,nssv677387,nssv692680,nssv688508,nssv659057,nssv688726,nssv680682,nssv692639,nssv657461,nssv653985,nssv672090,nssv689104,nssv672667,nssv693728,nssv677484,nssv656341,nssv652259,nssv659929,nssv692365,nssv687094,nssv693680,nssv686666,nssv682211,nssv652326,nssv681231,nssv655951,nssv672715,nssv667666 M 2026 0 40 "" nsv441937 5 7230342 7242924 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv818310 5 7230740 7246206 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415751,nssv1415749 M 112 0 2 "" NA12865,NA12875 essv24620 5 7231622 7242925 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12875 nsv509958 5 7280252 7286252 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618200,nssv623972,nssv622080 M 4 0 3 "" CHM,NA10860,NA18994 nsv517195 5 7291212 7306529 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv671196,nssv653987 M 2026 2 0 "" nsv4703 5 7306202 7333431 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4817,nssv3327 M 9 2 0 "" NA12878,NA19129 nsv509053 5 7311747 7324599 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623435,nssv619410 M 4 2 0 "" NA10860,NA18994 nsv510896 5 7311747 7349581 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618644,nssv621578 M 4 0 0 "" CHM,NA15510 nsv507228 5 7337016 7343016 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617660 S 4 1 0 "" CHM nsv830198 5 7393218 7564793 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444225 S 95 1 0 "" nsv527103 5 7409978 7420623 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703483 S 2026 0 1 "" nsv521728 5 7428754 7432003 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694488 S 2026 1 0 "" nsv517197 5 7458952 7531914 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv689432,nssv671197,nssv653988,nssv658547 M 2026 4 0 "" nsv461926 5 7475768 7519743 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538238 S 1557 1 0 "" NINDS_14 nsv4704 5 7681329 7715714 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2683 S 9 1 0 "" NA18555 nsv327244 5 7746550 7752194 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv345822 M 24 "" dgv334n21 5 7940109 7949511 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv518862,nsv525097 M 2026 2 0 "" nsv508345 5 7943892 7986471 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622518 S 4 0 1 "" NA18994 nsv4705 5 7948186 7980395 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7145 S 9 1 0 "" NA12156 nsv507229 5 7969535 7975535 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620280 S 4 1 0 "" NA15510 nsv4706 5 7970701 8009246 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8059 S 9 0 1 "" NA12156 nsv327266 5 8134266 8134321 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv345844 M 24 "" nsv508346 5 8302498 8328350 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617507 S 4 0 1 "" CHM nsv517133 5 8312322 8313550 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv680278,nssv680414,nssv683108,nssv670327,nssv653837,nssv691196,nssv665154,nssv680326,nssv665104,nssv665345,nssv678250 M 2026 0 11 "" nsv526754 5 8492356 8493728 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703101 S 2026 0 1 "" nsv461929 5 8520900 8717747 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538239 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01297 nsv461930 5 8580086 8592813 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538240 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00958 nsv329342 5 8596617 8596617 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347920 M 24 "" nsv520306 5 8648305 8650846 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv672575,nssv679960,nssv662705 M 2026 0 3 "" dgv108n17 5 8752765 8802282 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv436977,nsv436978,nsv436979 M 60 0 3 "" NA10847,NA12802,NA12865 nsv461931 5 8753487 8823185 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538241 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00007 nsv10663 5 8753828 8802424 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12160,nssv12305 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA10847,NA12802 dgv1751e1 5 8754920 8843546 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv23754,esv963,essv24214,essv25109,essv24455,essv22689,essv19831 M 271 0 0 "" NA10847,NA11994,NA12004,NA12144,NA12814,NA12865 nsv516885 5 8755372 8800106 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694039,nssv675435,nssv657117,nssv680023,nssv679765,nssv688871,nssv670596,nssv668739,nssv670404,nssv685799,nssv676621,nssv674009,nssv662991,nssv678260,nssv677662,nssv682243,nssv685075,nssv682032,nssv691948,nssv676668,nssv660153,nssv668885,nssv677647,nssv653470,nssv669780,nssv691171,nssv668705,nssv658478,nssv675529,nssv671899,nssv658919,nssv663738,nssv657483,nssv661524,nssv664834,nssv667034,nssv667778,nssv688089,nssv676943,nssv667073,nssv690460,nssv689469,nssv670441,nssv660163,nssv654392,nssv685404,nssv669222,nssv691237,nssv658695,nssv686920,nssv705357,nssv660499,nssv666858,nssv668961,nssv660524,nssv675420,nssv663837,nssv659947,nssv681919,nssv666137,nssv688013,nssv658531,nssv680196 M 2026 0 63 "" dgv688n27 5 8755372 8811041 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv461935,nsv461940,nsv461932,nsv461937,nsv461933,nsv461941,nsv461942,nsv461936,nsv461938 M 1557 0 9 "" 1780854558_A,1780862071_A,1788485381_A,1798860306_A,HGDP00515,HGDP01273,NINDS_132,NINDS_202,NINDS_96 dgv1752e1 5 8755522 8805756 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv22728,essv20685,essv20519,essv24616,essv21742 M 271 0 0 "" NA10861,NA12239,NA12716,NA12802,NA12875 nsv442935 5 8755523 8800138 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv461934 5 8756148 8779235 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538244 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01304 nsv818312 5 8756148 8800106 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418367,nssv1415753,nssv1418368,nssv1415752,nssv1415897,nssv1415896 M 112 0 6 "" NA10847,NA10861,NA11994,NA12239,NA12865,NA12875 esv32808 5 8758764 8800030 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv96941,essv96698,essv100008 M 51 1 2 "" 21817,22011,22086 nsv461943 5 8772378 8800106 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538252 S 1557 0 1 "" 1780862419_A nsv830199 5 8908056 9077096 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444226 S 95 0 1 "" nsv830200 5 9134023 9322495 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444227 S 95 0 1 "" nsv4707 5 9177819 9190589 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8061 S 9 0 1 "" NA12156 nsv4708 5 9298266 9343172 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8062 S 9 0 1 "" NA12156 nsv519704 5 9396913 9396999 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv676762,nssv657671 M 2026 0 2 "" nsv523773 5 9410942 9411953 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699595 S 2026 0 1 "" nsv4710 5 9418666 9451750 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4818 S 9 1 0 "" NA19129 nsv328306 5 9453611 9453880 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346884 M 24 "" nsv330056 5 9455604 9455604 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv348634 M 24 "" nsv328692 5 9464761 9465074 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347270 M 24 "" nsv509959 5 9488200 9494200 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622081 S 4 0 1 "" NA10860 nsv519747 5 9627755 9628041 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697029 S 2026 0 1 "" nsv528968 5 9720062 9727736 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705667 S 2026 1 0 "" nsv4711 5 9810391 9842920 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10437 S 9 1 0 "" NA18956 esv2422451 5 9811100 9848587 CNV Deletion Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161294 S 181 0 1 "" ND01570 dgv1753e1 5 9850992 10044066 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv24479,esv778 M 271 0 0 "" NA12056 nsv10664 5 9872148 9888645 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15330 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19221 nsv4712 5 9932144 9976920 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8063 S 9 0 1 "" NA12156 dgv689n27 5 9949163 9986220 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv461967,nsv461945,nsv461968,nsv461969,nsv461970 M 1557 0 5 "" 1780862015_A,1780862516_A,HGDP00620,HGDP00667,NINDS_203 essv18672 5 9950967 10008044 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12056 dgv690n27 5 9951962 9977497 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv461956,nsv461958,nsv461947,nsv461961,nsv461954,nsv461959,nsv461952,nsv461960,nsv461966,nsv461955,nsv461953,nsv461963,nsv461964,nsv461949,nsv461957,nsv461948,nsv461965 M 1557 0 17 "" 1780854464_A,1798860210_A,HGDP00041,HGDP00092,HGDP00206,HGDP00513,HGDP00522,HGDP00558,HGDP00564,HGDP00607,HGDP00626,HGDP00632,HGDP00643,HGDP00886,HGDP01244,HGDP01265,NINDS_29 nsv818313 5 9955340 9977172 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416238 S 112 0 1 "" NA12056 nsv517239 5 9955340 9985210 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv658031,nssv673954,nssv666164,nssv692321,nssv668518,nssv687163,nssv658899,nssv655457,nssv683420,nssv657118,nssv657148,nssv652124,nssv663804,nssv658055,nssv653263,nssv689633,nssv679156,nssv680824,nssv688090,nssv705205,nssv684770,nssv678019,nssv662825,nssv651706,nssv652638,nssv682968,nssv672938,nssv668763,nssv655996,nssv681979,nssv654107,nssv672875,nssv693612,nssv657642 M 2026 0 34 "" nsv461971 5 9958783 9972695 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538278 S 1557 0 1 "" 1780862088_A nsv461972 5 9968399 9977497 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538279 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00017 esv32536 5 10033433 10038721 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97196 S 51 0 1 "" 22075 esv33231 5 10038721 10325709 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99523 S 51 0 1 "" 22335 nsv830201 5 10100162 10303361 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444228 S 95 1 0 "" nsv525142 5 10120090 10157968 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701212 S 2026 1 0 "" nsv527558 5 10125247 10140511 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704019 S 2026 1 0 "" nsv528357 5 10180437 10193391 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704942 S 2026 0 1 "" nsv525565 5 10279025 10283956 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701704 S 2026 0 1 "" nsv461975 5 10290036 10315158 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538280 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01383 esv33079 5 10327118 10327640 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98736,essv93859,essv98193,essv97808,essv97394,essv101762,essv99091,essv93681,essv98052,essv96550,essv97620,essv99534,essv98405 M 51 2 11 "" 21606,21634,21772,21837,21879,21909,21938,21972,22259,22261,22278,22335,22352 esv32585 5 10330798 10332458 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100047 S 51 0 1 "" 22086 nsv4713 5 10426328 10471073 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8064 S 9 0 1 "" NA12156 nsv329900 5 10508985 10508985 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv348478 M 24 "" nsv4714 5 10578854 10613189 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3328 S 9 1 0 "" NA12878 nsv441938 5 10580501 10584996 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv526912 5 10589845 10590351 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703273 S 2026 0 1 "" nsv329316 5 10627957 10628292 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347894 M 24 "" nsv507230 5 10641861 10647861 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617661 S 4 1 0 "" CHM nsv329565 5 10692098 10693244 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv348143 M 24 "" nsv521304 5 10763716 10780639 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697910 S 2026 0 1 "" nsv518038 5 10779281 11291622 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695449 S 2026 1 0 "" nsv469820 5 10824336 10974776 CNV Gain Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649841 M 265 0 6 Samples from several populations that are part of the HapMap project. "" nsv509960 5 10828566 10834566 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618201 S 4 0 1 "" CHM esv33479 5 10903203 10903519 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv94839,essv94420,essv97888,essv92970,essv93417,essv96271 M 51 0 6 "" 21791,21808,21837,21939,22128,22371 esv32730 5 10925852 10927832 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100696 S 51 0 1 "" 21656 nsv523269 5 10959464 10963739 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699003 S 2026 1 0 "" nsv528640 5 10959464 10969699 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705271 S 2026 1 0 "" nsv524593 5 11020299 11021872 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700552 S 2026 0 1 "" nsv830202 5 11056280 11229454 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444230 S 95 1 0 "" nsv818314 5 11181377 11187772 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417464 S 112 0 1 "" NA18960 nsv441939 5 11181478 11184110 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv327919 5 11181945 11182219 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346497 M 24 "" nsv328573 5 11182111 11182219 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347151 M 24 "" nsv521357 5 11219948 11228485 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694436 S 2026 0 1 "" nsv461976 5 11219948 11230065 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538281 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00239 nsv522498 5 11222861 11223145 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705866 S 2026 0 1 "" nsv515616 5 11225736 11227047 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv665784,nssv654712,nssv664113 M 2026 0 3 "" nsv519562 5 11233596 11239685 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696922 S 2026 0 1 "" nsv327742 5 11339055 11339055 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346320 M 24 "" nsv830205 5 11393262 11577739 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444231 S 95 1 0 "" nsv528520 5 11582293 11592795 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705130 S 2026 0 1 "" nsv523245 5 11697503 11699533 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698974 S 2026 0 1 "" nsv818315 5 11697503 11730173 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415640 S 112 0 1 "" NA12248 nsv4715 5 11724825 11735445 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8065 S 9 0 1 "" NA12156 nsv524275 5 11769407 11776822 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700173 S 2026 0 1 "" nsv525891 5 11796161 11810020 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702094 S 2026 0 1 "" dgv1754e1 5 12087304 12261440 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv6830,esv177 M 271 0 0 "" NA18579 nsv522521 5 12216379 12227985 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705891 S 2026 1 0 "" dgv335n21 5 12314596 12363717 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv527153,nsv520904 M 2026 0 2 "" nsv4716 5 12387952 12432645 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8066 S 9 0 1 "" NA12156 nsv520673 5 12442751 12786263 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697550 S 2026 0 1 "" nsv329313 5 12488663 12488739 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347891 M 24 "" nsv507231 5 12523281 12529281 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620281,nssv622924,nssv621777 M 4 3 0 "" NA10860,NA15510,NA18994 nsv830206 5 12594346 12756682 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444232 S 95 1 0 "" nsv461978 5 12619885 13381289 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538282 S 1557 0 1 "" 1798860113_A nsv818316 5 12652348 12659091 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415641,nssv1415642,nssv1417438 M 112 0 3 "" NA10835,NA10863,NA12248 dgv691n27 5 12652348 12723184 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv461979,nsv461980 M 1557 0 2 "" HGDP01003,HGDP01015 nsv4717 5 12680678 12713711 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3329 S 9 1 0 "" NA12878 nsv516405 5 12723184 12786263 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv685986,nssv688387,nssv668112,nssv672428,nssv678228,nssv691797,nssv693170,nssv658510 M 2026 0 8 "" nsv509054 5 12733082 12752378 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619411,nssv623436 M 4 2 0 "" NA10860,NA18994 nsv510897 5 12733082 12771520 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621579 S 4 0 0 "" NA15510 nsv4718 5 12737830 12749336 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv449 S 9 1 0 "" NA19240 nsv4719 5 12794215 12838861 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8067 S 9 0 1 "" NA12156 nsv436981 5 12833942 13404018 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv466862 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA10863 dgv1755e1 5 12839321 13039901 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv4907,esv304 M 271 0 0 "" NA18561 nsv10665 5 12853179 12855012 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14594 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18517 nsv10666 5 12863778 12873827 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12877,nssv15203,nssv13509,nssv12606,nssv12190,nssv13224,nssv14048,nssv13503,nssv13130,nssv12281,nssv12722,nssv12335,nssv14457,nssv13294,nssv12886 M 31 0 15 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10847,NA10863,NA11830,NA12155,NA12740,NA12802,NA12872,NA18552,NA18853,NA18972,NA18975,NA19132 esv33805 5 12864030 12902553 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98903,essv98831,essv93960,essv100683,essv100970,essv98258,essv94732,essv94460,essv96885,essv97833,essv95684,essv97360,essv101699,essv95782,essv98947,essv92986,essv93602,essv93789,essv96671,essv97104,essv93425,essv99581,essv96536,essv97774,essv98490,essv96282,essv94262 M 51 15 10 "" 21606,21634,21656,21693,21772,21791,21808,21817,21837,21841,21879,21909,21911,21938,21939,21972,22011,22075,22128,22217,22261,22278,22352,22371,22394 nsv508347 5 12864732 12873968 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617508 S 4 0 1 "" CHM nsv442936 5 12868780 12879650 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv433224 5 12874544 12974838 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463105 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA19240 nsv508349 5 13008564 13023343 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622519 S 4 0 1 "" NA18994 nsv10667 5 13027662 13034769 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15360,nssv14442,nssv12311 M 31 0 3 Samples from several populations that are part of the HapMap project. "" NA12872,NA18502,NA19221 nsv520304 5 13028063 13085839 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697337 S 2026 1 0 "" nsv433225 5 13093757 13194562 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463106 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA12156 nsv433226 5 13150705 13224349 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463107 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA19129 dgv1756e1 5 13197682 13401985 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv19868,essv23680,essv20980 M 271 0 0 "" NA10863,NA12234 dgv1757e1 5 13197682 13456575 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv845,essv18621 M 271 0 0 "" NA12234 nsv10668 5 13204049 13207952 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13709 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19173 nsv10669 5 13248440 13392025 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15233,nssv12636 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA10863,NA18972 dgv52n64 5 13254512 13385878 CNV Loss Wang_et_al_2007 17921354 SNP_array nsv818318,nsv818317 M 112 0 2 "" NA10863,NA12234 dgv200e55 5 13258665 13394742 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv34508,esv34691 M 771 0 2 "" NA10863,NA12234 esv33802 5 13328913 13329073 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93818,essv98548,essv96420 M 51 0 3 "" 21634,22085,22371 nsv526749 5 13345260 13346074 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703095 S 2026 0 1 "" nsv515579 5 13420397 13429546 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv663957,nssv661883,nssv675513,nssv689049,nssv680488,nssv688776,nssv678201 M 2026 0 7 "" nsv4721 5 13453033 13486435 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3330 S 9 0 1 "" NA12878 nsv830207 5 13465637 13640169 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444233 S 95 1 0 "" nsv327575 5 13480688 13480740 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346153 M 24 "" nsv522857 5 13501037 13511367 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698512 S 2026 1 0 "" nsv821641 5 13570805 13593437 CNV Loss Sebat_et_al_2004 15273396 ROMA Custom Nimblegen photoprint 85000 probe ROMA oligo array nssv1421388 S 31 0 1 "" nsv518248 5 13584250 13595802 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695679 S 2026 0 1 "" nsv522038 5 13686968 13698988 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694808 S 2026 0 1 "" nsv4722 5 13702737 13737390 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2684 S 9 1 0 "" NA18555 nsv830208 5 13753248 13914157 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444234 S 95 1 0 "" nsv518158 5 13803898 13809463 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695579 S 2026 0 1 "" nsv516415 5 13841886 14263897 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv658215,nssv681786,nssv699697,nssv696287,nssv704787,nssv692878,nssv690137,nssv671451,nssv703364,nssv693944,nssv668217 M 2026 7 4 "" nsv4723 5 13918461 13941590 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2685 S 9 1 0 "" NA18555 esv2752061 5 14162455 14231040 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6987286,essv6985867 M 771 1 0 "" SPC_70 nsv830209 5 14207989 14354758 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444235 S 95 1 0 "" nsv4724 5 14278543 14296167 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8068 S 9 0 1 "" NA12156 nsv830210 5 14308039 14484552 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444236 S 95 1 0 "" nsv442938 5 14365802 14369381 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv4725 5 14522602 14567446 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8069 S 9 0 1 "" NA12156 nsv830211 5 14527675 14728776 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444237 S 95 0 1 "" nsv4726 5 14598656 14614165 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2686 S 9 1 0 "" NA18555 nsv523575 5 14628698 14634556 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699360 S 2026 0 1 "" nsv4727 5 14684491 14710318 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8071,nssv450 M 9 2 0 "" NA12156,NA19240 nsv528770 5 14708699 14710062 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705434 S 2026 0 1 "" nsv4728 5 14744412 14779011 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2687 S 9 1 0 "" NA18555 nsv4729 5 14826557 14859166 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7146 S 9 1 0 "" NA12156 nsv830212 5 14837197 15019683 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444238 S 95 0 1 "" nsv461982 5 14996456 15097842 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538285 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00598 nsv524142 5 15039700 15071537 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700020 S 2026 0 1 "" nsv516929 5 15140791 15923300 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv657726,nssv692788,nssv661917,nssv682854,nssv660799,nssv660545,nssv663565,nssv688312,nssv690715,nssv665323,nssv665419,nssv664207,nssv659564,nssv662849,nssv684012,nssv671673,nssv684976,nssv681568,nssv664169,nssv664537,nssv662301,nssv690593,nssv687979,nssv672358,nssv668059,nssv686251,nssv673422,nssv660162,nssv678973,nssv684303,nssv678777,nssv662214,nssv686905,nssv670543,nssv655891,nssv662235,nssv658831,nssv693766,nssv682358,nssv658028,nssv674480,nssv674392,nssv682469,nssv662496,nssv652671,nssv689003,nssv678422,nssv665716,nssv691001,nssv688455,nssv676597,nssv654347,nssv668361,nssv676272,nssv657564,nssv675370,nssv671835,nssv660344,nssv661081,nssv655778,nssv681901,nssv653219,nssv703537,nssv675451,nssv678017,nssv693111,nssv658791,nssv678356,nssv686073,nssv676304,nssv659928,nssv698238,nssv657941,nssv692363,nssv676815,nssv690899,nssv668440,nssv679883,nssv683265,nssv651696,nssv666182,nssv691781,nssv687229,nssv671554,nssv665595,nssv688286,nssv674809,nssv680522,nssv662892,nssv658309,nssv670595,nssv698932,nssv675418,nssv687371,nssv685987,nssv674512,nssv687915,nssv662663,nssv655918,nssv661966,nssv658645,nssv680277,nssv668820,nssv685309,nssv691925,nssv681316,nssv693917,nssv677483,nssv692286,nssv664360,nssv666197,nssv681448,nssv660846,nssv674104,nssv691071,nssv652253,nssv682050,nssv673009,nssv663497,nssv655434,nssv690663,nssv670809,nssv655482,nssv692637,nssv675850,nssv670014,nssv658511,nssv655593,nssv670376,nssv657703,nssv691209,nssv666502,nssv691462,nssv667582,nssv679305,nssv678680,nssv662578,nssv676432,nssv675585,nssv652944,nssv652488,nssv689384,nssv688131,nssv682785,nssv676476,nssv661991,nssv680489,nssv683199,nssv670893,nssv668620,nssv659690,nssv663448,nssv680588,nssv660634,nssv662330,nssv657641,nssv667904,nssv670126,nssv652806,nssv655672,nssv663836,nssv682184,nssv651975,nssv687743,nssv692101,nssv684768,nssv653166,nssv671971,nssv695796,nssv652325,nssv692735,nssv690330,nssv678734,nssv683324,nssv660415,nssv677951,nssv672795,nssv693519,nssv691194,nssv690615,nssv668233,nssv690371,nssv661660,nssv690576,nssv690648,nssv676560,nssv680175,nssv660376,nssv666978,nssv651972,nssv681918,nssv675676,nssv671079,nssv670567,nssv686090,nssv657850,nssv653288,nssv684426,nssv687826,nssv655388,nssv671755,nssv660571,nssv673257,nssv679146,nssv653735,nssv691288,nssv666737,nssv679010,nssv656238,nssv660108,nssv687136,nssv653215,nssv671479,nssv652539,nssv674794,nssv700545 M 2026 16 200 "" nsv830213 5 15234147 15375203 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444239 S 95 1 0 "" nsv330190 5 15318390 15318457 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv348768 M 24 "" nsv330111 5 15318390 15318491 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv348689 M 24 "" dgv1758e1 5 15362984 15386853 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv12908,esv1407 M 271 0 0 "" NA18522 nsv10670 5 15363087 15364669 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12797 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18563 nsv507232 5 15415969 15421969 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620282 S 4 1 0 "" NA15510 nsv4730 5 15577167 15608151 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4819 S 9 1 0 "" NA19129 nsv830214 5 15642809 15844032 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444241 S 95 1 0 "" nsv4732 5 15651325 15689520 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8072 S 9 0 1 "" NA12156 nsv4733 5 15662215 15694646 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10438 S 9 1 0 "" NA18956 nsv461983 5 15727635 15773106 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538286 S 1557 0 1 "" 1780862347_A essv11607 5 15731556 15773478 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19207 esv1150 5 15731556 15863987 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 "" essv6409 5 15747406 15776346 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18545 dgv1759e1 5 15767022 15776346 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2766,essv8568,essv943,essv5876,essv3905,essv2743,essv3637 M 271 0 0 "" NA18562,NA18949,NA18960,NA18965,NA18966,NA19000,NA19130 dgv1760e1 5 15767022 15863987 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv22280,essv21896,essv24095 M 271 0 0 "" NA07048,NA10838,NA12762 essv19140 5 15769286 15773478 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12812 dgv1761e1 5 15769286 15782509 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv628,essv15924,essv18513,essv21947,essv20450,essv5648,essv5690 M 271 0 0 "" NA06994,NA07000,NA12763,NA18579,NA18605,NA18998,NA19205 dgv1762e1 5 15769286 15787898 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv19118,essv25161,essv24319,essv20849,essv7439,essv21499,essv19739,essv23637,essv21100 M 271 0 0 "" NA07055,NA10854,NA10859,NA11829,NA11839,NA11882,NA12003,NA12044,NA18582 essv23288 5 15769286 15799398 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12006 nsv10671 5 15772037 15774344 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13533 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA07048 nsv442939 5 15772218 15773597 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" essv11383 5 15772222 15773478 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19127 dgv1763e1 5 15772222 15776346 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv16608,essv7940,essv14904,essv25102,essv12953 M 271 0 0 "" NA12814,NA19102,NA19129,NA19203,NA19208 nsv818319 5 15772350 15773478 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416064 S 112 0 1 "" NA12812 nsv471736 5 15772456 15773910 CNV Loss Hinds et al 2006 16327809 Oligo_aCGH,PCR Custom Perlegen arrays nssv646017 M 0.317 95 "" nsv461985 5 15772769 15773478 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538288 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00057 nsv818320 5 15772769 15773478 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417465,nssv1417020,nssv1417484,nssv1418066,nssv1417378,nssv1416784,nssv1417019,nssv1418065 M 112 0 8 "" NA06994,NA07000,NA10859,NA11882,NA12044,NA18949,NA18960,NA18965 nsv4734 5 15781066 15814192 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2507 S 9 1 0 "" NA18555 nsv830216 5 15913662 16113420 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444242 S 95 0 1 "" nsv4735 5 15969346 16014432 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8073 S 9 0 1 "" NA12156 nsv830217 5 16057704 16278229 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444243 S 95 1 0 "" nsv507233 5 16167767 16173767 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617662,nssv622925,nssv621778,nssv620283 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv471738 5 16177796 16178501 CNV Loss Hinds et al 2006 16327809 Oligo_aCGH,PCR Custom Perlegen arrays nssv646019 M 0.063 95 "" nsv330082 5 16203013 16203779 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv348660 M 24 "" nsv4736 5 16446955 16492055 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8074 S 9 0 1 "" NA12156 nsv522062 5 16723618 16732966 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694126 S 2026 0 1 "" nsv516145 5 16726685 16732966 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv677394,nssv676223,nssv666464 M 2026 0 3 "" nsv4737 5 16734166 16760357 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8075 S 9 0 1 "" NA12156 nsv520128 5 16790513 16799784 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv687119,nssv661052 M 2026 0 2 "" nsv461987 5 16887568 16901200 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538289 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01321 nsv471739 5 16942000 16944718 CNV Loss Hinds et al 2006 16327809 Oligo_aCGH,PCR Custom Perlegen arrays nssv646020 M 0.042 95 "" nsv328398 5 16997204 16997291 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346976 M 24 "" nsv327670 5 17131843 17138787 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346248 M 24 "" nsv830218 5 17146162 17343045 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444244 S 95 0 1 "" nsv4738 5 17231267 17276677 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv7147 S 9 0 1 "" NA12156 nsv521697 5 17264649 17278333 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698318 S 2026 0 1 "" nsv515766 5 17336367 17359790 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv686585,nssv659309,nssv685447,nssv664714 M 2026 0 4 "" nsv830219 5 17378802 17571914 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444250,nssv1444245,nssv1444246,nssv1444249,nssv1444247,nssv1444248,nssv1444253,nssv1444252 M 95 7 1 "" nsv441940 5 17400702 17409239 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv1764e1 5 17417700 17597918 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv12594,essv16793,essv2853 M 271 0 0 "" NA18872,NA18953,NA19098 dgv1765e1 5 17417700 17757290 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv814,essv10170,essv22518,essv18198,essv696,essv17062,essv20292,essv6762,essv1255,essv3451,essv8100,essv10727,essv12977,essv4230,essv15660,essv1192,essv15995,essv5599,essv22139,essv2484,essv12212,essv7233,essv13547,essv547,essv4466,essv4158,essv21784,essv15100,essv17599,essv16483,essv15754,essv21719,essv5941,essv7708,essv4204,essv16974,essv3150,essv16209,essv5057,essv920,essv2239,essv7537,essv13783,essv11616,essv20,essv12351,essv11736,essv6284,essv24397,essv15171,essv15608,essv5242,essv13083,essv13906,essv19293,essv14515,essv18924,essv24560,essv14335,essv9107,essv18153,essv22340,essv8459,essv17576,essv24986,essv9237,essv16461,essv17175,essv9713,essv12749,essv1020,essv18256,essv3822,essv12381,essv3358,essv229,essv2031,essv7420,essv14770,essv459,essv20605,essv3267,essv2222,essv2806,essv10559,essv5143,essv6031,essv1113,essv23604,essv17236,essv2633,essv124,essv11132,essv12501,essv22213,essv17955,essv382 M 271 0 0 "" NA06985,NA07056,NA10838,NA10839,NA10846,NA10857,NA11882,NA11992,NA11993,NA12003,NA12005,NA12006,NA12044,NA12057,NA12144,NA12239,NA12248,NA12707,NA12753,NA12762,NA18501,NA18503,NA18504,NA18516,NA18523,NA18526,NA18529,NA18545,NA18547,NA18550,NA18552,NA18555,NA18562,NA18564,NA18571,NA18576,NA18603,NA18623,NA18624,NA18633,NA18636,NA18852,NA18854,NA18859,NA18860,NA18912,NA18913,NA18914,NA18943,NA18945,NA18948,NA18949,NA18951,NA18952,NA18960,NA18964,NA18966,NA18967,NA18968,NA18971,NA18972,NA18973,NA18975,NA18987,NA18991,NA18992,NA18995,NA18998,NA18999,NA19000,NA19005,NA19012,NA19101,NA19128,NA19129,NA19130,NA19131,NA19137,NA19138,NA19139,NA19144,NA19153,NA19154,NA19159,NA19160,NA19161,NA19171,NA19172,NA19194,NA19202,NA19206,NA19207,NA19210,NA19211,NA19238,NA19240 dgv1766e1 5 17417700 17972161 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv18854,esv680 M 271 0 0 "" NA12751 nsv461989 5 17456618 17755558 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538290 S 1557 1 0 "" 1780862373_A nsv10673 5 17510191 17526214 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14487,nssv14571,nssv14503 M 31 0 3 Samples from several populations that are part of the HapMap project. "" NA18504,NA18860,NA19132 nsv516462 5 17522464 17713838 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv660906,nssv677101,nssv663084,nssv703713,nssv680158,nssv666723,nssv670568,nssv672329,nssv652942,nssv704495,nssv700806,nssv698572,nssv668565,nssv656678,nssv657876,nssv653910,nssv690900,nssv676598,nssv688111,nssv657172,nssv660941,nssv660800,nssv687182,nssv698261,nssv663711,nssv687705,nssv681704,nssv661451,nssv669909,nssv672058 M 2026 1 29 "" nsv7368 5 17543924 17639958 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2508,nssv11099,nssv10439,nssv4820 M 9 0 0 "" NA15510,NA18555,NA18956,NA19129 dgv1767e1 5 17544212 17564713 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv9510,essv12906 M 271 0 0 "" NA18521,NA18522 dgv1768e1 5 17544212 17675214 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv8022,essv13386,essv8682,essv24611,essv3427 M 271 0 0 "" NA12875,NA18871,NA18872,NA18912,NA18956 dgv1769e1 5 17544212 17725039 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv10179,essv11605,essv9851,essv24026 M 271 0 0 "" NA12873,NA18516,NA19144,NA19207 nsv10674 5 17548989 17835098 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13288,nssv14654,nssv13284,nssv13384,nssv12916,nssv12827,nssv12857,nssv14624,nssv13318,nssv14684,nssv13278,nssv13378,nssv14714,nssv14533,nssv13248,nssv12395,nssv13218,nssv15263,nssv14601,nssv13951,nssv13348,nssv14804,nssv15293,nssv13891,nssv12956,nssv13315,nssv12079,nssv13308,nssv12986,nssv14661,nssv13324,nssv13539,nssv13354,nssv12946,nssv13569,nssv13254,nssv12365,nssv12049,nssv13444,nssv13921,nssv14631,nssv13285,nssv14563 M 31 8 12 Samples from several populations that are part of the HapMap project. "" NA10839,NA10847,NA12740,NA18504,NA18517,NA18552,NA18563,NA18564,NA18572,NA18860,NA18972,NA18975,NA18980,NA19007,NA19144,NA19240 nsv442940 5 17563468 17568801 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" esv35046 5 17564713 17829300 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6978846,essv6978845,essv6978848,essv6988059,essv6978847 M 771 0 1 "" NA12740 nsv522154 5 17566394 17776087 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694927 S 2026 1 0 "" nsv509055 5 17570558 17663978 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620812,nssv619412,nssv623437 M 4 3 0 "" NA10860,NA15510,NA18994 nsv4739 5 17570733 17573885 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv451 S 9 1 0 "" NA19240 nsv4740 5 17580066 17653641 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2509,nssv10440,nssv3331 M 9 0 3 "" NA12878,NA18555,NA18956 essv21390 5 17583652 17856890 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12740 nsv4741 5 17632762 17636326 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3332 S 9 1 0 "" NA12878 nsv4745 5 17641841 17677358 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2510,nssv454,nssv452,nssv3333,nssv4821,nssv7148 M 9 5 0 "" NA12156,NA12878,NA18555,NA19129,NA19240 esv33173 5 17643755 17653628 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv94844,essv95824 M 51 0 2 "" 21791,21911 nsv442941 5 17644656 17698273 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv1770e1 5 17645906 17675214 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv15936,essv24444 M 271 0 0 "" NA12865,NA18515 dgv1771e1 5 17645906 17704795 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv14655,essv10597 M 271 0 0 "" NA19145,NA19211 dgv1772e1 5 17645906 17734268 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv17366,essv8973 M 271 0 0 "" NA18517,NA19139 nsv469893 5 17647192 17839000 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649914 M 265 0 0 Samples from several populations that are part of the HapMap project. "" esv34534 5 17647713 17829272 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6988062,essv6978869,essv6978868 M 771 0 1 "" NA12751 nsv830220 5 17648993 17755805 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444274,nssv1444272,nssv1444271,nssv1444275,nssv1444276,nssv1444257,nssv1444254,nssv1444256,nssv1444255,nssv1444263,nssv1444259,nssv1444270,nssv1444258,nssv1444260,nssv1444261,nssv1444269,nssv1444265,nssv1444268,nssv1444264,nssv1444267,nssv1444266 M 95 20 1 "" nsv433227 5 17649730 17703857 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463108 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA18517 nsv461990 5 17671545 17676715 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538291 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00479 nsv818321 5 17671545 17676715 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415754,nssv1415755 M 112 0 2 "" NA12865,NA12875 dgv53n64 5 17671545 17703857 CNV Loss Wang_et_al_2007 17921354 SNP_array nsv818323,nsv818324 M 112 0 6 "" NA18515,NA18516,NA18517,NA19137,NA19139,NA19144 nsv517998 5 17671545 17775178 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695409 S 2026 0 1 "" dgv1773e1 5 17672912 17840103 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv24171,essv23707 M 271 0 0 "" NA12740,NA12751 dgv692n27 5 17675214 17780897 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv461992,nsv461991 M 1557 0 2 "" 1780862180_A,HGDP00940 nsv524485 5 17695703 17755558 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700423 S 2026 0 1 "" nsv818325 5 17695703 17830571 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415954,nssv1415953 M 112 0 2 "" NA12740,NA12751 nsv471740 5 17702053 17702849 CNV Loss Hinds et al 2006 16327809 Oligo_aCGH,PCR Custom Perlegen arrays nssv646021 M 0.085 95 "" nsv461993 5 17713466 17730509 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538294 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01339 nsv330110 5 17717907 17717995 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv348688 M 24 "" nsv4746 5 17738170 17784943 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv455 S 9 0 1 "" NA19240 nsv469764 5 17757573 17916587 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649785 M 265 0 0 Samples from several populations that are part of the HapMap project. "" nsv509961 5 17791140 17797140 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623973,nssv622082 M 4 0 2 "" NA10860,NA18994 nsv4747 5 17926915 17971662 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8076 S 9 0 1 "" NA12156 nsv4748 5 18012523 18045732 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8077 S 9 1 0 "" NA12156 nsv507234 5 18220310 18226310 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620284 S 4 1 0 "" NA15510 nsv818326 5 18265888 18276508 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417525 S 112 1 0 "" NA18968 nsv508350 5 18271050 18338328 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622520 S 4 0 1 "" NA18994 nsv328120 5 18322585 18327399 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346698 M 24 "" nsv4749 5 18460734 18505930 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8078 S 9 0 1 "" NA12156 nsv461994 5 18528596 18583537 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538295 S 1557 0 1 "" 1788485381_A nsv516047 5 18554326 18701259 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv665879,nssv655389,nssv668218,nssv679737,nssv690688,nssv658832,nssv671155,nssv692267,nssv686649,nssv699673,nssv673798 M 2026 9 2 "" esv2422186 5 18692894 19240582 CNV Deletion Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161406 S 181 0 1 "" ND01705 dgv693n27 5 18700907 18762773 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv461996,nsv461998 M 1557 0 2 "" 1780854566_A,1782681169_A nsv461997 5 18712631 18732591 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538298 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00689 dgv336n21 5 18712631 18774054 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv523077,nsv524117 M 2026 0 2 "" nsv524375 5 18828325 18830805 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700287 S 2026 0 1 "" nsv461999 5 18834802 18903535 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538300 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00169 nsv525528 5 18888158 19000599 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701663 S 2026 0 1 "" nsv328512 5 18909070 18910604 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347090 M 24 "" nsv7369 5 18943383 26686481 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10441 S 9 0 0 "" NA18956 nsv4750 5 18953946 18987227 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4822 S 9 1 0 "" NA19129 nsv830221 5 19000539 19174493 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444277 S 95 0 1 "" nsv462000 5 19021859 19273462 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538301 S 1557 0 1 "" NINDS_91 nsv462001 5 19042979 19095543 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538302 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01019 dgv1774e1 5 19066044 19245996 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv348,essv3561 M 271 0 0 "" NA18965 nsv527109 5 19213222 19276640 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703491 S 2026 0 1 "" nsv830222 5 19221626 19398945 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444278 S 95 1 0 "" nsv4751 5 19232410 19280609 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9658 S 9 0 1 "" NA18507 nsv441942 5 19264698 19267049 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv830223 5 19274658 19454952 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444279 S 95 0 1 "" nsv441943 5 19315328 19323214 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv10675 5 19410189 19412365 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14593,nssv13016,nssv15390,nssv13474,nssv13739,nssv14691,nssv12455,nssv14517,nssv15323,nssv12782,nssv13345,nssv12907,nssv12945,nssv14834,nssv12682,nssv13160,nssv12139,nssv13338,nssv12341,nssv12887 M 31 15 5 Samples from several populations that are part of the HapMap project. "" NA07029,NA10839,NA10847,NA11830,NA12872,NA18504,NA18517,NA18537,NA18563,NA18564,NA18572,NA18853,NA18860,NA18942,NA18972,NA18980,NA19007,NA19132,NA19173,NA19221 nsv471741 5 19411052 19412164 CNV Loss Hinds et al 2006 16327809 Oligo_aCGH,PCR Custom Perlegen arrays nssv646022 M 1.156 95 "" nsv4752 5 19485627 19518746 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4823 S 9 1 0 "" NA19129 nsv328677 5 19502114 19502175 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347255 M 24 "" nsv327508 5 19502176 19502237 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346086 M 24 "" nsv462002 5 19558926 19597571 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538303 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00910 nsv830224 5 19581959 19758529 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444281,nssv1444280,nssv1444282 M 95 0 3 "" nsv328739 5 19885593 19885646 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347317 M 24 "" nsv518192 5 19997357 20005983 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695616 S 2026 0 1 "" nsv4753 5 20230422 20263608 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8079 S 9 1 0 "" NA12156 nsv830225 5 20396666 20592875 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444299,nssv1444289,nssv1444302,nssv1444300,nssv1444301,nssv1444283,nssv1444287,nssv1444285,nssv1444286,nssv1444290,nssv1444298,nssv1444291,nssv1444293,nssv1444294,nssv1444297,nssv1444292,nssv1444288 M 95 1 16 "" nsv518092 5 20442822 20455966 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695504 S 2026 0 1 "" nsv10676 5 20454382 20464868 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14547,nssv14864 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18517,NA19132 nsv516609 5 20455226 20455966 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv658896,nssv656811,nssv669519 M 2026 0 3 "" nsv525360 5 20465089 20474012 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701479 S 2026 1 0 "" nsv520215 5 20465089 20479457 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697285 S 2026 0 1 "" nsv509962 5 20469827 20475827 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622083 S 4 0 1 "" NA10860 dgv1775e1 5 20472731 20475648 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv8695,essv13381,essv8072 M 271 0 0 "" NA18912,NA19159,NA19161 dgv1776e1 5 20472731 20494555 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv13498,esv1360,essv9584 M 271 0 0 "" NA18501,NA18914 nsv441944 5 20472958 20480059 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv517689 5 20474012 20479457 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv693071,nssv667410,nssv663904,nssv671789,nssv675738,nssv685002,nssv690110,nssv652845,nssv696387,nssv656865,nssv693918,nssv673799 M 2026 0 12 "" nsv818327 5 20474012 20502121 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416729,nssv1416727 M 112 0 2 "" NA19159,NA19161 nsv471628 5 20499136 20677549 CNV Loss Sharp et al 2005 15918152 BAC_aCGH,FISH Eichler Segmental Duplication BAC array nssv549782,nssv549781,nssv549780 M 48 0 3 "" NA10469,NA10492,NA10496 nsv4754 5 20531026 20556098 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8080 S 9 1 0 "" NA12156 nsv327301 5 20537402 20537461 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv345879 M 24 "" nsv329335 5 20609740 20609801 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347913 M 24 "" nsv830227 5 20682261 20793419 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444303 S 95 1 0 "" nsv528936 5 20683492 20686228 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705627 S 2026 0 1 "" nsv521254 5 20683492 20814805 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697870 S 2026 0 1 "" nsv507235 5 20838109 20844109 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620285,nssv617663,nssv621779 M 4 3 0 "" CHM,NA10860,NA15510 nsv519714 5 21054584 21475697 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694343 S 2026 0 1 "" nsv520196 5 21083744 21247195 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697274 S 2026 0 1 "" nsv462005 5 21163415 21230492 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538304 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00909 dgv1777e1 5 21184910 21371517 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv10479,essv16496,essv10369,essv2203,essv14588,essv21675,essv10163,essv11655,essv18858,essv13043,essv21041,essv6660,essv18123,essv21522,essv12552,essv24388,essv16074,essv9011 M 271 0 0 "" NA06991,NA11993,NA12248,NA12707,NA12751,NA12873,NA18501,NA18515,NA18608,NA18852,NA18960,NA19093,NA19098,NA19130,NA19132,NA19154,NA19210,NA19222 dgv1778e1 5 21184910 21634747 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv18197,essv18946,essv23072,essv15128,essv22958,essv19983,essv22128,essv10789,essv9191,essv23972,essv19394,essv24855,essv17655,essv2788,essv19925,essv21183,essv16339,essv17515,essv15304,essv19524,essv19197,essv2317,essv18432,essv7412,essv21307,essv20678,essv23211,essv20621,essv17452,essv17238,essv18707,essv22208,essv21282 M 271 0 0 "" NA07000,NA07048,NA07056,NA07357,NA10855,NA10857,NA11830,NA11831,NA11840,NA11881,NA12005,NA12043,NA12044,NA12057,NA12156,NA12716,NA12762,NA12812,NA12813,NA12864,NA12865,NA12874,NA12878,NA12892,NA18503,NA18523,NA18623,NA18862,NA18940,NA18987,NA19128,NA19129,NA19193 dgv1779e1 5 21184910 21748947 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv134,essv22547 M 271 0 0 "" NA07348 nsv509056 5 21224319 21243551 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620813 S 4 1 0 "" NA15510 nsv510914 5 21224319 21249510 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618645 S 4 0 0 "" CHM nsv4756 5 21238791 21265262 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2688,nssv3335,nssv456 M 9 3 0 "" NA12878,NA18555,NA19240 nsv830228 5 21248643 21447642 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444308,nssv1444317,nssv1444323,nssv1444336,nssv1444312,nssv1444335,nssv1444316,nssv1444332,nssv1444322,nssv1444338,nssv1444319,nssv1444337,nssv1444304,nssv1444305,nssv1444320,nssv1444321,nssv1444306,nssv1444327,nssv1444328,nssv1444310,nssv1444324,nssv1444311,nssv1444326,nssv1444325,nssv1444309,nssv1444315,nssv1444331,nssv1444334,nssv1444314,nssv1444339,nssv1444333,nssv1444313,nssv1444330 M 95 33 0 "" nsv527297 5 21269945 21270729 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703714 S 2026 0 1 "" nsv469877 5 21274736 21441545 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649898 M 265 17 1 Samples from several populations that are part of the HapMap project. "" nsv471629 5 21274737 21441545 CNV Gain+Loss Sharp et al 2005 15918152 BAC_aCGH,FISH Eichler Segmental Duplication BAC array nssv551130,nssv551122,nssv551125,nssv551123,nssv551127,nssv551124,nssv551128,nssv551121,nssv551120,nssv551129,nssv551126 M 48 10 1 "" JK1058,JK1061,JK776,NA10469,NA10470,NA10496,NA11323,NA15725,NA15729,NA15733,NA17017 nsv471742 5 21286334 21288443 CNV Loss Hinds et al 2006 16327809 Oligo_aCGH,PCR Custom Perlegen arrays nssv646023 M 0.125 95 "" nsv10677 5 21306668 21428394 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14623,nssv12220,nssv14894,nssv12485,nssv12812,nssv14924,nssv14108,nssv14577,nssv13599,nssv12937,nssv12666,nssv13504 M 31 8 3 Samples from several populations that are part of the HapMap project. "" NA07029,NA10839,NA10847,NA10863,NA11830,NA12155,NA12740,NA12802,NA18504,NA18517,NA19132 nsv821642 5 21330410 21391298 CNV Gain Sebat_et_al_2004 15273396 ROMA Custom Nimblegen photoprint 85000 probe ROMA oligo array nssv1421389 S 31 1 0 "" nsv830229 5 21370975 21565858 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444343,nssv1444342,nssv1444341 M 95 3 0 "" dgv1780e1 5 21421490 21634747 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv8827,essv1747,essv4376,essv8144,essv20906,essv341,essv10067,essv23581,essv10816,essv16798,essv17895,essv12206,essv16703,essv58,essv15485,essv11244 M 271 0 0 "" NA12003,NA12006,NA12801,NA18505,NA18508,NA18573,NA18871,NA18872,NA18971,NA18991,NA18997,NA19099,NA19101,NA19142,NA19204,NA19206 dgv337n21 5 21468201 21475697 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv521246,nsv523987 M 2026 0 2 "" nsv10678 5 21468716 21476175 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15420 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19221 esv32870 5 21473394 21475995 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99862 S 51 0 1 "" 22086 nsv469826 5 21477853 21648368 CNV Gain Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649847 M 265 2 0 Samples from several populations that are part of the HapMap project. "" nsv4757 5 21479901 21526476 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5986 S 9 0 1 "" NA12156 nsv10679 5 21480817 21488908 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15480,nssv12371,nssv14954,nssv12976,nssv14721,nssv12515,nssv13368,nssv12712,nssv12842,nssv13981,nssv13046,nssv12917,nssv12169,nssv14653 M 31 0 14 Samples from several populations that are part of the HapMap project. "" NA07029,NA10847,NA12872,NA18504,NA18517,NA18552,NA18563,NA18564,NA18572,NA18860,NA18942,NA19007,NA19221,NA19240 nsv469821 5 21484252 21649982 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649842 M 265 0 0 Samples from several populations that are part of the HapMap project. "" esv33880 5 21485973 21487886 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98921,essv100695,essv96897,essv93138,essv97442,essv93711,essv96601,essv93427,essv97643 M 51 1 8 "" 21606,21656,21817,21863,21879,21972,22011,22128,22278 nsv469672 5 21493963 21634747 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649602 M 265 11 0 Samples from several populations that are part of the HapMap project. "" dgv1781e1 5 21493964 21634747 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv841,essv10156,essv10290,essv21388,essv21008 M 271 0 0 "" NA06991,NA12740,NA18506,NA18973,NA19130 nsv4758 5 21505095 21520832 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3336,nssv10443,nssv9659,nssv10442,nssv9406,nssv4824,nssv5987,nssv457 M 9 7 0 "" NA12156,NA12878,NA18507,NA18517,NA18956,NA19129,NA19240 nsv509057 5 21512552 21512552 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623439 S 4 1 0 "" NA18994 nsv10680 5 21513105 21533694 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13006,nssv12250,nssv14138,nssv15510,nssv13629,nssv15353,nssv14607,nssv12696 M 31 0 8 Samples from several populations that are part of the HapMap project. "" NA10863,NA12155,NA12740,NA12802,NA18552,NA18972,NA19132,NA19221 nsv4759 5 21522041 21549078 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv11102,nssv9660,nssv458,nssv10445,nssv11100,nssv10444,nssv2511,nssv4825 M 9 6 0 "" NA15510,NA18507,NA18555,NA18956,NA19129,NA19240 nsv267 5 21522510 21523359 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv267 S 1 1 0 "" NA15510 nsv268 5 21527860 21529394 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv268 S 1 1 0 "" NA15510 nsv10681 5 21538825 21557743 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12726,nssv13563,nssv12975,nssv13036,nssv12872,nssv14168 M 31 5 1 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10863,NA12155,NA18537,NA18552 nsv526440 5 21642274 21649635 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702743 S 2026 0 1 "" nsv10682 5 21646672 21652813 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14472,nssv12545 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA10847,NA18502 dgv192n6 5 21687326 21687663 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv329864,nsv329089 M 24 "" nsv462008 5 21691832 21723134 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538306 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01239 nsv4760 5 21719593 21753115 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2689 S 9 1 0 "" NA18555 dgv1782e1 5 21814498 21999576 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1244,essv13859 M 271 0 0 "" NA18854,NA18995 dgv1783e1 5 21814498 22199675 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv7349,essv7006,essv24464,essv5184,essv22230,essv660,essv20317,essv19163,essv18207,essv5410,essv18373,essv21213,essv552,essv10757,essv24364,essv21261,essv22575,essv2521,essv23396,essv1375,essv21817,essv10847,essv7096,essv7747,essv24779,essv23260,essv13580,essv22121,essv13103,essv18629,essv15315,essv23795,essv21506,essv23209,essv15116,essv1489,essv6774,essv21014,essv20153,essv4084,essv19442,essv17654,essv24839,essv23007,essv4619,essv22490,essv19673,essv18446,essv2069,essv4555,essv19933,essv24576,essv21721,essv18137,essv17499,essv9821,essv19582,essv18708,essv20008,essv1626,essv7404,essv22928,esv217,essv225,essv20662,essv18921,essv122,essv6674,essv14724,essv20630,essv16036,essv4751,essv2224,essv17420,essv3949 M 271 0 0 "" NA06991,NA07000,NA07029,NA07048,NA07056,NA07348,NA07357,NA10854,NA10855,NA10857,NA10860,NA11830,NA11831,NA11832,NA11839,NA11840,NA11881,NA11882,NA11992,NA11993,NA12005,NA12043,NA12044,NA12056,NA12057,NA12156,NA12234,NA12236,NA12248,NA12249,NA12264,NA12707,NA12762,NA12763,NA12812,NA12813,NA12864,NA12865,NA12873,NA12874,NA12892,NA18501,NA18523,NA18524,NA18537,NA18542,NA18562,NA18563,NA18570,NA18594,NA18608,NA18611,NA18612,NA18620,NA18623,NA18635,NA18852,NA18862,NA18863,NA18871,NA18942,NA18948,NA18949,NA18960,NA18968,NA18970,NA18975,NA18980,NA18998,NA19003,NA19007,NA19127,NA19129,NA19159 nsv328954 5 21869405 21869405 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347532 M 24 "" nsv10684 5 21869771 21873737 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14683 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18504 nsv10685 5 21886585 21892218 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15540,nssv14811 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18860,NA19221 nsv830230 5 21907045 22076628 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444344,nssv1444345 M 95 2 0 "" dgv1784e1 5 21945833 22199675 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv9257,essv11156 M 271 0 0 "" NA19128,NA19211 nsv327326 5 21956557 21959024 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv345904 M 24 "" nsv4761 5 21962652 21994021 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2512 S 9 1 0 "" NA18555 nsv10686 5 21970438 22051543 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12575,nssv12280,nssv13005,nssv12742,nssv12902,nssv14198,nssv13066,nssv14984,nssv12786,nssv13659,nssv13534 M 31 9 2 Samples from several populations that are part of the HapMap project. "" NA07029,NA10839,NA10847,NA10863,NA12155,NA12740,NA12802,NA18517,NA18537,NA18552,NA18942 nsv471371 5 21971361 22051302 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548145,nssv548122,nssv548134 M 3 "" nsv329065 5 21974618 21978223 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347643 M 24 "" nsv830231 5 21991933 22193308 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444346 S 95 1 0 "" esv33296 5 22085720 22160425 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99819 S 51 1 0 "" 22086 nsv10687 5 22160580 22167860 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12605,nssv12967,nssv13689,nssv12816,nssv13564,nssv15014,nssv12932 M 31 7 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA10839,NA10847,NA10863,NA11830,NA12740,NA18517 nsv462009 5 22342957 22507055 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538307 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00133 nsv507236 5 22425891 22431891 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621780 S 4 1 0 "" NA10860 nsv507237 5 22446404 22452404 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620286,nssv617664,nssv621781,nssv622926 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 esv2752064 5 22505589 22735349 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6985993,essv6985994,essv6985995,essv6990176 M 771 0 1 "" SPC_99 nsv327838 5 22524942 22525555 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346416 M 24 "" nsv830232 5 22641384 22833632 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444347 S 95 1 0 "" dgv338n21 5 22769276 22787105 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv524936,nsv525897 M 2026 2 0 "" nsv830233 5 22783286 22929763 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444348 S 95 0 1 "" nsv509963 5 22822789 22828789 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623974 S 4 0 1 "" NA18994 nsv327318 5 22832368 22832685 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv345896 M 24 "" nsv327391 5 22872108 22875218 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv345969 M 24 "" nsv830234 5 23087589 23262939 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444349 S 95 0 1 "" nsv4762 5 23119087 23153751 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3337 S 9 1 0 "" NA12878 nsv462011 5 23278442 23299503 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538308 S 1557 0 1 "" NINDS_125 nsv462012 5 23279157 23314979 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538309 S 1557 0 1 "" 1780862310_A nsv527591 5 23299503 23309962 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704052 S 2026 0 1 "" dgv1785e1 5 23324344 23340668 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv12948,esv880 M 271 0 0 "" NA19102 nsv519908 5 23832229 24231564 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697118 S 2026 0 1 "" nsv327536 5 23946180 23946465 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346114 M 24 "" nsv4763 5 24000834 24006686 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2690 S 9 1 0 "" NA18555 nsv524893 5 24066569 24108374 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700899 S 2026 1 0 "" nsv515927 5 24086971 24108374 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv685106,nssv671156,nssv658693,nssv665341 M 2026 0 4 "" nsv830235 5 24229944 24420607 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444350 S 95 0 1 "" nsv4764 5 24384588 24403800 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2513 S 9 0 1 "" NA18555 nsv508351 5 24405198 24409706 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619953 S 4 0 1 "" NA15510 dgv193n6 5 24406285 24409208 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv327332,nsv327151 M 24 "" nsv830236 5 24423552 24600486 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444352 S 95 0 1 "" nsv329021 5 24488597 24488918 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347599 M 24 "" dgv1786e1 5 24564081 24613895 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv7915,esv1092 M 271 0 0 "" NA19239 nsv4765 5 24665098 24695161 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10446 S 9 1 0 "" NA18956 nsv436982 5 24810920 24827137 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv466863 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA10854 nsv4767 5 24950240 24995172 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8081 S 9 0 1 "" NA12156 nsv507238 5 24990291 24996291 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622927,nssv621782,nssv617665,nssv620287 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv528718 5 25122390 25411554 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705368 S 2026 1 0 "" nsv462014 5 25338740 25426838 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538310 S 1557 0 1 "" 1798860592_A nsv830238 5 25467118 25653602 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444353 S 95 0 1 "" nsv327988 5 25515847 25516058 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346566 M 24 "" nsv525325 5 25557042 25573172 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701435 S 2026 0 1 "" nsv462015 5 25557042 25608058 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538311 S 1557 0 1 "" 1780854576_A nsv516358 5 25579023 25581639 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv679093,nssv667758 M 2026 0 2 "" nsv830239 5 25632061 25835418 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444354 S 95 0 1 "" nsv818328 5 25735873 25753264 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417449 S 112 0 1 "" NA06985 nsv328663 5 25813064 25813387 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347241 M 24 "" nsv523374 5 25818329 25826344 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699123 S 2026 0 1 "" nsv528626 5 25855082 25883734 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705256 S 2026 1 0 "" nsv525932 5 25905847 25914456 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702138 S 2026 1 0 "" nsv328897 5 25930048 25937147 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347475 M 24 "" nsv830240 5 25932523 26126952 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444356,nssv1444355 M 95 0 2 "" nsv441945 5 26027946 26034694 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv521007 5 26028214 26036310 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv687335,nssv690273,nssv679738,nssv686317 M 2026 0 4 "" nsv523377 5 26028214 26049058 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699126 S 2026 0 1 "" nsv462018 5 26028214 26092874 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538313 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00023 nsv328658 5 26031983 26035390 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347236 M 24 "" nsv818329 5 26049058 26064146 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415898 S 112 1 0 "" NA10861 nsv830241 5 26098550 26251714 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444357 S 95 1 0 "" nsv329449 5 26146944 26147269 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv348027 M 24 "" nsv518770 5 26246320 26259798 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696220 S 2026 0 1 "" nsv818330 5 26273890 26314671 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417864 S 112 1 0 "" NA18852 nsv10688 5 26404571 26769798 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14011 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19240 nsv329215 5 26420613 26420663 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347793 M 24 "" nsv522518 5 26556619 26559245 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705887 S 2026 0 1 "" nsv462021 5 26576073 28513729 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538314 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01255 dgv1787e1 5 26791054 26970598 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv163,essv19995 M 271 0 0 "" NA07048 nsv4768 5 26797447 26846056 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3338,nssv5988,nssv4826 M 9 0 3 "" NA12156,NA12878,NA19129 nsv10689 5 26812294 26817225 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15570 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19221 nsv10690 5 26829009 26838408 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14841,nssv12310,nssv12401,nssv15383,nssv15600,nssv13593,nssv12199,nssv15074,nssv13027,nssv13408,nssv13719,nssv14041,nssv12947,nssv13799,nssv12962,nssv14071,nssv13035,nssv13076,nssv13126,nssv13190,nssv14228,nssv13468,nssv14637,nssv14871,nssv15044,nssv13314,nssv12846,nssv12997 M 31 15 8 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10863,NA11830,NA12155,NA12740,NA12802,NA12872,NA18517,NA18537,NA18552,NA18563,NA18572,NA18853,NA18860,NA18972,NA18975,NA19007,NA19132,NA19144,NA19173,NA19221,NA19240 nsv462023 5 26908493 26955104 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538315 S 1557 0 1 "" 1782681091_A nsv462024 5 26910398 26936660 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538316 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00023 nsv328711 5 27169873 27169873 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347289 M 24 "" nsv522387 5 27234790 27244464 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695166 S 2026 0 1 "" nsv527965 5 27437692 27454644 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704476 S 2026 0 1 "" nsv818331 5 27545807 27561817 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415643,nssv1415644 M 112 0 2 "" NA10835,NA12249 nsv509964 5 27558812 27564812 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618202 S 4 0 1 "" CHM nsv517157 5 27559097 27561817 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv663975,nssv703028,nssv690138,nssv662390,nssv665058,nssv690007,nssv686147,nssv677072,nssv651992,nssv680603,nssv690577,nssv679862,nssv693217,nssv680681,nssv680159,nssv655245,nssv672229,nssv690616,nssv671360,nssv683008,nssv674283,nssv669730,nssv686568,nssv651872,nssv665342,nssv686665,nssv678778,nssv657009,nssv667324,nssv678540,nssv675008,nssv674481,nssv689492,nssv674375,nssv686298,nssv663430,nssv664487,nssv679813,nssv658601,nssv688641,nssv655919,nssv689863,nssv679983,nssv662893,nssv687676,nssv703500,nssv660082,nssv682870,nssv678974,nssv690372,nssv656480,nssv691195,nssv670569,nssv677225,nssv666979,nssv688507,nssv666599,nssv673455,nssv653439,nssv687706,nssv663499,nssv658100,nssv660572,nssv672574,nssv667805,nssv657877,nssv673690,nssv659691,nssv658918,nssv653413,nssv652080,nssv685608,nssv689152,nssv668186,nssv687137,nssv678702,nssv684155,nssv681943,nssv671028,nssv660522,nssv659147,nssv661784,nssv689590,nssv666724,nssv691270,nssv682116,nssv677284,nssv691397,nssv666378,nssv675951,nssv660039,nssv655722,nssv653984,nssv672395,nssv654190,nssv689832,nssv692585,nssv654548,nssv652405,nssv688163,nssv687354,nssv658267,nssv671306,nssv654506,nssv672115,nssv657058,nssv681230,nssv679548,nssv655122,nssv657387,nssv691926,nssv653891,nssv655615,nssv652226,nssv657597,nssv670894,nssv668140,nssv660360,nssv686408,nssv661333,nssv660064,nssv689652,nssv657704 M 2026 0 123 "" nsv818332 5 27559097 27561817 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417560,nssv1417671,nssv1415955,nssv1415756 M 112 0 4 "" NA06991,NA06993,NA12750,NA12875 nsv471744 5 27560431 27562088 CNV Loss Hinds et al 2006 16327809 Oligo_aCGH,PCR Custom Perlegen arrays nssv646025 M 0.172 95 "" nsv818335 5 27560697 27561817 CNV Gain+Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418369,nssv1418068,nssv1418067,nssv1418371 M 112 1 3 "" NA10859,NA11882,NA12146,NA12239 nsv528814 5 27560697 27575247 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705488 S 2026 0 1 "" nsv522023 5 27560697 27595416 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694792 S 2026 0 1 "" nsv442942 5 27561143 27561777 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv526078 5 27647188 27648974 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702320 S 2026 0 1 "" nsv519139 5 27647188 27657934 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696617 S 2026 0 1 "" nsv507239 5 27766479 27772479 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622928,nssv621783,nssv620288 M 4 3 0 "" NA10860,NA15510,NA18994 nsv4769 5 27798169 27831412 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8082 S 9 1 0 "" NA12156 nsv462026 5 27966880 27988870 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538317 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00454 nsv528052 5 28009510 28009643 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704585 S 2026 0 1 "" nsv4770 5 28201814 28264194 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9407,nssv8084 M 9 0 2 "" NA12156,NA18517 nsv442943 5 28254644 28258446 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv4771 5 28280318 28313407 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4827 S 9 0 1 "" NA19129 nsv329733 5 28392714 28393001 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv348311 M 24 "" nsv327825 5 28413752 28413752 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346403 M 24 "" nsv507240 5 28509613 28515613 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617666,nssv622929 M 4 2 0 "" CHM,NA18994 nsv830242 5 28525238 28695999 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444358 S 95 1 0 "" nsv4772 5 28548554 28565694 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8085 S 9 0 1 "" NA12156 dgv694n27 5 28799409 28909870 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv462033,nsv462029 M 1557 0 2 "" HGDP00933,NINDS_222 nsv509965 5 28805239 28811239 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621258 S 4 0 1 "" NA15510 nsv4773 5 28809993 28844182 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8086 S 9 1 0 "" NA12156 nsv818336 5 28815114 28851719 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416730 S 112 0 1 "" NA19159 dgv695n27 5 28828470 28888873 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv462032,nsv462031 M 1557 0 2 "" HGDP00926,HGDP00932 nsv462034 5 28828470 28912873 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538323 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00684 dgv696n27 5 28842013 28909870 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv462075,nsv462036,nsv462044,nsv462040,nsv462035,nsv462038 M 1557 0 6 "" 1780862470_A,1798860072_A,HGDP01238,NINDS_146,NINDS_223,NINDS_245 dgv697n27 5 28842013 28938583 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv462071,nsv462046 M 1557 0 2 "" NINDS_142,NINDS_189 nsv517060 5 28846136 28851719 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv679863,nssv653707,nssv674513,nssv655435,nssv652406,nssv652827 M 2026 0 6 "" nsv518589 5 28847546 28860345 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696035 S 2026 1 0 "" nsv818337 5 28847546 28906260 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415837 S 112 1 0 "" NA10860 nsv329735 5 28849334 28849586 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv348313 M 24 "" nsv818338 5 28851719 28888873 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416344,nssv1416345 M 112 0 2 "" NA18855,NA18857 nsv525121 5 28874857 28906260 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701189 S 2026 0 1 "" nsv830243 5 28919826 29098561 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444359 S 95 1 0 "" nsv523085 5 28991556 29181412 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698777 S 2026 0 1 "" nsv4774 5 29083536 29115576 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4828,nssv10447,nssv5989,nssv459,nssv3339 M 9 5 0 "" NA12156,NA12878,NA18956,NA19129,NA19240 nsv269 5 29101002 29113876 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv269 S 1 1 0 "" NA15510 nsv509060 5 29102763 29108107 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618038,nssv619414,nssv623440,nssv620816 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv10691 5 29107170 29108928 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15630 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19221 nsv525210 5 29212286 29230629 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701292 S 2026 0 1 "" nsv462083 5 29290331 29363668 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538337 S 1557 0 1 "" 1782681024_A dgv194n6 5 29304501 29304576 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv329654,nsv329161 M 24 "" nsv526816 5 29337526 29349199 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703170 S 2026 1 0 "" nsv328368 5 29382473 29382523 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346946 M 24 "" nsv433370 5 29456116 29497730 CNV Gain Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463251 S 9 1 0 Samples from several populations that are part of the HapMap project. "" NA12878 nsv818339 5 29462349 29497730 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418452 S 112 0 1 "" NA19193 nsv523030 5 29614881 29656027 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698713 S 2026 0 1 "" nsv818340 5 29631893 29647646 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416927,nssv1416929 M 112 0 2 "" NA19137,NA19139 nsv818341 5 29631893 29656027 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418453,nssv1418147 M 112 0 2 "" NA19143,NA19193 nsv441946 5 29661075 29670917 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv830244 5 29665879 29826368 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444360 S 95 0 1 "" nsv462086 5 29824988 29829994 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538339 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01033 nsv521010 5 30278351 30293399 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697734 S 2026 0 1 "" nsv462087 5 30443443 30536021 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538340 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00926 nsv507241 5 30483452 30489452 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622930,nssv620290 M 4 2 0 "" NA15510,NA18994 nsv4775 5 30513978 30550540 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv460 S 9 0 1 "" NA19240 nsv328193 5 30554014 30554014 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346771 M 24 "" nsv830245 5 30814851 30976270 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444363,nssv1444361 M 95 1 1 "" dgv339n21 5 30879596 30952790 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv525028,nsv527171 M 2026 0 2 "" nsv830246 5 30891484 30943899 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444364 S 95 1 0 "" nsv462088 5 30942738 30969332 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538341 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00088 nsv327493 5 30965265 30965265 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346071 M 24 "" nsv830247 5 31083501 31256846 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444365 S 95 1 0 "" nsv329333 5 31124688 31124688 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347911 M 24 "" dgv1788e1 5 31332034 31505885 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2532,esv131 M 271 0 0 "" NA19003 nsv830249 5 31404845 31579045 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444366 S 95 1 0 "" nsv517653 5 31427163 31427528 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv672330,nssv656150,nssv652672,nssv679601,nssv670254,nssv666566,nssv656414 M 2026 0 7 "" dgv340n21 5 31446063 31446385 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv526060,nsv520307 M 2026 0 2 "" nsv4776 5 31462311 31493745 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv461 S 9 1 0 "" NA19240 nsv518370 5 31724438 31732698 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695797 S 2026 0 1 "" nsv515637 5 31728633 31747186 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv664187,nssv677968 M 2026 0 2 "" nsv830250 5 31739010 31895411 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444367 S 95 1 0 "" nsv327837 5 31752437 31760236 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346415 M 24 "" nsv327480 5 31787955 31788445 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346058 M 24 "" nsv515692 5 31814725 31823138 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv670721,nssv662026,nssv685521,nssv664437,nssv686686 M 2026 5 0 "" dgv1789e1 5 32047775 32239257 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv21689,esv646 M 271 0 0 "" NA12248 nsv830251 5 32078901 32239209 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444368 S 95 0 1 "" essv2103 5 32137157 32185000 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18959 dgv698n27 5 32137157 32205304 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv462100,nsv462107,nsv462104,nsv462099,nsv462091,nsv462096,nsv462111,nsv462105,nsv462094,nsv462109,nsv462103,nsv462090,nsv462102,nsv462093,nsv462108,nsv462092,nsv462110,nsv462089,nsv462097,nsv462098,nsv462101 M 1557 21 0 "" HGDP00001,HGDP00025,HGDP00029,HGDP00351,HGDP00519,HGDP00597,HGDP00750,HGDP00755,HGDP00884,HGDP01147,HGDP01156,HGDP01184,HGDP01187,HGDP01191,HGDP01212,HGDP01246,HGDP01247,HGDP01340,HGDP01349,HGDP01356,HGDP01401 dgv1790e1 5 32137157 32213541 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv23309,essv18814 M 271 0 0 "" NA12248,NA12264 nsv517387 5 32137157 32225097 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv689249,nssv675818,nssv665343,nssv692617,nssv659254,nssv666703,nssv673070,nssv651993,nssv677310,nssv679681,nssv689430,nssv683810,nssv670293,nssv683367,nssv676452,nssv692921,nssv665298,nssv682711,nssv686508,nssv657727,nssv664903,nssv685781,nssv651873,nssv673833,nssv670079 M 2026 25 0 "" dgv201e55 5 32137157 32232146 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv34513,esv34731,esv35127,esv2752066 M 771 4 0 "" NA12248,NA18562,NA18632,SPC_34 esv33235 5 32142588 32203365 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv94468,essv94600,essv98639 M 51 3 0 "" 21808,21932,22085 nsv441947 5 32142837 32194212 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv54n64 5 32142841 32181714 CNV Gain Wang_et_al_2007 17921354 SNP_array nsv818342,nsv818343 M 112 3 0 "" NA12248,NA12264,NA18951 dgv202e55 5 32149900 32185000 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv35103,esv2752067 M 771 2 0 "" BEC_382,NA18951 dgv203e55 5 32149900 32295940 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv2752068,esv2752069,esv2752070 M 771 3 0 "" BEC_175,BEC_333,BEC_588 dgv1791e1 5 32152371 32185000 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv7654,essv2416 M 271 0 0 "" NA18632,NA18951 nsv328059 5 32193869 32193869 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346637 M 24 "" dgv1792e1 5 32281118 32774401 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv66,essv10136 M 271 0 0 "" NA19130 nsv10692 5 32295082 32299225 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13398,nssv13136,nssv13344 M 31 0 3 Samples from several populations that are part of the HapMap project. "" NA18564,NA18975,NA19007 nsv10693 5 32347179 32350337 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13779,nssv12992 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA12740 nsv4778 5 32543182 32577300 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3340 S 9 1 0 "" NA12878 nsv329796 5 32607280 32607280 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv348374 M 24 "" nsv527979 5 32650257 32657243 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704496 S 2026 0 1 "" nsv10695 5 32688276 32719136 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14667 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19132 nsv329020 5 32746738 32751209 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347598 M 24 "" nsv329971 5 32747435 32750367 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv348549 M 24 "" nsv520364 5 32762394 32763441 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv681201,nssv663254 M 2026 0 2 "" nsv507242 5 32804579 32810579 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622931 S 4 1 0 "" NA18994 nsv521635 5 32949686 32959049 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698253 S 2026 0 1 "" nsv523429 5 33058895 33093023 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699184 S 2026 0 1 "" nsv328710 5 33147624 33148425 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347288 M 24 "" nsv4779 5 33172890 33181133 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8087 S 9 1 0 "" NA12156 nsv830252 5 33186038 33367387 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444369 S 95 1 0 "" nsv328212 5 33236617 33236928 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346790 M 24 "" nsv522715 5 33355020 34073737 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698345 S 2026 1 0 "" nsv328705 5 33391333 33391663 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347283 M 24 "" dgv699n27 5 33434957 33511557 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv462112,nsv462113 M 1557 2 0 "" HGDP01047,HGDP01057 nsv830253 5 33506188 33727121 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444370 S 95 0 1 "" nsv818344 5 33553984 33582189 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415758,nssv1415757 M 112 0 2 "" NA12865,NA12875 dgv1793e1 5 33557835 33584771 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv24607,esv1414,essv24451 M 271 0 0 "" NA12865,NA12875 nsv525683 5 33614950 33615152 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701841 S 2026 0 1 "" nsv4780 5 33659148 33689992 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3341,nssv2691 M 9 2 0 "" NA12878,NA18555 nsv509061 5 33667540 33676748 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620817,nssv623442 M 4 2 0 "" NA15510,NA18994 nsv509966 5 33702565 33708565 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622084,nssv623975,nssv618203 M 4 0 3 "" CHM,NA10860,NA18994 nsv327771 5 33724221 33724287 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346349 M 24 "" nsv830254 5 33737269 33926014 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444371 S 95 0 1 "" nsv4781 5 33829514 33853796 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3342 S 9 1 0 "" NA12878 nsv4782 5 33859998 33887847 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4829 S 9 1 0 "" NA19129 dgv22e24 5 33862690 33863503 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH esv2750711,esv2750503,esv2750519,esv2750572,esv2750576,esv2750604,esv2750644,esv2750654,esv2750678 M 51 9 0 "" 21791,21808,21817,21939,21944,22128,22217,22259,22275 esv33441 5 33872365 33872476 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93368 S 51 1 0 "" 22170 esv32546 5 33888558 33888681 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93239 S 51 1 0 "" 22170 nsv462114 5 33958315 33979974 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538366 S 1557 0 1 "" 1780854206_A nsv830255 5 33965369 34145022 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444372 S 95 0 1 "" nsv462115 5 33971700 34004647 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538367 S 1557 0 1 "" 1780854338_A nsv519240 5 33986460 34785173 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696733 S 2026 1 0 "" esv33876 5 33992948 33993116 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98915 S 51 0 1 "" 21606 esv32686 5 34021603 34024552 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99426 S 51 0 1 "" 22335 esv33890 5 34025329 34030505 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98789,essv99509 M 51 1 1 "" 21606,22335 nsv507243 5 34066120 34072120 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620291,nssv617667,nssv622932 M 4 3 0 "" CHM,NA15510,NA18994 nsv830256 5 34081988 34278541 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444376,nssv1444375,nssv1444374 M 95 3 0 "" dgv1794e1 5 34134806 34405626 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv19998,essv21247,essv2619,essv78,essv22160,essv16640,essv7408,essv9989,essv23176,essv22530,essv1466,essv17479,essv21313,essv12208,essv23020,essv24003,essv20177,essv24848,essv22927,essv4374,essv16989,esv446,essv16356,essv19967,essv18765,essv15331,essv2790,essv18113,essv18356,essv19511,essv10855,essv15111,essv16820,essv20653,essv23773,essv20578,essv18952,essv10760,essv17235,essv17462,essv22223 M 271 0 0 "" NA07000,NA07048,NA07056,NA07348,NA07357,NA10855,NA10857,NA11832,NA11993,NA11994,NA12005,NA12043,NA12044,NA12156,NA12716,NA12762,NA12763,NA12812,NA12813,NA12864,NA12874,NA12878,NA12892,NA18503,NA18523,NA18573,NA18623,NA18862,NA18871,NA18872,NA18944,NA18987,NA18990,NA18991,NA19099,NA19101,NA19129,NA19142,NA19144,NA19193 nsv469604 5 34134810 34296259 CNV Gain Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649720 M 265 8 0 Samples from several populations that are part of the HapMap project. "" nsv4783 5 34198079 34219701 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2515,nssv9661,nssv9408,nssv11103,nssv4830,nssv5990 M 9 6 0 "" NA12156,NA15510,NA18507,NA18517,NA18555,NA19129 dgv1795e1 5 34209763 34405626 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv17969,essv11232,essv6592,essv20249,essv15464,essv1739,essv8809,essv23252,essv8154,essv18195,essv20889,essv2470,essv6715,essv9708,essv15589,essv330 M 271 0 0 "" NA07029,NA12003,NA12057,NA12144,NA12801,NA18505,NA18508,NA18608,NA18621,NA18913,NA18971,NA18997,NA18999,NA19137,NA19204,NA19206 nsv830257 5 34209792 34371608 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444383,nssv1444377,nssv1444382,nssv1444381,nssv1444379,nssv1444380,nssv1444378,nssv1444387,nssv1444386,nssv1444385 M 95 10 0 "" nsv10696 5 34214196 34293762 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15164,nssv14697,nssv15413,nssv13065,nssv12340,nssv13498,nssv12906,nssv13156,nssv14258,nssv15134,nssv12635,nssv14713,nssv13809,nssv13220,nssv13839,nssv13022,nssv15194,nssv13052,nssv12936,nssv12876 M 31 7 10 Samples from several populations that are part of the HapMap project. "" NA07029,NA10847,NA10863,NA12155,NA12740,NA12802,NA18504,NA18517,NA18537,NA18552,NA18853,NA18972,NA19132,NA19144 nsv469798 5 34214321 34317822 CNV Gain Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649819 M 265 10 0 Samples from several populations that are part of the HapMap project. "" dgv1796e1 5 34214323 34296266 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv846,essv24655,essv3023,essv2652,essv15225,essv1886,essv8276,essv10915,essv16236,essv5471,essv24486,essv11049,essv13459,essv10133,essv21055,essv12752,essv1103,essv5563,essv10267 M 271 0 0 "" NA06991,NA11829,NA12802,NA18506,NA18529,NA18632,NA18914,NA18964,NA18967,NA18973,NA18976,NA18981,NA19094,NA19103,NA19130,NA19143,NA19161,NA19192,NA19209 nsv270 5 34217277 34218567 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv270 S 1 1 0 "" NA15510 nsv4784 5 34220223 34242262 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5991,nssv9662,nssv462,nssv3343,nssv11104,nssv10448,nssv3344,nssv9409,nssv4831,nssv2516 M 9 9 0 "" NA12156,NA12878,NA15510,NA18507,NA18517,NA18555,NA18956,NA19129,NA19240 nsv509062 5 34221433 34221433 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619415 S 4 1 0 "" NA10860 nsv271 5 34226014 34226756 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv271 S 1 1 0 "" NA15510 esv32602 5 34287383 34287414 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99053 S 51 1 0 "" 21938 dgv195n6 5 34340547 34343670 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv329382,nsv329862 M 24 "" nsv830258 5 34345340 34476037 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444388 S 95 1 0 "" nsv4785 5 34362254 34396968 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv463 S 9 1 0 "" NA19240 esv33649 5 34377110 34382850 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99199 S 51 1 0 "" 22275 nsv528066 5 34406288 34431629 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704602 S 2026 0 1 "" nsv516223 5 34425616 34445932 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv669392,nssv666905 M 2026 2 0 "" nsv462116 5 34425616 34490922 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538368 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00905 nsv830260 5 34580482 34800161 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444389 S 95 1 0 "" dgv196n6 5 34641677 34641744 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv329437,nsv329496 M 24 "" nsv4786 5 34691850 34720062 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5992 S 9 1 0 "" NA12156 nsv4787 5 34760274 34769639 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8088 S 9 1 0 "" NA12156 nsv522144 5 34814128 34934061 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694917 S 2026 0 1 "" nsv327644 5 34890982 34891091 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346222 M 24 "" nsv4789 5 34951752 34973073 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8089 S 9 0 1 "" NA12156 nsv4790 5 35126502 35159389 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8091 S 9 0 1 "" NA12156 nsv526901 5 35224233 35224972 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703261 S 2026 0 1 "" nsv327901 5 35226908 35227244 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346479 M 24 "" nsv327297 5 35231895 35231944 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv345875 M 24 "" nsv4791 5 35307724 35333303 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8092 S 9 0 1 "" NA12156 nsv4792 5 35415991 35450706 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv465 S 9 1 0 "" NA19240 nsv525477 5 35566662 35828747 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701605 S 2026 0 1 "" nsv525994 5 35613014 35635967 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702219 S 2026 0 1 "" nsv509064 5 35741947 35796915 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620819 S 4 1 0 "" NA15510 nsv515831 5 35742036 35759618 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv654413,nssv664929 M 2026 2 0 "" nsv507244 5 35745822 35751822 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621784,nssv622933,nssv617668 M 4 3 0 "" CHM,NA10860,NA18994 nsv329452 5 35788522 35788522 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv348030 M 24 "" nsv4793 5 35846027 35858052 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2517 S 9 1 0 "" NA18555 nsv830261 5 35898841 36053805 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444390 S 95 1 0 "" nsv4794 5 35942447 35969962 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8093 S 9 0 1 "" NA12156 esv32711 5 36083554 36181923 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100880 S 51 1 0 "" 21656 nsv830262 5 36110068 36329629 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444391 S 95 1 0 "" nsv4795 5 36141872 36186164 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8094 S 9 0 1 "" NA12156 nsv524991 5 36192539 36193572 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701020 S 2026 1 0 "" nsv524075 5 36192539 36194151 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699943 S 2026 0 1 "" nsv328071 5 36393133 36393323 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346649 M 24 "" nsv517278 5 36466512 36481559 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv692975,nssv654191 M 2026 0 2 "" nsv517187 5 36488228 36496219 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv692736,nssv668494,nssv653962,nssv671029,nssv673953 M 2026 0 5 "" nsv830263 5 36612261 36790850 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444392 S 95 1 0 "" nsv526573 5 36672573 36672974 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702890 S 2026 0 1 "" nsv528986 5 36725120 36727869 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705686 S 2026 0 1 "" nsv527961 5 36816808 36864487 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704471 S 2026 1 0 "" nsv525478 5 36839982 37385652 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701606 S 2026 0 1 "" nsv830264 5 36922759 36977251 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444393 S 95 0 1 "" nsv830265 5 37187978 37347990 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444394 S 95 0 1 "" nsv328371 5 37324628 37329864 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346949 M 24 "" nsv329973 5 37329557 37329887 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv348551 M 24 "" nsv329607 5 37619377 37619439 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv348185 M 24 "" nsv516350 5 37948752 37960996 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv667732,nssv678873 M 2026 0 2 "" nsv4796 5 38071925 38116277 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2518 S 9 0 1 "" NA18555 nsv442945 5 38180803 38184641 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv330192 5 38230193 38230193 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv348770 M 24 "" nsv4797 5 38263396 38296044 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2692 S 9 1 0 "" NA18555 nsv4798 5 38349379 38383583 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3345 S 9 1 0 "" NA12878 nsv515705 5 38349568 38349827 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv664488,nssv672486,nssv687058,nssv692879,nssv691236,nssv690246 M 2026 3 3 "" nsv518853 5 38349568 38361638 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696308 S 2026 1 0 "" nsv4800 5 38368483 38389984 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8095 S 9 0 1 "" NA12156 nsv516065 5 38527160 38578046 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694879,nssv661000,nssv674033,nssv665957 M 2026 4 0 "" nsv526152 5 38771041 38773640 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702411 S 2026 0 1 "" nsv4801 5 38864799 38896333 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv466 S 9 1 0 "" NA19240 nsv329682 5 38867933 38868048 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv348260 M 24 "" nsv327488 5 38903860 38903936 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346066 M 24 "" nsv529023 5 38991553 39155480 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705734 S 2026 0 1 "" nsv4802 5 39019637 39054067 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3346 S 9 1 0 "" NA12878 nsv528773 5 39030629 39031440 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705437 S 2026 0 1 "" nsv519072 5 39030629 39044671 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696544 S 2026 0 1 "" nsv818346 5 39030629 39044671 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418454 S 112 0 1 "" NA19193 nsv4803 5 39067393 39112091 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8096 S 9 0 1 "" NA12156 nsv4804 5 39126844 39161014 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2694 S 9 1 0 "" NA18555 nsv4805 5 39130957 39158451 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8097 S 9 0 1 "" NA12156 nsv516263 5 39339216 39346618 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv665344,nssv652686,nssv663221,nssv676453,nssv675970 M 2026 0 5 "" nsv327295 5 39459194 39459194 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv345873 M 24 "" nsv327367 5 39459197 39459197 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv345945 M 24 "" nsv462122 5 39660837 39673642 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538369 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01418 nsv437463 5 39841921 39865621 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467344 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18521 nsv518616 5 39848641 39849016 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696063 S 2026 0 1 "" nsv526930 5 39884646 39889373 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703297 S 2026 0 1 "" nsv509967 5 39906033 39912033 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621259 S 4 0 1 "" NA15510 nsv4806 5 39981833 40013728 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9663 S 9 0 1 "" NA18507 nsv830266 5 40059131 40213929 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444399,nssv1444398,nssv1444397,nssv1444396 M 95 1 3 "" nsv520373 5 40076044 40085676 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv675839,nssv663328,nssv689153 M 2026 0 3 "" nsv525668 5 40085676 40086058 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701825 S 2026 0 1 "" nsv818347 5 40086058 40091295 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415956 S 112 1 0 "" NA12750 nsv507245 5 40104147 40110147 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621785 S 4 1 0 "" NA10860 nsv830267 5 40174552 40228438 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444401,nssv1444411,nssv1444403,nssv1444404,nssv1444410,nssv1444402,nssv1444409,nssv1444412,nssv1444408,nssv1444400,nssv1444405 M 95 8 3 "" nsv528114 5 40224199 40225242 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704656 S 2026 0 1 "" nsv441948 5 40371232 40387303 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv507246 5 40515614 40521614 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620292,nssv621786,nssv622934,nssv617669 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv330004 5 40584058 40584137 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv348582 M 24 "" nsv507247 5 40598933 40604933 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617670,nssv621787,nssv620293,nssv622935 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv4807 5 40606557 40651536 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8098 S 9 0 1 "" NA12156 nsv328570 5 40836391 40836916 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347148 M 24 "" nsv518711 5 40863064 40871384 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696161 S 2026 0 1 "" dgv1797e1 5 40909835 41045039 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv4537,esv1302 M 271 0 0 "" NA18566 esv35077 5 40911600 41036428 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6988194,essv6988195,essv6979541,essv6979542,essv6979543 M 771 0 1 "" NA18566 nsv830268 5 40933118 41174123 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444413 S 95 1 0 "" nsv507248 5 41003118 41009118 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617671,nssv622936 M 4 2 0 "" CHM,NA18994 nsv526193 5 41089680 41090691 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702455 S 2026 0 1 "" nsv515813 5 41115602 41120483 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv664858,nssv669840 M 2026 0 2 "" nsv4808 5 41239011 41287742 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2519 S 9 0 1 "" NA18555 nsv830269 5 41244870 41429293 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444414 S 95 1 0 "" nsv462123 5 41265034 41270400 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538370 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01223 nsv516193 5 41265034 41277367 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv666705,nssv690578,nssv676644 M 2026 0 3 "" nsv441950 5 41267255 41277150 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv327751 5 41447688 41447771 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346329 M 24 "" nsv328702 5 41447757 41447844 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347280 M 24 "" nsv441951 5 41607070 41617270 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv818348 5 41608479 41615475 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417539,nssv1417636,nssv1417566 M 112 0 3 "" NA18971,NA18972,NA18992 nsv462124 5 41620836 41632026 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538371 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00664 nsv524669 5 41622162 41632026 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700638 S 2026 0 1 "" nsv818349 5 41622162 41632026 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417399 S 112 0 1 "" NA18951 nsv441952 5 41623028 41630861 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv328830 5 41635203 41635880 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347408 M 24 "" nsv4809 5 41669507 41679190 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8099 S 9 1 0 "" NA12156 nsv830271 5 41752284 41931467 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444415 S 95 0 1 "" nsv830272 5 41869122 42021924 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444416 S 95 1 0 "" nsv4811 5 41880279 41923110 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8100 S 9 0 1 "" NA12156 nsv830273 5 41903053 42101827 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444417 S 95 1 0 "" nsv327668 5 41937140 41945587 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346246 M 24 "" nsv462125 5 42054867 42228377 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538372 S 1557 0 1 "" 1782681195_A nsv507249 5 42055703 42061703 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620294 S 4 1 0 "" NA15510 nsv4812 5 42122297 42154972 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5993 S 9 1 0 "" NA12156 nsv4813 5 42193355 42237786 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5994 S 9 0 1 "" NA12156 nsv4814 5 42554492 42584402 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv467 S 9 1 0 "" NA19240 nsv462126 5 42764588 43272945 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538373 S 1557 1 0 "" 1788485590_A nsv523033 5 42787794 42955442 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698716 S 2026 1 0 "" nsv528880 5 42975987 43002972 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705560 S 2026 0 1 "" nsv515883 5 42985445 43002972 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv662776,nssv670787,nssv673351,nssv672538,nssv670080,nssv665136 M 2026 0 6 "" nsv4815 5 43009307 43041927 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3347 S 9 1 0 "" NA12878 nsv327225 5 43079902 43079902 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv345803 M 24 "" nsv830274 5 43131308 43261844 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444419 S 95 0 1 "" nsv508352 5 43273587 43426819 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618764 S 4 0 1 "" NA10860 esv33224 5 43290354 43290796 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101598,essv98918,essv97515,essv100775,essv94364,essv95688,essv93035,essv99063,essv96005,essv99586,essv98070,essv99210,essv98423,essv96307 M 51 0 14 "" 21603,21606,21616,21656,21808,21841,21863,21938,22127,22217,22259,22275,22352,22371 nsv830275 5 43505268 43675141 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444420 S 95 1 0 "" nsv830276 5 43987187 44186612 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444436,nssv1444435,nssv1444434,nssv1444421,nssv1444422,nssv1444424,nssv1444423,nssv1444433,nssv1444425,nssv1444430,nssv1444427,nssv1444426,nssv1444432,nssv1444431,nssv1444428 M 95 15 0 "" nsv330153 5 44315458 44317779 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv348731 M 24 "" nsv4816 5 44343102 44387769 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8101 S 9 0 1 "" NA12156 nsv830277 5 44419159 44602638 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444438,nssv1444437 M 95 2 0 "" nsv830278 5 44576620 44749069 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444439 S 95 0 1 "" nsv830279 5 44723932 44896572 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444441 S 95 1 0 "" nsv462127 5 44839506 44869990 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538374 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00805 nsv462129 5 44912045 44952546 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538375 S 1557 0 1 "" 1798860072_A nsv507250 5 44925834 44931834 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622937,nssv621788,nssv620295 M 4 3 0 "" NA10860,NA15510,NA18994 nsv508353 5 45032843 45062055 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617509 S 4 0 1 "" CHM nsv830280 5 45103530 45286514 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444444,nssv1444443,nssv1444442,nssv1444445 M 95 4 0 "" nsv462131 5 45339429 45445657 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538376 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01238 nsv462132 5 45361672 45506180 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538377 S 1557 0 1 "" NINDS_222 nsv4817 5 45370355 45403864 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4832 S 9 1 0 "" NA19129 nsv508354 5 45371755 45398576 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619954 S 4 0 1 "" NA15510 nsv462134 5 45400632 45492834 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538378 S 1557 0 1 "" 1780862470_A nsv830282 5 45454017 45609272 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444446 S 95 0 1 "" nsv525575 5 45515182 45948724 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701714 S 2026 1 0 "" nsv830283 5 45524430 45677670 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444447 S 95 1 0 "" nsv328726 5 45562729 45563228 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347304 M 24 "" nsv329097 5 45562930 45563429 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347675 M 24 "" nsv527612 5 45838908 45850032 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704077 S 2026 0 1 "" nsv830284 5 45883732 45985067 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444448 S 95 1 0 "" nsv462138 5 45892886 46322869 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538379 S 1557 1 0 "" 1780854532_A nsv517551 5 45894599 45912435 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv692364,nssv663060,nssv654086,nssv666768,nssv676240,nssv680176,nssv691825,nssv653751,nssv692976 M 2026 0 9 "" dgv341n21 5 45928545 46384240 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv525576,nsv526696 M 2026 2 0 "" dgv342n21 5 45938365 46111714 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv525143,nsv518712 M 2026 0 2 "" nsv517108 5 45948724 46032659 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv682611,nssv663959,nssv665523,nssv681344,nssv671307,nssv685358,nssv691490,nssv672874,nssv688666,nssv683598,nssv652052,nssv674881,nssv684769,nssv655795,nssv669201,nssv663500,nssv667451,nssv671242,nssv667829,nssv662591,nssv666927,nssv673541,nssv671652,nssv687969,nssv681857,nssv691033,nssv661426,nssv673691,nssv678152,nssv655568,nssv679480,nssv652673,nssv663135,nssv664322,nssv692497,nssv661884,nssv672638,nssv668219,nssv653798,nssv672059,nssv664172,nssv693581,nssv686650,nssv658723,nssv692679,nssv688270,nssv653392,nssv687415,nssv678202,nssv682913,nssv657261,nssv692335,nssv669979,nssv671593,nssv677777,nssv686608,nssv679094,nssv684035,nssv685212,nssv680359,nssv666423,nssv674034,nssv676699,nssv662455,nssv679056,nssv675180,nssv670661,nssv675032,nssv684232,nssv672816,nssv673319,nssv674482,nssv683245,nssv651750,nssv686534,nssv687034,nssv693671,nssv684283,nssv668460,nssv679120,nssv662086,nssv693966,nssv693704,nssv670255,nssv656553,nssv658216,nssv673211,nssv666219,nssv661640,nssv671722,nssv652906,nssv662058,nssv685496,nssv688231,nssv681171,nssv653063,nssv666834,nssv668517,nssv673096,nssv680863,nssv672270,nssv677102,nssv660942,nssv679325,nssv687532,nssv693072,nssv684579,nssv665826,nssv683388,nssv687504,nssv690458,nssv681978,nssv665461,nssv687455,nssv657623,nssv659758,nssv676760,nssv691126,nssv661501,nssv659840,nssv689318,nssv683060,nssv673258,nssv658029,nssv666354,nssv665908,nssv654232,nssv677159,nssv658682,nssv693389,nssv654678,nssv659618,nssv675647,nssv667159,nssv664741,nssv673910,nssv686586,nssv661747,nssv666161,nssv658460,nssv670517,nssv651791,nssv679285,nssv670175 M 2026 0 144 "" nsv522234 5 45948724 46084425 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695012 S 2026 1 0 "" nsv818350 5 45990384 46004619 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416347,nssv1415673,nssv1416346,nssv1415684,nssv1416931,nssv1418149,nssv1418150,nssv1416348,nssv1416732,nssv1416733,nssv1416731 M 112 0 11 "" NA18855,NA18856,NA18857,NA19137,NA19141,NA19142,NA19144,NA19145,NA19159,NA19160,NA19161 dgv700n27 5 45990384 46010638 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv462149,nsv462146,nsv462145,nsv462148,nsv462151,nsv462141,nsv462142,nsv462144,nsv462143,nsv462140,nsv462147 M 1557 0 11 "" HGDP00455,HGDP00464,HGDP00473,HGDP00475,HGDP00637,HGDP00726,HGDP00927,HGDP00931,HGDP00936,HGDP00943,HGDP01405 nsv818351 5 45990384 46032659 CNV Gain+Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416930,nssv1416543,nssv1417865 M 112 1 2 "" NA18852,NA19138,NA19173 dgv701n27 5 46084425 46322869 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv462152,nsv462153 M 1557 2 0 "" HGDP00222,HGDP00454 nsv469783 5 46191604 46392166 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649804 M 265 0 0 Samples from several populations that are part of the HapMap project. "" nsv517480 5 46196544 46384240 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv658694,nssv695385,nssv672383,nssv668021,nssv664763,nssv692618,nssv667734,nssv663405,nssv685913,nssv677661,nssv696686,nssv663657,nssv663501,nssv694560,nssv652144 M 2026 2 13 "" nsv433228 5 46197697 46264090 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463109 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA18517 nsv442946 5 46231640 46235192 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv508355 5 46283945 46335954 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618765 S 4 0 1 "" NA10860 nsv442947 5 46306765 46309259 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv830285 5 49481118 49563582 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444454,nssv1444453,nssv1444452,nssv1444450,nssv1444449,nssv1444455,nssv1444458,nssv1444457,nssv1444456 M 95 0 9 "" nsv516352 5 49618507 49622627 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv670740,nssv685914,nssv672384,nssv667735 M 2026 0 4 "" nsv523212 5 49633254 50093800 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698933 S 2026 1 0 "" nsv509968 5 49651505 49657505 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622086 S 4 0 1 "" NA10860 nsv4818 5 49683746 49697254 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8102 S 9 0 1 "" NA12156 nsv4819 5 49722120 49756193 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv468 S 9 1 0 "" NA19240 dgv1798e1 5 49784109 50093939 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1903,essv17756,esv331 M 271 0 0 "" NA10831,NA18976 nsv327840 5 49871686 49871755 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346418 M 24 "" nsv507251 5 49910516 49916516 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621789 S 4 1 0 "" NA10860 nsv10697 5 49921162 49922832 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13375 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18980 nsv818352 5 49993978 50053481 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416351,nssv1416349 M 112 0 2 "" NA18855,NA18857 nsv521214 5 50023777 50073138 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694261,nssv685256,nssv687456 M 2026 0 3 "" dgv702n27 5 50023777 50093800 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv462162,nsv462160 M 1557 0 2 "" HGDP00771,NINDS_142 nsv462163 5 50025458 50124074 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538398 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00664 nsv462164 5 50053481 50098792 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538399 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00210 nsv507252 5 50131512 50137512 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617672 S 4 1 0 "" CHM nsv830286 5 50201562 50410357 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444459,nssv1444460 M 95 2 0 "" nsv4820 5 50362789 50391645 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4833 S 9 1 0 "" NA19129 nsv830287 5 50415816 50545431 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444461 S 95 1 0 "" nsv522817 5 50449460 50451556 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698465 S 2026 0 1 "" nsv830288 5 50633979 50790998 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444463 S 95 1 0 "" nsv4822 5 50929749 50932731 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10449 S 9 1 0 "" NA18956 nsv830289 5 50944804 51127028 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444464 S 95 0 1 "" nsv4823 5 50951756 50981788 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5995 S 9 0 1 "" NA12156 nsv830290 5 51122706 51295171 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444465 S 95 1 0 "" nsv328490 5 51146284 51146284 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347068 M 24 "" nsv462165 5 51200604 51234829 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538400 S 1557 0 1 "" 1780854341_A nsv830291 5 51224825 51258519 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444467,nssv1444466,nssv1444469,nssv1444468,nssv1444472,nssv1444471,nssv1444470 M 95 0 7 "" dgv703n27 5 51313286 51424645 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv462166,nsv462167 M 1557 0 2 "" 1780854449_A,NINDS_94 nsv462169 5 51313286 51463486 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538403 S 1557 0 1 "" 1782681169_A nsv462171 5 51368887 51453099 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538404 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00925 dgv704n27 5 51403211 51468426 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv462186,nsv462181,nsv462185 M 1557 0 3 "" HGDP00210,HGDP00454,NINDS_178 nsv4824 5 51429952 51463544 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2695 S 9 1 0 "" NA18555 nsv830293 5 51454841 51628988 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444474 S 95 0 1 "" nsv441953 5 51465182 51467440 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv328050 5 51557052 51557107 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346628 M 24 "" nsv830294 5 51560560 51727356 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444475 S 95 1 0 "" nsv4825 5 51620714 51653014 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10451 S 9 1 0 "" NA18956 esv2752072 5 51684979 52008034 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6985191,essv6985190,essv6988902,essv6987187,essv6987186 M 771 1 0 "" SPC_121 nsv4826 5 51766334 51799549 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2520 S 9 1 0 "" NA18555 nsv462187 5 51794561 52369177 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538410 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00865 nsv509065 5 51857473 51874419 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623445 S 4 1 0 "" NA18994 nsv437953 5 51896668 51910461 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv468703,nssv468704 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA18503,NA18504 nsv4827 5 52014102 52041523 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4835 S 9 1 0 "" NA19129 nsv329236 5 52094679 52096083 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347814 M 24 "" nsv830295 5 52120289 52293453 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444476 S 95 1 0 "" nsv830296 5 52245285 52446010 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444477 S 95 1 0 "" dgv197n6 5 52267529 52267878 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv330015,nsv330021 M 24 "" nsv442948 5 52440276 52445196 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv328376 5 52494710 52495428 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346954 M 24 "" nsv830297 5 52528251 52743515 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444478 S 95 0 1 "" nsv515913 5 52528434 52581598 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv665275,nssv663680 M 2026 0 2 "" nsv522454 5 52528434 52607515 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705817 S 2026 0 1 "" nsv508356 5 52681925 52738877 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618766 S 4 0 1 "" NA10860 nsv517020 5 52706731 52713208 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv680604,nssv683679,nssv653628,nssv691703 M 2026 0 4 "" nsv520889 5 52706731 52719927 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697672 S 2026 0 1 "" nsv328038 5 52808037 52813049 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346616 M 24 "" nsv4828 5 52931227 52976036 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4836 S 9 0 1 "" NA19129 nsv830298 5 53009669 53229155 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444479 S 95 1 0 "" nsv329677 5 53212686 53212990 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv348255 M 24 "" nsv830299 5 53242777 53422357 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444480 S 95 1 0 "" nsv328114 5 53393116 53397147 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346692 M 24 "" nsv4829 5 53401848 53430999 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10452 S 9 1 0 "" NA18956 nsv329076 5 53419349 53419349 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347654 M 24 "" nsv4830 5 53456227 53477364 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8103 S 9 0 1 "" NA12156 nsv524694 5 53540521 53544943 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700671 S 2026 1 0 "" nsv329660 5 53599491 53603492 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv348238 M 24 "" nsv441954 5 53725229 53729924 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv528576 5 53742153 53757455 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705195 S 2026 0 1 "" nsv328514 5 53750806 53750891 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347092 M 24 "" nsv328649 5 53791290 53791377 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347227 M 24 "" nsv518397 5 53901364 53905333 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695827 S 2026 0 1 "" nsv523332 5 53901364 53905333 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699078 S 2026 1 0 "" nsv4831 5 54025275 54059413 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2696 S 9 1 0 "" NA18555 nsv526042 5 54053366 54054643 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702275 S 2026 0 1 "" nsv830300 5 54092057 54293101 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444481 S 95 0 1 "" nsv327146 5 54117516 54117664 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv345724 M 24 "" nsv830301 5 54261631 54459262 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444482,nssv1444483 M 95 2 0 "" nsv4833 5 54413754 54457644 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9664 S 9 0 1 "" NA18507 nsv830302 5 54439135 54590936 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444486,nssv1444485 M 95 2 0 "" nsv329701 5 54543717 54545728 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv348279 M 24 "" nsv523841 5 54670983 54680516 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699674 S 2026 0 1 "" nsv518688 5 54676253 54680516 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694262 S 2026 0 1 "" nsv830304 5 54824395 54987398 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444489,nssv1444488,nssv1444487,nssv1444490 M 95 3 1 "" nsv328978 5 54844085 54844152 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347556 M 24 "" nsv4834 5 54864698 54898584 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8104 S 9 1 0 "" NA12156 nsv830305 5 54875361 55075319 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444491 S 95 0 1 "" nsv507253 5 54989033 54995033 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621790,nssv620296 M 4 2 0 "" NA10860,NA15510 nsv329478 5 54990975 54994482 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv348056 M 24 "" nsv830306 5 55004637 55178239 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444492 S 95 1 0 "" dgv1799e1 5 55016652 55094749 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv984,essv2372 M 271 0 0 "" NA18995 nsv507254 5 55018837 55024837 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620297,nssv621791 M 4 2 0 "" NA10860,NA15510 nsv525146 5 55090370 55098280 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701216 S 2026 0 1 "" nsv4835 5 55093605 55127883 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3348 S 9 1 0 "" NA12878 nsv10698 5 55099288 55117392 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15473 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18972 nsv830307 5 55199515 55380027 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444493 S 95 1 0 "" nsv524739 5 55216666 55238308 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700730 S 2026 0 1 "" nsv327714 5 55217877 55223346 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346292 M 24 "" nsv507255 5 55414882 55420882 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620298,nssv617673,nssv621792 M 4 3 0 "" CHM,NA10860,NA15510 nsv329245 5 55441835 55444088 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347823 M 24 "" nsv519960 5 55453893 55458438 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697149 S 2026 0 1 "" dgv1800e1 5 55688830 55707856 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv25078,esv1019,essv24550 M 271 0 0 "" NA11831,NA12892 nsv10699 5 55700864 55706454 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14901,nssv13594 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA10839,NA18860 nsv4836 5 55901150 55935824 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3349 S 9 1 0 "" NA12878 nsv830308 5 55933260 56154987 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444494 S 95 1 0 "" nsv328545 5 55948664 55956271 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347123 M 24 "" nsv329292 5 56166869 56166934 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347870 M 24 "" nsv329673 5 56166983 56167048 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv348251 M 24 "" nsv527916 5 56338340 56340969 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704422 S 2026 0 1 "" nsv523034 5 56382095 56385031 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698717 S 2026 0 1 "" nsv528610 5 56435760 56436147 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705236 S 2026 0 1 "" nsv4837 5 56519351 56573043 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8105,nssv3350 M 9 2 0 "" NA12156,NA12878 nsv4838 5 56705851 56740453 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3351 S 9 1 0 "" NA12878 nsv4839 5 56831679 56876328 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8106 S 9 0 1 "" NA12156 nsv830309 5 56873347 57014040 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444496 S 95 1 0 "" nsv525330 5 56967430 57356100 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701441 S 2026 1 0 "" nsv830310 5 57025103 57211763 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444497 S 95 1 0 "" nsv10700 5 57313240 57349467 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12802 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18942 nsv508357 5 57340229 57395944 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617510,nssv619955,nssv622521 M 4 0 3 "" CHM,NA15510,NA18994 nsv4840 5 57346759 57388503 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv11105,nssv9665,nssv469,nssv3352,nssv10453,nssv9410,nssv2521,nssv5996,nssv4837 M 9 0 9 "" NA12156,NA12878,NA15510,NA18507,NA18517,NA18555,NA18956,NA19129,NA19240 nsv272 5 57356695 57375303 CNV Loss Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv272 S 1 0 1 "" NA15510 nsv10701 5 57359213 57371928 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14131,nssv14502,nssv12832,nssv13112,nssv12966 M 31 5 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA10863,NA18502,NA18942,NA19240 nsv442949 5 57361784 57369290 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv4841 5 57453814 57482687 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4838 S 9 1 0 "" NA19129 nsv4842 5 57689014 57730607 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2523,nssv3353,nssv9882,nssv10454,nssv470,nssv5997,nssv4839 M 9 0 7 "" NA12156,NA12878,NA18507,NA18555,NA18956,NA19129,NA19240 nsv508358 5 57708987 57745441 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619956,nssv618767,nssv622522,nssv617511 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv328972 5 57715759 57721867 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347550 M 24 "" nsv4844 5 57807678 57840743 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8108 S 9 1 0 "" NA12156 nsv830311 5 57948303 58141393 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444498 S 95 1 0 "" nsv4845 5 57985250 58029913 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv471 S 9 0 1 "" NA19240 dgv109n17 5 57990068 57997162 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437464,nsv437465 M 60 0 2 "" NA18872,NA19120 nsv328987 5 57991615 57995265 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347565 M 24 "" nsv442950 5 57992600 57994889 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv830312 5 58227336 58417983 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444499 S 95 1 0 "" nsv830313 5 58309481 58456855 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444500 S 95 0 1 "" nsv526881 5 58338737 58340256 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703239 S 2026 1 0 "" dgv343n21 5 58432005 58434958 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv528391,nsv522742 M 2026 0 2 "" nsv4846 5 58489281 58521776 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4840 S 9 1 0 "" NA19129 nsv327785 5 58503558 58503667 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346363 M 24 "" nsv328137 5 58503619 58503728 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346715 M 24 "" nsv520721 5 58556492 58594145 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697574 S 2026 0 1 "" nsv518845 5 58711295 58711806 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696298 S 2026 0 1 "" nsv328623 5 58905594 58905655 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347201 M 24 "" nsv462190 5 58972700 59059627 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538411 S 1557 1 0 "" 1780862301_A nsv462191 5 59029054 59074367 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538412 S 1557 0 1 "" 1780862596_A nsv328919 5 59093933 59093992 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347497 M 24 "" nsv515987 5 59164511 59176633 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv693644,nssv662909,nssv665596 M 2026 0 3 "" nsv508361 5 59372185 59401742 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619957 S 4 0 1 "" NA15510 nsv462192 5 59396098 59509972 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538413 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00045 nsv830316 5 59516026 59725586 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444501 S 95 0 1 "" esv32579 5 59525425 59531934 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101493,essv93809,essv96824,essv97366,essv92621 M 51 0 5 "" 21603,21634,21659,21879,22233 nsv4847 5 59559348 59605064 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5998 S 9 0 1 "" NA12156 nsv4848 5 59698651 59733531 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv472 S 9 1 0 "" NA19240 nsv4849 5 59749852 59774745 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9666 S 9 1 0 "" NA18507 dgv705n27 5 59758639 59807480 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv462193,nsv462194,nsv462197,nsv462196 M 1557 4 0 "" 1780854538_A,1780862101_A,NINDS_158,NINDS_55 nsv516823 5 59758639 59807480 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv691170,nssv671195,nssv655674,nssv687138,nssv689431,nssv692856,nssv687383 M 2026 7 0 "" nsv327281 5 59868007 59868267 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv345859 M 24 "" nsv328716 5 59999684 59999853 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347294 M 24 "" nsv4850 5 60011943 60075567 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5999,nssv9667 M 9 0 2 "" NA12156,NA18507 nsv508362 5 60026065 60086651 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622523 S 4 0 1 "" NA18994 esv2752073 5 60070232 60172383 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6981243,essv6981242,essv6987930,essv6987929,essv6981244 M 771 0 1 "" BEC_371 nsv4851 5 60072921 60097162 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9668 S 9 1 0 "" NA18507 nsv4852 5 60107810 60140111 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3354 S 9 1 0 "" NA12878 nsv462199 5 60165118 60365381 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538419 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00428 nsv462200 5 60171742 60302632 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538420 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00565 nsv520871 5 60177002 60355914 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv687059,nssv676645 M 2026 0 2 "" nsv518695 5 60302632 60365381 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696146 S 2026 0 1 "" nsv4853 5 60363455 60398187 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3355 S 9 1 0 "" NA12878 nsv329596 5 60436674 60440257 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv348174 M 24 "" nsv441955 5 60608904 60612617 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv510898 5 60610578 60623661 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618608 S 4 0 0 "" CHM nsv522826 5 60790176 60795281 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698476 S 2026 0 1 "" nsv509969 5 60911559 60917559 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622088 S 4 0 1 "" NA10860 nsv521793 5 60966062 60966341 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694563 S 2026 0 1 "" nsv329503 5 61074889 61074889 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv348081 M 24 "" nsv4856 5 61250977 61285111 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv473 S 9 1 0 "" NA19240 nsv508363 5 61322835 61398642 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622524 S 4 0 1 "" NA18994 nsv328195 5 61329384 61329709 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346773 M 24 "" nsv830317 5 61334597 61513870 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444502 S 95 1 0 "" dgv1801e1 5 61438895 61784669 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv10517,essv1927,essv16920,esv632,essv16040,essv22555,essv17927 M 271 0 0 "" NA07348,NA12003,NA18501,NA18959,NA19144,NA19240 nsv830318 5 61451470 61659077 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444503,nssv1444504 M 95 2 0 "" nsv4857 5 61452876 61485763 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4841 S 9 1 0 "" NA19129 dgv706n27 5 61463894 61497366 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv462202,nsv462201 M 1557 0 2 "" HGDP00573,HGDP00590 nsv10702 5 61546192 61587819 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14161,nssv14288,nssv13057 M 31 1 2 Samples from several populations that are part of the HapMap project. "" NA11830,NA12155,NA19240 nsv10703 5 61631935 61637250 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13374 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18975 essv5631 5 61685160 61784669 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18579 esv35035 5 61693700 61828000 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6979611,essv6979612,essv6986905 M 771 1 0 "" NA18579 nsv10704 5 61783295 61785892 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13250,nssv14191 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18853,NA19240 nsv328503 5 61891527 61892859 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347081 M 24 "" nsv329525 5 61892876 61892876 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv348103 M 24 "" nsv328501 5 61929991 61930130 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347079 M 24 "" nsv4858 5 61958062 62002717 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2524 S 9 0 1 "" NA18555 nsv4859 5 61998898 62030919 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6000 S 9 1 0 "" NA12156 dgv1802e1 5 62067121 62138099 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv6519,esv1147 M 271 0 0 "" NA18572 nsv10706 5 62075480 62141170 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12229 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18572 esv34525 5 62083400 62138100 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6990382,essv6979574,essv6979573,essv6986893,essv6986894 M 771 1 0 "" NA18572 nsv521534 5 62126018 62129790 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694087 S 2026 1 0 "" nsv327506 5 62204298 62205006 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346084 M 24 "" nsv830319 5 62247167 62429623 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444505 S 95 1 0 "" nsv519953 5 62509099 62509786 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv677285,nssv661944,nssv672430,nssv662720,nssv682070,nssv661547,nssv659619 M 2026 0 7 "" nsv830320 5 62631413 62813350 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444507 S 95 1 0 "" nsv526958 5 62640000 62649397 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703330 S 2026 0 1 "" nsv522800 5 62647459 62649397 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698445 S 2026 0 1 "" nsv328628 5 62723195 62723464 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347206 M 24 "" nsv462203 5 62745386 62896952 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538423 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00556 nsv830321 5 62751170 62800561 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444509,nssv1444508 M 95 0 2 "" nsv4860 5 63264592 63299372 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3356 S 9 1 0 "" NA12878 nsv830322 5 63542949 63686569 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444510 S 95 1 0 "" nsv830323 5 63707477 63899810 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444511 S 95 1 0 "" nsv462204 5 63746311 63831223 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538424 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00774 nsv7370 5 63762335 63847375 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10455,nssv9669,nssv4842,nssv9411,nssv3357 M 9 0 0 "" NA12878,NA18507,NA18517,NA18956,NA19129 nsv830324 5 63789206 64017810 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444512 S 95 0 1 "" nsv4861 5 63815842 63860951 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8109 S 9 0 1 "" NA12156 nsv508364 5 63921618 64004962 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618768 S 4 0 1 "" NA10860 esv2752074 5 63968206 64065130 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6984066,essv6984067,essv6984068 M 771 1 0 "" BEC_765 nsv330028 5 64321827 64322163 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv348606 M 24 "" nsv4862 5 64405293 64435816 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4843 S 9 1 0 "" NA19129 esv33603 5 64410949 64411300 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101219 S 51 0 1 "" 21618 nsv4863 5 64455910 64488084 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10456 S 9 1 0 "" NA18956 nsv830325 5 64526593 64716405 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444513 S 95 1 0 "" nsv517021 5 65027976 65040961 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv653629,nssv667325,nssv672116,nssv670354,nssv677626,nssv676019,nssv685054,nssv668187,nssv653963,nssv668930,nssv671577,nssv668060,nssv672937,nssv690165,nssv689615,nssv673762,nssv658956,nssv687230 M 2026 0 18 "" nsv507256 5 65070691 65076691 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620299,nssv621793,nssv622938,nssv617674 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv4864 5 65210095 65222974 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3358 S 9 1 0 "" NA12878 nsv830327 5 65242230 65364579 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444514,nssv1444516,nssv1444515 M 95 3 0 "" nsv517132 5 65304426 65304630 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv659841,nssv679445,nssv653836,nssv654015,nssv672220,nssv687944,nssv675952,nssv692561,nssv668362,nssv662545,nssv657970,nssv686509,nssv658233,nssv658897,nssv652490,nssv651792,nssv673212,nssv685427,nssv685651,nssv690166,nssv672331,nssv657511,nssv671947,nssv659287,nssv659228,nssv666007,nssv674574,nssv664742,nssv693112,nssv687301,nssv671243,nssv656708,nssv660801,nssv659786,nssv678736,nssv687533,nssv671723,nssv667533,nssv668566,nssv675240,nssv672904,nssv661307,nssv691812,nssv661548,nssv668061 M 2026 0 45 "" nsv525852 5 65304426 65310067 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702046 S 2026 0 1 "" nsv518239 5 65304426 65357067 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695671 S 2026 0 1 "" nsv830328 5 65420291 65627110 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444519 S 95 1 0 "" dgv23e24 5 65471104 65471766 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH esv2750697,esv2750538,esv2750691,esv2750546,esv2750496,esv2750506,esv2750582,esv2750589,esv2750608,esv2750649,esv2750675,esv2750699,esv2750720,esv2750766,esv2750774,esv2750669,esv2750560,esv2750665 M 51 0 18 "" 21618,21634,21693,21721,21791,21863,21872,21879,21909,21911,21932,21944,22011,22128,22233,22278,22298,22335 esv33447 5 65479484 65479742 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93167,essv92684 M 51 0 2 "" 21863,21944 nsv525178 5 65567923 65572109 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701254 S 2026 0 1 "" nsv520876 5 65694877 65701669 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv676786,nssv686409 M 2026 0 2 "" nsv508365 5 65889567 65938544 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619958 S 4 0 1 "" NA15510 nsv527623 5 65913718 65915157 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704090 S 2026 0 1 "" nsv522181 5 66044113 66067060 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694954 S 2026 0 1 "" nsv516753 5 66151738 66153861 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv686318,nssv656641,nssv660255,nssv688620,nssv675819,nssv670634,nssv676761 M 2026 0 7 "" nsv509970 5 66188302 66194302 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622089,nssv623976 M 4 0 2 "" NA10860,NA18994 nsv507257 5 66318822 66324822 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622939,nssv620300,nssv617675,nssv621794 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 dgv1803e1 5 66393681 66586635 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv16352,esv467 M 271 0 0 "" NA19193 nsv830329 5 66618383 66813343 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444520 S 95 1 0 "" nsv830330 5 66705818 66891261 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444521 S 95 0 1 "" nsv521664 5 66719145 66722326 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698283 S 2026 0 1 "" nsv515715 5 66856030 66856251 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv655456,nssv669040,nssv689250,nssv664512 M 2026 0 4 "" nsv524512 5 66869753 66871036 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700456 S 2026 0 1 "" nsv4865 5 67066180 67098588 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6001 S 9 1 0 "" NA12156 dgv707n27 5 67156957 67220978 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv462208,nsv462205,nsv462207,nsv462209 M 1557 4 0 "" HGDP00029,HGDP00054,HGDP00064,HGDP00072 nsv507258 5 67250681 67256681 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621795 S 4 1 0 "" NA10860 nsv4867 5 67274695 67306988 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6002 S 9 1 0 "" NA12156 nsv4868 5 67333919 67359016 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8110 S 9 0 1 "" NA12156 nsv508366 5 67359345 67415272 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618769 S 4 0 1 "" NA10860 nsv329291 5 67403145 67403959 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347869 M 24 "" nsv517504 5 67575723 67575927 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv672089,nssv658195,nssv652209 M 2026 0 3 "" nsv830331 5 67583583 67748693 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444522 S 95 1 0 "" nsv462210 5 67607169 67647242 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538430 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01230 nsv4869 5 67871329 67903231 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6003 S 9 1 0 "" NA12156 nsv527027 5 68065763 68068178 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703402 S 2026 0 1 "" nsv328643 5 68170500 68174971 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347221 M 24 "" nsv830332 5 68274044 68318437 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444523 S 95 0 1 "" nsv329221 5 68387083 68387083 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347799 M 24 "" nsv329464 5 68465796 68465903 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv348042 M 24 "" nsv527990 5 68484450 68490922 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704513 S 2026 0 1 "" nsv509066 5 68500132 68558002 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620821 S 4 1 0 "" NA15510 nsv821643 5 68604421 70408241 CNV Loss Sebat_et_al_2004 15273396 ROMA Custom Nimblegen photoprint 85000 probe ROMA oligo array nssv1421395,nssv1421402,nssv1421398,nssv1421401,nssv1421393,nssv1421400,nssv1421394,nssv1421399,nssv1421391,nssv1421390,nssv1421397,nssv1421392 M 31 0 12 "" nsv329061 5 68845276 68845276 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347639 M 24 "" nsv10707 5 68862708 70697011 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13166,nssv12550,nssv13146,nssv13037,nssv15593,nssv13714,nssv12670,nssv15660,nssv12892,nssv13806,nssv13548,nssv14438,nssv15863,nssv14439,nssv12695,nssv13296,nssv14863,nssv13235,nssv13889,nssv15720,nssv13518,nssv13684,nssv14682,nssv13456,nssv13340,nssv14592,nssv13306,nssv13256,nssv13584,nssv15043,nssv14251,nssv13326,nssv13816,nssv14199,nssv14931,nssv15267,nssv13155,nssv14893,nssv14311,nssv12490,nssv13490,nssv13636,nssv13455,nssv13596,nssv13624,nssv15524,nssv12610,nssv14139,nssv13618,nssv15231,nssv15201,nssv15261,nssv13370,nssv13623,nssv13357,nssv15177,nssv14937,nssv15057,nssv12400,nssv13127,nssv14983,nssv13829,nssv13626,nssv12665,nssv14991,nssv13336,nssv13246,nssv15554,nssv15750,nssv13536,nssv13266,nssv13366,nssv13396,nssv13833,nssv13578,nssv13245,nssv15743,nssv13989,nssv15081,nssv13460,nssv15237,nssv13983,nssv14281,nssv15713,nssv13836,nssv13494,nssv13386,nssv15833,nssv13606,nssv13486,nssv15464,nssv13776,nssv14652,nssv13485,nssv13683,nssv13524,nssv12995,nssv14622,nssv15803,nssv12982,nssv14803,nssv13335,nssv14348,nssv13226,nssv13297,nssv12875,nssv14049,nssv13488,nssv15087,nssv12640,nssv13708,nssv15254,nssv15503,nssv12922,nssv13267,nssv15163,nssv14802,nssv13310,nssv12845,nssv13863,nssv13506,nssv12491,nssv13566,nssv13116,nssv15404,nssv14221,nssv13395,nssv13237,nssv14289,nssv13713,nssv13929,nssv12935,nssv13773,nssv15073,nssv13145,nssv13893,nssv13520,nssv14109,nssv13505,nssv14923,nssv12520,nssv13716,nssv13535,nssv13276,nssv13475,nssv13275,nssv13055,nssv13025,nssv13186,nssv13953,nssv13923,nssv12725,nssv13666,nssv13012,nssv14907,nssv14961,nssv14727,nssv15133,nssv13696,nssv13176,nssv15494,nssv13042,nssv14967,nssv13196,nssv15051,nssv13558,nssv13528,nssv13919,nssv14349,nssv13803,nssv13327,nssv14371,nssv13774,nssv15027,nssv12977,nssv13215,nssv13899,nssv14847,nssv12952,nssv13608,nssv13207,nssv14499,nssv15374,nssv14532,nssv13262,nssv15224,nssv12862,nssv13187,nssv13295,nssv13445,nssv15810,nssv13365,nssv13355,nssv13464,nssv13026,nssv13949,nssv14997,nssv13653,nssv13447,nssv13864,nssv13648,nssv13265,nssv15147,nssv14562,nssv13446,nssv13172,nssv14469,nssv13202,nssv14319,nssv13804,nssv14229,nssv13638,nssv14019,nssv13726,nssv13554,nssv12996,nssv13686,nssv15563,nssv14259,nssv13115,nssv14712,nssv13576,nssv13280,nssv13067,nssv13924,nssv13322,nssv13516,nssv13834,nssv13142,nssv15284,nssv12815,nssv14833,nssv12370,nssv13678,nssv12319,nssv13125,nssv13546,nssv15344,nssv13185,nssv13007,nssv13656,nssv15683,nssv13117,nssv12460,nssv13859,nssv15141,nssv12259,nssv14877,nssv13305,nssv12289,nssv15207,nssv13292,nssv13216,nssv14953,nssv13894,nssv13984,nssv13286,nssv13205,nssv12905,nssv13385,nssv13954,nssv13325,nssv13476,nssv15690,nssv14341,nssv15653,nssv13400,nssv13387,nssv13175,nssv13588,nssv12785,nssv13206,nssv13236,nssv12580,nssv15623,nssv13786,nssv13565,nssv12521,nssv13157,nssv13654,nssv15533,nssv15021,nssv14378,nssv12965,nssv13458,nssv13959,nssv15013,nssv14379,nssv13404,nssv14318,nssv13147,nssv12461,nssv13356,nssv13232,nssv13177,nssv14169,nssv14817,nssv13405,nssv13056,nssv15171,nssv13869,nssv15314,nssv13465 M 31 29 13 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10847,NA10863,NA11830,NA12155,NA12740,NA12802,NA12872,NA18502,NA18504,NA18517,NA18537,NA18552,NA18563,NA18564,NA18572,NA18853,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19144,NA19173,NA19221,NA19240 esv32846 5 68864771 69741347 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv94583 S 51 0 1 "" 21932 nsv471498 5 68887001 69356689 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv547836,nssv547835,nssv547837 M 3 "" nsv433371 5 68899306 70033323 CNV Gain Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463252 S 9 1 0 Samples from several populations that are part of the HapMap project. "" NA18517 nsv507259 5 68954453 68960453 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622940,nssv621796,nssv620301,nssv617676 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv830333 5 68979794 69200031 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444582,nssv1444575,nssv1444537,nssv1444528,nssv1444571,nssv1444546,nssv1444531,nssv1444570,nssv1444569,nssv1444539,nssv1444574,nssv1444545,nssv1444572,nssv1444542,nssv1444544,nssv1444536,nssv1444543,nssv1444550,nssv1444555,nssv1444547,nssv1444549,nssv1444548,nssv1444581,nssv1444552,nssv1444554,nssv1444527,nssv1444580,nssv1444577,nssv1444556,nssv1444579,nssv1444553,nssv1444578,nssv1444530,nssv1444559,nssv1444583,nssv1444558,nssv1444568,nssv1444535,nssv1444557,nssv1444526,nssv1444541,nssv1444561,nssv1444585,nssv1444560,nssv1444576,nssv1444586,nssv1444532,nssv1444567,nssv1444564,nssv1444566,nssv1444563,nssv1444534,nssv1444565,nssv1444525,nssv1444524,nssv1444533,nssv1444538 M 95 57 0 "" nsv830334 5 69070334 69258800 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444625,nssv1444627,nssv1444608,nssv1444624,nssv1444605,nssv1444626,nssv1444603,nssv1444604,nssv1444598,nssv1444607,nssv1444601,nssv1444589,nssv1444612,nssv1444616,nssv1444611,nssv1444609,nssv1444610,nssv1444623,nssv1444588,nssv1444614,nssv1444615,nssv1444613,nssv1444587,nssv1444622,nssv1444602,nssv1444590,nssv1444592,nssv1444600,nssv1444593,nssv1444618,nssv1444591,nssv1444594,nssv1444596,nssv1444621,nssv1444599,nssv1444597,nssv1444619,nssv1444620 M 95 38 0 "" nsv510915 5 69092288 69126225 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621581 S 4 0 0 "" NA15510 essv8115 5 69109876 69264678 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19206 dgv1804e1 5 69109876 69679055 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv5996,essv4262,essv13895 M 271 0 0 "" NA18571,NA18603,NA18854 dgv1805e1 5 69109876 70425468 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv5227,essv673,essv22431,essv2274,essv18163,essv20274,essv21066,essv46,essv14861,essv24001,essv22080,essv23652,essv1260,essv20784,essv22483,essv23257,essv21815,essv23595,essv7765,essv22470,essv19619,essv23394,essv7074,essv19773,essv12162,essv22936,essv18392,essv9098,essv5315,essv15603,essv20052,essv16996,essv7216,essv1761,essv4354,essv1483,essv20168,essv23185,essv4823,essv18662,essv2865,essv11216,essv17604,essv6993,essv21800,essv16712,essv4024,essv21224,essv19385,essv23813,essv4979,essv19675,essv17660,essv24500,essv10634,essv23033,essv13589,essv19957,essv18860,essv17045,essv18136,essv9809,essv19096,essv19543,essv10827,essv18337,essv16799,essv20352,essv17721,essv4621,essv1607,essv14782,essv1434,essv21729,essv11007,essv24150,essv2015,essv19173,essv4010,essv154,essv20580,essv7398,essv15750,essv17271,essv15455,essv4551,essv5930,essv351,essv24477 M 271 0 0 "" NA06991,NA07029,NA07048,NA07055,NA07056,NA07357,NA10835,NA10847,NA10854,NA10861,NA10863,NA11830,NA11832,NA11839,NA11840,NA11881,NA11882,NA11993,NA11994,NA12006,NA12056,NA12057,NA12144,NA12146,NA12154,NA12155,NA12156,NA12234,NA12236,NA12239,NA12248,NA12249,NA12264,NA12716,NA12751,NA12753,NA12761,NA12763,NA12802,NA12812,NA12813,NA12864,NA12865,NA12872,NA18503,NA18505,NA18522,NA18524,NA18537,NA18540,NA18542,NA18547,NA18550,NA18563,NA18573,NA18594,NA18611,NA18612,NA18623,NA18635,NA18637,NA18855,NA18863,NA18871,NA18872,NA18942,NA18944,NA18949,NA18953,NA18966,NA18968,NA18970,NA18971,NA18975,NA18980,NA18991,NA18995,NA18997,NA19101,NA19127,NA19131,NA19132,NA19137,NA19142,NA19143,NA19144,NA19159,NA19172,NA19204 dgv1806e1 5 69109876 70831640 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2830,essv2572,essv6652,essv21267,essv22107,essv19004,essv24056,essv22231,essv24764,essv16491,essv14587,essv11969,essv13097,essv24407,essv279,essv24977,essv16073,essv15308,essv24857,essv21557,essv2338,essv18714,essv9180,essv21322,essv233,essv15033,essv20660,essv10389,essv2182,essv22586,essv17492,essv10811,essv10480,essv17457,esv373 M 271 0 0 "" NA07000,NA07348,NA10839,NA10855,NA10857,NA10859,NA10860,NA12005,NA12043,NA12044,NA12707,NA12762,NA12873,NA12874,NA12878,NA12892,NA18501,NA18515,NA18517,NA18523,NA18608,NA18852,NA18862,NA18940,NA18948,NA18960,NA18978,NA18987,NA18990,NA19093,NA19128,NA19129,NA19210,NA19222 nsv469703 5 69126940 69247905 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649636 M 265 6 1 Samples from several populations that are part of the HapMap project. "" nsv509067 5 69226986 69226986 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620822 S 4 1 0 "" NA15510 nsv508367 5 69239253 70010329 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618773,nssv622525,nssv618770,nssv619959 M 4 0 3 "" NA10860,NA15510,NA18994 nsv830335 5 69310928 69461835 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444630,nssv1444633,nssv1444635,nssv1444632,nssv1444631,nssv1444634 M 95 6 0 "" esv32787 5 69341948 70622744 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101483,essv101209,essv100922,essv98254,essv94658,essv94393,essv95615,essv95414,essv93148,essv97447,essv101648,essv101774,essv95898,essv98946,essv92737,essv96122,essv96123,essv96728,essv93566,essv92609,essv98076,essv100476,essv100363,essv96289 M 51 18 6 "" 21603,21618,21693,21772,21791,21808,21841,21847,21863,21879,21909,21911,21938,21944,22007,22011,22128,22233,22259,22298,22300,22371 nsv471547 5 69356690 69440000 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv547971,nssv547970 M 3 "" nsv511104 5 69372868 69416076 OTHER Inversion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622368 S 4 0 0 "" NA10860 nsv471489 5 69440001 70231831 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv547815,nssv547814,nssv547813 M 3 "" nsv511105 5 69452562 69560096 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621582,nssv622369 M 4 0 0 "" NA10860,NA15510 dgv1807e1 5 69475945 70425468 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv3237,essv796,essv589,essv5812,essv1412,essv4435,essv6731,essv3557,essv18449,essv4769,essv16312,essv6309,essv23504,essv12728,essv7798,essv6871,essv1941,essv11957,essv4716 M 271 0 0 "" NA07034,NA11831,NA18502,NA18552,NA18558,NA18562,NA18566,NA18605,NA18609,NA18620,NA18622,NA18914,NA18956,NA18959,NA18965,NA18974,NA18998,NA19007,NA19193 nsv433372 5 69522322 69724106 CNV Gain Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463253 S 9 1 0 Samples from several populations that are part of the HapMap project. "" NA12878 nsv511106 5 69716528 70328006 OTHER Inversion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622370,nssv624297 M 4 0 0 "" NA10860,NA18994 nsv7371 5 69770285 70439401 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2525,nssv476 M 9 0 0 "" NA18555,NA19240 nsv830336 5 69893666 70137556 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444678,nssv1444666,nssv1444647,nssv1444663,nssv1444671,nssv1444655,nssv1444646,nssv1444664,nssv1444665,nssv1444645,nssv1444648,nssv1444667,nssv1444652,nssv1444670,nssv1444650,nssv1444668,nssv1444649,nssv1444669,nssv1444677,nssv1444654,nssv1444672,nssv1444675,nssv1444653,nssv1444676,nssv1444644,nssv1444679,nssv1444683,nssv1444636,nssv1444674,nssv1444661,nssv1444660,nssv1444682,nssv1444656,nssv1444659,nssv1444658,nssv1444680,nssv1444657,nssv1444681,nssv1444643,nssv1444685,nssv1444638,nssv1444637,nssv1444686,nssv1444639,nssv1444642,nssv1444688,nssv1444687,nssv1444641 M 95 48 0 "" nsv507260 5 69987474 69993474 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621797 S 4 1 0 "" NA10860 nsv830338 5 70031476 70199946 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444721,nssv1444698,nssv1444693,nssv1444692,nssv1444724,nssv1444691,nssv1444720,nssv1444719,nssv1444694,nssv1444697,nssv1444722,nssv1444723,nssv1444699,nssv1444705,nssv1444701,nssv1444700,nssv1444702,nssv1444703,nssv1444715,nssv1444725,nssv1444704,nssv1444709,nssv1444707,nssv1444690,nssv1444718,nssv1444708,nssv1444712,nssv1444710,nssv1444711,nssv1444713,nssv1444696,nssv1444689,nssv1444714,nssv1444716 M 95 34 0 "" dgv1808e1 5 70072978 70425468 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv23327,essv3121 M 271 0 0 "" NA12750,NA18969 nsv509068 5 70102868 70102868 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619416 S 4 1 0 "" NA10860 nsv509070 5 70114319 70114319 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620823 S 4 1 0 "" NA15510 nsv469668 5 70180475 70322082 CNV Gain Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649597 M 265 16 0 Samples from several populations that are part of the HapMap project. "" nsv830339 5 70220361 70423291 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444729,nssv1444727,nssv1444726,nssv1444731,nssv1444730,nssv1444732 M 95 6 0 "" dgv19n31 5 70231832 70316000 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis nsv471509,nsv471546,nsv471545 M 3 "" nsv471432 5 70232246 70250112 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548265,nssv548264 M 3 "" dgv1809e1 5 70234598 70425468 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv24227,essv13686,essv8598,essv9432,essv8468,essv8102,essv3347,essv10103,essv12670,essv24687,essv13788,essv22298,essv5552,essv11646,essv6265,essv20907,essv17022,essv9362,essv10202,essv13030,essv9105,essv23933,essv15020,essv17140,essv21998,essv10589,essv14486,essv9696,essv12780,essv21393,essv22847,essv21437,essv14445,essv13568,essv11756 M 271 0 0 "" NA06985,NA10856,NA11829,NA11995,NA12004,NA12717,NA12740,NA12801,NA12814,NA18500,NA18504,NA18516,NA18529,NA18636,NA18853,NA18859,NA18860,NA18870,NA18913,NA18945,NA19119,NA19120,NA19130,NA19144,NA19152,NA19153,NA19154,NA19160,NA19171,NA19201,NA19202,NA19206,NA19208,NA19239,NA19240 dgv1810e1 5 70234598 70831640 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv13848,essv12592,essv15273 M 271 0 0 "" NA18854,NA19094,NA19098 nsv507261 5 70251963 70257963 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620302,nssv621798 M 4 2 0 "" NA10860,NA15510 nsv471433 5 70256524 70284592 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548266 S 3 "" nsv471434 5 70300066 70356697 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548269,nssv548270,nssv548268 M 3 "" dgv27n14 5 70311476 70412247 CNV Loss Cooper et al 2008 18776910 SNP_array nsv433229,nsv433230 M 9 0 2 "" NA18555,NA18956 nsv433373 5 70327006 70685177 CNV Gain Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463254 S 9 1 0 Samples from several populations that are part of the HapMap project. "" NA18517 nsv511107 5 70394062 70452890 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621583,nssv622371 M 4 0 0 "" NA10860,NA15510 nsv4870 5 70429750 70464265 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv477 S 9 1 0 "" NA19240 nsv4871 5 70540340 70550610 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10457 S 9 1 0 "" NA18956 nsv509072 5 70560439 70560439 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623447 S 4 1 0 "" NA18994 nsv528571 5 70715382 70803025 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705190 S 2026 0 1 "" nsv830340 5 70832869 71002866 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444734,nssv1444733,nssv1444735 M 95 0 3 "" nsv328811 5 70964727 70971842 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347389 M 24 "" nsv4872 5 71043404 71076309 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4844 S 9 1 0 "" NA19129 nsv830341 5 71092861 71257178 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444736 S 95 1 0 "" nsv507262 5 71222175 71228175 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621799,nssv620303 M 4 2 0 "" NA10860,NA15510 nsv830342 5 71659612 71823446 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444737 S 95 1 0 "" nsv516808 5 71791858 71792426 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv676700,nssv656789,nssv672640,nssv690274,nssv673720,nssv687416,nssv674181,nssv671066,nssv658981,nssv676879,nssv678281 M 2026 0 11 "" nsv507263 5 71844331 71850331 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620304,nssv622941,nssv621800 M 4 3 0 "" NA10860,NA15510,NA18994 dgv1811e1 5 71935078 72108737 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv5257,esv188 M 271 0 0 "" NA18624 nsv10708 5 71984707 71988204 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12700,nssv13866 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA10863,NA12802 esv33537 5 72056932 72058963 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93364 S 51 1 0 "" 22170 nsv525479 5 72152162 72421895 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701607 S 2026 0 1 "" nsv830343 5 72180747 72365812 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444738 S 95 0 1 "" nsv830344 5 72456626 72632083 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444741,nssv1444742 M 95 1 1 "" nsv517209 5 72482521 72487477 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv675181,nssv683902,nssv670662,nssv654016 M 2026 0 4 "" nsv522532 5 72492177 72495882 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705904 S 2026 0 1 "" nsv4873 5 72500462 72534148 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8112 S 9 1 0 "" NA12156 nsv830345 5 72529453 72725504 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444743,nssv1444744,nssv1444745 M 95 2 1 "" nsv4874 5 72688280 72699190 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8113 S 9 1 0 "" NA12156 dgv344n21 5 72695929 72696541 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv521645,nsv527013 M 2026 0 2 "" nsv4875 5 72768443 72813252 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8114 S 9 0 1 "" NA12156 nsv830346 5 72834804 72974010 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444746 S 95 0 1 "" nsv830347 5 72848908 73038205 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444747 S 95 1 0 "" nsv830349 5 73114845 73321102 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444748 S 95 1 0 "" nsv4876 5 73380154 73412701 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6005 S 9 1 0 "" NA12156 nsv507264 5 73433640 73439640 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621801 S 4 1 0 "" NA10860 dgv345n21 5 73523708 73541867 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv516250,nsv524103 M 2026 0 3 "" nsv830350 5 73589696 73722751 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444749 S 95 1 0 "" nsv509971 5 73637079 73643079 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618204,nssv622090,nssv621260 M 4 0 3 "" CHM,NA10860,NA15510 nsv4878 5 73674345 73719008 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8115 S 9 0 1 "" NA12156 dgv198n6 5 73684742 73685070 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv328018,nsv328271 M 24 "" nsv830351 5 73817310 73968588 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444750 S 95 0 1 "" nsv509972 5 73850413 73856413 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621261 S 4 0 1 "" NA15510 nsv521024 5 74003720 74004814 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv680022,nssv682003,nssv692158 M 2026 0 3 "" nsv518286 5 74204801 74278876 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695718 S 2026 1 0 "" nsv830352 5 74225251 74373700 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444753,nssv1444752,nssv1444754 M 95 3 0 "" nsv4879 5 74434520 74471282 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4845,nssv478,nssv2697 M 9 3 0 "" NA18555,NA19129,NA19240 nsv509073 5 74450307 74460525 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620826 S 4 1 0 "" NA15510 dgv1812e1 5 74469516 74647470 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv11034,esv487 M 271 0 0 "" NA19143 nsv4880 5 74516469 74551695 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3359 S 9 1 0 "" NA12878 nsv327808 5 74518731 74522189 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346386 M 24 "" nsv329892 5 74725205 74727136 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv348470 M 24 "" nsv329298 5 74835412 74835412 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347876 M 24 "" nsv4881 5 74874534 74906777 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10458 S 9 1 0 "" NA18956 nsv518475 5 74898797 75447560 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695911 S 2026 1 0 "" nsv522003 5 74983191 75024125 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694772 S 2026 0 1 "" nsv830353 5 74997276 75188365 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444755 S 95 1 0 "" nsv830354 5 75109899 75295154 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444756 S 95 0 1 "" nsv4882 5 75145861 75175990 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10459 S 9 1 0 "" NA18956 nsv4883 5 75396682 75409719 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8116 S 9 0 1 "" NA12156 nsv526084 5 75446267 75566250 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702328 S 2026 1 0 "" essv21478 5 75462619 75485751 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA10830 dgv1813e1 5 75462619 75510536 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv22620,esv1127 M 271 0 0 "" NA12154 esv34707 5 75464771 75485900 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6978708,essv6978709 M 771 1 0 "" NA12154 esv34958 5 75464771 75510677 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6980388,essv6980387 M 771 1 0 "" NA10830 nsv818353 5 75467195 75485883 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415574,nssv1415575 M 112 2 0 "" NA10830,NA12154 nsv516875 5 75467195 75491007 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv660741,nssv654615 M 2026 2 0 "" nsv327180 5 75471437 75471554 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv345758 M 24 "" nsv329230 5 75498189 75498189 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347808 M 24 "" nsv509074 5 75519314 75538493 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618040 S 4 1 0 "" CHM dgv1814e1 5 75647353 75678730 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv18776,esv1140 M 271 0 0 "" NA12891 nsv328635 5 75703536 75705126 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347213 M 24 "" nsv4884 5 75720343 75754094 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8117 S 9 1 0 "" NA12156 nsv4885 5 75858905 75860005 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3360 S 9 1 0 "" NA12878 nsv462213 5 76103380 76148625 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538431 S 1557 1 0 "" 1780862346_A nsv521533 5 76127981 76136292 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698151 S 2026 0 1 "" nsv524024 5 76201774 76223533 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699886 S 2026 0 1 "" nsv830355 5 76230478 76403776 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444758,nssv1444757 M 95 2 0 "" nsv329265 5 76271746 76274014 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347843 M 24 "" nsv469515 5 76411762 76562428 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649681 M 265 0 1 Samples from several populations that are part of the HapMap project. "" nsv4886 5 76417020 76450163 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2526 S 9 1 0 "" NA18555 nsv4887 5 76461193 76481295 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4846 S 9 1 0 "" NA19129 nsv507265 5 76553185 76559185 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622942 S 4 1 0 "" NA18994 nsv4889 5 76718752 76751039 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2527 S 9 1 0 "" NA18555 nsv328235 5 77098065 77098374 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346813 M 24 "" nsv4890 5 77144761 77147045 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3362 S 9 1 0 "" NA12878 nsv329632 5 77210444 77210444 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv348210 M 24 "" nsv329130 5 77326432 77326432 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347708 M 24 "" nsv328833 5 77609934 77610223 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347411 M 24 "" nsv328878 5 77723602 77723651 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347456 M 24 "" nsv830356 5 77882778 78047755 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444759,nssv1444760 M 95 1 1 "" nsv328668 5 77916561 77916883 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347246 M 24 "" nsv4891 5 77921052 77933079 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3363 S 9 1 0 "" NA12878 nsv528833 5 77973209 78052616 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705508 S 2026 0 1 "" nsv327788 5 78071749 78071749 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346366 M 24 "" esv33131 5 78137898 78138243 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv95879 S 51 0 1 "" 21911 esv32584 5 78145665 78147458 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93912,essv96866,essv94115,essv95785,essv96646,essv93227,essv99608,essv100258 M 51 0 8 "" 21634,21659,21802,21911,22011,22170,22217,22286 nsv515905 5 78145873 78146288 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv670176,nssv693554,nssv693113,nssv667736,nssv687302,nssv676646,nssv663085,nssv676020,nssv690200,nssv655340,nssv665238,nssv655569,nssv666600,nssv661427,nssv678306 M 2026 0 15 "" nsv525764 5 78145873 78151267 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701932 S 2026 0 1 "" nsv329776 5 78149748 78149748 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv348354 M 24 "" esv33559 5 78172047 78172170 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93274 S 51 0 1 "" 22170 dgv346n21 5 78187948 78300797 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv518918,nsv519629 M 2026 2 0 "" nsv509973 5 78305700 78311700 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623977,nssv622091 M 4 0 2 "" NA10860,NA18994 dgv199n6 5 78312505 78312843 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv329485,nsv328802 M 24 "" nsv462215 5 78355378 78387392 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538432 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01262 nsv462216 5 78360108 78409187 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538433 S 1557 0 1 "" 1780862020_A nsv519156 5 78387268 78503760 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694311 S 2026 1 0 "" nsv525398 5 78446320 78449260 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701521 S 2026 1 0 "" nsv4892 5 78461657 78482471 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv479 S 9 1 0 "" NA19240 nsv4893 5 78581313 78614914 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8118 S 9 1 0 "" NA12156 nsv462218 5 78839534 78948599 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538435 S 1557 1 0 "" 1798860114_A nsv830357 5 78897206 79058345 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444761 S 95 1 0 "" nsv518412 5 79048094 79048957 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695844 S 2026 0 1 "" nsv327489 5 79049468 79049774 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346067 M 24 "" nsv527750 5 79191335 79196242 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704236 S 2026 0 1 "" nsv518012 5 79191335 79202743 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695424 S 2026 0 1 "" nsv521066 5 79202743 79206357 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv689493,nssv681106 M 2026 2 0 "" nsv4894 5 79341484 79374788 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4847 S 9 1 0 "" NA19129 dgv708n27 5 79434150 79438199 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv462219,nsv462220 M 1557 0 2 "" HGDP00961,NINDS_111 nsv516093 5 79447004 79448084 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv661452,nssv666162,nssv656661,nssv701778,nssv680055,nssv658628,nssv670423,nssv673800,nssv661724,nssv684084,nssv667830,nssv656526 M 2026 0 12 "" nsv328136 5 79592945 79593258 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346714 M 24 "" nsv522634 5 79613516 79616574 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv706032 S 2026 0 1 "" nsv518863 5 79614553 79616574 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696318 S 2026 1 0 "" nsv518480 5 79621841 79784138 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695918 S 2026 1 0 "" nsv507266 5 79690319 79696319 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621802,nssv620305,nssv617677,nssv622943 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv328596 5 79697888 79705819 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347174 M 24 "" nsv507267 5 79921410 79927410 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622944,nssv620306 M 4 2 0 "" NA15510,NA18994 nsv4895 5 79955166 79971724 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4848 S 9 1 0 "" NA19129 nsv10709 5 79981555 79984631 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13217,nssv13595 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA10847,NA18563 nsv10710 5 79992202 80000705 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13247,nssv13072,nssv13668,nssv13979,nssv15291 M 31 5 0 Samples from several populations that are part of the HapMap project. "" NA18563,NA18564,NA18860,NA18942,NA19173 nsv10711 5 80062244 80063823 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14401 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19240 nsv329246 5 80075138 80075446 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347824 M 24 "" nsv4896 5 80222958 80248000 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9671 S 9 1 0 "" NA18507 nsv830358 5 80232861 80394676 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444763 S 95 1 0 "" nsv507268 5 80245378 80251378 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617678 S 4 1 0 "" CHM nsv830360 5 80319034 80481796 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444764 S 95 0 1 "" nsv4897 5 80319952 80365979 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6006 S 9 0 1 "" NA12156 nsv4898 5 80528243 80562076 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2698 S 9 1 0 "" NA18555 nsv462221 5 80869894 80918866 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538438 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01418 nsv525225 5 80884840 80918866 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701313 S 2026 0 1 "" nsv525437 5 80912115 81000208 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701565 S 2026 0 1 "" nsv462222 5 80936475 81000208 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538439 S 1557 1 0 "" 1780862090_A nsv830361 5 80945567 81116165 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444768,nssv1444767,nssv1444766,nssv1444765,nssv1444769 M 95 0 5 "" nsv527374 5 80973851 81000208 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703806 S 2026 0 1 "" nsv519589 5 80994757 81000208 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv656984,nssv690459,nssv705337 M 2026 1 2 "" nsv830362 5 81026543 81220005 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444770 S 95 1 0 "" nsv327664 5 81043938 81044210 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346242 M 24 "" nsv4900 5 81057774 81103121 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6007 S 9 0 1 "" NA12156 nsv517223 5 81085296 81086670 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv654061,nssv687802,nssv664127,nssv663199 M 2026 0 4 "" esv2752082 5 81201460 81444500 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6982177,essv6988501,essv6982178 M 771 1 0 "" BEC_40 nsv509974 5 81202140 81208140 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618205,nssv623978 M 4 0 2 "" CHM,NA18994 nsv830363 5 81229925 81281507 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444771,nssv1444772,nssv1444775,nssv1444774,nssv1444776 M 95 0 5 "" dgv1815e1 5 81245981 81550493 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv479,essv23878,essv21869,essv23451 M 271 0 0 "" NA10854,NA11839,NA12814 nsv328970 5 81324942 81324942 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347548 M 24 "" essv21771 5 81369998 81550493 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12239 nsv10712 5 81455614 81470280 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12730,nssv13515,nssv15840,nssv15321,nssv14468,nssv15193,nssv14013,nssv15297,nssv12551,nssv14009,nssv13698,nssv13477,nssv13495,nssv13277,nssv13132,nssv14832,nssv14461,nssv13625,nssv13738,nssv15893,nssv13550,nssv13614,nssv13352,nssv15584,nssv13846,nssv14529,nssv13316,nssv12349,nssv14014,nssv13896 M 31 0 30 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10847,NA10863,NA11830,NA12155,NA12740,NA12802,NA12872,NA18502,NA18504,NA18517,NA18537,NA18552,NA18563,NA18564,NA18572,NA18853,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19144,NA19173,NA19221,NA19240 nsv830364 5 81524522 81693211 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444777 S 95 0 1 "" nsv520938 5 81576994 81756475 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697698 S 2026 1 0 "" nsv524657 5 81651106 81673640 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700624 S 2026 0 1 "" nsv4901 5 81971433 82001757 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2528 S 9 1 0 "" NA18555 nsv4902 5 82035275 82080380 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8119 S 9 0 1 "" NA12156 nsv330144 5 82192489 82192803 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv348722 M 24 "" nsv437466 5 82236917 82243474 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467347 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18515 nsv525083 5 82247794 82248328 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701141 S 2026 0 1 "" nsv511108 5 82379887 82392734 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618646 S 4 0 0 "" CHM nsv830365 5 82457087 82613383 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444778 S 95 0 1 "" nsv519738 5 82529814 82537649 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv685055,nssv658030 M 2026 0 2 "" dgv709n27 5 82580547 82668485 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv462223,nsv462226,nsv462225,nsv462224 M 1557 0 4 "" HGDP00189,HGDP00583,HGDP00597,HGDP00689 nsv830366 5 82667445 82849256 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444779 S 95 1 0 "" nsv4903 5 82772481 82806524 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3364 S 9 1 0 "" NA12878 nsv830367 5 82863408 83074137 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444781,nssv1444780 M 95 1 1 "" nsv462227 5 82876015 82907302 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538444 S 1557 0 1 "" 1780854464_A nsv4904 5 82967692 82999634 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6008 S 9 1 0 "" NA12156 nsv327409 5 82977067 82979858 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv345987 M 24 "" nsv4905 5 83241416 83274781 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2699 S 9 1 0 "" NA18555 nsv525596 5 83258072 83310844 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701739 S 2026 0 1 "" nsv830368 5 83279031 83451375 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444782,nssv1444783 M 95 0 2 "" dgv200n6 5 83347120 83351651 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv329003,nsv328041 M 24 "" nsv520830 5 83404046 83412138 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697638 S 2026 1 0 "" nsv329064 5 83411723 83411873 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347642 M 24 "" nsv830369 5 83442255 83616800 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444785 S 95 0 1 "" nsv830371 5 83549730 83718796 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444786 S 95 1 0 "" nsv4906 5 83725782 83758544 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6009 S 9 1 0 "" NA12156 nsv518166 5 83835179 83943410 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695587 S 2026 0 1 "" nsv462231 5 83970229 84017219 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538445 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00197 nsv4907 5 83972501 84000000 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3365,nssv6010,nssv2529,nssv4849 M 9 0 4 "" NA12156,NA12878,NA18555,NA19129 nsv511109 5 83974867 83991661 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621584 S 4 0 0 "" NA15510 nsv508368 5 83981588 83997062 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617512,nssv618775,nssv622526 M 4 0 3 "" CHM,NA10860,NA18994 dgv28n14 5 83984178 83989687 CNV Loss Cooper et al 2008 18776910 SNP_array nsv433471,nsv433474,nsv433473,nsv433475,nsv433472 M 9 0 5 "" NA12156,NA12878,NA15510,NA18555,NA18956 nsv442952 5 83985102 83990457 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv523535 5 84014710 84023989 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699310 S 2026 0 1 "" nsv521418 5 84054094 84147680 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698028 S 2026 1 0 "" dgv710n27 5 84054094 84148611 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv462234,nsv462233,nsv462232 M 1557 3 0 "" HGDP00001,HGDP00007,HGDP00230 nsv462235 5 84090465 84126356 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538449 S 1557 0 1 "" 1780854326_A nsv830372 5 84098848 84269099 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444787,nssv1444788 M 95 1 1 "" dgv711n27 5 84218302 84280859 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv462236,nsv462237 M 1557 0 2 "" 1780862574_A,HGDP00100 nsv507269 5 84219948 84225948 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621803 S 4 1 0 "" NA10860 nsv462238 5 84234173 84305873 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538452 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00214 nsv462240 5 84326238 85695581 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538453 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00781 nsv830373 5 84342918 84493673 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444789 S 95 0 1 "" nsv523213 5 84357199 84363448 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698934 S 2026 0 1 "" nsv462241 5 84399973 84444987 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538454 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00634 nsv818354 5 84435697 84444987 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417526 S 112 1 0 "" NA18968 nsv462242 5 84449593 84506435 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538455 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00171 nsv830374 5 84457438 84485133 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444797,nssv1444796,nssv1444790,nssv1444794,nssv1444792,nssv1444791,nssv1444793,nssv1444798,nssv1444799,nssv1444801,nssv1444802,nssv1444800 M 95 4 8 "" nsv462243 5 84509544 84552170 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538456 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00963 nsv507270 5 84795931 84801931 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622945,nssv621804 M 4 2 0 "" NA10860,NA18994 esv2422510 5 85034919 85205077 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161426 S 181 1 0 "" ND03704 nsv329250 5 85042090 85042090 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347828 M 24 "" nsv327614 5 85112927 85120231 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346192 M 24 "" nsv507271 5 85161601 85167601 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617679 S 4 1 0 "" CHM nsv509975 5 85239226 85245226 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621262,nssv623979,nssv618206,nssv622092 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv10713 5 85488846 85494535 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13346 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19007 nsv327400 5 85497994 85498043 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv345978 M 24 "" nsv10714 5 85551422 85556425 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12379 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18572 nsv462245 5 85647747 85689961 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538457 S 1557 0 1 "" 1780862530_A nsv818355 5 85660173 85666781 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417483 S 112 1 0 "" NA12234 nsv509976 5 85710341 85716341 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623980 S 4 0 1 "" NA18994 nsv327420 5 85713149 85713149 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv345998 M 24 "" dgv201n6 5 85751276 85751351 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv330059,nsv329914 M 24 "" nsv830375 5 85827267 85986101 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444803 S 95 1 0 "" nsv830376 5 86020737 86220493 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444808,nssv1444804,nssv1444807,nssv1444805,nssv1444810,nssv1444809,nssv1444813,nssv1444812,nssv1444811,nssv1444814,nssv1444815 M 95 11 0 "" nsv830377 5 86126842 86330146 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444816 S 95 1 0 "" nsv442953 5 86151134 86154902 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv507272 5 86231966 86237966 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622946,nssv617680,nssv620308,nssv621805 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv830378 5 86239653 86428724 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444818 S 95 0 1 "" nsv328853 5 86250465 86251315 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347431 M 24 "" nsv329975 5 86252745 86252800 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv348553 M 24 "" nsv509977 5 86259415 86265415 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622093,nssv618207,nssv621263,nssv623981 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv523725 5 86367504 86386634 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699541 S 2026 0 1 "" nsv523586 5 86375643 86386634 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699376 S 2026 0 1 "" nsv462246 5 86375643 86388257 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538458 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00183 nsv329214 5 86405623 86408438 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347792 M 24 "" nsv4908 5 86494807 86526793 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10461 S 9 1 0 "" NA18956 nsv519140 5 86526049 86530513 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696618 S 2026 1 0 "" nsv519817 5 86530513 86553999 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv658898,nssv677103 M 2026 0 2 "" nsv830379 5 86566448 86743263 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444819 S 95 1 0 "" nsv327831 5 86667018 86670109 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346409 M 24 "" nsv830380 5 86975926 87019533 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444820 S 95 1 0 "" nsv830382 5 86994014 87169419 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444821 S 95 0 1 "" nsv830383 5 87083859 87248346 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444822 S 95 1 0 "" nsv509978 5 87167332 87173332 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618208 S 4 0 1 "" CHM nsv4909 5 87298547 87331478 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3366 S 9 1 0 "" NA12878 nsv4911 5 87308069 87339968 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2530 S 9 0 1 "" NA18555 nsv830384 5 87380049 87550906 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444823 S 95 1 0 "" nsv509979 5 87411639 87417639 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618209 S 4 0 1 "" CHM dgv202n6 5 87414637 87417822 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv328133,nsv327522 M 24 "" nsv830385 5 87434637 87588640 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444824 S 95 1 0 "" nsv329205 5 87742726 87747213 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347783 M 24 "" nsv524630 5 87986493 88039857 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700593 S 2026 0 1 "" nsv515977 5 88004620 88039857 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv668740,nssv696769,nssv669813,nssv705358,nssv692763,nssv665567,nssv658392,nssv667297,nssv669567 M 2026 1 8 "" nsv329625 5 88078911 88079237 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv348203 M 24 "" nsv527694 5 88278462 88283022 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704172 S 2026 0 1 "" nsv830386 5 88281667 88456338 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444825 S 95 1 0 "" nsv830387 5 88583618 88718198 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444826 S 95 1 0 "" nsv830388 5 88614695 88829626 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444827 S 95 1 0 "" nsv830389 5 88705740 88896139 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444834,nssv1444836,nssv1444829,nssv1444833,nssv1444832,nssv1444835,nssv1444830,nssv1444831 M 95 8 0 "" nsv528738 5 88840595 88844350 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705394 S 2026 0 1 "" nsv327649 5 88896316 88896316 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346227 M 24 "" nsv528583 5 88938301 88938581 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705204 S 2026 1 0 "" nsv830390 5 89090358 89272339 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444837 S 95 0 1 "" nsv4912 5 89464207 89503250 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2532,nssv3367,nssv11106,nssv6011,nssv4850,nssv480 M 9 6 0 "" NA12156,NA12878,NA15510,NA18555,NA19129,NA19240 nsv509075 5 89465951 89487141 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618041,nssv623448,nssv620827,nssv619418 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv273 5 89472164 89487593 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv273 S 1 1 0 "" NA15510 nsv830391 5 89492338 89676951 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444840,nssv1444838 M 95 0 2 "" nsv830393 5 89535400 89694249 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444841 S 95 1 0 "" nsv509980 5 89674694 89680694 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623982 S 4 0 1 "" NA18994 nsv518131 5 89783898 89817350 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694061 S 2026 0 1 "" nsv522663 5 90031559 90034210 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv706065 S 2026 0 1 "" nsv517049 5 90038887 90298231 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv684629,nssv653689,nssv674060,nssv692598,nssv677927,nssv654017 M 2026 3 3 "" nsv328817 5 90177807 90177924 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347395 M 24 "" nsv462247 5 90285656 90334388 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538459 S 1557 0 1 "" 1780854061_A nsv4913 5 90364946 90366393 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10462 S 9 1 0 "" NA18956 nsv515529 5 90449107 90449321 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv663838,nssv677414,nssv662664 M 2026 0 3 "" nsv508369 5 90522773 90554296 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617513 S 4 0 1 "" CHM nsv329121 5 90610450 90610742 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347699 M 24 "" nsv441956 5 90650176 90656821 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv80n68 5 90979805 91171028 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH nsv830395,nsv830394 M 95 4 0 "" nsv830396 5 91157111 91378992 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444846 S 95 0 1 "" nsv527762 5 91190974 91191289 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704249 S 2026 0 1 "" nsv830397 5 91249677 91432400 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444847 S 95 0 1 "" nsv4914 5 91292625 91338337 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3368 S 9 0 1 "" NA12878 nsv462248 5 91413585 91443472 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538460 S 1557 0 1 "" NINDS_183 nsv329591 5 91725295 91725295 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv348169 M 24 "" nsv4915 5 91861829 91902083 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8120 S 9 0 1 "" NA12156 nsv4916 5 91924725 91960075 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3369 S 9 1 0 "" NA12878 nsv462249 5 92034039 92079905 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538461 S 1557 0 1 "" 1780854061_A nsv528282 5 92050388 92065977 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704852 S 2026 0 1 "" nsv462251 5 92050388 92095164 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538462 S 1557 1 0 "" 1780862207_A nsv830398 5 92128582 92307087 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444848 S 95 1 0 "" nsv4917 5 92314390 92320142 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10463 S 9 1 0 "" NA18956 nsv830399 5 92316671 92488246 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444849 S 95 0 1 "" dgv81n68 5 92540782 92764652 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH nsv830400,nsv830401 M 95 8 0 "" nsv508370 5 92565538 92600997 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622528 S 4 0 1 "" NA18994 nsv462252 5 92583725 92621695 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538463 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00886 nsv462253 5 92583725 92637414 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538464 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00143 nsv507273 5 92592225 92598225 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621806,nssv617681 M 4 2 0 "" CHM,NA10860 nsv830402 5 92729657 92873101 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444862,nssv1444861,nssv1444864 M 95 3 0 "" nsv830404 5 92894092 93074013 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444865 S 95 0 1 "" nsv4918 5 92924182 92969115 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8121 S 9 0 1 "" NA12156 nsv830405 5 93112581 93284274 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444866 S 95 0 1 "" nsv327963 5 93534161 93543711 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346541 M 24 "" nsv830406 5 93540085 93709268 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444867 S 95 1 0 "" dgv347n21 5 93668926 93815065 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv523867,nsv518161 M 2026 0 2 "" nsv4919 5 93687335 93707155 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8122 S 9 0 1 "" NA12156 esv32708 5 93699656 93699817 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv95172,essv95464 M 51 2 0 "" 21721,21847 dgv1816e1 5 93790961 93969969 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv7421,essv3398 M 271 0 0 "" NA18623,NA18945 dgv1817e1 5 93790961 94067957 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv222,essv16527,essv10306,essv10902,essv8845,essv658,essv18201,essv1828,essv1473,essv3065,essv6120,essv24484,essv19783,essv19902,essv88,essv1271,essv23241,essv11835,essv7130,essv12508,essv22174,essv6727,essv7549,essv20229,essv16120,essv15245,essv18582,essv22350,essv24792,essv21149,essv14305,essv4451,essv13629,essv21802,essv6032,essv127,essv15126,essv471,essv19607,essv5408,essv16451,essv4174,essv6641,essv4820,essv15560,essv12324,essv7324,essv6811,essv19426,essv3079,essv23207,essv9189,essv14769,essv11535,essv3296,essv22899,essv20203,essv9408,essv6985,essv23377,essv23822,essv4025,esv19,essv6241,essv5030,essv20577,essv20944,essv4970,essv4633,essv13067,essv9358,essv14379,essv24526,essv4373,essv13839,essv20014,essv3973,essv17819,essv9870,essv10679,essv19249,essv23078,essv8319,essv24834,essv8330,essv17583,essv16937,essv11699,essv13017,essv800,essv23958,essv17168,essv14087,essv16705,essv16913,essv18105,essv9778,essv19558,essv18359,essv16227,essv21996,essv21387,essv15693,essv7790,essv18277,essv21190,essv9704,essv7724,essv21536,essv12556,essv2332,essv17971,essv20394,essv24157,essv4739,essv15898,essv23663,essv12658,essv14149,essv13548,essv2844,essv18976,essv4246,essv11190,essv2210,essv11046,essv23574,essv3777,essv3526,essv2287,essv6354,essv2663,essv22183,essv15536,essv14535,essv375 M 271 0 0 "" NA06985,NA07000,NA07029,NA07048,NA07056,NA10830,NA10831,NA10835,NA10838,NA10846,NA10847,NA10857,NA10860,NA10863,NA11830,NA11832,NA11840,NA11993,NA11994,NA11995,NA12003,NA12005,NA12006,NA12044,NA12056,NA12057,NA12144,NA12155,NA12156,NA12234,NA12239,NA12740,NA12750,NA12760,NA12762,NA12763,NA12801,NA12802,NA12812,NA12813,NA12814,NA12815,NA12864,NA12873,NA18500,NA18505,NA18506,NA18507,NA18508,NA18521,NA18532,NA18537,NA18540,NA18545,NA18552,NA18555,NA18558,NA18563,NA18570,NA18571,NA18573,NA18576,NA18579,NA18594,NA18603,NA18608,NA18609,NA18612,NA18620,NA18621,NA18633,NA18635,NA18636,NA18637,NA18852,NA18853,NA18854,NA18855,NA18858,NA18859,NA18861,NA18863,NA18912,NA18913,NA18940,NA18944,NA18948,NA18952,NA18953,NA18956,NA18960,NA18961,NA18965,NA18966,NA18967,NA18968,NA18969,NA18970,NA18971,NA18972,NA18975,NA18976,NA18981,NA18991,NA18995,NA19094,NA19098,NA19100,NA19103,NA19127,NA19128,NA19129,NA19137,NA19138,NA19139,NA19140,NA19142,NA19143,NA19144,NA19145,NA19154,NA19159,NA19160,NA19161,NA19171,NA19173,NA19194,NA19202,NA19205,NA19207,NA19208,NA19209,NA19210,NA19211,NA19223 dgv1818e1 5 93886642 94067957 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2465,essv11884 M 271 0 0 "" NA18999,NA19221 nsv10715 5 93927706 93934218 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15923,nssv14039,nssv13655,nssv12581,nssv13580,nssv13798,nssv14559,nssv15614,nssv13545,nssv14491,nssv13644,nssv14043,nssv13382,nssv13307,nssv13926,nssv13876,nssv14044 M 31 0 17 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10847,NA10863,NA12740,NA12872,NA18517,NA18537,NA18552,NA18563,NA18853,NA18972,NA18975,NA19144,NA19173,NA19240 nsv327822 5 93942056 93942392 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346400 M 24 "" nsv518269 5 93969574 93975426 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695700 S 2026 0 1 "" nsv462254 5 93982693 94082581 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538465 S 1557 0 1 "" NINDS_145 nsv4920 5 94028224 94061433 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2533 S 9 1 0 "" NA18555 nsv327898 5 94271651 94271651 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346476 M 24 "" nsv329198 5 94312424 94313631 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347776 M 24 "" nsv509981 5 94395510 94401510 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623983,nssv622094,nssv618210,nssv621264 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv830407 5 94473286 94521085 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444868,nssv1444869 M 95 1 1 "" nsv327439 5 94484748 94484800 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346017 M 24 "" nsv509076 5 94562855 94578413 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619419,nssv623449 M 4 2 0 "" NA10860,NA18994 nsv511111 5 94562855 94594186 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621585,nssv618647 M 4 0 0 "" CHM,NA15510 nsv4922 5 94564301 94581182 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9672,nssv481,nssv6012,nssv3370,nssv10464 M 9 5 0 "" NA12156,NA12878,NA18507,NA18956,NA19240 nsv830408 5 94919788 94941751 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444871,nssv1444870,nssv1444876,nssv1444872,nssv1444873,nssv1444875,nssv1444877,nssv1444878 M 95 0 8 "" nsv507274 5 95018809 95024809 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620309,nssv617682 M 4 2 0 "" CHM,NA15510 nsv830409 5 95032442 95230252 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444879 S 95 1 0 "" nsv462255 5 95168573 95193911 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538466 S 1557 0 1 "" NINDS_229 dgv1819e1 5 95257462 95566189 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv7453,esv569,essv6940 M 271 0 0 "" NA18582 esv34203 5 95336741 95478080 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6990389,essv6979626 M 771 1 0 "" NA18582 nsv10718 5 95345196 95347186 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15870 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19221 dgv203n6 5 95369068 95369436 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv327502,nsv330040 M 24 "" dgv348n21 5 95373542 95450955 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv522097,nsv522465 M 2026 0 2 "" nsv4923 5 95421092 95454875 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3371 S 9 1 0 "" NA12878 nsv830410 5 95531555 95692066 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444881,nssv1444880,nssv1444883,nssv1444882 M 95 4 0 "" nsv518730 5 95573301 95595325 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696180 S 2026 0 1 "" nsv507275 5 95854933 95860933 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617683,nssv621807,nssv620310,nssv622947 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv528714 5 95936221 95947285 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705364 S 2026 0 1 "" nsv509982 5 96025901 96031901 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618211 S 4 0 1 "" CHM nsv830411 5 96070924 96213573 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444884 S 95 0 1 "" nsv516293 5 96095961 96242143 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv667386,nssv700683,nssv673060 M 2026 2 1 "" nsv436983 5 96135967 96137839 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv466864 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA10847 nsv507276 5 96297197 96303197 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622948 S 4 1 0 "" NA18994 nsv4924 5 96417207 96462989 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6013 S 9 0 1 "" NA12156 nsv4925 5 96420355 96453096 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2534 S 9 1 0 "" NA18555 nsv830412 5 96453061 96632375 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444886 S 95 0 1 "" nsv830413 5 96476338 96535050 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444902,nssv1444909,nssv1444900,nssv1444908,nssv1444897,nssv1444905,nssv1444911,nssv1444899,nssv1444898,nssv1444910,nssv1444901,nssv1444888,nssv1444887,nssv1444890,nssv1444889,nssv1444892,nssv1444891,nssv1444906,nssv1444904,nssv1444894,nssv1444903,nssv1444893,nssv1444895 M 95 0 23 "" nsv509983 5 96606651 96612651 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622095,nssv618212 M 4 0 2 "" CHM,NA10860 nsv830415 5 96623519 96789913 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444912 S 95 1 0 "" nsv527650 5 96809482 97286114 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704121 S 2026 0 1 "" nsv518575 5 96836203 96874779 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696019 S 2026 0 1 "" nsv830416 5 96843084 96983989 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444913 S 95 1 0 "" nsv509077 5 96884668 96908113 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623450,nssv618042 M 4 2 0 "" CHM,NA18994 dgv25e196 5 96915087 97041210 CNV Deletion Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array esv2422222,esv2422198,esv2422224 M 181 0 3 "" ND01703,ND04103,ND04275 nsv830417 5 96940967 97154952 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444914 S 95 0 1 "" nsv4926 5 97015579 97060767 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8124 S 9 0 1 "" NA12156 dgv712n27 5 97030897 97134382 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv462257,nsv462258 M 1557 0 2 "" 1780854009_A,HGDP01399 nsv517188 5 97053242 97162812 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv667111,nssv672576,nssv673320,nssv691600,nssv669041,nssv675992,nssv656847,nssv678153,nssv661811,nssv675380,nssv674705,nssv668646,nssv670765,nssv684085,nssv662416,nssv652879,nssv675820,nssv687249,nssv656062,nssv671790,nssv664476,nssv664513,nssv677581,nssv678251,nssv671353,nssv686986,nssv652945,nssv655193,nssv659001,nssv663342,nssv660154,nssv687803,nssv680327,nssv671030,nssv667035,nssv689685,nssv679248,nssv687077,nssv688689,nssv674149,nssv675477,nssv651682,nssv691210,nssv657598,nssv682334,nssv660444,nssv651994,nssv700585,nssv674938,nssv669814,nssv659759,nssv667185,nssv663976,nssv673115,nssv658845,nssv668022,nssv684925,nssv677823,nssv666680,nssv691271,nssv683827,nssv663449,nssv653965,nssv663431,nssv659672,nssv690706,nssv665346,nssv654062,nssv652082,nssv676021,nssv657922,nssv690649,nssv669891,nssv677797,nssv690783,nssv686299,nssv687231,nssv661992,nssv678357,nssv682557,nssv668621,nssv665674,nssv652145,nssv659827,nssv660416,nssv662566,nssv657212 M 2026 0 87 "" dgv204e55 5 97054185 97125100 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv2752085,esv2752084 M 771 0 2 "" BEC_492,SPC_76 dgv1820e1 5 97054185 97163903 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv23268,essv18813,essv20743,essv17697,esv1148 M 271 0 0 "" NA07345,NA07357,NA10835,NA12248 dgv713n27 5 97057733 97097576 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv462260,nsv462259 M 1557 0 2 "" HGDP00561,HGDP00572 nsv10719 5 97073276 97122281 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13507 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA11830 esv33845 5 97073687 97119405 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98230,essv101650,essv93571 M 51 0 3 "" 21772,21909,22128 dgv714n27 5 97074222 97107276 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv462263,nsv462301,nsv462287,nsv462262,nsv462288 M 1557 0 5 "" 1780862194_A,1780862356_A,HGDP00171,HGDP00222,HGDP00722 dgv55n64 5 97074222 97121798 CNV Loss Wang_et_al_2007 17921354 SNP_array nsv818358,nsv818357 M 112 0 5 "" NA07345,NA07357,NA10835,NA12248,NA12812 dgv715n27 5 97074222 97134382 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv462264,nsv462282,nsv462307,nsv462289,nsv462275,nsv462303,nsv462296,nsv462267,nsv462265,nsv462285,nsv462294,nsv462310,nsv462297,nsv462304,nsv462274,nsv462268,nsv462280,nsv462270,nsv462299,nsv462271,nsv462273,nsv462279,nsv462266,nsv462308,nsv462302,nsv462278,nsv462291,nsv462300,nsv462277,nsv462305,nsv462276,nsv462290,nsv462292,nsv462269,nsv462309,nsv462293,nsv462298 M 1557 0 37 "" 1780854063_A,1780854130_A,1780854401_A,1780862002_A,1780862003_A,1780862082_A,1780862093_A,1780862123_A,1780862358_A,1780862399_A,1780862466_A,1780862505_A,1780862559_A,1780862573_A,1782681076_A,1782681247_A,HGDP00068,HGDP00519,HGDP00520,HGDP00526,HGDP01163,HGDP01168,HGDP01258,NINDS_10,NINDS_109,NINDS_173,NINDS_178,NINDS_204,NINDS_225,NINDS_23,NINDS_244,NINDS_43,NINDS_50,NINDS_60,NINDS_79,NINDS_88,NINDS_95 nsv462286 5 97075236 97076368 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538493 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00213 essv19069 5 97076449 97125076 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA11830 essv19139 5 97076449 97151719 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12812 nsv442954 5 97098292 97119490 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv442955 5 97142617 97146263 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv10720 5 97154663 97158292 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15351 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18860 nsv830418 5 97165127 97352634 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444915 S 95 0 1 "" nsv329655 5 97297310 97297310 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv348233 M 24 "" nsv4927 5 97337872 97382841 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8125 S 9 0 1 "" NA12156 nsv515944 5 97406979 97419988 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv669568,nssv665397 M 2026 2 0 "" dgv1821e1 5 97421264 97575845 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv16286,essv13533 M 271 0 0 "" NA19160,NA19161 dgv1822e1 5 97421264 97643999 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv13969,esv765 M 271 0 0 "" NA19160 nsv10721 5 97426041 97428801 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13442,nssv13728,nssv15223,nssv14069,nssv12409,nssv14521,nssv13828,nssv13575,nssv14103,nssv13337,nssv15900,nssv13162,nssv15953,nssv14498,nssv15327,nssv13906,nssv14589 M 31 14 3 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA12155,NA12740,NA18504,NA18537,NA18552,NA18563,NA18564,NA18572,NA18942,NA18972,NA19132,NA19144,NA19173,NA19221,NA19240 esv32866 5 97450477 97489621 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99527 S 51 1 0 "" 22335 nsv10722 5 97465358 97468302 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14862,nssv13788,nssv13376,nssv12469 M 31 0 4 Samples from several populations that are part of the HapMap project. "" NA18502,NA18564,NA18572,NA19007 essv8076 5 97468282 97558496 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19161 nsv509984 5 97471470 97477470 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623984,nssv618213,nssv621265 M 4 0 3 "" CHM,NA15510,NA18994 nsv516094 5 97473351 97537826 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv666163,nssv666953,nssv671480 M 2026 3 0 "" dgv56n64 5 97473351 97583573 CNV Gain Wang_et_al_2007 17921354 SNP_array nsv818360,nsv818359 M 112 2 0 "" NA19160,NA19161 nsv442956 5 97512922 97517816 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv327552 5 97549087 97549087 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346130 M 24 "" nsv818361 5 97581046 97583573 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416736 S 112 0 1 "" NA19161 nsv830419 5 97681618 97856979 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444916 S 95 1 0 "" nsv4928 5 97717884 97762799 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8126 S 9 0 1 "" NA12156 nsv328931 5 97865526 97872131 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347509 M 24 "" nsv330011 5 97871850 97872165 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv348589 M 24 "" nsv508372 5 97959231 97976760 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619960 S 4 0 1 "" NA15510 nsv441957 5 97961571 97963403 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv509985 5 98005171 98011171 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621266 S 4 0 1 "" NA15510 nsv4929 5 98016231 98033386 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8127 S 9 0 1 "" NA12156 nsv441958 5 98117485 98123869 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv507277 5 98237367 98243367 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621808 S 4 1 0 "" NA10860 nsv4930 5 98346668 98378544 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2535 S 9 0 1 "" NA18555 nsv462312 5 98497801 98516161 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538516 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00239 nsv528411 5 98523325 98526305 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705003 S 2026 0 1 "" nsv471631 5 98625473 98814385 CNV Loss Sharp et al 2005 15918152 BAC_aCGH,FISH Eichler Segmental Duplication BAC array nssv551193,nssv551190,nssv551196,nssv551192,nssv551195,nssv551194,nssv551191 M 48 0 7 "" JK1051,JK1058,NA10471,NA10494,NA10495,NA10496,P86GA dgv1823e1 5 98633225 98917493 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv350,essv6184 M 271 0 0 "" NA18532 nsv10723 5 98691745 98694711 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13610,nssv13406,nssv13192,nssv13818,nssv13537,nssv14551 M 31 6 0 Samples from several populations that are part of the HapMap project. "" NA11830,NA18564,NA18853,NA18942,NA19007,NA19240 nsv10724 5 98784677 98786989 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15357 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19132 nsv517312 5 98803229 98825827 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv679249,nssv651683,nssv671791,nssv691601,nssv675478 M 2026 0 5 "" nsv462313 5 98807429 98825827 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538517 S 1557 0 1 "" 1780862195_A nsv10725 5 98864129 98871055 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14133,nssv13222,nssv13848,nssv13956,nssv13567 M 31 0 5 Samples from several populations that are part of the HapMap project. "" NA07048,NA10863,NA11830,NA18564,NA18942 nsv10726 5 98881808 98900803 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12790,nssv13936,nssv14619,nssv15983,nssv13986,nssv13525,nssv14528 M 31 0 7 Samples from several populations that are part of the HapMap project. "" NA10863,NA12155,NA12740,NA12802,NA18552,NA18972,NA18980 nsv4931 5 98956987 98984844 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3373 S 9 1 0 "" NA12878 nsv830420 5 98964870 99107688 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444917 S 95 1 0 "" nsv521463 5 99102291 99567832 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698073 S 2026 1 0 "" nsv462314 5 99116413 99211696 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538518 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01351 dgv82n68 5 99124137 99318460 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH nsv830422,nsv830421 M 95 3 0 "" nsv469588 5 99183898 99367063 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649702 M 265 0 7 Samples from several populations that are part of the HapMap project. "" nsv10727 5 99192494 99201339 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14129,nssv13597 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA11830,NA19173 nsv830423 5 99194930 99380487 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444922 S 95 0 1 "" nsv327347 5 99202229 99202542 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv345925 M 24 "" nsv4933 5 99216599 99244099 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6015 S 9 1 0 "" NA12156 nsv509078 5 99226179 99229795 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623451 S 4 1 0 "" NA18994 nsv471743 5 99233715 99233841 CNV Loss Hinds et al 2006 16327809 Oligo_aCGH,PCR Custom Perlegen arrays nssv646024 M 1.228 95 "" nsv462315 5 99234017 99251584 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538519 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00464 nsv518318 5 99234017 99291611 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695749 S 2026 0 1 "" nsv525500 5 99234017 99347065 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701632 S 2026 1 0 "" essv7693 5 99235573 99537338 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18633 esv730 5 99235573 99911270 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent + Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 "" nsv526724 5 99263541 99334382 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703064 S 2026 0 1 "" nsv462316 5 99296223 99318210 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538520 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01347 nsv830424 5 99325980 99504477 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444923,nssv1444925,nssv1444924 M 95 1 2 "" esv33013 5 99350606 99473668 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101516,essv97611,essv101192,essv93956,essv96787,essv101076,essv95131,essv98177,essv94733,essv94096,essv101399,essv94412,essv97801,essv95644,essv95647,essv95512,essv93031,essv95253,essv97396,essv101724,essv101684,essv95855,essv94526,essv94601,essv99050,essv92981,essv92777,essv96094,essv96722,essv98537,essv95961,essv93581,essv93211,essv99613,essv92595,essv98074,essv96523,essv96464,essv99233,essv99203,essv97789,essv100195,essv100609,essv100332,essv99428,essv96311,essv94283 M 51 2 42 "" 21603,21616,21618,21634,21659,21693,21721,21772,21791,21802,21805,21808,21837,21841,21847,21863,21872,21879,21909,21911,21932,21938,21939,21944,22007,22011,22085,22127,22128,22170,22217,22233,22259,22261,22275,22278,22286,22298,22300,22335,22371,22394 nsv517073 5 99359383 99415259 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv653736,nssv678334,nssv654192,nssv662721,nssv674784,nssv678763 M 2026 0 6 "" nsv10729 5 99408605 99420824 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13674,nssv15644,nssv13858,nssv12611,nssv13627,nssv12820,nssv15930,nssv13640,nssv12499,nssv16013,nssv14016,nssv13472,nssv14163,nssv14558,nssv13605,nssv13252,nssv15381,nssv14892,nssv14159,nssv14581,nssv15253,nssv15960,nssv15387,nssv13367,nssv14649,nssv13966,nssv14104,nssv13685 M 31 0 27 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10847,NA10863,NA11830,NA12155,NA12740,NA12802,NA12872,NA18502,NA18504,NA18517,NA18537,NA18552,NA18563,NA18572,NA18853,NA18860,NA18942,NA18972,NA18975,NA19132,NA19144,NA19173,NA19221,NA19240 esv34624 5 99411368 99692426 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6979358,essv6986839,essv6979356,essv6979357 M 771 1 0 "" NA18532 dgv1824e1 5 99413870 99537338 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv24152,essv17593,essv10246,essv1847,essv3073,essv18238,essv8460,essv18089,essv1266,essv1722,essv10740,essv9925,essv22117,essv7120,essv15233,essv21764,essv11826,essv9435,essv6023,essv11155,essv6678,essv18611,essv21205,essv8214,essv12782,essv14534,essv686,essv7824,essv10423,essv10049,essv12614,essv9075,essv14386,essv12554,essv15563,essv4741,essv4863,essv22405,essv12295,essv16438,essv2292,essv5575,essv7007,essv4143,essv20405,essv15394,essv7615,essv20156,essv16508,essv16106,essv11020,essv14181,essv21151,essv9165,essv14295,essv11593,essv19760,essv13450,essv23362,essv4086,essv23816,essv6242,essv4988,essv20069,essv20892,essv13090,essv5034,essv4303,essv9398,essv24487,essv13892,essv10649,essv19591,essv23035,essv10920,essv19283,essv1947,essv11432,essv5442,essv18369,essv8365,essv19960,essv13011,essv23918,essv5175,essv4461,essv14058,essv18143,essv17106,essv24882,essv9826,essv15015,essv23666,essv18360,essv10864,essv22864,essv21961,essv15641,essv18295,essv12713,essv11860,essv2346,essv24752,essv6829,essv1442,essv7333,essv20620,essv15055,essv5406,essv13542,essv230,essv18987,essv16831,essv12493,essv483,essv2862,essv19392,essv17767,essv23571,essv3779,essv3545,essv15817,essv159,essv22184,essv15483,essv5241,essv3140,essv3957,essv10276 M 271 0 0 "" NA07000,NA07048,NA07056,NA10830,NA10831,NA10835,NA10838,NA10846,NA10847,NA10857,NA10860,NA10861,NA10863,NA11830,NA11832,NA11840,NA11993,NA11994,NA11995,NA12005,NA12006,NA12044,NA12057,NA12145,NA12234,NA12239,NA12249,NA12750,NA12760,NA12762,NA12763,NA12801,NA12802,NA12812,NA12813,NA12814,NA12815,NA12864,NA18500,NA18505,NA18506,NA18507,NA18516,NA18521,NA18523,NA18529,NA18537,NA18540,NA18545,NA18552,NA18555,NA18558,NA18563,NA18570,NA18571,NA18576,NA18579,NA18603,NA18608,NA18611,NA18612,NA18620,NA18624,NA18632,NA18635,NA18636,NA18637,NA18852,NA18853,NA18854,NA18855,NA18857,NA18858,NA18859,NA18861,NA18863,NA18870,NA18871,NA18912,NA18914,NA18940,NA18944,NA18948,NA18952,NA18953,NA18959,NA18961,NA18965,NA18966,NA18968,NA18969,NA18970,NA18975,NA18976,NA18981,NA18995,NA18997,NA19094,NA19098,NA19099,NA19100,NA19116,NA19120,NA19128,NA19129,NA19132,NA19137,NA19138,NA19139,NA19140,NA19143,NA19145,NA19152,NA19160,NA19171,NA19173,NA19192,NA19194,NA19202,NA19203,NA19205,NA19207,NA19208,NA19209,NA19210,NA19211,NA19221,NA19222,NA19223 dgv1825e1 5 99413870 99874154 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv8819,essv16208,essv20271,essv36,essv22321,essv7432,essv2466,essv2658,essv12272,essv10096,essv16965,essv4375,essv16708,essv6631,essv2204,essv16756,essv17933,essv809,essv350 M 271 0 0 "" NA06985,NA12003,NA12144,NA18508,NA18573,NA18621,NA18623,NA18872,NA18960,NA18967,NA18971,NA18973,NA18991,NA18999,NA19101,NA19130,NA19142,NA19144,NA19161 nsv10730 5 99423701 99438636 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12850,nssv16043,nssv14046,nssv14679,nssv13996 M 31 0 5 Samples from several populations that are part of the HapMap project. "" NA10863,NA12740,NA12802,NA18552,NA18972 essv7513 5 99452655 99692426 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18532 nsv471632 5 99457112 99629569 CNV Loss Sharp et al 2005 15918152 BAC_aCGH,FISH Eichler Segmental Duplication BAC array nssv550316,nssv550317 M 48 0 2 "" JK1061,NA10494 nsv523868 5 99486205 99693322 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699706 S 2026 0 1 "" essv6194 5 99529524 99834078 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18532 nsv10731 5 99538916 99548832 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14922 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18502 nsv525989 5 99552162 99693322 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702211 S 2026 0 1 "" dgv1826e1 5 99643308 99911270 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv16319,essv22952,essv19718,essv15133,essv19652,essv14593,essv19929,essv21035,essv11248,essv20669,essv14773,essv17261,essv23542,essv9419,essv15507 M 271 0 0 "" NA06991,NA06993,NA07357,NA12236,NA12264,NA12813,NA12892,NA18503,NA18505,NA19093,NA19129,NA19159,NA19193,NA19204,NA19208 nsv10732 5 99737509 99763528 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15674,nssv16073,nssv12880,nssv14106,nssv13878,nssv14588,nssv13635,nssv14709,nssv14026,nssv15417 M 31 0 10 Samples from several populations that are part of the HapMap project. "" NA10863,NA12155,NA12740,NA12802,NA18517,NA18537,NA18552,NA18564,NA18972,NA19132 nsv520372 5 99770263 99820978 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697378 S 2026 0 1 "" nsv818362 5 99770263 99820978 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415576,nssv1415577 M 112 0 2 "" NA10830,NA12236 essv21467 5 99782976 99892012 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA10830 esv33708 5 99830318 99838941 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99318 S 51 1 0 "" 22275 nsv818363 5 99926750 99934121 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417426 S 112 1 0 "" NA18952 dgv204n6 5 99951433 99951751 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv328583,nsv329996 M 24 "" nsv462319 5 100088049 100128056 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538521 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01248 nsv462320 5 100275453 100803506 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538522 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01030 nsv524773 5 100292249 100337065 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700764 S 2026 0 1 "" nsv525359 5 100292249 100377223 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701478 S 2026 0 1 "" nsv522908 5 100337065 100368305 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698567 S 2026 0 1 "" nsv818364 5 100337065 100368305 CNV Gain+Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417494,nssv1417505 M 112 1 1 "" NA12234,NA12264 nsv528811 5 100451980 101245986 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705485 S 2026 0 1 "" nsv516292 5 100518871 100953583 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv667385,nssv673058 M 2026 2 0 "" dgv1827e1 5 100535625 100788621 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv18130,esv805,essv24763 M 271 0 0 "" NA10860,NA11993 dgv1828e1 5 100570013 100684490 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv21361,essv18536 M 271 0 0 "" NA10860,NA11993 esv35075 5 100570751 100684431 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6986530,essv6978050 M 771 1 0 "" NA10860 nsv818365 5 100580349 100663004 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415838,nssv1415840 M 112 2 0 "" NA10860,NA11993 nsv10733 5 100662197 100670382 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15411 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18860 nsv4934 5 100754348 100788676 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2700 S 9 1 0 "" NA18555 nsv10734 5 100775951 100777569 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13888 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19144 nsv526905 5 100994618 101031711 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703265 S 2026 0 1 "" nsv327481 5 101011936 101011987 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346059 M 24 "" nsv518080 5 101047169 101115487 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695493 S 2026 1 0 "" nsv327841 5 101103542 101103542 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346419 M 24 "" nsv327926 5 101103551 101103551 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346504 M 24 "" dgv110n17 5 101178453 101238736 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437470,nsv437469,nsv437467 M 60 0 3 "" NA18500,NA18503,NA19139 nsv10735 5 101192106 101235511 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14952 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18502 nsv516220 5 101197157 101234268 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv680752,nssv681511,nssv691394,nssv688529,nssv689923,nssv683386,nssv659285,nssv690945,nssv689768,nssv666880 M 2026 0 10 "" nsv818366 5 101197157 101234268 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416933,nssv1416932 M 112 0 2 "" NA19137,NA19139 nsv442957 5 101201120 101234788 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv524531 5 101206213 101440511 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700481 S 2026 0 1 "" dgv1829e1 5 101207948 101233931 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv8981,essv9277,esv1381,essv10611,essv13344,essv8551,essv7935 M 271 0 0 "" NA18500,NA18503,NA19137,NA19139,NA19209,NA19211 nsv462321 5 101220592 101269177 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538523 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00894 nsv521790 5 101220592 101269177 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694559 S 2026 1 0 "" nsv462322 5 101230797 101289699 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538524 S 1557 1 0 "" NINDS_117 dgv349n21 5 101269177 101301550 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv528046,nsv521719 M 2026 0 2 "" esv33986 5 101320382 101390481 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100524 S 51 0 1 "" 22298 nsv507278 5 101375252 101381252 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621809,nssv620312 M 4 2 0 "" NA10860,NA15510 nsv523337 5 101392599 101440511 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699083 S 2026 1 0 "" nsv4935 5 101452430 101485914 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4853 S 9 1 0 "" NA19129 nsv520047 5 101569683 101594006 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv660279,nssv677776 M 2026 0 2 "" nsv507279 5 101618848 101624848 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620313,nssv621810 M 4 2 0 "" NA10860,NA15510 nsv522882 5 101624532 101810829 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698538 S 2026 0 1 "" nsv462324 5 101661509 101757403 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538525 S 1557 1 0 "" 1780862300_A nsv830427 5 101679409 101877622 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444926 S 95 1 0 "" nsv462325 5 101680150 101772918 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538526 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00828 dgv350n21 5 101729823 101823389 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv519686,nsv526352 M 2026 2 0 "" nsv830428 5 101825141 101986690 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444930,nssv1444928,nssv1444927 M 95 1 2 "" nsv517637 5 101952673 101960316 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv677248,nssv680116,nssv673539,nssv666402,nssv662365,nssv659856,nssv684765,nssv656523,nssv679811,nssv668429,nssv652636,nssv692523,nssv667981,nssv655760,nssv655219,nssv682357,nssv677100,nssv671078 M 2026 0 18 "" nsv830429 5 102163810 102287074 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444935,nssv1444932,nssv1444938,nssv1444941,nssv1444934,nssv1444942,nssv1444933,nssv1444937,nssv1444936,nssv1444931,nssv1444939 M 95 11 0 "" dgv205n6 5 102191254 102191525 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv327492,nsv329899 M 24 "" nsv830430 5 102359806 102519831 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444943,nssv1444944 M 95 2 0 "" nsv4936 5 102605841 102635616 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10465 S 9 1 0 "" NA18956 nsv507280 5 102631936 102637936 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620314 S 4 1 0 "" NA15510 nsv511112 5 102738651 102754579 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621586 S 4 0 0 "" NA15510 nsv328355 5 102901094 102901094 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346933 M 24 "" nsv524180 5 102953567 102961294 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700062 S 2026 0 1 "" nsv830431 5 103004389 103169223 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444945 S 95 1 0 "" nsv516653 5 103041827 103042663 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv661697,nssv669907 M 2026 0 2 "" nsv329801 5 103058467 103058791 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv348379 M 24 "" nsv329148 5 103090210 103090525 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347726 M 24 "" nsv830432 5 103116060 103308142 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444946 S 95 0 1 "" nsv4937 5 103201611 103234918 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8128 S 9 1 0 "" NA12156 nsv4938 5 103251991 103276679 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3374 S 9 1 0 "" NA12878 dgv716n27 5 103253073 103286835 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv462326,nsv462327 M 1557 0 2 "" HGDP00189,NINDS_42 nsv462329 5 103272539 103292886 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538529 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00124 nsv509079 5 103415180 103449176 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620828 S 4 1 0 "" NA15510 nsv462332 5 103471055 103478689 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538530 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00855 nsv516240 5 103471055 103478689 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv660498,nssv652664,nssv684939,nssv680195 M 2026 0 4 "" nsv462333 5 103490533 103519662 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538531 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01318 nsv508373 5 103491934 103515290 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618776 S 4 0 1 "" NA10860 nsv507281 5 103501686 103507686 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620315,nssv617684 M 4 2 0 "" CHM,NA15510 dgv1830e1 5 103511683 103661467 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv23037,esv447,essv5502 M 271 0 0 "" NA12812,NA18632 nsv4939 5 103526050 103560950 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv482 S 9 1 0 "" NA19240 nsv10736 5 103530858 103532361 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14134,nssv15990 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA10839,NA19221 nsv517638 5 103548859 103561783 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv663381,nssv667691,nssv693215,nssv688975,nssv671270,nssv656748,nssv693194,nssv658353,nssv662112,nssv652637 M 2026 0 10 "" nsv818368 5 103548859 103561783 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416066 S 112 0 1 "" NA12812 nsv518283 5 103674913 103704240 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695714 S 2026 0 1 "" nsv462336 5 103674913 103752969 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538532 S 1557 0 1 "" NINDS_222 nsv516583 5 103701379 103704240 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv669363,nssv681472,nssv655636 M 2026 0 3 "" nsv519706 5 103729578 103822621 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv657725,nssv684940,nssv682630,nssv672849,nssv705045 M 2026 1 4 "" nsv4940 5 103840363 103925125 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3375,nssv10466,nssv11107,nssv6016,nssv483 M 9 0 5 "" NA12156,NA12878,NA15510,NA18956,NA19240 nsv508374 5 103879660 103901295 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619961 S 4 0 1 "" NA15510 nsv274 5 103880569 103907829 CNV Loss Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv274 S 1 0 1 "" NA15510 dgv206n6 5 103882174 103888239 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv329399,nsv327605 M 24 "" nsv830433 5 103890873 104011391 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444947,nssv1444949,nssv1444948 M 95 3 0 "" nsv462337 5 103934043 103999745 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538533 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00460 nsv523044 5 103940522 103953109 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698727 S 2026 0 1 "" esv2752054 5 103949569 104317465 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6989221,essv6987910,essv6981093,essv6981092,essv6981091 M 771 0 1 "" BEC_351 dgv1831e1 5 103967573 104010013 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv12432,esv1198 M 271 0 0 "" NA19152 essv9482 5 103989195 104010013 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19154 nsv519921 5 104016997 104155541 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704561,nssv705202,nssv692758,nssv659509 M 2026 0 4 "" nsv830434 5 104087263 104270295 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444950 S 95 1 0 "" nsv462340 5 104114206 104133020 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538534 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00811 nsv523593 5 104118535 104282479 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699384 S 2026 0 1 "" nsv4941 5 104144379 104177757 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2701 S 9 1 0 "" NA18555 nsv4942 5 104190590 104223672 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3376 S 9 1 0 "" NA12878 dgv1832e1 5 104226158 104322489 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1426,essv18535 M 271 0 0 "" NA11993 nsv521060 5 104233891 104253771 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697762 S 2026 0 1 "" nsv462341 5 104235912 104259193 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538535 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01286 nsv818369 5 104248483 104282479 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415841 S 112 1 0 "" NA11993 nsv522085 5 104296736 104302739 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694130 S 2026 0 1 "" nsv818370 5 104300738 104324560 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417991 S 112 0 1 "" NA07357 essv20745 5 104301300 104322489 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA07357 esv2422257 5 104308074 104380631 CNV Deletion Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161554 S 181 0 1 "" ND04484 dgv1833e1 5 104334472 104660077 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv23445,essv21847,esv615,essv23236 M 271 0 0 "" NA07029,NA10854,NA11839 nsv526149 5 104383282 104401279 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702408 S 2026 0 1 "" dgv351n21 5 104422173 104466657 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv518634,nsv519527,nsv522022 M 2026 0 3 "" nsv4944 5 104447361 104542241 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3377 S 9 0 1 "" NA12878 essv21093 5 104452196 104556024 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA10854 nsv10737 5 104453469 104532744 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13502 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA07029 dgv111n17 5 104453519 104562047 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv436985,nsv436984 M 60 0 2 "" NA10854,NA12878 nsv469797 5 104455682 104605683 CNV Gain Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649818 M 265 6 0 Samples from several populations that are part of the HapMap project. "" nsv433231 5 104460010 104501925 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463112 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA12878 dgv717n27 5 104460010 104518786 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv462343,nsv462342,nsv462345,nsv462344 M 1557 0 4 "" 1780862123_A,1780862516_A,1780862530_A,HGDP00041 nsv517325 5 104460010 104518786 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv676474,nssv659472,nssv663059,nssv690946,nssv688751,nssv674176,nssv688495,nssv674988,nssv669071,nssv689944,nssv670013,nssv688129,nssv681724,nssv668281,nssv677412,nssv672968,nssv686038,nssv676451,nssv651723,nssv672406,nssv688868,nssv666798 M 2026 0 22 "" nsv818371 5 104460010 104518786 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417022,nssv1417021,nssv1416155,nssv1416156 M 112 0 4 "" NA06994,NA07029,NA12878,NA12892 esv33504 5 104461570 104528473 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv92974,essv93708 M 51 0 2 "" 21939,21972 nsv442959 5 104464614 104506104 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv718n27 5 104464778 104591075 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv462357,nsv462359,nsv462358,nsv462346,nsv462347 M 1557 0 5 "" 1780854536_A,1780862194_A,1780862310_A,1782681169_A,HGDP00153 nsv462348 5 104464778 104667691 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538542 S 1557 0 1 "" 1780862014_A dgv1834e1 5 104475298 104522482 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv20451,essv25062 M 271 0 0 "" NA06994,NA12892 dgv1835e1 5 104475298 104555970 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv18024,essv25165 M 271 0 0 "" NA11839,NA12878 nsv327849 5 104501166 104509076 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346427 M 24 "" nsv433476 5 104507657 104514704 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463357 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA12878 nsv4945 5 104533957 104566897 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4854 S 9 1 0 "" NA19129 nsv818372 5 104537653 104580203 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416352 S 112 0 1 "" NA18855 nsv830435 5 104556562 104726814 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444952,nssv1444954,nssv1444955,nssv1444953 M 95 3 1 "" nsv462367 5 104558803 104675112 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538547 S 1557 0 1 "" NINDS_156 nsv524355 5 104571804 104682824 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700264 S 2026 0 1 "" nsv329930 5 104618843 104619164 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv348508 M 24 "" dgv1836e1 5 104685688 104853617 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv4845,esv4,essv9457 M 271 0 0 "" NA18540,NA19208 nsv520632 5 104812301 104840651 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv678776,nssv673364 M 2026 0 2 "" nsv10738 5 104847112 104849492 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16020 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19221 nsv509986 5 104900801 104906801 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622097,nssv623985,nssv618214 M 4 0 3 "" CHM,NA10860,NA18994 nsv328392 5 104904952 104905040 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346970 M 24 "" nsv329885 5 104994811 104995161 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv348463 M 24 "" nsv523866 5 104997857 105020813 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699704 S 2026 0 1 "" nsv328214 5 105114394 105114453 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346792 M 24 "" nsv4946 5 105147941 105192455 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4602 S 9 0 1 "" NA19129 nsv4947 5 105149153 105181826 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2536 S 9 1 0 "" NA18555 nsv830436 5 105220169 105431652 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444956 S 95 0 1 "" nsv830438 5 105364289 105526590 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444957 S 95 1 0 "" dgv719n27 5 105383789 105433773 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv462370,nsv462371,nsv462369 M 1557 0 3 "" HGDP00738,HGDP00926,HGDP01345 nsv517604 5 105415344 105426374 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv652487,nssv685607 M 2026 0 2 "" nsv527384 5 105426374 105437543 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703819 S 2026 1 0 "" nsv462373 5 105535442 105823874 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538552 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00450 nsv517250 5 105663724 105667441 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv654122,nssv691716 M 2026 0 2 "" nsv527460 5 105663724 105691545 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703902 S 2026 0 1 "" nsv327704 5 105751175 105751362 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346282 M 24 "" nsv521978 5 105894761 105923201 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694745 S 2026 0 1 "" nsv524260 5 105904705 105932644 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700157 S 2026 0 1 "" nsv521076 5 105922009 105932644 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv681313,nssv689294,nssv686583 M 2026 0 3 "" nsv509081 5 105953853 106009948 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620829 S 4 1 0 "" NA15510 nsv462375 5 105977314 106027095 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538553 S 1557 0 1 "" 1780862459_A nsv523789 5 105995027 106000047 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699616 S 2026 0 1 "" esv2752055 5 106062696 106308414 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6982930,essv6982929 M 771 0 1 "" BEC_527 nsv4948 5 106111810 106145622 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8129 S 9 1 0 "" NA12156 nsv818373 5 106183437 106243338 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418455 S 112 0 1 "" NA19193 nsv462377 5 106186994 106243338 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538554 S 1557 0 1 "" NINDS_146 nsv830439 5 106219937 106411727 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444958 S 95 1 0 "" nsv518559 5 106251435 106288520 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696002 S 2026 0 1 "" nsv818374 5 106251435 106288520 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418069 S 112 0 1 "" NA11882 dgv1837e1 5 106255008 106286649 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv938,essv24320 M 271 0 0 "" NA11882 nsv10740 5 106255267 106268927 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13657 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA11830 nsv441960 5 106257572 106261016 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv525317 5 106335907 106339147 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701426 S 2026 0 1 "" esv2752056 5 106450548 106591000 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6986209,essv6982606,essv6982605,essv6982604,essv6986210 M 771 1 0 "" BEC_57 dgv1838e1 5 106519625 106579710 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv5274,esv193,essv22887 M 271 0 0 "" NA12760,NA18624 nsv517277 5 106681224 106688429 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv693964,nssv654189 M 2026 0 2 "" nsv519799 5 106725384 106725750 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv688893,nssv658771 M 2026 0 2 "" nsv527761 5 106753590 106756485 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704248 S 2026 0 1 "" nsv462379 5 106817663 106834337 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538555 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01278 nsv328216 5 106839658 106839658 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346794 M 24 "" nsv328213 5 106920823 106920923 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346791 M 24 "" nsv4949 5 107030590 107064287 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2702 S 9 1 0 "" NA18555 nsv830440 5 107102015 107306804 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444959 S 95 1 0 "" nsv329767 5 107189596 107193077 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv348345 M 24 "" nsv328163 5 107190762 107190978 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346741 M 24 "" nsv518663 5 107205280 107223723 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696113 S 2026 0 1 "" nsv327830 5 107365805 107368693 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346408 M 24 "" nsv830441 5 107478291 107642456 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444960 S 95 0 1 "" nsv518369 5 107487428 107497423 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695795 S 2026 0 1 "" nsv830442 5 107567049 107724919 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444961 S 95 1 0 "" nsv4950 5 107615677 107665247 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv484 S 9 0 1 "" NA19240 nsv509987 5 107820212 107826212 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618215 S 4 0 1 "" CHM nsv4951 5 107930446 107964622 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8130 S 9 1 0 "" NA12156 nsv329657 5 107991694 107991694 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv348235 M 24 "" nsv523619 5 108027404 108044681 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699416 S 2026 1 0 "" nsv327356 5 108207774 108207774 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv345934 M 24 "" nsv525993 5 108316244 108327643 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702218 S 2026 0 1 "" nsv4952 5 108352045 108397252 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8132 S 9 0 1 "" NA12156 nsv830443 5 108354390 108524622 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444964 S 95 1 0 "" nsv4953 5 108471804 108516646 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8133 S 9 0 1 "" NA12156 nsv509988 5 108475721 108481721 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621267 S 4 0 1 "" NA15510 nsv4955 5 108605845 108639751 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9673,nssv2537,nssv4855,nssv485 M 9 0 4 "" NA18507,NA18555,NA19129,NA19240 nsv508375 5 108615527 108651945 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622530 S 4 0 1 "" NA18994 nsv328917 5 108622974 108629020 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347495 M 24 "" nsv327359 5 108716433 108716749 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv345937 M 24 "" nsv328528 5 108786330 108786387 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347106 M 24 "" nsv519138 5 108842980 108844477 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696616 S 2026 0 1 "" nsv462380 5 109076032 109161367 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538556 S 1557 0 1 "" 1782681080_A nsv327532 5 109078904 109078904 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346110 M 24 "" nsv830444 5 109254707 109396677 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444965 S 95 0 1 "" nsv520885 5 109291648 109333621 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697670 S 2026 0 1 "" nsv521487 5 109296474 109322362 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698098 S 2026 1 0 "" dgv207n6 5 109324989 109325323 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv329167,nsv329168 M 24 "" nsv462382 5 109327045 109447617 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538557 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00100 nsv527271 5 109371755 109429310 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703681 S 2026 0 1 "" nsv516335 5 109386880 109403379 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv667665,nssv671026,nssv697452,nssv691683,nssv673641,nssv659455,nssv689364,nssv689545,nssv689428 M 2026 0 9 "" esv33005 5 109394663 109403596 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98488 S 51 0 1 "" 22352 nsv436986 5 109417669 109421729 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv466867 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA12753 nsv436987 5 109448930 109454399 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv466868 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA10839 nsv437954 5 109452450 109453291 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv468706,nssv468705 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA10839,NA12005 nsv523477 5 109461790 109506683 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699240 S 2026 0 1 "" nsv4956 5 109492318 109523678 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9883,nssv3378,nssv10468,nssv486,nssv2703,nssv6017 M 9 6 0 "" NA12156,NA12878,NA18507,NA18555,NA18956,NA19240 nsv509082 5 109500637 109526781 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620830,nssv618043,nssv623452 M 4 3 0 "" CHM,NA15510,NA18994 nsv527275 5 109506683 109511559 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703685 S 2026 1 0 "" nsv522011 5 109506683 109514960 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694780 S 2026 1 0 "" nsv462384 5 109506683 109527102 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538559 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00144 nsv521017 5 109510944 109533707 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv679959,nssv693536 M 2026 0 2 "" essv22481 5 109669759 110056060 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA11882 dgv1839e1 5 109669759 110180038 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv862,essv24332 M 271 0 0 "" NA11882 nsv10741 5 109724498 109725790 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15477 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19132 nsv830445 5 109724665 109931165 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444966 S 95 1 0 "" nsv818375 5 109783199 110084156 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418071 S 112 0 1 "" NA11882 esv34732 5 109793062 110093410 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6987411,essv6987410,essv6978535,essv6978534 M 771 0 1 "" NA11882 nsv10742 5 109793976 109802884 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15507,nssv16050,nssv13670,nssv15704 M 31 0 4 Samples from several populations that are part of the HapMap project. "" NA18517,NA18853,NA19132,NA19221 nsv10743 5 109879999 109882188 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15537,nssv15283,nssv14189 M 31 3 0 Samples from several populations that are part of the HapMap project. "" NA18504,NA19132,NA19173 nsv525752 5 109974310 110116146 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701919 S 2026 0 1 "" nsv4957 5 110010902 110035840 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8134 S 9 0 1 "" NA12156 nsv830446 5 110059905 110166245 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444967 S 95 0 1 "" nsv830447 5 110213987 110439873 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444968 S 95 0 1 "" nsv528857 5 110383304 110392349 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705536 S 2026 0 1 "" nsv507282 5 110446732 110452732 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620317,nssv622949,nssv621811 M 4 3 0 "" NA10860,NA15510,NA18994 nsv519338 5 110455246 110467408 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv655481,nssv678407,nssv692476 M 2026 3 0 "" nsv518727 5 110696599 110906451 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696177 S 2026 1 0 "" nsv328700 5 110722842 110723163 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347278 M 24 "" nsv830449 5 110777890 110949107 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444970,nssv1444969 M 95 1 1 "" nsv462385 5 110933970 110938684 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538560 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00264 nsv517462 5 110933970 110938684 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694073,nssv682579,nssv671860,nssv702687,nssv678929,nssv675269,nssv677513,nssv653941,nssv682468,nssv686607,nssv665049,nssv684033,nssv670104,nssv662281,nssv656864,nssv675798,nssv691032,nssv684281,nssv670421,nssv654064,nssv659117,nssv666083,nssv661078,nssv691395,nssv690329,nssv668819,nssv654889,nssv681746,nssv658772,nssv659484,nssv667982,nssv669256,nssv673495,nssv673881,nssv686533,nssv673689,nssv680921,nssv685466,nssv681314,nssv665618,nssv672086,nssv674177,nssv656339,nssv681877,nssv653869,nssv656524,nssv676758,nssv685306,nssv674510,nssv680753,nssv684766,nssv687897,nssv674725,nssv689317,nssv676941,nssv691853,nssv682990,nssv667531,nssv655091,nssv684578,nssv658076,nssv666524 M 2026 0 62 "" nsv818376 5 110933970 110938684 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418271,nssv1418269,nssv1416737 M 112 0 3 "" NA19092,NA19094,NA19160 nsv441961 5 110937230 110938944 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv507283 5 110953204 110959204 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622950,nssv621812,nssv617685,nssv620318 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv327171 5 111018651 111018900 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv345749 M 24 "" nsv520213 5 111021804 111030720 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697284 S 2026 0 1 "" nsv4958 5 111045979 111078787 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv487 S 9 1 0 "" NA19240 nsv328351 5 111048922 111055924 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346929 M 24 "" nsv517988 5 111440235 111459912 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695400 S 2026 0 1 "" nsv521846 5 111459912 111472421 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694620 S 2026 0 1 "" nsv519077 5 111534650 111546917 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696549 S 2026 0 1 "" nsv462386 5 111695471 111727216 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538561 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00732 nsv437471 5 111710553 111719823 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467352 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19211 nsv519008 5 111727216 111729809 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696477 S 2026 0 1 "" nsv509989 5 111929361 111935361 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621268 S 4 0 1 "" NA15510 nsv515854 5 111970668 111971451 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv671271,nssv665021,nssv675969,nssv656265,nssv680248,nssv665697,nssv659372,nssv678825,nssv688845 M 2026 0 9 "" nsv524230 5 111970668 111972372 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700119 S 2026 0 1 "" nsv830450 5 111992069 112162409 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444971,nssv1444972 M 95 2 0 "" nsv462387 5 112081810 112152268 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538562 S 1557 0 1 "" NINDS_145 esv33290 5 112138707 112266194 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99910,essv94153 M 51 1 1 "" 22086,22394 nsv4959 5 112178131 112197746 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3379 S 9 1 0 "" NA12878 nsv4960 5 112228098 112246198 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8135 S 9 0 1 "" NA12156 nsv509990 5 112394102 112400102 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618216 S 4 0 1 "" CHM nsv516887 5 112407558 112424073 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv689983,nssv654713 M 2026 0 2 "" nsv528441 5 112434761 112436843 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705036 S 2026 0 1 "" nsv329870 5 112505730 112506268 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv348448 M 24 "" nsv471785 5 112651770 112652111 CNV Loss Hinds et al 2006 16327809 Oligo_aCGH,PCR Custom Perlegen arrays nssv646066 M 0.021 95 "" nsv528805 5 112669549 112678650 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705479 S 2026 0 1 "" nsv329948 5 112782023 112783736 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv348526 M 24 "" dgv208n6 5 112909316 112909649 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv327138,nsv327129 M 24 "" nsv520674 5 112939064 112970719 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv673855,nssv678035,nssv690687 M 2026 3 0 "" esv2752057 5 112944297 112973891 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6983663,essv6983662 M 771 1 0 "" BEC_678 nsv4961 5 112973807 113019051 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8136 S 9 0 1 "" NA12156 nsv519536 5 112991387 113006470 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv656736,nssv679861,nssv699439 M 2026 0 3 "" dgv720n27 5 112993044 113010549 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv462389,nsv462388 M 1557 0 2 "" HGDP00642,HGDP00722 nsv462390 5 113103994 113209188 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538565 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00991 nsv507284 5 113146656 113152656 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617686 S 4 1 0 "" CHM nsv462391 5 113162633 113212110 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538566 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00808 nsv516041 5 113188389 113197319 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv659040,nssv676303,nssv663819,nssv665297,nssv662908,nssv652442,nssv684956,nssv674957,nssv663564,nssv705641,nssv663803,nssv688725,nssv692455,nssv671351,nssv675775,nssv689862,nssv668856,nssv665566,nssv668317,nssv680020,nssv682158,nssv669908,nssv655721,nssv688596 M 2026 0 24 "" nsv462397 5 113355460 113363129 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538569 S 1557 0 1 "" 1780862227_A nsv515486 5 113355460 113363129 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv665340,nssv680633,nssv652292,nssv679812,nssv677176,nssv665022,nssv681771,nssv679343,nssv684108,nssv668645,nssv651830,nssv684807,nssv660038,nssv669810,nssv678578,nssv694022,nssv651742,nssv680233 M 2026 0 18 "" nsv327885 5 113486937 113487259 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346463 M 24 "" nsv521754 5 113535053 113543706 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694521 S 2026 0 1 "" nsv4962 5 113551960 113586845 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3380 S 9 1 0 "" NA12878 nsv328651 5 113594216 113596726 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347229 M 24 "" nsv328147 5 113605348 113605397 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346725 M 24 "" nsv830451 5 113712200 113857732 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444975,nssv1444973 M 95 1 1 "" nsv830452 5 113826516 114003127 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444976 S 95 0 1 "" esv33387 5 114041728 114043755 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv94148 S 51 0 1 "" 22394 nsv519511 5 114043490 114043669 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv656499,nssv693018,nssv672573,nssv679526,nssv663382 M 2026 0 5 "" nsv528757 5 114149797 114155692 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705419 S 2026 0 1 "" nsv441962 5 114235601 114238777 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv4963 5 114262330 114316296 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4856,nssv9412,nssv488 M 9 0 3 "" NA18517,NA19129,NA19240 nsv830453 5 114305160 114574435 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444977 S 95 1 0 "" nsv508376 5 114341432 114364430 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622531 S 4 0 1 "" NA18994 nsv4964 5 114346575 114387197 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4857,nssv10469,nssv2538 M 9 0 3 "" NA18555,NA18956,NA19129 nsv327353 5 114421570 114421836 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv345931 M 24 "" nsv519235 5 114432705 114435560 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696726 S 2026 0 1 "" nsv462398 5 114472922 114503673 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538570 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00356 nsv830454 5 114481763 114635058 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444981,nssv1444980,nssv1444979,nssv1444978 M 95 1 3 "" dgv1840e1 5 114725159 114750943 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv6091,essv750,essv5671 M 271 0 0 "" NA18605,NA18621,NA19003 dgv1841e1 5 114725159 114765482 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv104,esv915 M 271 0 0 "" NA19005 nsv441963 5 114734342 114748984 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv205e55 5 114737000 114750943 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv34634,esv34270,esv34713 M 771 0 3 "" NA18605,NA18621,NA19005 nsv527955 5 114755848 114755972 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704465 S 2026 0 1 "" nsv329207 5 114767636 114767636 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347785 M 24 "" nsv471786 5 114784042 114785803 CNV Loss Hinds et al 2006 16327809 Oligo_aCGH,PCR Custom Perlegen arrays nssv646067 M 2.564 95 "" dgv209n6 5 114784398 114785805 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv330072,nsv327607 M 24 "" nsv442960 5 114784536 114787066 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv830455 5 114789441 114966183 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444982 S 95 1 0 "" nsv329184 5 115158357 115158705 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347762 M 24 "" nsv515611 5 115236742 115456280 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv664486,nssv680377,nssv687597,nssv702833,nssv681585,nssv700710,nssv691124,nssv679600,nssv664092,nssv679527,nssv663527 M 2026 3 8 "" nsv527320 5 115409996 115601442 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703745 S 2026 0 1 "" nsv509991 5 115451958 115457958 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622098 S 4 0 1 "" NA10860 nsv4967 5 115464273 115478809 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4858 S 9 1 0 "" NA19129 nsv10744 5 115526586 115537257 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14618 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA12155 esv33800 5 115529643 115529796 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv95745 S 51 0 1 "" 21841 esv32605 5 115536176 115536257 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93194 S 51 1 0 "" 22170 dgv1842e1 5 115543618 115571522 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1399,essv9301 M 271 0 0 "" NA18852 esv33867 5 115543885 115544053 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93969 S 51 1 0 "" 21802 nsv524812 5 115545137 115612058 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700805 S 2026 0 1 "" nsv10745 5 115547417 115569863 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16080,nssv15471 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18860,NA19221 nsv527484 5 115547653 115548510 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703931 S 2026 0 1 "" esv2752058 5 115560964 115633097 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6984242,essv6989420 M 771 0 1 "" BEC_817 nsv519321 5 115569462 115612058 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv655411,nssv692037,nssv661305,nssv688176 M 2026 0 4 "" nsv462401 5 115569462 115637451 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538571 S 1557 0 1 "" NINDS_23 nsv521050 5 115569462 115645196 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697754 S 2026 0 1 "" esv34428 5 115603412 115654865 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6987863,essv6989203 M 771 0 1 "" NA19137 dgv1843e1 5 115606709 115661373 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv12917,essv8391,esv1394 M 271 0 0 "" NA19093,NA19094 nsv328049 5 115619365 115619425 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346627 M 24 "" nsv462402 5 115624019 115637451 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538572 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00935 nsv517704 5 115624019 115645196 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv678851,nssv652904,nssv698205,nssv680754,nssv677926,nssv658894,nssv683654,nssv672990,nssv664740,nssv682067,nssv692559,nssv689588,nssv665460,nssv659205,nssv658508,nssv686187,nssv682002 M 2026 0 17 "" nsv818377 5 115624019 115645196 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418272,nssv1418273,nssv1418274,nssv1418456,nssv1418457,nssv1416934 M 112 0 6 "" NA19092,NA19093,NA19094,NA19137,NA19192,NA19194 dgv1844e1 5 115624176 115654865 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv9289,essv15167,essv11400,essv10975 M 271 0 0 "" NA19092,NA19137,NA19192,NA19210 esv34342 5 115624176 115654865 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6978397,essv6987383 M 771 0 1 "" NA19092 essv8988 5 115624176 115661373 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19194 nsv442961 5 115624233 115653127 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv10746 5 115637817 115644918 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15501,nssv13555 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18860,NA18980 nsv4968 5 115663670 115742755 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10470,nssv8137 M 9 0 2 "" NA12156,NA18956 nsv523400 5 115752265 115753690 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699151 S 2026 1 0 "" nsv522616 5 115753690 115772414 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv706012 S 2026 0 1 "" nsv4969 5 115781818 115795752 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8138 S 9 0 1 "" NA12156 nsv518494 5 115892477 115897159 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695934 S 2026 0 1 "" dgv210n6 5 115922036 115922368 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv330086,nsv328233 M 24 "" nsv830456 5 115996965 116198617 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444983 S 95 1 0 "" nsv527974 5 116015067 116331577 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704489 S 2026 1 0 "" nsv328841 5 116154387 116155917 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347419 M 24 "" nsv329267 5 116213646 116216241 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347845 M 24 "" nsv327154 5 116249973 116250031 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv345732 M 24 "" nsv4970 5 116373388 116418482 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8139 S 9 0 1 "" NA12156 nsv4971 5 116416004 116441544 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3382 S 9 1 0 "" NA12878 nsv830457 5 116752676 116902959 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444984 S 95 1 0 "" nsv329045 5 116814420 116814420 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347623 M 24 "" nsv526109 5 116852349 116853251 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702357 S 2026 0 1 "" nsv830458 5 116859646 117030940 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444987,nssv1444986 M 95 0 2 "" nsv328110 5 116863978 116864283 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346688 M 24 "" nsv519949 5 117033589 117083044 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv659757,nssv659600 M 2026 0 2 "" nsv528758 5 117211812 117214194 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705420 S 2026 0 1 "" nsv830460 5 117310662 117475956 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1444991,nssv1445002,nssv1445001,nssv1444990,nssv1444989,nssv1444992,nssv1444994,nssv1444998,nssv1444995,nssv1444993,nssv1444997,nssv1445000,nssv1444988,nssv1444999 M 95 14 0 "" nsv462404 5 117327620 117359443 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538573 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00759 nsv507285 5 117332413 117338413 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622951,nssv620319 M 4 2 0 "" NA15510,NA18994 nsv4972 5 117393468 117438314 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9674,nssv8140,nssv3383 M 9 0 3 "" NA12156,NA12878,NA18507 nsv328859 5 117409638 117409988 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347437 M 24 "" nsv471787 5 117414031 117422032 CNV Loss Hinds et al 2006 16327809 Oligo_aCGH,PCR Custom Perlegen arrays nssv646068 M 0.602 95 "" nsv517540 5 117414333 117428678 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv672427,nssv654547,nssv666181,nssv693110,nssv665237,nssv658509,nssv682141,nssv651695,nssv672903,nssv652696,nssv663327,nssv676698,nssv671110,nssv682068,nssv684371,nssv686027,nssv665023,nssv665502,nssv658390,nssv681611,nssv656061,nssv659161,nssv671687,nssv673574,nssv664928,nssv654106,nssv652583,nssv684325,nssv658895,nssv686727,nssv662662,nssv657145,nssv686506,nssv652985,nssv655761,nssv688801,nssv689984,nssv676122,nssv658773,nssv677679,nssv673517,nssv677988,nssv682868,nssv660905,nssv674511,nssv659541,nssv656660,nssv679055,nssv689769,nssv693388,nssv674704,nssv657563,nssv680173,nssv672087,nssv691659,nssv666702,nssv674546,nssv655220,nssv664237,nssv657426,nssv668439,nssv689722,nssv661256,nssv672794,nssv686584,nssv666904,nssv678057,nssv673421,nssv656078,nssv682912,nssv673059,nssv692266,nssv688053,nssv658436,nssv653582,nssv655338,nssv669123,nssv676492,nssv685018,nssv676475,nssv684243,nssv671450,nssv684409,nssv663253,nssv680268,nssv654060,nssv680755,nssv669662,nssv678518,nssv680940,nssv658266,nssv679847,nssv688976,nssv667269,nssv677601,nssv676595,nssv655645,nssv691780,nssv682746,nssv669482,nssv674838,nssv655976,nssv689343,nssv666799,nssv670516,nssv684201,nssv657171,nssv682406,nssv665619,nssv685105,nssv655044,nssv674178,nssv691811,nssv691854,nssv685275,nssv687057,nssv665842,nssv678887,nssv659857,nssv685968,nssv670125,nssv653062,nssv672407,nssv663861,nssv686039,nssv684217,nssv680602,nssv692385,nssv692616,nssv659945,nssv652207,nssv669839,nssv684767,nssv655288,nssv655890,nssv686819,nssv681959,nssv657401,nssv684683,nssv652728,nssv683387,nssv677539,nssv691823,nssv661353,nssv671064,nssv667630,nssv665735,nssv673909,nssv677740,nssv660722,nssv657057,nssv681143,nssv665810,nssv659671,nssv684957,nssv685053,nssv669629,nssv666635,nssv686315,nssv675235,nssv679649,nssv673318,nssv652123,nssv655793,nssv660021,nssv680981,nssv673410,nssv679304,nssv677821,nssv692131,nssv691070,nssv667922,nssv690351,nssv688846,nssv653041,nssv669716,nssv690198,nssv663197,nssv654733,nssv654577,nssv673623,nssv670633,nssv684109,nssv691489,nssv691517,nssv661425,nssv681855,nssv683763,nssv682523,nssv653688,nssv690634,nssv676898,nssv677459,nssv688752,nssv688530,nssv664385,nssv670764,nssv670455,nssv656103,nssv693552,nssv682386,nssv680297,nssv655433,nssv685494,nssv671945,nssv670618,nssv680862,nssv653489,nssv678972,nssv662989,nssv679833,nssv675095,nssv688938,nssv674726,nssv678130,nssv690801,nssv666482,nssv677071,nssv681654,nssv669538,nssv685566,nssv675391,nssv668910,nssv692717,nssv652242,nssv666736,nssv675737,nssv655917,nssv669311,nssv654246,nssv681264,nssv678463,nssv669020,nssv651753,nssv686455,nssv689248,nssv675949,nssv671834,nssv683865,nssv658830,nssv668835,nssv688558,nssv672144,nssv655531,nssv654075,nssv684443,nssv661180,nssv678649,nssv671352,nssv652783,nssv687181,nssv687782,nssv652258,nssv684838,nssv668084,nssv665367,nssv667803,nssv696958,nssv675379,nssv692432,nssv664068,nssv654649,nssv653961,nssv658308,nssv670051,nssv659617,nssv660845,nssv672394,nssv695961,nssv671272,nssv674318,nssv659826,nssv666035,nssv690662,nssv682456,nssv680620,nssv664126,nssv660292,nssv688640,nssv654040,nssv666441,nssv685985,nssv661126,nssv653512,nssv679906,nssv667776,nssv672686,nssv673856,nssv687454,nssv651832,nssv669440,nssv666501,nssv704253,nssv692759,nssv676942,nssv653734,nssv655566,nssv665069,nssv672382,nssv657445,nssv683404,nssv651749,nssv667071,nssv684537,nssv673733,nssv693580,nssv671027,nssv672476,nssv653909,nssv685446,nssv667581,nssv682890,nssv676798,nssv690614,nssv685825,nssv677327,nssv683198,nssv684787,nssv689684,nssv662634,nssv670422,nssv652905,nssv693216,nssv664045,nssv653005,nssv662366,nssv676523,nssv675512,nssv685424,nssv693043,nssv674419,nssv686370,nssv654331,nssv688584,nssv678714,nssv675748,nssv666159,nssv692285,nssv689468,nssv662435,nssv659092,nssv676222,nssv680325,nssv674032,nssv684231,nssv680722,nssv658524,nssv656290,nssv689613,nssv686267,nssv690556,nssv670593,nssv684481,nssv670143,nssv672219,nssv677000,nssv681512 M 2026 6 351 "" dgv721n27 5 117418263 117421055 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv462409,nsv462407,nsv462419,nsv462410,nsv462415,nsv462411,nsv462414,nsv462420,nsv462405,nsv462412,nsv462416,nsv462413,nsv462408,nsv462418 M 1557 0 14 "" 1798860210_A,HGDP00027,HGDP00328,HGDP00574,HGDP00577,HGDP00727,HGDP00914,HGDP01279,HGDP01282,HGDP01384,NINDS_130,NINDS_171,NINDS_186,NINDS_45 nsv818379 5 117418263 117421055 CNV Gain+Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416545,nssv1415706,nssv1416544,nssv1416158,nssv1415695,nssv1417866,nssv1415648,nssv1416640,nssv1415759,nssv1417867,nssv1418151,nssv1416738,nssv1416639,nssv1416740,nssv1416157,nssv1416240 M 112 1 15 "" NA12056,NA12249,NA12874,NA12878,NA12892,NA18853,NA18854,NA19116,NA19119,NA19141,NA19142,NA19144,NA19159,NA19161,NA19171,NA19172 nsv818380 5 117418263 117428678 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416443 S 112 0 1 "" NA18516 nsv462421 5 117420110 117421055 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538590 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00796 nsv528177 5 117462739 117524321 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704727 S 2026 1 0 "" esv2422395 5 117470705 117915809 CNV Deletion Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161440 S 181 0 1 "" ND01277 nsv327381 5 117476999 117477073 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv345959 M 24 "" nsv525570 5 117527263 117527379 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701709 S 2026 0 1 "" esv33434 5 117553979 117554233 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99604 S 51 1 0 "" 22217 dgv1845e1 5 117692624 117970146 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv820,essv20576 M 271 0 0 "" NA07056 nsv526165 5 117758026 117791077 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702425 S 2026 0 1 "" nsv462422 5 117768444 118048605 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538591 S 1557 0 1 "" NINDS_2 nsv507286 5 117772938 117778938 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621813,nssv617687 M 4 2 0 "" CHM,NA10860 nsv519256 5 117776599 117791077 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694320 S 2026 0 1 "" essv24198 5 117813488 117892105 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA07056 nsv528521 5 117821408 117827706 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705131 S 2026 0 1 "" nsv525303 5 117838660 117867843 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701409 S 2026 0 1 "" dgv722n27 5 117871768 117995371 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv462424,nsv462425 M 1557 0 2 "" HGDP01191,HGDP01197 nsv328772 5 117925947 117925998 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347350 M 24 "" nsv526318 5 118238734 118249488 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702604 S 2026 0 1 "" nsv507287 5 118405205 118411205 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617688 S 4 1 0 "" CHM nsv511113 5 118465753 118494364 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618648 S 4 0 0 "" CHM nsv4973 5 118468045 118507627 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2539,nssv3384,nssv9884,nssv8141,nssv10471,nssv490,nssv4859,nssv11109 M 9 8 0 "" NA12156,NA12878,NA15510,NA18507,NA18555,NA18956,NA19129,NA19240 nsv509083 5 118471353 118494364 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623454,nssv619420,nssv620831 M 4 3 0 "" NA10860,NA15510,NA18994 nsv275 5 118479467 118502561 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv275 S 1 1 0 "" NA15510 dgv1846e1 5 118583762 118695647 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv5777,esv1063 M 271 0 0 "" NA18540 nsv4974 5 118778158 118823275 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8142 S 9 0 1 "" NA12156 nsv830461 5 119023361 119181190 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445003,nssv1445004 M 95 1 1 "" dgv352n21 5 119036314 119045199 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv528304,nsv521588 M 2026 0 2 "" nsv520525 5 119039424 119045199 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv686507,nssv672088 M 2026 0 2 "" nsv328209 5 119043057 119043376 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346787 M 24 "" nsv4975 5 119055910 119089805 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2705 S 9 1 0 "" NA18555 nsv328932 5 119106093 119106093 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347510 M 24 "" nsv830462 5 119152888 119290788 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445006,nssv1445005 M 95 0 2 "" nsv526990 5 119356477 119360569 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703363 S 2026 0 1 "" nsv521547 5 119462092 119465484 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698162 S 2026 0 1 "" nsv527509 5 119725615 119751968 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703962 S 2026 0 1 "" nsv830463 5 119834542 119996724 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445008,nssv1445009 M 95 0 2 "" nsv462427 5 119866822 119956573 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538594 S 1557 0 1 "" 1782681114_A nsv517556 5 119952431 119953591 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv682869,nssv667731,nssv673518,nssv675569,nssv685342,nssv678539,nssv652351 M 2026 0 7 "" dgv83n68 5 119977989 120179752 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH nsv830464,nsv830465 M 95 4 0 "" nsv527308 5 119994484 120019023 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703728 S 2026 0 1 "" nsv521074 5 120083640 120094719 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv692070,nssv681289 M 2026 2 0 "" nsv818381 5 120083640 120094719 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416241 S 112 1 0 "" NA12057 nsv830466 5 120114327 120286915 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445014,nssv1445022,nssv1445017,nssv1445015,nssv1445016,nssv1445020,nssv1445021,nssv1445019 M 95 8 0 "" nsv330017 5 120117835 120117835 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv348595 M 24 "" nsv524748 5 120132747 120247239 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700739 S 2026 0 1 "" nsv508377 5 120279128 120333160 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618777 S 4 0 1 "" NA10860 nsv526730 5 120298404 120328975 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703071 S 2026 0 1 "" nsv527585 5 120298404 120570314 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704046 S 2026 0 1 "" esv2422297 5 120302094 120358372 CNV Deletion Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161286 S 181 0 1 "" ND04275 nsv517000 5 120324686 120480755 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv661915,nssv678795,nssv651915,nssv671179,nssv683497,nssv663010,nssv663586,nssv653928,nssv651954,nssv654264,nssv663404,nssv674259,nssv672936,nssv666290,nssv674808,nssv657084,nssv693702,nssv661306,nssv665024,nssv667828,nssv653583,nssv655870 M 2026 12 10 "" nsv328260 5 120340933 120341247 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346838 M 24 "" nsv328081 5 120358347 120358614 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346659 M 24 "" nsv830467 5 120372561 120535767 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445023 S 95 0 1 "" esv33642 5 120408424 120876659 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv95229 S 51 1 0 "" 21721 nsv462429 5 120416885 120480755 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538596 S 1557 0 1 "" 1780854061_A nsv830468 5 120492596 120676966 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445024,nssv1445025 M 95 0 2 "" nsv516363 5 120539019 120579608 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv692433,nssv655289,nssv667777 M 2026 0 3 "" nsv462430 5 120556453 120617672 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538597 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00568 nsv518883 5 120619324 120736647 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696342 S 2026 0 1 "" nsv4976 5 120686051 120718084 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2540 S 9 1 0 "" NA18555 nsv519599 5 120714197 120731816 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694949,nssv657008,nssv693839,nssv661545,nssv672953 M 2026 0 5 "" nsv471789 5 120755307 120755475 CNV Loss Hinds et al 2006 16327809 Oligo_aCGH,PCR Custom Perlegen arrays nssv646070 M 2.483 95 "" nsv520719 5 120793117 120804274 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697573 S 2026 1 0 "" nsv462431 5 120945148 121093738 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538598 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01365 nsv462433 5 120964132 121060274 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538599 S 1557 1 0 "" 1780846321_A dgv353n21 5 120974940 121060274 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv524246,nsv526906 M 2026 2 0 "" esv2752059 5 121016637 121128745 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6984692,essv6984693,essv6984694,essv6987651 M 771 1 0 "" SPC_166 nsv521061 5 121034917 121060274 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv691269,nssv685074,nssv681010 M 2026 0 3 "" nsv830469 5 121061464 121226480 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445026 S 95 1 0 "" nsv462434 5 121119845 121158036 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538600 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00580 nsv509992 5 121159628 121165628 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621269 S 4 0 1 "" NA15510 dgv723n27 5 121282047 121289560 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv462436,nsv462435 M 1557 0 2 "" HGDP00232,HGDP00649 nsv516419 5 121282047 121289560 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv681228,nssv658437,nssv693840,nssv686429,nssv668254,nssv654890 M 2026 0 6 "" nsv433233 5 121358537 121386088 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463114 S 9 0 1 "" NA15510 nsv525806 5 121448325 121449763 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701990 S 2026 0 1 "" nsv471790 5 121470277 121470747 CNV Loss Hinds et al 2006 16327809 Oligo_aCGH,PCR Custom Perlegen arrays nssv646071 M 0.230 95 "" nsv4978 5 121600957 121634618 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv491 S 9 0 1 "" NA19240 nsv830471 5 122160018 122351898 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445028,nssv1445027 M 95 2 0 "" dgv213n6 5 122302240 122302576 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv327994,nsv329842 M 24 "" nsv520349 5 122387539 122483920 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697362 S 2026 0 1 "" nsv4979 5 122473573 122508046 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv492 S 9 1 0 "" NA19240 nsv330041 5 122587049 122587049 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv348619 M 24 "" nsv328482 5 122587050 122587050 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347060 M 24 "" nsv830472 5 122604462 122780319 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445034,nssv1445033,nssv1445031,nssv1445032,nssv1445030,nssv1445037,nssv1445043,nssv1445036,nssv1445035,nssv1445038,nssv1445039,nssv1445042,nssv1445041 M 95 13 0 "" nsv507288 5 122609385 122615385 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621814 S 4 1 0 "" NA10860 esv34878 5 122611000 122658252 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6979613,essv6986906 M 771 1 0 "" NA18579 dgv1847e1 5 122626041 122685098 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv5640,esv1383 M 271 0 0 "" NA18579 nsv10747 5 122648933 122652793 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14799,nssv14136,nssv15567,nssv14648,nssv15531,nssv15313,nssv13466,nssv14193,nssv13687,nssv13532,nssv14611,nssv13704,nssv12641,nssv12910 M 31 10 4 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10863,NA11830,NA12155,NA12740,NA12802,NA12872,NA18504,NA18860,NA18975,NA19007,NA19132,NA19240 nsv4980 5 122735445 122769697 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8143 S 9 1 0 "" NA12156 nsv327517 5 122751607 122751662 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346095 M 24 "" nsv527734 5 122936260 122949002 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704218 S 2026 0 1 "" nsv507289 5 122979821 122985821 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622952,nssv620320,nssv617689,nssv621815 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv277 5 123020657 123044567 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv277 S 1 1 0 "" NA15510 nsv4981 5 123020657 123044567 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv11110 S 9 1 0 "" NA15510 nsv462437 5 123142086 123159778 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538603 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00691 nsv523040 5 123164276 123168046 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698723 S 2026 0 1 "" nsv523232 5 123187997 123220844 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698955 S 2026 0 1 "" nsv4982 5 123429181 123460172 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10472 S 9 1 0 "" NA18956 nsv327924 5 123488962 123490997 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346502 M 24 "" nsv520132 5 123569140 123574003 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv684372,nssv672190,nssv685356,nssv661079,nssv685307,nssv661500 M 2026 0 6 "" dgv354n21 5 123631573 123633739 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv519250,nsv528234 M 2026 0 2 "" nsv520370 5 123745586 123747347 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697377 S 2026 0 1 "" nsv462440 5 123897759 123947830 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538605 S 1557 0 1 "" 1782681195_A nsv520775 5 123898170 123902748 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv688894,nssv675284 M 2026 0 2 "" nsv327412 5 123924841 123930381 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv345990 M 24 "" nsv519664 5 123989156 123999877 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv687793,nssv657460 M 2026 2 0 "" nsv830473 5 124034320 124239937 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445044 S 95 1 0 "" nsv328005 5 124132981 124133032 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346583 M 24 "" nsv507290 5 124276901 124282901 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621816,nssv617690 M 4 2 0 "" CHM,NA10860 nsv830474 5 124291527 124459198 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445045 S 95 0 1 "" nsv328281 5 124391749 124392074 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346859 M 24 "" nsv4983 5 124404266 124436575 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6018 S 9 1 0 "" NA12156 nsv4984 5 124404927 124429399 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8144 S 9 0 1 "" NA12156 nsv830475 5 124415191 124578155 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445046 S 95 1 0 "" nsv507291 5 124456958 124462958 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621817 S 4 1 0 "" NA10860 nsv328016 5 124512291 124512342 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346594 M 24 "" nsv511114 5 124767618 124810178 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624298 S 4 0 0 "" NA18994 nsv4985 5 124786930 124811387 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9675,nssv493 M 9 2 0 "" NA18507,NA19240 nsv4986 5 124927652 124972815 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8145 S 9 0 1 "" NA12156 nsv515845 5 124992431 124997655 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv675950,nssv664994,nssv692560 M 2026 0 3 "" nsv521940 5 125077069 125120399 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694112 S 2026 0 1 "" dgv1848e1 5 125078762 125315808 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv499,essv2831 M 271 0 0 "" NA18953 nsv521316 5 125139262 125162262 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697922 S 2026 0 1 "" nsv520520 5 125172152 125190345 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697466 S 2026 0 1 "" nsv818382 5 125187158 125201023 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417441 S 112 0 1 "" NA18953 nsv830476 5 125231602 125413536 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445047 S 95 1 0 "" nsv518268 5 125293018 125307428 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695699 S 2026 0 1 "" nsv10748 5 125335472 125556223 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14056 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18552 nsv528582 5 125368515 125381981 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705203 S 2026 0 1 "" nsv527994 5 125410348 125483891 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704519 S 2026 0 1 "" nsv515933 5 125433128 125439856 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv665368,nssv668599 M 2026 0 2 "" nsv516892 5 125545005 125546015 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv680071,nssv654734 M 2026 0 2 "" nsv830477 5 125623155 125824583 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445048 S 95 1 0 "" nsv4987 5 125828360 125832397 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2706 S 9 1 0 "" NA18555 nsv4989 5 125842236 125886927 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2541 S 9 0 1 "" NA18555 nsv329471 5 125869017 125869226 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv348049 M 24 "" nsv462442 5 125949667 126117089 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538606 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01194 nsv523919 5 126039032 126057234 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699762 S 2026 0 1 "" nsv509084 5 126062083 126156851 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620832 S 4 1 0 "" NA15510 dgv214n6 5 126486277 126486715 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv327162,nsv327198 M 24 "" nsv521086 5 126547250 126553249 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694416 S 2026 0 1 "" nsv830478 5 126749267 126965307 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445049 S 95 0 1 "" nsv526333 5 126760326 126774176 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702623 S 2026 0 1 "" nsv830479 5 126877153 127081020 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445050 S 95 1 0 "" nsv4990 5 126927418 126948241 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8146 S 9 0 1 "" NA12156 nsv519906 5 126971192 126983817 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697117 S 2026 0 1 "" nsv329985 5 126978374 126978459 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv348563 M 24 "" nsv830480 5 126992650 127152421 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445052 S 95 0 1 "" nsv4991 5 127161803 127195655 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2707 S 9 1 0 "" NA18555 nsv4992 5 127179598 127224248 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4860 S 9 0 1 "" NA19129 dgv215n6 5 127363900 127364830 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv328072,nsv327910,nsv329177 M 24 "" nsv508378 5 127402803 127432929 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622532 S 4 0 1 "" NA18994 nsv4993 5 127433113 127473521 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10473 S 9 0 1 "" NA18956 nsv328805 5 127435343 127438819 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347383 M 24 "" nsv830482 5 127503297 127693276 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445053 S 95 1 0 "" nsv830483 5 127623469 127733023 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445054 S 95 1 0 "" nsv4994 5 127820571 127853788 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8147 S 9 1 0 "" NA12156 nsv328434 5 127903429 127903569 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347012 M 24 "" nsv830484 5 127964246 128115207 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445055 S 95 1 0 "" nsv4995 5 128075080 128119920 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8148 S 9 0 1 "" NA12156 nsv830485 5 128326521 128508391 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445056 S 95 1 0 "" nsv329438 5 128342754 128342754 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv348016 M 24 "" nsv328601 5 128342769 128342769 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347179 M 24 "" nsv327282 5 128355691 128355776 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv345860 M 24 "" nsv329829 5 128355779 128355864 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv348407 M 24 "" nsv4996 5 128388330 128423179 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv494 S 9 1 0 "" NA19240 nsv471791 5 128485610 128485749 CNV Loss Hinds et al 2006 16327809 Oligo_aCGH,PCR Custom Perlegen arrays nssv646072 M 0.021 95 "" nsv4997 5 128603180 128634204 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv11111 S 9 1 0 "" NA15510 dgv1849e1 5 128623637 128862751 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv23259,essv24827,esv578 M 271 0 0 "" NA07000,NA07029 nsv516424 5 128655693 128655744 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv691125,nssv668282,nssv672247,nssv671815,nssv663308 M 2026 0 5 "" dgv1850e1 5 128671528 128790773 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv18870,essv21957 M 271 0 0 "" NA07000,NA07029 dgv206e55 5 128686330 128790773 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv34881,esv35072 M 771 0 2 "" NA07000,NA07029 nsv10749 5 128692544 128775197 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13562 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA07029 nsv818383 5 128708913 128774826 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417023,nssv1417024 M 112 0 2 "" NA07000,NA07029 esv2752060 5 128746000 128868000 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6987194,essv6985256,essv6985255 M 771 1 0 "" SPC_13 nsv830486 5 128762927 128955762 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445057 S 95 1 0 "" nsv328240 5 128771480 128771541 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346818 M 24 "" nsv4998 5 128777676 128812901 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv495 S 9 1 0 "" NA19240 nsv830487 5 128861056 129039905 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445066,nssv1445064,nssv1445068,nssv1445069,nssv1445067,nssv1445065,nssv1445061,nssv1445063,nssv1445060,nssv1445059,nssv1445058 M 95 0 11 "" nsv5000 5 128982788 129015174 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3385 S 9 1 0 "" NA12878 nsv830488 5 129206611 129378332 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445070 S 95 1 0 "" nsv462445 5 129384751 129444826 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538607 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00070 nsv327235 5 129411450 129411728 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv345813 M 24 "" nsv5001 5 129568968 129614942 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6019 S 9 0 1 "" NA12156 nsv507292 5 129645901 129651901 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617691,nssv622953 M 4 2 0 "" CHM,NA18994 dgv1851e1 5 130098933 130316104 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv20390,esv18 M 271 0 0 "" NA10830 nsv462447 5 130124159 130270328 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538608 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00676 nsv462448 5 130131975 130175441 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538609 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00145 nsv526798 5 130137619 130358366 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703152 S 2026 0 1 "" nsv520226 5 130435726 130441880 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697292 S 2026 0 1 "" dgv1852e1 5 130466896 130619811 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv3293,essv19463,essv8871,essv13160,essv8422,essv4674,essv11896,essv7562,essv25,essv3356,essv9403,essv1289,essv1737,essv853,essv22925,essv15595,essv2500,essv10493,essv16906,essv12406,essv15238,essv17082,essv22947,essv10014,essv7186,essv12202,essv10112,essv14711,essv11084,essv13588,essv15027,essv21789,essv21673,essv6366,essv363,essv20629,essv16456,essv3564,essv11041,essv4170,essv15796,essv16991,essv22293,essv23482,essv20806,essv9039,essv9945,essv17965,essv14143,essv14298,essv14879,essv20152,essv22673,essv14572,essv3484,esv176,essv17814,essv20886,essv9379,essv24380,essv14448,essv4233,essv13427,essv17334,essv15385,essv11587,essv21201,essv11416,essv8360,essv13806,essv14646,essv23959,essv8601,essv24962,essv14057,essv21079,essv15363,essv9764,essv18642,essv10842,essv17181,essv16755,essv14407,essv15623,essv23834,essv10929,essv12505,essv5495,essv18752,essv10550,essv20013,essv1012,essv6611,essv12694,essv18984,essv16096,essv13546,essv11908,essv16250,essv17245,essv11755,essv10240,essv10311 M 271 0 0 "" NA06985,NA06991,NA07022,NA07034,NA07048,NA07056,NA07357,NA10831,NA10839,NA11830,NA11832,NA11840,NA12003,NA12005,NA12146,NA12234,NA12239,NA12248,NA12707,NA12752,NA12760,NA12801,NA12814,NA12874,NA18500,NA18502,NA18503,NA18504,NA18506,NA18507,NA18508,NA18515,NA18516,NA18522,NA18545,NA18547,NA18555,NA18603,NA18609,NA18621,NA18622,NA18632,NA18853,NA18856,NA18857,NA18858,NA18861,NA18862,NA18863,NA18871,NA18872,NA18912,NA18945,NA18965,NA18971,NA18972,NA18991,NA18992,NA18995,NA18997,NA19000,NA19003,NA19005,NA19093,NA19094,NA19099,NA19100,NA19101,NA19102,NA19127,NA19129,NA19130,NA19131,NA19132,NA19137,NA19139,NA19140,NA19143,NA19144,NA19145,NA19152,NA19153,NA19159,NA19160,NA19161,NA19171,NA19172,NA19173,NA19192,NA19194,NA19201,NA19202,NA19203,NA19205,NA19207,NA19208,NA19209,NA19211,NA19221,NA19238,NA19239,NA19240 nsv524005 5 130626217 130688294 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699865 S 2026 0 1 "" nsv528481 5 130688294 130694020 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705084 S 2026 0 1 "" nsv509993 5 130951723 130957723 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621270 S 4 0 1 "" NA15510 nsv507293 5 131302737 131308737 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621818 S 4 1 0 "" NA10860 nsv507294 5 131536041 131542041 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621819 S 4 1 0 "" NA10860 nsv462452 5 131771676 131832406 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538611 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01187 nsv5002 5 131783167 131815046 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6020 S 9 1 0 "" NA12156 nsv528281 5 132014362 132045843 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704851 S 2026 1 0 "" nsv529021 5 132046068 132113876 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705732 S 2026 0 1 "" nsv521072 5 132067031 132093779 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv682210,nssv689546,nssv681265 M 2026 0 3 "" nsv528687 5 132113876 132142746 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705330 S 2026 1 0 "" nsv830489 5 132179436 132364335 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445071 S 95 0 1 "" nsv5003 5 132208755 132253510 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2543 S 9 0 1 "" NA18555 nsv5004 5 132226001 132232719 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv496 S 9 1 0 "" NA19240 nsv830490 5 132316849 132478768 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445072 S 95 1 0 "" nsv462453 5 132492448 132516566 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538612 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01359 nsv519514 5 132607558 132608889 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696894 S 2026 0 1 "" nsv327378 5 132685809 132685860 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv345956 M 24 "" nsv327511 5 132685868 132685917 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346089 M 24 "" nsv329127 5 132738893 132738893 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347705 M 24 "" nsv520869 5 132775664 132779965 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697330,nssv676643,nssv695557,nssv678992 M 2026 1 3 "" nsv5005 5 132806977 132848932 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8150 S 9 0 1 "" NA12156 nsv507295 5 132830476 132836476 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620321 S 4 1 0 "" NA15510 nsv5006 5 132914820 132958029 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6021 S 9 0 1 "" NA12156 nsv5007 5 132929516 132963606 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8151 S 9 1 0 "" NA12156 nsv511115 5 132936988 132956011 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618674 S 4 0 0 "" CHM nsv508379 5 132945295 132956011 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619962,nssv618778 M 4 0 2 "" NA10860,NA15510 nsv521520 5 133003373 133004868 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698137 S 2026 0 1 "" nsv518138 5 133019176 133028407 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695558 S 2026 0 1 "" nsv5008 5 133084475 133129310 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8152 S 9 0 1 "" NA12156 nsv509085 5 133145805 133237380 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619421 S 4 1 0 "" NA10860 nsv327977 5 133162588 133162588 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346555 M 24 "" nsv507296 5 133196554 133202554 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617692,nssv620322,nssv622954 M 4 3 0 "" CHM,NA15510,NA18994 nsv818384 5 133261728 133274514 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417187 S 112 0 1 "" NA18558 nsv5009 5 133360484 133393475 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6022 S 9 1 0 "" NA12156 nsv509086 5 133412858 133459351 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619422 S 4 1 0 "" NA10860 nsv5011 5 133446751 133480567 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv497 S 9 1 0 "" NA19240 nsv509087 5 133794644 133963276 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620833,nssv619423 M 4 2 0 "" NA10860,NA15510 nsv521720 5 133869574 133936260 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694480 S 2026 0 1 "" nsv520381 5 133887508 134006828 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv679505,nssv663447,nssv697961,nssv673349 M 2026 1 3 "" nsv462457 5 133900603 133933728 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538613 S 1557 0 1 "" 1780862448_A nsv830491 5 133920842 134088389 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445075 S 95 0 1 "" nsv5012 5 134009962 134055025 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8153 S 9 0 1 "" NA12156 nsv830493 5 134031366 134289810 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445076 S 95 0 1 "" nsv509088 5 134090924 134090924 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618044 S 4 1 0 "" CHM nsv523937 5 134160168 134218124 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699783 S 2026 1 0 "" nsv830494 5 134188786 134347887 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445077,nssv1445079,nssv1445078,nssv1445081,nssv1445080 M 95 2 3 "" nsv5013 5 134339818 134371970 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3386 S 9 1 0 "" NA12878 nsv519879 5 134370619 134375855 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv683289,nssv659286,nssv698623 M 2026 0 3 "" nsv462458 5 134375855 134433881 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538614 S 1557 0 1 "" NINDS_60 nsv830495 5 134388184 134567796 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445082 S 95 0 1 "" nsv5014 5 134459774 134493329 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4862 S 9 1 0 "" NA19129 nsv830496 5 134568930 134703986 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445083 S 95 1 0 "" nsv329851 5 134636977 134636977 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv348429 M 24 "" nsv327970 5 134637069 134637069 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346548 M 24 "" nsv519790 5 134642914 134659913 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv681341,nssv658661 M 2026 2 0 "" nsv518218 5 134643757 134666606 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695643 S 2026 0 1 "" nsv5015 5 134653292 134712890 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3387,nssv10474,nssv2708 M 9 3 0 "" NA12878,NA18555,NA18956 nsv5016 5 134835106 134880199 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8154 S 9 0 1 "" NA12156 nsv508380 5 135125762 135208362 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618779 S 4 0 1 "" NA10860 dgv1853e1 5 135193500 135502898 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv7179,esv572 M 271 0 0 "" NA18547 nsv441964 5 135329914 135362750 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv1854e1 5 135329916 135380394 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv7635,essv4112 M 271 0 0 "" NA18529,NA18547 nsv818385 5 135336658 135360470 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417086,nssv1417159 M 112 0 2 "" NA18529,NA18547 esv34736 5 135339000 135360470 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6989086,essv6979341,essv6988157 M 771 0 1 "" NA18529 nsv5017 5 135431026 135462385 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10475 S 9 1 0 "" NA18956 nsv508381 5 135517122 135592057 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622533 S 4 0 1 "" NA18994 nsv5018 5 135876923 135899459 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8155 S 9 0 1 "" NA12156 nsv517402 5 136031051 136042404 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv671094,nssv662775,nssv685737,nssv664857,nssv668737,nssv684282,nssv660458,nssv656044,nssv665179,nssv662154,nssv669811,nssv656368,nssv682302,nssv651916,nssv664206,nssv692760,nssv661546,nssv679477,nssv677328,nssv685780,nssv679506 M 2026 0 21 "" nsv522822 5 136031051 136047556 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698471 S 2026 0 1 "" nsv507297 5 136064778 136070778 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621820 S 4 1 0 "" NA10860 nsv5019 5 136241910 136274011 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2544 S 9 1 0 "" NA18555 nsv830497 5 136500558 136678666 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445084 S 95 0 1 "" nsv462459 5 136510446 136554650 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538615 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00859 nsv328026 5 136594487 136594487 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346604 M 24 "" nsv830498 5 136727149 136891039 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445087,nssv1445086 M 95 2 0 "" nsv5020 5 136851940 136892357 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2545,nssv6023 M 9 0 2 "" NA12156,NA18555 nsv830499 5 136888395 137048825 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445088 S 95 0 1 "" nsv830500 5 137035654 137208902 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445089 S 95 0 1 "" nsv509089 5 137042248 137074512 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620834 S 4 1 0 "" NA15510 nsv5022 5 137046144 137052788 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6024 S 9 0 1 "" NA12156 nsv328717 5 137050478 137051801 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347295 M 24 "" nsv830501 5 137152365 137340623 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445090 S 95 1 0 "" nsv5023 5 137176547 137200879 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8157 S 9 0 1 "" NA12156 nsv830502 5 137272627 137470176 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445091 S 95 1 0 "" nsv5024 5 137803019 137833294 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10476 S 9 1 0 "" NA18956 nsv528851 5 137810103 137833551 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705530 S 2026 0 1 "" nsv5025 5 137817246 137846651 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3388 S 9 0 1 "" NA12878 dgv1855e1 5 137833483 137865270 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1245,essv20481 M 271 0 0 "" NA12249 nsv10751 5 137833594 137848915 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15597,nssv13496,nssv14641,nssv15734,nssv13734,nssv13665,nssv16133,nssv15561,nssv13282,nssv16140,nssv12940,nssv13585,nssv14166,nssv14223,nssv13717,nssv13715,nssv14982,nssv14829,nssv12671,nssv13592,nssv13918,nssv13397,nssv14678,nssv15373,nssv13700,nssv13908,nssv14116,nssv12529,nssv14164,nssv15343,nssv14219 M 31 30 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10847,NA10863,NA11830,NA12155,NA12740,NA12802,NA12872,NA18502,NA18504,NA18517,NA18537,NA18552,NA18563,NA18564,NA18572,NA18853,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19144,NA19173,NA19221,NA19240 nsv441965 5 137836323 137843610 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv329728 5 137873977 137875785 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv348306 M 24 "" nsv529022 5 138004751 138019751 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705733 S 2026 1 0 "" nsv527078 5 138007057 138015338 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703457 S 2026 0 1 "" nsv5026 5 138075332 138108104 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv498 S 9 1 0 "" NA19240 nsv5027 5 138469677 138502391 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2546 S 9 1 0 "" NA18555 nsv482090 5 138751157 138753504 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558451 S 1 1 0 "" KB1 nsv519808 5 138760478 139165693 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697062 S 2026 0 1 "" nsv328925 5 138762463 138762754 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347503 M 24 "" nsv516200 5 138831089 138841262 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv666767,nssv661522 M 2026 0 2 "" nsv830504 5 138871674 139060889 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445092 S 95 1 0 "" nsv5028 5 138889261 138923166 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8158 S 9 1 0 "" NA12156 nsv830505 5 138911366 139105069 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445094,nssv1445093 M 95 0 2 "" nsv462460 5 138913335 139125233 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538616 S 1557 0 1 "" NINDS_271 nsv818386 5 139068261 139125268 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417696 S 112 1 0 "" NA18999 nsv830506 5 139197509 139380085 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445095 S 95 0 1 "" nsv526406 5 139303441 139309250 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702706 S 2026 1 0 "" nsv830507 5 139516108 139694346 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445097 S 95 0 1 "" nsv509090 5 139671075 139780793 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623455 S 4 1 0 "" NA18994 nsv330052 5 139818717 139818766 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv348630 M 24 "" nsv462462 5 139916423 139985970 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538618 S 1557 0 1 "" 1780854215_A nsv518560 5 139985294 139986614 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696003 S 2026 0 1 "" nsv523239 5 139986614 139988603 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698966 S 2026 0 1 "" nsv471435 5 140030566 140033355 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548273,nssv548271,nssv548272 M 3 "" nsv830508 5 140035157 140228842 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445098 S 95 0 1 "" nsv327820 5 140068985 140077161 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346398 M 24 "" dgv1856e1 5 140137124 140307304 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv8818,essv291,essv8465,essv21730,essv3025,essv2815,essv22532,essv17527,essv18920,essv7527,essv12205,essv18650,essv6188,essv24121,essv18135,essv14483,essv9740,essv4238,essv19455,essv23342,essv11702,essv12794,essv17823,essv11264,essv16529,essv19266,essv19928,essv12964,essv23896,essv20097,essv17182,essv21024,essv8616,essv14735,essv16069,essv3741,essv23429,essv15144 M 271 0 0 "" NA06991,NA07048,NA07348,NA10831,NA10838,NA10847,NA10854,NA11840,NA11993,NA12005,NA12234,NA12248,NA12750,NA12762,NA12813,NA12814,NA18501,NA18508,NA18516,NA18532,NA18545,NA18603,NA18859,NA18913,NA18961,NA18978,NA18981,NA18987,NA19101,NA19120,NA19129,NA19154,NA19159,NA19171,NA19202,NA19204,NA19210,NA19239 dgv1857e1 5 140137124 140808866 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv24255,essv22446,esv17,essv18319,essv24914 M 271 0 0 "" NA06994,NA10846,NA10856,NA12761 nsv330045 5 140161185 140167174 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv348623 M 24 "" nsv10752 5 140193978 140201328 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12701,nssv13938,nssv16170,nssv13526,nssv16163 M 31 3 2 Samples from several populations that are part of the HapMap project. "" NA12872,NA18564,NA18972,NA19007,NA19221 esv33939 5 140197260 140219007 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98150,essv101331,essv96996,essv96204,essv99620,essv92590,essv98104,essv100240,essv100502,essv100322,essv96263 M 51 1 10 "" 21772,21805,21817,22007,22217,22233,22259,22286,22298,22300,22371 nsv10753 5 140202344 140219348 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14196,nssv13998,nssv15794,nssv14708,nssv13730,nssv13312,nssv15627,nssv14798,nssv12970,nssv13775,nssv13978,nssv15591,nssv14279,nssv15403,nssv13794,nssv13695,nssv13968,nssv13622,nssv13777,nssv14253,nssv16193,nssv13615,nssv13457,nssv14859,nssv14176,nssv12731,nssv14146,nssv13948,nssv14194,nssv12559,nssv14701,nssv14249,nssv13487,nssv15012,nssv16230,nssv14224,nssv14671,nssv16200,nssv13556 M 31 30 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10847,NA10863,NA11830,NA12155,NA12740,NA12802,NA12872,NA18502,NA18504,NA18517,NA18537,NA18552,NA18563,NA18564,NA18572,NA18853,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19144,NA19173,NA19221,NA19240 nsv442962 5 140204020 140223940 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv724n27 5 140207402 140212530 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv462465,nsv462464,nsv462466,nsv462468,nsv462467,nsv462463 M 1557 0 6 "" HGDP00140,HGDP00226,HGDP00433,HGDP00618,HGDP01067,HGDP01323 nsv437955 5 140208156 140210355 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv468709,nssv468708 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA18637,NA18990 nsv515909 5 140208183 140212530 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv655339,nssv688847,nssv693611,nssv657427,nssv665249,nssv654853,nssv693553,nssv677364,nssv672714,nssv676596,nssv687794 M 2026 0 11 "" nsv10754 5 140242543 140254768 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16223 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18972 nsv818387 5 140400175 140416247 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417025 S 112 1 0 "" NA07000 nsv516514 5 140457078 140460539 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695917,nssv676162,nssv668777 M 2026 3 0 "" nsv522785 5 140463055 140510713 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698429 S 2026 0 1 "" nsv471634 5 140466162 140618127 CNV Gain+Loss Sharp et al 2005 15918152 BAC_aCGH,FISH Eichler Segmental Duplication BAC array nssv551161,nssv551167,nssv551163,nssv551166,nssv551164,nssv551159,nssv551165,nssv551158,nssv551160,nssv551162 M 48 7 3 "" NA10469,NA10470,NA10471,NA11323,NA11521,NA11523,NA15724,NA15728,NA15733,NA17016 dgv1858e1 5 140488471 140678806 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2967,essv19555,essv20294,essv21045,essv20081,essv4731 M 271 0 0 "" NA06991,NA07048,NA12144,NA12864,NA18620,NA18981 nsv5029 5 140509445 140520182 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4863 S 9 1 0 "" NA19129 nsv10755 5 140511547 140517414 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14731 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19240 nsv509092 5 140515687 140551988 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623456,nssv618045,nssv620835,nssv619425 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv278 5 140527498 140534839 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv278 S 1 1 0 "" NA15510 nsv5030 5 140527498 140535436 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv11112,nssv2547 M 9 2 0 "" NA15510,NA18555 nsv471436 5 140532427 140536140 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548275,nssv548276,nssv548274 M 3 "" nsv10756 5 140534700 140541809 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15657,nssv14028,nssv13000,nssv13824,nssv14226,nssv14283,nssv13805,nssv12791,nssv13645,nssv13586,nssv13517,nssv13725,nssv13807,nssv14254,nssv15824,nssv14828,nssv13342 M 31 17 0 Samples from several populations that are part of the HapMap project. "" NA07048,NA10839,NA10847,NA10863,NA11830,NA12155,NA12802,NA12872,NA18517,NA18537,NA18563,NA18564,NA18942,NA18975,NA18980,NA19007,NA19132 esv33618 5 140535970 140538710 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93883,essv95176,essv94741,essv101362,essv95248,essv101665,essv92864,essv96085,essv94912,essv97672,essv100123,essv100539,essv100429,essv96291 M 51 1 13 "" 21634,21721,21791,21805,21872,21909,21939,22007,22231,22278,22286,22298,22300,22371 nsv5031 5 140537478 140562464 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2548,nssv6026 M 9 2 0 "" NA12156,NA18555 nsv471439 5 140537614 140540203 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548277,nssv548279,nssv548280 M 3 "" nsv10757 5 140573036 140574775 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14313 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA07048 nsv519627 5 140752611 140787440 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696959 S 2026 0 1 "" nsv518799 5 140770117 140776283 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694275 S 2026 0 1 "" nsv327707 5 140770623 140775491 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346285 M 24 "" nsv462470 5 140841985 140872827 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538625 S 1557 0 1 "" 1780862419_A nsv516495 5 140935961 140984515 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv680723,nssv695194,nssv654714,nssv668684 M 2026 3 1 "" nsv5033 5 140958882 140990738 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8159 S 9 1 0 "" NA12156 nsv5034 5 141003524 141036341 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6027 S 9 1 0 "" NA12156 nsv5035 5 141082103 141103513 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3389 S 9 1 0 "" NA12878 nsv509093 5 141166537 141244396 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623457,nssv619426 M 4 2 0 "" NA10860,NA18994 nsv526702 5 141315105 141319947 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703041 S 2026 0 1 "" nsv511116 5 141337146 141466891 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622372,nssv624300 M 4 0 0 "" NA10860,NA18994 nsv5036 5 141338057 141367849 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2710 S 9 1 0 "" NA18555 nsv517105 5 141419542 141419625 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv688777,nssv685495,nssv681315,nssv654332,nssv656551,nssv653795,nssv667532 M 2026 0 7 "" nsv522282 5 141447110 141448438 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695065 S 2026 0 1 "" nsv509994 5 141484410 141490410 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622100 S 4 0 1 "" NA10860 nsv830509 5 141512181 141719834 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445099 S 95 1 0 "" nsv5037 5 141584001 141616340 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6028 S 9 1 0 "" NA12156 dgv216n6 5 141711598 141711950 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv329631,nsv328791 M 24 "" nsv5038 5 141800260 141833896 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3391 S 9 1 0 "" NA12878 nsv5039 5 141849416 141882836 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv500 S 9 1 0 "" NA19240 nsv830510 5 141983446 142163802 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445100 S 95 1 0 "" nsv525272 5 141990564 142000692 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701373 S 2026 0 1 "" nsv517346 5 141998044 142000692 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv692718,nssv660798,nssv656413,nssv678082,nssv651789,nssv653194,nssv661080,nssv677158,nssv657085,nssv680096,nssv699017,nssv687270,nssv687875,nssv661916,nssv651955,nssv685308,nssv667219 M 2026 0 17 "" nsv441966 5 141998202 142000197 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv830511 5 142315631 142476887 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445101 S 95 1 0 "" nsv522807 5 142397851 142510153 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698452 S 2026 0 1 "" nsv507298 5 142436925 142442925 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621821,nssv620323 M 4 2 0 "" NA10860,NA15510 nsv5040 5 142532431 142564848 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3392 S 9 1 0 "" NA12878 esv33748 5 142618460 142679788 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv95847,essv99820 M 51 0 2 "" 21911,22086 nsv509995 5 142623096 142629096 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622101,nssv623986,nssv621272,nssv618217 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv5041 5 142633382 142678089 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8160 S 9 0 1 "" NA12156 nsv328009 5 142644710 142644774 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346587 M 24 "" nsv328818 5 142644710 142644839 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347396 M 24 "" nsv327674 5 142644841 142644905 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346252 M 24 "" nsv327858 5 142715262 142719683 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346436 M 24 "" nsv329304 5 142915574 142915885 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347882 M 24 "" nsv830512 5 142916989 143135031 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445103,nssv1445102 M 95 2 0 "" nsv328594 5 143006026 143006026 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347172 M 24 "" nsv5042 5 143057061 143087457 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8161 S 9 0 1 "" NA12156 nsv521378 5 143062811 143077331 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697988 S 2026 0 1 "" nsv329231 5 143116308 143116308 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347809 M 24 "" nsv328790 5 143116358 143116358 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347368 M 24 "" nsv441967 5 143386880 143390529 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv329427 5 143387340 143387340 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv348005 M 24 "" nsv5044 5 143458295 143463541 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4864 S 9 1 0 "" NA19129 nsv327283 5 143493071 143495240 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv345861 M 24 "" nsv329721 5 143495247 143495247 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv348299 M 24 "" nsv5045 5 143552523 143558412 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9677 S 9 1 0 "" NA18507 nsv830513 5 143658744 143827742 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445105,nssv1445104 M 95 2 0 "" nsv5046 5 143816139 143847556 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4865 S 9 1 0 "" NA19129 nsv462471 5 144002234 144018104 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538626 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01283 nsv523852 5 144032240 144033529 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699687 S 2026 0 1 "" dgv1859e1 5 144153983 144340436 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv4856,esv50 M 271 0 0 "" NA18540 nsv509996 5 144200058 144206058 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621273 S 4 0 1 "" NA15510 nsv5047 5 144249147 144294495 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6029 S 9 0 1 "" NA12156 nsv515631 5 144463419 144475936 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv664168,nssv679784 M 2026 0 2 "" dgv1860e1 5 144466435 144475035 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv14943,esv927 M 271 0 0 "" NA19132 essv13210 5 144471430 144475035 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19120 nsv528010 5 144491404 144492319 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704537 S 2026 0 1 "" nsv462473 5 144566716 144635240 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538628 S 1557 0 1 "" 1780862380_A nsv527012 5 144661751 144682989 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703387 S 2026 1 0 "" nsv507299 5 144805808 144811808 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617693,nssv620325 M 4 2 0 "" CHM,NA15510 nsv5048 5 144818835 144843365 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8163 S 9 0 1 "" NA12156 nsv5049 5 144880899 144915157 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3393 S 9 1 0 "" NA12878 nsv462474 5 145048194 145123968 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538629 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01010 nsv523502 5 145568676 145620180 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699271 S 2026 1 0 "" dgv725n27 5 145584828 145602665 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv462477,nsv462476 M 1557 0 2 "" 1780854253_A,HGDP01331 nsv517251 5 145602665 145610930 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv654123,nssv662824,nssv690575 M 2026 0 3 "" nsv462478 5 145602665 145667488 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538632 S 1557 0 1 "" 1780862304_A nsv5050 5 145703116 145717663 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv501 S 9 1 0 "" NA19240 nsv329179 5 145727966 145727966 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347757 M 24 "" nsv5051 5 145770577 145804757 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv502 S 9 1 0 "" NA19240 nsv526374 5 145878088 145888784 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702670 S 2026 0 1 "" dgv355n21 5 145905547 145906182 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv527356,nsv518520 M 2026 0 2 "" nsv521909 5 145909795 145915081 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694680 S 2026 0 1 "" nsv517289 5 145912617 145915081 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv693155,nssv676619,nssv654213,nssv674497,nssv658545 M 2026 0 5 "" nsv5052 5 145918919 145952536 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2711 S 9 1 0 "" NA18555 dgv356n21 5 146014684 146030969 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv520218,nsv520071 M 2026 0 4 "" nsv528827 5 146028570 146030969 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705501 S 2026 0 1 "" nsv519847 5 146146571 146792840 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv682182,nssv680249,nssv659056,nssv700824,nssv682031,nssv674221 M 2026 3 3 "" nsv328338 5 146360375 146360449 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346916 M 24 "" nsv5053 5 146366325 146392739 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2549 S 9 0 1 "" NA18555 nsv327242 5 146376309 146376309 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv345820 M 24 "" dgv1861e1 5 146410036 146519693 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1323,essv3685 M 271 0 0 "" NA18943 nsv5055 5 146792865 146837617 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8164 S 9 0 1 "" NA12156 nsv5056 5 147057528 147091825 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2712 S 9 1 0 "" NA18555 nsv329560 5 147249519 147258903 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv348138 M 24 "" nsv520730 5 147265906 147266247 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697579 S 2026 1 0 "" dgv357n21 5 147278690 147283134 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv528013,nsv525042 M 2026 0 2 "" nsv523147 5 147282407 147289661 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698855 S 2026 1 0 "" nsv5057 5 147294697 147337502 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4868,nssv4867 M 9 1 0 "" NA19129 nsv441968 5 147307539 147318106 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv818388 5 147314138 147317357 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418458,nssv1418460 M 112 2 0 "" NA19193,NA19194 nsv830515 5 147441045 147582440 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445106,nssv1445108 M 95 1 1 "" nsv328025 5 147442349 147442664 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346603 M 24 "" nsv327946 5 147483212 147483277 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346524 M 24 "" nsv328735 5 147537449 147537449 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347313 M 24 "" dgv726n27 5 147628703 147669893 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv462479,nsv462480 M 1557 2 0 "" HGDP01095,HGDP01309 nsv5058 5 147673358 147706111 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3394 S 9 1 0 "" NA12878 nsv830516 5 147781297 147946286 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445109 S 95 0 1 "" nsv523792 5 147870317 147876501 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699620 S 2026 0 1 "" nsv328933 5 147907334 147914171 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347511 M 24 "" nsv462481 5 148110331 148152882 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538635 S 1557 0 1 "" NINDS_196 nsv508383 5 148243930 148346923 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622535 S 4 0 1 "" NA18994 nsv520887 5 148247599 148262123 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697671 S 2026 0 1 "" nsv830517 5 148313415 148531334 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445110 S 95 1 0 "" nsv329604 5 148366035 148366133 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv348182 M 24 "" nsv517567 5 148540080 148552843 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv652385,nssv687076,nssv690525 M 2026 3 0 "" nsv329799 5 148551353 148551440 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv348377 M 24 "" nsv328915 5 148557747 148557809 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347493 M 24 "" nsv521406 5 148765642 148783004 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698016 S 2026 0 1 "" nsv528923 5 148767855 148773386 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705613 S 2026 0 1 "" nsv519878 5 148767855 148778925 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697101 S 2026 0 1 "" nsv516607 5 148772954 148778925 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703724,nssv669518,nssv685882,nssv698712 M 2026 0 4 "" nsv516848 5 148850293 148882531 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv675709,nssv680174,nssv654412,nssv692456 M 2026 4 0 "" nsv518039 5 148850293 148919428 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695450 S 2026 1 0 "" nsv5059 5 148890826 148923609 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv503 S 9 1 0 "" NA19240 nsv516760 5 148958298 148988714 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv678440,nssv661158,nssv671065,nssv674646,nssv687641,nssv685211,nssv670659,nssv658391 M 2026 0 8 "" nsv5060 5 149053246 149099049 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6030 S 9 0 1 "" NA12156 esv32926 5 149105548 149107327 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv96028 S 51 1 0 "" 22127 nsv5061 5 149114147 149146148 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6031 S 9 1 0 "" NA12156 nsv462482 5 149176522 149192703 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538636 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00832 nsv462484 5 149185823 149212718 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538637 S 1557 0 1 "" NINDS_51 dgv727n27 5 149210923 149241005 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv462486,nsv462485 M 1557 2 0 "" HGDP00155,HGDP00161 nsv830518 5 149300567 149476896 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445111 S 95 0 1 "" nsv528113 5 149420837 149424340 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704655 S 2026 0 1 "" nsv528188 5 149420837 149430325 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704744 S 2026 1 0 "" nsv523125 5 149463954 149465965 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698827 S 2026 0 1 "" nsv5062 5 149477137 149521728 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2550 S 9 0 1 "" NA18555 nsv525243 5 149477370 149477421 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701333 S 2026 0 1 "" nsv329566 5 149502319 149502434 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv348144 M 24 "" nsv462487 5 149563529 149577148 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538640 S 1557 0 1 "" NINDS_78 nsv524540 5 149605280 149607616 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700490 S 2026 0 1 "" nsv525244 5 149646042 149655457 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701334 S 2026 0 1 "" dgv1862e1 5 149804786 150265935 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv13566,esv383 M 271 0 0 "" NA19160 nsv462488 5 149837653 149935902 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538641 S 1557 0 1 "" 1780862226_A nsv509095 5 149890929 149931730 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620837 S 4 1 0 "" NA15510 nsv5063 5 149957992 149977754 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8165 S 9 0 1 "" NA12156 nsv5064 5 149972575 150006117 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv504 S 9 1 0 "" NA19240 esv33898 5 150017626 150126218 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100045 S 51 0 1 "" 22086 dgv1863e1 5 150080197 150265935 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv10434,essv4708,essv306,essv6758,essv8434,essv2776,essv6300,essv1237,essv1790,essv13730,essv1017,essv16097,essv12542,essv14624,essv15218,essv14873,essv10896,essv9979,essv5188,essv7137,essv9040,essv7008,essv7171,essv8204,essv12823,essv14537,essv4172,essv15074,essv4959,essv10117,essv9406,essv5359,essv15549,essv11149,essv2040,essv9612,essv1826,essv4001,essv17012,essv10379,essv7575,essv8107,essv16732,essv20353,essv8943,essv13639,essv4415,essv859,essv6900,essv16466,essv1590,essv14431,essv4031,essv13130,essv16853,essv6399,essv16516,essv13439,essv7358,essv12514,essv13831,essv10215,essv10543,essv10628,essv17323,essv11436,essv3887,essv2591,essv11552,essv16337,essv5046,essv12392,essv14137,essv14104,essv17040,essv17148,essv1506,essv16204,essv15345,essv9799,essv8743,essv10841,essv9386,essv5740,essv15458,essv21999,essv15413,essv15687,essv15730,essv2330,essv18770,essv3824,essv10726,essv14722,essv3390,essv3703,essv5443,essv8362,essv2445,essv12655,essv2891,essv1956,essv580,essv14321,essv6036,essv11956,essv1135,essv2639,essv4648,essv5237,essv16068 M 271 0 0 "" NA11995,NA12236,NA12874,NA18500,NA18501,NA18502,NA18505,NA18515,NA18516,NA18522,NA18523,NA18537,NA18545,NA18547,NA18555,NA18562,NA18563,NA18570,NA18571,NA18572,NA18573,NA18576,NA18593,NA18594,NA18605,NA18609,NA18611,NA18612,NA18622,NA18624,NA18632,NA18635,NA18637,NA18853,NA18854,NA18855,NA18856,NA18857,NA18858,NA18861,NA18862,NA18863,NA18871,NA18912,NA18940,NA18942,NA18943,NA18945,NA18947,NA18949,NA18953,NA18959,NA18964,NA18967,NA18970,NA18976,NA18978,NA18980,NA18987,NA18990,NA18994,NA18995,NA18997,NA18998,NA18999,NA19000,NA19005,NA19092,NA19093,NA19094,NA19098,NA19099,NA19100,NA19102,NA19116,NA19119,NA19120,NA19127,NA19129,NA19130,NA19131,NA19132,NA19137,NA19139,NA19140,NA19141,NA19142,NA19144,NA19152,NA19159,NA19161,NA19171,NA19172,NA19173,NA19192,NA19193,NA19194,NA19200,NA19201,NA19202,NA19203,NA19205,NA19206,NA19207,NA19208,NA19209,NA19210,NA19211,NA19222,NA19238,NA19240 nsv5066 5 150081709 150126622 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8166 S 9 0 1 "" NA12156 nsv5067 5 150145350 150213522 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10477,nssv4869,nssv505,nssv9413,nssv2553,nssv2552 M 9 0 5 "" NA18517,NA18555,NA18956,NA19129,NA19240 nsv10758 5 150156493 150162053 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13372,nssv14058,nssv13785,nssv14206,nssv12589,nssv15621,nssv15042,nssv14821,nssv13675,nssv14309 M 31 0 10 Samples from several populations that are part of the HapMap project. "" NA18502,NA18537,NA18552,NA18564,NA18572,NA18860,NA18942,NA18980,NA19173,NA19240 nsv10759 5 150181427 150204688 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15072,nssv14339,nssv13402,nssv15132,nssv15687,nssv15854,nssv14008,nssv12619,nssv12649,nssv13790,nssv15463,nssv13705,nssv14118,nssv13547,nssv14851,nssv14236,nssv15651,nssv13815 M 31 0 16 Samples from several populations that are part of the HapMap project. "" NA18502,NA18504,NA18517,NA18537,NA18552,NA18563,NA18564,NA18572,NA18853,NA18860,NA18942,NA18980,NA19132,NA19144,NA19173,NA19240 esv33282 5 150185219 150201174 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101570,essv101184,essv93852,essv96769,essv101094,essv95233,essv98324,essv94757,essv101359,essv97073,essv97820,essv93077,essv95273,essv97328,essv101710,essv95771,essv94611,essv92870,essv92815,essv96186,essv96584,essv100093,essv96027,essv93547,essv93223,essv99692,essv92513,essv99178,essv100158,essv100568,essv100425,essv99536,essv96376,essv94242 M 51 33 1 "" 21603,21618,21634,21659,21693,21721,21772,21791,21805,21817,21837,21863,21872,21879,21909,21911,21932,21939,21944,22007,22011,22086,22127,22128,22170,22217,22233,22275,22286,22298,22300,22335,22371,22394 nsv442963 5 150185693 150198797 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv433477 5 150193165 150194892 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463358 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA18555 esv32978 5 150224038 150224268 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv96796 S 51 0 1 "" 21659 nsv482091 5 150254157 150264584 CNV Loss Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558452 S 1 0 1 "" KB1 nsv10760 5 150257795 150264114 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16260 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19221 nsv526742 5 150291815 150311793 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703085 S 2026 1 0 "" nsv509997 5 150318303 150324303 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622102,nssv618218 M 4 0 2 "" CHM,NA10860 nsv526224 5 150363596 150430429 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702490 S 2026 1 0 "" nsv462489 5 150408388 150419181 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538642 S 1557 0 1 "" 1780854097_A nsv330025 5 150453135 150457373 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv348603 M 24 "" nsv329096 5 150586038 150587063 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347674 M 24 "" nsv527485 5 150625831 150627349 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703932 S 2026 0 1 "" nsv527096 5 150858370 150885591 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703475 S 2026 0 1 "" nsv5068 5 150948425 150959747 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8167 S 9 0 1 "" NA12156 nsv5069 5 151038594 151071658 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8168 S 9 1 0 "" NA12156 nsv509998 5 151074133 151080133 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622103,nssv623987 M 4 0 2 "" NA10860,NA18994 nsv5070 5 151132755 151142251 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv506 S 9 1 0 "" NA19240 nsv509999 5 151306714 151312714 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618219 S 4 0 1 "" CHM nsv526375 5 151404007 151418410 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702671 S 2026 0 1 "" nsv5071 5 151418523 151452206 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9885,nssv10478,nssv2554,nssv507,nssv6032,nssv4870 M 9 0 6 "" NA12156,NA18507,NA18555,NA18956,NA19129,NA19240 nsv508384 5 151418775 151467519 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618780,nssv617514,nssv619963,nssv622536 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv329012 5 151436607 151442640 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347590 M 24 "" nsv328639 5 151456437 151456567 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347217 M 24 "" nsv5072 5 151470464 151510612 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6033 S 9 0 1 "" NA12156 nsv436988 5 151493576 151503057 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv466869 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA10838 nsv462490 5 151493576 151508024 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538643 S 1557 0 1 "" 1780854205_A nsv10762 5 151494886 151499562 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12821,nssv13837,nssv14038 M 31 0 3 Samples from several populations that are part of the HapMap project. "" NA11830,NA12872,NA19144 nsv818390 5 151495149 151496845 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417026 S 112 0 1 "" NA06994 nsv516251 5 151495149 151523321 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv652225,nssv676620,nssv663083,nssv662436,nssv651724,nssv665956,nssv653165,nssv669284,nssv666598,nssv678333,nssv676814,nssv667804,nssv671662,nssv671194,nssv684941,nssv680680,nssv665878,nssv673244,nssv689429,nssv676163,nssv657752,nssv665310,nssv691169,nssv688130,nssv652675,nssv677704,nssv670594,nssv658954,nssv681757,nssv652805,nssv654785,nssv670325,nssv654014,nssv684913,nssv661990,nssv665594,nssv670105,nssv671970,nssv671273,nssv656619,nssv674571,nssv655514,nssv664677,nssv658477,nssv665103,nssv691000,nssv671378,nssv656172,nssv661659,nssv658844,nssv677224,nssv663051,nssv685748,nssv679507,nssv691529,nssv674282,nssv687228,nssv663785,nssv690199,nssv670292,nssv686371,nssv654922,nssv655191,nssv674595 M 2026 0 64 "" nsv442964 5 151495579 151498544 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv5073 5 151532039 151577233 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2555 S 9 0 1 "" NA18555 nsv515540 5 151561873 151562404 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv670326,nssv688869,nssv663862,nssv682183,nssv678914,nssv683981 M 2026 0 6 "" nsv830519 5 151568820 151780385 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445112 S 95 0 1 "" nsv5074 5 151990884 152035972 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8169 S 9 0 1 "" NA12156 nsv433479 5 152199995 152211719 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463360 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA18956 nsv516577 5 152304894 152340687 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv675610,nssv701385,nssv674596,nssv699917,nssv669285,nssv676759,nssv693296,nssv674547 M 2026 8 0 "" nsv5075 5 152624665 152659404 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8170 S 9 0 1 "" NA12156 nsv441969 5 152668371 152672600 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv507300 5 152935656 152941656 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621822 S 4 1 0 "" NA10860 dgv1864e1 5 153062206 153273106 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv104,essv1940 M 271 0 0 "" NA18959 nsv328936 5 153282632 153283695 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347514 M 24 "" nsv509096 5 153285978 153317515 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618047,nssv620838 M 4 2 0 "" CHM,NA15510 nsv5078 5 153298914 153327187 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4871 S 9 1 0 "" NA19129 nsv508385 5 153317515 153437875 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622538,nssv622537 M 4 0 1 "" NA18994 nsv328754 5 153460839 153460916 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347332 M 24 "" nsv5079 5 153675909 153707808 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3395 S 9 1 0 "" NA12878 nsv521696 5 153707075 153715677 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698317 S 2026 0 1 "" nsv830520 5 153732038 153913508 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445113 S 95 0 1 "" nsv5080 5 153741124 153765986 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3396 S 9 1 0 "" NA12878 nsv524343 5 153777068 153778073 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700250 S 2026 0 1 "" nsv327262 5 153943658 153943866 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv345840 M 24 "" nsv520916 5 153955769 153975507 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697686 S 2026 0 1 "" nsv462491 5 154025473 154046398 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538644 S 1557 0 1 "" 1782681296_A nsv510000 5 154046810 154052810 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618220 S 4 0 1 "" CHM nsv830521 5 154127760 154224459 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445114 S 95 1 0 "" nsv5081 5 154251778 154254089 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4872 S 9 1 0 "" NA19129 nsv327782 5 154296111 154296195 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346360 M 24 "" nsv462492 5 154469586 154504103 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538645 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00790 nsv528238 5 154581940 154589273 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704800 S 2026 0 1 "" nsv5082 5 154643921 154652437 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8171 S 9 0 1 "" NA12156 nsv462493 5 154671354 154786696 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538646 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01300 nsv5083 5 154761539 154776923 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8172 S 9 0 1 "" NA12156 nsv518023 5 154891408 154903174 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695433 S 2026 1 0 "" nsv5084 5 154894486 154898073 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8173 S 9 1 0 "" NA12156 nsv5085 5 154958701 155003628 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8174 S 9 0 1 "" NA12156 nsv523530 5 155060940 155061502 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699304 S 2026 0 1 "" nsv5086 5 155157519 155172823 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9414 S 9 1 0 "" NA18517 dgv217n6 5 155244362 155245158 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv329554,nsv329841 M 24 "" dgv1865e1 5 155313275 155548476 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv721,essv17483 M 271 0 0 "" NA12762 nsv10763 5 155336532 155340587 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14148 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18564 nsv279 5 155393362 155433064 CNV Loss Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv279 S 1 0 1 "" NA15510 nsv5087 5 155393362 155448776 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv11113,nssv9415,nssv508,nssv9678 M 9 0 4 "" NA15510,NA18507,NA18517,NA19240 nsv10764 5 155405622 155427617 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15162,nssv15884,nssv13835,nssv14343,nssv13652,nssv15192,nssv13867,nssv15681 M 31 0 7 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10847,NA11830,NA18502,NA18517,NA18860 nsv442965 5 155409350 155415307 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" esv33066 5 155411082 155427618 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101445,essv101178,essv96804,essv100918,essv95086,essv98149,essv94038,essv101297,essv97009,essv97839,essv95535,essv93129,essv97353,essv101631,essv94487,essv98582,essv95944,essv93459,essv93336,essv94998,essv92632,essv96568,essv99241,essv100186,essv96320 M 51 25 0 "" 21603,21618,21659,21693,21721,21772,21802,21805,21817,21837,21847,21863,21879,21909,21932,22085,22127,22128,22170,22231,22233,22261,22275,22286,22371 essv13946 5 155497577 155530032 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19160 nsv517943 5 155499122 155523894 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695354 S 2026 0 1 "" essv14257 5 155509005 155515691 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19100 dgv1866e1 5 155509005 155530680 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv12097,essv9518,essv8528,essv8253,essv10617,essv9494,essv16372,essv13339,essv9567 M 271 0 0 "" NA18500,NA18501,NA18521,NA18523,NA19099,NA19153,NA19154,NA19172,NA19211 nsv10765 5 155509177 155525073 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13820 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18853 nsv442966 5 155509796 155522862 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv1867e1 5 155512692 155515691 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv9526,essv15172 M 271 0 0 "" NA19210,NA19223 nsv517106 5 155513021 155523894 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv686728,nssv657998,nssv659542,nssv691924,nssv682524,nssv664959,nssv669200,nssv682303,nssv681342,nssv675236,nssv690081,nssv667923,nssv655315,nssv656552,nssv690414,nssv670660,nssv651790,nssv687598,nssv653796,nssv679478,nssv666084,nssv655794,nssv657260,nssv684410 M 2026 0 24 "" nsv830522 5 155532135 155687094 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445115 S 95 1 0 "" nsv328185 5 155545435 155545435 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346763 M 24 "" nsv510001 5 155673740 155679740 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623988 S 4 0 1 "" NA18994 nsv830523 5 155895901 156039542 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445117,nssv1445116 M 95 2 0 "" nsv830524 5 155941172 156118619 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445119 S 95 1 0 "" esv33782 5 155948693 155949278 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99767,essv99308 M 51 1 1 "" 22086,22275 esv33006 5 155954389 155956152 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99167 S 51 1 0 "" 22275 nsv518243 5 156163554 156215875 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694216 S 2026 0 1 "" dgv358n21 5 156198101 156215993 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv525058,nsv526991 M 2026 0 2 "" nsv522295 5 156206059 156215875 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694153 S 2026 0 1 "" nsv528418 5 156426318 156437811 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705010 S 2026 0 1 "" nsv515686 5 156617489 156631707 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv675096,nssv664386 M 2026 0 2 "" nsv830526 5 156685117 156887519 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445120 S 95 0 1 "" nsv5089 5 156814490 156850002 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8175 S 9 0 1 "" NA12156 nsv462497 5 156821675 156853489 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538648 S 1557 0 1 "" NINDS_64 dgv1868e1 5 156930186 157165622 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv405,essv17581 M 271 0 0 "" NA12762 nsv527582 5 156969990 156972315 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704043 S 2026 0 1 "" nsv10766 5 157041103 157044241 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16290 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19221 nsv5090 5 157110048 157145028 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4873,nssv8176 M 9 2 0 "" NA12156,NA19129 nsv509097 5 157126810 157160099 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619427,nssv620839 M 4 2 0 "" NA10860,NA15510 nsv521000 5 157146075 157180442 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv693477,nssv679650 M 2026 0 2 "" nsv507301 5 157264550 157270550 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621823 S 4 1 0 "" NA10860 nsv523270 5 157319734 157327384 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699004 S 2026 0 1 "" nsv5091 5 157323204 157333916 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10479 S 9 1 0 "" NA18956 nsv523439 5 157323538 157327384 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699195 S 2026 0 1 "" nsv328266 5 157518451 157518451 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346844 M 24 "" nsv330163 5 157547855 157550704 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv348741 M 24 "" nsv520127 5 157579894 157587622 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697237 S 2026 0 1 "" nsv7372 5 157711581 157749781 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10480 S 9 0 0 "" NA18956 nsv5092 5 157795325 157831625 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8177,nssv3397 M 9 2 0 "" NA12156,NA12878 nsv830527 5 157904521 157940005 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445122,nssv1445121 M 95 0 2 "" nsv520936 5 157915692 157916350 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697697 S 2026 0 1 "" nsv5093 5 158051408 158085329 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4874 S 9 1 0 "" NA19129 nsv830528 5 158057800 158272607 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445123 S 95 1 0 "" nsv5094 5 158179823 158211230 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6034 S 9 1 0 "" NA12156 nsv524803 5 158336707 158356323 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700795 S 2026 0 1 "" nsv526407 5 158407789 158435306 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702707 S 2026 0 1 "" esv33911 5 158613868 158622409 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv92912 S 51 1 0 "" 21939 nsv522395 5 158705160 158706357 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694164 S 2026 0 1 "" nsv5095 5 158779411 158811881 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6035 S 9 1 0 "" NA12156 nsv830529 5 158814934 158982857 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445124 S 95 1 0 "" esv2422299 5 158886840 159119774 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161414 S 181 1 0 "" ND01583 nsv462499 5 159030472 159257929 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538649 S 1557 1 0 "" NINDS_39 nsv830530 5 159136354 159190885 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445125 S 95 1 0 "" nsv329541 5 159222675 159223527 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv348119 M 24 "" nsv462500 5 159244482 159281476 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538650 S 1557 0 1 "" 1780854479_A nsv327404 5 159252882 159252882 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv345982 M 24 "" nsv830531 5 159255922 159435630 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445126 S 95 0 1 "" nsv528868 5 159399329 159422033 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705548 S 2026 0 1 "" dgv359n21 5 159598077 159654250 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv516446,nsv521745 M 2026 0 5 "" nsv5096 5 159628533 159663842 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3398 S 9 1 0 "" NA12878 nsv5097 5 159730620 159773517 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8179 S 9 0 1 "" NA12156 nsv527693 5 159765486 159771241 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704171 S 2026 0 1 "" nsv327997 5 159902383 159902434 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346575 M 24 "" nsv507302 5 159905981 159911981 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620326 S 4 1 0 "" NA15510 nsv5098 5 160109206 160130740 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9416 S 9 1 0 "" NA18517 nsv525166 5 160130499 160131458 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701240 S 2026 0 1 "" nsv517932 5 160167703 160222196 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695344 S 2026 1 0 "" nsv528076 5 160199409 160203637 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704612 S 2026 0 1 "" nsv830532 5 160200903 160397275 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445127 S 95 0 1 "" nsv830533 5 160397276 160537623 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445128 S 95 1 0 "" dgv1869e1 5 160471139 160490574 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1086,essv7457,essv5957 M 271 0 0 "" NA18577,NA18582,NA18990 dgv1870e1 5 160471139 160626797 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv15767,essv3011,essv2600,essv20773,essv24270,essv2473,essv893,essv12396,essv18969,essv2798,essv24697,essv1010,essv7026,essv4824,essv9071,essv4053,essv6257,essv20016,essv9931,essv19278,essv23914,essv16701,essv5197,essv16925,essv16738,essv5903,essv9731,essv14543,essv3366,essv2009,essv4900,essv3757,esv803,essv17089 M 271 0 0 "" NA07048,NA10838,NA10856,NA11829,NA12005,NA12146,NA12814,NA18540,NA18550,NA18561,NA18611,NA18612,NA18635,NA18636,NA18872,NA18913,NA18945,NA18949,NA18961,NA18981,NA18987,NA18990,NA18999,NA19000,NA19005,NA19131,NA19132,NA19142,NA19144,NA19145,NA19172,NA19202,NA19238 nsv441971 5 160473766 160482276 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv522074 5 160474005 160480952 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694845 S 2026 0 1 "" nsv818391 5 160474005 160480952 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417238 S 112 0 1 "" NA18577 nsv5100 5 160623695 160668375 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8180 S 9 0 1 "" NA12156 nsv507303 5 160645894 160651894 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620327,nssv617694,nssv622955 M 4 3 0 "" CHM,NA15510,NA18994 nsv515649 5 160999467 161019472 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv675237,nssv680922,nssv666160,nssv663291,nssv679479,nssv664238,nssv654650,nssv675889,nssv662454,nssv693703,nssv659473,nssv657116,nssv655567,nssv690108,nssv684701 M 2026 0 15 "" nsv5101 5 161106405 161151256 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8181 S 9 0 1 "" NA12156 nsv462501 5 161385663 161418633 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538651 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00741 nsv522344 5 161594925 161604457 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695124 S 2026 0 1 "" nsv328443 5 161680743 161680743 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347021 M 24 "" nsv437956 5 161858183 161884064 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv468711,nssv468710 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA10854,NA12801 nsv5102 5 161877760 161918459 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3400,nssv509,nssv2556 M 9 3 0 "" NA12878,NA18555,NA19240 nsv830534 5 161954096 162134231 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445130 S 95 0 1 "" nsv5103 5 162077677 162105109 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2713 S 9 1 0 "" NA18555 nsv328365 5 162086550 162091776 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346943 M 24 "" nsv327884 5 162141567 162141567 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346462 M 24 "" nsv5104 5 162262646 162295170 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3401 S 9 1 0 "" NA12878 nsv830535 5 162321490 162501803 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445131 S 95 1 0 "" nsv524495 5 162469969 162483304 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700433 S 2026 0 1 "" nsv511117 5 162638435 162682662 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624301 S 4 0 0 "" NA18994 nsv507304 5 162642539 162648539 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617695,nssv621824 M 4 2 0 "" CHM,NA10860 dgv728n27 5 162682551 162728762 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv462503,nsv462502 M 1557 0 2 "" NINDS_158,NINDS_71 nsv520335 5 162682551 162728762 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv688966,nssv662990 M 2026 0 2 "" nsv830538 5 162737024 162901231 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445132,nssv1445134,nssv1445133 M 95 1 2 "" nsv519801 5 162842294 162848991 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv678900,nssv658774,nssv683134,nssv681104,nssv659485,nssv676038 M 2026 0 6 "" nsv524084 5 162842294 162857364 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699953 S 2026 0 1 "" nsv441972 5 163106031 163113414 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv830539 5 163632146 163775329 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445135 S 95 1 0 "" nsv462507 5 163713149 163781686 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538655 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00512 nsv462508 5 163757536 163815733 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538656 S 1557 0 1 "" 1798860114_A nsv327486 5 163911005 163911078 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346064 M 24 "" nsv830540 5 163934742 164108788 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445136 S 95 1 0 "" nsv5105 5 163985777 164020703 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv510 S 9 1 0 "" NA19240 nsv830541 5 164021367 164191850 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445137 S 95 0 1 "" nsv526240 5 164035661 164037379 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702509 S 2026 0 1 "" nsv327543 5 164163962 164164806 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346121 M 24 "" nsv528624 5 164252013 164633779 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705254 S 2026 0 1 "" dgv218n6 5 164298876 164299200 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv329947,nsv328520 M 24 "" nsv5106 5 164310896 164346141 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv511 S 9 1 0 "" NA19240 nsv525870 5 164375672 164381466 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702070 S 2026 0 1 "" nsv5107 5 164414179 164448118 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8182 S 9 1 0 "" NA12156 nsv526419 5 164607819 164687752 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702720 S 2026 1 0 "" nsv515650 5 164656183 164656251 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv672745,nssv664239,nssv665635,nssv666218,nssv689589,nssv674912,nssv669391,nssv662937,nssv679284,nssv675340,nssv671405,nssv674260,nssv690484,nssv656525 M 2026 0 14 "" nsv524389 5 164656183 164659385 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700306 S 2026 0 1 "" nsv5108 5 165147571 165180165 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6037 S 9 1 0 "" NA12156 dgv1871e1 5 165155278 165334527 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1892,esv145,essv15095,essv887,essv16211 M 271 0 0 "" NA18976,NA19000,NA19129,NA19161 nsv10767 5 165155280 165162407 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14881,nssv12679,nssv14858,nssv13735,nssv16320,nssv13030,nssv14889,nssv12851,nssv15717,nssv15222 M 31 0 10 Samples from several populations that are part of the HapMap project. "" NA12155,NA12740,NA12802,NA12872,NA18502,NA18572,NA18980,NA19132,NA19221,NA19240 nsv10768 5 165338688 165352282 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15711 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18860 nsv329786 5 165414024 165414304 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv348364 M 24 "" dgv207e55 5 165455406 166010000 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv2752063,esv2752062 M 771 2 0 "" BEC_314,BEC_405 nsv521633 5 165470868 165515461 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698252 S 2026 0 1 "" nsv830542 5 165508395 165668895 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445138 S 95 1 0 "" nsv5109 5 165684787 165724784 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8183 S 9 0 1 "" NA12156 nsv516071 5 165700272 165711472 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv656640,nssv666023,nssv670840 M 2026 0 3 "" nsv5111 5 165767871 165798835 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9417 S 9 0 1 "" NA18517 dgv112n17 5 165770607 165782628 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437473,nsv437472 M 60 0 2 "" NA18914,NA19173 nsv10769 5 165771092 165941741 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15914,nssv14369 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18517,NA19173 nsv442968 5 165772240 165782533 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv519873 5 165772698 165780000 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv662215,nssv660847,nssv659227,nssv659995,nssv663498 M 2026 0 5 "" nsv330060 5 165946954 165948182 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv348638 M 24 "" nsv830543 5 166079436 166247339 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445139 S 95 0 1 "" nsv5112 5 166169701 166203886 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8184 S 9 1 0 "" NA12156 nsv328321 5 166226722 166226913 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346899 M 24 "" nsv830544 5 166334955 166511816 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445141 S 95 1 0 "" nsv5113 5 166389950 166434701 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8186 S 9 0 1 "" NA12156 nsv830545 5 166480038 166584839 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445142 S 95 0 1 "" nsv5114 5 166669417 166702071 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6038 S 9 1 0 "" NA12156 nsv507305 5 166947478 166953478 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621825 S 4 1 0 "" NA10860 nsv510002 5 166963642 166969642 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621274,nssv618221 M 4 0 2 "" CHM,NA15510 nsv327594 5 167005750 167005832 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346172 M 24 "" nsv5115 5 167034489 167079598 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8187 S 9 0 1 "" NA12156 nsv5116 5 167084894 167118242 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4875 S 9 1 0 "" NA19129 nsv462511 5 167207665 167257387 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538657 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00708 nsv830546 5 167235713 167388849 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445143 S 95 0 1 "" nsv507306 5 167332472 167338472 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622957,nssv620328 M 4 2 0 "" NA15510,NA18994 nsv517414 5 167395343 167397596 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv651956,nssv663958,nssv705804 M 2026 0 3 "" nsv510003 5 167472231 167478231 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623989,nssv622104,nssv618222 M 4 0 3 "" CHM,NA10860,NA18994 nsv510004 5 167508108 167514108 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623990 S 4 0 1 "" NA18994 nsv328697 5 167545500 167545555 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347275 M 24 "" dgv219n6 5 167545519 167545574 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv327429,nsv329934 M 24 "" nsv5117 5 167599279 167644435 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8188 S 9 0 1 "" NA12156 nsv462512 5 167604683 167634619 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538658 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00551 nsv527385 5 167621874 167623786 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703820 S 2026 1 0 "" nsv5118 5 167653034 167677105 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3402 S 9 1 0 "" NA12878 nsv5119 5 167657565 167698654 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8189 S 9 0 1 "" NA12156 nsv5120 5 167791218 167825708 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3403 S 9 1 0 "" NA12878 nsv516697 5 167846088 167846181 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv663011,nssv685425,nssv670211,nssv692457,nssv676877,nssv677952,nssv682891 M 2026 0 7 "" dgv360n21 5 168107869 168112659 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv516387,nsv526559 M 2026 0 6 "" nsv462513 5 168120736 168130379 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538659 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01215 nsv5122 5 168195330 168239781 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4603 S 9 0 1 "" NA19129 nsv328526 5 168202071 168204479 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347104 M 24 "" nsv328748 5 168692548 168692548 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347326 M 24 "" nsv328631 5 168720337 168721513 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347209 M 24 "" nsv507307 5 168797970 168803970 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620329,nssv617696,nssv621826,nssv622958 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv328498 5 168817149 168819304 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347076 M 24 "" nsv5123 5 168946615 168954855 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8190 S 9 1 0 "" NA12156 nsv5124 5 168991001 169036279 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8191 S 9 0 1 "" NA12156 nsv521295 5 169167656 169173327 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697901 S 2026 0 1 "" nsv328128 5 169315636 169321560 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346706 M 24 "" nsv329782 5 169400269 169400527 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv348360 M 24 "" nsv525224 5 169434105 169442970 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701312 S 2026 0 1 "" nsv830547 5 169443404 169617214 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445145,nssv1445144 M 95 1 1 "" nsv462515 5 169625132 169892015 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538660 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00706 nsv5125 5 169649376 169684821 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3404 S 9 1 0 "" NA12878 nsv525397 5 169786874 169796533 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701520 S 2026 0 1 "" nsv5126 5 169799905 169834544 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv512 S 9 1 0 "" NA19240 nsv5127 5 169818210 169828267 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8192 S 9 0 1 "" NA12156 nsv462516 5 169903611 169930216 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538661 S 1557 0 1 "" 1798860251_A nsv830549 5 169928982 170083967 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445146 S 95 1 0 "" nsv462518 5 169942958 169963891 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538663 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01157 nsv5128 5 170025950 170060427 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3405 S 9 1 0 "" NA12878 nsv510005 5 170072945 170078945 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622105,nssv623991 M 4 0 2 "" NA10860,NA18994 nsv330149 5 170091396 170091484 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv348727 M 24 "" nsv327390 5 170162237 170162237 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv345968 M 24 "" nsv520782 5 170176011 170533488 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697606 S 2026 1 0 "" nsv5129 5 170267526 170315700 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10482 S 9 0 1 "" NA18956 nsv328840 5 170275643 170275777 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347418 M 24 "" nsv507308 5 170319995 170325995 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622959,nssv620330,nssv621827 M 4 3 0 "" NA10860,NA15510,NA18994 nsv830550 5 170342439 170518753 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445147 S 95 0 1 "" nsv508386 5 170434788 170506499 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619965 S 4 0 1 "" NA15510 nsv525376 5 170531269 170532089 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701497 S 2026 0 1 "" nsv518091 5 170531269 170533488 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695503 S 2026 0 1 "" nsv5130 5 170547211 170577542 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv11115 S 9 1 0 "" NA15510 nsv5131 5 170606177 170651365 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8193 S 9 0 1 "" NA12156 nsv830551 5 170679527 170854638 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445148,nssv1445149 M 95 0 2 "" nsv508387 5 170694948 170775787 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619966,nssv622539 M 4 0 2 "" NA15510,NA18994 nsv830552 5 170697168 170939044 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445150 S 95 1 0 "" nsv527212 5 170862039 170893905 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703612 S 2026 0 1 "" nsv508388 5 170898655 170951610 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619967 S 4 0 1 "" NA15510 nsv830553 5 170996420 171159856 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445152 S 95 0 1 "" nsv462522 5 171200808 171218237 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538664 S 1557 0 1 "" 1780862412_A nsv328032 5 171253057 171257370 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346610 M 24 "" nsv462523 5 171408294 171456041 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538665 S 1557 0 1 "" 1780862520_A nsv10770 5 171469426 171475018 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15493 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18504 dgv1872e1 5 171473028 171667877 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv24849,essv1894,essv12241,essv472,essv2010,essv24937,esv323,essv2260,essv885,essv19384,essv11981,essv18988,essv21019,essv19590,essv5264,essv349 M 271 0 0 "" NA06991,NA06994,NA07000,NA11840,NA12005,NA12864,NA18517,NA18624,NA18949,NA18952,NA18966,NA18971,NA18976,NA19000,NA19101 nsv10771 5 171485650 171487465 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15523 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18504 nsv830554 5 171571913 171721123 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445153 S 95 0 1 "" esv2422244 5 171886949 171987318 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161244 S 181 1 0 "" ND05536 dgv1873e1 5 171913937 172148018 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv15599,essv16132,essv12593,essv11010,esv871,essv9944 M 271 0 0 "" NA19098,NA19100,NA19137,NA19143,NA19145 nsv462525 5 171924518 171966705 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538666 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01351 nsv330085 5 171930558 171930677 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv348663 M 24 "" nsv10773 5 171934518 171936707 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14911 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19240 esv34432 5 171950809 172112189 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6986620,essv6978451,essv6978452,essv6978453 M 771 1 0 "" NA19100 essv10497 5 171966705 172095541 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19143 nsv462526 5 171975920 172012494 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538667 S 1557 0 1 "" 1780862094_A nsv523045 5 172012494 172087612 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698728 S 2026 1 0 "" dgv729n27 5 172012494 172103875 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv462530,nsv462527 M 1557 2 0 "" HGDP00642,HGDP01259 nsv441974 5 172013141 172095539 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv208e55 5 172015884 172112189 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv34944,esv34866,esv35050 M 771 3 0 "" NA19098,NA19137,NA19145 dgv1874e1 5 172015884 172113303 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv13987,essv14258,essv14666 M 271 0 0 "" NA19098,NA19100,NA19145 essv9266 5 172015884 172148018 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19137 nsv818392 5 172023755 172088612 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418152,nssv1418153,nssv1416935 M 112 3 0 "" NA19137,NA19143,NA19145 nsv522263 5 172025104 172028971 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695042 S 2026 0 1 "" nsv462531 5 172071392 172109509 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538671 S 1557 0 1 "" NINDS_70 nsv507309 5 172169422 172175422 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617697 S 4 1 0 "" CHM nsv830555 5 172226284 172393713 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445154 S 95 0 1 "" nsv515804 5 172257584 172283244 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv664831,nssv656845,nssv691991,nssv689520,nssv704411,nssv687503,nssv686685 M 2026 0 7 "" nsv462532 5 172273428 172287645 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538672 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01001 nsv517972 5 172274523 172302375 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695384 S 2026 0 1 "" dgv361n21 5 172343115 172345280 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv521290,nsv521878 M 2026 0 2 "" nsv327510 5 172391866 172400879 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346088 M 24 "" nsv507310 5 172444582 172450582 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617698 S 4 1 0 "" CHM nsv517734 5 172537733 172544254 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv653043,nssv656340,nssv679444 M 2026 0 3 "" nsv526551 5 172622438 172624933 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702865 S 2026 0 1 "" nsv521433 5 172668895 172672935 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698044 S 2026 0 1 "" esv33443 5 172905343 172907141 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101608,essv98867,essv94101,essv94565,essv96156,essv99627,essv95004 M 51 0 7 "" 21603,21606,21802,21932,22007,22217,22231 nsv328217 5 172905621 172907360 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346795 M 24 "" esv33597 5 172923627 172924458 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101694,essv94559,essv93490,essv93320,essv99717,essv99219,essv100148 M 51 7 0 "" 21909,21932,22128,22170,22217,22275,22286 nsv5133 5 172932301 172948992 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv513 S 9 1 0 "" NA19240 esv33991 5 172935228 172938093 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98678 S 51 1 0 "" 21606 nsv5134 5 173002485 173017891 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8194 S 9 0 1 "" NA12156 nsv5135 5 173120333 173153635 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8196 S 9 1 0 "" NA12156 nsv327645 5 173125554 173125554 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346223 M 24 "" nsv329407 5 173125560 173125560 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347985 M 24 "" nsv5136 5 173151657 173196490 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8197 S 9 0 1 "" NA12156 nsv510006 5 173203014 173209014 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623992,nssv618223 M 4 0 2 "" CHM,NA18994 nsv521607 5 173229975 173233293 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698224 S 2026 0 1 "" dgv113n17 5 173396730 173405426 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437475,nsv437474 M 60 0 2 "" NA18503,NA19202 nsv5137 5 173453723 173498490 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8198 S 9 0 1 "" NA12156 nsv521573 5 173515657 173525193 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698189 S 2026 0 1 "" nsv462534 5 173524966 173549305 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538673 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01190 nsv328934 5 173573049 173573141 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347512 M 24 "" nsv441975 5 173633789 173635583 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv1875e1 5 173726296 173745954 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv18507,esv900 M 271 0 0 "" NA12763 nsv327890 5 173949969 173958439 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346468 M 24 "" nsv5138 5 174051532 174066729 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8199 S 9 0 1 "" NA12156 nsv5139 5 174091546 174122435 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8200 S 9 1 0 "" NA12156 nsv509099 5 174098223 174107720 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619429,nssv623460 M 4 2 0 "" NA10860,NA18994 nsv462535 5 174272822 174292823 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538674 S 1557 0 1 "" 1780854325_A nsv5140 5 174324530 174369174 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8201 S 9 0 1 "" NA12156 nsv830556 5 174327212 174509430 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445155 S 95 1 0 "" nsv327895 5 174342440 174342495 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346473 M 24 "" nsv441976 5 174368627 174371849 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv520029 5 174407468 174410242 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697186 S 2026 0 1 "" nsv516982 5 174409070 174410242 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv668564,nssv690109,nssv653550,nssv659474,nssv693171,nssv671946,nssv656500,nssv660601,nssv667583,nssv667473 M 2026 0 10 "" nsv523084 5 174410242 174414039 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698776 S 2026 0 1 "" nsv528482 5 174501709 174509673 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705085 S 2026 0 1 "" nsv517816 5 174555689 174569183 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695221 S 2026 0 1 "" nsv521964 5 174604762 174607725 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694732 S 2026 0 1 "" nsv329210 5 174647501 174650495 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347788 M 24 "" nsv329773 5 174713522 174722767 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv348351 M 24 "" nsv519401 5 174783256 174787755 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv683866,nssv674913,nssv655943 M 2026 3 0 "" nsv469707 5 174876083 175052752 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649728 M 265 0 2 Samples from several populations that are part of the HapMap project. "" nsv5141 5 174962805 175008591 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6039 S 9 0 1 "" NA12156 nsv329372 5 175148325 175148401 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347950 M 24 "" nsv462538 5 175208091 175243963 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538675 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00815 nsv5142 5 175259961 175292340 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv514 S 9 1 0 "" NA19240 nsv10774 5 175278310 175284365 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15944,nssv15553 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18504,NA18517 dgv1876e1 5 175279234 175696974 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv13977,esv645,essv7837,essv11487 M 271 0 0 "" NA18558,NA18856,NA19098 esv34563 5 175279396 175690322 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6978433,essv6986615 M 771 1 0 "" NA19098 nsv7373 5 175280232 177317639 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv515,nssv6040,nssv9419,nssv9420,nssv4877,nssv4878,nssv2557 M 9 0 0 "" NA12156,NA18517,NA18555,NA19129,NA19240 nsv10775 5 175298491 175314910 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15252 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18502 nsv10776 5 175326756 175329309 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16350 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19221 dgv1877e1 5 175371041 175696974 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv15952,essv12566,essv14252,essv17369,essv17348,essv16145 M 271 0 0 "" NA18515,NA18517,NA18856,NA19098,NA19100 nsv10777 5 175390888 175400000 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14266,nssv14919,nssv14941,nssv14373,nssv14068,nssv13865,nssv13850 M 31 0 7 Samples from several populations that are part of the HapMap project. "" NA07048,NA10847,NA12740,NA18552,NA18853,NA19144,NA19240 nsv441977 5 175409726 175583090 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv10778 5 175454671 175457649 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14399,nssv13845 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18537,NA19173 nsv10779 5 175476662 175483713 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16253 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18972 nsv830557 5 175482233 175679466 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445156 S 95 0 1 "" nsv10780 5 175486535 175494657 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15974 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18517 dgv730n27 5 175492445 175551861 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv462551,nsv462545,nsv462543,nsv462544,nsv462540,nsv462541,nsv462542,nsv462552 M 1557 8 0 "" HGDP00543,HGDP00913,HGDP00918,HGDP00926,HGDP00934,HGDP00940,HGDP01406,HGDP01412 nsv818393 5 175492445 175551861 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416444,nssv1416445,nssv1416353 M 112 3 0 "" NA18515,NA18517,NA18856 dgv731n27 5 175492445 175619697 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv462546,nsv462553,nsv462547 M 1557 3 0 "" HGDP00727,HGDP00928,HGDP00994 nsv516952 5 175492445 175619697 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv673974,nssv690922,nssv680357,nssv653551,nssv657351,nssv675452,nssv653216,nssv690260,nssv698392,nssv680439,nssv672429,nssv689274,nssv684034,nssv678735,nssv683597,nssv681513,nssv666952,nssv653330,nssv685357,nssv664170,nssv686316,nssv679715 M 2026 13 9 "" nsv462548 5 175492445 175663413 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538685 S 1557 1 0 "" 1780854599_A nsv462549 5 175492445 175743739 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538686 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01285 nsv10781 5 175494657 175546842 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16004,nssv14433 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA07048,NA18517 esv33221 5 175496653 175504597 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv96137 S 51 0 1 "" 22007 nsv433374 5 175503757 175561995 CNV Gain Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463255 S 9 1 0 Samples from several populations that are part of the HapMap project. "" NA18517 dgv209e55 5 175503757 175571000 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv34852,esv34486,esv34967 M 771 3 0 "" NA18517,NA18856,NA19100 nsv10782 5 175546435 175566860 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14256,nssv14888,nssv15282,nssv14296,nssv16380,nssv16034 M 31 4 2 Samples from several populations that are part of the HapMap project. "" NA10863,NA12155,NA18502,NA18517,NA18552,NA19221 nsv510007 5 175589796 175595796 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618224 S 4 0 1 "" CHM esv33353 5 175590761 175647615 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101541,essv97481,essv101269,essv93814,essv100812,essv96753,essv101033,essv95145,essv94818,essv94032,essv101375,essv94395,essv96967,essv97963,essv95523,essv93121,essv95351,essv97306,essv101643,essv95793,essv94542,essv99058,essv92900,essv92763,essv93663,essv96154,essv96595,essv96036,essv93480,essv93318,essv99731,essv94967,essv92635,essv96556,essv99170,essv97642,essv100143,essv100478,essv100438,essv99392,essv98447,essv96337,essv94248 M 51 1 42 "" 21603,21616,21618,21634,21656,21659,21693,21721,21791,21802,21805,21808,21817,21837,21847,21863,21872,21879,21909,21911,21932,21938,21939,21944,21972,22007,22011,22127,22128,22170,22217,22231,22233,22261,22275,22278,22286,22298,22300,22335,22352,22371,22394 nsv5144 5 175797036 175807541 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8202 S 9 0 1 "" NA12156 nsv521107 5 175848855 175859207 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694417 S 2026 0 1 "" nsv516244 5 175879657 175897089 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv674179,nssv663587,nssv669812,nssv678249,nssv696947,nssv667295,nssv698107,nssv657510,nssv669978,nssv667007 M 2026 0 10 "" nsv527791 5 175932134 175942731 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704283 S 2026 0 1 "" nsv462556 5 176013036 176031139 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538691 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00815 nsv462557 5 176101113 176226309 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538692 S 1557 0 1 "" NINDS_70 nsv509100 5 176130087 176195586 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623461 S 4 1 0 "" NA18994 dgv732n27 5 176167681 176242804 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv462559,nsv462560 M 1557 0 2 "" NINDS_56,NINDS_78 nsv462562 5 176195755 176242804 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538696 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01215 nsv328116 5 176218682 176218771 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346694 M 24 "" dgv362n21 5 176238284 176248807 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv517492,nsv526781 M 2026 0 9 "" nsv519416 5 176242804 176248807 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696841 S 2026 1 0 "" dgv363n21 5 176291214 176602093 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv523163,nsv524656 M 2026 2 0 "" nsv5145 5 176316986 176326081 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6041 S 9 0 1 "" NA12156 nsv509101 5 176403706 176494970 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619430 S 4 1 0 "" NA10860 nsv482093 5 176449157 176457730 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558454 S 1 1 0 "" KB1 nsv521574 5 176450403 176533637 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698190 S 2026 0 1 "" nsv521575 5 176547135 176641725 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698191 S 2026 1 0 "" dgv1878e1 5 176550923 176735050 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv8873,essv16970,essv14269,essv3051,essv1261,essv10759,essv1783,essv3233,essv22089,essv10245,essv17142,essv15816,essv11893,essv7617,essv20644,essv4443,essv17534,essv15138,essv16044,essv10340,essv16691,essv17251,essv12582,essv13604,essv15202,essv18831,essv9442,essv20918,esv245,essv12178,essv13897,essv8169,essv10685,essv23062,essv17296,essv10565,essv12515,essv15343,essv15478,essv18101,essv10860,essv20564,essv241,essv16434,essv14538,essv14757,essv12630,essv16268,essv23621,essv13563,essv11914,essv16848,essv14464,essv11764,essv8732 M 271 0 0 "" NA07056,NA11993,NA12006,NA12154,NA12751,NA12762,NA12801,NA12812,NA12892,NA18500,NA18501,NA18502,NA18503,NA18504,NA18505,NA18506,NA18508,NA18523,NA18545,NA18552,NA18854,NA18855,NA18856,NA18862,NA18871,NA18948,NA18974,NA18981,NA18995,NA18997,NA19092,NA19094,NA19098,NA19101,NA19127,NA19129,NA19139,NA19142,NA19144,NA19152,NA19159,NA19160,NA19161,NA19171,NA19194,NA19201,NA19202,NA19205,NA19206,NA19207,NA19208,NA19221,NA19223,NA19240 nsv525027 5 176569846 176601636 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701067 S 2026 1 0 "" nsv515632 5 176592176 176602093 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv684138,nssv664171 M 2026 2 0 "" nsv509103 5 176668358 176774182 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619431 S 4 1 0 "" NA10860 dgv733n27 5 176717118 176829018 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv462564,nsv462563 M 1557 0 2 "" 1780862021_A,HGDP00614 nsv5146 5 176721493 176739131 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8203 S 9 0 1 "" NA12156 nsv515805 5 176792454 176829018 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700617,nssv664832,nssv684839,nssv661523 M 2026 0 4 "" nsv329248 5 176811411 176811464 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347826 M 24 "" nsv329790 5 176827578 176827633 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv348368 M 24 "" nsv5147 5 176870802 176915624 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8204 S 9 0 1 "" NA12156 nsv5148 5 176879037 176911917 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv516 S 9 1 0 "" NA19240 nsv5149 5 176941040 176960647 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv517,nssv4879 M 9 2 0 "" NA19129,NA19240 nsv519647 5 177053303 177192735 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv680358,nssv657352 M 2026 0 2 "" esv33718 5 177068866 177101111 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100722 S 51 1 0 "" 21656 nsv442969 5 177090005 177131055 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv508389 5 177110393 177140581 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622540,nssv619968 M 4 0 2 "" NA15510,NA18994 nsv5150 5 177113005 177158524 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2558,nssv3406 M 9 0 2 "" NA12878,NA18555 nsv442970 5 177160157 177165211 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv509104 5 177160847 177230267 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623462,nssv620840,nssv619432 M 4 3 0 "" NA10860,NA15510,NA18994 nsv509105 5 177243954 177368462 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623463,nssv619433 M 4 2 0 "" NA10860,NA18994 nsv5151 5 177259221 177295919 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3407,nssv519 M 9 2 0 "" NA12878,NA19240 nsv521629 5 177297490 177328806 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698248 S 2026 0 1 "" nsv517302 5 177316388 177332854 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv669021,nssv656219,nssv693791,nssv664397,nssv661861,nssv669099,nssv679848,nssv681105,nssv654265,nssv676719,nssv668415,nssv691635,nssv663157,nssv681807,nssv669910,nssv686372,nssv692194,nssv670440,nssv700434,nssv659253,nssv657892,nssv676392,nssv689614,nssv651705,nssv661354 M 2026 0 25 "" nsv462566 5 177323655 177332854 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538699 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00574 nsv5152 5 177331295 177346285 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4880 S 9 1 0 "" NA19129 nsv327169 5 177338453 177338994 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv345747 M 24 "" nsv328207 5 177338593 177338708 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346785 M 24 "" nsv462567 5 177437627 177505533 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538700 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01363 nsv523636 5 177539025 177540801 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699436 S 2026 0 1 "" nsv527792 5 177591681 177607823 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704284 S 2026 0 1 "" nsv517167 5 177597948 177607823 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv656846,nssv662497,nssv682333,nssv682966,nssv690245,nssv655673,nssv653911,nssv662864,nssv680021,nssv683173,nssv677177,nssv687162,nssv676239,nssv668113,nssv660216,nssv669124 M 2026 0 16 "" dgv220n6 5 177599101 177599320 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv327582,nsv327806 M 24 "" nsv462568 5 177612334 177640033 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538701 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00546 nsv327226 5 177653827 177654064 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv345804 M 24 "" nsv327363 5 177653905 177654142 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv345941 M 24 "" nsv328155 5 177661383 177661479 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346733 M 24 "" nsv522162 5 177676378 177676986 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694137 S 2026 0 1 "" nsv509106 5 177707544 177762169 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619434 S 4 1 0 "" NA10860 nsv462569 5 177720121 177754271 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538702 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00402 nsv526499 5 177780715 177785188 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702808 S 2026 0 1 "" nsv441978 5 177781037 177785186 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv462570 5 177793060 177942751 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538703 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00945 nsv462571 5 177831256 177894466 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538704 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00479 nsv327487 5 177884627 177884686 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346065 M 24 "" nsv329434 5 177884627 177885046 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv348012 M 24 "" nsv527857 5 177896923 177899527 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704355 S 2026 0 1 "" nsv509107 5 177910798 177950760 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619435,nssv623464 M 4 2 0 "" NA10860,NA18994 nsv5153 5 177932661 177955808 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6042,nssv2559,nssv11116 M 9 3 0 "" NA12156,NA15510,NA18555 nsv280 5 177942564 177952843 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv280 S 1 1 0 "" NA15510 nsv5155 5 178007706 178065405 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2560,nssv3408,nssv8205 M 9 0 3 "" NA12156,NA12878,NA18555 nsv442971 5 178042581 178045769 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv327766 5 178059423 178059423 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346344 M 24 "" nsv509108 5 178103153 178166062 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619436 S 4 1 0 "" NA10860 nsv510008 5 178182891 178188891 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623993,nssv618225 M 4 0 2 "" CHM,NA18994 nsv462574 5 178202288 178245684 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538706 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00286 nsv5156 5 178279431 178299673 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4881 S 9 0 1 "" NA19129 nsv328942 5 178316281 178317013 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347520 M 24 "" nsv525129 5 178318191 178322843 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701197 S 2026 0 1 "" dgv364n21 5 178341891 178348543 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv527183,nsv516324 M 2026 0 15 "" nsv510009 5 178423265 178429265 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623994,nssv618226 M 4 0 2 "" CHM,NA18994 nsv509109 5 178534106 178608002 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619437 S 4 1 0 "" NA10860 nsv328622 5 178534330 178534397 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347200 M 24 "" nsv830558 5 178556997 178738210 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445157 S 95 0 1 "" nsv327470 5 178573765 178573914 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346048 M 24 "" nsv329044 5 178577421 178577421 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347622 M 24 "" nsv328920 5 178588859 178589006 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347498 M 24 "" dgv1879e1 5 178593872 178894478 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2754,essv768,essv3426 M 271 0 0 "" NA18956,NA19000 dgv1880e1 5 178593872 178970135 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv892,esv692 M 271 0 0 "" NA19000 dgv210e55 5 178653574 178894316 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv34254,esv34709 M 771 2 0 "" NA18956,NA19000 nsv433375 5 178661436 178868271 CNV Gain Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463256 S 9 1 0 Samples from several populations that are part of the HapMap project. "" NA18956 dgv734n27 5 178661436 178877013 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv462580,nsv462584,nsv462579,nsv462582,nsv462581 M 1557 5 0 "" HGDP00103,HGDP00791,HGDP01203,HGDP01228,HGDP01349 nsv441979 5 178662194 178863912 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv328326 5 178673131 178673212 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346904 M 24 "" nsv328359 5 178674846 178674846 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346937 M 24 "" nsv328099 5 178697591 178697591 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346677 M 24 "" nsv5157 5 178755968 178787453 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6043 S 9 0 1 "" NA12156 nsv7374 5 178767451 178862118 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2562 S 9 0 0 "" NA18555 nsv330173 5 178789180 178789351 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv348751 M 24 "" nsv522945 5 178814151 178831926 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698610 S 2026 0 1 "" nsv516854 5 178869328 178877013 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv654452,nssv691396 M 2026 0 2 "" nsv10784 5 178874878 178877345 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15741,nssv14971 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA18860,NA19240 nsv5158 5 178879497 178901083 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8206 S 9 0 1 "" NA12156 nsv5159 5 178937816 178968345 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2563 S 9 1 0 "" NA18555 nsv7375 5 178955375 179055752 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2565,nssv3409,nssv4883,nssv521,nssv9679,nssv6044,nssv9680,nssv10483,nssv10484,nssv11118,nssv11117,nssv6045,nssv9422,nssv9421,nssv520,nssv4882,nssv2564 M 9 0 0 "" NA12156,NA12878,NA15510,NA18507,NA18517,NA18555,NA18956,NA19129,NA19240 nsv281 5 178962158 179011175 OTHER Inversion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv281 S 1 0 0 "" NA15510 nsv830560 5 178971818 179108364 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445159,nssv1445158,nssv1445160,nssv1445161 M 95 0 4 "" nsv10785 5 178994223 178995174 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14463,nssv15583,nssv14286,nssv13577,nssv13682,nssv13875 M 31 0 6 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10863,NA18504,NA18537,NA18563 esv33798 5 179008319 179010856 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv94828 S 51 1 0 "" 21791 nsv282 5 179011676 179041161 OTHER Inversion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv282 S 1 0 0 "" NA15510 nsv10786 5 179016582 179017534 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14493,nssv13712,nssv13607,nssv13905,nssv15613,nssv14316 M 31 0 6 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10863,NA18504,NA18537,NA18563 nsv523946 5 179024747 179026714 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699793 S 2026 0 1 "" nsv5160 5 179035024 179069101 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2714 S 9 1 0 "" NA18555 nsv327725 5 179052940 179053073 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346303 M 24 "" nsv469579 5 179117437 179292797 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649693 M 265 0 1 Samples from several populations that are part of the HapMap project. "" nsv518964 5 179126204 179159892 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696431 S 2026 0 1 "" nsv327239 5 179231660 179231800 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv345817 M 24 "" nsv5161 5 179277706 179311695 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3411 S 9 1 0 "" NA12878 nsv830561 5 179298243 179469618 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445163 S 95 0 1 "" dgv1881e1 5 179467083 179662550 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv17005,esv10 M 271 0 0 "" NA19144 nsv830562 5 179487919 179555047 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445168,nssv1445167,nssv1445164,nssv1445166,nssv1445165,nssv1445175,nssv1445170,nssv1445169,nssv1445174,nssv1445171,nssv1445172 M 95 0 11 "" nsv525160 5 179530253 179544319 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701234 S 2026 0 1 "" nsv528625 5 179551567 179558236 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705255 S 2026 0 1 "" nsv830563 5 179650299 179831215 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445176 S 95 0 1 "" nsv10787 5 179650330 179664994 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14918,nssv13854,nssv13897 M 31 3 0 Samples from several populations that are part of the HapMap project. "" NA11830,NA12155,NA18975 nsv524857 5 179740232 179754051 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700860 S 2026 0 1 "" nsv509110 5 179784762 179870281 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619438 S 4 1 0 "" NA10860 nsv830564 5 179800000 179942702 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445177 S 95 1 0 "" nsv519380 5 179875001 179884180 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv655762,nssv700855,nssv684924 M 2026 0 3 "" nsv509111 5 179936985 180014470 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620841,nssv619439 M 4 2 0 "" NA10860,NA15510 nsv462585 5 179963737 180002458 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538712 S 1557 0 1 "" 1780862300_A nsv528843 5 179965898 180006854 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705520 S 2026 0 1 "" nsv528522 5 179974268 179996349 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705132 S 2026 0 1 "" nsv328308 5 179974922 179974979 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv346886 M 24 "" nsv522563 5 179984593 179996349 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705946 S 2026 0 1 "" nsv830565 5 180000239 180124249 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445178 S 95 0 1 "" dgv1882e1 5 180012576 180214082 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv772,essv20148,essv23278 M 271 0 0 "" NA07345 nsv525183 5 180014372 180026648 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701261 S 2026 0 1 "" nsv10788 5 180046872 180050739 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14326 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18552 nsv517459 5 180066222 180143262 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv681229,nssv652079,nssv663863,nssv661127,nssv694720,nssv684840,nssv659041,nssv691757,nssv692222,nssv687642,nssv697717,nssv688870,nssv663383,nssv667631,nssv688405,nssv675320,nssv661848 M 2026 17 0 "" nsv10789 5 180108099 180135305 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12881,nssv14284,nssv14949 M 31 3 0 Samples from several populations that are part of the HapMap project. "" NA10839,NA12740,NA12872 nsv818394 5 180108611 180122934 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415899,nssv1415958,nssv1415957 M 112 3 0 "" NA11995,NA12740,NA12750 nsv462587 5 180108611 180159279 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538713 S 1557 1 0 "" NINDS_96 nsv441980 5 180109948 180125790 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" esv33794 5 180110162 180115667 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93010,essv97663 M 51 2 0 "" 21863,22278 dgv6n29 5 180118058 180335838 CNV Loss Locke et al 2006 16826518 BAC_aCGH nsv469692,nsv469788 M 265 0 7 "" nsv830566 5 180196684 180386588 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445179 S 95 0 1 "" nsv330116 5 180229112 180231968 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv348694 M 24 "" nsv10790 5 180271275 180283767 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16064,nssv14346,nssv13772,nssv13616,nssv13637,nssv12709,nssv14979 M 31 4 3 Samples from several populations that are part of the HapMap project. "" NA07029,NA10863,NA12740,NA18517,NA18563,NA18572,NA19007 nsv10791 5 180305337 180364757 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13060,nssv15801,nssv14314,nssv13646,nssv14376,nssv16124,nssv14128,nssv14459,nssv13667,nssv14436,nssv13462,nssv12739,nssv14489,nssv14356,nssv13832,nssv13802,nssv13895,nssv13795,nssv16410,nssv15312,nssv15643,nssv15747,nssv14948 M 31 14 6 Samples from several populations that are part of the HapMap project. "" NA07029,NA10839,NA10847,NA10863,NA12155,NA12802,NA18502,NA18504,NA18517,NA18552,NA18563,NA18572,NA18860,NA18942,NA18980,NA19007,NA19132,NA19144,NA19173,NA19221 nsv442972 5 180311316 180350709 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv1883e1 5 180311387 180421549 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv10967,esv1049 M 271 0 0 "" NA19092 nsv508390 5 180311599 180366280 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619969 S 4 0 1 "" NA15510 nsv471440 5 180341824 180345858 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548281,nssv548283,nssv548282 M 3 "" esv32906 5 180342291 180342889 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101265,essv93842,essv96869,essv101097,essv94724,essv93055,essv95305,essv95853,essv96194,essv98075,essv96463,essv97787,essv100254,essv99469,essv94155 M 51 15 0 "" 21618,21634,21659,21693,21791,21863,21872,21911,22007,22259,22261,22278,22286,22335,22394 esv33360 5 180343398 180363121 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101531,essv98722,essv97528,essv101214,essv101232,essv93953,essv93797,essv100636,essv96852,essv96780,essv100940,essv100931,essv95180,essv98220,essv98199,essv94734,essv94811,essv94111,essv93985,essv97025,essv96878,essv95627,essv93145,essv93139,essv95343,essv95271,essv95411,essv97434,essv101711,essv95876,essv95839,essv94636,essv94492,essv98998,essv98978,essv93667,essv93763,essv96233,essv96229,essv96657,essv96716,essv97279,essv97123,essv98561,essv100034,essv99848,essv95952,essv93444,essv93500,essv99743,essv99632,essv94901,essv92548,essv92568,essv98115,essv96518,essv96519,essv99349,essv99158,essv97614,essv97669,essv100272,essv100285,essv100525,essv100349,essv100329,essv99549,essv98442,essv98402,essv96389,essv94251 M 51 43 0 "" 21603,21606,21616,21618,21634,21656,21659,21693,21721,21772,21791,21802,21817,21841,21863,21872,21879,21909,21911,21932,21938,21972,22007,22011,22075,22085,22086,22127,22128,22217,22231,22233,22259,22261,22275,22278,22286,22298,22300,22335,22352,22371,22394 nsv471441 5 180348507 180366332 CNV Deletion Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548284,nssv548285 M 3 "" nsv509112 5 180366280 180426561 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623465,nssv619440 M 4 2 0 "" NA10860,NA18994 nsv818395 5 180366486 180404429 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418275 S 112 1 0 "" NA19092 nsv462588 5 180366486 180446073 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538714 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00286 dgv735n27 5 180366486 180566460 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv462590,nsv462589 M 1557 2 0 "" HGDP00472,HGDP00473 nsv5162 5 180382084 180427338 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2716,nssv8207,nssv3412,nssv4884 M 9 4 0 "" NA12156,NA12878,NA18555,NA19129 nsv10792 5 180417894 180419628 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14523,nssv15009,nssv14178,nssv13862,nssv16154 M 31 5 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA12740,NA18517,NA18564 dgv365n21 5 180447258 180511356 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv523076,nsv524116 M 2026 0 2 "" nsv830567 5 180462971 180614928 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445180 S 95 0 1 "" nsv5163 5 180486005 180520184 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9887 S 9 0 1 "" NA18507 nsv328579 5 180494880 180494880 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347157 M 24 "" nsv328508 5 180501841 180502585 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347086 M 24 "" nsv520110 5 180507856 180540489 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697228 S 2026 1 0 "" nsv328916 5 180523346 180532903 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv347494 M 24 "" nsv517697 5 180540489 180623543 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv674572,nssv674573,nssv702615,nssv682664,nssv671379,nssv663548,nssv652878,nssv675239,nssv675238 M 2026 0 9 "" nsv462591 5 180555221 180623543 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538717 S 1557 0 1 "" 1780854339_A nsv509114 5 180674523 180696992 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620842,nssv619441,nssv623466 M 4 3 0 "" NA10860,NA15510,NA18994 nsv10793 5 180707313 180822483 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv12799,nssv14466,nssv13925,nssv14549,nssv13120,nssv14344,nssv13927,nssv13935,nssv16283,nssv14519 M 31 1 8 Samples from several populations that are part of the HapMap project. "" NA10839,NA10847,NA10863,NA11830,NA12802,NA18537,NA18572,NA18972,NA19173 nsv471442 5 180726894 180727830 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548287,nssv548286,nssv548288 M 3 "" nsv10795 5 180820892 180830091 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16313,nssv13676 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA18972,NA19007 nsv10796 6 1 71418 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15673,nssv14496,nssv13880,nssv12829,nssv14158,nssv14374,nssv15703,nssv15831,nssv13892,nssv15001,nssv13884,nssv15861,nssv16470,nssv13965,nssv13150,nssv15807 M 31 11 3 Samples from several populations that are part of the HapMap project. "" NA07029,NA10839,NA10863,NA12802,NA18504,NA18537,NA18572,NA18853,NA18860,NA18975,NA19132,NA19144,NA19221,NA19240 dgv1884e1 6 5001 91701 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv18193,essv8956,essv15517 M 271 0 0 "" NA12057,NA18505,NA19200 dgv1885e1 6 5001 352978 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv12587,essv10794,essv11123,essv17797,essv7833,essv10895,essv10681,essv11414,essv16782,essv2097 M 271 0 0 "" NA10831,NA18523,NA18558,NA18855,NA18857,NA18872,NA18949,NA19098,NA19209,NA19211 dgv1886e1 6 5001 598718 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv18836,essv1491,essv20236,essv14890,essv24268,essv6588,essv4450,essv18771,essv17573,essv14583,essv9173,essv15684,essv10057,essv12268,essv24075,essv18656,essv15996,essv13617,essv13725,essv10104,essv24910,essv12806,essv16098,essv20761,essv449,essv5466,essv18387,essv22905,essv2990,essv24721,essv16938,essv15887,essv287,essv21034,essv21178,essv20084,essv20908,essv19230,essv6705,essv19896,essv10413,essv14077,essv23865,essv9824,essv15016,essv6361,essv7604,essv12352,essv23684,essv17885,essv14509,essv12638,essv4077,essv12513,essv11959,essv5205,essv116 M 271 0 0 "" NA06991,NA06994,NA07048,NA10838,NA10856,NA10859,NA10863,NA11829,NA11830,NA12003,NA12144,NA12146,NA12234,NA12249,NA12751,NA12760,NA12762,NA12801,NA12813,NA12814,NA12874,NA18500,NA18501,NA18502,NA18522,NA18545,NA18552,NA18608,NA18609,NA18611,NA18621,NA18632,NA18635,NA18861,NA18863,NA18870,NA18912,NA18952,NA18968,NA18978,NA18980,NA18981,NA19093,NA19099,NA19100,NA19101,NA19119,NA19120,NA19127,NA19128,NA19130,NA19138,NA19144,NA19202,NA19207,NA19222,NA19223 esv581 6 5001 720274 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent + Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 "" dgv1887e1 6 89702 522691 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv8789,essv20555,essv16515,essv1409,essv11229,essv1937,essv23405,essv11025,essv5913,essv15600,essv8180,essv14294,essv24793,essv22313,essv21127,essv19545,essv1452,essv15039 M 271 0 0 "" NA06985,NA07056,NA10854,NA10860,NA12815,NA12864,NA18508,NA18550,NA18944,NA18959,NA19007,NA19116,NA19129,NA19137,NA19143,NA19194,NA19204,NA19210 nsv523938 6 110391 127550 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699784 S 2026 1 0 "" nsv525480 6 110391 171015 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701608 S 2026 1 0 "" nsv462592 6 110391 219847 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538718 S 1557 1 0 "" NINDS_15 esv2752087 6 110391 312109 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6981763,essv6981764,essv6981765,essv6981766,essv6981767 M 771 1 0 "" BEC_465 nsv10797 6 121016 126459 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14386,nssv16343 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18552,NA18972 nsv821644 6 127761 356478 CNV Gain Sebat_et_al_2004 15273396 ROMA Custom Nimblegen photoprint 85000 probe ROMA oligo array nssv1421412,nssv1421409,nssv1421406,nssv1421411,nssv1421404,nssv1421408,nssv1421403,nssv1421405,nssv1421410 M 31 9 0 "" nsv10798 6 142286 145147 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15891 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18860 dgv1888e1 6 143357 352978 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv22457,essv1879,essv10458,essv22534,essv8421,essv13572,essv1721,essv3861,essv7209,essv9014,essv20167,essv21783,essv2524,essv665,essv9361,essv2897,essv20382,essv2479,essv811,essv8299,essv20334,essv11873,essv5804,essv6736,essv21306,essv7110,essv16825,essv13790,essv24386,essv22150,essv15728,essv779,essv17047,essv14760,essv4740,essv16348,essv21832,essv13186,essv13059,essv24491,essv13857,essv17291,essv13478,essv16216,essv9913,essv15339,essv5719,essv15381,essv15272,essv16464,essv21517,essv9653,essv17606,essv18306,essv12768,essv10549,essv22841,essv3700,essv18918,essv12979,essv1181,essv23539,essv7744,essv8769,essv3109,essv22191 M 271 0 0 "" NA06993,NA07348,NA10830,NA10846,NA10855,NA10857,NA11832,NA11839,NA12004,NA12005,NA12044,NA12236,NA12239,NA12707,NA12753,NA12761,NA12802,NA12873,NA18515,NA18516,NA18537,NA18542,NA18547,NA18562,NA18566,NA18593,NA18620,NA18852,NA18853,NA18854,NA18856,NA18859,NA18862,NA18913,NA18914,NA18947,NA18951,NA18953,NA18956,NA18969,NA18973,NA18975,NA18976,NA18994,NA18997,NA18999,NA19003,NA19092,NA19094,NA19102,NA19103,NA19131,NA19132,NA19139,NA19145,NA19153,NA19159,NA19160,NA19161,NA19172,NA19192,NA19193,NA19203,NA19205,NA19221,NA19240 nsv462598 6 144199 153822 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538719 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00462 nsv516561 6 144199 153822 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv670213,nssv677990,nssv669177,nssv698837,nssv686210 M 2026 0 5 "" dgv1889e1 6 162334 356954 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1337,essv9509,essv12903,essv8515,essv2934,essv21571,essv25146,essv8053,essv21370,essv8572,essv14932,essv23306,essv19065,essv8701,essv22730,essv25029,essv24116,essv14915,essv11313,essv19794,essv6446,essv20542,essv9969,essv8001,essv13236,essv20824,essv1293,essv15163,essv19858,essv8965 M 271 0 0 "" NA07048,NA10855,NA10860,NA11830,NA11839,NA11995,NA12146,NA12234,NA12239,NA12264,NA12801,NA12864,NA18521,NA18522,NA18523,NA18592,NA18863,NA18973,NA18980,NA19007,NA19103,NA19129,NA19130,NA19131,NA19132,NA19139,NA19200,NA19204,NA19210,NA19221 nsv516659 6 165549 191178 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv669942,nssv704224,nssv672194 M 2026 3 0 "" nsv830568 6 177604 356249 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445197,nssv1445202,nssv1445194,nssv1445193,nssv1445201,nssv1445200,nssv1445203,nssv1445195,nssv1445192,nssv1445199,nssv1445198,nssv1445181,nssv1445183,nssv1445191,nssv1445182,nssv1445190,nssv1445186,nssv1445188,nssv1445187,nssv1445189 M 95 3 17 "" dgv1890e1 6 178750 295496 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv20989,essv7056,essv22020 M 271 0 0 "" NA10863,NA12815,NA18612 esv32812 6 181171 323927 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98880,essv97492,essv97467,essv101242,essv93860,essv100851,essv101080,essv95063,essv101366,essv94345,essv97891,essv95728,essv95494,essv93064,essv95311,essv95761,essv94520,essv92915,essv93750,essv96180,essv96739,essv98589,essv98645,essv99751,essv93472,essv99578,essv92526,essv97979,essv96562,essv97728,essv100504,essv100498,essv100379,essv96324,essv94169 M 51 0 32 "" 21606,21616,21618,21634,21656,21693,21721,21805,21808,21837,21841,21847,21863,21872,21911,21932,21939,21972,22007,22011,22085,22086,22128,22217,22233,22259,22261,22278,22298,22300,22371,22394 nsv462600 6 191178 256938 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538720 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00288 dgv1891e1 6 197145 342937 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv23274,essv8258,essv22800,essv14799,essv1052,essv2141,essv8681,essv6073,essv25115,essv10191,essv17357,essv14837,essv13352,essv3657,essv207,essv3503,essv2409,essv748,essv93,essv3834,essv20710,essv4936,essv17861,essv13973,essv18485,essv8667,essv12094,essv12960,essv7648,essv15905,essv20843,essv11345,essv6860,essv3611,essv1581,essv10499,essv11064,essv7924,essv18679,essv9276,essv4539,essv21624,essv970,essv13296,essv10701,essv17224,essv9835,essv10593,essv8989,essv16575,essv24207,essv13277,essv14264,essv11402,essv21646,essv2357,essv11372,essv9310,essv22286,essv5623,essv13824,essv20682,essv8493,essv17387,essv7961,essv11465,essv9521,essv11364,essv7897,essv13112,essv16596,essv25088,essv9541,essv14047,essv2938,essv18466,essv23165,essv8023,essv13389,essv16385,essv24017,essv14221,essv13489,essv13380,essv16613,essv2714,essv18010,essv6515,essv13952,essv22704,essv932,essv13222,essv14664,essv20483,essv18000,essv2417,essv7237,essv508,essv3432,essv8059,essv2124,essv6466,essv9568,essv21099,essv12870,essv8548,essv7986,essv15183,essv11614,essv15941,essv19738,essv5428,essv19826,essv17410 M 271 0 0 "" NA07345,NA07348,NA10831,NA10847,NA10854,NA10856,NA10857,NA10859,NA11829,NA11832,NA12004,NA12005,NA12056,NA12144,NA12156,NA12249,NA12752,NA12753,NA12760,NA12761,NA12762,NA12802,NA12814,NA12873,NA12878,NA18500,NA18501,NA18502,NA18503,NA18504,NA18508,NA18515,NA18516,NA18517,NA18537,NA18542,NA18558,NA18566,NA18572,NA18593,NA18621,NA18632,NA18635,NA18637,NA18852,NA18853,NA18854,NA18855,NA18856,NA18857,NA18858,NA18859,NA18860,NA18861,NA18862,NA18870,NA18871,NA18872,NA18912,NA18913,NA18914,NA18944,NA18949,NA18951,NA18952,NA18953,NA18956,NA18959,NA18969,NA18972,NA18975,NA18976,NA18978,NA18981,NA18991,NA18994,NA18995,NA18997,NA18999,NA19003,NA19005,NA19098,NA19099,NA19100,NA19101,NA19102,NA19119,NA19120,NA19127,NA19128,NA19137,NA19138,NA19143,NA19144,NA19145,NA19153,NA19159,NA19160,NA19161,NA19172,NA19192,NA19193,NA19194,NA19201,NA19202,NA19203,NA19205,NA19207,NA19208,NA19209,NA19211,NA19223,NA19239,NA19240 dgv736n27 6 198861 339293 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv462602,nsv462601,nsv462604,nsv462603 M 1557 0 4 "" 1780854568_A,HGDP00330,HGDP00701,HGDP01288 nsv10799 6 200920 329864 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16373,nssv13706,nssv16184,nssv13957,nssv14446,nssv13955,nssv16500,nssv14434,nssv13910,nssv14526,nssv15069,nssv12911,nssv13914,nssv12859,nssv15008,nssv14553,nssv13952,nssv13922,nssv15921,nssv14208,nssv15039,nssv14188,nssv15031,nssv15038,nssv14978,nssv14476,nssv15342,nssv15837,nssv13825,nssv13180,nssv13995,nssv15733 M 31 24 6 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10847,NA10863,NA11830,NA12155,NA12740,NA12802,NA12872,NA18502,NA18504,NA18517,NA18537,NA18552,NA18564,NA18572,NA18853,NA18860,NA18972,NA18975,NA18980,NA19007,NA19132,NA19144,NA19221,NA19240 nsv442973 6 202353 326149 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv1892e1 6 202461 248121 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv6805,essv19377 M 271 0 0 "" NA07019,NA18594 dgv1893e1 6 202461 267696 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv23296,essv4524 M 271 0 0 "" NA12006,NA18623 dgv1894e1 6 202461 295496 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv5702,essv731,essv18820,essv18045,essv2731 M 271 0 0 "" NA06993,NA12248,NA18550,NA18940,NA18965 dgv1895e1 6 214735 334630 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv8399,essv12934,essv14016,essv12062,essv12042,essv24946,essv7448,essv607,essv1644,essv19131 M 271 0 0 "" NA12044,NA12707,NA18582,NA18947,NA18961,NA19093,NA19094,NA19116,NA19222,NA19238 nsv524816 6 219847 256938 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700810 S 2026 0 1 "" nsv525541 6 229613 289878 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701678 S 2026 1 0 "" essv24628 6 248017 293482 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA10846 dgv1896e1 6 248017 329546 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2548,essv21905,essv19720,essv24172,essv21489,essv22606,essv18549,essv24555,essv24437,essv21495,essv24191,essv19032,essv5970,essv1716 M 271 0 0 "" NA07034,NA07056,NA10830,NA10838,NA11831,NA11993,NA12003,NA12154,NA12236,NA12751,NA12865,NA18552,NA18968,NA18974 essv23730 6 248017 356064 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12813 nsv5164 6 256655 277372 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2717 S 9 1 0 "" NA18555 nsv349805 6 271316 271376 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368383 M 24 "" nsv437476 6 282804 310074 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467357 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19194 nsv5166 6 291085 322837 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4887,nssv2566,nssv522,nssv3413 M 9 4 0 "" NA12878,NA18555,NA19129,NA19240 nsv509115 6 305763 361001 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620843,nssv619442,nssv623467 M 4 3 0 "" NA10860,NA15510,NA18994 dgv1897e1 6 345985 598718 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv554,essv4562,essv22038,essv6156,essv4759,essv5308,essv11728,essv19387,essv7067,essv24825,essv4405,essv5252,essv24994,essv3383,essv2076,essv2850,essv19021,essv4261 M 271 0 0 "" NA07000,NA10839,NA11840,NA12005,NA12154,NA18524,NA18532,NA18537,NA18563,NA18573,NA18603,NA18620,NA18624,NA18945,NA18949,NA18953,NA18998,NA19154 nsv830569 6 347743 518991 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445204 S 95 1 0 "" nsv462608 6 348799 387410 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538726 S 1557 0 1 "" 1780862093_A nsv5167 6 387174 431632 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2567 S 9 0 1 "" NA18555 nsv521248 6 461350 463078 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697867 S 2026 0 1 "" nsv528164 6 463059 474104 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704713 S 2026 0 1 "" nsv522827 6 473736 474104 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698477 S 2026 0 1 "" essv22330 6 513061 720274 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA06985 nsv462609 6 525362 778579 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538727 S 1557 1 0 "" 1788485589_A nsv5168 6 538773 552812 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8208 S 9 0 1 "" NA12156 nsv349892 6 546201 547160 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368470 M 24 "" nsv5169 6 597308 626630 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2568 S 9 0 1 "" NA18555 nsv348666 6 620505 620826 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367244 M 24 "" nsv349641 6 620648 620806 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368219 M 24 "" nsv830571 6 628778 822339 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445206,nssv1445205 M 95 0 2 "" nsv525316 6 709818 726077 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701424 S 2026 0 1 "" nsv515956 6 725441 726077 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv665462,nssv693707 M 2026 0 2 "" nsv522467 6 737837 740414 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705831 S 2026 0 1 "" dgv366n21 6 740414 741484 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv525069,nsv524415 M 2026 0 2 "" nsv525029 6 740414 743331 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701069 S 2026 0 1 "" nsv5170 6 754373 788302 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8209 S 9 1 0 "" NA12156 nsv5171 6 791776 821771 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv523,nssv4889,nssv4888 M 9 2 0 "" NA19129,NA19240 nsv350105 6 802730 802805 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368683 M 24 "" nsv516598 6 832977 833109 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv670790,nssv688915,nssv693882,nssv669458,nssv655124,nssv676880,nssv683349,nssv669609 M 2026 0 8 "" dgv1898e1 6 896385 953488 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv4315,esv1228 M 271 0 0 "" NA18564 nsv818396 6 924803 927165 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418072 S 112 0 1 "" NA11882 nsv5172 6 995229 1036073 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6047 S 9 0 1 "" NA12156 nsv830572 6 1014903 1194050 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445210,nssv1445211,nssv1445208,nssv1445209 M 95 2 2 "" nsv5173 6 1090154 1135643 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6048 S 9 0 1 "" NA12156 nsv5174 6 1134595 1166952 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6049 S 9 1 0 "" NA12156 nsv526426 6 1166088 1167588 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702728 S 2026 0 1 "" nsv349577 6 1179084 1179084 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368155 M 24 "" nsv349130 6 1386472 1386569 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367708 M 24 "" nsv348836 6 1479000 1479449 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367414 M 24 "" nsv462610 6 1522435 1543156 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538728 S 1557 0 1 "" 1780862414_A nsv350018 6 1597616 1597743 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368596 M 24 "" nsv349305 6 1627801 1628111 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367883 M 24 "" nsv462611 6 1633390 1647105 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538729 S 1557 0 1 "" 1782681263_A dgv367n21 6 1712458 1718296 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv528129,nsv518739 M 2026 0 2 "" nsv5175 6 1805745 1815128 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3414 S 9 1 0 "" NA12878 nsv516745 6 1941942 1946354 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv670597,nssv678953 M 2026 0 2 "" nsv527735 6 1973236 2042653 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704219 S 2026 0 1 "" nsv522608 6 1977258 2148887 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv706000 S 2026 1 0 "" nsv519587 6 2042653 2090446 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696937 S 2026 0 1 "" nsv830573 6 2065984 2208645 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445212 S 95 1 0 "" dgv368n21 6 2067453 2090446 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv527808,nsv524730 M 2026 0 2 "" nsv528906 6 2090446 2101261 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705591 S 2026 1 0 "" nsv830574 6 2411543 2612215 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445213 S 95 1 0 "" esv33977 6 2472402 2569090 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv94013 S 51 0 1 "" 21802 nsv462612 6 2523976 2549725 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538730 S 1557 0 1 "" 1780854444_A dgv1899e1 6 2561236 2577107 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1237,essv21654 M 271 0 0 "" NA12761 nsv526731 6 2568929 2570303 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703072 S 2026 0 1 "" nsv521282 6 2574150 2576607 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697884 S 2026 0 1 "" nsv521426 6 2606852 2611477 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698034 S 2026 0 1 "" nsv830575 6 2792609 2980915 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445214 S 95 0 1 "" nsv348854 6 2838425 2838425 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367432 M 24 "" nsv437477 6 2879640 2893964 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467358 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19120 nsv507311 6 2886007 2892007 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621828 S 4 1 0 "" NA10860 dgv1900e1 6 2934581 2961056 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1068,essv24090 M 271 0 0 "" NA07048 nsv5177 6 2943539 2976557 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3415 S 9 1 0 "" NA12878 nsv523441 6 2964653 2965688 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699197 S 2026 0 1 "" nsv522115 6 2974126 2989886 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694888 S 2026 1 0 "" nsv462614 6 3097404 3149820 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538731 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00094 nsv510010 6 3125970 3131970 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623995 S 4 0 1 "" NA18994 nsv524865 6 3636788 3642148 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700870 S 2026 0 1 "" esv32629 6 3661416 3663274 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93012,essv97423,essv95818,essv99681,essv97773,essv100115,essv100288 M 51 2 5 "" 21863,21879,21911,22217,22278,22286,22300 esv33970 6 3669393 3672879 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98737,essv100777,essv99844 M 51 3 0 "" 21606,21656,22086 nsv5178 6 3679682 3706544 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3416 S 9 1 0 "" NA12878 nsv349483 6 3974267 3974579 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368061 M 24 "" nsv349965 6 3995241 3995559 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368543 M 24 "" esv2422231 6 4045332 4178453 CNV Deletion Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161552 S 181 0 1 "" ND03627 esv2422457 6 4045332 4322395 CNV Deletion Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161473 S 181 0 1 "" ND04845 nsv441981 6 4115525 4119295 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv516282 6 4173048 4174687 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv667327,nssv691084 M 2026 0 2 "" nsv516402 6 4200707 4417586 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv668085,nssv672006,nssv659882,nssv686373 M 2026 0 4 "" dgv737n27 6 4200707 4426420 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv462619,nsv462620 M 1557 0 2 "" NINDS_147,NINDS_271 nsv830576 6 4392553 4555603 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445215 S 95 1 0 "" nsv525377 6 4514181 4517376 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701498 S 2026 0 1 "" nsv517135 6 4516783 4517376 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv653839,nssv680060,nssv672334,nssv672876,nssv680944 M 2026 0 5 "" nsv528627 6 4559057 4676339 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705257 S 2026 1 0 "" esv2422499 6 4690427 5018221 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161400 S 181 1 0 "" ND01582 nsv830577 6 4779566 4995543 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445216 S 95 0 1 "" nsv462622 6 4849379 5117008 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538735 S 1557 1 0 "" NINDS_125 nsv5179 6 5066823 5112026 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8210 S 9 0 1 "" NA12156 nsv522457 6 5190069 5205935 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705820 S 2026 0 1 "" nsv830578 6 5209085 5400569 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445217 S 95 1 0 "" nsv5180 6 5334196 5379353 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8211 S 9 0 1 "" NA12156 esv32935 6 5397917 5398866 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97011,essv93664 M 51 0 2 "" 21817,21972 nsv5181 6 5481920 5526594 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8213 S 9 0 1 "" NA12156 nsv516648 6 5502148 5504058 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv676433,nssv669871,nssv662546,nssv691857 M 2026 0 4 "" nsv507312 6 5504472 5510472 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622960,nssv620332 M 4 2 0 "" NA15510,NA18994 nsv517574 6 5505240 5505765 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv690462,nssv673736,nssv668221,nssv654108,nssv667160,nssv668158,nssv654484,nssv682359,nssv681319,nssv659229,nssv687458 M 2026 0 11 "" nsv5182 6 5645218 5678577 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8214 S 9 1 0 "" NA12156 nsv523206 6 5653305 5655256 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698926 S 2026 0 1 "" dgv369n21 6 5671230 5677819 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv522675,nsv523810 M 2026 0 2 "" nsv522836 6 5672249 5682121 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698487 S 2026 0 1 "" nsv518398 6 5722545 5732399 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694232 S 2026 0 1 "" nsv510011 6 5750618 5756618 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618227 S 4 0 1 "" CHM nsv5183 6 5766730 5811795 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8215 S 9 0 1 "" NA12156 nsv528693 6 5872558 5873288 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705338 S 2026 0 1 "" nsv10800 6 5890979 5893759 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13736 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19007 nsv507313 6 5993499 5999499 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617699 S 4 1 0 "" CHM nsv526207 6 6042535 6059381 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702470 S 2026 0 1 "" nsv521620 6 6059381 6074504 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698239 S 2026 0 1 "" nsv5184 6 6109017 6141963 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv524 S 9 1 0 "" NA19240 nsv520166 6 6200850 6201832 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv661336,nssv678828 M 2026 0 2 "" nsv515855 6 6377963 6393218 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv663658,nssv665025,nssv680177,nssv668686,nssv670723,nssv681347,nssv654715,nssv662952,nssv655157,nssv660850,nssv669762 M 2026 11 0 "" nsv521943 6 6465930 6476683 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694712 S 2026 1 0 "" nsv524314 6 6731466 6936303 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700216 S 2026 1 0 "" nsv528747 6 6748437 6753207 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705408 S 2026 0 1 "" nsv348614 6 6851716 6855663 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367192 M 24 "" nsv5185 6 6886307 6918735 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6050 S 9 1 0 "" NA12156 nsv5186 6 6922858 6967558 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8216 S 9 0 1 "" NA12156 nsv830579 6 6939549 6980065 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445233,nssv1445236,nssv1445243,nssv1445238,nssv1445241,nssv1445235,nssv1445239,nssv1445237,nssv1445245,nssv1445244,nssv1445246,nssv1445234,nssv1445222,nssv1445232,nssv1445227,nssv1445219,nssv1445221,nssv1445220,nssv1445223,nssv1445226,nssv1445242,nssv1445225,nssv1445224,nssv1445231,nssv1445230,nssv1445228 M 95 0 26 "" nsv349979 6 7001261 7005010 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368557 M 24 "" nsv818397 6 7170994 7192247 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417302 S 112 0 1 "" NA18608 nsv462623 6 7223328 7491403 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538736 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00542 dgv1901e1 6 7384069 7448784 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1046,essv5000 M 271 0 0 "" NA18571 esv35087 6 7384069 7454584 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6986888,essv6979556,essv6979555 M 771 1 0 "" NA18571 esv33195 6 7449371 7486143 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93668 S 51 0 1 "" 21972 nsv830580 6 7459074 7663575 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445247 S 95 1 0 "" nsv5189 6 7512348 7545333 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6051 S 9 1 0 "" NA12156 nsv462624 6 7525957 7611665 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538737 S 1557 0 1 "" 1780854485_A dgv370n21 6 7545426 7546435 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv519417,nsv519295 M 2026 0 3 "" nsv5190 6 7548683 7593784 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8217 S 9 0 1 "" NA12156 nsv5191 6 7551460 7585171 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2718 S 9 1 0 "" NA18555 nsv437957 6 7574576 7578276 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv468712,nssv468713 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA12865,NA12875 nsv830582 6 7652079 7834700 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445248 S 95 0 1 "" esv33781 6 7670764 7671019 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98529 S 51 0 1 "" 22085 esv33520 6 7671442 7674249 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99860 S 51 1 0 "" 22086 nsv525566 6 7679058 7680787 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701705 S 2026 0 1 "" nsv348521 6 7686614 7686749 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367099 M 24 "" nsv526828 6 7737583 7738304 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703185 S 2026 0 1 "" nsv522173 6 7737583 7741654 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694138 S 2026 0 1 "" nsv462625 6 7813865 7852138 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538738 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01023 nsv462626 6 7894805 7919866 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538739 S 1557 0 1 "" 1780862304_A dgv371n21 6 8111629 8116105 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv521654,nsv524165 M 2026 0 2 "" nsv830583 6 8151680 8342635 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445249 S 95 1 0 "" nsv349058 6 8172923 8173240 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367636 M 24 "" nsv830584 6 8233504 8406276 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445250 S 95 0 1 "" nsv5192 6 8263959 8318881 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8218,nssv8219 M 9 0 1 "" NA12156 nsv508391 6 8281013 8301702 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617515 S 4 0 1 "" CHM nsv5193 6 8296403 8330501 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8220 S 9 1 0 "" NA12156 nsv507314 6 8486316 8492316 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617700,nssv621829,nssv620333,nssv622961 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv516441 6 8500543 8501366 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv691073,nssv668430 M 2026 0 2 "" nsv507315 6 8798974 8804974 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622962 S 4 1 0 "" NA18994 nsv349558 6 8847225 8847225 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368136 M 24 "" nsv441982 6 8872510 8878097 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv372n21 6 8872893 8878656 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv516621,nsv525205 M 2026 0 13 "" nsv519164 6 8931481 9082280 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696646 S 2026 0 1 "" nsv462629 6 8948237 9085657 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538740 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00598 nsv348677 6 8951909 8953498 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367255 M 24 "" nsv348717 6 8959832 8959939 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367295 M 24 "" nsv507316 6 9122206 9128206 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622963 S 4 1 0 "" NA18994 nsv508392 6 9146106 9359633 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622541,nssv618783,nssv619970 M 4 0 3 "" NA10860,NA15510,NA18994 esv2752132 6 9372877 9436505 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6984363,essv6984362 M 771 1 0 "" BEC_694 nsv510012 6 9477641 9483641 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621276 S 4 0 1 "" NA15510 nsv510013 6 9527427 9533427 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618228 S 4 0 1 "" CHM nsv349434 6 9568364 9568700 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368012 M 24 "" nsv507317 6 9576247 9582247 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617701 S 4 1 0 "" CHM nsv526385 6 9632180 9638005 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702683 S 2026 1 0 "" nsv830585 6 9633625 9791611 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445252 S 95 1 0 "" nsv462630 6 9645597 9691338 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538741 S 1557 0 1 "" 1780846029_A nsv348706 6 9646117 9653682 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367284 M 24 "" nsv528881 6 9674658 9699383 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705561 S 2026 0 1 "" nsv349575 6 9677516 9677516 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368153 M 24 "" nsv525621 6 9698762 9873879 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701767 S 2026 0 1 "" nsv5194 6 9807766 9836549 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4890 S 9 1 0 "" NA19129 nsv515776 6 9873224 9873879 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv664744,nssv663093,nssv667097,nssv670179 M 2026 0 4 "" nsv526992 6 9930143 9958913 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703366 S 2026 1 0 "" nsv510014 6 9974931 9980931 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621277 S 4 0 1 "" NA15510 nsv516522 6 10170597 10177720 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv669257,nssv658513,nssv678650,nssv691398,nssv670256,nssv678154,nssv668857 M 2026 0 7 "" nsv441984 6 10175992 10177866 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv818398 6 10205002 10212993 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416936,nssv1416937 M 112 0 2 "" NA19138,NA19139 nsv520850 6 10301747 10308664 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv676343,nssv676763 M 2026 0 2 "" nsv522055 6 10316808 10320446 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694826 S 2026 0 1 "" dgv1902e1 6 10551783 10751118 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv658,essv19694 M 271 0 0 "" NA12264 nsv462631 6 10557244 10947745 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538742 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00542 esv34437 6 10565096 10649199 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6978801,essv6978800 M 771 0 1 "" NA12264 nsv436989 6 10574024 10620308 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv466870 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA10863 dgv1903e1 6 10574157 10664858 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv20982,essv23317 M 271 0 0 "" NA10863,NA12264 nsv10801 6 10574226 10639455 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14556 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA10863 dgv738n27 6 10575681 10636780 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv462634,nsv462633,nsv462632 M 1557 0 3 "" 1780862519_A,HGDP00795,HGDP00797 nsv818399 6 10577812 10636780 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417527,nssv1417516 M 112 0 2 "" NA10863,NA12264 dgv373n21 6 10577812 10650762 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv522231,nsv520598 M 2026 0 5 "" nsv437958 6 10579023 10636780 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv468716,nssv468714,nssv468717,nssv468715 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA10863,NA12264 esv33391 6 10580456 10637208 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98922,essv98923,essv100847,essv100901,essv96784,essv95144,essv94385,essv95881,essv98584,essv99791,essv99229,essv97639,essv100215 M 51 6 7 "" 21606,21656,21659,21721,21808,21911,22085,22086,22275,22278,22286 nsv436990 6 10620308 10638172 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv466871 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA10863 nsv5195 6 10623556 10657973 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2719 S 9 1 0 "" NA18555 nsv349183 6 10690595 10690595 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367761 M 24 "" nsv520853 6 10779750 10832546 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697650 S 2026 0 1 "" nsv5196 6 10918858 10953538 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv525 S 9 1 0 "" NA19240 nsv5197 6 10933516 10978606 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8222 S 9 0 1 "" NA12156 nsv519302 6 10987982 11000485 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv672641,nssv655246 M 2026 0 2 "" nsv348982 6 11014836 11016111 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367560 M 24 "" nsv519009 6 11033789 11046090 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696478 S 2026 0 1 "" nsv5198 6 11150895 11182640 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10486 S 9 1 0 "" NA18956 nsv818401 6 11182177 11191962 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417147 S 112 0 1 "" NA18542 nsv441985 6 11182288 11185184 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv507318 6 11615469 11621469 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621830 S 4 1 0 "" NA10860 nsv5200 6 11689885 11716915 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8223 S 9 1 0 "" NA12156 dgv1904e1 6 11787739 11930337 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv378,essv13441 M 271 0 0 "" NA19192 nsv522039 6 11877266 11879245 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694809 S 2026 1 0 "" nsv5201 6 11941952 11987222 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8224 S 9 0 1 "" NA12156 dgv221n6 6 12011423 12011750 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv348565,nsv350080 M 24 "" nsv519516 6 12046658 12050357 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696895 S 2026 0 1 "" nsv509116 6 12212986 12246507 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618049 S 4 1 0 "" CHM nsv830586 6 12238062 12403320 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445253 S 95 1 0 "" nsv508394 6 12393450 12494731 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618784 S 4 0 1 "" NA10860 nsv509117 6 12393450 12494731 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620844 S 4 1 0 "" NA15510 nsv525684 6 12409448 12415250 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701842 S 2026 0 1 "" nsv528681 6 12448020 12470205 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705323 S 2026 0 1 "" nsv349011 6 12481525 12481607 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367589 M 24 "" nsv510015 6 12557277 12563277 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622106 S 4 0 1 "" NA10860 nsv462638 6 12677217 12759235 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538746 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00959 nsv348933 6 12772175 12772496 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367511 M 24 "" dgv84n68 6 12877647 13080479 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH nsv830587,nsv830588 M 95 0 2 "" nsv5202 6 13024215 13066503 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8225 S 9 0 1 "" NA12156 nsv5203 6 13230862 13254490 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv526,nssv2720 M 9 2 0 "" NA18555,NA19240 nsv509118 6 13233806 13234892 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623468 S 4 1 0 "" NA18994 nsv511118 6 13233806 13274842 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621587 S 4 0 0 "" NA15510 nsv507319 6 13251030 13257030 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622964,nssv621831 M 4 2 0 "" NA10860,NA18994 nsv5204 6 13285391 13311798 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10487,nssv2570 M 9 2 0 "" NA18555,NA18956 nsv462640 6 13534518 13627413 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538747 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01302 nsv520921 6 13582041 13587095 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv691238,nssv677705 M 2026 0 2 "" nsv5205 6 13601018 13615424 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6052,nssv3418,nssv4891 M 9 3 0 "" NA12156,NA12878,NA19129 nsv509119 6 13603363 13632485 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623469,nssv620845,nssv619444 M 4 3 0 "" NA10860,NA15510,NA18994 nsv5206 6 13626664 13635187 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2571 S 9 1 0 "" NA18555 nsv349842 6 13870206 13870206 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368420 M 24 "" nsv349719 6 13913026 13917938 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368297 M 24 "" nsv527420 6 14172252 14196281 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703858 S 2026 0 1 "" nsv830589 6 14298260 14458529 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445256 S 95 1 0 "" nsv462641 6 14311851 14872962 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538748 S 1557 0 1 "" 1780862226_A nsv830590 6 14361073 14551112 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445257 S 95 0 1 "" nsv830591 6 14387182 14585872 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445258 S 95 1 0 "" nsv526218 6 14387330 14392006 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702482 S 2026 0 1 "" nsv519149 6 14725570 14726116 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696626 S 2026 0 1 "" nsv510016 6 14850281 14856281 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623996,nssv621278,nssv622107 M 4 0 3 "" NA10860,NA15510,NA18994 nsv830593 6 15157615 15352169 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445259 S 95 0 1 "" nsv830594 6 15279137 15369275 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445260 S 95 0 1 "" nsv509120 6 15400817 15487671 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620846 S 4 1 0 "" NA15510 nsv522265 6 15602156 15654192 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695045 S 2026 0 1 "" dgv1905e1 6 15776846 15833457 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv13323,esv1135 M 271 0 0 "" NA18507 nsv433377 6 15794204 15821738 CNV Gain Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463258 S 9 1 0 Samples from several populations that are part of the HapMap project. "" NA18507 esv33801 6 15804872 15818499 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv95448 S 51 0 1 "" 21847 nsv518098 6 15872654 15879967 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694200 S 2026 0 1 "" nsv5207 6 15967121 15999254 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3419 S 9 1 0 "" NA12878 nsv348406 6 15992687 15992846 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv366984 M 24 "" nsv5208 6 16105407 16132464 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv528 S 9 1 0 "" NA19240 nsv462642 6 16127094 16164005 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538749 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01336 nsv5209 6 16226103 16260009 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4892 S 9 1 0 "" NA19129 nsv521185 6 16303287 16347758 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697833 S 2026 0 1 "" esv32789 6 16328780 16330855 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100666,essv97883,essv95478,essv100107,essv93226 M 51 0 5 "" 21656,21837,21847,22086,22170 nsv521653 6 16383679 16400739 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698271 S 2026 0 1 "" nsv5211 6 16431865 16463445 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4893 S 9 1 0 "" NA19129 nsv462643 6 16500138 16508069 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538750 S 1557 1 0 "" 1782681236_A nsv5212 6 16584774 16616985 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10488 S 9 1 0 "" NA18956 dgv1906e1 6 16981250 17020517 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv4725,esv24 M 271 0 0 "" NA18620 nsv830595 6 17007348 17207711 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445261 S 95 1 0 "" nsv349766 6 17118767 17118767 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368344 M 24 "" nsv510017 6 17185404 17191404 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623997,nssv618229 M 4 0 2 "" CHM,NA18994 nsv5213 6 17227410 17271785 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2572 S 9 0 1 "" NA18555 nsv350167 6 17490936 17490985 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368745 M 24 "" nsv349497 6 17514624 17516869 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368075 M 24 "" nsv5214 6 17531492 17587753 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4894,nssv9683 M 9 0 2 "" NA18507,NA19129 nsv516012 6 17568155 17985203 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv670663,nssv665717,nssv658310,nssv703532,nssv658078,nssv705642 M 2026 5 1 "" nsv830596 6 17706001 17876021 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445267,nssv1445268,nssv1445263,nssv1445266,nssv1445269,nssv1445265,nssv1445264 M 95 7 0 "" nsv830597 6 18061918 18231811 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445270 S 95 0 1 "" nsv5215 6 18140324 18171896 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv11120 S 9 1 0 "" NA15510 nsv5216 6 18144601 18189463 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8226 S 9 0 1 "" NA12156 nsv349085 6 18435678 18435754 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367663 M 24 "" nsv522216 6 18623955 18630299 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694994 S 2026 1 0 "" nsv524331 6 18623955 18630299 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700237 S 2026 0 1 "" nsv830598 6 18779741 18954466 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445272,nssv1445271 M 95 0 2 "" nsv462646 6 18807121 19224418 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538751 S 1557 1 0 "" 1780862347_A nsv526639 6 18807121 19224418 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702961 S 2026 1 0 "" nsv525261 6 18809568 18825173 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701360 S 2026 0 1 "" nsv462647 6 18950538 19002215 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538752 S 1557 0 1 "" NINDS_91 nsv462648 6 19022603 19087890 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538753 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01348 nsv7377 6 19042463 19070461 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9684 S 9 0 0 "" NA18507 nsv462649 6 19083050 19110272 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538754 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01414 nsv821645 6 19091937 19126876 CNV Loss Sebat_et_al_2004 15273396 ROMA Custom Nimblegen photoprint 85000 probe ROMA oligo array nssv1421413 S 31 0 1 "" nsv5217 6 19141383 19161962 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2573,nssv6053 M 9 0 2 "" NA12156,NA18555 nsv436992 6 19146111 19166671 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv466873 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA12802 nsv10802 6 19148813 19159465 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13982,nssv13210,nssv14238,nssv12941,nssv16403 M 31 0 5 Samples from several populations that are part of the HapMap project. "" NA07029,NA12802,NA12872,NA18564,NA18972 nsv437960 6 19151529 19155942 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv468720,nssv468719,nssv468722,nssv468721 M 269 0 4 Samples from several populations that are part of the HapMap project. "" NA10859,NA12802,NA12815,NA12872 nsv5218 6 19153169 19168489 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4895 S 9 1 0 "" NA19129 nsv517267 6 19154709 19156752 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv659206,nssv654267,nssv691272,nssv667924,nssv653315,nssv668188,nssv689772,nssv660418,nssv681174,nssv662283,nssv689803,nssv688112,nssv680562,nssv662645,nssv688643,nssv694000,nssv674757,nssv685058,nssv670742,nssv656867,nssv659059,nssv666725,nssv668568,nssv666906,nssv669073,nssv664415,nssv654166,nssv663052,nssv670825,nssv683325,nssv670257,nssv692103,nssv674105,nssv662059,nssv675953,nssv659255 M 2026 0 36 "" nsv520164 6 19336917 19353277 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv680059,nssv661335,nssv680160,nssv690923 M 2026 0 4 "" nsv830599 6 19751572 19931470 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445274 S 95 1 0 "" nsv508395 6 19851410 19905480 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622542 S 4 0 1 "" NA18994 nsv516824 6 19856027 19869194 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv671198,nssv689433 M 2026 0 2 "" nsv5219 6 19862959 19887682 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv529,nssv2574,nssv10489,nssv4896 M 9 0 4 "" NA18555,NA18956,NA19129,NA19240 nsv5220 6 19872054 19904866 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6054 S 9 1 0 "" NA12156 nsv462653 6 19884638 19920423 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538755 S 1557 0 1 "" NINDS_125 nsv521746 6 19924156 19926686 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694511 S 2026 0 1 "" nsv441986 6 19924839 19927883 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv349813 6 20013541 20013706 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368391 M 24 "" nsv5222 6 20128926 20156612 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv530 S 9 1 0 "" NA19240 nsv350077 6 20301234 20301814 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368655 M 24 "" nsv348939 6 20873358 20873677 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367517 M 24 "" nsv527696 6 21044393 21079964 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704174 S 2026 0 1 "" nsv510018 6 21153637 21159637 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622108,nssv623998 M 4 0 2 "" NA10860,NA18994 nsv519141 6 21192409 21194026 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696619 S 2026 0 1 "" nsv524793 6 21216093 21216170 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700785 S 2026 0 1 "" nsv528152 6 21228407 21228748 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704700 S 2026 1 0 "" nsv524280 6 21228748 21229134 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700179 S 2026 0 1 "" nsv830600 6 21241107 21420334 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445275 S 95 0 1 "" nsv521200 6 21268426 21284103 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697841 S 2026 0 1 "" nsv462654 6 21404382 21430762 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538756 S 1557 0 1 "" 1780854326_A nsv830601 6 21429841 21617777 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445276 S 95 0 1 "" nsv441988 6 21609666 21611713 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv519363 6 21710531 21766860 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv660480,nssv661477,nssv686342,nssv680309,nssv686028,nssv672668,nssv655654,nssv687783,nssv679132,nssv691826 M 2026 0 10 "" nsv516009 6 21836296 21848861 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv665698,nssv667037 M 2026 0 2 "" nsv348739 6 21875599 21879015 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367317 M 24 "" nsv818402 6 21935083 21939271 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418372 S 112 0 1 "" NA12239 nsv516909 6 21935083 21940525 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv690292,nssv657599,nssv658180,nssv654874,nssv657823,nssv657512 M 2026 0 6 "" nsv525875 6 22009637 22017731 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702075 S 2026 0 1 "" nsv830602 6 22081828 22273386 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445277 S 95 1 0 "" nsv437478 6 22095406 22126973 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467359 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19139 nsv349514 6 22099392 22102631 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368092 M 24 "" dgv374n21 6 22144846 22152995 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv523982,nsv520732 M 2026 0 2 "" nsv348606 6 22155222 22155534 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367184 M 24 "" nsv510019 6 22158549 22164549 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621279 S 4 0 1 "" NA15510 nsv349883 6 22160749 22161706 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368461 M 24 "" nsv5223 6 22259893 22301363 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9685,nssv531,nssv4897 M 9 0 3 "" NA18507,NA19129,NA19240 nsv5224 6 22271131 22306008 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3420 S 9 1 0 "" NA12878 nsv348766 6 22335452 22335733 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367344 M 24 "" nsv830604 6 22343537 22503002 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445278 S 95 0 1 "" nsv349275 6 22609786 22609884 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367853 M 24 "" nsv830605 6 22614942 22780273 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445279 S 95 1 0 "" nsv349694 6 22890648 22890971 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368272 M 24 "" nsv517158 6 22894992 22897992 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv653892,nssv669583,nssv684427 M 2026 0 3 "" nsv462655 6 22946963 22974171 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538757 S 1557 0 1 "" NINDS_127 nsv349198 6 23004607 23004799 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367776 M 24 "" nsv830606 6 23071105 23292972 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445280 S 95 1 0 "" nsv523464 6 23127204 23133804 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699222 S 2026 0 1 "" nsv818403 6 23142869 23147814 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417647 S 112 0 1 "" NA18992 nsv515600 6 23268267 23271046 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv658901,nssv680378,nssv669761,nssv686115,nssv674421,nssv689295,nssv664047 M 2026 0 7 "" nsv5225 6 23351451 23380919 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv11121 S 9 1 0 "" NA15510 dgv222n6 6 23408342 23408677 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv348702,nsv349370 M 24 "" nsv830607 6 23410304 23554476 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445281 S 95 1 0 "" nsv5226 6 23531645 23565334 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv532 S 9 1 0 "" NA19240 esv2422291 6 23574059 23708438 CNV Deletion Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161272 S 181 0 1 "" ND03123 nsv830608 6 23666634 23752384 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445282,nssv1445283,nssv1445288,nssv1445285,nssv1445287,nssv1445286 M 95 1 5 "" nsv462656 6 23737260 23829011 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538758 S 1557 0 1 "" NINDS_136 nsv527726 6 23870370 23883574 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704207 S 2026 0 1 "" nsv519462 6 23952741 23959884 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694330 S 2026 0 1 "" esv33895 6 23957389 23957524 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97150 S 51 1 0 "" 22075 nsv524433 6 23966911 24086586 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700360 S 2026 0 1 "" nsv462657 6 23987919 24004566 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538759 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01157 esv33446 6 23999290 24024790 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100826 S 51 0 1 "" 21656 nsv462658 6 24013218 24037216 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538760 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01300 nsv462659 6 24026157 24053250 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538761 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00576 nsv462660 6 24160505 24188349 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538762 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01341 esv32656 6 24433549 24435493 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv95135,essv97381,essv98981,essv92814,essv93736,essv96613,essv95001,essv97682,essv100610 M 51 0 9 "" 21721,21879,21938,21944,21972,22011,22231,22278,22298 esv33852 6 24439688 24442459 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99918 S 51 0 1 "" 22086 esv33412 6 24444782 24444946 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101583 S 51 0 1 "" 21603 nsv519552 6 24559235 24632683 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696916 S 2026 1 0 "" nsv515988 6 24562658 24571440 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv665598,nssv657851,nssv660217,nssv696331 M 2026 0 4 "" nsv525943 6 24584673 24587824 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702149 S 2026 0 1 "" nsv515732 6 24813814 24817809 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv679447,nssv664618 M 2026 0 2 "" nsv830609 6 24820065 25004626 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445289 S 95 1 0 "" nsv349398 6 24843174 24844658 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367976 M 24 "" nsv5227 6 24882128 24931991 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9686,nssv6055,nssv2575,nssv10490,nssv3421 M 9 0 5 "" NA12156,NA12878,NA18507,NA18555,NA18956 nsv508396 6 24887627 24954288 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618785,nssv622543,nssv619971 M 4 0 3 "" NA10860,NA15510,NA18994 nsv830610 6 25059720 25232218 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445290 S 95 0 1 "" nsv510020 6 25145000 25151000 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622109,nssv623999,nssv618230 M 4 0 3 "" CHM,NA10860,NA18994 nsv830611 6 25147353 25307091 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445291,nssv1445292,nssv1445293 M 95 0 3 "" nsv509121 6 25166741 25180038 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620847 S 4 1 0 "" NA15510 nsv5228 6 25177110 25178723 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv533 S 9 1 0 "" NA19240 nsv462662 6 25192697 25273465 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538764 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00910 nsv349859 6 25199965 25199965 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368437 M 24 "" nsv462663 6 25264176 25342863 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538765 S 1557 0 1 "" 1780862224_A nsv830612 6 25450387 25617737 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445294 S 95 1 0 "" nsv349286 6 25637865 25638005 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367864 M 24 "" nsv526061 6 25816693 25833460 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702299 S 2026 0 1 "" nsv5229 6 26020130 26064537 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2576 S 9 0 1 "" NA18555 nsv509122 6 26115785 26172322 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623471 S 4 1 0 "" NA18994 dgv375n21 6 26256290 26319347 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv518431,nsv526456 M 2026 0 2 "" esv33291 6 26378693 26378845 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv96439 S 51 1 0 "" 22261 nsv525347 6 26421327 26430964 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701466 S 2026 0 1 "" nsv5230 6 26429572 26469510 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv534,nssv9888 M 9 0 2 "" NA18507,NA19240 nsv527328 6 26480765 26487516 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703753 S 2026 0 1 "" nsv528172 6 26538960 26571639 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704721 S 2026 0 1 "" nsv349568 6 26622407 26622407 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368146 M 24 "" nsv830613 6 26745083 26897961 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445297 S 95 1 0 "" nsv471635 6 26751772 26923946 CNV Gain Sharp et al 2005 15918152 BAC_aCGH,FISH Eichler Segmental Duplication BAC array nssv550252,nssv550249,nssv550247,nssv550246,nssv550250,nssv550248,nssv550251 M 48 7 0 "" NA10470,NA10492,NA15732,NA17015,NA17016,NA17017,NA17020 nsv5231 6 26751871 26868462 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6056,nssv9889,nssv4898,nssv535 M 9 0 4 "" NA12156,NA18507,NA19129,NA19240 nsv349022 6 26757910 26758219 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367600 M 24 "" nsv10803 6 26764639 26767186 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14025,nssv12889 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18537,NA18572 nsv7378 6 26781648 26946836 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9687,nssv9689,nssv9688,nssv537,nssv6057,nssv536,nssv10492,nssv6058,nssv3423,nssv9423,nssv538,nssv11122,nssv2578,nssv9424,nssv10491,nssv4899,nssv3422,nssv2579,nssv2577 M 9 0 0 "" NA12156,NA12878,NA15510,NA18507,NA18517,NA18555,NA18956,NA19129,NA19240 nsv350143 6 26785006 26794104 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368721 M 24 "" dgv1907e1 6 26801198 27203693 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv552,essv22224 M 271 0 0 "" NA12044 essv17380 6 26806459 27004868 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18855 esv33111 6 26811045 27054910 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101606,essv96843,essv95109,essv94773,essv97884,essv95645,essv95457,essv95289,essv97307,essv101763,essv94531,essv92839,essv92822,essv93639,essv96661,essv98574,essv99984,essv93291,essv99748,essv92523,essv96471,essv99166,essv97653,essv100462,essv100303,essv99382,essv94208 M 51 0 27 "" 21603,21659,21721,21791,21837,21841,21847,21872,21879,21909,21932,21939,21944,21972,22011,22085,22086,22170,22217,22233,22261,22275,22278,22298,22300,22335,22394 nsv283 6 26816389 26911451 OTHER Inversion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv283 S 1 0 0 "" NA15510 nsv10804 6 26826983 26891099 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16244,nssv16463,nssv12971,nssv15372,nssv15951,nssv13796,nssv13697,nssv15793,nssv13826,nssv16530,nssv14586,nssv15061,nssv13240,nssv13944,nssv14506,nssv16214,nssv14218 M 31 8 7 Samples from several populations that are part of the HapMap project. "" NA10863,NA12802,NA12872,NA18502,NA18504,NA18517,NA18552,NA18563,NA18860,NA18972,NA18975,NA19007,NA19144,NA19221,NA19240 nsv511119 6 26833790 26909260 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618649,nssv624303,nssv622373 M 4 0 0 "" CHM,NA10860,NA18994 nsv442975 6 26845011 26876548 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv5233 6 26868454 26882769 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4900 S 9 1 0 "" NA19129 nsv509123 6 26894154 26909260 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620848 S 4 1 0 "" NA15510 nsv830615 6 26897962 27030200 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445298,nssv1445301,nssv1445302,nssv1445300,nssv1445299 M 95 5 0 "" dgv7n29 6 26949062 27123577 CNV Gain Locke et al 2006 16826518 BAC_aCGH nsv469675,nsv469610 M 265 45 0 "" nsv471636 6 26949063 27146154 CNV Gain+Loss Sharp et al 2005 15918152 BAC_aCGH,FISH Eichler Segmental Duplication BAC array nssv549615,nssv549576,nssv549613,nssv549616,nssv650996,nssv549574,nssv549611,nssv549614,nssv549571,nssv549570,nssv549573,nssv549612,nssv549572,nssv549575 M 48 7 2 "" JK1058,JK1061,JK776,NA10470,NA10496,NA15725,NA15726,NA15729,NA17017 nsv10806 6 26958921 27079343 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15402,nssv13270,nssv16334,nssv15159,nssv16493,nssv14616,nssv14646,nssv15823,nssv15068,nssv13985,nssv14055,nssv14278,nssv16304,nssv14536,nssv14248,nssv15129,nssv16274,nssv14012 M 31 7 9 Samples from several populations that are part of the HapMap project. "" NA07029,NA10847,NA10863,NA12155,NA12740,NA12802,NA18502,NA18504,NA18517,NA18537,NA18552,NA18972,NA19144 nsv830616 6 26967076 27138455 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445304,nssv1445303,nssv1445305,nssv1445306,nssv1445308 M 95 5 0 "" nsv469625 6 27001718 27146154 CNV Gain Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649550 M 265 17 0 Samples from several populations that are part of the HapMap project. "" essv13913 6 27033029 27203693 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18854 esv33439 6 27184702 27186399 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv95571 S 51 0 1 "" 21841 nsv526241 6 27337244 27338794 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702510 S 2026 0 1 "" nsv349023 6 27346223 27346294 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367601 M 24 "" nsv348574 6 27421796 27421796 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367152 M 24 "" nsv5234 6 27453596 27486004 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3424 S 9 1 0 "" NA12878 nsv517557 6 27464506 27464904 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv652352,nssv672642 M 2026 0 2 "" nsv5235 6 27466477 27512053 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6059 S 9 0 1 "" NA12156 nsv830617 6 27532748 27706574 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445309 S 95 0 1 "" nsv830618 6 27701253 27897584 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445310 S 95 1 0 "" nsv525669 6 27731490 27765626 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701826 S 2026 1 0 "" nsv518945 6 27742619 27775992 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694291 S 2026 1 0 "" nsv348612 6 27750910 27751069 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367190 M 24 "" nsv437481 6 27763075 27791551 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467362 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19161 nsv437482 6 27778896 27791551 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467363 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18521 nsv437961 6 27783269 27784773 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv468725,nssv468723,nssv468726,nssv468724 M 269 0 4 Samples from several populations that are part of the HapMap project. "" NA18521,NA18522,NA19160,NA19161 nsv830619 6 27980281 28170523 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445311 S 95 0 1 "" nsv527562 6 27994809 28003192 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704023 S 2026 0 1 "" nsv5236 6 28055657 28073548 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4901 S 9 1 0 "" NA19129 nsv525713 6 28126923 28129568 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701875 S 2026 0 1 "" esv33436 6 28152325 28157022 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98721,essv93615,essv100005 M 51 3 0 "" 21606,21972,22086 nsv349384 6 28183865 28188745 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367962 M 24 "" nsv507320 6 28249266 28255266 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622965,nssv621832,nssv620335 M 4 3 0 "" NA10860,NA15510,NA18994 nsv830620 6 28281976 28456012 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445312,nssv1445314,nssv1445313 M 95 0 3 "" nsv527115 6 28293705 28294533 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703497 S 2026 0 1 "" nsv348491 6 28298187 28298523 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367069 M 24 "" nsv349714 6 28415601 28415701 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368292 M 24 "" nsv349967 6 28424609 28424685 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368545 M 24 "" nsv5237 6 28524527 28557977 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4902 S 9 1 0 "" NA19129 nsv830621 6 28581930 28783688 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445315 S 95 1 0 "" nsv462667 6 28941204 29001906 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538766 S 1557 1 0 "" NINDS_178 nsv510021 6 28967144 28973144 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622110 S 4 0 1 "" NA10860 nsv830622 6 28969646 29123783 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445316 S 95 1 0 "" nsv5238 6 28977339 29011880 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv539 S 9 1 0 "" NA19240 nsv349494 6 29080201 29080305 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368072 M 24 "" nsv830623 6 29097686 29279364 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445317 S 95 1 0 "" esv33399 6 29165099 29165342 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99329 S 51 1 0 "" 22275 esv33902 6 29175162 29175384 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97554,essv98281 M 51 0 2 "" 21616,21772 nsv462670 6 29207558 29257540 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538767 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00581 nsv517415 6 29207558 29257540 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv686343,nssv664634,nssv661918,nssv682052,nssv651957 M 2026 0 5 "" esv32739 6 29211040 29211111 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97970,essv93134,essv97335,essv99045,essv93563,essv96566,essv99311,essv94255 M 51 0 8 "" 21837,21863,21879,21938,22128,22261,22275,22394 nsv526153 6 29212914 29292639 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702412 S 2026 0 1 "" nsv523119 6 29287216 29292639 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698819 S 2026 1 0 "" nsv830624 6 29382504 29553544 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445319 S 95 0 1 "" nsv520169 6 29410009 29432578 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697260 S 2026 1 0 "" nsv519453 6 29451334 29459852 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695882,nssv702300,nssv686457,nssv656239,nssv703903 M 2026 2 3 "" nsv348961 6 29471890 29472032 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367539 M 24 "" dgv1908e1 6 29577080 29780644 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv10262,esv171 M 271 0 0 "" NA18506 nsv10807 6 29606307 29609318 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14676,nssv13492 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA10863,NA18942 essv18215 6 29619625 29712971 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12057 nsv5239 6 29635386 29674425 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9890 S 9 0 1 "" NA18507 dgv376n21 6 29652804 29658597 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv522325,nsv527592 M 2026 0 2 "" nsv519288 6 29653694 29667274 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696770 S 2026 0 1 "" nsv462671 6 29674821 29696125 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538768 S 1557 0 1 "" NINDS_65 nsv528285 6 29674821 29696125 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704855 S 2026 1 0 "" nsv526617 6 29679524 29684372 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702937 S 2026 0 1 "" nsv527037 6 29723801 29732091 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703413 S 2026 0 1 "" nsv10808 6 29756030 29761162 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15091 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19240 nsv508397 6 29771111 29869427 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622544 S 4 0 1 "" NA18994 nsv519888 6 29776516 29781462 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv689592,nssv683789,nssv659313 M 2026 0 3 "" nsv462673 6 29797569 29808162 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538770 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00891 nsv10809 6 29800552 29902098 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13727,nssv15151,nssv13940 M 31 3 0 Samples from several populations that are part of the HapMap project. "" NA18563,NA18853,NA19240 nsv507321 6 29806700 29812700 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620336,nssv621833 M 4 2 0 "" NA10860,NA15510 nsv527368 6 29817819 29820683 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703799 S 2026 0 1 "" nsv527477 6 29853054 29854848 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703921 S 2026 0 1 "" nsv350049 6 29871282 29871468 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368627 M 24 "" dgv1909e1 6 29900413 30000296 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv17580,essv20264,essv5521,essv8831,essv15829,essv21023,essv1857,essv14288,essv11163,essv10417,essv23366,essv21822,essv23915,essv18213,essv17951,essv21693,essv3373,essv1199,essv2972 M 271 0 0 "" NA06991,NA11839,NA12003,NA12057,NA12144,NA12248,NA12750,NA12762,NA12814,NA18508,NA18529,NA18945,NA18951,NA18976,NA18981,NA19194,NA19211,NA19222,NA19223 dgv1910e1 6 29900413 30083123 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv521,essv20027,essv2179 M 271 0 0 "" NA07048,NA18960 nsv522398 6 29920009 29920953 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695178 S 2026 0 1 "" nsv348699 6 29923215 29923586 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367277 M 24 "" nsv508398 6 29933756 30111382 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619972,nssv622545,nssv618786 M 4 0 3 "" NA10860,NA15510,NA18994 esv32544 6 29939695 30052082 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101464,essv101480,essv98877,essv100679,essv98283,essv94771,essv94085,essv94436,essv96938,essv97856,essv97825,essv97794,essv95347,essv97387,essv101649,essv101695,essv94624,essv94514,essv99003,essv92862,essv92704,essv93682,essv93749,essv96660,essv97228,essv98543,essv98647,essv99879,essv93491,essv94976,essv92624,essv96424,essv99151,essv97646,essv97656,essv97746,essv100119,essv100616,essv100527,essv100500,essv100362 M 51 25 8 "" 21603,21606,21656,21772,21791,21802,21808,21817,21837,21872,21879,21909,21932,21938,21939,21944,21972,22011,22075,22085,22086,22128,22231,22233,22261,22275,22278,22286,22298,22300 dgv739n27 6 29941520 29976963 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv462675,nsv462674 M 1557 2 0 "" HGDP00058,HGDP00098 nsv526095 6 29942020 29967496 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702343 S 2026 1 0 "" dgv1911e1 6 29942451 30026432 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv8971,essv18687,essv7502,essv6412,essv1074,essv616,essv1670,essv17674,essv198,essv1585,essv4523,essv3497,essv12933,essv6517,essv21644,essv1338,essv11337,essv13297,essv14845,essv6930,essv13376,essv2362,essv5005,essv20740,essv3643,essv21615,essv13225,essv8702,essv12089,essv12033,essv20702,essv19041,essv23740,essv12140,essv5612,essv604,essv22009,essv14045,essv6432,essv11298,essv4338,essv24024,essv10502,essv20486,essv24610,essv2711,essv7450,essv22709,essv5663,essv17412,essv935,essv6094,essv509,essv2111,essv18568,essv12883,essv14903,essv3588,essv3932,essv16171,essv1816 M 271 0 0 "" NA07034,NA07348,NA07357,NA10835,NA10851,NA12004,NA12056,NA12760,NA12761,NA12802,NA12813,NA12815,NA12873,NA12874,NA12875,NA18502,NA18506,NA18526,NA18545,NA18561,NA18571,NA18572,NA18582,NA18592,NA18593,NA18608,NA18621,NA18622,NA18623,NA18862,NA18863,NA18944,NA18947,NA18949,NA18952,NA18959,NA18969,NA18970,NA18971,NA18973,NA18990,NA18991,NA18992,NA18994,NA18995,NA18997,NA18998,NA18999,NA19094,NA19099,NA19116,NA19119,NA19120,NA19128,NA19129,NA19139,NA19143,NA19159,NA19173,NA19200,NA19202 dgv1912e1 6 29942451 30073480 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv8417,essv17403,essv1981 M 271 0 0 "" NA18855,NA18942,NA19093 dgv211e55 6 29944442 30024232 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv2752113,esv34603,esv34987 M 771 0 3 "" BEC_104,NA12760,NA18951 nsv442976 6 29945171 30029106 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv10810 6 29945444 30069394 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15158,nssv15219,nssv13970,nssv13886,nssv14308,nssv14596,nssv15181,nssv15128,nssv16011,nssv16523,nssv14017,nssv13987,nssv14268,nssv14298,nssv16560,nssv13552,nssv13817,nssv14015,nssv14115,nssv13847,nssv15897,nssv14583,nssv15981,nssv15867,nssv15189,nssv15853,nssv13974,nssv13787,nssv13855,nssv14102,nssv14464,nssv16364,nssv13522,nssv14338,nssv13582,nssv14494,nssv14566,nssv14826,nssv14145,nssv13001,nssv14706,nssv15211,nssv14328,nssv13856,nssv14796,nssv14042 M 31 25 5 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10847,NA10863,NA11830,NA12155,NA12740,NA12872,NA18504,NA18517,NA18537,NA18552,NA18563,NA18564,NA18853,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19144,NA19221,NA19240 nsv5240 6 29946438 30036537 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4903 S 9 0 1 "" NA19129 nsv433378 6 29962187 29981657 CNV Gain Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463259 S 9 1 0 Samples from several populations that are part of the HapMap project. "" NA19240 nsv437962 6 29964001 30002330 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv468733,nssv468731,nssv468727,nssv468734,nssv468732,nssv468728,nssv468730 M 269 0 6 Samples from several populations that are part of the HapMap project. "" NA18506,NA18507,NA19093,NA19094,NA19200,NA19202 dgv1913e1 6 29967224 29985664 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2763,essv1553,essv3265,essv18815,essv20727,essv24462,essv726,essv3915,essv2953 M 271 0 0 "" NA12248,NA12752,NA12865,NA18940,NA18960,NA18967,NA18972,NA19000,NA19012 dgv1914e1 6 29967224 30026432 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2424,essv11055,essv6487,essv19815,essv8884,essv23748,essv18777 M 271 0 0 "" NA11994,NA12864,NA12891,NA18636,NA18951,NA19138,NA19171 essv1660 6 29967224 30045368 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18961 dgv740n27 6 29967496 29994143 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv462712,nsv462703,nsv462715,nsv462704,nsv462677,nsv462700,nsv462708,nsv462725,nsv462714,nsv462685,nsv462730,nsv462701,nsv462729,nsv462678,nsv462686,nsv462691,nsv462706,nsv462698,nsv462710,nsv462702,nsv462718,nsv462713,nsv462676,nsv462724,nsv462687,nsv462679,nsv462722,nsv462680,nsv462696,nsv462695,nsv462721,nsv462731,nsv462684,nsv462720,nsv462692,nsv462682,nsv462711,nsv462732,nsv462719,nsv462690,nsv462709,nsv462699,nsv462689,nsv462726,nsv462688,nsv462697,nsv462717,nsv462707,nsv462693,nsv462723,nsv462681 M 1557 0 51 "" 1780854573_A,1780862384_A,1780862590_A,HGDP00003,HGDP00035,HGDP00094,HGDP00189,HGDP00234,HGDP00491,HGDP00540,HGDP00546,HGDP00547,HGDP00548,HGDP00556,HGDP00561,HGDP00574,HGDP00581,HGDP00606,HGDP00634,HGDP00655,HGDP00656,HGDP00662,HGDP00663,HGDP00680,HGDP00747,HGDP00750,HGDP00760,HGDP00772,HGDP00787,HGDP00806,HGDP00818,HGDP00837,HGDP00845,HGDP00868,HGDP00903,HGDP00954,HGDP01015,HGDP01027,HGDP01099,HGDP01181,HGDP01182,HGDP01203,HGDP01205,HGDP01206,HGDP01208,HGDP01211,HGDP01228,HGDP01239,HGDP01250,HGDP01255,HGDP01263 nsv516434 6 29967496 29994143 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv661549,nssv675422,nssv682546,nssv668336,nssv688848,nssv654891,nssv657262,nssv679326,nssv663549,nssv654431,nssv681232,nssv694023,nssv680779,nssv675131,nssv686054,nssv688374,nssv657173,nssv659135,nssv659373,nssv690050,nssv654550 M 2026 0 21 "" nsv462733 6 29967496 30045812 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538828 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00550 dgv115n17 6 29973038 29980401 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437488,nsv437489 M 60 0 2 "" NA18506,NA19202 dgv212e55 6 29979600 30023972 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv2752114,esv34953,esv34267,esv34660,esv34897 M 771 0 5 "" BEC_603,NA12865,NA18940,NA18967,NA19000 dgv116n17 6 29985002 30007656 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437492,nsv437493,nsv437490 M 60 0 3 "" NA18506,NA19120,NA19202 dgv1915e1 6 29993482 30014028 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv20714,essv712,essv24459 M 271 0 0 "" NA12752,NA12865,NA18940 essv7947 6 30006876 30025125 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19203 nsv350103 6 30007762 30009519 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368681 M 24 "" nsv350065 6 30011861 30011861 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368643 M 24 "" dgv1916e1 6 30025125 30072927 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv14937,essv6502 M 271 0 0 "" NA18572,NA19132 dgv741n27 6 30026078 30045812 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv462737,nsv462735,nsv462734,nsv462736 M 1557 0 4 "" HGDP00545,HGDP00554,HGDP00664,HGDP00788 nsv517134 6 30026078 30045812 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv688532,nssv690111,nssv683310,nssv699305,nssv680942,nssv656868,nssv663136,nssv681175,nssv679716,nssv663031,nssv680269,nssv653838,nssv690538,nssv675648,nssv664930,nssv698669,nssv672818,nssv663088,nssv662087,nssv675973,nssv659025,nssv655092 M 2026 0 22 "" nsv437494 6 30031095 30046237 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467375 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19132 dgv742n27 6 30032758 30045812 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv462741,nsv462740,nsv462738 M 1557 0 3 "" HGDP00479,HGDP00551,HGDP00552 nsv437963 6 30034576 30037232 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv468736,nssv468735 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA19131,NA19132 essv6051 6 30045083 30073480 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18603 nsv524794 6 30174010 30175871 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700786 S 2026 0 1 "" nsv5241 6 30408880 30443412 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv540 S 9 1 0 "" NA19240 nsv519809 6 30451682 30455812 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv678737,nssv658833 M 2026 0 2 "" nsv526251 6 30474079 30475991 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702523 S 2026 0 1 "" nsv518836 6 30475161 30475991 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696289 S 2026 0 1 "" nsv462742 6 30480549 30518185 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538837 S 1557 0 1 "" 1780862448_A nsv5242 6 30569557 30600190 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4905 S 9 1 0 "" NA19129 nsv5244 6 30653090 30697782 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8228 S 9 0 1 "" NA12156 nsv830626 6 30666043 30840884 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445321,nssv1445320 M 95 0 2 "" dgv1917e1 6 30752672 30924298 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv15379,esv779,essv13511 M 271 0 0 "" NA19160,NA19203 nsv10811 6 30759678 30763409 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15462,nssv16590,nssv15188 M 31 3 0 Samples from several populations that are part of the HapMap project. "" NA12155,NA18502,NA19221 nsv527226 6 30824698 30880357 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703626 S 2026 1 0 "" nsv525685 6 30864045 30864340 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701843 S 2026 0 1 "" essv1810 6 30893252 30896567 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18971 nsv10812 6 30893640 30897838 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14175 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18537 nsv526110 6 30908556 30918633 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702358 S 2026 1 0 "" nsv5245 6 30942330 30975481 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4906 S 9 1 0 "" NA19129 nsv525438 6 30972808 31041954 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701566 S 2026 1 0 "" nsv523346 6 30990492 31001920 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699095 S 2026 0 1 "" nsv462744 6 31028869 31063660 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538838 S 1557 0 1 "" NINDS_133 nsv516729 6 31040288 31040511 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv678854,nssv659341,nssv691882,nssv670491 M 2026 0 4 "" nsv518538 6 31091305 31099538 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695982 S 2026 1 0 "" nsv519229 6 31101512 31101569 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696720 S 2026 0 1 "" nsv517797 6 31101569 31104111 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694166 S 2026 0 1 "" nsv528807 6 31101569 31107976 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705481 S 2026 0 1 "" nsv350101 6 31120811 31120899 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368679 M 24 "" nsv524716 6 31131503 31132787 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700701 S 2026 0 1 "" dgv1918e1 6 31136269 31342560 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv10053,essv12313,essv21551,essv19239,essv22306,essv18965 M 271 0 0 "" NA06985,NA10838,NA12005,NA12873,NA19099,NA19138 dgv1919e1 6 31136269 31460757 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv20068,essv23868,essv21076,essv21839,essv22195,essv16474 M 271 0 0 "" NA06991,NA07048,NA11839,NA12044,NA12814,NA19139 esv690 6 31136269 31650287 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent + Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 "" nsv10813 6 31157997 31160763 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15492,nssv14368,nssv14524,nssv14047 M 31 4 0 Samples from several populations that are part of the HapMap project. "" NA10839,NA11830,NA18502,NA19144 nsv525933 6 31189184 31250224 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702139 S 2026 0 1 "" esv33699 6 31202824 31217990 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93775 S 51 0 1 "" 21972 nsv524061 6 31215066 31241922 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699927 S 2026 0 1 "" esv33724 6 31222452 31226552 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv96890,essv98365 M 51 2 0 "" 21817,22352 esv32635 6 31249483 31358597 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101194,essv100944,essv95112,essv94706,essv94723,essv101349,essv96912,essv97038,essv97849,essv97422,essv101681,essv94569,essv99093,essv93659,essv95935,essv93197,essv98086,essv99408,essv98362,essv96303 M 51 3 15 "" 21618,21693,21721,21791,21805,21817,21837,21879,21909,21932,21938,21972,22127,22170,22259,22335,22352,22371 nsv507322 6 31256440 31262440 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620337 S 4 1 0 "" NA15510 nsv10814 6 31315812 31346599 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14856,nssv15522,nssv14358,nssv14626,nssv13300,nssv16041,nssv14554,nssv14107,nssv14004 M 31 4 5 Samples from several populations that are part of the HapMap project. "" NA10839,NA10863,NA11830,NA12802,NA18502,NA18552,NA18564,NA18860,NA18975 esv2422229 6 31323928 31430913 CNV Deletion Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161346 S 181 0 1 "" ND04903 dgv377n21 6 31326218 31329018 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv519073,nsv526354 M 2026 0 2 "" essv12843 6 31338567 31342560 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19120 dgv1920e1 6 31338567 31460757 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2030,essv5382 M 271 0 0 "" NA18563,NA18949 dgv1921e1 6 31340561 31605085 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv7843,essv3089 M 271 0 0 "" NA18558,NA18969 esv35158 6 31341489 31426200 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6990373,essv6979502,essv6979503,essv6979504 M 771 1 0 "" NA18563 nsv525255 6 31342360 31349011 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701352 S 2026 1 0 "" nsv10815 6 31345931 31354990 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16071,nssv16620,nssv13877,nssv15218 M 31 4 0 Samples from several populations that are part of the HapMap project. "" NA12155,NA18563,NA18860,NA19221 esv2422407 6 31348933 31430913 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161445 S 181 1 0 "" ND00528 nsv516430 6 31349106 31351149 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv677880,nssv687707,nssv693706,nssv657213,nssv658684,nssv676623,nssv655570,nssv689875,nssv668318,nssv693613,nssv693268,nssv701246,nssv677032,nssv694263,nssv688212,nssv683982,nssv683228 M 2026 2 15 "" esv32781 6 31351351 31361665 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv96727 S 51 0 1 "" 22011 essv21944 6 31359339 31374314 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA07000 nsv10817 6 31360200 31427736 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14656,nssv13907,nssv16553,nssv14613,nssv16394,nssv15248,nssv12919,nssv14167,nssv14132,nssv14137,nssv14045,nssv15278,nssv14388,nssv13031,nssv13612,nssv14584,nssv13916,nssv15552,nssv15883,nssv14205 M 31 6 14 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10847,NA11830,NA12155,NA12872,NA18502,NA18504,NA18517,NA18537,NA18552,NA18563,NA18564,NA18572,NA18942,NA18972,NA19007 essv2723 6 31370848 31388921 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18944 nsv462749 6 31372440 31380753 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538839 S 1557 0 1 "" 1780862076_A dgv1922e1 6 31374096 31443686 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv6067,essv1713,essv6212 M 271 0 0 "" NA18563,NA18603,NA18968 dgv1923e1 6 31377008 31388921 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2381,essv5976,essv7259,essv6429,essv5945 M 271 0 0 "" NA18552,NA18577,NA18592,NA18635,NA18976 dgv1924e1 6 31377287 31425676 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv4345,essv4943,essv6106 M 271 0 0 "" NA18537,NA18573,NA18622 dgv743n27 6 31378997 31382224 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv462753,nsv462755,nsv462754,nsv462752 M 1557 0 4 "" 1780862094_A,1782681164_A,HGDP00526,HGDP00795 esv33109 6 31379607 31387591 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98781,essv100635,essv93735,essv99914,essv100237 M 51 4 1 "" 21606,21656,21972,22086,22286 nsv520891 6 31382359 31385967 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697673 S 2026 0 1 "" dgv378n21 6 31382672 31390117 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv523901,nsv528611 M 2026 2 0 "" nsv524261 6 31382672 31425326 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700158 S 2026 1 0 "" nsv516963 6 31383153 31422222 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv667350,nssv653966,nssv656621,nssv674222,nssv666526,nssv678559,nssv667074,nssv692071,nssv657893,nssv675354,nssv675479,nssv688727,nssv670635,nssv667967,nssv656020,nssv653377,nssv692498,nssv691441,nssv668220,nssv677540,nssv671949,nssv681538,nssv660910,nssv670943,nssv680161,nssv666601,nssv673071,nssv693614,nssv682186,nssv675677,nssv667186,nssv679095,nssv678036,nssv657600,nssv652907,nssv674706,nssv683599,nssv662332,nssv670191,nssv691856,nssv672774,nssv692587,nssv677286,nssv691729,nssv674855,nssv681879,nssv692813,nssv667433,nssv684890,nssv660635,nssv659002,nssv663032,nssv673035,nssv651764,nssv686687,nssv680400,nssv672954,nssv686921,nssv672487,nssv665975,nssv675678,nssv665250,nssv662516,nssv685257,nssv652846,nssv677312,nssv654125,nssv659881,nssv662798,nssv685542,nssv667232,nssv691337,nssv659543,nssv656152,nssv691758,nssv693196,nssv670015,nssv688872,nssv665843,nssv663089,nssv658603,nssv682388,nssv689154,nssv678796,nssv654247,nssv675750,nssv676561,nssv681655,nssv661235,nssv664514,nssv691950,nssv680724,nssv677857,nssv676022,nssv656311,nssv674514,nssv671010,nssv656709,nssv668685,nssv681758,nssv690112,nssv662826,nssv653441,nssv682774,nssv657971,nssv686626,nssv659486,nssv653893,nssv685994,nssv671095,nssv657086,nssv689925,nssv663385,nssv671988,nssv663417,nssv672230,nssv662938,nssv678975,nssv693504,nssv685765,nssv680982,nssv682644,nssv669411,nssv666112,nssv660849,nssv682304,nssv688033,nssv693521,nssv660658,nssv692413,nssv655594,nssv657942,nssv681817,nssv670405,nssv654530,nssv690082,nssv670106,nssv692995,nssv686569,nssv654578,nssv664013,nssv657923,nssv689924,nssv685076,nssv660659,nssv687095,nssv671308,nssv694024,nssv686169,nssv676799,nssv671354,nssv670031,nssv670395,nssv654268,nssv674284,nssv665105,nssv682212,nssv668496,nssv683439,nssv687457,nssv689434,nssv686587,nssv662635,nssv666183,nssv693356,nssv687898,nssv675116,nssv684842,nssv660944,nssv670921,nssv672716,nssv675381,nssv652697,nssv665070,nssv691612,nssv655458,nssv656528,nssv678252,nssv693751,nssv655247,nssv652146,nssv657119,nssv666306,nssv690689,nssv681772,nssv682871,nssv681318,nssv668142,nssv689557,nssv663930,nssv662284,nssv689205,nssv655485,nssv655675,nssv659930,nssv689105,nssv654892,nssv684139,nssv686008 M 2026 13 186 "" esv33563 6 31383484 31561647 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101561,essv101437,essv98865,essv97590,essv97525,essv101274,essv101149,essv101195,essv101234,essv93957,essv93822,essv93962,essv100785,essv100882,essv96752,essv96812,essv100954,essv101003,essv100996,essv95126,essv95232,essv98329,essv98307,essv98213,essv98189,essv94700,essv94710,essv94713,essv94763,essv94118,essv94033,essv101354,essv101321,essv101310,essv94454,essv94427,essv94329,essv96942,essv97901,essv97831,essv97800,essv95678,essv95624,essv95440,essv95500,essv93163,essv93038,essv95350,essv95354,essv95368,essv95379,essv95276,essv97331,essv97316,essv97293,essv97446,essv101619,essv101756,essv101701,essv101685,essv95859,essv95810,essv95801,essv95921,essv94504,essv94602,essv98958,essv98943,essv99064,essv92854,essv92735,essv92794,essv93643,essv96159,essv96223,essv96668,essv96594,essv96581,essv97208,essv97211,essv97217,essv97102,essv98603,essv98613,essv98634,essv98641,essv100065,essv95984,essv96054,essv93590,essv93492,essv93415,essv93260,essv93204,essv99593,essv99577,essv99705,essv94884,essv94904,essv94933,essv94977,essv92637,essv92663,essv92573,essv98044,essv97981,essv97991,essv98016,essv96524,essv96428,essv99143,essv99224,essv99182,essv97689,essv97694,essv97756,essv100214,essv100221,essv100474,essv100571,essv100564,essv100341,essv99535,essv99511,essv99487,essv98522,essv98501,essv98495,essv98360,essv96413,essv96318,essv96284,essv96273,essv94164,essv94195,essv94178 M 51 50 31 "" 21603,21606,21616,21618,21634,21656,21659,21693,21721,21772,21791,21802,21805,21808,21817,21837,21841,21847,21863,21872,21879,21909,21911,21932,21938,21939,21944,21972,22007,22011,22075,22085,22086,22127,22128,22170,22217,22231,22233,22259,22261,22275,22278,22286,22298,22300,22335,22352,22371,22394 essv7464 6 31385149 31388921 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18633 dgv1925e1 6 31385149 31392153 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv969,essv6529,essv5771,essv17405,essv7494,essv6495 M 271 0 0 "" NA12760,NA18540,NA18561,NA18611,NA18636,NA18981 nsv437964 6 31385347 31390441 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv468739,nssv468742,nssv468737,nssv468744,nssv468738,nssv468743 M 269 0 6 Samples from several populations that are part of the HapMap project. "" NA18500,NA18502,NA19119,NA19120,NA19201,NA19202 nsv818404 6 31385967 31390117 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417120 S 112 0 1 "" NA18537 dgv744n27 6 31385967 31428789 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv462804,nsv462756 M 1557 0 2 "" 1780854065_A,1780862403_A nsv462757 6 31389749 31389974 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538846 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00635 dgv745n27 6 31389749 31390117 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv462802,nsv462812,nsv462781,nsv462808,nsv462782,nsv462796,nsv462778,nsv462788,nsv462768,nsv462786,nsv462767,nsv462789,nsv462803,nsv462762,nsv462806,nsv462801,nsv462787,nsv462770,nsv462775,nsv462784,nsv462807,nsv462773,nsv462763,nsv462771,nsv462811,nsv462799,nsv462758,nsv462759,nsv462793,nsv462797,nsv462809,nsv462765,nsv462790,nsv462795,nsv462810,nsv462785,nsv462791,nsv462764,nsv462776,nsv462760,nsv462792,nsv462766,nsv462769,nsv462779,nsv462777,nsv462800,nsv462780,nsv462798,nsv462774 M 1557 0 49 "" 1780846030_A,1780854206_A,1780854574_A,1780862384_A,1782681099_A,1782681294_A,1782681495_A,HGDP00029,HGDP00143,HGDP00333,HGDP00412,HGDP00473,HGDP00491,HGDP00529,HGDP00574,HGDP00575,HGDP00599,HGDP00601,HGDP00614,HGDP00631,HGDP00634,HGDP00642,HGDP00701,HGDP00782,HGDP00872,HGDP00875,HGDP00880,HGDP00881,HGDP00892,HGDP00893,HGDP00968,HGDP01013,HGDP01031,HGDP01036,HGDP01066,HGDP01098,HGDP01269,HGDP01279,HGDP01304,HGDP01331,HGDP01337,HGDP01355,HGDP01405,HGDP01406,HGDP01408,HGDP01411,NINDS_134,NINDS_149,NINDS_86 nsv818405 6 31389749 31390117 CNV Gain+Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418073,nssv1415762,nssv1417995,nssv1418074,nssv1418075,nssv1418374,nssv1417996,nssv1417994,nssv1417723,nssv1415760,nssv1418373 M 112 1 10 "" NA07345,NA07348,NA07357,NA10847,NA10859,NA11881,NA11882,NA12239,NA12865,NA12875,NA19003 nsv818406 6 31389749 31422222 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416067 S 112 0 1 "" NA12813 nsv526319 6 31389749 31429190 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702606 S 2026 0 1 "" nsv442977 6 31394255 31404430 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv510022 6 31403889 31409889 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618231,nssv622111 M 4 0 2 "" CHM,NA10860 nsv462814 6 31416609 31435313 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538901 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00491 nsv10818 6 31430092 31436159 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16650,nssv14886 M 31 1 1 Samples from several populations that are part of the HapMap project. "" NA10863,NA19221 nsv10819 6 31438396 31443379 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15927,nssv14398,nssv14000 M 31 0 3 Samples from several populations that are part of the HapMap project. "" NA18853,NA19132,NA19144 dgv746n27 6 31442924 31448590 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv462815,nsv462817 M 1557 0 2 "" HGDP00745,HGDP00849 nsv517441 6 31444079 31571942 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv657284,nssv698611,nssv654908,nssv655952,nssv673735,nssv656529,nssv655412,nssv654364,nssv687336,nssv671309,nssv654787,nssv684684,nssv663432,nssv685386,nssv668860,nssv686748,nssv678651,nssv685884,nssv694041,nssv657866,nssv681090,nssv687534,nssv685312,nssv671878,nssv668821,nssv685850,nssv684218,nssv652028,nssv674498,nssv694001,nssv653006,nssv659386,nssv686937,nssv689876,nssv655175,nssv685059,nssv689155,nssv661084,nssv687804,nssv694201,nssv693235,nssv691883,nssv654414,nssv690083,nssv691588,nssv666800,nssv665347,nssv681759,nssv686570,nssv693114,nssv657149,nssv668189,nssv677365,nssv670788,nssv658685,nssv655290,nssv682938,nssv686432,nssv683229,nssv688644,nssv662665,nssv657957,nssv691813,nssv658197,nssv686749,nssv672577,nssv672409,nssv674182,nssv683405,nssv690743,nssv665155,nssv689521,nssv689945,nssv674241,nssv662302,nssv678282,nssv681747,nssv656813,nssv678579,nssv693197,nssv688113,nssv680117,nssv660391,nssv670680,nssv674063,nssv685851,nssv664835,nssv662567,nssv673247 M 2026 11 78 "" dgv57n64 6 31445794 31448590 CNV Loss Wang_et_al_2007 17921354 SNP_array nsv818408,nsv818407 M 112 0 2 "" NA18949,NA18971 nsv441989 6 31445851 31448789 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv509125 6 31447455 31507081 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623473 S 4 1 0 "" NA18994 dgv213e55 6 31460859 31606700 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv2752119,esv2752115,esv2752118 M 771 3 0 "" BEC_516,BEC_627,SPC_54 dgv214e55 6 31461308 31565557 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv2752116,esv2752122,esv2752117,esv2752120 M 771 4 0 "" BEC_445,BEC_691,BEC_814,SPC_100 dgv1926e1 6 31461308 31568199 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv6851,essv6210,essv7685,essv13301,essv3592 M 271 0 0 "" NA18558,NA18563,NA18620,NA18969,NA19202 essv13266 6 31461308 31650287 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19201 dgv747n27 6 31462798 31567721 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv462863,nsv462845,nsv462847,nsv462823,nsv462842,nsv462824,nsv462861,nsv462830,nsv462849,nsv462825,nsv462860,nsv462828,nsv462835,nsv462834,nsv462850,nsv462821,nsv462852,nsv462836,nsv462858,nsv462831,nsv462866,nsv462822,nsv462846,nsv462833,nsv462820,nsv462829,nsv462853,nsv462826,nsv462832,nsv462864,nsv462859,nsv462848,nsv462819,nsv462865 M 1557 0 34 "" 1780862094_A,1780862101_A,HGDP00110,HGDP00120,HGDP00445,HGDP00656,HGDP00675,HGDP00689,HGDP00699,HGDP00733,HGDP00739,HGDP00753,HGDP00762,HGDP00771,HGDP00832,HGDP00852,HGDP00868,HGDP00876,HGDP00920,HGDP00927,HGDP00945,HGDP00975,HGDP01023,HGDP01096,HGDP01203,HGDP01208,HGDP01212,HGDP01223,HGDP01237,HGDP01240,HGDP01250,HGDP01251,HGDP01290,NINDS_191 nsv10820 6 31466904 31559796 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13946,nssv14458,nssv13937,nssv15987,nssv16680,nssv15957 M 31 1 4 Samples from several populations that are part of the HapMap project. "" NA18563,NA19007,NA19132,NA19144,NA19221 dgv215e55 6 31467600 31582667 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv34376,esv34950,esv34991,esv34619,esv35005,esv34444,esv34684,esv2752121 M 771 0 8 "" NA15510,NA18558,NA18563,NA18620,NA18969,NA19201,NA19202,SPC_162 nsv441990 6 31467630 31559451 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv748n27 6 31468368 31485566 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv462844,nsv462843 M 1557 0 2 "" HGDP00621,HGDP00641 nsv462854 6 31468368 31565557 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538935 S 1557 1 0 "" NINDS_192 nsv818409 6 31468368 31565557 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417198 S 112 0 1 "" NA18558 nsv437496 6 31490890 31499597 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467377 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19202 esv2752123 6 31495946 31554525 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6986280,essv6986279,essv6982836,essv6982837,essv6988591 M 771 1 0 "" BEC_603 nsv5246 6 31528288 31558534 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2580 S 9 0 1 "" NA18555 nsv10821 6 31561240 31584461 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13967 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18563 dgv1927e1 6 31568086 31605085 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv4773,essv14527,essv5400,essv14457 M 271 0 0 "" NA18563,NA18620,NA19201,NA19202 nsv462869 6 31571942 31589084 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538944 S 1557 0 1 "" NINDS_266 nsv830627 6 31604193 31767929 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445322 S 95 0 1 "" nsv526235 6 31604894 31605378 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702502 S 2026 0 1 "" nsv462870 6 31636109 31652168 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538945 S 1557 0 1 "" NINDS_22 nsv462871 6 31683255 31740113 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538946 S 1557 0 1 "" NINDS_50 nsv349349 6 31803109 31803297 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367927 M 24 "" nsv349350 6 31803450 31803929 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367928 M 24 "" nsv482094 6 31891270 31893698 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558455 S 1 1 0 "" KB1 nsv508399 6 31937453 32010402 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622546 S 4 0 1 "" NA18994 nsv509126 6 31937453 32010402 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620849 S 4 1 0 "" NA15510 nsv10822 6 31974748 31979669 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16710 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19221 nsv10823 6 31978975 31988205 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14488 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19144 dgv1928e1 6 31979491 32200821 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv12207,essv9636,essv2693,essv1517,essv7095,essv16523,essv20166,essv14699,essv15106,essv13752,essv22992,essv21304,essv10743,essv7783,essv11703,essv20412,essv21078,essv13487,essv5725,essv10621,essv17279,essv20608,essv14106,essv9751,essv14549,essv17978,essv17782,essv22760,essv2042,essv9215,essv15499 M 271 0 0 "" NA06991,NA07019,NA07056,NA07357,NA10830,NA10831,NA10855,NA11832,NA12003,NA18505,NA18523,NA18537,NA18542,NA18593,NA18855,NA18856,NA18861,NA18863,NA18949,NA18967,NA18980,NA19101,NA19128,NA19129,NA19141,NA19153,NA19154,NA19159,NA19192,NA19202,NA19210 dgv1929e1 6 31979491 32317091 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv22061,essv7868,essv13196,esv324,essv8315 M 271 0 0 "" NA12154,NA18558,NA19102,NA19103 nsv830628 6 31995533 32055579 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445343,nssv1445337,nssv1445356,nssv1445359,nssv1445358,nssv1445341,nssv1445327,nssv1445346,nssv1445323,nssv1445325,nssv1445326,nssv1445324,nssv1445361,nssv1445360,nssv1445336,nssv1445354,nssv1445345,nssv1445342,nssv1445353,nssv1445331,nssv1445330,nssv1445352,nssv1445328,nssv1445332,nssv1445344,nssv1445355,nssv1445335,nssv1445347,nssv1445349,nssv1445334,nssv1445357,nssv1445339,nssv1445348,nssv1445350,nssv1445338,nssv1445333 M 95 0 36 "" nsv284 6 32033718 32104699 CNV Loss Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv284 S 1 0 1 "" NA15510 nsv5247 6 32033718 32131194 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4907,nssv11124,nssv541,nssv3427,nssv11123,nssv9425,nssv4908,nssv2581,nssv3428 M 9 0 6 "" NA12878,NA15510,NA18517,NA18555,NA19129,NA19240 nsv10824 6 32056113 32122002 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14034,nssv14916,nssv14643,nssv16454,nssv16131,nssv14197,nssv15249,nssv14235,nssv15582 M 31 5 4 Samples from several populations that are part of the HapMap project. "" NA07048,NA10863,NA11830,NA12740,NA18502,NA18517,NA18537,NA18860,NA18975 dgv20n31 6 32066001 32121881 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis nsv471327,nsv471331,nsv471541,nsv471460 M 3 "" esv32938 6 32071845 32082041 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97168 S 51 1 0 "" 22075 nsv285 6 32085024 32131194 CNV Loss Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv285 S 1 0 1 "" NA15510 nsv471443 6 32090550 32111173 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548290,nssv548292,nssv548291 M 3 "" nsv510023 6 32091189 32097189 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621280,nssv622112 M 4 0 2 "" NA10860,NA15510 nsv433379 6 32102419 32115844 CNV Gain Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463260 S 9 1 0 Samples from several populations that are part of the HapMap project. "" NA12156 nsv5248 6 32103993 32127390 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6060,nssv4909 M 9 2 0 "" NA12156,NA19129 nsv10825 6 32133710 32137570 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14518 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19144 nsv830629 6 32151956 32297765 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445363 S 95 0 1 "" nsv462877 6 32259421 32285878 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538948 S 1557 0 1 "" 1798860372_A nsv10826 6 32277318 32294474 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16583 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18972 nsv524299 6 32313023 32317005 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700200 S 2026 1 0 "" nsv349123 6 32330958 32330958 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367701 M 24 "" nsv348996 6 32343057 32343284 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367574 M 24 "" nsv830630 6 32392474 32562221 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445364 S 95 0 1 "" nsv509127 6 32453082 32464592 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619446 S 4 1 0 "" NA10860 nsv528483 6 32454772 32456123 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705086 S 2026 0 1 "" nsv7882 6 32465721 32477790 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13642,nssv16613 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18942,NA18972 esv33644 6 32475132 32479820 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv95650 S 51 0 1 "" 21841 dgv1930e1 6 32479731 32665861 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv12706,essv1875,essv18212,essv8835,essv9788,essv11085,essv12002,essv15890,essv63,essv11827,essv16964,essv3872,essv24896,essv1256,essv10728,essv23234,essv1356,essv11687,essv22057,essv8746,essv919,essv1523,essv17465,essv24759,essv21279,essv9223,essv20388,essv12506,essv17531,essv4554,essv15757,essv7176,essv9590,essv16724,essv5589,essv15207,essv14891,essv13791,essv20775,essv18940,essv24428,essv9439,essv16479,essv9083,essv8612,essv19225,essv9314,essv17650,essv4627,essv11574,essv17259,essv14075,essv6885,essv12972,essv23872,essv532,essv7267,essv23803,essv17187,essv10444,essv24871,essv2845,essv11883,essv15704,essv9664,essv10911,essv21519,essv3047,essv4729,essv18713,essv3815,essv22377,essv1439,essv22346,essv14713,essv22844,essv6561,essv8086,essv24968,essv8221,essv9119,essv17836,essv12229,essv9919,essv10328 M 271 0 0 "" NA06985,NA06994,NA07000,NA07029,NA10830,NA10831,NA10838,NA10839,NA10855,NA10860,NA11881,NA12004,NA12005,NA12043,NA12057,NA12146,NA12154,NA12707,NA12762,NA12763,NA12814,NA12873,NA12874,NA12875,NA18503,NA18506,NA18508,NA18515,NA18517,NA18521,NA18522,NA18523,NA18524,NA18529,NA18547,NA18592,NA18594,NA18605,NA18620,NA18621,NA18853,NA18859,NA18860,NA18861,NA18863,NA18912,NA18913,NA18914,NA18943,NA18944,NA18953,NA18976,NA18980,NA18981,NA18991,NA18994,NA18995,NA18998,NA19000,NA19007,NA19092,NA19094,NA19101,NA19116,NA19128,NA19131,NA19132,NA19141,NA19142,NA19144,NA19145,NA19153,NA19154,NA19159,NA19171,NA19173,NA19206,NA19207,NA19208,NA19209,NA19210,NA19211,NA19221,NA19223,NA19239 dgv1931e1 6 32479731 32813412 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv3226,essv22650,essv9998,essv12349,essv14175,essv8307,essv18158,essv6388,essv16453,essv10584,esv126,essv19550,essv21992,essv7044,essv20159,essv15513,essv15612,essv141 M 271 0 0 "" NA11832,NA11993,NA11995,NA12752,NA12864,NA18505,NA18572,NA18612,NA18968,NA18974,NA19099,NA19103,NA19137,NA19138,NA19139,NA19140,NA19240 nsv830631 6 32491645 32694093 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445367,nssv1445368,nssv1445369,nssv1445366,nssv1445365 M 95 5 0 "" dgv1932e1 6 32503398 32593944 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv14383,essv12476,essv24474,essv669,essv7149,essv18165,essv1834,essv8857,essv20220,essv8488,essv14584,essv16543,essv3486,essv6340,essv20392,essv1290,essv11903,essv10011,essv9211,essv22169,essv22557,essv11880,essv20049,essv15260,essv4822,essv18069,essv10542,essv10806,essv12187,essv16146,essv16039,essv24055,essv23998,essv4194,essv6629,essv319,essv18598,essv12802,essv20109,essv22064,essv4469,essv270,essv3301,essv9894,essv22938,essv5303,essv13573,essv10084,essv4880,essv18427,essv6752,essv11771,essv15610,essv15877,essv16410,essv6657,essv14141,essv2818,essv20313,essv21780,essv16653,essv22628,essv21691,essv7364,essv18402,essv20164,essv16926,essv5998,essv802,essv21012,essv11733,essv13663,essv24567,essv8959,essv18864,essv23136,essv6393,essv13771,essv14342,essv11151,essv4664,essv11518,essv5045,essv13454,essv23357,essv9611,essv6282,essv20897,essv8129,essv7114,essv24533,essv22488,essv12530,essv17630,essv10654,essv17346,essv13190,essv11426,essv8370,essv3122,essv8202,essv15393,essv17135,essv21163,essv5922,essv18149,essv8780,essv21187,essv17778,essv5266,essv12401,essv14964,essv10865,essv19079,essv17086,essv9425,essv3967,essv16790,essv15626,essv19187,essv2541,essv21982,essv16226,essv18304,essv15032,essv9685,essv14485,essv12740,essv2350,essv24305,essv1587,essv21814,essv21444,essv5814,essv5122,essv17926,essv3349,essv6956,essv21327,essv3711,essv5224,essv10364,essv24151,essv13623,essv20639,essv2052,essv23024,essv1161,essv20615,essv466,essv6825,essv1033,essv4810,essv1915,essv14703,essv10886,essv1089,essv11018,essv3208,essv2245,essv2628,essv15487,essv22192,essv145,essv10238,essv7003,essv21253,essv10349 M 271 0 0 "" NA06991,NA07048,NA07055,NA07056,NA07345,NA07348,NA07357,NA10830,NA10831,NA10846,NA10847,NA10855,NA10856,NA10857,NA10859,NA11830,NA11831,NA11832,NA11839,NA11882,NA11992,NA11993,NA11995,NA12003,NA12044,NA12056,NA12057,NA12144,NA12145,NA12154,NA12234,NA12236,NA12239,NA12248,NA12249,NA12716,NA12717,NA12750,NA12751,NA12752,NA12753,NA12801,NA12802,NA12812,NA12815,NA12865,NA12878,NA12891,NA12892,NA18501,NA18502,NA18504,NA18505,NA18506,NA18507,NA18508,NA18516,NA18523,NA18526,NA18537,NA18540,NA18547,NA18550,NA18552,NA18561,NA18562,NA18563,NA18566,NA18570,NA18571,NA18572,NA18576,NA18577,NA18579,NA18582,NA18594,NA18608,NA18609,NA18611,NA18612,NA18620,NA18621,NA18624,NA18636,NA18855,NA18856,NA18857,NA18858,NA18870,NA18871,NA18872,NA18912,NA18913,NA18914,NA18940,NA18942,NA18945,NA18947,NA18949,NA18951,NA18952,NA18959,NA18964,NA18966,NA18967,NA18968,NA18969,NA18970,NA18971,NA18972,NA18973,NA18974,NA18975,NA18976,NA18978,NA18987,NA18992,NA18995,NA19003,NA19005,NA19092,NA19093,NA19094,NA19098,NA19099,NA19100,NA19101,NA19102,NA19116,NA19119,NA19120,NA19127,NA19128,NA19129,NA19130,NA19137,NA19139,NA19140,NA19141,NA19142,NA19143,NA19144,NA19145,NA19152,NA19153,NA19154,NA19159,NA19160,NA19161,NA19171,NA19172,NA19173,NA19192,NA19194,NA19200,NA19202,NA19203,NA19206,NA19207,NA19208,NA19209,NA19210,NA19211,NA19221,NA19222,NA19223,NA19238,NA19240 esv33476 6 32519964 32760940 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98794,essv98790,essv98770,essv98911,essv98833,essv98713,essv98710,essv98709,essv98708,essv98665,essv98810,essv98804,essv97559,essv97510,essv97549,essv101154,essv101112,essv101123,essv101174,essv101191,essv101197,essv101200,essv101225,essv93946,essv93909,essv93840,essv100874,essv96867,essv96872,essv96845,essv96850,essv96788,essv100959,essv100926,essv101090,essv100981,essv95072,essv95171,essv95114,essv95196,essv98285,essv98267,essv98248,essv98203,essv98202,essv98192,essv98185,essv98160,essv94735,essv94788,essv94791,essv94821,essv94656,essv94651,essv94130,essv94104,essv94097,essv94093,essv94081,essv94015,essv101404,essv94313,essv94320,essv94438,essv94394,essv94382,essv94353,essv94349,essv97019,essv97016,essv97012,essv96998,essv96917,essv96913,essv96904,essv96899,essv97047,essv97031,essv97947,essv97931,essv97926,essv97873,essv97872,essv97871,essv97864,essv97857,essv97835,essv95635,essv95716,essv95722,essv95729,essv95749,essv95756,essv95598,essv95569,essv95675,essv95424,essv95455,essv95511,essv95547,essv93170,essv93169,essv93150,essv93130,essv93128,essv93125,essv93096,essv93082,essv93063,essv93033,essv93008,essv93003,essv95298,essv95317,essv95332,essv95360,essv95364,essv95404,essv97390,essv97379,essv97365,essv97343,essv97324,essv97319,essv97305,essv97453,essv97439,essv97435,essv97432,essv97419,essv97418,essv101787,essv101773,essv101757,essv101743,essv101742,essv101729,essv101715,essv101692,essv95888,essv95850,essv95765,essv95763,essv95924,essv94539,essv94519,essv99023,essv99025,essv99029,essv92910,essv92946,essv92950,essv92984,essv92997,essv92694,essv92728,essv92736,essv92747,essv92795,essv92829,essv92831,essv93688,essv93662,essv93714,essv96102,essv96111,essv96222,essv96203,essv96181,essv96682,essv96678,essv96665,essv96653,essv96631,essv96624,essv96612,essv96607,essv96731,essv96717,essv96713,essv96703,essv97103,essv97107,essv97134,essv97140,essv97154,essv99999,essv99965,essv99954,essv99953,essv99816,essv99831,essv99849,essv95930,essv95997,essv96032,essv96075,essv93580,essv93584,essv93585,essv93429,essv93446,essv93457,essv93464,essv93466,essv93526,essv93527,essv93528,essv93529,essv93534,essv93570,essv93359,essv93337,essv93321,essv93293,essv93284,essv93235,essv93221,essv93181,essv99738,essv99727,essv99723,essv99720,essv99657,essv94859,essv94868,essv94897,essv94941,essv94953,essv94954,essv94970,essv94971,essv95003,essv95008,essv95014,essv95044,essv92636,essv92555,essv92512,essv92556,essv92561,essv92589,essv92603,essv98043,essv98077,essv98083,essv98088,essv98117,essv98121,essv97978,essv97988,essv98029,essv96533,essv96555,essv96573,essv96452,essv96445,essv99339,essv99209,essv99180,essv97613,essv97648,essv97661,essv97697,essv97786,essv100205,essv100271,essv100147,essv100149,essv100181,essv100184,essv100192,essv100615,essv100597,essv100621,essv100460,essv100465,essv100516,essv100492,essv100482,essv100428,essv100416,essv100343,essv98519,essv98468,essv98466,essv98418,essv98373,essv98359,essv98357,essv98348,essv96410,essv96383,essv96369,essv96361,essv96301,essv96278,essv96418,essv94287,essv94278,essv94263,essv94218,essv94181,essv94170,essv94167,essv94166 M 51 47 38 "" 21606,21616,21618,21634,21656,21659,21693,21721,21772,21791,21802,21805,21808,21817,21837,21841,21847,21863,21872,21879,21909,21911,21932,21938,21939,21944,21972,22007,22011,22075,22086,22127,22128,22170,22217,22231,22233,22259,22261,22275,22278,22286,22298,22300,22352,22371,22394 dgv1933e1 6 32528488 32665861 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv21850,essv22538,essv3291,essv16164,essv7135,essv24072,essv20104,essv21716,essv23615,essv22310,essv21017,essv23381,essv6285,essv17649,essv19253,essv24964,essv17090,essv5181,essv16768,essv19181,essv21534,essv17947,essv2234,essv19020,essv1923,essv1142,essv3130,essv7846,essv13182 M 271 0 0 "" NA06985,NA06991,NA07048,NA07348,NA10838,NA10839,NA10859,NA11839,NA11881,NA12003,NA12005,NA12006,NA12248,NA12750,NA12865,NA12873,NA18537,NA18558,NA18611,NA18636,NA18872,NA18959,NA18964,NA18966,NA18969,NA18972,NA19100,NA19102,NA19172 nsv7883 6 32538477 32763421 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15519,nssv15399,nssv13061,nssv17010,nssv15126,nssv17190,nssv14836,nssv16814,nssv14838,nssv13241,nssv15368,nssv12979,nssv14688,nssv13792,nssv14806,nssv14508,nssv13997,nssv16934,nssv16161,nssv16703,nssv14036,nssv14448,nssv15241,nssv15548,nssv14614,nssv16994,nssv17070,nssv14467,nssv14117,nssv14638,nssv14728,nssv16137,nssv14818,nssv14276,nssv16694,nssv14207,nssv14808,nssv16311,nssv16063,nssv15732,nssv15489,nssv14639,nssv16860,nssv14437,nssv16950,nssv14246,nssv16980,nssv13069,nssv13009,nssv14180,nssv14156,nssv13480,nssv16673,nssv14896,nssv16047,nssv14849,nssv12949,nssv14126,nssv16221,nssv15338,nssv14237,nssv16281,nssv14674,nssv14265,nssv15309,nssv14698,nssv14866,nssv13271,nssv16341,nssv15973,nssv13945,nssv14703,nssv14155,nssv16643,nssv13672,nssv15458,nssv14064,nssv16904,nssv16167,nssv14793,nssv14668,nssv15642,nssv13129,nssv16874,nssv13976,nssv16634,nssv15339,nssv13181,nssv14267,nssv13390,nssv14579,nssv14848,nssv14210,nssv15913,nssv16213,nssv16964,nssv17040,nssv17024,nssv14669,nssv14135,nssv16401,nssv14644,nssv14673,nssv13975,nssv13912,nssv13249,nssv14568,nssv16077,nssv15672,nssv16003,nssv14147,nssv15308,nssv13039,nssv16287,nssv13510,nssv14154,nssv14240,nssv16273,nssv15066,nssv14729,nssv14222,nssv16544,nssv16197,nssv13915,nssv16514,nssv14716,nssv14287,nssv14035,nssv13852,nssv16257,nssv14478,nssv14295,nssv14120,nssv13702,nssv16484,nssv14165,nssv14628,nssv14609,nssv14252,nssv13121,nssv14060,nssv14598,nssv14186,nssv16800,nssv13309,nssv16724,nssv14066,nssv16371,nssv14245,nssv16604,nssv14027,nssv13540,nssv13885,nssv16153,nssv14105,nssv14030,nssv16574,nssv16191,nssv14177,nssv14185,nssv14150,nssv14282,nssv16347,nssv13942,nssv16830,nssv14215,nssv13732,nssv14878,nssv14312,nssv14317,nssv14270,nssv14006,nssv16784,nssv17160,nssv14819,nssv15518,nssv15369,nssv14608,nssv16243,nssv13882,nssv16303,nssv14355,nssv14658,nssv16664,nssv14946,nssv16123,nssv14124,nssv16227,nssv14976,nssv15943,nssv14578,nssv13450,nssv14195,nssv13360,nssv14325,nssv14065,nssv16333,nssv13159,nssv14057,nssv14699,nssv15271,nssv16317,nssv14216,nssv13330,nssv14686,nssv16251,nssv13189,nssv17130,nssv14347,nssv15702,nssv14192,nssv14005,nssv15488,nssv14377,nssv13211,nssv15549,nssv13822,nssv14538,nssv16740,nssv14548,nssv16890,nssv13219,nssv14718,nssv14257,nssv15279,nssv14125,nssv16844,nssv15398,nssv15612,nssv13279,nssv15006,nssv16920,nssv16033,nssv16017,nssv13151,nssv15459,nssv16183,nssv14227,nssv14162,nssv15036 M 31 30 25 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10847,NA10863,NA11830,NA12155,NA12740,NA12802,NA12872,NA18502,NA18504,NA18517,NA18537,NA18552,NA18563,NA18564,NA18572,NA18853,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19144,NA19173,NA19221,NA19240 nsv442978 6 32539530 32681749 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv511120 6 32539973 32901449 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624304,nssv622374 M 4 0 0 "" NA10860,NA18994 nsv471491 6 32558001 32598262 CNV Deletion Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv547819 S 3 "" nsv433380 6 32565228 32584593 CNV Gain Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463261 S 9 1 0 Samples from several populations that are part of the HapMap project. "" NA18956 essv22046 6 32610887 32634805 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12154 dgv1934e1 6 32610887 32650604 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv801,essv13172,essv8814,essv21294,essv15755,essv2692,essv22297,essv1257,essv4186,essv10798,essv7743,essv14114,essv24304,essv8773,essv22996,essv4480,essv2825,essv4803,essv16858,essv12790,essv9466,essv5794,essv9208,essv24806,essv1637,essv20319,essv19606,essv4138,essv10374,essv10090,essv8441,essv12520,essv20363,essv13706,essv11837,essv14423,essv1166,essv9061,essv16314,essv4950,essv20958,essv17641,essv19252,essv9345,essv5042,essv11528,essv10639,essv6608,essv23008,essv22523,essv17777,essv11451,essv20569,essv8374,essv24981,essv18863,essv15000,essv21407,essv5326,essv6333,essv17736,essv9668,essv21521,essv16124,essv12733,essv1441,essv5513,essv4625,essv13515,essv20677,essv22747,essv456,essv15383,essv21238,essv1963,essv16517,essv7341,essv18267,essv410 M 271 0 0 "" NA06985,NA07019,NA07056,NA07357,NA10830,NA10831,NA10838,NA10839,NA10846,NA10855,NA10856,NA10860,NA11830,NA11881,NA11882,NA12155,NA12236,NA12740,NA12751,NA12801,NA12812,NA12872,NA12873,NA12892,NA18508,NA18516,NA18523,NA18526,NA18542,NA18552,NA18555,NA18563,NA18566,NA18570,NA18576,NA18594,NA18609,NA18620,NA18621,NA18632,NA18637,NA18853,NA18855,NA18857,NA18858,NA18861,NA18870,NA18913,NA18914,NA18942,NA18944,NA18951,NA18952,NA18959,NA18967,NA18971,NA18973,NA18987,NA18995,NA19092,NA19100,NA19102,NA19119,NA19120,NA19128,NA19130,NA19131,NA19132,NA19160,NA19173,NA19193,NA19201,NA19203,NA19205,NA19207,NA19208,NA19210,NA19221,NA19222 dgv1935e1 6 32610887 32813412 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv7167,essv18220,essv15868,essv3341,essv18414,essv6716,essv24078,essv13140,essv8238,essv18634,essv19006,essv15259,essv21845,essv11142,essv17161,essv22326,essv24785,essv1849,essv16715,essv11028,essv22211,essv13744,essv23687,essv12163,essv15104,essv9881,essv21037,essv8119,essv14625,essv16959,essv17662,essv14688,essv23387,essv22504,essv17350,essv19988,essv23920,essv23603,essv25026,essv14568,essv9630,essv10933,essv19101,essv15675,essv16230,essv21561,essv13605,essv22567,essv22358,essv15993,essv17934,essv1104,essv3295,essv2284,essv10201,essv11705,essv10330 M 271 0 0 "" NA06985,NA06991,NA07048,NA07055,NA07348,NA10839,NA10859,NA10860,NA10863,NA11839,NA11881,NA11882,NA12003,NA12005,NA12006,NA12044,NA12057,NA12234,NA12249,NA12750,NA12814,NA12873,NA12875,NA18501,NA18506,NA18547,NA18608,NA18856,NA18912,NA18945,NA18964,NA18966,NA18972,NA18976,NA19093,NA19094,NA19101,NA19102,NA19116,NA19127,NA19129,NA19141,NA19142,NA19143,NA19144,NA19145,NA19152,NA19153,NA19154,NA19159,NA19161,NA19171,NA19202,NA19206,NA19209,NA19211,NA19223 dgv1936e1 6 32634806 32650604 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv4566,essv19188,essv17878,essv18975,essv2259,essv11748 M 271 0 0 "" NA12003,NA12005,NA12865,NA18504,NA18524,NA18966 nsv348855 6 32655565 32655887 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367433 M 24 "" nsv462878 6 32677669 32698903 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538949 S 1557 0 1 "" 1782681247_A dgv749n27 6 32677669 32710408 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv462879,nsv462880 M 1557 0 2 "" 1798860210_A,HGDP00086 nsv462881 6 32677669 32735692 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538952 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00066 nsv517109 6 32681003 32688681 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv675423,nssv686300,nssv653799,nssv687232,nssv696064 M 2026 0 5 "" dgv750n27 6 32686030 32763196 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv462885,nsv462883 M 1557 0 2 "" HGDP00546,HGDP00737 nsv830632 6 32689826 32876613 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445370 S 95 0 1 "" nsv442979 6 32700999 32710085 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv525222 6 32710408 32763196 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701309 S 2026 0 1 "" esv32765 6 32711716 32763337 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101168,essv93799,essv100832,essv101010,essv95093,essv98182,essv94678,essv101306,essv97878,essv95441,essv97289,essv94477,essv92849,essv95955,essv99629,essv98106,essv96528,essv99286,essv97662,essv100164 M 51 20 0 "" 21618,21634,21656,21693,21721,21772,21791,21805,21837,21847,21879,21932,21939,22127,22217,22259,22261,22275,22278,22286 nsv437501 6 32745001 32759095 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467382 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19120 nsv437500 6 32745658 32756697 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467381 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18521 nsv517426 6 32759095 32763196 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv659948,nssv662799,nssv683728,nssv693729,nssv691399,nssv674376,nssv678915,nssv674064,nssv674352,nssv693615,nssv654831,nssv656253,nssv652147,nssv674795,nssv676511,nssv674958,nssv681233,nssv676562,nssv677073,nssv686149,nssv694002,nssv656291,nssv664128,nssv680440,nssv689365,nssv656104,nssv690902,nssv669022,nssv668025,nssv682775,nssv676061,nssv666138,nssv663386,nssv658155,nssv678717,nssv660065,nssv653393,nssv652674,nssv680097,nssv678738,nssv666465,nssv686784,nssv653265,nssv683474,nssv689558,nssv651995,nssv662391,nssv667997,nssv676816,nssv676899,nssv662992,nssv667256,nssv657027,nssv680457,nssv658033,nssv686906,nssv670295,nssv671136,nssv693019,nssv667693,nssv660525,nssv661725,nssv655291,nssv672221,nssv681931,nssv687164,nssv670571,nssv667925,nssv691400,nssv679327,nssv667038 M 2026 0 71 "" nsv462886 6 32760295 32772436 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538956 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01250 nsv7884 6 32763421 32767130 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15301 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19240 esv33117 6 32765697 32787066 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv95079,essv93022,essv97325,essv96462,essv100594,essv100497 M 51 0 5 "" 21721,21863,21879,22261,22298 nsv7885 6 32766412 32772134 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14225 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA10847 nsv516438 6 32773398 32773737 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv683962,nssv668416,nssv688406,nssv697426 M 2026 0 4 "" nsv522682 6 32773398 32774504 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv706090 S 2026 0 1 "" nsv528310 6 32774800 32777417 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704888 S 2026 0 1 "" nsv462887 6 32774800 32777745 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538957 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01323 nsv7886 6 32775260 32793749 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14184,nssv14497,nssv16733,nssv13339,nssv14385,nssv14306 M 31 5 1 Samples from several populations that are part of the HapMap project. "" NA11830,NA18537,NA18572,NA18972,NA18975,NA19007 nsv437966 6 32776417 32780066 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv468750,nssv468756,nssv468748,nssv468751,nssv468755,nssv468753,nssv468749,nssv468754 M 269 0 8 Samples from several populations that are part of the HapMap project. "" NA18500,NA18501,NA18506,NA18508,NA18521,NA18523,NA19192,NA19194 nsv523398 6 32777062 32777249 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699149 S 2026 0 1 "" nsv521352 6 32777062 32777417 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697963 S 2026 0 1 "" nsv462888 6 32777062 32778088 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538958 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00732 nsv462889 6 32777134 32779226 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538959 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00734 nsv521353 6 32778554 32787668 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697964 S 2026 0 1 "" nsv516740 6 32783168 32785066 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv670572,nssv662610 M 2026 0 2 "" nsv349440 6 32784556 32785007 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368018 M 24 "" nsv462890 6 32790642 32793843 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538960 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00309 nsv507323 6 32795747 32801747 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617702 S 4 1 0 "" CHM nsv7887 6 32796355 32810771 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15331,nssv15579,nssv16363,nssv15156,nssv15361,nssv14214,nssv16377,nssv14336,nssv15792 M 31 8 1 Samples from several populations that are part of the HapMap project. "" NA10863,NA12740,NA18502,NA18504,NA18975,NA19007,NA19132,NA19240 esv32761 6 32816473 32821064 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv95619 S 51 0 1 "" 21841 nsv527563 6 32873429 32877641 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704024 S 2026 0 1 "" nsv510024 6 32884679 32890679 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621282,nssv618232 M 4 0 2 "" CHM,NA15510 esv33465 6 32903573 32903648 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100550 S 51 0 1 "" 22298 esv32583 6 32903573 32904136 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97759 S 51 0 1 "" 22278 nsv522573 6 32904663 32906261 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705957 S 2026 0 1 "" nsv830633 6 32904840 33071389 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445371 S 95 0 1 "" nsv462891 6 32906526 32912912 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538961 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01147 nsv508400 6 32947274 33000150 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618787 S 4 0 1 "" NA10860 dgv1937e1 6 32973767 33072074 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv4849,essv9436,esv250 M 271 0 0 "" NA18540,NA19208 nsv523465 6 32977893 32978035 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699223 S 2026 0 1 "" esv33619 6 33014616 33014679 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93618 S 51 1 0 "" 21972 nsv527280 6 33045879 33049169 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703692 S 2026 0 1 "" nsv526252 6 33069082 33070398 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702524 S 2026 0 1 "" nsv462892 6 33162839 33168927 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538962 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01290 nsv516221 6 33162839 33193829 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv666882,nssv662088,nssv696796,nssv673411,nssv680983,nssv681345 M 2026 0 6 "" esv33191 6 33191586 33191647 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101026,essv98306,essv94815,essv94087,essv101352,essv97908,essv95554,essv94540,essv97133,essv93270,essv92567,essv96496,essv97763,essv100283,essv100514,essv96381 M 51 16 0 "" 21693,21772,21791,21802,21805,21837,21847,21932,22075,22170,22233,22261,22278,22286,22298,22371 esv32606 6 33193163 33203995 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98697 S 51 1 0 "" 21606 esv32959 6 33216135 33216241 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv95821 S 51 0 1 "" 21911 nsv528907 6 33244123 33250517 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705592 S 2026 0 1 "" nsv348539 6 33252386 33253403 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367117 M 24 "" nsv830634 6 33269195 33438723 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445374,nssv1445372 M 95 0 2 "" nsv522719 6 33271429 33290873 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698349 S 2026 0 1 "" nsv5249 6 33339721 33357456 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8229 S 9 0 1 "" NA12156 nsv830635 6 33345983 33521765 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445375 S 95 0 1 "" nsv510025 6 33429524 33435524 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618233 S 4 0 1 "" CHM nsv830637 6 33437343 33618682 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445377,nssv1445376 M 95 0 2 "" nsv437503 6 33516520 33529555 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467384 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19208 nsv521506 6 33576129 33588716 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698123 S 2026 1 0 "" nsv524010 6 33576129 33613959 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699870 S 2026 0 1 "" nsv528962 6 33588413 33593219 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705658 S 2026 0 1 "" nsv519079 6 33648187 33650516 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696550 S 2026 0 1 "" dgv85n68 6 33659180 33819324 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH nsv830638,nsv830639 M 95 0 2 "" nsv5250 6 33672995 33706348 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2582 S 9 0 1 "" NA18555 nsv522906 6 33746158 33755629 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698564 S 2026 0 1 "" nsv509128 6 33811955 33899311 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619447 S 4 1 0 "" NA10860 nsv5251 6 33993058 34006026 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4910 S 9 1 0 "" NA19129 nsv5252 6 34027425 34063358 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3429 S 9 0 1 "" NA12878 nsv527079 6 34035289 34051992 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703458 S 2026 0 1 "" dgv118n17 6 34036368 34051992 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437507,nsv437506,nsv437505,nsv437504 M 60 0 4 "" NA18500,NA18857,NA19094,NA19161 nsv437508 6 34045166 34051992 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467389 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19139 nsv437967 6 34046274 34050206 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv468765,nssv468761,nssv468757,nssv468762,nssv468760,nssv468768,nssv468767,nssv468764,nssv468759,nssv468758,nssv468769,nssv468766 M 269 0 12 Samples from several populations that are part of the HapMap project. "" NA18500,NA18502,NA18855,NA18857,NA19092,NA19094,NA19138,NA19139,NA19160,NA19161,NA19204,NA19205 nsv442980 6 34046721 34050683 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv509129 6 34138605 34174797 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619448 S 4 1 0 "" NA10860 nsv5253 6 34373872 34379925 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10493 S 9 1 0 "" NA18956 esv33496 6 34425516 34426525 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98262,essv94455 M 51 0 2 "" 21772,21808 dgv1938e1 6 34490470 34822655 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv238,essv1208 M 271 0 0 "" NA18951 nsv462904 6 34524366 34600990 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538963 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01211 nsv516578 6 34590993 34669563 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv662089,nssv676764,nssv700401,nssv669286 M 2026 0 4 "" nsv818410 6 34646522 34687409 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417415 S 112 1 0 "" NA18951 nsv830640 6 34650467 34822655 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445380 S 95 0 1 "" nsv7888 6 34723059 34730674 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16461 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18860 nsv5255 6 34766547 34811541 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8230 S 9 0 1 "" NA12156 nsv508401 6 34777686 34818280 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617516 S 4 0 1 "" CHM esv32827 6 34802784 34808099 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100984,essv95444,essv93210 M 51 0 3 "" 21693,21847,22170 nsv462905 6 34836231 34994414 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538964 S 1557 1 0 "" 1780854206_A nsv508402 6 34948939 35059266 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622547 S 4 0 1 "" NA18994 nsv5256 6 35012153 35046052 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4911 S 9 1 0 "" NA19129 nsv5257 6 35033291 35078079 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8231 S 9 0 1 "" NA12156 nsv349272 6 35212185 35212785 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367850 M 24 "" dgv1939e1 6 35276094 35398980 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv35,essv5331 M 271 0 0 "" NA18563 esv2750621 6 35335146 35336197 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100660 S 51 1 0 "" 21656 esv32738 6 35338171 35338201 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100885 S 51 1 0 "" 21656 nsv830641 6 35390512 35548581 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445381 S 95 0 1 "" nsv528424 6 35397424 35400182 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705017 S 2026 0 1 "" nsv462907 6 35441777 35516937 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538966 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00286 nsv528351 6 35485900 35573764 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704935 S 2026 0 1 "" nsv519370 6 35486756 35645384 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696816 S 2026 0 1 "" nsv462909 6 35565374 35610180 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538967 S 1557 0 1 "" NINDS_49 dgv1940e1 6 35571719 35914482 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv109,essv11530 M 271 0 0 "" NA19173 nsv7889 6 35603481 35674366 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14879 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19173 dgv751n27 6 35610180 35670618 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv462910,nsv462911,nsv462912 M 1557 3 0 "" HGDP00479,HGDP00941,HGDP01262 nsv818412 6 35610180 35670618 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416546,nssv1416547 M 112 2 0 "" NA19172,NA19173 nsv462913 6 35610180 35700722 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538971 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01266 nsv517211 6 35610180 35715549 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv681980,nssv670258,nssv673440,nssv666568,nssv651751,nssv693945,nssv654020,nssv661085,nssv662028,nssv666166,nssv687535,nssv687600,nssv653101,nssv683963,nssv685313 M 2026 15 0 "" nsv441992 6 35613289 35672789 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv7379 6 35675775 35708060 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6061 S 9 0 0 "" NA12156 nsv5258 6 35709702 35766322 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8233,nssv2583 M 9 0 2 "" NA12156,NA18555 nsv821646 6 35712406 35910572 CNV Loss Sebat_et_al_2004 15273396 ROMA Custom Nimblegen photoprint 85000 probe ROMA oligo array nssv1421185,nssv1421186,nssv1421181,nssv1421184,nssv1421415,nssv1421417,nssv1421183,nssv1421414,nssv1421182,nssv1421416 M 31 0 10 "" nsv508403 6 35727023 35751746 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617517 S 4 0 1 "" CHM dgv1941e1 6 35745061 35914482 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv23777,essv24398,essv18993 M 271 0 0 "" NA12005,NA12707,NA12763 nsv7890 6 35799999 35809889 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15822 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18502 nsv524941 6 35842029 35853633 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700956 S 2026 0 1 "" nsv525686 6 35842029 35858277 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701844 S 2026 1 0 "" esv32896 6 35842880 35848128 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98683 S 51 0 1 "" 21606 nsv7891 6 35852168 35880517 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16491,nssv14255,nssv14366,nssv14908,nssv14926,nssv14445,nssv14909,nssv16393,nssv14275,nssv13369,nssv15852,nssv15578,nssv13570,nssv14823,nssv15391,nssv14300,nssv14527,nssv17054,nssv14704,nssv16407 M 31 20 0 Samples from several populations that are part of the HapMap project. "" NA07048,NA10839,NA10847,NA11830,NA12155,NA12802,NA18502,NA18504,NA18517,NA18537,NA18552,NA18572,NA18853,NA18860,NA18980,NA19007,NA19132,NA19144,NA19173,NA19240 esv33535 6 35855681 35879293 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98668,essv97601,essv101116,essv93945,essv100896,essv96803,essv100951,essv95216,essv94804,essv94098,essv101363,essv94418,essv96968,essv97868,essv95617,essv93034,essv95240,essv97302,essv95845,essv94563,essv99071,essv92972,essv92769,essv93696,essv96151,essv96688,essv96060,essv93530,essv93275,essv95007,essv92539,essv96494,essv99208,essv97739,essv100152,essv100595,essv100444,essv98427,essv96275 M 51 39 0 "" 21606,21616,21618,21634,21656,21659,21693,21721,21791,21802,21805,21808,21817,21837,21841,21863,21872,21879,21911,21932,21938,21939,21944,21972,22007,22011,22127,22128,22170,22231,22233,22261,22275,22278,22286,22298,22300,22352,22371 nsv5259 6 35857915 35896057 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv542,nssv543,nssv9426,nssv3430,nssv2585,nssv2584,nssv6063,nssv4912 M 9 6 0 "" NA12156,NA12878,NA18517,NA18555,NA19129,NA19240 nsv511122 6 35862031 35893128 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618650 S 4 0 0 "" CHM nsv528432 6 36066849 36143332 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705025 S 2026 1 0 "" esv33691 6 36373457 36377613 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101277,essv100175,essv98481 M 51 2 1 "" 21805,22286,22352 nsv350047 6 36551214 36553849 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368625 M 24 "" nsv5260 6 36579442 36624097 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8234 S 9 0 1 "" NA12156 nsv350009 6 36647342 36649413 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368587 M 24 "" nsv524053 6 36803201 36855384 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699919 S 2026 0 1 "" dgv379n21 6 36810262 36821698 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv520755,nsv525168 M 2026 0 2 "" nsv5261 6 36862523 36906802 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2586 S 9 0 1 "" NA18555 nsv818413 6 36863380 36867746 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417303 S 112 0 1 "" NA18608 nsv5262 6 36907307 36934188 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8235 S 9 0 1 "" NA12156 dgv380n21 6 37023884 37033752 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv519499,nsv522653 M 2026 2 0 "" nsv525288 6 37042222 37045625 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701393 S 2026 0 1 "" nsv5263 6 37049603 37080087 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8236 S 9 0 1 "" NA12156 nsv518386 6 37050724 37145648 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695817 S 2026 1 0 "" nsv515488 6 37086723 37097565 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv688668,nssv690764,nssv653290,nssv657792,nssv674575,nssv665909,nssv678307,nssv680098 M 2026 0 8 "" nsv5264 6 37234358 37256615 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8237 S 9 1 0 "" NA12156 nsv527191 6 37281771 37288501 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703588 S 2026 0 1 "" nsv521807 6 37403608 37413600 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694099 S 2026 0 1 "" nsv520294 6 37468535 37488302 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697332 S 2026 1 0 "" esv2752124 6 37524197 37788600 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6981876,essv6981877,essv6981878,essv6985686,essv6985687 M 771 1 0 "" BEC_497 nsv5266 6 37582420 37586081 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2722 S 9 1 0 "" NA18555 nsv462914 6 37610563 37625463 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538972 S 1557 0 1 "" 1780862306_A dgv381n21 6 37640081 37653901 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv522466,nsv522098 M 2026 0 2 "" nsv5267 6 37669086 37672682 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv544 S 9 1 0 "" NA19240 nsv348792 6 37804080 37804080 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367370 M 24 "" nsv349059 6 37829552 37829753 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367637 M 24 "" nsv348662 6 37940415 37940476 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367240 M 24 "" esv34450 6 38071286 38115219 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6990380,essv6979558,essv6979557 M 771 1 0 "" NA18571 nsv507324 6 38157957 38163957 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622966,nssv617703,nssv621834 M 4 3 0 "" CHM,NA10860,NA18994 nsv524213 6 38214822 38268605 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700100 S 2026 0 1 "" nsv517973 6 38239420 38260438 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695386 S 2026 0 1 "" nsv522522 6 38239420 38315614 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705892 S 2026 1 0 "" nsv520567 6 38252247 38260438 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv672600,nssv703800,nssv688560 M 2026 0 3 "" nsv520053 6 38262919 38315614 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697197 S 2026 1 0 "" nsv5268 6 38301353 38309241 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3431 S 9 1 0 "" NA12878 nsv349297 6 38342331 38342381 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367875 M 24 "" nsv507325 6 38460890 38466890 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622967,nssv620338 M 4 2 0 "" NA15510,NA18994 nsv441993 6 38499784 38510599 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv515670 6 38503852 38508117 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv664323,nssv687304,nssv671725,nssv656153,nssv662029,nssv682813,nssv664931,nssv663588,nssv672333,nssv690051,nssv677929,nssv657624 M 2026 0 12 "" nsv523561 6 38503852 38514714 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699342 S 2026 0 1 "" dgv1942e1 6 38696947 38819063 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv20047,essv7097,essv20915,essv15102,esv99,essv3048,essv379 M 271 0 0 "" NA07048,NA12801,NA18537,NA18971,NA18981,NA19129 nsv830642 6 38753034 38908635 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445382 S 95 0 1 "" nsv507326 6 38764792 38770792 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620339 S 4 1 0 "" NA15510 nsv830643 6 38834653 39013567 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445383 S 95 0 1 "" nsv462915 6 38836120 38881271 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538973 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00914 nsv462916 6 38855748 38890379 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538974 S 1557 0 1 "" 1780854279_A nsv5269 6 38939275 38972283 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3432 S 9 1 0 "" NA12878 nsv462918 6 38983730 39009214 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538976 S 1557 0 1 "" 1780854231_A nsv349927 6 38997777 38997827 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368505 M 24 "" nsv528852 6 39016493 39018353 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705531 S 2026 0 1 "" nsv5270 6 39050521 39082799 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3434 S 9 1 0 "" NA12878 nsv528286 6 39127481 39168456 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704856 S 2026 1 0 "" nsv519907 6 39140393 39162990 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv659439,nssv705521,nssv662777 M 2026 0 3 "" nsv462919 6 39158362 39170968 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538977 S 1557 0 1 "" 1780854065_A nsv441994 6 39176890 39180010 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv516974 6 39177246 39180012 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv680943,nssv666483,nssv664240,nssv660712,nssv691884,nssv660345,nssv686750,nssv676393,nssv679602,nssv653464,nssv664859,nssv691127,nssv666801 M 2026 0 13 "" nsv830644 6 39224508 39433958 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445385 S 95 0 1 "" nsv524717 6 39247742 39257118 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700702 S 2026 0 1 "" nsv830645 6 39335579 39516288 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445386 S 95 0 1 "" nsv519606 6 39337741 39338549 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696948 S 2026 1 0 "" nsv5271 6 39628138 39661864 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8238 S 9 1 0 "" NA12156 nsv508405 6 39646780 39710086 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622548 S 4 0 1 "" NA18994 nsv462920 6 39652809 39696096 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538978 S 1557 0 1 "" 1780862310_A nsv509130 6 39908355 39951486 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623474 S 4 1 0 "" NA18994 nsv462921 6 39937201 39967645 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538979 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01003 nsv515601 6 40112018 40137160 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv658337,nssv657852,nssv664048,nssv684171,nssv686821,nssv692858,nssv679717,nssv656266 M 2026 0 8 "" nsv5272 6 40190314 40212471 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8239 S 9 1 0 "" NA12156 nsv350081 6 40209982 40210051 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368659 M 24 "" nsv518791 6 40405825 40418551 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696244 S 2026 0 1 "" nsv5273 6 40449512 40494536 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8240 S 9 0 1 "" NA12156 nsv348769 6 40473487 40476829 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367347 M 24 "" nsv519241 6 40499542 40500347 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696734 S 2026 1 0 "" nsv525098 6 40582919 40585151 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701157 S 2026 0 1 "" dgv752n27 6 40723593 40749271 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv462923,nsv462922 M 1557 0 2 "" HGDP00757,HGDP01101 nsv517805 6 40799348 40801381 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695209 S 2026 0 1 "" nsv5274 6 40821616 40854958 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2588 S 9 1 0 "" NA18555 nsv349443 6 40980435 40980435 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368021 M 24 "" nsv5275 6 41057468 41069207 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8241 S 9 0 1 "" NA12156 nsv526577 6 41113480 41137320 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702895 S 2026 0 1 "" nsv5277 6 41187733 41221898 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8242 S 9 1 0 "" NA12156 nsv482095 6 41225322 41230048 CNV Loss Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558456 S 1 0 1 "" KB1 nsv515617 6 41398436 41401027 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv670766,nssv691273,nssv706007,nssv657462,nssv662090,nssv665398,nssv664115 M 2026 3 4 "" dgv1943e1 6 41696767 41807431 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv667,essv1628 M 271 0 0 "" NA18942 dgv1944e1 6 41706502 41749467 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv8060,essv13958 M 271 0 0 "" NA19160,NA19161 nsv519925 6 41727028 41733588 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694354 S 2026 0 1 "" dgv1945e1 6 41727028 41737704 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv10977,essv8571 M 271 0 0 "" NA19092,NA19130 nsv528949 6 41751364 41752419 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705643 S 2026 0 1 "" nsv526309 6 41792368 41792623 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702592 S 2026 0 1 "" nsv7893 6 41807597 41812168 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13301 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA12872 nsv5278 6 41982366 41983901 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv546 S 9 1 0 "" NA19240 nsv830646 6 41991766 42172189 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445387 S 95 0 1 "" nsv526116 6 42032256 42035791 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702366 S 2026 0 1 "" nsv527131 6 42103275 42105904 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703518 S 2026 0 1 "" nsv830649 6 42123312 42307413 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445389,nssv1445388 M 95 0 2 "" dgv753n27 6 42160729 42207349 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv462926,nsv462925 M 1557 0 2 "" NINDS_65,NINDS_70 nsv510026 6 42253010 42259010 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624000 S 4 0 1 "" NA18994 nsv5279 6 42474681 42505880 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4604 S 9 0 1 "" NA19129 nsv526599 6 42604472 42679785 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702918 S 2026 1 0 "" nsv348569 6 42608569 42608880 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367147 M 24 "" nsv524011 6 42614077 42769382 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699871 S 2026 0 1 "" nsv518847 6 42679785 42749682 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696300 S 2026 0 1 "" nsv350088 6 42690143 42690143 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368666 M 24 "" nsv5280 6 42697160 42711496 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2723 S 9 1 0 "" NA18555 nsv520653 6 42748704 42749682 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv683828,nssv673593 M 2026 2 0 "" nsv830650 6 42766209 42949116 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445390 S 95 0 1 "" nsv507327 6 42771348 42777348 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620340 S 4 1 0 "" NA15510 nsv519124 6 42785731 42791039 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696601 S 2026 0 1 "" nsv524764 6 42830268 42831787 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700755 S 2026 0 1 "" nsv433480 6 42910716 42920266 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463361 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA18956 nsv830651 6 42921279 43076587 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445391 S 95 0 1 "" nsv462927 6 43023898 43186434 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538984 S 1557 0 1 "" NINDS_266 nsv462929 6 43066878 43078728 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538986 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00148 nsv462930 6 43078485 43186434 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538987 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01172 nsv437509 6 43146041 43191752 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467390 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18521 nsv462932 6 43173891 43222680 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538988 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00696 nsv521730 6 43197407 43292110 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694490 S 2026 0 1 "" nsv517442 6 43352692 43353352 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv679410,nssv660742,nssv663764,nssv683148,nssv692950,nssv680923,nssv655676,nssv658686,nssv677033,nssv689877,nssv657214,nssv686962,nssv658696,nssv666056,nssv693298,nssv679328,nssv665050,nssv687730,nssv675851,nssv689025,nssv675453,nssv686170,nssv676023,nssv677514,nssv665675,nssv657028,nssv652029,nssv668978,nssv681748,nssv654651 M 2026 0 30 "" nsv525187 6 43352692 43367065 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701265 S 2026 0 1 "" nsv348832 6 43427903 43427903 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367410 M 24 "" nsv349211 6 43493995 43494063 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367789 M 24 "" nsv818414 6 43583452 43604640 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417997 S 112 1 0 "" NA07357 nsv5281 6 43686805 43731620 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8243 S 9 0 1 "" NA12156 nsv510027 6 43919129 43925129 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618234,nssv621283 M 4 0 2 "" CHM,NA15510 nsv521642 6 43940155 43942229 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698262 S 2026 0 1 "" nsv818415 6 43940155 43942229 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417029,nssv1417027 M 112 0 2 "" NA06994,NA07029 nsv509131 6 43984487 44146937 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619450,nssv619449,nssv623476 M 4 2 0 "" NA10860,NA18994 nsv349704 6 44039421 44039541 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368282 M 24 "" nsv462934 6 44064593 44115424 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538989 S 1557 0 1 "" NINDS_55 nsv462935 6 44154121 44225585 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538990 S 1557 0 1 "" NINDS_259 nsv509132 6 44199436 44260775 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623477 S 4 1 0 "" NA18994 nsv510028 6 44257775 44263775 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621284,nssv618235 M 4 0 2 "" CHM,NA15510 nsv526408 6 44264448 44271602 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702708 S 2026 1 0 "" nsv5282 6 44292853 44334869 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10494,nssv8244,nssv3435 M 9 3 0 "" NA12156,NA12878,NA18956 nsv462936 6 44299898 44390294 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538991 S 1557 0 1 "" 1780862300_A nsv524398 6 44308931 44361743 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700316 S 2026 0 1 "" nsv522456 6 44389694 44396825 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705819 S 2026 1 0 "" nsv516456 6 44390294 44406287 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv684444,nssv668519 M 2026 2 0 "" nsv517370 6 44493419 44530667 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv667299,nssv665399,nssv669815,nssv690020,nssv678993,nssv663681,nssv669570,nssv651833,nssv688561,nssv695531,nssv660040,nssv676648,nssv676701,nssv689134 M 2026 8 6 "" nsv5283 6 44613960 44625109 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv547 S 9 0 1 "" NA19240 nsv441995 6 44621323 44622929 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv528484 6 44628429 44632151 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705087 S 2026 0 1 "" nsv516165 6 44631569 44632151 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv674319,nssv670492,nssv663528,nssv662778,nssv684654,nssv681346,nssv692268,nssv693074,nssv685060,nssv673722,nssv690461,nssv690416,nssv666569,nssv663502 M 2026 0 14 "" nsv527194 6 44631569 44642375 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703592 S 2026 0 1 "" nsv5284 6 44668389 44696997 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10495 S 9 1 0 "" NA18956 nsv349354 6 44721477 44721792 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367932 M 24 "" nsv5285 6 44861051 44896170 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv548 S 9 1 0 "" NA19240 nsv5286 6 44973268 45017893 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8245 S 9 0 1 "" NA12156 dgv1946e1 6 44987769 45164736 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv505,essv5275 M 271 0 0 "" NA18624 nsv462938 6 45017493 45116757 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538992 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00491 essv2555 6 45061736 45097497 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18974 nsv5288 6 45133973 45165270 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10496 S 9 1 0 "" NA18956 nsv528130 6 45164064 45191944 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704675 S 2026 0 1 "" nsv830652 6 45295445 45436961 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445392 S 95 0 1 "" nsv527552 6 45455622 45457487 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704013 S 2026 0 1 "" nsv462940 6 45640192 45653953 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538994 S 1557 0 1 "" 1780862378_A nsv528105 6 45934617 45948582 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704646 S 2026 0 1 "" dgv1947e1 6 45993620 45995399 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv5769,esv1406 M 271 0 0 "" NA18540 nsv517891 6 46007801 46023066 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695299 S 2026 1 0 "" nsv349891 6 46075418 46075744 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368469 M 24 "" nsv830653 6 46385532 46542950 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445393 S 95 1 0 "" nsv348640 6 46709554 46715031 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367218 M 24 "" nsv523148 6 46777895 46780902 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698856 S 2026 0 1 "" dgv1948e1 6 46808141 47036030 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv15460,essv6151,essv4841,essv2056,essv5372,essv24295,esv27,essv12547,essv23907,essv3403 M 271 0 0 "" NA10856,NA12814,NA18505,NA18532,NA18540,NA18563,NA18945,NA18949,NA19098 nsv7894 6 46810648 46812822 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14557 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA11830 nsv830654 6 46830857 47013865 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445394 S 95 1 0 "" nsv7895 6 46904923 46933901 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14297 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18563 nsv521031 6 46997273 47011707 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697744 S 2026 1 0 "" nsv5289 6 47272170 47304150 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10497 S 9 1 0 "" NA18956 nsv471637 6 47414986 47569358 CNV Gain+Loss Sharp et al 2005 15918152 BAC_aCGH,FISH Eichler Segmental Duplication BAC array nssv549639,nssv549636,nssv549638,nssv549637,nssv549640 M 48 1 4 "" JK776,NA10976,NA10979,NA15732,NA17020 nsv7896 6 47425978 47427964 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15608,nssv16453 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA12155,NA18504 nsv526028 6 47455668 47456409 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702259 S 2026 1 0 "" nsv830655 6 47483221 47671273 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445396 S 95 1 0 "" nsv7897 6 47524623 47527236 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15882 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18502 nsv5290 6 47527830 47566601 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4913,nssv11125,nssv2589 M 9 3 0 "" NA15510,NA18555,NA19129 nsv350137 6 47739498 47739548 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368715 M 24 "" nsv518371 6 47754707 47766586 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695798 S 2026 0 1 "" nsv507328 6 47790095 47796095 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621835,nssv622968,nssv617704 M 4 3 0 "" CHM,NA10860,NA18994 dgv1949e1 6 47798026 47814999 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1275,essv12053 M 271 0 0 "" NA19238 nsv830656 6 47988108 48136638 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445398,nssv1445397,nssv1445399 M 95 3 0 "" nsv525003 6 48176725 48176833 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701037 S 2026 0 1 "" nsv5291 6 48454532 48487977 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3436 S 9 1 0 "" NA12878 nsv830657 6 48495673 48674615 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445401,nssv1445400,nssv1445402 M 95 2 1 "" nsv462942 6 48588223 48706158 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538995 S 1557 0 1 "" 1780862014_A nsv830658 6 48605863 48740482 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445404,nssv1445403 M 95 0 2 "" esv2752125 6 48683922 48826548 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6986160,essv6986159,essv6982408,essv6982407,essv6988532 M 771 1 0 "" BEC_437 nsv348802 6 48908528 48908528 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367380 M 24 "" nsv5292 6 48945812 48992037 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6064 S 9 0 1 "" NA12156 nsv508406 6 49036065 49041157 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618789 S 4 0 1 "" NA10860 nsv5293 6 49038061 49050451 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3437 S 9 0 1 "" NA12878 nsv442982 6 49039688 49043159 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv521530 6 49244922 49277296 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698147 S 2026 0 1 "" nsv462943 6 49426984 49484883 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538996 S 1557 0 1 "" 1798860114_A nsv441996 6 49539524 49555254 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv5294 6 49924747 49961305 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6065 S 9 0 1 "" NA12156 nsv5295 6 50063037 50115669 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv549 S 9 0 1 "" NA19240 nsv818416 6 50360274 50379554 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417220 S 112 0 1 "" NA18576 nsv5296 6 50623687 50639883 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8246 S 9 0 1 "" NA12156 dgv1950e1 6 50627298 50775800 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv53,essv19944 M 271 0 0 "" NA12813 esv33851 6 50649959 50659352 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99555 S 51 1 0 "" 22335 nsv5297 6 50658390 50690687 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10498 S 9 1 0 "" NA18956 nsv7898 6 50666781 50670211 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14327 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18563 nsv349822 6 50873931 50874241 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368400 M 24 "" nsv830660 6 50904457 51087248 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445405 S 95 1 0 "" nsv830661 6 51002883 51196617 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445408 S 95 0 1 "" nsv509133 6 51129326 51207151 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619451,nssv618050,nssv620850 M 4 3 0 "" CHM,NA10860,NA15510 nsv511123 6 51129326 51207151 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624305 S 4 0 0 "" NA18994 nsv5300 6 51139144 51140722 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3438 S 9 1 0 "" NA12878 nsv5301 6 51229517 51274348 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8248 S 9 0 1 "" NA12156 nsv5302 6 51314359 51359309 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8249 S 9 0 1 "" NA12156 nsv349924 6 51364246 51364561 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368502 M 24 "" nsv349925 6 51427002 51432783 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368503 M 24 "" dgv1951e1 6 51472475 51548810 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv379,essv1620 M 271 0 0 "" NA18942 nsv526396 6 51478694 51484663 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702695 S 2026 0 1 "" nsv349942 6 51530640 51533636 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368520 M 24 "" nsv7380 6 51534370 51574456 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2590 S 9 0 0 "" NA18555 nsv526292 6 51705517 51750794 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702573 S 2026 1 0 "" nsv510899 6 51761509 51800991 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624306,nssv621588 M 4 0 0 "" NA15510,NA18994 nsv510029 6 51770943 51776943 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618236 S 4 0 1 "" CHM esv33924 6 51776784 51777084 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93319 S 51 1 0 "" 22170 nsv507329 6 51777716 51783716 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617705 S 4 1 0 "" CHM esv33429 6 51780890 51781041 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97946,essv97288 M 51 2 0 "" 21837,21879 nsv5303 6 51818197 51896887 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4914,nssv2591,nssv11126,nssv550 M 9 0 4 "" NA15510,NA18555,NA19129,NA19240 nsv349361 6 51847528 51853565 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367939 M 24 "" nsv509134 6 51932953 51975821 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620851 S 4 1 0 "" NA15510 nsv830662 6 52037630 52237235 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445409 S 95 1 0 "" nsv522645 6 52082248 52179974 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv706045 S 2026 1 0 "" nsv527443 6 52363570 52371703 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703884 S 2026 0 1 "" nsv517935 6 52386307 52393791 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695347 S 2026 0 1 "" nsv522674 6 52468290 52479378 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv706080 S 2026 0 1 "" nsv518713 6 52470364 52493023 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696163 S 2026 0 1 "" nsv527895 6 52479378 52489144 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704398 S 2026 0 1 "" nsv830663 6 52487834 52672265 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445410 S 95 0 1 "" nsv519812 6 52577863 52584642 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697064 S 2026 0 1 "" nsv462945 6 52615564 52816756 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538997 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00628 nsv517722 6 52675354 52676301 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv657693,nssv652987,nssv688407 M 2026 0 3 "" nsv523124 6 52717623 52729563 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698825 S 2026 0 1 "" esv2752126 6 52721018 52797500 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6981843,essv6981842,essv6985678 M 771 1 0 "" BEC_492 dgv1952e1 6 52730063 52774200 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1277,essv3910 M 271 0 0 "" NA18960 nsv482096 6 52764138 52776623 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558457 S 1 1 0 "" KB1 nsv482097 6 52804502 52818852 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558458 S 1 1 0 "" KB1 nsv5304 6 52896888 52918637 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4915 S 9 0 1 "" NA19129 nsv7899 6 52900786 52905511 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14939 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19173 dgv1953e1 6 52900813 52930406 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv14660,essv9854,essv14906 M 271 0 0 "" NA19129,NA19144,NA19145 dgv1954e1 6 52900813 52969163 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv11378,esv1264 M 271 0 0 "" NA19127 nsv7900 6 52904081 52912128 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14938 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19144 nsv526421 6 52905380 52909987 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702722 S 2026 0 1 "" nsv818417 6 52905380 52909987 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418154,nssv1418155 M 112 0 2 "" NA19144,NA19145 nsv441997 6 52906021 52910202 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv348838 6 52942031 52942031 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367416 M 24 "" nsv348715 6 52942039 52942039 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367293 M 24 "" nsv520784 6 53097965 53099317 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697607 S 2026 1 0 "" nsv521755 6 53343590 53372444 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694522 S 2026 1 0 "" nsv5305 6 53389576 53421163 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10499 S 9 1 0 "" NA18956 nsv516447 6 53572959 53576038 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv659403,nssv668461,nssv663712 M 2026 0 3 "" nsv519037 6 53624994 53640096 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696506 S 2026 0 1 "" nsv830664 6 53805980 53933229 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445411 S 95 1 0 "" nsv5306 6 53848108 53882272 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2724 S 9 1 0 "" NA18555 dgv1955e1 6 53947332 54115308 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv4462,esv545 M 271 0 0 "" NA18552 nsv515808 6 53963448 53973626 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv688133,nssv664836,nssv656848 M 2026 0 3 "" nsv5307 6 53982077 54060189 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10500,nssv3439,nssv6066,nssv4916 M 9 0 4 "" NA12156,NA12878,NA18956,NA19129 nsv517189 6 54004114 54011111 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv669911,nssv677460,nssv653967 M 2026 0 3 "" nsv526401 6 54004114 54020294 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702700 S 2026 0 1 "" nsv523301 6 54004114 54029086 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699041 S 2026 0 1 "" nsv7901 6 54022450 54089039 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14396,nssv14794,nssv14305,nssv14968,nssv13600,nssv17114,nssv14357,nssv14330,nssv16793,nssv15912,nssv16521,nssv16483,nssv14342,nssv14956,nssv16467,nssv15186,nssv17220,nssv15638,nssv14969,nssv13972,nssv14587,nssv13399,nssv15421 M 31 23 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA10839,NA10863,NA11830,NA12155,NA12802,NA18502,NA18504,NA18517,NA18552,NA18563,NA18572,NA18853,NA18860,NA18942,NA18972,NA18980,NA19007,NA19132,NA19144,NA19173,NA19221,NA19240 dgv119n17 6 54032656 54045782 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv436994,nsv436993 M 60 0 2 "" NA10857,NA12752 esv34853 6 54032656 54085408 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6979426,essv6986864,essv6979427,essv6979428,essv6979429 M 771 1 0 "" NA18552 nsv508407 6 54033491 54038601 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617518,nssv618790 M 4 0 2 "" CHM,NA10860 essv8257 6 54059816 54081729 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19153 essv5979 6 54059816 54115308 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18552 nsv507330 6 54182852 54188852 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617706,nssv621836,nssv622969,nssv620341 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv528901 6 54398292 54445089 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705585 S 2026 1 0 "" nsv462946 6 54511756 54548592 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538998 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00951 nsv348463 6 54664395 54664729 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367041 M 24 "" nsv437968 6 54759315 54768204 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv468775,nssv468773,nssv468776,nssv468778,nssv468771,nssv468777,nssv468770,nssv468772 M 269 0 8 Samples from several populations that are part of the HapMap project. "" NA07348,NA07357,NA19128,NA19129,NA19141,NA19142,NA19209,NA19211 nsv5308 6 54849405 54883275 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv551 S 9 1 0 "" NA19240 nsv5309 6 54942930 54963688 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6067 S 9 0 1 "" NA12156 nsv441998 6 54956414 54958101 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv348632 6 54972338 54972664 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367210 M 24 "" nsv527613 6 55279413 55279801 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704078 S 2026 0 1 "" nsv462948 6 55346050 55476774 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv538999 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00942 nsv5311 6 55367349 55412004 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8250 S 9 0 1 "" NA12156 nsv349134 6 55449949 55450079 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367712 M 24 "" nsv526284 6 55581253 55594085 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702563 S 2026 0 1 "" nsv830665 6 55863519 56028178 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445412 S 95 0 1 "" nsv5312 6 55892950 55938010 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8251 S 9 0 1 "" NA12156 nsv526703 6 55918441 56131770 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703042 S 2026 0 1 "" nsv442000 6 55934114 55951619 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv526771 6 55954486 56002094 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703123 S 2026 0 1 "" nsv349404 6 56183919 56183968 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367982 M 24 "" nsv5313 6 56200305 56201119 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2725 S 9 1 0 "" NA18555 nsv830666 6 56351702 56527558 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445413 S 95 1 0 "" nsv5314 6 56644449 56677960 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4917 S 9 1 0 "" NA19129 nsv508408 6 56843640 56881244 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617519 S 4 0 1 "" CHM nsv5315 6 56860001 56906720 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv552 S 9 0 1 "" NA19240 nsv349337 6 57006447 57006506 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367915 M 24 "" nsv526143 6 57025497 57062398 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702398 S 2026 0 1 "" nsv350038 6 57061711 57068083 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368616 M 24 "" nsv5316 6 57075452 57110519 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv553 S 9 1 0 "" NA19240 nsv462949 6 57081861 57206932 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv539000 S 1557 0 1 "" 1780862206_A nsv528165 6 57212225 57238533 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704714 S 2026 0 1 "" nsv522084 6 57267994 57273907 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694054 S 2026 0 1 "" dgv1956e1 6 57292500 57670563 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv12365,esv264 M 271 0 0 "" NA19138 nsv528053 6 57357936 57396889 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704586 S 2026 0 1 "" nsv818418 6 57357936 57396889 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417538 S 112 1 0 "" NA10863 nsv515916 6 57407051 58183439 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv674856,nssv665299,nssv685995,nssv695417,nssv688375,nssv695845,nssv697427 M 2026 5 2 "" nsv510916 6 57415421 57465009 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621589 S 4 0 0 "" NA15510 nsv349821 6 57419061 57419175 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368399 M 24 "" nsv510030 6 57430418 57436418 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624001,nssv622113 M 4 0 2 "" NA10860,NA18994 nsv510031 6 57451995 57457995 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624002,nssv622114 M 4 0 2 "" NA10860,NA18994 nsv348886 6 57459000 57459061 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367464 M 24 "" nsv5317 6 57489119 57529716 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv554,nssv2592,nssv3440,nssv4918 M 9 4 0 "" NA12878,NA18555,NA19129,NA19240 nsv349838 6 57489825 57490058 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368416 M 24 "" nsv510900 6 57497034 57547730 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621590 S 4 0 0 "" NA15510 nsv510032 6 57498419 57504419 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622115,nssv624003 M 4 0 2 "" NA10860,NA18994 nsv510033 6 57520063 57526063 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622116,nssv624004 M 4 0 2 "" NA10860,NA18994 nsv507331 6 57530186 57536186 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622971,nssv621837 M 4 2 0 "" NA10860,NA18994 nsv348789 6 57531028 57537079 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367367 M 24 "" nsv348976 6 57544040 57551692 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367554 M 24 "" nsv5318 6 57566113 57585328 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8252 S 9 0 1 "" NA12156 dgv754n27 6 57643552 58183439 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv462953,nsv462954,nsv462952 M 1557 3 0 "" HGDP00540,HGDP00925,HGDP01379 nsv462955 6 57643552 58878583 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv539006 S 1557 1 0 "" 1782681080_A nsv510918 6 57672389 58262429 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621591,nssv622375,nssv624307 M 4 0 0 "" NA10860,NA15510,NA18994 nsv348901 6 57681846 57681846 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367479 M 24 "" nsv5319 6 57703789 57746879 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3441,nssv2593 M 9 0 2 "" NA12878,NA18555 dgv120n17 6 57726399 57740953 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv436997,nsv436995,nsv436996 M 60 0 3 "" NA10835,NA10854,NA12740 nsv349257 6 57726643 57726841 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367835 M 24 "" esv2752127 6 57785800 58147200 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6985490,essv6981141 M 771 1 0 "" BEC_358 nsv349153 6 57841688 57841783 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367731 M 24 "" nsv349944 6 57846571 57846680 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368522 M 24 "" nsv469799 6 58050529 58192443 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649820 M 265 0 0 Samples from several populations that are part of the HapMap project. "" nsv7381 6 58154475 62176586 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2594,nssv9690,nssv11127,nssv555,nssv6068,nssv9428,nssv4919 M 9 0 0 "" NA12156,NA15510,NA18507,NA18517,NA18555,NA19129,NA19240 nsv821647 6 58175273 58786186 CNV Loss Sebat_et_al_2004 15273396 ROMA Custom Nimblegen photoprint 85000 probe ROMA oligo array nssv1421187 S 31 0 1 "" nsv523720 6 58183439 58878583 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699534 S 2026 1 0 "" nsv7902 6 58195358 58260307 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16823,nssv17144,nssv15942,nssv13331,nssv13630 M 31 2 3 Samples from several populations that are part of the HapMap project. "" NA12802,NA12872,NA18502,NA18517,NA18972 nsv830667 6 58251869 58366665 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445414 S 95 1 0 "" nsv5320 6 58252170 58262904 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2595,nssv10501 M 9 2 0 "" NA18555,NA18956 nsv7904 6 58296123 58299140 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16513 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18504 nsv7905 6 58325965 58342728 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15972 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18502 nsv7906 6 58351632 58378032 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15481,nssv15216,nssv13660,nssv14986,nssv15609,nssv16853,nssv15668 M 31 0 7 Samples from several populations that are part of the HapMap project. "" NA10863,NA12155,NA12740,NA12802,NA18552,NA18972,NA19240 nsv462956 6 58380582 58465653 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv539007 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00939 nsv527797 6 58386857 58476590 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704289 S 2026 1 0 "" nsv462957 6 58393879 58878583 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv539008 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00208 nsv517736 6 58412859 58416914 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv670177,nssv661945,nssv653046 M 2026 0 3 "" dgv1957e1 6 58442668 58587658 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv21047,esv246 M 271 0 0 "" NA06991 nsv830668 6 58483534 58667977 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445415 S 95 0 1 "" nsv5322 6 58511449 58538366 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3442 S 9 0 1 "" NA12878 nsv442001 6 58534011 58535028 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv349573 6 58634207 58634275 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368151 M 24 "" nsv516156 6 58675121 58715776 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv678021,nssv666527,nssv690084,nssv686849,nssv691401,nssv686652,nssv673692,nssv686188,nssv659026,nssv674422,nssv660803,nssv666802,nssv690417,nssv654298,nssv690113,nssv670259,nssv656710,nssv677104 M 2026 0 18 "" nsv469832 6 58720760 58881661 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649853 M 265 0 0 Samples from several populations that are part of the HapMap project. "" nsv527572 6 58822896 58878583 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704033 S 2026 0 1 "" nsv520179 6 61949597 63068811 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703677,nssv699535,nssv704898,nssv675117,nssv705147,nssv697923,nssv695525,nssv688376,nssv661390,nssv674857 M 2026 3 7 "" nsv830669 6 61953431 61972045 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445420,nssv1445419,nssv1445416,nssv1445417 M 95 0 4 "" nsv462959 6 62021131 62098264 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv539009 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01379 dgv755n27 6 62021131 62530088 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv462960,nsv462964 M 1557 2 0 "" 1782681080_A,HGDP00540 nsv350085 6 62028721 62028818 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368663 M 24 "" esv2752128 6 62030184 62153725 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6985491,essv6981142 M 771 1 0 "" BEC_358 nsv462965 6 62041993 62118323 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv539013 S 1557 0 1 "" 1782681096_A nsv830671 6 62055990 62239172 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445421 S 95 1 0 "" nsv5323 6 62072801 62079782 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2726 S 9 1 0 "" NA18555 nsv5324 6 62091095 62097321 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8253 S 9 0 1 "" NA12156 nsv349164 6 62103404 62103561 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367742 M 24 "" nsv821648 6 62143728 62415691 CNV Loss Sebat_et_al_2004 15273396 ROMA Custom Nimblegen photoprint 85000 probe ROMA oligo array nssv1421188 S 31 0 1 "" nsv7907 6 62334618 62344961 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13361,nssv14372,nssv15511,nssv14475,nssv14360,nssv13690 M 31 0 6 Samples from several populations that are part of the HapMap project. "" NA07029,NA12802,NA12872,NA18537,NA18853,NA19240 nsv462966 6 62718338 62748639 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv539014 S 1557 1 0 "" NINDS_216 esv33001 6 62982682 62986171 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98478 S 51 0 1 "" 22352 nsv442002 6 62983601 62986263 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv382n21 6 63102106 63102769 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv522283,nsv526293 M 2026 0 2 "" nsv462967 6 63127022 63231252 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv539015 S 1557 0 1 "" NINDS_125 nsv818419 6 63218749 63231252 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418461 S 112 0 1 "" NA19193 nsv821649 6 63569838 63946210 CNV Loss Sebat_et_al_2004 15273396 ROMA Custom Nimblegen photoprint 85000 probe ROMA oligo array nssv1421189 S 31 0 1 "" nsv509136 6 63589193 63665312 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620852 S 4 1 0 "" NA15510 nsv349295 6 63598923 63598923 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367873 M 24 "" nsv7908 6 63655444 63658683 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14853,nssv14456,nssv14002,nssv13391 M 31 0 4 Samples from several populations that are part of the HapMap project. "" NA07048,NA12872,NA18942,NA19007 nsv7909 6 63665283 63668082 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16551 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18860 nsv830672 6 63731296 63833388 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445422 S 95 0 1 "" nsv508409 6 63763923 63781827 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622549 S 4 0 1 "" NA18994 dgv1958e1 6 63764581 64043848 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv534,essv3519 M 271 0 0 "" NA18965 nsv507332 6 63766054 63772054 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617707 S 4 1 0 "" CHM esv34515 6 63781300 63907733 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6987022,essv6980162,essv6980161,essv6980160 M 771 1 0 "" NA18965 essv2734 6 63781337 63929207 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18965 nsv818420 6 63784736 63894599 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417500 S 112 1 0 "" NA18965 nsv5325 6 63791668 63836475 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8254 S 9 0 1 "" NA12156 nsv5326 6 63809731 63842841 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4920 S 9 1 0 "" NA19129 nsv507333 6 63817385 63823385 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621838,nssv617708,nssv622972 M 4 3 0 "" CHM,NA10860,NA18994 nsv830673 6 63891522 63997136 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445423 S 95 1 0 "" essv2741 6 63956681 63961313 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18965 esv33308 6 63977316 64014338 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100894 S 51 0 1 "" 21656 nsv517212 6 63989580 64006264 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv676944,nssv654021,nssv665239,nssv675151 M 2026 0 4 "" nsv510034 6 64282363 64288363 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622118 S 4 0 1 "" NA10860 nsv830674 6 64413371 64593760 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445424,nssv1445425 M 95 1 1 "" nsv462968 6 65029395 65076644 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv539016 S 1557 0 1 "" NINDS_222 nsv5327 6 65040476 65082479 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv556,nssv9891,nssv4921,nssv3443,nssv10502 M 9 5 0 "" NA12878,NA18507,NA18956,NA19129,NA19240 nsv510901 6 65054349 65074972 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618651,nssv624308 M 4 0 0 "" CHM,NA18994 nsv507334 6 65055267 65061267 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621839 S 4 1 0 "" NA10860 nsv524118 6 65066483 65119571 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699996 S 2026 0 1 "" nsv830675 6 65092091 65280065 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445426 S 95 1 0 "" nsv462971 6 65310924 65400187 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv539017 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01074 nsv462972 6 65322828 65413104 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv539018 S 1557 0 1 "" 1780854576_A nsv508410 6 65398490 65416742 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617521,nssv619974 M 4 0 2 "" CHM,NA15510 nsv5328 6 65474616 65519877 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8256 S 9 0 1 "" NA12156 esv33692 6 65475826 65476004 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100023 S 51 0 1 "" 22086 nsv462976 6 65586298 65642132 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv539020 S 1557 0 1 "" 1780862540_A nsv462977 6 65613076 65738304 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv539021 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01294 nsv442983 6 65768120 65770513 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv515733 6 65881300 65975530 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv655371,nssv664619 M 2026 0 2 "" nsv348880 6 65958943 65968428 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367458 M 24 "" nsv521670 6 65978654 66065824 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698288 S 2026 0 1 "" nsv516417 6 66009247 66140501 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv668234,nssv699224,nssv670328 M 2026 0 3 "" nsv462980 6 66096322 66140501 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv539022 S 1557 0 1 "" 1787431198_A nsv818421 6 66107518 66109396 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417430 S 112 1 0 "" NA18952 nsv520449 6 66129263 66148072 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697428 S 2026 0 1 "" nsv462983 6 66148072 66182444 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv539023 S 1557 0 1 "" 1780862309_A dgv756n27 6 66172375 66289413 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv462985,nsv462986 M 1557 0 2 "" 1780862042_A,HGDP00146 nsv528039 6 66213812 66243828 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704571 S 2026 1 0 "" nsv818423 6 66213812 66243828 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416446 S 112 1 0 "" NA18516 nsv524573 6 66307678 66310805 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700529 S 2026 0 1 "" dgv223n6 6 66316749 66318754 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv350066,nsv348895 M 24 "" nsv516274 6 66366036 66383666 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv693299,nssv659996,nssv684373,nssv697487,nssv656021,nssv666859,nssv680379,nssv686189,nssv661236,nssv652708,nssv660804,nssv690485,nssv660694 M 2026 0 13 "" dgv757n27 6 66366409 66397153 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv462987,nsv462988 M 1557 0 2 "" NINDS_17,NINDS_46 nsv462989 6 66402563 66431525 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv539029 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01416 dgv1959e1 6 66411109 66510269 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv739,esv1073 M 271 0 0 "" NA19003 nsv5329 6 66430939 66493678 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3444,nssv11128,nssv2596 M 9 0 3 "" NA12878,NA15510,NA18555 nsv436998 6 66453404 66461649 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv466879 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA07048 nsv508411 6 66453560 66469548 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619975 S 4 0 1 "" NA15510 nsv7910 6 66454046 66462667 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14868,nssv14486,nssv14883,nssv15016,nssv16883,nssv14244,nssv16497,nssv14032,nssv14505 M 31 0 9 Samples from several populations that are part of the HapMap project. "" NA07048,NA18537,NA18552,NA18564,NA18942,NA18972,NA18975,NA19007,NA19132 nsv442984 6 66456258 66460573 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv1960e1 6 66460447 66510269 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv6557,essv18026 M 271 0 0 "" NA12878,NA18624 nsv462990 6 66547777 66655659 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv539030 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00818 nsv5330 6 66603156 66629333 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2727 S 9 1 0 "" NA18555 nsv509137 6 66618741 66618741 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620853 S 4 1 0 "" NA15510 nsv462991 6 66679067 66712818 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv539031 S 1557 0 1 "" 1780854341_A nsv818424 6 66680970 66685400 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417535 S 112 1 0 "" NA18968 nsv462992 6 66685400 66878213 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv539032 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00571 nsv462993 6 66692925 66776318 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv539033 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00562 nsv830676 6 66807995 66989634 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445427 S 95 0 1 "" nsv521413 6 66833289 66837911 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698022 S 2026 1 0 "" esv2422329 6 66905974 66973527 CNV Deletion Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161278 S 181 0 1 "" ND01684 nsv830677 6 66945485 67107865 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445428 S 95 0 1 "" dgv1961e1 6 66961128 67117117 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1417,essv24186 M 271 0 0 "" NA07056 nsv7911 6 66966949 66969000 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16002 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18502 nsv510035 6 67000384 67006384 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621285,nssv618237 M 4 0 2 "" CHM,NA15510 nsv462994 6 67042380 67105019 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv539034 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00526 dgv1962e1 6 67043118 67117117 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv18032,essv22290,essv21949,essv22797,essv19369 M 271 0 0 "" NA07000,NA07019,NA12753,NA12762,NA12878 dgv758n27 6 67058287 67105019 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv462998,nsv463000,nsv463002,nsv463001 M 1557 0 4 "" 1780862516_A,NINDS_183,NINDS_217,NINDS_227 nsv515685 6 67065007 67111682 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv683513,nssv693269,nssv668999,nssv683569,nssv655617,nssv666503,nssv691427,nssv656749,nssv658056,nssv691602,nssv679669,nssv671080,nssv663418,nssv667968,nssv661993,nssv663682,nssv677627,nssv654140,nssv693522,nssv671096,nssv678229,nssv691730,nssv668392,nssv651716,nssv669258,nssv659042,nssv683843,nssv680130,nssv682118,nssv681266,nssv671452,nssv671199,nssv690373,nssv658983,nssv672955,nssv675859,nssv664695,nssv671332,nssv656763,nssv669074,nssv692765,nssv661968,nssv664324,nssv689804,nssv665300,nssv664387,nssv679386,nssv687991,nssv661661,nssv653471,nssv687372,nssv670743,nssv689435,nssv689714,nssv686278,nssv658793,nssv671836,nssv657705,nssv682245,nssv691172,nssv658354,nssv684340,nssv674663,nssv681048,nssv691338,nssv681656,nssv655248,nssv662437,nssv661257,nssv651986,nssv677663,nssv678335,nssv676524,nssv679364,nssv666738,nssv685171,nssv678604,nssv689344,nssv672162,nssv685543,nssv673072,nssv657553,nssv679344,nssv688430,nssv680804,nssv653584,nssv688192,nssv679240,nssv658614,nssv661885,nssv666265,nssv656926,nssv680472,nssv688645,nssv689888,nssv683527,nssv653668,nssv686471,nssv675299,nssv685003,nssv681586,nssv665311,nssv686009,nssv665736,nssv661428,nssv667983,nssv659456,nssv669126,nssv653167,nssv687708,nssv693793,nssv692977,nssv681944,nssv682645,nssv661053,nssv662155,nssv672557,nssv667806,nssv672146,nssv664265,nssv657924,nssv692223,nssv689366,nssv672601,nssv679528,nssv653912,nssv678373,nssv652030,nssv683230,nssv681672,nssv669023,nssv662498,nssv676273,nssv654875,nssv659621,nssv654531,nssv667737,nssv658920,nssv683110,nssv670922,nssv663061,nssv663158,nssv688247,nssv678380,nssv682939,nssv681932,nssv678994,nssv659510,nssv680984,nssv668441,nssv665059,nssv659931,nssv653125,nssv675912,nssv679785,nssv662002,nssv662993,nssv654937,nssv670986,nssv658860,nssv683389,nssv683290,nssv687677,nssv656063,nssv664582,nssv688816,nssv689188,nssv689156,nssv668647,nssv682441,nssv657389,nssv668256,nssv683475,nssv664398,nssv654508,nssv684493,nssv677330,nssv665276,nssv690690,nssv659674,nssv661237,nssv663990,nssv681436,nssv670424,nssv688977,nssv688091,nssv658808,nssv667509,nssv679986,nssv655221,nssv675392,nssv685258,nssv677756,nssv670826,nssv668742,nssv690664,nssv656642,nssv672231,nssv652542,nssv667716,nssv683829,nssv682776,nssv662841,nssv665084,nssv653247,nssv661182,nssv686688,nssv682786,nssv691359,nssv656312,nssv679701,nssv685929,nssv670810,nssv683729,nssv684843,nssv684202,nssv691085,nssv673642 M 2026 0 218 "" esv33900 6 67065247 67105664 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101500,essv98725,essv97535,essv100906,essv98297,essv96929,essv97427,essv93724,essv97138,essv100100,essv99333,essv98510 M 51 7 5 "" 21603,21606,21616,21656,21772,21817,21879,21972,22075,22086,22275,22352 essv25066 6 67065532 67106320 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12892 nsv433234 6 67074215 67105019 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463115 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA12878 dgv759n27 6 67075448 67093085 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv463109,nsv463003 M 1557 0 2 "" 1780862311_A,NINDS_88 dgv760n27 6 67075448 67105019 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv463036,nsv463063,nsv463010,nsv463064,nsv463040,nsv463081,nsv463018,nsv463113,nsv463067,nsv463035,nsv463112,nsv463094,nsv463093,nsv463089,nsv463053,nsv463087,nsv463069,nsv463100,nsv463014,nsv463058,nsv463083,nsv463052,nsv463121,nsv463008,nsv463068,nsv463011,nsv463119,nsv463031,nsv463019,nsv463088,nsv463072,nsv463032,nsv463080,nsv463090,nsv463076,nsv463027,nsv463034,nsv463098,nsv463042,nsv463030,nsv463114,nsv463015,nsv463082,nsv463038,nsv463122,nsv463066,nsv463041,nsv463054,nsv463118,nsv463077,nsv463085,nsv463033,nsv463074,nsv463120,nsv463057,nsv463071,nsv463013,nsv463004,nsv463070,nsv463116,nsv463075,nsv463091,nsv463045,nsv463005,nsv463037,nsv463048,nsv463051,nsv463096,nsv463097,nsv463055,nsv463059,nsv463044,nsv463092,nsv463043,nsv463046,nsv463049,nsv463007,nsv463078,nsv463065,nsv463012,nsv463009,nsv463111,nsv463086,nsv463016,nsv463060,nsv463079,nsv463047,nsv463115,nsv463110,nsv463123,nsv463099,nsv463029,nsv463056,nsv463020 M 1557 0 94 "" 1780846029_A,1780854016_A,1780854039_A,1780854065_A,1780854117_A,1780854127_A,1780854205_A,1780854384_A,1780854480_A,1780854568_A,1780854585_A,1780862019_A,1780862021_A,1780862127_A,1780862165_A,1780862175_A,1780862252_A,1780862261_A,1780862276_A,1780862294_A,1780862304_A,1780862380_A,1780862381_A,1780862402_A,1780862433_A,1780862456_A,1780862518_A,1782681023_A,1782681110_A,1782681208_A,1782681274_A,1782681277_A,1782681313_A,1798860108_A,1798860166_A,1798860277_A,1798860372_A,1798860592_A,HGDP00021,HGDP00033,HGDP00037,HGDP00045,HGDP00049,HGDP00080,HGDP00092,HGDP00145,HGDP00216,HGDP00237,HGDP00323,HGDP00512,HGDP00517,HGDP00522,HGDP00557,HGDP00559,HGDP00637,HGDP00644,HGDP00654,HGDP00675,HGDP00676,HGDP00685,HGDP00688,HGDP00701,HGDP00727,HGDP00862,HGDP01064,HGDP01065,HGDP01071,HGDP01074,HGDP01167,HGDP01173,HGDP01275,HGDP01278,HGDP01360,NINDS_100,NINDS_109,NINDS_149,NINDS_202,NINDS_205,NINDS_207,NINDS_225,NINDS_235,NINDS_243,NINDS_251,NINDS_29,NINDS_34,NINDS_37,NINDS_5,NINDS_67,NINDS_74,NINDS_79,NINDS_80,NINDS_86,NINDS_89,NINDS_90 nsv818425 6 67075448 67105019 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416160,nssv1417030,nssv1416159 M 112 0 3 "" NA07000,NA12878,NA12892 dgv761n27 6 67075448 67116910 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv463102,nsv463101,nsv463103 M 1557 0 3 "" 1780854130_A,1780854467_A,1780862437_A dgv762n27 6 67076651 67086432 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv463105,nsv463107,nsv463108 M 1557 0 3 "" 1780862530_A,1798860114_A,HGDP00279 dgv763n27 6 67083141 67105019 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv463130,nsv463132,nsv463126,nsv463124,nsv463131,nsv463129,nsv463127,nsv463125 M 1557 0 8 "" 1780854288_A,1780862379_A,1780862391_A,HGDP00583,HGDP00600,HGDP00679,HGDP00699,HGDP01073 dgv121n17 6 67084250 67101152 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv436999,nsv437000 M 60 0 2 "" NA12753,NA12878 nsv463133 6 67086432 67111682 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv539163 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00732 nsv442985 6 67097634 67099913 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv463134 6 67179851 67210709 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv539164 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00090 esv2422379 6 67278935 67371216 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161409 S 181 1 0 "" ND02296 nsv527461 6 67328937 67331421 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703904 S 2026 1 0 "" nsv463135 6 67424871 67505685 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv539165 S 1557 1 0 "" NINDS_73 nsv5331 6 67439946 67484830 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8257 S 9 0 1 "" NA12156 nsv463136 6 67498435 67545704 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv539166 S 1557 0 1 "" NINDS_183 nsv830678 6 67508929 67668616 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445430 S 95 1 0 "" nsv522182 6 67558222 67615042 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694955 S 2026 1 0 "" dgv1963e1 6 67721287 67745004 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv7257,esv1170 M 271 0 0 "" NA18635 nsv463140 6 67761542 68034047 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv539168 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00185 nsv830679 6 67809201 67971260 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445431 S 95 0 1 "" nsv518341 6 67814351 67814599 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695770 S 2026 0 1 "" nsv463141 6 67814351 67913697 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv539169 S 1557 0 1 "" NINDS_89 nsv437510 6 67818167 67832158 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467391 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18521 nsv5333 6 67819083 67851545 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10503 S 9 1 0 "" NA18956 dgv1964e1 6 67821780 67861137 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv17996,esv1137 M 271 0 0 "" NA12005 nsv507335 6 67835982 67841982 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620342,nssv621840,nssv622973 M 4 3 0 "" NA10860,NA15510,NA18994 nsv7912 6 67844907 67851133 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15046 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18552 nsv515832 6 67910211 67913697 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv674483,nssv687272,nssv664932 M 2026 3 0 "" nsv527154 6 68022441 68053373 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703545 S 2026 1 0 "" nsv525523 6 68033864 68068840 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701657 S 2026 0 1 "" nsv463142 6 68121761 68159040 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv539170 S 1557 0 1 "" 1780862003_A essv13486 6 68213162 68355095 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19192 esv671 6 68213162 68583232 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent + Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 "" esv34319 6 68272068 68474413 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6987793,essv6980443,essv6980444,essv6980445 M 771 0 1 "" NA19192 nsv515700 6 68284933 68492592 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv659404,nssv664459,nssv657793,nssv668687,nssv656342,nssv680072 M 2026 0 6 "" nsv818426 6 68288763 68492592 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418462 S 112 0 1 "" NA19192 nsv7913 6 68292072 68305854 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16527 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19132 nsv7915 6 68308129 68327556 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17250 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19221 essv11411 6 68326677 68474413 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19192 nsv507336 6 68335175 68341175 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620343,nssv621841,nssv622974,nssv617709 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv7916 6 68342940 68363019 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16032,nssv17280,nssv16557 M 31 0 3 Samples from several populations that are part of the HapMap project. "" NA18502,NA19132,NA19221 nsv5334 6 68362387 68381157 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv557 S 9 1 0 "" NA19240 nsv7917 6 68407338 68409366 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14285 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA10847 nsv5335 6 68443464 68477275 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv558 S 9 1 0 "" NA19240 essv19860 6 68474413 68583232 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12234 esv34754 6 68474413 68589700 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6978752,essv6978753,essv6986696 M 771 1 0 "" NA12234 nsv528362 6 68492592 68543635 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704949 S 2026 1 0 "" nsv516610 6 68502776 68506151 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv661429,nssv687945,nssv689522,nssv673805,nssv687035,nssv655317,nssv676945,nssv655695,nssv669520,nssv683869 M 2026 0 10 "" nsv463143 6 68502776 68509544 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv539171 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00912 nsv463144 6 68526807 68620049 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv539172 S 1557 0 1 "" 1780854495_A nsv7918 6 68551347 68559308 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16587,nssv15541 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA19132,NA19240 nsv463145 6 68562563 68606194 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv539173 S 1557 0 1 "" 1780862585_A nsv463146 6 68589686 68658126 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv539174 S 1557 0 1 "" 1780862310_A nsv520584 6 68620049 68701040 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv672830,nssv674959 M 2026 2 0 "" nsv521952 6 68785518 68788356 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694721 S 2026 0 1 "" esv2752129 6 68787830 69090289 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6984961,essv6984960,essv6988872,essv6984962,essv6987126 M 771 1 0 "" SPC_20 nsv526692 6 68968975 68995030 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703029 S 2026 0 1 "" nsv526266 6 68987349 68995030 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702539 S 2026 0 1 "" nsv5336 6 69039990 69068886 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4922,nssv6069 M 9 2 0 "" NA12156,NA19129 nsv463147 6 69242381 69298741 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv539175 S 1557 1 0 "" 1780862076_A nsv830680 6 69248935 69407824 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445432 S 95 1 0 "" nsv818427 6 69291821 69298741 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415900 S 112 1 0 "" NA11995 nsv515885 6 69291821 69306105 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv688753,nssv680361,nssv658939,nssv665182,nssv659060,nssv665156,nssv681383,nssv668222,nssv669138,nssv666907,nssv689878,nssv666167,nssv691885,nssv662218,nssv670396,nssv663503,nssv678104,nssv685129,nssv671310,nssv660041,nssv698484,nssv671675,nssv662800,nssv683600,nssv683964,nssv677628,nssv658515,nssv660911,nssv677331,nssv691951,nssv671244,nssv668822,nssv667475,nssv673806,nssv687484,nssv652807,nssv692563,nssv689345,nssv670355,nssv663159,nssv675587,nssv693390,nssv667161,nssv686190,nssv680894,nssv679329,nssv660851,nssv680061,nssv688177,nssv679448,nssv654485,nssv675183,nssv664189,nssv689686,nssv679258,nssv693946,nssv704319,nssv664659,nssv675152,nssv652908,nssv692499,nssv691036,nssv684914,nssv656790,nssv666570,nssv680523,nssv686252,nssv652264,nssv680605,nssv684551,nssv677798,nssv668931,nssv681787,nssv690486,nssv658724,nssv657513,nssv693357,nssv669982 M 2026 26 52 "" dgv224n6 6 69428106 69428171 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv348881,nsv349406 M 24 "" nsv5337 6 69631844 69637795 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8258 S 9 0 1 "" NA12156 nsv528106 6 69638712 69667002 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704647 S 2026 1 0 "" dgv1965e1 6 69652213 69655072 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv12159,esv374 M 271 0 0 "" NA19101 dgv383n21 6 69675201 69695225 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv525968,nsv519494 M 2026 0 4 "" nsv5338 6 69727422 69758081 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2598 S 9 0 1 "" NA18555 nsv517304 6 69744886 69747288 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv655920,nssv693645,nssv662636,nssv662219,nssv672850,nssv656576,nssv673763,nssv683528,nssv659949,nssv676274,nssv654832,nssv678423,nssv655845,nssv660526,nssv686040,nssv654269,nssv657029,nssv690168,nssv667831,nssv664583,nssv665240,nssv658794,nssv692224,nssv685930,nssv691274,nssv664635,nssv675118,nssv659094,nssv654333,nssv681145,nssv677969,nssv678703,nssv681449,nssv652729,nssv658311,nssv669075 M 2026 0 36 "" nsv463148 6 69802775 69838507 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv539176 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00635 nsv526130 6 69908537 69979048 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702384 S 2026 1 0 "" nsv5339 6 69926844 69959001 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv559 S 9 1 0 "" NA19240 dgv384n21 6 70064171 70086701 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv527172,nsv515657 M 2026 0 27 "" nsv5340 6 70212880 70257523 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8259 S 9 0 1 "" NA12156 nsv524983 6 70271565 70274382 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701012 S 2026 0 1 "" nsv527593 6 70271565 70274382 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704054 S 2026 1 0 "" nsv521077 6 70271565 70336066 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697772 S 2026 1 0 "" dgv385n21 6 70272983 70290429 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv528131,nsv516477 M 2026 0 14 "" nsv521380 6 70272983 70318028 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697989 S 2026 0 1 "" dgv386n21 6 70313042 70318028 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv529047,nsv528668 M 2026 0 2 "" nsv830682 6 70454572 70649604 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445433 S 95 0 1 "" nsv463151 6 70681887 70750883 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv539178 S 1557 0 1 "" 1780862194_A nsv525985 6 70784923 70823225 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702205 S 2026 0 1 "" nsv830683 6 70800143 70997911 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445434 S 95 1 0 "" nsv507337 6 70949093 70955093 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621842,nssv617710,nssv622975 M 4 3 0 "" CHM,NA10860,NA18994 nsv524328 6 71018554 71615526 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700234 S 2026 1 0 "" nsv525542 6 71646230 71656608 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701679 S 2026 1 0 "" nsv527265 6 71924198 71959377 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703672 S 2026 0 1 "" nsv526921 6 71946958 72006963 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703285 S 2026 1 0 "" nsv5341 6 71981794 72013657 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8260 S 9 0 1 "" NA12156 nsv7382 6 72133581 72384023 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6070 S 9 0 0 "" NA12156 nsv5342 6 72147333 72169445 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3445 S 9 1 0 "" NA12878 nsv830684 6 72151563 72339405 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445435 S 95 1 0 "" nsv5344 6 72256440 72263101 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10504 S 9 1 0 "" NA18956 nsv830685 6 72300728 72467478 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445438,nssv1445437,nssv1445436 M 95 3 0 "" nsv830686 6 72393617 72590988 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445439 S 95 1 0 "" nsv5345 6 72426595 72459842 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2599 S 9 1 0 "" NA18555 nsv830687 6 72558108 72736281 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445441 S 95 1 0 "" nsv507338 6 72701637 72707637 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622976,nssv621843,nssv617711,nssv620345 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv5346 6 72711662 72720457 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8261 S 9 0 1 "" NA12156 nsv5347 6 72847084 72873361 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8262,nssv11129 M 9 2 0 "" NA12156,NA15510 nsv509139 6 72851533 72858232 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620854 S 4 1 0 "" NA15510 nsv286 6 72854234 72873361 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv286 S 1 1 0 "" NA15510 nsv830688 6 72901830 73076892 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445442 S 95 1 0 "" nsv5348 6 72917793 72944916 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6071,nssv3446 M 9 0 2 "" NA12156,NA12878 nsv349724 6 72953920 72963004 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368302 M 24 "" nsv507339 6 72972503 72978503 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622977 S 4 1 0 "" NA18994 nsv5349 6 73161511 73197013 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3447 S 9 1 0 "" NA12878 nsv510036 6 73198209 73204209 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622119,nssv618238 M 4 0 2 "" CHM,NA10860 nsv524673 6 73244812 73250711 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700644 S 2026 0 1 "" nsv463152 6 73426460 73463611 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv539179 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01352 dgv86n68 6 73442278 73631025 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH nsv830690,nsv830689 M 95 3 0 "" nsv510037 6 73489649 73495649 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622120,nssv624006 M 4 0 2 "" NA10860,NA18994 nsv830691 6 73587699 73800369 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445446 S 95 1 0 "" nsv349877 6 73707787 73707837 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368455 M 24 "" nsv521957 6 73740496 73744473 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694726 S 2026 1 0 "" nsv519218 6 73902020 73919577 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696707 S 2026 1 0 "" nsv525926 6 73912675 73913132 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702130 S 2026 0 1 "" nsv518874 6 74071189 74098145 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696332 S 2026 0 1 "" nsv527029 6 74103723 74105544 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703404 S 2026 1 0 "" nsv830693 6 74106063 74272801 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445447,nssv1445448 M 95 0 2 "" nsv518515 6 74178876 74182805 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695956 S 2026 0 1 "" nsv5350 6 74278716 74323809 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8263 S 9 0 1 "" NA12156 nsv463153 6 74285979 74347012 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv539180 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00520 nsv527357 6 74309987 74382124 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703786 S 2026 1 0 "" nsv349088 6 74426240 74428428 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367666 M 24 "" esv33462 6 74436452 74438679 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv94057,essv99747 M 51 0 2 "" 21802,22217 nsv463154 6 74468769 74832624 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv539181 S 1557 1 0 "" 1780862347_A nsv348528 6 74477984 74478289 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367106 M 24 "" nsv527906 6 74525581 74531768 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704412 S 2026 0 1 "" nsv528148 6 74525581 74550153 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704695 S 2026 0 1 "" nsv526236 6 74620278 74719628 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702503 S 2026 0 1 "" dgv1966e1 6 74624342 74681784 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv10720,esv1320,essv16179 M 271 0 0 "" NA18506,NA18508 esv34305 6 74628530 74732000 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6986817,essv6979225 M 771 1 0 "" NA18508 esv32624 6 74630950 74636534 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99985 S 51 0 1 "" 22086 nsv508412 6 74635518 74691317 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618791,nssv619976,nssv622550,nssv617522 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 esv34860 6 74636900 74690339 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6979207,essv6979206 M 771 1 0 "" NA18506 nsv5351 6 74646855 74699905 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3448,nssv10505,nssv6072 M 9 0 3 "" NA12156,NA12878,NA18956 nsv7919 6 74648748 74662262 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13720,nssv14898,nssv15076,nssv13459,nssv14335,nssv14535,nssv14516,nssv14998,nssv14315,nssv15639,nssv15246 M 31 1 10 Samples from several populations that are part of the HapMap project. "" NA10847,NA10863,NA12740,NA12802,NA18537,NA18552,NA18564,NA18572,NA18980,NA19007,NA19144 nsv442986 6 74648957 74658138 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" esv33723 6 74649045 74655248 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97553,essv101205,essv100699,essv94124,essv97042,essv95543,essv95299,essv97436,essv94550,essv92685,essv93769,essv96110,essv99872,essv99193,essv97667,essv100415,essv98416,essv96377,essv94160 M 51 0 19 "" 21616,21618,21656,21802,21817,21847,21872,21879,21932,21944,21972,22007,22086,22275,22278,22300,22352,22371,22394 nsv442987 6 74766429 74773741 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv1967e1 6 75018716 75218942 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2642,esv571 M 271 0 0 "" NA18967 esv32636 6 75029906 75030171 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99207 S 51 1 0 "" 22275 esv33511 6 75031290 75031470 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv96960 S 51 1 0 "" 21817 nsv7920 6 75036237 75042808 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16062 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18502 esv32623 6 75039602 75042279 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99587,essv99192 M 51 2 0 "" 22217,22275 nsv7921 6 75086537 75088589 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14365 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18980 esv35015 6 75088057 75210863 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6987733,essv6987734,essv6980186,essv6980185 M 771 0 1 "" NA18967 essv3259 6 75117667 75218942 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18967 nsv510038 6 75154434 75160434 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624007,nssv618239,nssv621286 M 4 0 3 "" CHM,NA15510,NA18994 nsv520746 6 75268266 75748534 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697587 S 2026 1 0 "" nsv830694 6 75302203 75503002 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445449 S 95 1 0 "" nsv507340 6 75396250 75402250 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621844 S 4 1 0 "" NA10860 nsv830695 6 75466376 75639835 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445450 S 95 1 0 "" dgv1968e1 6 75582459 75681971 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv621,essv5075,essv4104,esv1370 M 271 0 0 "" NA18529,NA18570,NA18998 dgv1969e1 6 75582647 75647255 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2704,essv6 M 271 0 0 "" NA18944,NA18945 nsv830696 6 75595036 75791329 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445452 S 95 0 1 "" nsv7922 6 75615505 75617070 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14387,nssv14999 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18563,NA19173 nsv5352 6 75669359 75701604 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv560 S 9 1 0 "" NA19240 nsv7923 6 75676717 75678148 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17174 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18517 nsv830697 6 75819815 75971749 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445454,nssv1445453 M 95 1 1 "" nsv349742 6 76014520 76014838 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368320 M 24 "" nsv830698 6 76025530 76172312 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445455 S 95 1 0 "" nsv348407 6 76249550 76252434 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv366985 M 24 "" nsv5353 6 76262682 76275036 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8264 S 9 0 1 "" NA12156 nsv522814 6 76432041 76462420 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698460 S 2026 0 1 "" nsv5355 6 76723465 76755004 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3449 S 9 1 0 "" NA12878 nsv518093 6 76780460 76793716 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695505 S 2026 0 1 "" nsv5356 6 76907082 76940974 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8265 S 9 1 0 "" NA12156 nsv528612 6 76981958 76983174 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705238 S 2026 0 1 "" nsv5357 6 77067481 77091010 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4923 S 9 0 1 "" NA19129 nsv437511 6 77071229 77096990 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467392 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19129 nsv517585 6 77073066 77088077 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv689523,nssv654119,nssv663222,nssv654735,nssv691402,nssv682713,nssv662579,nssv662220,nssv684037,nssv690924,nssv654652,nssv659487,nssv661770,nssv659288,nssv672431,nssv661581,nssv674441,nssv674065,nssv670178,nssv693708,nssv675393,nssv687096,nssv663406,nssv679652,nssv675515 M 2026 0 25 "" nsv7924 6 77073369 77085808 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14395 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18980 nsv442988 6 77073713 77084327 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv58n64 6 77074879 77081385 CNV Loss Wang_et_al_2007 17921354 SNP_array nsv818429,nsv818428 M 112 0 4 "" NA18944,NA18949,NA18953,NA18978 dgv764n27 6 77074879 77081385 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv463158,nsv463156,nsv463163,nsv463162,nsv463159,nsv463160,nsv463157 M 1557 0 7 "" HGDP00702,HGDP00756,HGDP00857,HGDP00995,HGDP00999,HGDP01003,HGDP01103 nsv433235 6 77074879 77081385 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463116 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA19129 nsv520032 6 77074879 77109051 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697187 S 2026 0 1 "" nsv437969 6 77076267 77078698 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv468780,nssv468779 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA19128,NA19129 nsv5358 6 77129651 77165983 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3450,nssv8266,nssv10506 M 9 0 3 "" NA12156,NA12878,NA18956 nsv508413 6 77153116 77164888 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617523,nssv622551 M 4 0 2 "" CHM,NA18994 nsv830699 6 77168577 77347942 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445459,nssv1445458,nssv1445463,nssv1445457,nssv1445460,nssv1445456,nssv1445461 M 95 5 2 "" nsv830700 6 77302756 77438957 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445464 S 95 1 0 "" nsv517659 6 77357716 77379207 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv684428,nssv654788,nssv664190,nssv692922,nssv691339,nssv652731,nssv659003,nssv665699 M 2026 3 5 "" nsv526827 6 77372507 77396867 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703184 S 2026 0 1 "" nsv463165 6 77374402 77379207 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv539190 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00137 dgv1970e1 6 77474806 77509523 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv21598,essv7499,essv3923 M 271 0 0 "" NA12155,NA18561,NA18970 dgv1971e1 6 77474806 77533382 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv19838,esv1404,essv18914 M 271 0 0 "" NA12234,NA12717 nsv5359 6 77485023 77525871 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9692 S 9 0 1 "" NA18507 nsv7926 6 77493568 77517692 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14565,nssv17204,nssv16543,nssv14455,nssv15136,nssv14546,nssv17310,nssv13780,nssv15669,nssv16581,nssv14390,nssv14274,nssv16617,nssv13451,nssv14928,nssv13489,nssv14447,nssv14432,nssv14345,nssv15571,nssv16122,nssv14617,nssv16913,nssv14062,nssv15028 M 31 23 2 Samples from several populations that are part of the HapMap project. "" NA07029,NA10847,NA11830,NA12740,NA12802,NA12872,NA18502,NA18504,NA18517,NA18537,NA18552,NA18563,NA18564,NA18572,NA18853,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19144,NA19221,NA19240 esv32939 6 77496501 77510012 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101579,essv98675,essv97566,essv101228,essv96903,essv95699,essv95552,essv94622,essv93622,essv93758,essv96176,essv97262,essv97714,essv100354,essv98354,essv96366,essv94300 M 51 0 16 "" 21603,21606,21616,21618,21817,21841,21847,21932,21972,22007,22075,22278,22300,22352,22371,22394 dgv1972e1 6 77496587 77509523 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv10183,essv24205,essv23276,essv17867,essv25156,essv20530,essv19746,essv23286,essv16386,essv22732,essv21580,essv24954,essv19110,essv12110,essv9296,essv20697,essv19884,essv24326,essv11471,essv25187,essv22010,essv24351,essv19068,essv20551,essv24189,essv20501,essv19036,essv24631,essv18577,essv22285,essv19383 M 271 0 0 "" NA07019,NA07034,NA07056,NA07345,NA10839,NA10846,NA10851,NA10857,NA10859,NA11830,NA11839,NA11840,NA11881,NA11882,NA11995,NA12006,NA12044,NA12144,NA12146,NA12239,NA12707,NA12716,NA12762,NA12802,NA12815,NA12874,NA18516,NA18852,NA18856,NA19172,NA19173 dgv1973e1 6 77496587 77533382 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv25120,essv20993,essv13984,essv14260,essv10507,essv20459,essv8509,essv18671,essv24100,essv21617,essv25105,essv14046,essv11292,essv14803,essv24446,essv13363,essv22694,essv13964,essv6411,essv21088 M 271 0 0 "" NA06994,NA07048,NA07348,NA10854,NA10856,NA10863,NA12004,NA12056,NA12814,NA12865,NA18545,NA18854,NA18862,NA18863,NA18870,NA19098,NA19100,NA19143,NA19159,NA19160 nsv442989 6 77496588 77509522 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv830701 6 77565871 77735321 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445465 S 95 0 1 "" nsv528107 6 77629954 77633580 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704648 S 2026 0 1 "" nsv516301 6 77928908 77929493 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv679121,nssv685497,nssv675800,nssv654579,nssv688621,nssv667411,nssv675679,nssv670053,nssv687460,nssv691037,nssv678105,nssv663504 M 2026 0 12 "" nsv5360 6 78064469 78097750 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4925 S 9 1 0 "" NA19129 nsv463166 6 78140690 78184093 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv539191 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01312 dgv1974e1 6 78156739 78233520 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv16315,essv5165 M 271 0 0 "" NA18564,NA19193 dgv1975e1 6 78156739 78339761 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2434,esv92 M 271 0 0 "" NA18999 nsv7927 6 78324990 78328889 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16943,nssv14304,nssv13810,nssv16611,nssv13481,nssv15698,nssv15601 M 31 0 7 Samples from several populations that are part of the HapMap project. "" NA12155,NA12802,NA12872,NA18860,NA18972,NA18975,NA19240 nsv521951 6 78334494 78417889 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694113 S 2026 0 1 "" nsv515928 6 78384797 78389612 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv665348,nssv669912,nssv669696 M 2026 0 3 "" dgv1976e1 6 78393674 78637549 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv469,essv14052 M 271 0 0 "" NA18861 nsv818430 6 78399954 78407561 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416355,nssv1416354 M 112 0 2 "" NA18855,NA18857 esv33879 6 78440570 78496793 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99813 S 51 1 0 "" 22086 nsv5361 6 78458215 78514359 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4926,nssv9693,nssv2600 M 9 0 3 "" NA18507,NA18555,NA19129 nsv508414 6 78484580 78505392 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617524 S 4 0 1 "" CHM nsv517110 6 78531704 78535737 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv653800,nssv688533 M 2026 0 2 "" nsv510921 6 78549359 78579349 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621592 S 4 0 0 "" NA15510 nsv830702 6 78630417 78773876 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445466 S 95 0 1 "" nsv5362 6 78749599 78795480 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6073 S 9 0 1 "" NA12156 dgv1977e1 6 78852599 79250187 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv24301,essv7037,essv10157,essv11533,essv4059,esv575,essv14496,essv10536,essv8939,essv16773,essv2520 M 271 0 0 "" NA10856,NA18612,NA18635,NA18872,NA19003,NA19130,NA19173,NA19200,NA19202,NA19240 nsv516597 6 78904816 79109421 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv669324,nssv672396,nssv670636,nssv660023,nssv655048,nssv688754,nssv675890,nssv683790,nssv666242,nssv653490,nssv675153,nssv658615,nssv677106,nssv677706,nssv692657,nssv673148,nssv685448,nssv683454,nssv682501,nssv702020,nssv660377,nssv657958,nssv691086,nssv683487,nssv663566,nssv692269,nssv654142,nssv690463,nssv651973,nssv662030,nssv683844,nssv668114,nssv685699,nssv673195,nssv655571,nssv660109,nssv665772,nssv656106,nssv670841,nssv664340,nssv667187,nssv667129,nssv658725,nssv662972,nssv688388,nssv669223,nssv656481,nssv658034,nssv684038,nssv662722,nssv666168,nssv673386,nssv692951,nssv652584,nssv659675,nssv683062,nssv664743,nssv664049,nssv677060,nssv660695,nssv673321,nssv668601,nssv657430,nssv652880,nssv667205,nssv685428,nssv689296,nssv679653,nssv681132,nssv687505,nssv661785,nssv662257,nssv651996,nssv668962,nssv689157,nssv674285,nssv667328,nssv662751,nssv657514,nssv685019,nssv676669,nssv687551,nssv655832,nssv681880,nssv671676,nssv673933,nssv672035,nssv669287,nssv676185,nssv672459,nssv680118,nssv676563,nssv652387,nssv675530,nssv667553,nssv681612,nssv680985,nssv674010,nssv679205,nssv671200,nssv691559,nssv659387,nssv662499,nssv688300,nssv652314,nssv656597,nssv683514,nssv654893,nssv675877,nssv689817,nssv661795,nssv689833,nssv654833,nssv687165,nssv686055,nssv654193,nssv663505,nssv691463,nssv678155,nssv667220,nssv661615,nssv657694,nssv689004,nssv684746,nssv682389,nssv660256,nssv665844,nssv678636,nssv653415,nssv659641,nssv689946,nssv678797,nssv672021,nssv685886,nssv669872,nssv682424,nssv692694,nssv658057,nssv676525,nssv659457,nssv690225,nssv669348,nssv651795,nssv685652,nssv669484,nssv652970,nssv670827,nssv661849,nssv656313,nssv673834,nssv684958,nssv673073,nssv674914,nssv662547,nssv690635,nssv658420,nssv685233,nssv693020,nssv680659,nssv679670,nssv658156,nssv680279,nssv661001,nssv684942,nssv670970,nssv691275,nssv652032,nssv673061,nssv688669,nssv666057,nssv687784,nssv657643,nssv670335,nssv665910,nssv687567,nssv656441,nssv688709,nssv679286,nssv686010,nssv687795,nssv676817,nssv660743,nssv675852,nssv660500,nssv684265,nssv684512,nssv673097,nssv685621,nssv683498,nssv677799,nssv673496,nssv685716,nssv663343,nssv661550,nssv663348,nssv691428,nssv683390,nssv653065,nssv677287,nssv679179,nssv679509,nssv653710,nssv658525,nssv692195,nssv658776,nssv665599,nssv653248,nssv692336,nssv692302,nssv671068,nssv671333,nssv677161,nssv688562,nssv684110,nssv677313,nssv680473,nssv668886,nssv681040,nssv657030,nssv683546,nssv686786,nssv669312,nssv653968,nssv681788,nssv655763,nssv662392,nssv694042,nssv683753,nssv671211,nssv681413,nssv670699,nssv654595,nssv691002,nssv686029,nssv653913,nssv654973,nssv664489,nssv661027,nssv664361,nssv685405,nssv654854,nssv672117,nssv664373,nssv681587,nssv654909,nssv679365,nssv677002,nssv681026,nssv669718,nssv660723,nssv652988,nssv655738,nssv660218,nssv664904,nssv685315,nssv677267,nssv658566,nssv687623,nssv690261,nssv674066,nssv671423,nssv655637,nssv670016,nssv685591,nssv666113,nssv658181,nssv664416,nssv676434,nssv669259,nssv663683,nssv655646,nssv687744,nssv657326,nssv670397,nssv693478,nssv683311,nssv671861,nssv693318,nssv657303,nssv666602,nssv674206,nssv661525,nssv690727,nssv659907,nssv654736,nssv662438,nssv676454,nssv675355,nssv681981,nssv660066,nssv671097,nssv661113,nssv688690,nssv674647,nssv654453,nssv677970,nssv674989,nssv691837,nssv664555,nssv670032,nssv655134,nssv688075,nssv674223,nssv675285,nssv682187,nssv665277,nssv690854,nssv656814,nssv681657,nssv664094,nssv665157,nssv693555,nssv665938,nssv651707,nssv662156,nssv657728,nssv669055,nssv675098,nssv674036,nssv686987,nssv674377,nssv681843,nssv678560,nssv665881,nssv693218,nssv662061,nssv691886,nssv659374,nssv653308,nssv663053,nssv662740,nssv672956,nssv655779,nssv665827,nssv690691,nssv674131,nssv659997,nssv684926,nssv683628,nssv672688,nssv655871,nssv683570,nssv659858,nssv661641,nssv694233,nssv675550,nssv671361,nssv689737,nssv693358,nssv664883,nssv688271,nssv657878,nssv661862,nssv664636,nssv656240,nssv690315,nssv653690,nssv677396,nssv655997,nssv683111,nssv678689,nssv656267,nssv687805,nssv679987,nssv667864,nssv670598,nssv661183,nssv687731,nssv686433,nssv653752,nssv657120,nssv686938,nssv668257,nssv665251,nssv686279,nssv682053,nssv689864,nssv687899,nssv667075,nssv669139,nssv687373,nssv676477,nssv672249,nssv665785,nssv655123,nssv687355,nssv675184,nssv659511,nssv694003,nssv685916,nssv656764,nssv693141,nssv664678,nssv674442,nssv667412,nssv663033,nssv651697,nssv673858,nssv654876,nssv678605,nssv679122,nssv679569,nssv674515,nssv672386,nssv663329,nssv689634,nssv682759,nssv671011,nssv675009,nssv690665,nssv676345,nssv678764,nssv688178,nssv660677,nssv689470,nssv683476,nssv682246,nssv683200,nssv652183,nssv654233,nssv672289,nssv689805,nssv662003,nssv656080,nssv680844,nssv685800,nssv667434,nssv665603,nssv654938,nssv680589,nssv656064,nssv693156,nssv674484,nssv675611,nssv690085,nssv657625,nssv664388,nssv660913,nssv662285,nssv659760,nssv657894,nssv652746,nssv656045,nssv671972,nssv667258,nssv680492,nssv690353,nssv658479,nssv674242,nssv680805,nssv668086,nssv667779,nssv661969,nssv655486,nssv663090,nssv663062,nssv665568,nssv653266,nssv681749,nssv661373,nssv669521,nssv672007,nssv686689,nssv653186,nssv682525,nssv655797,nssv659061,nssv693270,nssv664933,nssv657245,nssv680250,nssv669441,nssv659724,nssv678930,nssv683440,nssv671380,nssv655249,nssv664996,nssv671274,nssv666484,nssv657943,nssv691589,nssv679387,nssv658809,nssv683406,nssv665654,nssv679962,nssv685130,nssv671615,nssv683730,nssv657765,nssv671433,nssv687015,nssv679786,nssv679066,nssv670456,nssv682119,nssv684429,nssv681267,nssv670192,nssv672831,nssv662517,nssv656254,nssv675710,nssv686963,nssv665677,nssv653632,nssv665183,nssv686191,nssv685544,nssv672717,nssv678718,nssv652407,nssv658582,nssv683830,nssv687183,nssv680563,nssv677562,nssv679529,nssv667039,nssv685522,nssv666980,nssv693198,nssv688873,nssv674394,nssv663529,nssv687980,nssv674882,nssv679345,nssv687876,nssv676305,nssv684013,nssv667054,nssv668836,nssv677837,nssv663433,nssv688092,nssv660459,nssv674353,nssv660573,nssv663223,nssv671756,nssv664267,nssv688585,nssv672163,nssv672786,nssv678855,nssv669781,nssv658604,nssv666222,nssv681945,nssv694025,nssv668932,nssv681146,nssv693752,nssv660481,nssv681539,nssv677953,nssv665828,nssv667607,nssv668363,nssv667270,nssv671900,nssv653168,nssv675480,nssv681011,nssv689845,nssv689653,nssv690962,nssv656554,nssv673297,nssv689687,nssv664116,nssv675270,nssv687759,nssv693841,nssv678037,nssv680606,nssv651917,nssv675821,nssv682940,nssv682855,nssv659314,nssv680415,nssv659440,nssv691952,nssv686472,nssv668823,nssv686822,nssv663905,nssv661478,nssv679814,nssv678481,nssv662091,nssv653523,nssv656927,nssv658532,nssv662113,nssv674576,nssv653472,nssv658697,nssv673737,nssv683764,nssv689547,nssv674597,nssv692322,nssv668283,nssv664438,nssv667387,nssv684156,nssv680024,nssv677629,nssv676088,nssv660404,nssv677226,nssv662666,nssv689715,nssv652327,nssv667452,nssv668442,nssv656643,nssv665060,nssv692599,nssv679097,nssv659148,nssv689206,nssv693808,nssv674320,nssv662865,nssv686796,nssv684233,nssv660964,nssv657853,nssv652148,nssv669731,nssv658269,nssv684466,nssv690503,nssv655696,nssv691685,nssv660136,nssv684844,nssv685077,nssv667009,nssv681705,nssv660419,nssv658445,nssv651684,nssv657540,nssv673130,nssv669000,nssv675913,nssv680197,nssv680924,nssv675993,nssv668337,nssv669364,nssv685931,nssv671381,nssv665676,nssv674796,nssv689367,nssv689593,nssv690903,nssv669162,nssv676625,nssv681725,nssv674939,nssv659168,nssv651794,nssv680895,nssv654085,nssv693115,nssv675424,nssv653126,nssv691759,nssv670406,nssv686751,nssv651893,nssv683680,nssv684891,nssv681858,nssv681176,nssv684738,nssv688054,nssv652828,nssv688646,nssv666504,nssv677541,nssv657463,nssv656939,nssv655176,nssv688313,nssv669856,nssv656750,nssv652784,nssv676720,nssv693616,nssv675119,nssv671817,nssv652083,nssv666058,nssv676286,nssv670620,nssv681773,nssv658861,nssv681234,nssv669652,nssv660696,nssv674664,nssv673764,nssv674758,nssv663632,nssv670895,nssv681902,nssv656130,nssv660527,nssv683983,nssv670107,nssv652910,nssv660202,nssv664093,nssv690617,nssv686390,nssv690765,nssv655101,nssv662333,nssv657706,nssv666221,nssv679029,nssv666291,nssv660234,nssv652946,nssv677105,nssv665503,nssv658338,nssv665071,nssv682526,nssv678916,nssv676900,nssv682714,nssv652107,nssv662127,nssv683175,nssv684552,nssv670811,nssv661238,nssv693044,nssv682777,nssv655846,nssv666681,nssv689926,nssv676275,nssv681673,nssv657355,nssv667760,nssv671879,nssv687769,nssv675132,nssv652517,nssv672578,nssv680328,nssv669892,nssv656680,nssv673456,nssv665976,nssv658548,nssv677429,nssv682273,nssv681348,nssv672512,nssv682646,nssv654653,nssv665737,nssv665524,nssv682142,nssv652293,nssv679766,nssv693342,nssv671031,nssv655270,nssv667233,nssv693075,nssv687273,nssv690169,nssv665241,nssv673352,nssv681570,nssv661726,nssv676203,nssv660312,nssv689275,nssv684482,nssv688978,nssv681361,nssv670744,nssv679627,nssv672971,nssv681560,nssv689405,nssv671556,nssv672147,nssv656902,nssv667667,nssv680542,nssv663175,nssv690464,nssv686627,nssv654532,nssv677378,nssv666803,nssv672539,nssv670378,nssv687112,nssv675572,nssv691717,nssv670923,nssv666139,nssv684494,nssv672851,nssv659693,nssv661573,nssv666659,nssv669412,nssv675203,nssv663739,nssv674499,nssv678976,nssv692459,nssv667852,nssv683135,nssv692823,nssv675064,nssv669763,nssv683291,nssv659230,nssv679259,nssv652698,nssv653007,nssv658629 M 2026 76 764 "" nsv5363 6 78912873 78970927 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv561,nssv9429 M 9 0 2 "" NA18517,NA19240 nsv7928 6 78933465 78962007 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15631,nssv14450,nssv17234 M 31 0 3 Samples from several populations that are part of the HapMap project. "" NA18517,NA18853,NA19240 nsv442990 6 78938170 78955234 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv1978e1 6 78947195 79156482 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv15121,essv3002,essv8475,essv5105,essv3860,essv10796,essv1751,essv526,essv24835,essv10217,essv21864,essv7407,essv22146,essv6157,essv667,essv18167,essv4611,essv9981,essv16127,essv22186,essv1389,essv24081,essv7544,essv16632,essv24778,essv7175,essv23416,essv15791,essv12771,essv24662,essv22873,essv7848,essv21661,essv9081,essv6746,essv8850,essv13767,essv11667,essv12551,essv5518,essv21460,essv9179,essv17795,essv14285,essv2212,essv13475,essv12337,essv19435,essv16979,essv6267,essv13851,essv85,essv22034,essv6640,essv23046,essv17283,essv5334,essv14064,essv4681,essv6696,essv417,essv11263,essv19516,essv24925,essv18323,essv7282,essv16307,essv17728,essv15620,essv21410,essv9342,essv296,essv1512,essv22750,essv1624,essv3397,essv20095,essv13560,essv23486,essv25021,essv1175,essv20575,essv2836,essv9616,essv16002,essv11923,essv8126,essv17432,essv5246,essv2657,essv155,essv2085,essv15491,essv13652,essv320 M 271 0 0 "" NA06994,NA07000,NA07019,NA07034,NA07048,NA07056,NA10831,NA10839,NA10846,NA10854,NA10857,NA10859,NA10860,NA11829,NA11839,NA11840,NA12043,NA12044,NA12057,NA12154,NA12248,NA12717,NA12740,NA12760,NA12812,NA12864,NA12872,NA18501,NA18502,NA18505,NA18508,NA18516,NA18523,NA18524,NA18529,NA18532,NA18545,NA18547,NA18558,NA18562,NA18563,NA18577,NA18592,NA18608,NA18621,NA18622,NA18623,NA18624,NA18636,NA18853,NA18854,NA18856,NA18861,NA18912,NA18942,NA18945,NA18949,NA18951,NA18952,NA18953,NA18960,NA18967,NA18968,NA18971,NA18975,NA18978,NA18980,NA18981,NA18991,NA18994,NA18997,NA18998,NA19007,NA19098,NA19099,NA19100,NA19120,NA19127,NA19128,NA19129,NA19131,NA19132,NA19138,NA19141,NA19142,NA19144,NA19152,NA19153,NA19154,NA19160,NA19161,NA19192,NA19194,NA19204,NA19206 dgv1979e1 6 78947195 79250187 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv18948,essv12161,essv14648,essv4652,essv20947,essv15800 M 271 0 0 "" NA12005,NA12801,NA18594,NA19093,NA19101,NA19223 nsv830704 6 78947201 79116376 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445467,nssv1445468 M 95 1 1 "" nsv510039 6 78979998 78985998 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624008 S 4 0 1 "" NA18994 nsv7929 6 78986211 78988819 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16647,nssv14485,nssv17340 M 31 0 3 Samples from several populations that are part of the HapMap project. "" NA18980,NA19132,NA19221 dgv1980e1 6 79001258 79084209 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv18681,essv19295,essv20865,essv21576,essv23313,essv2733,essv18555,essv20469,essv21488,essv19050,essv13508,essv14222,essv18044,essv23719,essv24460,essv20494,essv19817,essv21494,essv3623 M 271 0 0 "" NA06993,NA07022,NA10830,NA10847,NA10851,NA11830,NA12003,NA12056,NA12145,NA12146,NA12249,NA12264,NA12813,NA12865,NA12874,NA18913,NA18914,NA18965,NA18966 dgv1981e1 6 79001258 79116509 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv20832,essv2370,essv8540,essv10600,essv18473,essv18883,essv24208,essv23277,essv19475,essv7931,essv9305,essv19876,essv20692,essv24325,essv14031,essv11296,essv8889,essv24606,essv981,essv15195,essv20749,essv17696 M 271 0 0 "" NA07029,NA07345,NA07357,NA10835,NA10855,NA11832,NA11881,NA11882,NA12144,NA12750,NA12802,NA12875,NA18503,NA18504,NA18852,NA18862,NA18863,NA18964,NA18995,NA19171,NA19209,NA19211 nsv510902 6 79009053 79098805 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618689 S 4 0 0 "" CHM nsv5364 6 79013151 79106824 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3451 S 9 0 1 "" NA12878 nsv507341 6 79015773 79021773 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621845,nssv620346,nssv622978 M 4 3 0 "" NA10860,NA15510,NA18994 dgv765n27 6 79016607 79101608 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv463686,nsv463221,nsv463233,nsv463211,nsv463230,nsv463242,nsv463788,nsv463787,nsv463247,nsv463864,nsv463865,nsv463789,nsv463169,nsv463212 M 1557 14 0 "" 1780854305_A,1780854556_A,1780862334_A,1780862401_A,1780862435_A,1780862480_A,1780862577_A,HGDP01356,NINDS_236,NINDS_242,NINDS_244,NINDS_255,NINDS_272,NINDS_89 dgv122n17 6 79018585 79069147 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437001,nsv437003,nsv437004 M 60 0 3 "" NA10830,NA10835,NA10838 dgv1982e1 6 79019012 79150726 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv21633,essv19713,essv13125,essv21887 M 271 0 0 "" NA06991,NA07348,NA12236,NA18859 dgv766n27 6 79019259 79088461 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv463197,nsv463193,nsv463209,nsv463237,nsv463182,nsv463179,nsv463189,nsv463192,nsv463188,nsv463220,nsv463204,nsv463207,nsv463177,nsv463229,nsv463200,nsv463215,nsv463218,nsv463190,nsv463194,nsv463183,nsv463199,nsv463186,nsv463222,nsv463203,nsv463231,nsv463174,nsv463236,nsv463198,nsv463227,nsv463170,nsv463171,nsv463238,nsv463196,nsv463187,nsv463175,nsv463234,nsv463205,nsv463208,nsv463180,nsv463213,nsv463232,nsv463225,nsv463223,nsv463201,nsv463214,nsv463226,nsv463202,nsv463191,nsv463224,nsv463181,nsv463235,nsv463176,nsv463185,nsv463216,nsv463219,nsv463210 M 1557 0 56 "" 1780846029_A,1780854206_A,1780854325_A,1780854326_A,1780854338_A,1780854392_A,1780854530_A,1780854537_A,1780862014_A,1780862015_A,1780862077_A,1780862094_A,1780862111_A,1780862160_A,1780862165_A,1780862207_A,1780862300_A,1780862528_A,1780862530_A,1782681110_A,1782681169_A,1782681287_A,1782681495_A,1788485381_A,1798860306_A,1798860443_A,HGDP00017,HGDP00049,HGDP00103,HGDP00407,HGDP00560,HGDP00586,HGDP00640,HGDP00642,HGDP00643,HGDP00666,HGDP00749,HGDP00804,HGDP00837,HGDP00885,HGDP00932,HGDP01034,HGDP01072,HGDP01264,HGDP01334,HGDP01373,NINDS_104,NINDS_113,NINDS_160,NINDS_165,NINDS_171,NINDS_173,NINDS_174,NINDS_218,NINDS_42,NINDS_82 dgv767n27 6 79019259 79109421 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv463695,nsv463693,nsv463678,nsv463652,nsv463674,nsv463670,nsv463684,nsv463681,nsv463240,nsv463662,nsv463658,nsv463692,nsv463665,nsv463656,nsv463677,nsv463668,nsv463671,nsv463660,nsv463246,nsv463682,nsv463245,nsv463655,nsv463786,nsv463244,nsv463697,nsv463688,nsv463243,nsv463249,nsv463666,nsv463676,nsv463673,nsv463675,nsv463687,nsv463664,nsv463657,nsv463785,nsv463696,nsv463679,nsv463689,nsv463654,nsv463659,nsv463663,nsv463691,nsv463241,nsv463248,nsv463690,nsv463653,nsv463669,nsv463680,nsv463685,nsv463667,nsv463178 M 1557 0 52 "" 1780846322_A,1780854063_A,1780854334_A,1780854477_A,1780854574_A,1780854585_A,1780862007_A,1780862057_A,1780862071_A,1780862095_A,1780862100_A,1780862197_A,1780862274_A,1780862386_A,1780862391_A,1780862431_A,1782681109_A,1787431166_A,1798860336_A,HGDP00033,HGDP00092,HGDP00149,HGDP00153,HGDP00154,HGDP00264,HGDP00412,HGDP00511,HGDP00541,HGDP00564,HGDP00601,HGDP00614,HGDP00634,HGDP00649,HGDP00650,HGDP00673,HGDP00732,HGDP00753,HGDP00802,HGDP00805,HGDP00808,HGDP00925,HGDP00927,HGDP00933,HGDP00956,HGDP01263,HGDP01269,HGDP01372,HGDP01405,NINDS_106,NINDS_123,NINDS_158,NINDS_18 nsv7930 6 79022028 79094618 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14334,nssv16641,nssv16677,nssv14480,nssv14913,nssv15058,nssv15276,nssv15029,nssv14958,nssv15728,nssv15166,nssv17264,nssv16152,nssv15661,nssv15699,nssv14477,nssv14515,nssv13519,nssv17370,nssv14576,nssv16973,nssv14122,nssv13511,nssv14824,nssv14595 M 31 25 0 Samples from several populations that are part of the HapMap project. "" NA07048,NA10839,NA10863,NA12155,NA12740,NA12872,NA18502,NA18517,NA18537,NA18552,NA18563,NA18564,NA18572,NA18853,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19144,NA19173,NA19221,NA19240 esv32969 6 79024586 79091879 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101465,essv98784,essv97464,essv101199,essv93821,essv100720,essv94674,essv94103,essv97002,essv95706,essv95491,essv93085,essv94634,essv92798,essv93609,essv96218,essv97166,essv98538,essv99709,essv95011,essv92607,essv99266,essv97717,essv100567,essv94275 M 51 0 25 "" 21603,21606,21616,21618,21634,21656,21791,21802,21817,21841,21847,21863,21932,21944,21972,22007,22075,22085,22217,22231,22233,22275,22278,22298,22394 nsv442991 6 79025784 79091904 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv433236 6 79029649 79090197 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463117 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA12878 nsv437972 6 79029920 79039487 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv468784,nssv468782,nssv468783,nssv468781 M 269 0 4 Samples from several populations that are part of the HapMap project. "" NA18503,NA18504,NA18913,NA18914 nsv818431 6 79029920 79078423 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417184,nssv1417032 M 112 2 0 "" NA07000,NA18550 dgv59n64 6 79029920 79088461 CNV Gain+Loss Wang_et_al_2007 17921354 SNP_array nsv818435,nsv818432 M 112 6 32 "" NA06985,NA06991,NA06993,NA06994,NA07029,NA07345,NA07348,NA07357,NA10830,NA10835,NA10847,NA10851,NA11881,NA11882,NA12056,NA12146,NA12236,NA12249,NA12264,NA12750,NA12813,NA12865,NA12874,NA12875,NA12878,NA12891,NA12892,NA18577,NA18608,NA18609,NA18852,NA18944,NA18952,NA18960,NA18965,NA18987,NA19119,NA19171 dgv768n27 6 79029920 79088461 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv463853,nsv463847,nsv463708,nsv463747,nsv463527,nsv463524,nsv463818,nsv463730,nsv463610,nsv463851,nsv463255,nsv463791,nsv463856,nsv463742,nsv463857,nsv463842,nsv463755,nsv463257,nsv463731,nsv463840,nsv463815,nsv463814,nsv463746,nsv463768,nsv463762,nsv463570,nsv463795,nsv463802,nsv463823,nsv463852,nsv463824,nsv463596,nsv463721,nsv463800,nsv463796,nsv463620,nsv463718,nsv463618,nsv463468,nsv463564,nsv463729,nsv463764,nsv463792,nsv463719,nsv463598,nsv463701,nsv463589,nsv463871,nsv463878,nsv463745,nsv463859,nsv463737,nsv463752,nsv463608,nsv463771,nsv463519,nsv463276,nsv463801,nsv463803,nsv463568,nsv463837,nsv463877,nsv463846,nsv463860,nsv463873,nsv463748,nsv463700,nsv463754,nsv463841,nsv463797,nsv463830,nsv463698,nsv463777,nsv463845,nsv463606,nsv463798,nsv463311,nsv463870,nsv463738,nsv463863,nsv463769,nsv463849,nsv463854,nsv463277,nsv463258,nsv463793,nsv463579,nsv463806,nsv463763,nsv463740,nsv463808,nsv463735,nsv463867,nsv463781,nsv463767,nsv463253,nsv463715,nsv463790,nsv463835,nsv463546,nsv463757,nsv463832,nsv463828,nsv463551,nsv463844,nsv463725,nsv463758,nsv463862,nsv463724,nsv463756,nsv463866,nsv463834,nsv463556,nsv463722,nsv463807,nsv463635,nsv463858,nsv463723,nsv463780,nsv463843 M 1557 120 0 "" 1780846321_A,1780854017_A,1780854039_A,1780854065_A,1780854100_A,1780854129_A,1780854176_A,1780854179_A,1780854216_A,1780854235_A,1780854255_A,1780854257_A,1780854295_A,1780854313_A,1780854362_A,1780854382_A,1780854391_A,1780854418_A,1780854430_A,1780854444_A,1780854459_A,1780854467_A,1780854483_A,1780854484_A,1780854491_A,1780854518_A,1780854522_A,1780854532_A,1780854540_A,1780854558_A,1780854568_A,1780862021_A,1780862041_A,1780862043_A,1780862078_A,1780862081_A,1780862082_A,1780862085_A,1780862090_A,1780862109_A,1780862161_A,1780862175_A,1780862202_A,1780862246_A,1780862260_A,1780862298_A,1780862299_A,1780862301_A,1780862345_A,1780862346_A,1780862356_A,1780862373_A,1780862378_A,1780862381_A,1780862393_A,1780862433_A,1780862437_A,1780862443_A,1780862448_A,1780862457_A,1780862461_A,1780862469_A,1780862505_A,1780862520_A,1780862521_A,1780862551_A,1780862559_A,1780862586_A,1780862594_A,1780862597_A,1782681102_A,1782681142_A,1782681263_A,1782681277_A,1782681278_A,1782681294_A,1787431167_A,1798860210_A,1798860277_A,1798860280_A,1798860491_A,HGDP00417,HGDP00554,HGDP00594,HGDP00668,HGDP01021,NINDS_102,NINDS_12,NINDS_124,NINDS_127,NINDS_130,NINDS_134,NINDS_135,NINDS_136,NINDS_189,NINDS_190,NINDS_201,NINDS_208,NINDS_210,NINDS_215,NINDS_216,NINDS_217,NINDS_22,NINDS_225,NINDS_23,NINDS_239,NINDS_240,NINDS_247,NINDS_26,NINDS_260,NINDS_268,NINDS_49,NINDS_58,NINDS_65,NINDS_7,NINDS_70,NINDS_73,NINDS_74,NINDS_83,NINDS_98 dgv769n27 6 79029920 79088461 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv463501,nsv463704,nsv463370,nsv463504,nsv463638,nsv463485,nsv463391,nsv463378,nsv463340,nsv463813,nsv463770,nsv463445,nsv463404,nsv463290,nsv463529,nsv463584,nsv463281,nsv463267,nsv463778,nsv463418,nsv463537,nsv463307,nsv463414,nsv463286,nsv463595,nsv463401,nsv463321,nsv463409,nsv463744,nsv463448,nsv463645,nsv463641,nsv463804,nsv463296,nsv463392,nsv463323,nsv463407,nsv463593,nsv463427,nsv463335,nsv463600,nsv463437,nsv463513,nsv463421,nsv463510,nsv463356,nsv463773,nsv463741,nsv463819,nsv463523,nsv463460,nsv463574,nsv463569,nsv463432,nsv463389,nsv463487,nsv463412,nsv463464,nsv463585,nsv463275,nsv463289,nsv463282,nsv463642,nsv463354,nsv463821,nsv463264,nsv463297,nsv463348,nsv463799,nsv463345,nsv463630,nsv463609,nsv463405,nsv463262,nsv463366,nsv463488,nsv463576,nsv463743,nsv463477,nsv463309,nsv463760,nsv463336,nsv463355,nsv463533,nsv463621,nsv463703,nsv463379,nsv463711,nsv463360,nsv463717,nsv463273,nsv463452,nsv463707,nsv463543,nsv463779,nsv463560,nsv463869,nsv463644,nsv463601,nsv463420,nsv463440,nsv463531,nsv463643,nsv463423,nsv463302,nsv463364,nsv463632,nsv463647,nsv463375,nsv463325,nsv463516,nsv463293,nsv463498,nsv463254,nsv463474,nsv463387,nsv463473,nsv463451,nsv463304,nsv463280,nsv463305,nsv463581,nsv463500,nsv463782,nsv463333,nsv463312,nsv463512,nsv463344,nsv463322,nsv463759,nsv463649,nsv463429,nsv463486,nsv463530,nsv463732,nsv463268,nsv463467,nsv463447,nsv463442,nsv463734,nsv463709,nsv463436,nsv463535,nsv463320,nsv463575,nsv463636,nsv463410,nsv463648,nsv463397,nsv463315,nsv463549,nsv463463,nsv463263,nsv463413,nsv463766,nsv463456,nsv463400,nsv463552,nsv463330,nsv463381,nsv463353,nsv463252,nsv463458,nsv463751,nsv463279,nsv463525,nsv463622,nsv463776,nsv463515,nsv463362,nsv463542,nsv463388,nsv463251,nsv463269,nsv463408,nsv463534,nsv463433,nsv463303,nsv463270,nsv463558,nsv463706,nsv463334,nsv463402,nsv463471,nsv463385,nsv463352,nsv463313,nsv463736,nsv463713,nsv463577,nsv463833,nsv463499,nsv463810,nsv463836,nsv463875,nsv463386,nsv463495,nsv463285,nsv463541,nsv463580,nsv463274,nsv463415,nsv463287,nsv463492,nsv463301,nsv463373,nsv463327,nsv463369,nsv463398,nsv463855,nsv463288,nsv463557,nsv463399,nsv463651,nsv463625,nsv463578,nsv463358,nsv463376,nsv463565,nsv463457,nsv463637,nsv463491,nsv463422,nsv463299,nsv463359,nsv463347,nsv463809,nsv463342,nsv463459,nsv463586,nsv463633,nsv463318,nsv463566,nsv463265,nsv463538,nsv463868,nsv463346,nsv463478,nsv463520,nsv463553,nsv463443,nsv463547,nsv463341,nsv463357,nsv463266,nsv463425,nsv463702,nsv463599,nsv463260,nsv463613,nsv463712,nsv463831,nsv463784,nsv463629,nsv463640,nsv463431,nsv463338,nsv463314,nsv463271,nsv463453,nsv463825,nsv463714,nsv463615,nsv463817,nsv463441,nsv463466,nsv463612,nsv463324,nsv463316,nsv463554,nsv463455,nsv463726,nsv463521,nsv463292,nsv463430,nsv463602,nsv463733,nsv463597,nsv463573,nsv463337,nsv463331,nsv463475,nsv463753,nsv463503,nsv463518,nsv463522,nsv463484,nsv463582,nsv463749,nsv463720,nsv463449,nsv463604,nsv463259,nsv463774,nsv463555,nsv463435,nsv463393,nsv463536,nsv463812,nsv463548,nsv463377,nsv463482,nsv463614,nsv463848,nsv463308,nsv463540,nsv463626,nsv463559,nsv463822,nsv463634,nsv463384,nsv463278,nsv463374,nsv463631,nsv463591,nsv463829,nsv463699,nsv463326,nsv463434,nsv463479,nsv463444,nsv463514,nsv463438,nsv463426,nsv463562,nsv463508,nsv463382,nsv463390,nsv463623,nsv463416,nsv463332,nsv463590,nsv463507,nsv463493,nsv463465,nsv463365,nsv463424,nsv463611,nsv463298,nsv463291,nsv463710,nsv463329,nsv463319,nsv463351,nsv463874,nsv463544,nsv463380,nsv463811,nsv463368,nsv463627,nsv463343,nsv463349,nsv463490,nsv463820,nsv463603,nsv463646,nsv463411,nsv463310,nsv463462,nsv463826,nsv463545,nsv463496,nsv463876,nsv463563,nsv463300,nsv463363,nsv463481,nsv463509,nsv463294,nsv463446,nsv463511,nsv463571,nsv463497,nsv463526,nsv463607,nsv463454,nsv463567,nsv463469,nsv463592,nsv463588,nsv463470,nsv463765,nsv463587,nsv463489,nsv463480,nsv463532,nsv463403,nsv463419,nsv463396,nsv463371,nsv463256,nsv463775,nsv463476,nsv463502,nsv463367,nsv463624,nsv463619 M 1557 0 397 "" 1780846005_A,1780854009_A,1780854023_A,1780854061_A,1780854079_A,1780854080_A,1780854095_A,1780854101_A,1780854117_A,1780854128_A,1780854196_A,1780854197_A,1780854198_A,1780854215_A,1780854219_A,1780854231_A,1780854238_A,1780854260_A,1780854264_A,1780854278_A,1780854288_A,1780854294_A,1780854296_A,1780854299_A,1780854327_A,1780854335_A,1780854336_A,1780854339_A,1780854354_A,1780854357_A,1780854393_A,1780854441_A,1780854445_A,1780854446_A,1780854449_A,1780854462_A,1780854464_A,1780854481_A,1780854485_A,1780854486_A,1780854487_A,1780854489_A,1780854492_A,1780854499_A,1780854517_A,1780854525_A,1780854535_A,1780854545_A,1780854566_A,1780854573_A,1780854592_A,1780862003_A,1780862020_A,1780862040_A,1780862066_A,1780862067_A,1780862075_A,1780862076_A,1780862084_A,1780862088_A,1780862089_A,1780862108_A,1780862125_A,1780862127_A,1780862162_A,1780862206_A,1780862212_A,1780862225_A,1780862252_A,1780862261_A,1780862303_A,1780862307_A,1780862310_A,1780862358_A,1780862360_A,1780862366_A,1780862372_A,1780862384_A,1780862390_A,1780862402_A,1780862403_A,1780862404_A,1780862408_A,1780862410_A,1780862414_A,1780862416_A,1780862424_A,1780862466_A,1780862470_A,1780862516_A,1780862517_A,1780862518_A,1780862539_A,1780862546_A,1780862557_A,1780862563_A,1780862564_A,1780862578_A,1780862584_A,1780862590_A,1780862592_A,1782681024_A,1782681079_A,1782681086_A,1782681091_A,1782681096_A,1782681112_A,1782681114_A,1782681116_A,1782681117_A,1782681164_A,1782681208_A,1782681210_A,1782681217_A,1782681235_A,1782681237_A,1782681247_A,1782681274_A,1782681555_A,1787431195_A,1787431197_A,1788485590_A,1798860047_A,1798860084_A,1798860166_A,1798860186_A,1798860191_A,1798860192_A,1798860217_A,1798860361_A,1798860552_A,1798860565_A,1798860569_A,1798860570_A,1798860592_A,1798860594_A,HGDP00013,HGDP00037,HGDP00043,HGDP00056,HGDP00058,HGDP00060,HGDP00082,HGDP00094,HGDP00099,HGDP00100,HGDP00104,HGDP00108,HGDP00112,HGDP00121,HGDP00127,HGDP00133,HGDP00143,HGDP00155,HGDP00157,HGDP00158,HGDP00160,HGDP00173,HGDP00192,HGDP00199,HGDP00208,HGDP00226,HGDP00244,HGDP00259,HGDP00274,HGDP00285,HGDP00307,HGDP00313,HGDP00336,HGDP00356,HGDP00372,HGDP00444,HGDP00445,HGDP00464,HGDP00513,HGDP00518,HGDP00519,HGDP00524,HGDP00529,HGDP00530,HGDP00534,HGDP00535,HGDP00537,HGDP00540,HGDP00543,HGDP00548,HGDP00558,HGDP00561,HGDP00562,HGDP00563,HGDP00565,HGDP00567,HGDP00573,HGDP00576,HGDP00577,HGDP00580,HGDP00581,HGDP00584,HGDP00590,HGDP00591,HGDP00598,HGDP00604,HGDP00608,HGDP00610,HGDP00612,HGDP00613,HGDP00615,HGDP00616,HGDP00620,HGDP00627,HGDP00628,HGDP00630,HGDP00632,HGDP00639,HGDP00641,HGDP00646,HGDP00647,HGDP00654,HGDP00662,HGDP00667,HGDP00669,HGDP00671,HGDP00672,HGDP00674,HGDP00676,HGDP00683,HGDP00684,HGDP00685,HGDP00686,HGDP00688,HGDP00691,HGDP00692,HGDP00696,HGDP00698,HGDP00701,HGDP00722,HGDP00729,HGDP00730,HGDP00734,HGDP00735,HGDP00737,HGDP00738,HGDP00739,HGDP00740,HGDP00741,HGDP00751,HGDP00755,HGDP00761,HGDP00769,HGDP00782,HGDP00783,HGDP00787,HGDP00788,HGDP00797,HGDP00798,HGDP00799,HGDP00807,HGDP00832,HGDP00846,HGDP00852,HGDP00856,HGDP00862,HGDP00879,HGDP00882,HGDP00883,HGDP00884,HGDP00888,HGDP00890,HGDP00892,HGDP00893,HGDP00897,HGDP00900,HGDP00901,HGDP00902,HGDP00906,HGDP00908,HGDP00912,HGDP00926,HGDP00973,HGDP00998,HGDP01027,HGDP01028,HGDP01064,HGDP01066,HGDP01068,HGDP01069,HGDP01071,HGDP01074,HGDP01077,HGDP01079,HGDP01101,HGDP01103,HGDP01147,HGDP01152,HGDP01155,HGDP01162,HGDP01164,HGDP01166,HGDP01173,HGDP01174,HGDP01177,HGDP01206,HGDP01207,HGDP01211,HGDP01234,HGDP01254,HGDP01257,HGDP01261,HGDP01265,HGDP01267,HGDP01271,HGDP01274,HGDP01277,HGDP01280,HGDP01285,HGDP01287,HGDP01301,HGDP01340,HGDP01350,HGDP01357,HGDP01358,HGDP01366,HGDP01374,HGDP01379,HGDP01384,HGDP01385,HGDP01386,HGDP01397,HGDP01400,HGDP01402,HGDP01404,HGDP01418,HGDP01419,NINDS_10,NINDS_100,NINDS_101,NINDS_110,NINDS_111,NINDS_112,NINDS_115,NINDS_118,NINDS_129,NINDS_13,NINDS_133,NINDS_14,NINDS_142,NINDS_15,NINDS_155,NINDS_156,NINDS_172,NINDS_183,NINDS_194,NINDS_197,NINDS_198,NINDS_199,NINDS_203,NINDS_206,NINDS_207,NINDS_209,NINDS_212,NINDS_220,NINDS_221,NINDS_222,NINDS_224,NINDS_226,NINDS_230,NINDS_231,NINDS_232,NINDS_233,NINDS_235,NINDS_237,NINDS_246,NINDS_249,NINDS_253,NINDS_254,NINDS_256,NINDS_29,NINDS_31,NINDS_34,NINDS_35,NINDS_41,NINDS_44,NINDS_47,NINDS_48,NINDS_5,NINDS_56,NINDS_59,NINDS_60,NINDS_61,NINDS_62,NINDS_63,NINDS_64,NINDS_66,NINDS_78,NINDS_80,NINDS_84,NINDS_90 nsv437512 6 79031111 79047544 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467393 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18914 nsv818434 6 79033567 79065999 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415960 S 112 1 0 "" NA12740 esv35140 6 79036100 79083405 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6978307,essv6978306 M 771 0 1 "" NA18998 dgv1983e1 6 79036117 79084209 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv3583,essv24022,essv20448,essv15177,essv637,essv19367,essv24196,essv18019,essv24626,essv18785 M 271 0 0 "" NA06994,NA07019,NA07056,NA10846,NA12873,NA12878,NA12891,NA18987,NA18998,NA19210 dgv1984e1 6 79036117 79111910 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv22795,essv2758,essv7643,essv21906,essv19353,essv2719,essv608,essv22277,essv14825,essv25092 M 271 0 0 "" NA06985,NA10838,NA12753,NA12762,NA12814,NA18632,NA18944,NA18947,NA19000,NA19119 nsv463879 6 79052979 79076473 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv539895 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00137 dgv60n64 6 79056617 79088461 CNV Gain Wang_et_al_2007 17921354 SNP_array nsv818436,nsv818438 M 112 3 0 "" NA12044,NA12801,NA18968 nsv437973 6 79056617 79089088 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv468799,nssv468786,nssv468790,nssv468805,nssv468788,nssv468808,nssv468806,nssv468801,nssv468795,nssv468794,nssv468797,nssv468798,nssv468789,nssv468792,nssv468791,nssv468800,nssv468803,nssv468804,nssv468787,nssv468802,nssv468793,nssv468809 M 269 0 17 Samples from several populations that are part of the HapMap project. "" NA06994,NA07019,NA07022,NA07029,NA10830,NA10835,NA10838,NA10846,NA12003,NA12144,NA12145,NA12236,NA12249,NA18862,NA18863,NA18913,NA18914 nsv463880 6 79056822 79065940 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv539896 S 1557 0 1 "" 1780862487_A dgv770n27 6 79056822 79088461 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv463884,nsv463882 M 1557 2 0 "" 1780862309_A,1780862452_A dgv771n27 6 79056822 79098352 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv463898,nsv463886,nsv463885,nsv463881,nsv463887,nsv463897 M 1557 0 6 "" 1780862579_A,1782681179_A,1788485588_A,NINDS_2,NINDS_27,NINDS_51 nsv821650 6 79058923 79152006 CNV Loss Sebat_et_al_2004 15273396 ROMA Custom Nimblegen photoprint 85000 probe ROMA oligo array nssv1421193,nssv1421190,nssv1421192 M 31 0 3 "" nsv818437 6 79063712 79070425 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417751 S 112 1 0 "" NA19003 dgv772n27 6 79063712 79088461 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv463889,nsv463896,nsv463888,nsv463901,nsv463895,nsv463892,nsv463899,nsv463891,nsv463893,nsv463890,nsv463900 M 1557 0 11 "" 1780862123_A,1798860072_A,NINDS_114,NINDS_21,NINDS_213,NINDS_223,NINDS_251,NINDS_258,NINDS_266,NINDS_36,NINDS_43 nsv437005 6 79069278 79084209 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv466886 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA07029 dgv773n27 6 79076024 79088461 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv463902,nsv463903 M 1557 0 2 "" 1780862074_A,HGDP00341 nsv463904 6 79076024 79098876 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv539920 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00019 dgv123n17 6 79077710 79084209 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437007,nsv437515,nsv437006,nsv437008,nsv437514 M 60 0 5 "" NA10830,NA10835,NA10838,NA18863,NA18914 essv24404 6 79116279 79156482 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12707 nsv7931 6 79135298 79137179 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15729 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA12740 nsv7932 6 79166093 79184939 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14545 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18980 nsv522646 6 79241825 79390707 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv706046 S 2026 1 0 "" nsv519711 6 79513734 79514294 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697007 S 2026 0 1 "" nsv516125 6 79513941 79514294 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv666380,nssv689436 M 2026 0 2 "" nsv5366 6 79553844 79594290 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9694,nssv562 M 9 0 2 "" NA18507,NA19240 nsv508416 6 79566918 79594925 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618792 S 4 0 1 "" NA10860 nsv442992 6 79577781 79585293 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv507342 6 79618503 79624503 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620347,nssv622979,nssv617712,nssv621846 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv830705 6 79716016 79886249 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445469 S 95 1 0 "" nsv518477 6 79756878 79907146 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694240 S 2026 1 0 "" nsv830706 6 79882629 80051597 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445470 S 95 1 0 "" nsv524012 6 80104580 80109308 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699872 S 2026 0 1 "" nsv5367 6 80137142 80146655 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10508,nssv9430,nssv6074 M 9 3 0 "" NA12156,NA18517,NA18956 nsv509140 6 80138319 80154929 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618052,nssv619453,nssv620855,nssv623479 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv830707 6 80191344 80381890 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445471 S 95 1 0 "" nsv463906 6 80297670 80370016 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv539922 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00082 nsv507343 6 80336408 80342408 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621847 S 4 1 0 "" NA10860 nsv5368 6 80371519 80402629 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6075 S 9 1 0 "" NA12156 nsv523718 6 80583105 80585525 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699531 S 2026 0 1 "" nsv516620 6 80621238 80630001 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv682188,nssv673859,nssv674011,nssv682991,nssv660346,nssv677201,nssv669608,nssv685186 M 2026 0 8 "" nsv509141 6 80642538 80676242 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620856,nssv618053,nssv623480,nssv619454 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv5369 6 80647028 80674359 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4927 S 9 1 0 "" NA19129 nsv521038 6 80665013 80668335 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv681760,nssv680458,nssv688728,nssv688142 M 2026 0 4 "" nsv525646 6 80693958 80697566 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701800 S 2026 0 1 "" nsv5370 6 80772070 80808459 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8267 S 9 0 1 "" NA12156 nsv5371 6 80849121 80882859 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8268 S 9 1 0 "" NA12156 nsv830708 6 80901002 81053595 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445472,nssv1445474 M 95 2 0 "" nsv524214 6 80910592 80949146 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700101 S 2026 1 0 "" nsv463907 6 81104278 81132631 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv539923 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00341 nsv528057 6 81244646 81248444 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704591 S 2026 0 1 "" nsv463908 6 81289712 81344394 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv539924 S 1557 0 1 "" 1780854158_A nsv522523 6 81319707 81355407 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705893 S 2026 0 1 "" dgv1985e1 6 81322214 81360930 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1211,essv24113,essv21498,essv18038 M 271 0 0 "" NA06993,NA07048,NA12003 nsv523216 6 81331055 81344394 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698938 S 2026 0 1 "" nsv7933 6 81334276 81350530 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14943,nssv14462,nssv17003,nssv14606,nssv15306 M 31 0 5 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10863,NA18972,NA19007 nsv437974 6 81341226 81341992 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv468811,nssv468813,nssv468812,nssv468810 M 269 0 4 Samples from several populations that are part of the HapMap project. "" NA06991,NA06993,NA07034,NA07048 dgv774n27 6 81341226 81344394 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv463912,nsv463928,nsv463931,nsv463921,nsv463922,nsv463918,nsv463926,nsv463913,nsv463933,nsv463934,nsv463924,nsv463919,nsv463925,nsv463930,nsv463914,nsv463911,nsv463935,nsv463932,nsv463917,nsv463923,nsv463929,nsv463910,nsv463915,nsv463920,nsv463909 M 1557 0 25 "" 1780846004_A,1780854545_A,1780854599_A,1780862311_A,1780862414_A,1780862432_A,1780862574_A,1782681262_A,HGDP00185,HGDP00205,HGDP00758,HGDP00766,HGDP00856,HGDP00995,HGDP00999,HGDP01003,HGDP01010,HGDP01184,HGDP01209,HGDP01236,HGDP01244,HGDP01308,HGDP01383,NINDS_244,NINDS_42 nsv517036 6 81341226 81344394 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv654087,nssv685172,nssv655195,nssv688691,nssv692104,nssv663091,nssv684186,nssv693767,nssv679654,nssv668837,nssv700861,nssv669325,nssv653651,nssv654109,nssv656765,nssv682160,nssv692225,nssv651708,nssv687097,nssv693809,nssv663786,nssv668648,nssv669539,nssv661886,nssv687643,nssv661454,nssv689368,nssv656849,nssv665106,nssv659231,nssv679931,nssv652747,nssv687827,nssv675878,nssv680825,nssv679767,nssv663740,nssv685592,nssv690247,nssv674243,nssv687485,nssv672499,nssv679975,nssv674500,nssv669163,nssv689723,nssv663387,nssv662393,nssv669893,nssv684808,nssv667668,nssv690985,nssv660501,nssv666024,nssv670789,nssv690838,nssv654877,nssv661994,nssv690579,nssv686797,nssv671792,nssv692435,nssv692011,nssv657672,nssv682969,nssv660528,nssv690716,nssv680251,nssv657174,nssv668258,nssv658549,nssv665919,nssv689548,nssv690021,nssv667534,nssv655921,nssv663633,nssv674734,nssv666726,nssv674378,nssv668143,nssv672397,nssv653008,nssv682305,nssv677379,nssv663450,nssv689207,nssv688193,nssv652033,nssv670944,nssv681561,nssv691146,nssv685187,nssv671901,nssv657879,nssv689251,nssv661771,nssv659676,nssv657824,nssv687166,nssv684121,nssv687992,nssv690293,nssv667807,nssv670863,nssv667738,nssv664584,nssv652110 M 2026 0 108 "" nsv818439 6 81341226 81344394 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417034,nssv1417815,nssv1417258,nssv1417035,nssv1417092,nssv1415962,nssv1417804,nssv1417463,nssv1417162,nssv1417583,nssv1417384,nssv1417561,nssv1417572,nssv1415963 M 112 0 14 "" NA06991,NA06993,NA06994,NA07029,NA10863,NA12234,NA12264,NA12750,NA12751,NA18529,NA18547,NA18593,NA18949,NA18960 nsv518724 6 81341226 81355407 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696174 S 2026 0 1 "" nsv442993 6 81341677 81346253 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" essv19846 6 81342981 81346210 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12234 dgv1986e1 6 81342981 81357777 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv19297,essv21908 M 271 0 0 "" NA07022,NA10838 nsv508417 6 81347235 81387309 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622552 S 4 0 1 "" NA18994 nsv7934 6 81355797 81360594 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14152 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18942 essv1974 6 81357777 81360930 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18942 nsv507344 6 81524713 81530713 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621848 S 4 1 0 "" NA10860 nsv517853 6 81586058 81664102 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695257 S 2026 1 0 "" nsv516345 6 81593316 81611183 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv667717,nssv657356 M 2026 0 2 "" nsv516497 6 81653169 81672310 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv670621,nssv680073,nssv668688 M 2026 0 3 "" nsv830709 6 81671846 81849966 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445475 S 95 0 1 "" nsv508418 6 81672870 81695684 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622553 S 4 0 1 "" NA18994 nsv830710 6 81784421 81945758 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445476 S 95 1 0 "" nsv830711 6 81828294 81993941 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445477 S 95 0 1 "" nsv463936 6 81841622 81950044 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv539952 S 1557 1 0 "" NINDS_208 dgv1987e1 6 81870395 81891996 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv292,essv21148 M 271 0 0 "" NA12815 nsv5372 6 81969404 82014431 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8270 S 9 0 1 "" NA12156 esv34899 6 82147477 82217840 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6987370,essv6978308,essv6989014 M 771 0 1 "" NA18998 dgv1988e1 6 82154779 82217840 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv615,esv966 M 271 0 0 "" NA18998 nsv818440 6 82177366 82190504 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416642 S 112 0 1 "" NA19116 essv2954 6 82180584 82217840 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18972 nsv7935 6 82193230 82231687 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17033 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18972 nsv442004 6 82203843 82228325 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv517168 6 82375893 82382248 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv653914,nssv653969,nssv656482,nssv667234 M 2026 0 4 "" nsv350073 6 82405997 82405997 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368651 M 24 "" nsv507345 6 82494276 82500276 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622980,nssv617713 M 4 2 0 "" CHM,NA18994 nsv830712 6 82547748 82711250 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445478 S 95 0 1 "" nsv524718 6 82685455 82688968 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700703 S 2026 0 1 "" nsv830713 6 82817920 83010289 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445479 S 95 1 0 "" nsv527345 6 82850830 82854338 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703772 S 2026 0 1 "" nsv830715 6 82863376 83013046 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445482,nssv1445481,nssv1445480 M 95 0 3 "" nsv7937 6 82896954 83301507 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14625 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18537 nsv5373 6 83005633 83043434 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9892,nssv6076,nssv4928,nssv3452,nssv10509,nssv563,nssv2601 M 9 7 0 "" NA12156,NA12878,NA18507,NA18555,NA18956,NA19129,NA19240 nsv510926 6 83007046 83041054 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618652 S 4 0 0 "" CHM nsv509142 6 83016921 83041054 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620857,nssv619455,nssv623482 M 4 3 0 "" NA10860,NA15510,NA18994 nsv348668 6 83151393 83151444 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367246 M 24 "" nsv349254 6 83174028 83174095 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367832 M 24 "" nsv830716 6 83272376 83437461 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445483 S 95 1 0 "" nsv830717 6 83480539 83633087 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445485 S 95 0 1 "" nsv525171 6 83502009 83504231 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701247 S 2026 0 1 "" nsv528433 6 83673241 83710421 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705026 S 2026 0 1 "" dgv387n21 6 83687310 83734272 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv522981,nsv521925 M 2026 0 2 "" nsv518229 6 84285833 84290550 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695659 S 2026 0 1 "" nsv5374 6 84308454 84342860 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3454 S 9 1 0 "" NA12878 nsv830718 6 84548248 84707785 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445486,nssv1445487 M 95 1 1 "" nsv5375 6 84579279 84609348 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2728 S 9 1 0 "" NA18555 nsv830719 6 84696656 84884292 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445488 S 95 1 0 "" nsv5377 6 84762867 84798376 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4929 S 9 0 1 "" NA19129 dgv1989e1 6 84790018 84853288 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv11384,esv1293 M 271 0 0 "" NA19127 essv14922 6 84792906 84825829 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19129 nsv7938 6 84801686 84805262 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15059 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19173 nsv5378 6 84802417 84824462 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8271 S 9 0 1 "" NA12156 nsv519202 6 84934535 84939926 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696687 S 2026 0 1 "" nsv5379 6 84940630 84977543 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2602,nssv565 M 9 2 0 "" NA18555,NA19240 nsv525351 6 85115724 85117006 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701470 S 2026 0 1 "" nsv830720 6 85135234 85359703 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445489 S 95 1 0 "" nsv5380 6 85355534 85406757 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4930,nssv3455,nssv566,nssv9695 M 9 0 4 "" NA12878,NA18507,NA19129,NA19240 nsv508419 6 85371697 85382283 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619977 S 4 0 1 "" NA15510 nsv510937 6 85371697 85390105 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618690,nssv624309 M 4 0 0 "" CHM,NA18994 nsv5381 6 85734201 85767961 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv567 S 9 1 0 "" NA19240 nsv520873 6 85881042 85890923 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv676670,nssv678561,nssv703729 M 2026 0 3 "" nsv830721 6 86044363 86204133 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445490 S 95 1 0 "" nsv348714 6 86083085 86083399 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367292 M 24 "" nsv349880 6 86130456 86130456 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368458 M 24 "" nsv5382 6 86153116 86184836 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4931 S 9 1 0 "" NA19129 nsv520112 6 86201594 86304478 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697229 S 2026 0 1 "" nsv463939 6 86262042 86336456 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv539954 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00208 nsv516516 6 86291554 86335410 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv679849,nssv669782,nssv687806,nssv699272,nssv668794,nssv678496,nssv684014,nssv677138 M 2026 1 7 "" nsv5383 6 86359942 86404742 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8272 S 9 0 1 "" NA12156 dgv388n21 6 86595437 86633573 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv515896,nsv526067 M 2026 0 53 "" nsv818441 6 86602842 86622662 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417871,nssv1417869 M 112 0 2 "" NA18852,NA18854 nsv522858 6 86607704 86635552 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698513 S 2026 1 0 "" nsv463940 6 86633573 86705155 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv539955 S 1557 0 1 "" 1780854039_A nsv519457 6 86646009 86706424 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701397,nssv662953,nssv656255 M 2026 2 1 "" nsv5384 6 86740760 86784643 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9696,nssv6077,nssv2603,nssv4932,nssv9431,nssv568,nssv3456 M 9 0 7 "" NA12156,NA12878,NA18507,NA18517,NA18555,NA19129,NA19240 nsv508420 6 86758270 86808592 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618793,nssv622554,nssv617525,nssv619978 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv463943 6 87001318 87032869 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv539956 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00696 nsv517050 6 87132204 87134894 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv676564,nssv674067,nssv672008,nssv653691 M 2026 0 4 "" nsv524426 6 87132204 87146255 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700353 S 2026 0 1 "" nsv528682 6 87166330 87169891 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705324 S 2026 0 1 "" nsv521531 6 87395345 87397358 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698148 S 2026 0 1 "" nsv437516 6 87462864 87482807 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467397 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19139 nsv7939 6 87462897 87475341 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16671 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18860 nsv515907 6 87464993 87465098 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv691197,nssv657541,nssv673723,nssv683149,nssv693919,nssv691429,nssv690354,nssv686116,nssv684057,nssv683965,nssv669326,nssv687337,nssv652286,nssv676062,nssv662031,nssv668064,nssv660914,nssv671595,nssv670054,nssv677542,nssv666403,nssv679743,nssv692179,nssv651752,nssv675551,nssv685387,nssv661028,nssv659788,nssv676946,nssv682361,nssv689276,nssv683812,nssv673807,nssv655572 M 2026 0 34 "" nsv442994 6 87466524 87467835 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv1990e1 6 87513222 87701933 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv20285,essv22237,essv17714,essv12704,essv4389,essv22541,essv23186,essv21705,essv15206,essv11674,essv23982,essv8742,essv19418,essv13143,essv19895,essv14118,essv21126,essv17835,essv19100,essv15006,essv19490,essv24990,essv19174,essv683,essv15654,essv5799,esv361,essv22753,essv1959,essv17466,essv23031,essv15525 M 271 0 0 "" NA07019,NA07055,NA07348,NA10831,NA10839,NA11840,NA12043,NA12044,NA12144,NA12156,NA12248,NA12716,NA12812,NA12813,NA12815,NA12864,NA12865,NA12872,NA18505,NA18566,NA18573,NA18861,NA18870,NA18912,NA18914,NA18959,NA18975,NA19092,NA19094,NA19102,NA19154 nsv520489 6 87554494 87602499 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697449 S 2026 0 1 "" nsv7940 6 87619165 87642839 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15789 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA12740 nsv5385 6 87837734 87860382 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8273 S 9 0 1 "" NA12156 dgv1991e1 6 87874602 88049676 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv463,essv16408 M 271 0 0 "" NA19139 nsv349705 6 87895090 87895174 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368283 M 24 "" nsv507346 6 88077424 88083424 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620348,nssv621849,nssv622981 M 4 3 0 "" NA10860,NA15510,NA18994 nsv349083 6 88089469 88089555 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367661 M 24 "" nsv5386 6 88095270 88101640 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8274 S 9 0 1 "" NA12156 nsv830722 6 88110905 88280344 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445493,nssv1445492,nssv1445491,nssv1445494,nssv1445497,nssv1445496 M 95 6 0 "" dgv1992e1 6 88415707 88498192 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv22906,essv22664,esv44,essv18741 M 271 0 0 "" NA12752,NA12760,NA12874 nsv7941 6 88460274 88470314 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17063 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18972 nsv5388 6 88740334 88774559 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3457 S 9 1 0 "" NA12878 dgv775n27 6 88898873 88918417 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv463945,nsv463944 M 1557 2 0 "" HGDP00033,HGDP00726 nsv519365 6 88898873 88918417 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv655820,nssv672540,nssv677824,nssv655655,nssv663742 M 2026 5 0 "" nsv830723 6 88922418 88986995 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445498 S 95 0 1 "" nsv5389 6 89003119 89036538 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3458 S 9 1 0 "" NA12878 dgv1993e1 6 89147456 89318637 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv45,essv834,essv5159,esv139,essv2519,essv5086 M 271 0 0 "" NA18564,NA18577,NA18973,NA18991,NA19003 nsv518278 6 89209198 89219718 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695709 S 2026 1 0 "" nsv510040 6 89275876 89281876 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618240,nssv622121 M 4 0 2 "" CHM,NA10860 nsv5390 6 89380083 89426690 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6078 S 9 0 1 "" NA12156 nsv528054 6 89483947 89489081 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704587 S 2026 0 1 "" nsv507347 6 89794470 89800470 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621850 S 4 1 0 "" NA10860 nsv818442 6 89811469 89816359 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418001 S 112 1 0 "" NA07345 nsv527444 6 90051670 90056015 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703885 S 2026 0 1 "" nsv521230 6 90053124 90056015 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv689928,nssv686560 M 2026 0 2 "" nsv526732 6 90053124 90062644 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703073 S 2026 0 1 "" nsv526829 6 90177710 90184109 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703186 S 2026 0 1 "" nsv5391 6 90603477 90635640 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4933 S 9 1 0 "" NA19129 nsv525515 6 90687853 90691837 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701648 S 2026 0 1 "" nsv507348 6 91064550 91070550 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621851 S 4 1 0 "" NA10860 nsv523939 6 91124344 91847214 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699785 S 2026 1 0 "" nsv5392 6 91181892 91227487 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6079 S 9 0 1 "" NA12156 nsv520901 6 91402622 91403386 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv677249,nssv678624 M 2026 0 2 "" nsv527300 6 91451780 91466661 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703718 S 2026 0 1 "" nsv830724 6 91465374 91628193 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445503,nssv1445504,nssv1445501,nssv1445502,nssv1445500,nssv1445499 M 95 6 0 "" nsv5393 6 91488201 91521891 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3459 S 9 1 0 "" NA12878 nsv509143 6 91726150 91737528 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619456,nssv618054 M 4 2 0 "" CHM,NA10860 nsv508421 6 91763898 91768857 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619979 S 4 0 1 "" NA15510 nsv463946 6 91767593 91826328 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv539959 S 1557 0 1 "" 1780862014_A esv2752130 6 91797168 92253200 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6984154,essv6987510,essv6988763 M 771 1 0 "" BEC_789 nsv830726 6 91807413 91978559 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445505 S 95 1 0 "" esv2422475 6 91875229 92055469 CNV Deletion Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161407 S 181 0 1 "" ND00745 nsv523380 6 91971586 91999464 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699129 S 2026 0 1 "" nsv830727 6 92045101 92212302 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445507 S 95 0 1 "" nsv519150 6 92052457 92174498 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696627 S 2026 0 1 "" esv2752131 6 92061024 92158424 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6982625,essv6989659 M 771 0 1 "" BEC_572 nsv463947 6 92071511 92124447 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv539960 S 1557 0 1 "" 1780854009_A nsv527394 6 92118422 92124447 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703829 S 2026 0 1 "" nsv517922 6 92421807 92427399 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695333 S 2026 1 0 "" nsv521262 6 92427399 92433073 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv689437,nssv693359 M 2026 0 2 "" nsv349415 6 92617131 92617190 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367993 M 24 "" nsv830728 6 92621100 92842643 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445509,nssv1445508 M 95 0 2 "" nsv528633 6 92658357 93257354 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705263 S 2026 1 0 "" nsv830729 6 92712464 92914768 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445510 S 95 1 0 "" nsv463948 6 92808789 92830499 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv539961 S 1557 0 1 "" 1780854538_A nsv5394 6 92817123 92861846 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8275 S 9 0 1 "" NA12156 nsv463952 6 92830499 92880688 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv539965 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00543 nsv830730 6 92937714 93108184 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445511 S 95 1 0 "" nsv463953 6 93005185 93029963 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv539966 S 1557 0 1 "" 1780862574_A nsv830731 6 93020175 93263897 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445514,nssv1445513,nssv1445512 M 95 3 0 "" nsv525866 6 93021332 93021725 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702064 S 2026 0 1 "" nsv463957 6 93110300 93136680 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv539967 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00019 nsv818443 6 93122057 93207521 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418276 S 112 1 0 "" NA19093 dgv1994e1 6 93127736 93161367 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv949,essv8394 M 271 0 0 "" NA19093 nsv524434 6 93130146 93207521 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700361 S 2026 1 0 "" dgv776n27 6 93156627 93196637 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv463959,nsv463958 M 1557 0 2 "" 1780854495_A,HGDP00948 nsv519355 6 93223487 93228784 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696808 S 2026 0 1 "" nsv517329 6 93305064 95581148 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv665911,nssv666928,nssv693301,nssv690170,nssv656663,nssv663364,nssv661209,nssv662939,nssv662062,nssv676089,nssv666486,nssv692352,nssv667368,nssv671557,nssv680310,nssv689525,nssv660636,nssv684445,nssv658002,nssv692085,nssv677250,nssv680074,nssv692952,nssv653585,nssv681133,nssv681628,nssv693672,nssv665278,nssv676947,nssv655158,nssv662157,nssv690692,nssv689774,nssv658726,nssv673213,nssv689773,nssv692133,nssv666085,nssv684412,nssv686242,nssv684655,nssv679031,nssv670425,nssv654143,nssv654234,nssv669675,nssv673497,nssv686253,nssv672643,nssv677107,nssv698035,nssv653047,nssv687418,nssv682457,nssv677332,nssv675680,nssv693505,nssv678156,nssv653195,nssv660042,nssv683150,nssv682098,nssv655798,nssv673441,nssv674423,nssv654486,nssv671688,nssv666485,nssv694564,nssv689221,nssv664325,nssv685969,nssv687036,nssv666835,nssv661643,nssv675552,nssv669202,nssv652585,nssv656292,nssv686653,nssv670055,nssv679450,nssv663267,nssv664764,nssv689005,nssv674037,nssv663292,nssv687654,nssv658133,nssv666184,nssv685004,nssv656711,nssv688895,nssv658902,nssv686883,nssv684374,nssv678058,nssv686769,nssv658462,nssv659342,nssv663713,nssv668026,nssv660852,nssv673975,nssv700819,nssv663960,nssv652911,nssv654654,nssv673738,nssv677108,nssv677139,nssv654299,nssv689222,nssv668027,nssv658646,nssv688622,nssv697264,nssv661946,nssv672271,nssv659998,nssv671629,nssv682425,nssv680577,nssv652184,nssv682004,nssv683247,nssv660378,nssv673883,nssv680362,nssv667476,nssv673412,nssv691660,nssv686473,nssv656985,nssv659642,nssv684722,nssv674462,nssv678084,nssv689026,nssv683629,nssv665620,nssv654596,nssv693584,nssv673724,nssv685107,nssv687601,nssv685317,nssv667130,nssv666883,nssv700673,nssv695626,nssv657626,nssv671481,nssv677742,nssv661430,nssv679330,nssv658079,nssv675454,nssv685567,nssv653127,nssv663589,nssv656555,nssv657087,nssv670128,nssv686319,nssv699707,nssv674618,nssv681859,nssv679099,nssv680441,nssv653831,nssv694298,nssv671596,nssv660697,nssv666528,nssv664014,nssv703111,nssv681613,nssv696610,nssv688941,nssv674577,nssv662779,nssv656815,nssv666223,nssv698301,nssv664069,nssv674443,nssv663092,nssv652149,nssv663012,nssv670379,nssv695655,nssv663906,nssv667413,nssv657304,nssv676671,nssv654022,nssv683813,nssv655953,nssv659789,nssv671158,nssv670664,nssv678977,nssv683455,nssv696389,nssv658270,nssv680564,nssv690618,nssv661087,nssv657431,nssv661700,nssv684702,nssv661502,nssv679411,nssv652606,nssv691430,nssv684915,nssv679603,nssv687506,nssv682893,nssv688670,nssv680474,nssv661479,nssv665920,nssv659027,nssv671245,nssv666424,nssv660280,nssv657446,nssv673036,nssv681540,nssv656870,nssv653801,nssv683601,nssv678022,nssv686192,nssv654737,nssv663961,nssv667984,nssv659118,nssv671726 M 2026 2 239 "" nsv5395 6 93554800 93588378 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv569 S 9 1 0 "" NA19240 nsv463960 6 93569046 93627153 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv539970 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01336 nsv349206 6 93581275 93581489 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367784 M 24 "" nsv463961 6 93599999 93664414 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv539971 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00469 dgv777n27 6 93620314 93632743 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv463963,nsv463964,nsv463965 M 1557 0 3 "" 1780862456_A,1780862466_A,NINDS_125 nsv463966 6 93628802 93635080 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv539976 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01414 nsv463967 6 93628802 93672171 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv539977 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00459 dgv124n17 6 93630617 93639259 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437517,nsv437518 M 60 0 2 "" NA19120,NA19208 nsv7942 6 93630862 93638899 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16182,nssv16573,nssv16707 M 31 0 3 Samples from several populations that are part of the HapMap project. "" NA18502,NA18504,NA19132 dgv778n27 6 93631870 93635080 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv463968,nsv463969 M 1557 0 2 "" HGDP00462,HGDP01408 nsv818446 6 93631870 93635080 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418277,nssv1418278,nssv1416643,nssv1418464,nssv1416843,nssv1415843,nssv1416356,nssv1416644,nssv1416741,nssv1418463,nssv1415842 M 112 0 11 "" NA10860,NA11993,NA18855,NA19093,NA19094,NA19116,NA19120,NA19159,NA19192,NA19193,NA19238 nsv437975 6 93632502 93635080 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv468817,nssv468815,nssv468816,nssv468814 M 269 0 4 Samples from several populations that are part of the HapMap project. "" NA19116,NA19120,NA19206,NA19208 nsv442995 6 93632587 93635351 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv1995e1 6 93634138 93728395 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1260,essv1000 M 271 0 0 "" NA18964 nsv5396 6 93709920 93754828 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8276 S 9 0 1 "" NA12156 nsv348523 6 93877505 93880085 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367101 M 24 "" nsv348778 6 93891671 93891731 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367356 M 24 "" nsv463970 6 93977371 93999838 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv539980 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00005 nsv463971 6 93998582 94146797 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv539981 S 1557 1 0 "" 1780862401_A nsv507349 6 94057878 94063878 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620349,nssv622982,nssv621852,nssv617714 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv830732 6 94217351 94366652 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445515 S 95 0 1 "" nsv510041 6 94301903 94307903 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624009,nssv622122,nssv618241 M 4 0 3 "" CHM,NA10860,NA18994 nsv5397 6 94449107 94494033 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8277 S 9 0 1 "" NA12156 nsv830733 6 94546080 94707633 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445516 S 95 0 1 "" nsv508422 6 94616664 94638834 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618794 S 4 0 1 "" NA10860 nsv5399 6 94773529 94808513 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv570 S 9 1 0 "" NA19240 nsv830734 6 94789553 94945645 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445519 S 95 1 0 "" nsv463972 6 94814379 94857159 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv539982 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00820 nsv349817 6 94821433 94821433 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368395 M 24 "" nsv463974 6 94826614 95261999 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv539984 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00175 nsv510042 6 94848794 94854794 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624010 S 4 0 1 "" NA18994 nsv818447 6 95020388 95023735 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416550,nssv1416551 M 112 0 2 "" NA19172,NA19173 esv2422389 6 95188421 95286001 CNV Deletion Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161439 S 181 0 1 "" ND03627 nsv463975 6 95195753 95261999 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv539985 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00653 nsv5400 6 95235660 95279952 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2604 S 9 0 1 "" NA18555 dgv1996e1 6 95264814 95451409 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv6248,esv183 M 271 0 0 "" NA18636 nsv463976 6 95284434 95432041 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv539986 S 1557 0 1 "" NINDS_147 nsv7943 6 95288832 95293517 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16701 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18860 nsv830735 6 95319805 95396154 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445520 S 95 0 1 "" nsv7944 6 95345072 95350571 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14375,nssv13840,nssv14854,nssv14636 M 31 0 4 Samples from several populations that are part of the HapMap project. "" NA10839,NA10847,NA12802,NA19007 nsv463977 6 95384671 95455862 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv539987 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01177 nsv350181 6 95392344 95392648 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368759 M 24 "" nsv526484 6 95416725 95730630 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702793 S 2026 0 1 "" dgv389n21 6 95507138 95629110 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv522209,nsv518167 M 2026 0 2 "" dgv779n27 6 95507138 95667002 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv463978,nsv463979 M 1557 0 2 "" HGDP00948,HGDP01312 esv2752133 6 95517926 95616345 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6981879,essv6989536 M 771 0 1 "" BEC_497 esv2422515 6 95528847 96244974 CNV Deletion Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161326 S 181 0 1 "" ND05299 nsv527907 6 95543872 95613585 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704413 S 2026 0 1 "" nsv527516 6 95569913 95613585 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703970 S 2026 0 1 "" nsv523558 6 95601054 95676359 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699338 S 2026 0 1 "" nsv524504 6 95601054 95730630 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700448 S 2026 0 1 "" nsv518932 6 95623707 95629110 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696398 S 2026 0 1 "" nsv521688 6 95623707 95692216 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698308 S 2026 0 1 "" nsv521869 6 95676359 95692216 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694641 S 2026 0 1 "" nsv509144 6 95730914 95956237 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623483 S 4 1 0 "" NA18994 nsv463980 6 95942881 96142637 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv539990 S 1557 0 1 "" NINDS_174 nsv518549 6 96055581 96132167 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695992 S 2026 0 1 "" nsv830737 6 96199045 96360061 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445521 S 95 1 0 "" nsv528207 6 96476953 96481579 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704768 S 2026 1 0 "" esv2422431 6 96512980 96650397 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161543 S 181 1 0 "" ND04104 nsv519791 6 96530903 96534339 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697053 S 2026 0 1 "" nsv830738 6 96530946 96650755 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445523,nssv1445522 M 95 0 2 "" nsv349387 6 96590434 96590497 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367965 M 24 "" nsv349975 6 96590606 96590669 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368553 M 24 "" nsv528247 6 96657744 96713294 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704811 S 2026 1 0 "" nsv523783 6 96954941 96960300 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699608 S 2026 0 1 "" nsv5401 6 97009754 97039552 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9893 S 9 1 0 "" NA18507 nsv507350 6 97117741 97123741 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620350 S 4 1 0 "" NA15510 nsv510043 6 97218703 97224703 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621288,nssv624011 M 4 0 2 "" NA15510,NA18994 nsv516517 6 97301165 97315975 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv680131,nssv668795,nssv690693 M 2026 0 3 "" nsv5402 6 97517630 97531875 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10511 S 9 1 0 "" NA18956 nsv524695 6 97576111 97578292 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700674 S 2026 0 1 "" nsv830739 6 98171121 98353007 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445524 S 95 1 0 "" nsv5403 6 98182880 98215903 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8278 S 9 1 0 "" NA12156 nsv463981 6 98234675 98279701 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv539991 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00870 nsv830740 6 98250860 98381602 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445525 S 95 1 0 "" nsv519350 6 98348762 98370334 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv692766,nssv655532 M 2026 0 2 "" nsv463982 6 98360145 98435495 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv539992 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00092 nsv5404 6 98621268 98666042 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8279 S 9 0 1 "" NA12156 nsv508423 6 98757571 98812994 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622555 S 4 0 1 "" NA18994 nsv5405 6 98798596 98811915 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10512 S 9 1 0 "" NA18956 nsv350054 6 98800297 98800297 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368632 M 24 "" nsv510904 6 98861408 98901440 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624310 S 4 0 0 "" NA18994 nsv527947 6 98888574 98908361 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704455 S 2026 0 1 "" nsv507351 6 98889815 98895815 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617715,nssv621853,nssv620351 M 4 3 0 "" CHM,NA10860,NA15510 nsv349806 6 98983324 98984169 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368384 M 24 "" nsv5406 6 99017687 99058601 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv11130,nssv4935 M 9 2 0 "" NA15510,NA19129 nsv5407 6 99080150 99114838 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2729 S 9 1 0 "" NA18555 nsv517596 6 99382011 99386170 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv677904,nssv675681,nssv673229,nssv688364,nssv688826,nssv679250,nssv658756,nssv686391,nssv655954,nssv672036,nssv657432,nssv683368,nssv662128,nssv673131,nssv654130,nssv655222,nssv661480,nssv686474,nssv661947,nssv691298,nssv661887,nssv671362,nssv659180,nssv663176,nssv673116,nssv667969,nssv691661,nssv673934,nssv681049,nssv682993,nssv691211,nssv678381,nssv684513,nssv676967 M 2026 0 34 "" nsv507352 6 99741421 99747421 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621854,nssv617716 M 4 2 0 "" CHM,NA10860 nsv527517 6 99948777 99970699 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703971 S 2026 0 1 "" nsv463983 6 99989284 100028543 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv539993 S 1557 0 1 "" 1780862356_A dgv390n21 6 100078150 100079330 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv517990,nsv528990 M 2026 0 2 "" esv33881 6 100141423 100141972 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93656,essv99357,essv98503 M 51 3 0 "" 21972,22275,22352 nsv830741 6 100166296 100362726 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445526 S 95 1 0 "" nsv830742 6 100267981 100470819 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445527 S 95 1 0 "" nsv5408 6 100337711 100368558 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv11131 S 9 1 0 "" NA15510 esv2752086 6 100364000 100781771 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6984526,essv6984525,essv6984524,essv6987609,essv6987610 M 771 1 0 "" BEC_714 nsv524878 6 100587516 100587627 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700884 S 2026 0 1 "" nsv507353 6 100597859 100603859 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621855 S 4 1 0 "" NA10860 nsv522813 6 100647417 100669081 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698459 S 2026 1 0 "" nsv515895 6 100975500 101017519 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv687417,nssv692010,nssv684841,nssv667008,nssv688559,nssv692812,nssv671135,nssv683246,nssv672248,nssv673721,nssv665180,nssv677582,nssv674756,nssv700445,nssv677741,nssv674785,nssv657822 M 2026 0 17 "" nsv528283 6 101060604 101060757 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704853 S 2026 1 0 "" nsv463989 6 101145936 101185439 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv539995 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01355 nsv463990 6 101165607 101230224 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv539996 S 1557 0 1 "" 1782681096_A nsv521897 6 101230224 101265671 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694668 S 2026 0 1 "" nsv510044 6 101424730 101430730 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624012,nssv622123 M 4 0 2 "" NA10860,NA18994 nsv5411 6 101696187 101728948 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv571 S 9 1 0 "" NA19240 nsv5412 6 101904948 101937143 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2605 S 9 1 0 "" NA18555 nsv515487 6 101938033 101946730 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv668741,nssv653289,nssv682712 M 2026 0 3 "" nsv5413 6 102038580 102065674 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3460 S 9 0 1 "" NA12878 dgv125n17 6 102038819 102060248 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437519,nsv437520 M 60 0 2 "" NA18857,NA19142 nsv7945 6 102040642 102046912 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16212,nssv15691,nssv14655,nssv15088,nssv16603,nssv14884 M 31 0 6 Samples from several populations that are part of the HapMap project. "" NA10839,NA18502,NA18504,NA18537,NA19144,NA19240 esv32923 6 102041328 102045443 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98161,essv99777,essv99161,essv98401 M 51 0 4 "" 21772,22086,22275,22352 nsv507354 6 102118853 102124853 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622985,nssv617717,nssv620352 M 4 3 0 "" CHM,NA15510,NA18994 nsv521403 6 102221473 102222762 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698013 S 2026 0 1 "" nsv527973 6 102221473 102226522 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704486 S 2026 0 1 "" nsv830743 6 102390775 102565885 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445528 S 95 0 1 "" nsv463994 6 102409773 102453439 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv539997 S 1557 0 1 "" 1780862432_A nsv830744 6 102476454 102673430 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445531,nssv1445530 M 95 2 0 "" nsv463996 6 102678137 102709706 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv539999 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01255 nsv518086 6 102678137 102709706 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694199 S 2026 1 0 "" nsv518104 6 102774486 102777584 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695517 S 2026 0 1 "" nsv463997 6 102886028 102926652 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540000 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00798 nsv518846 6 102925456 102940548 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696299 S 2026 0 1 "" nsv5414 6 102946248 102960473 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3461 S 9 1 0 "" NA12878 nsv433237 6 103018562 103059703 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463118 S 9 0 1 "" NA15510 nsv463998 6 103059703 103116781 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540001 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00580 nsv463999 6 103158806 103243341 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540002 S 1557 0 1 "" 1780854495_A nsv524658 6 103186819 103214698 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700625 S 2026 1 0 "" nsv830745 6 103245426 103419134 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445532 S 95 0 1 "" nsv525677 6 103252767 103349725 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701834 S 2026 0 1 "" dgv1997e1 6 103255429 103412632 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv76,essv1914 M 271 0 0 "" NA18959 nsv830746 6 103338778 103529397 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445533 S 95 1 0 "" esv32973 6 103381419 103609341 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98686,essv101279 M 51 0 2 "" 21606,21805 nsv830748 6 103442960 103604028 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445534 S 95 1 0 "" dgv780n27 6 103547193 104324467 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv464000,nsv464002 M 1557 0 2 "" HGDP00683,HGDP00731 nsv830749 6 103584024 103711907 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445535 S 95 0 1 "" nsv464001 6 103621912 103769114 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540004 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00972 nsv507355 6 103758258 103764258 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621856,nssv620353 M 4 2 0 "" NA10860,NA15510 nsv288 6 103818151 103874226 CNV Loss Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv288 S 1 0 1 "" NA15510 nsv5415 6 103818151 103889533 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv11132,nssv6081,nssv2606,nssv3462 M 9 0 4 "" NA12156,NA12878,NA15510,NA18555 nsv437976 6 103829908 103868154 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv468833,nssv468842,nssv468865,nssv468827,nssv468861,nssv468823,nssv468854,nssv468869,nssv468859,nssv468849,nssv468866,nssv468860,nssv468862,nssv468831,nssv468826,nssv468825,nssv468843,nssv468835,nssv468821,nssv468850,nssv468856,nssv468873,nssv468876,nssv468855,nssv468880,nssv468838,nssv468878,nssv468819,nssv468877,nssv468871,nssv468828,nssv468839,nssv468872,nssv468832,nssv468837,nssv468858,nssv468874,nssv468870,nssv468820,nssv468848,nssv468822,nssv468830,nssv468841,nssv468863,nssv468879,nssv468824,nssv468857,nssv468847,nssv468834,nssv468844,nssv468867,nssv468846,nssv468845,nssv468836,nssv468868 M 269 0 48 Samples from several populations that are part of the HapMap project. "" NA07000,NA07029,NA07048,NA07055,NA10831,NA10835,NA10838,NA10839,NA10846,NA10851,NA10855,NA11832,NA12004,NA12006,NA12057,NA12145,NA12156,NA12249,NA12707,NA12716,NA12717,NA12753,NA12762,NA12801,NA12802,NA12812,NA12815,NA12865,NA12875,NA12878,NA12891,NA18500,NA18502,NA18852,NA18854,NA18862,NA18863,NA18913,NA18914,NA19099,NA19100,NA19119,NA19120,NA19130,NA19131,NA19132,NA19203,NA19205 dgv1998e1 6 103834514 103911696 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv21277,essv14377,essv3200,essv14494,essv22068,essv10482,essv290,essv16704,essv20440,essv8473,essv18219,essv65,essv3455,essv23791,essv24233,essv3898,essv18078,essv1792,essv18926,essv22570,essv15063,essv1383,essv1513,essv8763,essv11042,essv14991,essv22965,essv14615,essv15229,essv22672,essv19427,essv12610,essv8094,essv12243,essv13154,essv8322,essv7184,essv18624,essv15740,essv24788,essv12772,essv9869,essv10129,essv16110,essv20322,essv20917,essv11200,essv16999,essv10386,essv12339,essv20291,essv9629,essv8796,essv19646,essv23461,essv16444,essv11672,essv3018,essv11980,essv8611,essv14310,essv18451,essv7834,essv10576,essv13630,essv4650,essv6189,essv6253,essv2058,essv21700,essv23340,essv13064,essv16903,essv21175,essv13828,essv21818,essv10629,essv19272,essv19923,essv11443,essv8339,essv17486,essv6346,essv13005,essv9129,essv15609,essv14076,essv23938,essv15312,essv10041,essv11171,essv18340,essv15876,essv16800,essv11852,essv17042,essv15632,essv9727,essv16281,essv10918,essv21768,essv9473,essv25004,essv18247,essv22456,essv3791,essv14763,essv765,essv1475,essv3702,essv20563,essv3965,essv6596,essv23174,essv16042,essv4676,essv5150,essv17984,essv23456,essv11949,essv17244,essv24686,essv20066,essv16528,essv11790,essv14151,essv15463,essv3096,essv20123 M 271 0 0 "" NA07034,NA07048,NA07056,NA07345,NA07348,NA07357,NA10830,NA10838,NA10839,NA10846,NA10854,NA10855,NA10856,NA10860,NA11829,NA11830,NA11831,NA11839,NA11840,NA11994,NA12003,NA12005,NA12057,NA12144,NA12145,NA12154,NA12156,NA12234,NA12236,NA12239,NA12248,NA12264,NA12750,NA12752,NA12761,NA12762,NA12763,NA12801,NA12813,NA12814,NA18501,NA18502,NA18503,NA18504,NA18505,NA18507,NA18508,NA18515,NA18516,NA18517,NA18532,NA18547,NA18558,NA18564,NA18594,NA18609,NA18621,NA18622,NA18636,NA18852,NA18854,NA18855,NA18857,NA18858,NA18859,NA18860,NA18861,NA18862,NA18870,NA18872,NA18912,NA18913,NA18943,NA18944,NA18947,NA18949,NA18956,NA18969,NA18970,NA18974,NA18978,NA18980,NA18981,NA18991,NA18992,NA18994,NA18997,NA19007,NA19092,NA19093,NA19094,NA19098,NA19099,NA19100,NA19101,NA19102,NA19103,NA19120,NA19127,NA19129,NA19130,NA19131,NA19137,NA19138,NA19139,NA19140,NA19141,NA19142,NA19143,NA19144,NA19145,NA19154,NA19159,NA19161,NA19172,NA19194,NA19202,NA19204,NA19205,NA19206,NA19208,NA19209,NA19210,NA19211,NA19221,NA19222,NA19223,NA19239,NA19240 dgv1999e1 6 103834514 104012090 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2812,esv253 M 271 0 0 "" NA18987 nsv464003 6 103834851 103908333 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540006 S 1557 0 1 "" 1780862042_A nsv508424 6 103843719 103890455 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619980,nssv618795 M 4 0 2 "" NA10860,NA15510 nsv7946 6 103843851 103874162 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16633,nssv13541,nssv15336,nssv16242,nssv14575,nssv16272,nssv14973,nssv14988,nssv14666,nssv17123,nssv13900,nssv14647,nssv14435,nssv14510,nssv14182,nssv14540,nssv17400,nssv13549,nssv13870,nssv15148,nssv14914,nssv17294,nssv15721,nssv16731,nssv15089 M 31 22 0 Samples from several populations that are part of the HapMap project. "" NA07048,NA10839,NA10847,NA10863,NA11830,NA12802,NA12872,NA18502,NA18504,NA18517,NA18564,NA18572,NA18853,NA18860,NA18942,NA18972,NA18980,NA19007,NA19144,NA19173,NA19221,NA19240 nsv442996 6 103844669 103868754 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" esv33808 6 103845112 103868183 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98685,essv97609,essv100892,essv98142,essv94695,essv101355,essv94475,essv96936,essv95625,essv95476,essv93107,essv99047,essv93631,essv100097,essv99698,essv99332,essv98472 M 51 17 0 "" 21606,21616,21656,21772,21791,21805,21808,21817,21841,21847,21863,21938,21972,22086,22217,22275,22352 dgv126n17 6 103845442 103874049 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437011,nsv437009,nsv437521,nsv437012,nsv437010 M 60 0 5 "" NA10846,NA10863,NA12753,NA12878,NA19100 nsv7948 6 103885514 103891644 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17460 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19221 nsv349717 6 103938719 103938719 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368295 M 24 "" nsv830750 6 104049995 104244359 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445536 S 95 1 0 "" nsv526882 6 104086057 104093395 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703240 S 2026 1 0 "" nsv818448 6 104093395 104099986 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416940,nssv1416938 M 112 0 2 "" NA19137,NA19139 nsv442005 6 104096781 104100508 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv516048 6 104097165 104099986 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv658514,nssv692949,nssv677329,nssv667367,nssv665880 M 2026 0 5 "" nsv818449 6 104097165 104099986 CNV Gain+Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418279,nssv1418280 M 112 1 1 "" NA19092,NA19093 nsv523440 6 104161965 104163815 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699196 S 2026 0 1 "" nsv5416 6 104200709 104245777 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8280 S 9 0 1 "" NA12156 nsv348529 6 104295023 104295078 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367107 M 24 "" nsv519440 6 104377426 104410496 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696856 S 2026 0 1 "" nsv5417 6 104402715 104447089 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2607 S 9 0 1 "" NA18555 nsv464004 6 104402947 104425902 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540007 S 1557 0 1 "" 1780862404_A nsv830751 6 104428481 104566948 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445537 S 95 1 0 "" nsv520377 6 104441372 104569248 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv663384,nssv693195,nssv695935 M 2026 0 3 "" nsv5418 6 104475045 104510057 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3463 S 9 1 0 "" NA12878 nsv830752 6 104539718 104712824 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445539,nssv1445541,nssv1445538 M 95 1 2 "" esv33050 6 104601060 104606797 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100762 S 51 1 0 "" 21656 nsv518256 6 104619535 104630753 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695686 S 2026 0 1 "" nsv830753 6 104729983 104926007 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445542 S 95 1 0 "" nsv523299 6 104803799 104813272 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699039 S 2026 0 1 "" nsv464005 6 105003611 105037476 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540008 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00572 nsv464007 6 105003611 105041172 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540010 S 1557 1 0 "" 1798860306_A dgv781n27 6 105017541 105041172 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv464009,nsv464018,nsv464019,nsv464014,nsv464010,nsv464015,nsv464016,nsv464012,nsv464013 M 1557 9 0 "" 1780862042_A,HGDP00573,HGDP00601,HGDP00606,HGDP00611,HGDP01067,HGDP01076,HGDP01399,NINDS_228 dgv782n27 6 105017541 105041172 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv464008,nsv464011 M 1557 0 2 "" HGDP00218,HGDP00653 nsv516341 6 105023257 105051292 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv693355,nssv671421,nssv680561,nssv656151,nssv684550,nssv675749,nssv667692,nssv692822,nssv662609,nssv660095 M 2026 10 0 "" nsv5419 6 105131540 105175931 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4605 S 9 0 1 "" NA19129 nsv5420 6 105242744 105289259 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6082 S 9 0 1 "" NA12156 nsv464020 6 105280227 105407263 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540023 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00169 dgv2000e1 6 105302783 105806657 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv24052,essv19882,esv502,essv17664 M 271 0 0 "" NA10859,NA11881 nsv5422 6 105332220 105376762 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4936 S 9 0 1 "" NA19129 nsv5423 6 105334881 105368499 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv572 S 9 1 0 "" NA19240 nsv7949 6 105366523 105378101 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17490 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19221 dgv216e55 6 105439613 105694320 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv34842,esv34996 M 771 2 0 "" NA10859,NA11881 essv19736 6 105439613 105725669 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA10859 nsv818450 6 105445489 105692204 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418079,nssv1418078 M 112 2 0 "" NA10859,NA11881 nsv830754 6 105506886 105701670 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445543 S 95 1 0 "" nsv7950 6 105690707 105693122 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16791 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18860 nsv7951 6 105748494 105754351 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17520 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19221 nsv516715 6 105758864 105768143 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv670377,nssv680056 M 2026 0 2 "" nsv7952 6 105764784 105767408 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14570 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18853 nsv5424 6 105764990 105795130 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv11133 S 9 1 0 "" NA15510 nsv522108 6 106078743 106089932 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694880 S 2026 0 1 "" nsv523345 6 106098610 106102241 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699094 S 2026 1 0 "" nsv5425 6 106124905 106156675 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10513 S 9 1 0 "" NA18956 nsv5426 6 106203960 106249139 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8281 S 9 0 1 "" NA12156 nsv5427 6 106404843 106449395 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2610 S 9 0 1 "" NA18555 nsv348861 6 106450082 106453886 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367439 M 24 "" nsv5428 6 106461084 106495281 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8282 S 9 1 0 "" NA12156 nsv349367 6 106464179 106464233 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367945 M 24 "" nsv830755 6 106568398 106730895 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445544 S 95 0 1 "" nsv349815 6 106615689 106615786 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368393 M 24 "" nsv5429 6 106651899 106681954 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv573 S 9 1 0 "" NA19240 dgv391n21 6 106782512 106810311 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv521859,nsv520329 M 2026 3 0 "" nsv5430 6 106941979 106965192 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4937 S 9 1 0 "" NA19129 nsv348554 6 107035526 107035841 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367132 M 24 "" nsv516902 6 107211067 107222087 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv678541,nssv676647,nssv692586,nssv682470,nssv654786 M 2026 0 5 "" nsv7383 6 107237698 107277239 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9697 S 9 0 0 "" NA18507 nsv830756 6 107334854 107409954 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445545 S 95 0 1 "" nsv508425 6 107392574 107463989 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622556 S 4 0 1 "" NA18994 nsv509145 6 107392574 107463989 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620859 S 4 1 0 "" NA15510 nsv510909 6 107392574 107463989 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622376,nssv618653 M 4 0 0 "" CHM,NA10860 dgv87n68 6 107424877 107624768 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH nsv830757,nsv830761 M 95 0 4 "" nsv5431 6 107454507 107488784 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3465 S 9 1 0 "" NA12878 nsv521601 6 107506050 107506663 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694464 S 2026 0 1 "" nsv525833 6 107546250 107556334 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702023 S 2026 0 1 "" nsv516308 6 107555373 107556334 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv674393,nssv667474,nssv691684 M 2026 0 3 "" nsv516771 6 107582911 107588154 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv692857,nssv660417,nssv670741 M 2026 0 3 "" nsv830762 6 107760644 107958887 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445550 S 95 1 0 "" nsv830763 6 107962340 108147797 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445552 S 95 1 0 "" nsv349993 6 108082694 108082694 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368571 M 24 "" nsv830764 6 108095403 108271402 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445553 S 95 1 0 "" nsv464022 6 108104835 108124555 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540024 S 1557 0 1 "" 1780862226_A nsv349488 6 108138036 108139079 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368066 M 24 "" nsv830765 6 108218104 108409471 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445554 S 95 0 1 "" nsv348411 6 108372815 108373117 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv366989 M 24 "" nsv830766 6 108594506 108770399 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445557,nssv1445556,nssv1445555 M 95 0 3 "" nsv515515 6 108718559 108719760 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv656440,nssv670619,nssv675514,nssv676622,nssv660361,nssv670127,nssv654871,nssv656938,nssv682387,nssv671422,nssv672817,nssv688287,nssv693073,nssv657353,nssv689816,nssv664188,nssv659058,nssv693792,nssv662282,nssv685915,nssv673955,nssv671330,nssv672034,nssv668495,nssv653414,nssv656173 M 2026 0 26 "" nsv830767 6 108904464 109095612 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445558 S 95 1 0 "" nsv5433 6 109070186 109098842 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2611 S 9 1 0 "" NA18555 nsv5434 6 109120501 109155068 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2730 S 9 1 0 "" NA18555 nsv518105 6 109186199 109186957 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695518 S 2026 0 1 "" nsv517871 6 109214461 109216789 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695277 S 2026 0 1 "" nsv830768 6 109283961 109464293 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445559 S 95 1 0 "" nsv527657 6 109640078 109686368 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704128 S 2026 1 0 "" nsv527719 6 109731630 109738302 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704200 S 2026 0 1 "" nsv5435 6 109739728 109775820 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6083 S 9 0 1 "" NA12156 esv33427 6 109858150 109858902 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99461 S 51 0 1 "" 22335 nsv510045 6 109909952 109915952 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618242 S 4 0 1 "" CHM nsv510046 6 109949909 109955909 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622124,nssv624013,nssv618243,nssv621289 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv7953 6 109991846 110000256 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14605 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18980 nsv830769 6 110051027 110184813 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445560 S 95 1 0 "" nsv5436 6 110159505 110204355 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8283 S 9 0 1 "" NA12156 nsv5437 6 110229265 110262685 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3466 S 9 1 0 "" NA12878 nsv523774 6 110338744 110395469 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699596 S 2026 0 1 "" nsv5438 6 110346163 110376808 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4938 S 9 1 0 "" NA19129 nsv526261 6 110388400 110392108 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702533 S 2026 0 1 "" dgv392n21 6 110443436 110443986 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv525103,nsv516554 M 2026 0 9 "" dgv2001e1 6 110496619 110611373 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv18881,esv1151,essv21946 M 271 0 0 "" NA07000,NA07029 nsv7954 6 110502679 110520058 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14492 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA07029 esv33686 6 110502812 110520003 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100244,essv100307 M 51 0 2 "" 22286,22300 nsv348708 6 110570870 110575241 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367286 M 24 "" esv33528 6 110583102 110589000 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100857 S 51 0 1 "" 21656 nsv5439 6 110643193 110678349 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv575 S 9 1 0 "" NA19240 nsv516397 6 110843077 110854442 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv668062,nssv668023 M 2026 2 0 "" nsv830770 6 110941778 111130824 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445561 S 95 0 1 "" nsv830772 6 111050019 111242190 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445563 S 95 1 0 "" nsv516177 6 111180056 111217820 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv666636,nssv693807 M 2026 0 2 "" nsv830773 6 111241012 111413125 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445564 S 95 0 1 "" nsv509148 6 111375271 111395332 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623484 S 4 1 0 "" NA18994 nsv5440 6 111548013 111581957 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv576 S 9 1 0 "" NA19240 nsv5441 6 111591966 111620108 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8284 S 9 1 0 "" NA12156 nsv509149 6 111592102 111609157 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618055 S 4 1 0 "" CHM nsv5442 6 111763654 111796161 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10514 S 9 1 0 "" NA18956 nsv349315 6 111850461 111850546 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367893 M 24 "" nsv5444 6 112086359 112118705 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10515 S 9 1 0 "" NA18956 esv2752088 6 112130000 112182000 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6983651,essv6983650 M 771 1 0 "" BEC_676 nsv5445 6 112258078 112302476 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4606 S 9 0 1 "" NA19129 nsv5446 6 112313696 112343031 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9894,nssv577 M 9 0 2 "" NA18507,NA19240 nsv510905 6 112328341 112343107 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618691 S 4 0 0 "" CHM nsv349467 6 112331120 112336351 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368045 M 24 "" nsv830774 6 112359297 112490708 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445565 S 95 1 0 "" nsv522587 6 112828477 112833077 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705974 S 2026 1 0 "" nsv524842 6 112997212 113002826 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700844 S 2026 0 1 "" nsv508427 6 113214773 113233807 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619981 S 4 0 1 "" NA15510 nsv437522 6 113258756 113285727 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467403 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19100 nsv830775 6 113284541 113492383 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445585,nssv1445575,nssv1445567,nssv1445574,nssv1445569,nssv1445576,nssv1445578,nssv1445579,nssv1445580,nssv1445589,nssv1445583,nssv1445582,nssv1445581,nssv1445570,nssv1445586,nssv1445591,nssv1445590,nssv1445592,nssv1445594,nssv1445593,nssv1445596,nssv1445588,nssv1445568,nssv1445577,nssv1445566,nssv1445587,nssv1445572,nssv1445571 M 95 27 1 "" nsv516837 6 113291385 113291459 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv681920,nssv654348 M 2026 0 2 "" nsv830776 6 113350388 113540196 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445597 S 95 0 1 "" nsv830777 6 113443711 113632100 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445598 S 95 1 0 "" nsv516658 6 113701643 113704806 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv672192,nssv669941,nssv690742 M 2026 0 3 "" nsv830778 6 113768704 113836497 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445599 S 95 1 0 "" nsv518991 6 113867219 113906311 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696458 S 2026 1 0 "" nsv522088 6 113895049 113916278 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694860 S 2026 0 1 "" nsv464023 6 114178413 114220750 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540025 S 1557 0 1 "" 1780862373_A nsv482098 6 114285220 114291345 CNV Loss Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558459 S 1 0 1 "" KB1 nsv830779 6 114313227 114352792 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445600 S 95 0 1 "" nsv520419 6 114391946 114413307 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv671331,nssv676787 M 2026 0 2 "" esv34434 6 114571998 115569492 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6978401,essv6978400,essv6978399,essv6978398,essv6986607 M 771 1 0 "" NA19092 nsv464024 6 114596014 114943874 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540026 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00872 esv33752 6 114664453 114709175 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99556 S 51 1 0 "" 22335 dgv2002e1 6 114671437 115749378 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv8749,essv10980,esv837 M 271 0 0 "" NA19092 nsv528128 6 114704350 115577822 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704673 S 2026 1 0 "" nsv818451 6 114704350 115577822 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418282 S 112 1 0 "" NA19092 nsv348849 6 114769014 114769079 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367427 M 24 "" dgv393n21 6 114782752 114784523 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv519688,nsv526353 M 2026 0 2 "" nsv7955 6 114803526 114805631 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14212 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18942 nsv7384 6 115053644 115790151 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6084 S 9 0 0 "" NA12156 nsv830780 6 115059372 115259434 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445601 S 95 1 0 "" nsv5447 6 115077889 115122898 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8285 S 9 0 1 "" NA12156 nsv7956 6 115165425 115172472 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17324,nssv14635 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18517,NA18980 nsv516738 6 115292115 115314099 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv677989,nssv689616,nssv670544 M 2026 0 3 "" nsv522607 6 115347078 115505852 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705999 S 2026 1 0 "" esv33632 6 115388610 115432398 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99531 S 51 0 1 "" 22335 nsv830781 6 115420287 115611790 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445602 S 95 1 0 "" nsv7957 6 115421781 115424862 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16737,nssv16663,nssv17550 M 31 0 3 Samples from several populations that are part of the HapMap project. "" NA18504,NA19132,NA19221 nsv7959 6 115431837 115433813 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17354 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18517 nsv7960 6 115435436 115452417 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17384,nssv15178,nssv16797,nssv16693,nssv15149 M 31 0 5 Samples from several populations that are part of the HapMap project. "" NA18504,NA18517,NA19132,NA19144,NA19173 nsv7961 6 115492678 115494943 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14685,nssv13579,nssv15819,nssv14677,nssv14944,nssv15018,nssv14242 M 31 7 0 Samples from several populations that are part of the HapMap project. "" NA10839,NA11830,NA12740,NA18537,NA18564,NA18572,NA18942 nsv527544 6 115505852 115767631 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704005 S 2026 1 0 "" nsv521576 6 115535325 115707362 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698192 S 2026 1 0 "" nsv7962 6 115637304 115688314 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16302 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18502 dgv2003e1 6 115895071 116068349 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv473,essv5447 M 271 0 0 "" NA18632 nsv525149 6 115954226 115965140 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701219 S 2026 0 1 "" esv33785 6 115991124 115993276 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99321 S 51 1 0 "" 22275 esv33164 6 116008386 116009088 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98876,essv100103 M 51 0 2 "" 21606,22086 nsv7963 6 116061451 116062635 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14600 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18853 nsv510047 6 116235895 116241895 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621290,nssv622125 M 4 0 2 "" NA10860,NA15510 nsv523972 6 116385880 117237397 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699825 S 2026 1 0 "" nsv524705 6 116811390 116815515 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700688 S 2026 0 1 "" nsv348791 6 116857507 116857825 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367369 M 24 "" nsv830783 6 116873562 117072925 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445603 S 95 1 0 "" nsv5448 6 117058908 117093378 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2731 S 9 1 0 "" NA18555 nsv830784 6 117273644 117412065 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445604 S 95 1 0 "" nsv509150 6 117499592 117514907 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620860 S 4 1 0 "" NA15510 dgv2004e1 6 117537917 117733968 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv647,essv14095,essv9540,essv11297,essv9801 M 271 0 0 "" NA18861,NA18863 nsv830785 6 117555636 117733968 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445605,nssv1445607 M 95 2 0 "" nsv519937 6 117624563 117635344 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697136 S 2026 0 1 "" nsv510048 6 117732577 117738577 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618244 S 4 0 1 "" CHM nsv526934 6 117824996 117826221 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703302 S 2026 0 1 "" nsv521325 6 117878836 117882878 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697931 S 2026 0 1 "" nsv507356 6 117910295 117916295 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622986,nssv621857,nssv617718 M 4 3 0 "" CHM,NA10860,NA18994 nsv507357 6 118011632 118017632 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617719,nssv622987,nssv620354,nssv621858 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv521659 6 118057420 118062652 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698276 S 2026 0 1 "" nsv5449 6 118061339 118106444 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8286 S 9 0 1 "" NA12156 nsv830786 6 118133648 118308353 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445608 S 95 1 0 "" nsv5450 6 118175988 118195973 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2612 S 9 0 1 "" NA18555 nsv5451 6 118261362 118293636 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6085 S 9 1 0 "" NA12156 nsv507358 6 118316021 118322021 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621859 S 4 1 0 "" NA10860 nsv522455 6 118335220 118347378 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705818 S 2026 0 1 "" nsv5452 6 118378327 118411515 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8287 S 9 1 0 "" NA12156 nsv830787 6 118738595 118911799 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445609,nssv1445610 M 95 0 2 "" nsv525179 6 118832936 118982785 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701256 S 2026 1 0 "" nsv464029 6 118874843 118967956 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540028 S 1557 1 0 "" 1780862529_A nsv525925 6 118920013 118925905 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702129 S 2026 0 1 "" nsv830788 6 119120714 119250355 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445611 S 95 1 0 "" nsv464030 6 119150591 119187072 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540029 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00929 nsv5453 6 119220511 119253593 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4939 S 9 1 0 "" NA19129 nsv509151 6 119251685 119264745 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620861 S 4 1 0 "" NA15510 nsv510910 6 119251685 119264745 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624311,nssv622377,nssv618654 M 4 0 0 "" CHM,NA10860,NA18994 nsv437523 6 119293670 119301979 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467404 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19094 nsv528632 6 119422584 119439559 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705262 S 2026 0 1 "" nsv349001 6 119459203 119459530 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367579 M 24 "" nsv522725 6 119591167 119606742 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698356 S 2026 0 1 "" nsv5455 6 119836675 119881335 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8289 S 9 0 1 "" NA12156 nsv818452 6 119937015 119957031 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417872 S 112 1 0 "" NA18852 nsv464032 6 120408884 120454842 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540030 S 1557 0 1 "" NINDS_125 nsv525211 6 120417427 120431183 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701293 S 2026 0 1 "" nsv5456 6 120417677 120444729 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv11134 S 9 1 0 "" NA15510 nsv527695 6 120431183 120435855 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704173 S 2026 0 1 "" nsv520330 6 120473826 120526299 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697352 S 2026 0 1 "" nsv7964 6 120669295 120672107 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15179,nssv14696,nssv17580,nssv14707,nssv16821,nssv15208,nssv14974,nssv15788,nssv17444,nssv14522,nssv15003,nssv14272,nssv13930,nssv14665,nssv14630,nssv14715,nssv15751,nssv13609,nssv14465,nssv16723,nssv15849,nssv16827,nssv15366 M 31 23 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10847,NA10863,NA11830,NA12155,NA12740,NA12802,NA18504,NA18517,NA18537,NA18572,NA18853,NA18860,NA18942,NA18980,NA19007,NA19132,NA19144,NA19173,NA19221,NA19240 nsv821651 6 120676709 120872662 CNV Loss Sebat_et_al_2004 15273396 ROMA Custom Nimblegen photoprint 85000 probe ROMA oligo array nssv1421194 S 31 0 1 "" esv33237 6 120790463 120793922 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100971,essv95534,essv93078,essv95341,essv99097,essv92918,essv92772,essv93712,essv96732,essv97232,essv93475,essv99695,essv92622,essv99220,essv100313,essv98370 M 51 0 16 "" 21693,21847,21863,21872,21938,21939,21944,21972,22011,22075,22128,22217,22233,22275,22300,22352 nsv348862 6 120806516 120806516 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367440 M 24 "" nsv5457 6 120815314 120821105 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2732 S 9 1 0 "" NA18555 nsv350083 6 120936159 120936159 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368661 M 24 "" nsv7965 6 120999219 121007972 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16851 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18860 dgv2005e1 6 121008976 121071648 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv5665,esv1099 M 271 0 0 "" NA18605 nsv349403 6 121024077 121027992 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367981 M 24 "" nsv464036 6 121025447 121050378 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540031 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01347 nsv528002 6 121031939 121043332 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704527 S 2026 0 1 "" nsv7966 6 121032497 121044676 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15196 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18552 nsv442006 6 121563601 121565754 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv517605 6 121565435 121565930 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv679204,nssv679740,nssv691034,nssv663086,nssv680057,nssv675182,nssv672332,nssv692132,nssv669980,nssv693583,nssv668024,nssv684411,nssv666165,nssv692880,nssv690352,nssv652491,nssv675911,nssv656501,nssv672991,nssv683308,nssv654507,nssv689082,nssv678852,nssv679864,nssv681172,nssv662217,nssv691879,nssv682423,nssv677001,nssv688232 M 2026 0 30 "" nsv524172 6 121565435 121568597 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700052 S 2026 0 1 "" nsv527946 6 121586575 121593719 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704454 S 2026 0 1 "" nsv830789 6 121623149 121774019 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445612 S 95 0 1 "" nsv519021 6 121713643 121718864 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696492 S 2026 0 1 "" nsv518937 6 121723629 121725453 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696403 S 2026 0 1 "" nsv515656 6 121790241 121791852 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv664264,nssv662027,nssv659673,nssv656174,nssv667326,nssv655483 M 2026 0 6 "" nsv5458 6 121829220 121864753 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4607 S 9 0 1 "" NA19129 nsv517347 6 121838651 121840667 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv671948,nssv689404,nssv653044,nssv680634,nssv656415,nssv656812,nssv688531,nssv655694,nssv689770,nssv678083,nssv657778,nssv672060,nssv678020,nssv683903,nssv671724,nssv688939,nssv669759,nssv681202,nssv655796,nssv675242,nssv684580,nssv651793,nssv671406,nssv687599,nssv685056 M 2026 0 25 "" nsv517735 6 121892269 121892602 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv680635,nssv689771,nssv653045,nssv683061 M 2026 0 4 "" dgv394n21 6 121899308 121917347 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv528731,nsv526935 M 2026 0 2 "" nsv518938 6 121994106 122050383 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696404 S 2026 1 0 "" nsv508428 6 122014031 122095128 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622557 S 4 0 1 "" NA18994 nsv348859 6 122203370 122203370 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367437 M 24 "" nsv5459 6 122349035 122397004 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6086 S 9 0 1 "" NA12156 nsv830790 6 122512217 122673099 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445613 S 95 0 1 "" nsv349282 6 122600948 122600948 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367860 M 24 "" nsv464038 6 122702668 122733724 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540032 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01078 dgv2006e1 6 122765634 122925836 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv468,essv20931 M 271 0 0 "" NA12801 nsv830791 6 122966661 123197854 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445614 S 95 1 0 "" nsv349057 6 123097637 123099152 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367635 M 24 "" nsv522150 6 123118271 123133784 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694924 S 2026 1 0 "" nsv464040 6 123238039 123274804 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540033 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01319 nsv5460 6 123514079 123548001 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv578 S 9 1 0 "" NA19240 nsv524559 6 123552715 124371375 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700513 S 2026 1 0 "" nsv349376 6 123556758 123557072 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367954 M 24 "" nsv526420 6 123669986 123938996 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702721 S 2026 1 0 "" nsv830792 6 123757675 123909907 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445615 S 95 1 0 "" nsv349422 6 123805116 123805420 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368000 M 24 "" nsv520198 6 123809909 123834810 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697275 S 2026 0 1 "" nsv5461 6 123870374 123898312 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3467,nssv8290 M 9 2 0 "" NA12156,NA12878 nsv509152 6 123883854 123902001 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619457 S 4 1 0 "" NA10860 nsv520332 6 123954465 123955693 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697353 S 2026 0 1 "" nsv349674 6 123966006 123966006 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368252 M 24 "" nsv5462 6 124223650 124225982 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8291 S 9 1 0 "" NA12156 nsv349664 6 124359160 124359233 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368242 M 24 "" nsv818453 6 124383894 124385638 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417873,nssv1417586 M 112 2 0 "" NA18852,NA18972 esv2752089 6 124384362 124525535 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6989607,essv6982316 M 771 0 1 "" BEC_415 nsv525167 6 124424451 124429862 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701241 S 2026 0 1 "" nsv464042 6 124453652 124510591 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540034 S 1557 1 0 "" 1780862040_A nsv517303 6 124453652 124510591 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv683421,nssv658101,nssv683526,nssv692903,nssv686456,nssv678888,nssv660802,nssv678716,nssv682159,nssv671674,nssv654266,nssv676344,nssv660201,nssv677395,nssv689204,nssv686431,nssv656079,nssv679974,nssv672408,nssv687758,nssv686820,nssv670294,nssv679306,nssv667096,nssv662236,nssv669569,nssv673259,nssv681203,nssv654616,nssv691072,nssv685883,nssv677836,nssv692619,nssv681173,nssv691289,nssv677200,nssv666110,nssv656527,nssv686783,nssv658602,nssv655045,nssv684873,nssv659311 M 2026 43 0 "" nsv830794 6 124468655 124632063 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445616 S 95 1 0 "" dgv783n27 6 124470479 124513036 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv464049,nsv464051,nsv464048,nsv464045,nsv464053,nsv464043,nsv464047,nsv464052,nsv464046,nsv464044 M 1557 10 0 "" 1782681296_A,1798860166_A,1798860279_A,HGDP00092,HGDP00527,HGDP00697,HGDP01363,NINDS_104,NINDS_238,NINDS_34 nsv442007 6 124477644 124512064 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv818454 6 124479205 124510591 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417037,nssv1417036,nssv1415766 M 112 3 0 "" NA06994,NA07029,NA12875 nsv464054 6 124479205 124526687 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540046 S 1557 1 0 "" NINDS_204 nsv464055 6 124631416 124661545 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540047 S 1557 0 1 "" NINDS_145 nsv5463 6 124644252 124689012 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8292 S 9 0 1 "" NA12156 nsv464057 6 124683460 124718922 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540048 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00066 nsv348535 6 124698236 124700420 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367113 M 24 "" nsv348725 6 124950244 124950294 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367303 M 24 "" nsv5464 6 124958437 125003251 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8293 S 9 0 1 "" NA12156 nsv830795 6 125419531 125622962 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445618 S 95 0 1 "" nsv5466 6 125439510 125484101 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8294 S 9 0 1 "" NA12156 nsv5467 6 126187144 126200796 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2613 S 9 0 1 "" NA18555 nsv830796 6 126207326 126377861 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445619 S 95 0 1 "" nsv441685 6 126225385 126228469 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv527938 6 126394279 126415458 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704446 S 2026 0 1 "" nsv5468 6 126696031 126730143 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2733 S 9 1 0 "" NA18555 nsv830797 6 126965568 127142649 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445620 S 95 1 0 "" nsv528549 6 127574074 127585608 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705161 S 2026 0 1 "" nsv7385 6 127600818 127638965 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10516 S 9 0 0 "" NA18956 nsv830798 6 127882719 128029543 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445621 S 95 0 1 "" nsv5469 6 127952249 127987285 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv579 S 9 1 0 "" NA19240 nsv830799 6 128074793 128236204 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445623,nssv1445622 M 95 0 2 "" nsv518548 6 128088406 128104520 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695991 S 2026 0 1 "" nsv525919 6 128204085 128204621 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702123 S 2026 0 1 "" nsv7967 6 128346664 128357116 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15226 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18552 nsv5470 6 128355189 128389518 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3468 S 9 1 0 "" NA12878 nsv510906 6 128358853 128371718 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622378 S 4 0 0 "" NA10860 nsv516794 6 128445438 128472199 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv670919,nssv693267 M 2026 0 2 "" nsv5471 6 128461130 128472072 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8295 S 9 0 1 "" NA12156 nsv528869 6 128463455 128538250 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705549 S 2026 0 1 "" nsv830800 6 128752324 128920128 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445624 S 95 1 0 "" nsv516115 6 128869961 128870789 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv679961,nssv661181,nssv666379,nssv676833,nssv666305 M 2026 0 5 "" dgv2007e1 6 128883885 128886524 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv24312,esv298 M 271 0 0 "" NA10856 nsv350152 6 128886899 128886899 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368730 M 24 "" nsv830801 6 128920129 129106360 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445625 S 95 0 1 "" nsv510911 6 128962961 128975643 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621593 S 4 0 0 "" NA15510 nsv349364 6 129031510 129031843 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367942 M 24 "" nsv5472 6 129084328 129119192 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv580 S 9 1 0 "" NA19240 nsv510049 6 129144848 129150848 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622126 S 4 0 1 "" NA10860 nsv830802 6 129215769 129424531 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445626 S 95 1 0 "" dgv2008e1 6 129315361 129484648 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv857,essv4865,esv274,essv5322 M 271 0 0 "" NA18540,NA18563,NA19000 nsv5473 6 129347306 129389429 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4942,nssv6087 M 9 0 2 "" NA12156,NA19129 nsv508429 6 129357973 129373362 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618797 S 4 0 1 "" NA10860 nsv507359 6 129363227 129369227 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617720,nssv622988,nssv620355 M 4 3 0 "" CHM,NA15510,NA18994 nsv830803 6 129470348 129631919 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445627 S 95 1 0 "" esv33261 6 129542724 129543172 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97273,essv100009 M 51 0 2 "" 22075,22086 nsv517933 6 129575017 129575312 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695345 S 2026 0 1 "" nsv348464 6 129649858 129649928 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367042 M 24 "" nsv348924 6 129649885 129649955 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367502 M 24 "" nsv348787 6 129660990 129660990 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367365 M 24 "" nsv350076 6 129722478 129722478 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368654 M 24 "" nsv350022 6 129722481 129722481 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368600 M 24 "" nsv528240 6 129746282 129748811 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704802 S 2026 0 1 "" esv33666 6 129767842 129767948 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98885,essv100348 M 51 2 0 "" 21606,22300 esv33659 6 129768810 129769235 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv94470,essv97109 M 51 2 0 "" 21808,22075 esv32679 6 129772822 129773321 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101498,essv98846,essv101103,essv100778,essv100997,essv98315,essv94758,essv94317,essv93135,essv95914,essv99089,essv93790,essv97284,essv99807,essv93439,essv93186,essv100233,essv100339,essv99515,essv96382 M 51 20 0 "" 21603,21606,21618,21656,21693,21772,21791,21808,21863,21911,21938,21972,22075,22086,22128,22170,22286,22300,22335,22371 nsv348741 6 129778764 129779077 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367319 M 24 "" esv33104 6 129779114 129781030 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100628 S 51 1 0 "" 21656 esv33882 6 129782284 129828284 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99987 S 51 0 1 "" 22086 nsv5474 6 129818520 129851117 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2614 S 9 1 0 "" NA18555 nsv524782 6 129938194 130087370 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700773 S 2026 0 1 "" nsv830805 6 130057758 130196504 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445632,nssv1445631,nssv1445630 M 95 3 0 "" nsv522152 6 130066322 130070083 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694925 S 2026 1 0 "" nsv510050 6 130648277 130654277 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618245,nssv621291 M 4 0 2 "" CHM,NA15510 nsv507360 6 130789752 130795752 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622989,nssv620356,nssv617721 M 4 3 0 "" CHM,NA15510,NA18994 nsv507361 6 130918326 130924326 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621860 S 4 1 0 "" NA10860 nsv5475 6 130921862 130966543 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8297 S 9 0 1 "" NA12156 nsv830806 6 130980023 131148830 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445633 S 95 1 0 "" nsv522019 6 131059646 131061320 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694787 S 2026 0 1 "" nsv5477 6 131350848 131384290 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8298 S 9 1 0 "" NA12156 nsv830807 6 131432645 131623624 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445634 S 95 0 1 "" nsv507362 6 131520725 131526725 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621861,nssv617722,nssv622990,nssv620357 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv830808 6 131562808 131777013 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445636,nssv1445635,nssv1445637 M 95 0 3 "" nsv5478 6 131677031 131710837 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3469 S 9 1 0 "" NA12878 nsv518565 6 131778995 131779347 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694249 S 2026 0 1 "" nsv7968 6 131958865 132362792 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14660,nssv15004,nssv13571,nssv17610 M 31 0 4 Samples from several populations that are part of the HapMap project. "" NA10839,NA12872,NA18853,NA19221 dgv88n68 6 131995621 132180089 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH nsv830809,nsv830810 M 95 0 2 "" nsv471444 6 132063302 132064234 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548295,nssv548294,nssv548293 M 3 "" nsv5479 6 132143590 132178286 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3470 S 9 0 1 "" NA12878 nsv507363 6 132292974 132298974 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617723,nssv622991,nssv620358,nssv621862 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv830811 6 132664853 132829232 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445641 S 95 1 0 "" nsv818455 6 132736444 132743942 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415652 S 112 0 1 "" NA10835 nsv5480 6 132747307 132755733 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3471 S 9 0 1 "" NA12878 nsv442008 6 132751050 132754736 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv517934 6 133104609 133114343 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695346 S 2026 0 1 "" nsv5481 6 133353358 133416241 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10517,nssv2615,nssv9698,nssv581,nssv4943,nssv6089 M 9 0 6 "" NA12156,NA18507,NA18555,NA18956,NA19129,NA19240 nsv508430 6 133378021 133389944 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618798,nssv619983 M 4 0 2 "" NA10860,NA15510 nsv510907 6 133378021 133396764 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618692 S 4 0 0 "" CHM nsv519475 6 133392629 133516366 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv681290,nssv656310 M 2026 2 0 "" dgv2009e1 6 133486412 133669057 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv224,essv19921 M 271 0 0 "" NA12813 nsv5482 6 133526041 133556257 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv582 S 9 1 0 "" NA19240 nsv519757 6 133534200 133539013 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv673734,nssv658196 M 2026 0 2 "" nsv524926 6 133534200 133552384 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700939 S 2026 0 1 "" nsv464058 6 133534200 133569628 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540049 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00966 nsv7970 6 133557110 133563154 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14690 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18853 nsv523300 6 133577465 133581888 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699040 S 2026 0 1 "" nsv5483 6 133595996 133641031 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8299 S 9 0 1 "" NA12156 nsv521665 6 133668941 133669930 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698284 S 2026 0 1 "" nsv5484 6 133714121 133749004 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv583 S 9 1 0 "" NA19240 nsv5485 6 133755812 133789325 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4944 S 9 1 0 "" NA19129 nsv525971 6 133768339 133795518 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702186 S 2026 0 1 "" nsv818457 6 133941232 133947437 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417874 S 112 1 0 "" NA18852 nsv437014 6 133961469 133965775 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv466895 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA06991 nsv522975 6 133998544 133998632 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698645 S 2026 0 1 "" nsv830812 6 134035590 134207100 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445642 S 95 1 0 "" nsv5486 6 134080762 134116063 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv584 S 9 1 0 "" NA19240 nsv507364 6 134315777 134321777 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617724 S 4 1 0 "" CHM nsv515846 6 134507593 134508166 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv664995,nssv658234,nssv693705,nssv680490,nssv666567,nssv683868,nssv659969,nssv672511 M 2026 0 8 "" nsv348798 6 134517197 134526925 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367376 M 24 "" nsv441702 6 134592448 134598896 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv395n21 6 134596031 134599082 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv521411,nsv523127 M 2026 2 0 "" dgv2010e1 6 134665824 134752836 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv119,essv242 M 271 0 0 "" NA18948 nsv7971 6 134672845 134675323 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14695 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18980 nsv464059 6 134728553 134785905 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540050 S 1557 1 0 "" 1780862310_A nsv349515 6 134812251 134812251 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368093 M 24 "" nsv508431 6 134850742 134919812 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622558 S 4 0 1 "" NA18994 nsv830813 6 135092504 135274812 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445643 S 95 0 1 "" nsv520431 6 135145917 135146623 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694382 S 2026 0 1 "" nsv5488 6 135186589 135230707 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3472 S 9 0 1 "" NA12878 nsv5489 6 135266128 135311575 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6090 S 9 0 1 "" NA12156 nsv464063 6 135277227 135524259 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540052 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00181 nsv5490 6 135527395 135561319 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8300 S 9 1 0 "" NA12156 nsv521009 6 135757068 135762978 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv679741,nssv687303 M 2026 0 2 "" nsv519167 6 135796164 135814918 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694312 S 2026 0 1 "" nsv521884 6 135796164 135867394 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694656 S 2026 0 1 "" nsv830814 6 136022361 136197846 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445644 S 95 0 1 "" nsv522833 6 136024808 136043720 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698483 S 2026 0 1 "" nsv518511 6 136031343 136079920 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695951 S 2026 0 1 "" nsv830816 6 136147027 136341490 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445646,nssv1445645 M 95 2 0 "" dgv2011e1 6 136399747 136408668 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1680,esv960 M 271 0 0 "" NA18992 nsv818458 6 136399886 136408090 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417648 S 112 0 1 "" NA18992 nsv526684 6 136541095 136580101 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703016 S 2026 0 1 "" nsv464064 6 136838904 137039312 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540053 S 1557 0 1 "" 1780854123_A dgv226n6 6 137355387 137355880 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv348517,nsv348800 M 24 "" nsv349973 6 137390939 137397516 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368551 M 24 "" nsv442009 6 137430261 137460049 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv2012e1 6 137501221 137615031 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv68,esv187 M 271 0 0 "" NA18991 esv32557 6 137549175 137604042 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99460 S 51 0 1 "" 22335 nsv520297 6 137792921 137793059 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv688246,nssv662515 M 2026 0 2 "" nsv5491 6 137835885 137867851 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2616 S 9 1 0 "" NA18555 dgv2013e1 6 137914018 137962674 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv4861,esv486 M 271 0 0 "" NA18540 nsv830817 6 137922279 138108785 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445647 S 95 1 0 "" nsv525493 6 137943136 137946040 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701624 S 2026 0 1 "" nsv525702 6 137943136 137948441 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701862 S 2026 0 1 "" nsv516698 6 138000928 138014761 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv670212,nssv681047 M 2026 0 2 "" nsv510051 6 138031246 138037246 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621292 S 4 0 1 "" NA15510 nsv818459 6 138038815 138053358 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418283 S 112 1 0 "" NA19093 nsv5492 6 138085396 138117964 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10518 S 9 1 0 "" NA18956 nsv830818 6 138153528 138313123 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445649,nssv1445648 M 95 2 0 "" nsv830819 6 138204399 138376753 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445652,nssv1445650 M 95 0 2 "" nsv5493 6 138212257 138246010 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2734 S 9 1 0 "" NA18555 nsv523826 6 138237759 138239024 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699657 S 2026 0 1 "" nsv508432 6 138338801 138451264 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618799 S 4 0 1 "" NA10860 nsv5494 6 138359388 138404820 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6091 S 9 0 1 "" NA12156 nsv5495 6 138362875 138366348 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2735 S 9 1 0 "" NA18555 nsv519133 6 138512325 138515946 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694070 S 2026 0 1 "" nsv5496 6 138593365 138638288 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8301 S 9 0 1 "" NA12156 nsv5497 6 138595458 138628437 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv586 S 9 1 0 "" NA19240 esv2752090 6 138757930 139068470 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6986293,essv6982874,essv6982873,essv6982872,essv6986294 M 771 1 0 "" BEC_606 nsv5499 6 138835786 138880763 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8302 S 9 0 1 "" NA12156 nsv5500 6 139150613 139183583 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2617 S 9 1 0 "" NA18555 nsv510052 6 139387843 139393843 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622127,nssv618246 M 4 0 2 "" CHM,NA10860 nsv507365 6 139470148 139476148 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622992,nssv620359 M 4 2 0 "" NA15510,NA18994 esv33136 6 139483194 139488013 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100095 S 51 0 1 "" 22086 esv32697 6 139498246 139499174 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv94042 S 51 1 0 "" 21802 nsv524431 6 139564988 139579904 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700358 S 2026 0 1 "" nsv508433 6 139638071 139652684 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618800 S 4 0 1 "" NA10860 nsv5501 6 139643148 139670156 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv587 S 9 0 1 "" NA19240 esv33633 6 139644130 139648760 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101588,essv100789,essv96820,essv95193,essv98232,essv94082,essv101400,essv95717,essv95752,essv97408,essv95858,essv96228,essv93559,essv95024,essv97695,essv100136,essv100625,essv96285 M 51 0 17 "" 21603,21656,21659,21721,21772,21802,21805,21841,21879,21911,22007,22128,22231,22278,22286,22298,22371 nsv519810 6 139784481 139785500 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697063 S 2026 0 1 "" nsv518835 6 139811760 139842585 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696288 S 2026 0 1 "" nsv516840 6 140002526 140095397 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv681808,nssv654381,nssv654872 M 2026 3 0 "" nsv464065 6 140069529 140127566 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540054 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01043 nsv830820 6 140100972 140296985 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445653 S 95 0 1 "" nsv5502 6 140280660 140313682 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3473 S 9 1 0 "" NA12878 nsv527772 6 140373789 140379136 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704261 S 2026 0 1 "" nsv442010 6 140429449 140432237 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv5503 6 140553053 140597876 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8304 S 9 0 1 "" NA12156 nsv5504 6 140641733 140674699 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3475 S 9 1 0 "" NA12878 nsv510053 6 140740208 140746208 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618247 S 4 0 1 "" CHM nsv524995 6 140775548 140843190 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701026 S 2026 0 1 "" nsv519374 6 140822296 140891395 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696819 S 2026 0 1 "" nsv521860 6 140891395 140953082 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694634 S 2026 0 1 "" nsv521710 6 140917720 141009985 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698336 S 2026 0 1 "" nsv830821 6 140932648 141101913 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445654 S 95 0 1 "" nsv349777 6 140994597 140994884 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368355 M 24 "" esv33208 6 140999039 141099048 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv95990 S 51 0 1 "" 22127 nsv510054 6 141089313 141095313 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621293 S 4 0 1 "" NA15510 nsv527467 6 141100320 141102099 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703910 S 2026 0 1 "" nsv523842 6 141102099 141103435 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699675 S 2026 0 1 "" nsv518624 6 141174696 141183650 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696072 S 2026 0 1 "" nsv349362 6 141325666 141328231 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367940 M 24 "" nsv830822 6 141429496 141584691 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445655 S 95 1 0 "" nsv5505 6 141519418 141552823 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8305 S 9 1 0 "" NA12156 nsv507366 6 141742349 141748349 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617725,nssv622993,nssv620360,nssv621863 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv5506 6 142016011 142050192 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2736 S 9 1 0 "" NA18555 nsv5507 6 142072518 142096379 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9895 S 9 0 1 "" NA18507 nsv523281 6 142083552 142092249 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699018 S 2026 0 1 "" nsv515599 6 142088990 142092249 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv685385,nssv685057,nssv674420,nssv669760,nssv677928,nssv678853,nssv673801,nssv664046 M 2026 0 8 "" dgv396n21 6 142115717 142171702 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv523425,nsv525384 M 2026 0 2 "" nsv830823 6 142153113 142347110 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445656 S 95 0 1 "" nsv464066 6 142171702 142278271 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540055 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01251 nsv7386 6 142208297 142295063 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4946,nssv4945 M 9 0 0 "" NA19129 nsv5508 6 142223441 142254094 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10519 S 9 1 0 "" NA18956 nsv464067 6 142255786 142324891 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540056 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00868 nsv464068 6 142304894 142357870 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540057 S 1557 0 1 "" 1780854465_A nsv522300 6 142342920 142358365 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695081 S 2026 0 1 "" nsv464069 6 142364149 142449434 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540058 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01380 nsv830824 6 142402800 142586622 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445657 S 95 1 0 "" nsv524881 6 142418144 142431075 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700887 S 2026 0 1 "" nsv5510 6 142479039 142512815 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3476,nssv8306 M 9 2 0 "" NA12156,NA12878 nsv509154 6 142490797 142505979 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618057 S 4 1 0 "" CHM nsv5511 6 142591725 142636653 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8307 S 9 0 1 "" NA12156 nsv830825 6 142626935 142794268 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445659,nssv1445658 M 95 2 0 "" nsv830827 6 142882427 143056698 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445660 S 95 1 0 "" nsv520479 6 142910792 142949839 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697444 S 2026 0 1 "" nsv830828 6 143011827 143158210 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445664,nssv1445661,nssv1445663 M 95 3 0 "" nsv830829 6 143100101 143259770 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445665 S 95 0 1 "" nsv520992 6 143160408 143162052 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv690167,nssv680360,nssv679446,nssv686609 M 2026 0 4 "" dgv2014e1 6 143861702 143866797 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv904,essv14012 M 271 0 0 "" NA19222 nsv442011 6 143911563 143914293 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv7972 6 143946997 143953480 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16881,nssv14507,nssv14302 M 31 3 0 Samples from several populations that are part of the HapMap project. "" NA18563,NA18860,NA18942 dgv2015e1 6 143958314 144121669 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv819,esv241 M 271 0 0 "" NA18973 nsv5512 6 143965930 143997606 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2618 S 9 1 0 "" NA18555 nsv517253 6 143995365 144016850 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704753,nssv654124,nssv703178,nssv672145 M 2026 1 3 "" nsv7973 6 143997938 144001717 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14495,nssv14537,nssv14332 M 31 3 0 Samples from several populations that are part of the HapMap project. "" NA10847,NA18563,NA18942 esv33992 6 143999470 144008329 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97334,essv100082,essv100326 M 51 0 3 "" 21879,22086,22300 esv33301 6 144011485 144011529 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100831 S 51 1 0 "" 21656 nsv5513 6 144109699 144143721 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8308 S 9 0 1 "" NA12156 nsv7974 6 144112486 144114786 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13960,nssv14805 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA12802,NA18537 nsv510055 6 144177982 144183982 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621294 S 4 0 1 "" NA15510 nsv5514 6 144178569 144214005 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3477 S 9 1 0 "" NA12878 nsv830830 6 144219635 144422563 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445666 S 95 1 0 "" nsv5515 6 144228772 144257655 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2737 S 9 1 0 "" NA18555 nsv5516 6 144342014 144387505 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6092 S 9 0 1 "" NA12156 nsv510056 6 144344263 144350263 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624016,nssv622128,nssv618248 M 4 0 3 "" CHM,NA10860,NA18994 nsv5517 6 144393846 144417316 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9434 S 9 1 0 "" NA18517 nsv522588 6 144476564 144477763 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705975 S 2026 0 1 "" nsv507367 6 144523972 144529972 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622994 S 4 1 0 "" NA18994 nsv830831 6 144543064 144691202 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445667 S 95 1 0 "" nsv830832 6 144614071 144800716 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445668 S 95 1 0 "" esv2422260 6 144616284 144773323 CNV Deletion Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161565 S 181 0 1 "" ND05165 nsv516523 6 144761458 144770025 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv663087,nssv668858,nssv661698 M 2026 0 3 "" nsv527525 6 144761458 144779363 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703980 S 2026 0 1 "" nsv510057 6 144876808 144882808 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624017,nssv621295 M 4 0 2 "" NA15510,NA18994 nsv830833 6 145043003 145242836 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445670,nssv1445669 M 95 0 2 "" nsv5518 6 145091086 145114144 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4947 S 9 1 0 "" NA19129 nsv464070 6 145226197 145256645 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540059 S 1557 0 1 "" 1798860371_A nsv5519 6 145389224 145401944 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9699 S 9 1 0 "" NA18507 nsv830834 6 145433766 145597987 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445671 S 95 0 1 "" nsv524076 6 145642311 145651643 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699944 S 2026 0 1 "" nsv5522 6 145764952 145796608 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2619 S 9 1 0 "" NA18555 nsv520619 6 145842608 145849600 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv678826,nssv673285,nssv675971,nssv695804 M 2026 0 4 "" nsv830835 6 146186841 146329166 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445672,nssv1445674 M 95 0 2 "" nsv437525 6 146253978 146272147 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467406 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19194 nsv830836 6 146465098 146640676 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445675 S 95 1 0 "" nsv527571 6 146662358 146675511 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704032 S 2026 0 1 "" esv32685 6 146701212 146701492 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100766,essv99828 M 51 0 2 "" 21656,22086 nsv5523 6 146827807 146860175 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6093 S 9 1 0 "" NA12156 nsv830838 6 147132438 147316362 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445676 S 95 1 0 "" nsv349025 6 147150448 147150498 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367603 M 24 "" nsv442012 6 147252374 147261510 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv522096 6 147466573 147485173 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694131 S 2026 0 1 "" nsv5524 6 147470129 147496064 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9896 S 9 0 1 "" NA18507 nsv442013 6 147480203 147486248 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv830839 6 147626607 147798957 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445677 S 95 1 0 "" nsv522406 6 147632715 147677106 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694165 S 2026 0 1 "" nsv525703 6 147801227 147808928 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701863 S 2026 0 1 "" nsv7975 6 147975390 147980265 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16783 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18504 nsv437977 6 147977712 147984614 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv468881,nssv468882 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA10838,NA12004 nsv5525 6 148046453 148088923 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9897 S 9 0 1 "" NA18507 nsv830840 6 148047413 148221588 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445678 S 95 1 0 "" nsv520615 6 148169834 148732457 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv682936,nssv673245 M 2026 2 0 "" nsv5526 6 148185684 148244950 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10520,nssv6094 M 9 2 0 "" NA12156,NA18956 nsv349154 6 148272390 148272390 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367732 M 24 "" nsv437978 6 148308446 148313524 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv468884,nssv468883 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA19092,NA19094 nsv5527 6 148335679 148368119 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6095 S 9 1 0 "" NA12156 nsv350122 6 148485671 148488224 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368700 M 24 "" nsv830841 6 148643197 148790500 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445681,nssv1445680,nssv1445679 M 95 0 3 "" nsv464071 6 148651093 148692557 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540060 S 1557 1 0 "" 1780862573_A nsv5528 6 148856348 148862531 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8309 S 9 0 1 "" NA12156 nsv5529 6 148897516 148928607 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8311 S 9 0 1 "" NA12156 nsv348624 6 148931269 148931269 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367202 M 24 "" nsv5530 6 148995744 149040617 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8312 S 9 0 1 "" NA12156 nsv464074 6 149252783 149283788 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540062 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01272 nsv464075 6 149262987 149283788 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540063 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01278 nsv830842 6 149314014 149469033 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445682 S 95 1 0 "" nsv528588 6 149445162 149451553 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705213 S 2026 0 1 "" nsv520134 6 149451553 149451825 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv661082,nssv685310 M 2026 0 2 "" nsv5531 6 149600820 149616287 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10521 S 9 1 0 "" NA18956 nsv522875 6 149685402 149804230 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698530 S 2026 0 1 "" nsv517889 6 149695485 149699811 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695297 S 2026 0 1 "" nsv517606 6 149786325 149797388 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv657428,nssv657999,nssv671555,nssv691855,nssv658235,nssv670052,nssv675972,nssv662331,nssv669981,nssv668859,nssv652492,nssv674035,nssv665597,nssv680058 M 2026 0 14 "" nsv5533 6 149789740 149834765 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8313 S 9 0 1 "" NA12156 nsv464076 6 149797388 149840528 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540064 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00907 nsv7976 6 149930666 149932803 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15033 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA07048 nsv5534 6 150012350 150096581 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4949,nssv588,nssv10522,nssv9898,nssv11136,nssv3478,nssv6096,nssv9435,nssv2620 M 9 0 9 "" NA12156,NA12878,NA15510,NA18507,NA18517,NA18555,NA18956,NA19129,NA19240 nsv510912 6 150022479 150092279 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618693,nssv622379,nssv621594,nssv624312 M 4 0 0 "" CHM,NA10860,NA15510,NA18994 nsv289 6 150023750 150094165 CNV Loss Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv289 S 1 0 1 "" NA15510 nsv7977 6 150064585 150066722 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15063 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA07048 nsv349268 6 150175759 150176367 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367846 M 24 "" nsv517022 6 150237115 150518386 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694489,nssv653630,nssv705168,nssv658419,nssv704657,nssv702769,nssv673246,nssv696319,nssv698324,nssv661372,nssv700224,nssv682937 M 2026 2 10 "" nsv464077 6 150430179 150450126 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540065 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00950 nsv5535 6 150431811 150453773 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8314 S 9 0 1 "" NA12156 nsv5536 6 150563697 150598592 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv589 S 9 1 0 "" NA19240 nsv5537 6 150604450 150619709 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3479 S 9 1 0 "" NA12878 nsv830843 6 150609525 150783287 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445688,nssv1445685,nssv1445689,nssv1445683,nssv1445687,nssv1445686 M 95 1 5 "" nsv519529 6 150704126 150710864 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696903 S 2026 0 1 "" nsv524641 6 150717686 150736144 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700607 S 2026 0 1 "" nsv5538 6 150732484 150744865 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv590 S 9 0 1 "" NA19240 nsv464078 6 150812553 150821992 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540066 S 1557 0 1 "" 1787431166_A nsv523189 6 150833550 150835478 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698905 S 2026 1 0 "" nsv464079 6 150928790 150965880 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540067 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00805 nsv522578 6 150960557 150965880 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705965 S 2026 1 0 "" nsv437526 6 151015229 151018613 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467407 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19142 nsv464080 6 151015229 151033424 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540068 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00534 nsv522403 6 151039638 151042329 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695185 S 2026 0 1 "" nsv5539 6 151120549 151154642 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2738 S 9 1 0 "" NA18555 nsv350123 6 151352953 151361237 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368701 M 24 "" dgv2016e1 6 151380322 151546953 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv5369,esv438 M 271 0 0 "" NA18563 nsv525834 6 151391521 151402388 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702024 S 2026 0 1 "" nsv518529 6 151394065 151407355 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695972 S 2026 0 1 "" nsv5540 6 151399271 151443755 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4608 S 9 0 1 "" NA19129 nsv464081 6 151415778 151428554 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540069 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01380 nsv519886 6 151419147 151420060 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv686651,nssv661334,nssv659312 M 2026 0 3 "" nsv818460 6 151419147 151420060 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416742 S 112 0 1 "" NA19160 nsv7978 6 151447461 151464771 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14567 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18563 nsv523123 6 151492005 151492268 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698824 S 2026 0 1 "" nsv349557 6 151598779 151604501 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368135 M 24 "" nsv521795 6 151674746 151676083 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694566 S 2026 0 1 "" nsv519279 6 151710349 151713725 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv655194,nssv687250,nssv672385 M 2026 0 3 "" nsv349261 6 151741593 151741904 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367839 M 24 "" nsv5541 6 151755396 151788193 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6097 S 9 1 0 "" NA12156 nsv518240 6 151769472 151771312 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695672 S 2026 0 1 "" nsv523861 6 151946208 151952224 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699698 S 2026 0 1 "" nsv516304 6 151959844 151961759 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv667432,nssv682500 M 2026 0 2 "" nsv830844 6 152051898 152274140 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445710,nssv1445707,nssv1445708,nssv1445709,nssv1445711,nssv1445705,nssv1445692,nssv1445691,nssv1445690,nssv1445694,nssv1445693,nssv1445704,nssv1445698,nssv1445699,nssv1445697,nssv1445696,nssv1445703,nssv1445702,nssv1445701,nssv1445700 M 95 20 0 "" nsv348943 6 152063570 152064507 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367521 M 24 "" nsv349546 6 152149640 152153544 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368124 M 24 "" nsv830845 6 152227658 152396749 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445712 S 95 0 1 "" nsv521296 6 152248311 152248691 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697902 S 2026 0 1 "" nsv519010 6 152392741 152401246 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696479 S 2026 0 1 "" nsv507368 6 152394848 152400848 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621864,nssv617726,nssv620361 M 4 3 0 "" CHM,NA10860,NA15510 nsv517009 6 152396442 152401246 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv691880,nssv661083,nssv671067,nssv653605,nssv653217,nssv658461,nssv673802,nssv686848,nssv668063,nssv686535,nssv687271,nssv685311,nssv654972,nssv660390 M 2026 0 14 "" nsv5542 6 152535452 152569477 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv591 S 9 1 0 "" NA19240 nsv518810 6 152608555 152608692 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694276 S 2026 0 1 "" nsv5544 6 152698706 152733672 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3480 S 9 1 0 "" NA12878 nsv349055 6 152704304 152704396 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367633 M 24 "" nsv818461 6 152752951 152758998 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417275 S 112 1 0 "" NA18593 nsv5545 6 152756405 152766908 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2740 S 9 1 0 "" NA18555 nsv830846 6 152855988 153040311 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445713 S 95 0 1 "" nsv508434 6 152880603 152903398 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622559,nssv618801 M 4 0 2 "" NA10860,NA18994 nsv507369 6 152882569 152888569 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617727,nssv620362 M 4 2 0 "" CHM,NA15510 nsv464082 6 152984852 153018631 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540070 S 1557 1 0 "" 1780854326_A nsv5546 6 153113407 153131453 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6099,nssv3481 M 9 0 2 "" NA12156,NA12878 nsv508435 6 153115667 153126028 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619984,nssv618802,nssv622560 M 4 0 3 "" NA10860,NA15510,NA18994 nsv348864 6 153122086 153125903 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367442 M 24 "" dgv2017e1 6 153155406 153326844 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv4401,esv259 M 271 0 0 "" NA18573 esv32832 6 153292590 153306688 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93224 S 51 1 0 "" 22170 nsv349873 6 153335789 153338354 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368451 M 24 "" nsv523707 6 153607125 153608796 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699516 S 2026 0 1 "" nsv525235 6 153607125 153665559 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701325 S 2026 1 0 "" nsv520585 6 153641787 153720432 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697504 S 2026 0 1 "" nsv517890 6 153651991 153661701 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695298 S 2026 0 1 "" nsv527104 6 153867424 153893284 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703484 S 2026 0 1 "" dgv784n27 6 153869660 153902917 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv464085,nsv464083 M 1557 0 2 "" HGDP01237,HGDP01238 nsv520116 6 153914850 153958157 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv660908,nssv686232 M 2026 2 0 "" nsv349008 6 154024574 154024732 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367586 M 24 "" nsv5547 6 154026320 154060070 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2741 S 9 1 0 "" NA18555 nsv519274 6 154203815 154206697 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694321 S 2026 0 1 "" dgv2018e1 6 154212042 154232313 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1081,essv716 M 271 0 0 "" NA18940,NA18990 dgv2019e1 6 154212042 154386563 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv73,essv3465,essv4504,essv524,essv5919,essv24854,esv656,essv7264,essv5088 M 271 0 0 "" NA07000,NA18550,NA18552,NA18577,NA18592,NA18991,NA18992,NA18998 nsv442015 6 154214098 154220354 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv7979 6 154242101 154243941 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17153 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18972 nsv5548 6 154269604 154298892 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8315 S 9 0 1 "" NA12156 nsv5549 6 154354395 154385568 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv11137 S 9 1 0 "" NA15510 nsv523047 6 154370498 154375323 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698730 S 2026 0 1 "" nsv510058 6 154371311 154377311 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618249,nssv624018,nssv621296 M 4 0 3 "" CHM,NA15510,NA18994 nsv516084 6 154440719 154452911 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv692458,nssv692764,nssv666111 M 2026 0 3 "" nsv527049 6 154471266 154475772 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703425 S 2026 0 1 "" nsv520558 6 154475772 154510528 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694388 S 2026 0 1 "" nsv524944 6 154529365 154533977 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700961 S 2026 0 1 "" nsv830847 6 154532000 154668792 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445714 S 95 1 0 "" nsv349212 6 154539029 154539350 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367790 M 24 "" nsv5550 6 154636131 154669003 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv592 S 9 1 0 "" NA19240 esv32616 6 154678376 154691290 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97483 S 51 0 1 "" 21616 nsv523401 6 154706539 154722654 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699152 S 2026 1 0 "" nsv7981 6 154799451 154818846 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15209 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19173 dgv2020e1 6 154802849 154849989 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1359,essv12118 M 271 0 0 "" NA19173 nsv818462 6 154805874 154816021 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416552,nssv1416553 M 112 0 2 "" NA19171,NA19173 nsv523663 6 154896763 154903710 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699464 S 2026 1 0 "" nsv442016 6 155055779 155064045 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" esv32566 6 155210598 155217022 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100792,essv98276,essv95432,essv93015 M 51 0 4 "" 21656,21772,21847,21863 nsv5551 6 155236685 155281473 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8316 S 9 0 1 "" NA12156 nsv464086 6 155323795 155364065 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540074 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01034 nsv349884 6 155364732 155364732 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368462 M 24 "" nsv349745 6 155442514 155442588 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368323 M 24 "" nsv5552 6 155543722 155588476 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8317 S 9 0 1 "" NA12156 nsv525690 6 155627815 155632343 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701849 S 2026 0 1 "" nsv526576 6 155643334 155671513 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702894 S 2026 0 1 "" nsv520490 6 155766442 155789987 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv688940,nssv672458,nssv671816,nssv696842,nssv677311 M 2026 0 5 "" esv33329 6 155824352 155825595 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100072 S 51 0 1 "" 22086 nsv525807 6 155867719 155888943 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701991 S 2026 0 1 "" nsv5553 6 155868418 155879420 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2621 S 9 0 1 "" NA18555 esv2422505 6 155920634 156767472 CNV Deletion Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161368 S 181 0 1 "" ND03664 nsv519685 6 155926069 155932883 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv658077,nssv657565,nssv658000 M 2026 0 3 "" nsv510059 6 156069442 156075442 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621297 S 4 0 1 "" NA15510 nsv521174 6 156100486 156119659 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv683811,nssv686510 M 2026 0 2 "" nsv348531 6 156173337 156173337 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367109 M 24 "" nsv5555 6 156531818 156565271 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8318 S 9 1 0 "" NA12156 nsv522892 6 156909547 156931685 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698550 S 2026 0 1 "" esv33459 6 157004343 157004724 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100875 S 51 0 1 "" 21656 nsv519889 6 157164928 157201914 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697108 S 2026 0 1 "" esv33003 6 157222867 157928741 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100068 S 51 0 1 "" 22086 nsv507370 6 157273273 157279273 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620363 S 4 1 0 "" NA15510 nsv523413 6 157291505 157325202 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699164 S 2026 1 0 "" nsv508436 6 157337300 157344087 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622561 S 4 0 1 "" NA18994 nsv5556 6 157353069 157398421 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6100 S 9 0 1 "" NA12156 nsv510908 6 157622038 157709553 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622380 S 4 0 0 "" NA10860 nsv509155 6 157701211 157709553 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623486 S 4 1 0 "" NA18994 nsv349327 6 157702615 157703192 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367905 M 24 "" nsv349208 6 157703134 157703541 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367786 M 24 "" nsv349114 6 157703952 157704393 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367692 M 24 "" nsv349938 6 157752216 157752339 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368516 M 24 "" nsv509156 6 157927044 157952477 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623487,nssv618058 M 4 2 0 "" CHM,NA18994 esv33442 6 157939152 158004286 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93888,essv99293,essv97679 M 51 0 3 "" 21634,22275,22278 esv33371 6 158004286 158039959 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv95561 S 51 0 1 "" 21847 nsv521835 6 158070608 158086196 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694608 S 2026 1 0 "" nsv525481 6 158122740 158167735 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701609 S 2026 1 0 "" nsv5557 6 158138083 158173365 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv594,nssv3482,nssv4950 M 9 3 0 "" NA12878,NA19129,NA19240 nsv509157 6 158143192 158180071 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618059,nssv619459,nssv623488 M 4 3 0 "" CHM,NA10860,NA18994 nsv5558 6 158307458 158352217 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4951 S 9 0 1 "" NA19129 nsv518831 6 158330224 158332308 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv657354,nssv681025 M 2026 0 2 "" nsv5559 6 158413037 158435270 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2622 S 9 0 1 "" NA18555 nsv830849 6 158509632 158671291 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445716,nssv1445715 M 95 0 2 "" nsv348752 6 158518692 158519491 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367330 M 24 "" dgv2021e1 6 158598614 158619762 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1090,essv3676 M 271 0 0 "" NA18943 nsv7982 6 158626116 158629532 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15239 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19173 dgv2022e1 6 158649279 158728910 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv12045,esv1094 M 271 0 0 "" NA19116 essv20503 6 158707220 158728910 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12874 nsv5560 6 158776638 158810898 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv595 S 9 1 0 "" NA19240 nsv5561 6 158869970 158895708 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3483 S 9 1 0 "" NA12878 nsv349862 6 158882832 158882922 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368440 M 24 "" nsv518771 6 158984435 158986485 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696221 S 2026 0 1 "" nsv349061 6 158997734 158997734 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367639 M 24 "" nsv5562 6 159047107 159081442 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3485 S 9 1 0 "" NA12878 nsv523641 6 159080090 159080247 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699442 S 2026 1 0 "" nsv528709 6 159093288 159094235 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705359 S 2026 0 1 "" nsv528373 6 159093999 159094235 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704960 S 2026 0 1 "" nsv349192 6 159096256 159096306 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367770 M 24 "" nsv442017 6 159286835 159288983 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv527528 6 159294960 159295381 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703986 S 2026 0 1 "" esv33150 6 159374836 159374900 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99886 S 51 0 1 "" 22086 esv33909 6 159375659 159375946 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99893 S 51 0 1 "" 22086 esv33554 6 159385420 159389361 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100062 S 51 0 1 "" 22086 esv32758 6 159388908 159389986 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101127,essv95488,essv92868 M 51 0 3 "" 21618,21847,21939 esv33761 6 159407443 159409269 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99801 S 51 0 1 "" 22086 nsv519356 6 159530435 159543331 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv673010,nssv655616 M 2026 0 2 "" nsv830850 6 159554670 159749255 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445718,nssv1445719 M 95 2 0 "" nsv830851 6 159618857 159783743 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445721,nssv1445720,nssv1445730,nssv1445742,nssv1445724,nssv1445723,nssv1445725,nssv1445726,nssv1445727,nssv1445741,nssv1445737,nssv1445733,nssv1445732,nssv1445731,nssv1445736,nssv1445735,nssv1445738,nssv1445746,nssv1445744,nssv1445743,nssv1445748,nssv1445747,nssv1445722,nssv1445729,nssv1445745,nssv1445734 M 95 26 0 "" nsv349266 6 159660627 159660847 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367844 M 24 "" nsv526678 6 159718154 159732776 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703010 S 2026 0 1 "" dgv2023e1 6 159974242 160185562 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv20214,essv19692,essv20358,essv15797,essv17139,essv6606,essv24900,esv49,essv11525,essv23525,essv2051,essv12281,essv17779 M 271 0 0 "" NA06993,NA06994,NA10831,NA12144,NA12236,NA12264,NA18621,NA18949,NA19101,NA19131,NA19171,NA19173 nsv7983 6 160055808 160060238 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14835,nssv15256,nssv14525,nssv16332,nssv14797,nssv17183,nssv14364,nssv13639,nssv15048,nssv17474,nssv15034 M 31 0 11 Samples from several populations that are part of the HapMap project. "" NA10839,NA10847,NA11830,NA18502,NA18517,NA18537,NA18552,NA18564,NA18572,NA18972,NA18975 esv32709 6 160057556 160058571 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101470,essv98753,essv101119,essv93966,essv100744,essv96841,essv100937,essv95113,essv98236,essv94354,essv97053,essv95757,essv93175,essv95307,essv97362,essv101659,essv95832,essv95925,essv94521,essv92920,essv92819,essv93754,essv96747,essv98541,essv99817,essv96052,essv93513,essv99647,essv95045,essv92611,essv98031,essv99309,essv97749,essv100200,essv100613,essv100419,essv94212 M 51 35 1 "" 21603,21606,21618,21634,21656,21659,21693,21721,21772,21808,21817,21841,21863,21872,21879,21909,21911,21932,21939,21944,21972,22011,22085,22086,22127,22128,22217,22231,22233,22259,22275,22278,22286,22298,22300,22394 esv33081 6 160071638 160071958 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99561 S 51 1 0 "" 22335 nsv5563 6 160167226 160180050 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9700 S 9 1 0 "" NA18507 nsv5564 6 160335132 160367712 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2623 S 9 1 0 "" NA18555 dgv2024e1 6 160342655 161205076 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2852,essv3847,esv738 M 271 0 0 "" NA18953 esv35098 6 160393000 161041281 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6980105,essv6990444,essv6980106,essv6987005,essv6987004 M 771 1 0 "" NA18953 nsv818463 6 160405980 160995958 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417459 S 112 1 0 "" NA18953 esv33283 6 160527728 160531314 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98664 S 51 1 0 "" 21606 nsv509159 6 160569302 160643992 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618060,nssv620864 M 4 2 0 "" CHM,NA15510 nsv520963 6 160607650 160608487 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv678874,nssv689591 M 2026 0 2 "" nsv7984 6 160669012 160684361 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14865 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18537 dgv397n21 6 160671180 160675565 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv520571,nsv525016 M 2026 0 4 "" nsv7985 6 160685841 160708166 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14394,nssv17640,nssv13601,nssv14725 M 31 4 0 Samples from several populations that are part of the HapMap project. "" NA12872,NA18975,NA18980,NA19221 essv6642 6 160743309 161050209 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18621 essv24539 6 160743311 160745989 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA11831 nsv525990 6 160874033 160941374 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702212 S 2026 0 1 "" nsv5566 6 160876366 160909789 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8319 S 9 1 0 "" NA12156 nsv349217 6 160898804 160898804 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367795 M 24 "" dgv2025e1 6 160903392 161050209 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv3285,essv24482,essv9977,essv24853,essv21301,essv22661,essv24400,essv19581,essv13792,essv295,essv18234,essv7098,essv23852,essv2775,essv6390,essv2614,essv11984,essv15079,essv3883,essv10810,essv1756,essv559,essv2435,essv20602,essv22,essv4182,essv2510,essv3543,essv24293,essv3172,essv23246,essv6126,essv22116,essv1511,essv16879,essv15240,essv4860,essv3715,essv4561,essv8101,essv8289,essv4705,essv18635,essv5920,essv4956,essv24795,essv9250,essv24006,essv17528,essv5087,essv1440,essv21765,essv8811,essv7815,essv9587,essv21664,essv1393,essv5029,essv19611,essv21550,essv15733,essv6738,essv22742,essv15574,essv15468,essv7230,essv18389,essv5354,essv15420,essv14162,essv5827,essv16700,essv1242,essv22895,essv20115,essv20244,essv13170,essv5568,essv18825,essv3105,essv11690,essv1616,essv7757,essv4242,essv16446,essv16026,essv11131,essv12344,essv22544,essv20193,essv8916,essv3797,essv20403,essv9012,essv4035,essv3036,essv23768,essv639,essv14708,essv23355,essv1853,essv6252,essv13643,essv15901,essv20043,essv11583,essv12584,essv13092,essv4171,essv20940,essv24499,essv6013,essv4614,essv23069,essv2333,essv7594,essv7709,essv19271,essv19899,essv8344,essv4431,essv23567,essv23912,essv12987,essv24599,essv5747,essv5138,essv24976,essv18103,essv21125,essv21862,essv15356,essv10411,essv9765,essv8203,essv18352,essv17109,essv14982,essv19090,essv22317,essv10820,essv16771,essv17084,essv19198,essv15643,essv21236,essv17725,essv7283,essv6949,essv17598,essv12696,essv5498,essv9726,essv18745,essv14851,essv4436,essv9467,essv6299,essv18311,essv24723,essv10620,essv17922,essv22943,essv3399,essv21342,essv22838,essv24146,essv23141,essv2067,essv20657,essv7386,essv6913,essv11269,essv13521,essv19012,essv1177,essv22098,essv496,essv5193,essv14094,essv781,essv21058,essv5247,essv7030,essv6826,essv1966,essv16218,essv19779,essv17765,essv2218,essv869,essv12474,essv7345,essv3766,essv1124,essv17447,essv23407,essv2650,essv16140,essv10130,essv4011,essv415 M 271 0 0 "" NA06985,NA06991,NA06993,NA07000,NA07019,NA07022,NA07029,NA07048,NA07055,NA07056,NA07345,NA07348,NA07357,NA10830,NA10831,NA10835,NA10838,NA10839,NA10846,NA10847,NA10854,NA10855,NA10856,NA10857,NA10860,NA11829,NA11830,NA11832,NA11839,NA11992,NA11993,NA11994,NA12003,NA12004,NA12005,NA12043,NA12056,NA12057,NA12144,NA12154,NA12155,NA12234,NA12239,NA12248,NA12249,NA12707,NA12716,NA12750,NA12751,NA12752,NA12753,NA12760,NA12762,NA12763,NA12801,NA12802,NA12812,NA12813,NA12814,NA12815,NA12864,NA12865,NA12872,NA12873,NA12874,NA12878,NA12891,NA12892,NA18501,NA18505,NA18508,NA18517,NA18522,NA18523,NA18524,NA18526,NA18529,NA18532,NA18537,NA18540,NA18542,NA18545,NA18547,NA18550,NA18552,NA18555,NA18558,NA18562,NA18563,NA18564,NA18566,NA18570,NA18571,NA18572,NA18573,NA18576,NA18577,NA18579,NA18582,NA18592,NA18593,NA18594,NA18603,NA18605,NA18609,NA18611,NA18612,NA18622,NA18623,NA18624,NA18632,NA18633,NA18635,NA18636,NA18637,NA18852,NA18855,NA18858,NA18859,NA18861,NA18862,NA18863,NA18870,NA18871,NA18872,NA18912,NA18913,NA18914,NA18940,NA18942,NA18943,NA18944,NA18945,NA18947,NA18949,NA18951,NA18952,NA18956,NA18959,NA18960,NA18961,NA18964,NA18965,NA18967,NA18969,NA18970,NA18971,NA18972,NA18975,NA18976,NA18978,NA18980,NA18981,NA18987,NA18990,NA18991,NA18994,NA18995,NA18997,NA18998,NA18999,NA19000,NA19003,NA19007,NA19012,NA19094,NA19098,NA19099,NA19100,NA19102,NA19103,NA19116,NA19127,NA19128,NA19129,NA19130,NA19131,NA19132,NA19137,NA19138,NA19139,NA19140,NA19141,NA19142,NA19153,NA19154,NA19159,NA19160,NA19161,NA19171,NA19172,NA19173,NA19200,NA19203,NA19204,NA19205,NA19206,NA19207,NA19208,NA19211,NA19222,NA19223 nsv830852 6 160962969 161036351 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445755,nssv1445754,nssv1445753,nssv1445752,nssv1445749,nssv1445756,nssv1445777,nssv1445758,nssv1445757,nssv1445760,nssv1445761,nssv1445759,nssv1445764,nssv1445778,nssv1445763,nssv1445767,nssv1445766,nssv1445765,nssv1445776,nssv1445775,nssv1445770,nssv1445769,nssv1445768,nssv1445772,nssv1445750,nssv1445771,nssv1445774,nssv1445780,nssv1445786,nssv1445779,nssv1445785,nssv1445781,nssv1445783,nssv1445782 M 95 0 34 "" nsv5567 6 160967317 161055070 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv596,nssv2624,nssv10524,nssv6101 M 9 0 4 "" NA12156,NA18555,NA18956,NA19240 esv2750777 6 160981233 160992352 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93678 S 51 0 1 "" 21972 nsv290 6 160981485 161007375 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv290 S 1 1 0 "" NA15510 nsv5568 6 160981485 161007375 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv11138 S 9 1 0 "" NA15510 nsv509160 6 160989194 161046126 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623489,nssv619460,nssv620865 M 4 3 0 "" NA10860,NA15510,NA18994 nsv471501 6 160996001 161039550 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv547846,nssv547847,nssv547844 M 3 "" nsv7986 6 160997465 161052082 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13631,nssv13669,nssv15286,nssv14895,nssv17670,nssv15123,nssv15269,nssv14627,nssv17504,nssv17213,nssv14454,nssv14362,nssv15064,nssv13990,nssv14815,nssv15078,nssv16911,nssv14827,nssv14726,nssv15848,nssv15818,nssv14597,nssv16857,nssv14555 M 31 22 0 Samples from several populations that are part of the HapMap project. "" NA07048,NA10839,NA10847,NA11830,NA12155,NA12802,NA12872,NA18517,NA18537,NA18552,NA18563,NA18564,NA18572,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19173,NA19221 dgv127n17 6 161002129 161041623 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437527,nsv437528 M 60 0 2 "" NA18860,NA19208 esv33502 6 161002386 161026329 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100241 S 51 0 1 "" 22286 nsv5569 6 161011327 161012312 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6102 S 9 1 0 "" NA12156 nsv348956 6 161023467 161028987 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367534 M 24 "" nsv5570 6 161029094 161035279 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10525 S 9 1 0 "" NA18956 nsv5571 6 161116601 161117549 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8320 S 9 1 0 "" NA12156 nsv522773 6 161122860 161141246 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698414 S 2026 0 1 "" nsv522424 6 161132817 161141246 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705777 S 2026 0 1 "" nsv7987 6 161145603 161147061 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14020,nssv14925 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA12802,NA18537 nsv5572 6 161148111 161153251 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv597 S 9 1 0 "" NA19240 nsv830853 6 161150416 161346892 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445787 S 95 0 1 "" nsv5573 6 161159872 161188730 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6103,nssv598,nssv2625 M 9 3 0 "" NA12156,NA18555,NA19240 nsv509161 6 161177052 161177052 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620866 S 4 1 0 "" NA15510 esv2422347 6 161181582 161412788 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161504 S 181 1 0 "" ND01577 nsv509162 6 161184728 161184728 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623490 S 4 1 0 "" NA18994 nsv519976 6 161187019 161189062 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv680941,nssv673803,nssv680004,nssv675571,nssv659842,nssv686233 M 2026 0 6 "" dgv398n21 6 161201212 161230941 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv523929,nsv521351 M 2026 0 2 "" nsv523015 6 161206121 161211252 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698691 S 2026 0 1 "" nsv509163 6 161231255 161252959 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623491 S 4 1 0 "" NA18994 nsv349125 6 161334641 161343446 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367703 M 24 "" nsv526643 6 161529451 161531667 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702969 S 2026 0 1 "" nsv527098 6 161529451 161535569 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703477 S 2026 0 1 "" nsv528938 6 161550943 161554794 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705629 S 2026 0 1 "" esv2752091 6 161562511 161826196 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6983744,essv6983745,essv6988707,essv6986498,essv6986497,essv6983743 M 771 1 0 "" BEC_620 nsv5574 6 161567228 161600538 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4952 S 9 1 0 "" NA19129 esv33824 6 161573547 161579316 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98906,essv100737,essv100004,essv99418 M 51 3 1 "" 21606,21656,22086,22335 nsv5575 6 161581995 161613890 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8321 S 9 0 1 "" NA12156 nsv520807 6 161622414 161623114 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697623 S 2026 0 1 "" nsv349803 6 161656788 161656788 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368381 M 24 "" nsv507371 6 161658738 161664738 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617728 S 4 1 0 "" CHM nsv830854 6 161710337 161897926 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445788 S 95 1 0 "" nsv526663 6 161716561 161721441 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702991 S 2026 0 1 "" nsv5577 6 161745437 161790144 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8322 S 9 0 1 "" NA12156 nsv518931 6 161763730 162376746 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696397 S 2026 1 0 "" nsv519391 6 161783037 161785318 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696829 S 2026 0 1 "" nsv520078 6 161785318 161830421 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv660546,nssv673608 M 2026 0 2 "" dgv2026e1 6 161906087 161907120 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv17418,esv1362 M 271 0 0 "" NA12760 nsv464088 6 161932532 161971847 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540075 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00047 nsv464089 6 162013416 162071589 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540076 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00216 esv2422275 6 162020168 162173206 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161358 S 181 1 0 "" ND05536 nsv516155 6 162062912 162065991 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv677136,nssv666525 M 2026 0 2 "" nsv5578 6 162098686 162156992 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3486,nssv6104,nssv2742 M 9 3 0 "" NA12156,NA12878,NA18555 nsv509164 6 162116698 162154072 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620867,nssv619461 M 4 2 0 "" NA10860,NA15510 nsv349534 6 162121590 162122058 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368112 M 24 "" nsv349740 6 162147916 162151667 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368318 M 24 "" dgv2027e1 6 162161167 162381661 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv117,essv4780 M 271 0 0 "" NA18620 nsv7988 6 162162954 162171223 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16887 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19132 nsv523485 6 162180030 162725017 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699251 S 2026 0 1 "" nsv437529 6 162224557 162241392 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467410 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18521 nsv437015 6 162226699 162234661 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv466896 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA07348 esv2752092 6 162241392 162284965 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6980792,essv6987849 M 771 0 1 "" BEC_158 nsv526090 6 162279535 162294408 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702336 S 2026 0 1 "" esv2752093 6 162291788 162680359 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6983289,essv6986398,essv6988548,essv6982527,essv6982526 M 771 1 0 "" BEC_563 nsv526031 6 162298684 162725017 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702262 S 2026 1 0 "" nsv5579 6 162332097 162366585 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2743 S 9 1 0 "" NA18555 nsv7989 6 162335663 162340573 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17700 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19221 nsv527260 6 162342116 162445845 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703666 S 2026 0 1 "" nsv5580 6 162344338 162373556 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8324 S 9 0 1 "" NA12156 nsv526823 6 162386616 162411098 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703179 S 2026 0 1 "" nsv830855 6 162436536 162627947 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445789 S 95 0 1 "" nsv464090 6 162445845 162500481 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540077 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00402 nsv517562 6 162451871 163220056 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694510,nssv699368,nssv701835,nssv702161,nssv679651,nssv658775,nssv670920,nssv691035,nssv658001,nssv695018,nssv696388,nssv705241,nssv664810,nssv681559,nssv666658,nssv690901,nssv684771,nssv682051,nssv700972,nssv652516,nssv691949,nssv686148,nssv672746,nssv681878,nssv654165,nssv658683,nssv662346,nssv697286,nssv700528,nssv691881,nssv699285,nssv667863,nssv686795,nssv660963,nssv656866,nssv705016,nssv656620,nssv696643,nssv699597,nssv675421,nssv653175,nssv685590,nssv684874,nssv694040,nssv701108,nssv699508,nssv655046,nssv659340,nssv668567,nssv657302,nssv656679,nssv705046,nssv654097,nssv660909,nssv690415,nssv652106,nssv686410,nssv698178,nssv658032,nssv683309 M 2026 5 55 "" nsv464091 6 162459944 162576756 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540078 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00556 dgv2028e1 6 162461349 162478101 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1280,essv12075 M 271 0 0 "" NA19099 nsv7990 6 162466282 162477436 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17730,nssv15299 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA19173,NA19221 nsv442018 6 162466702 162474145 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv818464 6 162469588 162476979 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416554,nssv1416555 M 112 0 2 "" NA19171,NA19173 esv2752094 6 162478000 162888088 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6982991,essv6982994,essv6982993,essv6982992,essv6986316 M 771 1 0 "" BEC_531 dgv26e196 6 162494246 162776211 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array esv2422334,esv2422322,esv2422289 M 181 3 0 "" ND01583,ND04788,ND05093 nsv464093 6 162536129 162914366 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540079 S 1557 1 0 "" NINDS_225 esv2752095 6 162549203 162680359 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6984750,essv6987669 M 771 1 0 "" SPC_173 nsv464094 6 162568363 163077508 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540080 S 1557 1 0 "" 1780854537_A nsv464097 6 162613838 162644504 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540082 S 1557 0 1 "" 1780862452_A esv2752096 6 162613838 162869982 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6984894,essv6988864,essv6987705,essv6984896,essv6984895 M 771 1 0 "" SPC_19 dgv785n27 6 162661829 163014537 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv464110,nsv464102,nsv464114,nsv464104,nsv464099 M 1557 5 0 "" HGDP00192,HGDP01256,HGDP01277,NINDS_226,NINDS_39 esv2752097 6 162680000 162797875 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6984085,essv6989411,essv6989911,essv6984086,essv6984087 M 771 0 1 "" BEC_768 dgv786n27 6 162686952 162913472 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv464103,nsv464105 M 1557 2 0 "" 1780854305_A,1782681296_A esv2752098 6 162701754 162922000 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6981880,essv6981881,essv6981882,essv6988461,essv6985688 M 771 1 0 "" BEC_497 nsv464111 6 162702670 162915950 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540089 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01397 nsv7993 6 162704136 162715964 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15138,nssv14955 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18537,NA18564 nsv830856 6 162705658 162838835 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445790 S 95 1 0 "" dgv2029e1 6 162706292 162710176 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv4939,esv1104 M 271 0 0 "" NA18537 nsv464112 6 162706747 162710176 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540090 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00961 nsv818465 6 162706747 162710176 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417121 S 112 0 1 "" NA18537 nsv442019 6 162708979 162710851 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" essv2371 6 162708980 162710176 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18995 nsv818466 6 162709116 162710176 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417385 S 112 0 1 "" NA18949 nsv464115 6 162748757 162779420 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540092 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01236 esv35102 6 162797875 163027680 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6986930,essv6986931,essv6979743,essv6979744,essv6979745 M 771 1 0 "" NA18620 dgv2030e1 6 162811333 163203672 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv7674,esv670,essv4765 M 271 0 0 "" NA18620 nsv464118 6 162811828 162885397 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540094 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01375 nsv7994 6 162821109 162823337 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15811,nssv14720,nssv14392,nssv17534 M 31 0 4 Samples from several populations that are part of the HapMap project. "" NA18517,NA18853,NA18942,NA19240 nsv349169 6 162822632 162822704 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367747 M 24 "" nsv464119 6 162848818 162880346 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540095 S 1557 0 1 "" NINDS_27 nsv510060 6 162848940 162854940 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621299,nssv624019 M 4 0 2 "" NA15510,NA18994 nsv464120 6 162853895 162896492 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540096 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00151 dgv787n27 6 162885397 162946450 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv464122,nsv464121 M 1557 0 2 "" HGDP01030,NINDS_181 nsv7995 6 162887122 162897273 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17564,nssv15153,nssv13661,nssv15124 M 31 0 4 Samples from several populations that are part of the HapMap project. "" NA07048,NA10839,NA12872,NA18517 nsv464124 6 162994261 163083913 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540099 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00674 nsv830857 6 163035222 163216224 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445796,nssv1445793,nssv1445792,nssv1445791,nssv1445794 M 95 0 5 "" nsv521563 6 163219000 163275837 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698179 S 2026 1 0 "" nsv349630 6 163284508 163284508 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368208 M 24 "" nsv349311 6 163284512 163284512 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367889 M 24 "" nsv464126 6 163331607 163402775 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540100 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00251 nsv520096 6 163562665 163567514 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697221 S 2026 0 1 "" nsv522316 6 163599334 163602069 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695096 S 2026 0 1 "" nsv509165 6 163686510 163762960 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619462 S 4 1 0 "" NA10860 nsv523664 6 163828648 163878296 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699465 S 2026 1 0 "" esv2750737 6 163880641 163881365 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv96024 S 51 0 1 "" 22127 nsv524205 6 163889928 163908742 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700091 S 2026 0 1 "" dgv2031e1 6 163962475 164132314 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv439,essv18696 M 271 0 0 "" NA12874 nsv523059 6 163997955 163998169 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698743 S 2026 0 1 "" nsv349280 6 164005365 164005421 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367858 M 24 "" nsv5581 6 164119193 164128406 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2744 S 9 1 0 "" NA18555 nsv520292 6 164145028 164161330 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697331 S 2026 1 0 "" nsv830858 6 164266465 164426154 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445797 S 95 1 0 "" nsv349951 6 164334761 164334906 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368529 M 24 "" nsv5582 6 164360764 164376138 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8325 S 9 0 1 "" NA12156 nsv507372 6 164434086 164440086 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621865,nssv617729,nssv620364 M 4 3 0 "" CHM,NA10860,NA15510 nsv5583 6 164511834 164529926 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2627 S 9 0 1 "" NA18555 nsv830860 6 164524025 164714602 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445799,nssv1445798,nssv1445800 M 95 1 2 "" nsv507373 6 164563893 164569893 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617730,nssv621866 M 4 2 0 "" CHM,NA10860 nsv528815 6 164599500 164601873 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705489 S 2026 0 1 "" nsv348661 6 164719879 164722025 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367239 M 24 "" nsv518738 6 164979887 164984306 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696188 S 2026 0 1 "" nsv830861 6 164984886 165201615 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445802,nssv1445803,nssv1445801 M 95 0 3 "" nsv525815 6 164988284 165233306 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702000 S 2026 1 0 "" dgv788n27 6 165101283 165160252 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv464129,nsv464133,nsv464132 M 1557 3 0 "" HGDP00769,HGDP00876,HGDP01244 dgv789n27 6 165101283 165184426 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv464131,nsv464130,nsv464134,nsv464135 M 1557 4 0 "" HGDP00125,HGDP00703,HGDP00861,HGDP00872 nsv830862 6 165103233 165281497 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445804,nssv1445805 M 95 0 2 "" nsv528060 6 165122485 165160252 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704594 S 2026 1 0 "" nsv5584 6 165142785 165176672 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6105,nssv599,nssv9701,nssv4953,nssv2628,nssv10526,nssv3487 M 9 7 0 "" NA12156,NA12878,NA18507,NA18555,NA18956,NA19129,NA19240 nsv509166 6 165165604 165165604 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618061 S 4 1 0 "" CHM nsv509167 6 165172412 165172412 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620868 S 4 1 0 "" NA15510 nsv521153 6 165249804 165313968 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv683109,nssv693520,nssv701001 M 2026 2 1 "" nsv519171 6 165335063 165339538 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696653 S 2026 0 1 "" nsv5585 6 165525000 165558744 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8326 S 9 1 0 "" NA12156 nsv5586 6 165664859 165717628 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4954,nssv9702,nssv2629,nssv9436,nssv3488,nssv600 M 9 0 6 "" NA12878,NA18507,NA18517,NA18555,NA19129,NA19240 nsv508438 6 165673766 165731060 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619985,nssv622562 M 4 0 2 "" NA15510,NA18994 nsv441763 6 165698228 165702339 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv523973 6 165769374 165770025 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699826 S 2026 0 1 "" nsv830863 6 165773875 165940502 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445807 S 95 1 0 "" nsv510061 6 165774730 165780730 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624020 S 4 0 1 "" NA18994 nsv522249 6 165784210 165784584 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695029 S 2026 0 1 "" nsv464136 6 165808211 165833303 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540109 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00521 nsv818468 6 165847842 165863758 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418156 S 112 1 0 "" NA19144 dgv399n21 6 165847842 165879873 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv516359,nsv528284 M 2026 4 0 "" dgv790n27 6 165881117 165917183 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv464138,nsv464137 M 1557 0 2 "" 1780862014_A,1782681169_A nsv5588 6 165890230 165923733 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4955 S 9 1 0 "" NA19129 nsv523862 6 166034563 166040835 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699699 S 2026 0 1 "" esv33295 6 166043992 166049165 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98134,essv97265,essv100071,essv93273 M 51 4 0 "" 21772,22075,22086,22170 dgv2032e1 6 166112052 166269346 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv23686,esv268 M 271 0 0 "" NA10863 nsv521894 6 166125316 166131182 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694666 S 2026 0 1 "" nsv5589 6 166133534 166166016 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10527 S 9 1 0 "" NA18956 nsv7996 6 166256702 166258731 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17790 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19221 nsv5590 6 166451030 166497669 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv601 S 9 0 1 "" NA19240 nsv508439 6 166465058 166480639 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622563 S 4 0 1 "" NA18994 nsv521577 6 166598500 166601602 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698193 S 2026 1 0 "" nsv348921 6 166605929 166605996 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367499 M 24 "" nsv528092 6 166643483 166643901 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704630 S 2026 0 1 "" nsv509168 6 166651974 166674963 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623492,nssv620869,nssv619463 M 4 3 0 "" NA10860,NA15510,NA18994 nsv510952 6 166651974 166674963 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618655 S 4 0 0 "" CHM nsv523548 6 166766844 166790185 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699326 S 2026 0 1 "" dgv400n21 6 166855176 166866345 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv528806,nsv522905 M 2026 0 2 "" nsv7388 6 166855830 166895755 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv602 S 9 0 0 "" NA19240 nsv5591 6 166909107 166938108 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2630 S 9 1 0 "" NA18555 nsv5592 6 166928728 166973362 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8327 S 9 0 1 "" NA12156 nsv349126 6 166969402 166970591 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367704 M 24 "" nsv518561 6 167171224 167171444 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696004 S 2026 0 1 "" nsv348883 6 167242917 167242977 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367461 M 24 "" nsv464140 6 167397092 167462963 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540113 S 1557 0 1 "" 1780854255_A esv2752099 6 167418592 167549513 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6983467,essv6986445,essv6983466 M 771 1 0 "" BEC_658 nsv519550 6 167421020 167444096 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696915 S 2026 0 1 "" nsv469673 6 167470787 167628943 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649603 M 265 0 2 Samples from several populations that are part of the HapMap project. "" essv22845 6 167471615 167816346 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12004 dgv2033e1 6 167471615 167995289 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv794,essv22693 M 271 0 0 "" NA12004 nsv7997 6 167479005 167482979 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16362,nssv14845,nssv16917 M 31 3 0 Samples from several populations that are part of the HapMap project. "" NA18502,NA18980,NA19132 nsv7998 6 167513351 167515042 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16813 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18504 nsv7999 6 167523126 167528719 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17243 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18972 nsv464141 6 167542322 167803968 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540114 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00929 nsv7389 6 167543108 167803243 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9703,nssv9704,nssv604,nssv603 M 9 0 0 "" NA18507,NA19240 nsv8000 6 167551089 167562432 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17820 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19221 nsv516079 6 167574558 167574668 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv681317,nssv680491,nssv666055,nssv660943,nssv657429,nssv655316,nssv684036,nssv659620,nssv658268,nssv673804 M 2026 0 10 "" nsv525755 6 167574558 167593239 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701923 S 2026 0 1 "" nsv464142 6 167574558 167598171 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540115 S 1557 1 0 "" 1780854477_A nsv526403 6 167585144 167590842 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702702 S 2026 0 1 "" nsv519632 6 167585421 167598171 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696961 S 2026 0 1 "" nsv523035 6 167590842 167635737 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698718 S 2026 1 0 "" esv34252 6 167592000 167782909 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6978592,essv6978593,essv6978591,essv6986652 M 771 1 0 "" NA12004 nsv509170 6 167599893 167682714 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623493 S 4 1 0 "" NA18994 nsv464144 6 167618283 167658303 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540116 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01069 nsv8001 6 167629818 167632559 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17273 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18972 nsv517210 6 167653480 167748909 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv663110,nssv692177,nssv678542,nssv669483,nssv660848,nssv686074,nssv655047,nssv681537,nssv672193,nssv700672,nssv701744,nssv678827,nssv654018,nssv701465,nssv665181,nssv696677,nssv695167 M 2026 1 16 "" nsv464145 6 167695061 167748909 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540117 S 1557 0 1 "" 1780854477_A nsv348788 6 167702468 167702533 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367366 M 24 "" esv33288 6 167710271 167711819 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100794 S 51 0 1 "" 21656 nsv8002 6 167766568 167778705 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16843,nssv16392,nssv15154,nssv14484,nssv16947,nssv17303,nssv15878,nssv14875 M 31 8 0 Samples from several populations that are part of the HapMap project. "" NA10839,NA12155,NA18502,NA18504,NA18972,NA18975,NA18980,NA19132 nsv527667 6 167784500 167789272 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704142 S 2026 0 1 "" nsv515756 6 167797226 167802447 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv691798,nssv676510,nssv664694 M 2026 0 3 "" nsv509171 6 167879902 167951967 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620870 S 4 1 0 "" NA15510 esv2422263 6 167888852 168365960 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161460 S 181 1 0 "" ND04498 nsv348674 6 167891115 167891115 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367252 M 24 "" nsv348795 6 167928873 167928873 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367373 M 24 "" nsv509172 6 167976297 168028813 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619464 S 4 1 0 "" NA10860 dgv27e196 6 167986883 168365960 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array esv2422208,esv2422377,esv2422375,esv2422465,esv2422357,esv2422271 M 181 6 0 "" ND00940,ND01565,ND02862,ND03047,ND03102,ND04361 nsv830864 6 168027500 168179021 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445808 S 95 1 0 "" dgv217e55 6 168042843 168445626 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv34861,esv2752100,esv2752101 M 771 3 0 "" BEC_395,BEC_705,NA12815 dgv2034e1 6 168055424 168533940 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv22328,essv18423,essv24508,esv713,essv21144 M 271 0 0 "" NA06985,NA12249,NA12802,NA12815 esv2422479 6 168064133 168257228 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161505 S 181 1 0 "" ND03830 nsv830865 6 168090302 168299247 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445809 S 95 1 0 "" dgv218e55 6 168122876 168446000 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv2752110,esv2752112,esv2752102,esv34560,esv2752104,esv34258,esv35125,esv2752103,esv2752105,esv2752106,esv2752107,esv2752108,esv2752109,esv2752111 M 771 14 0 "" BEC_182,BEC_415,BEC_535,BEC_661,BEC_675,BEC_737,BEC_817,NA06985,NA12249,NA12802,SPC_102,SPC_38,SPC_83,SPC_86 nsv515568 6 168136372 168427891 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv666637,nssv655977,nssv668141,nssv701625,nssv696820,nssv663929,nssv670545,nssv682244,nssv694840,nssv671628,nssv666881,nssv667298,nssv701335,nssv654873,nssv667552,nssv681569,nssv676241,nssv689118,nssv666706,nssv693442,nssv674061,nssv688132,nssv669582,nssv678176,nssv685952,nssv664114,nssv679985,nssv700319 M 2026 19 9 "" esv32818 6 168147432 168433567 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93344 S 51 1 0 "" 22170 dgv791n27 6 168149491 168417889 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv464197,nsv464151,nsv464188,nsv464198,nsv464152,nsv464196,nsv464149,nsv464189,nsv464162,nsv464183,nsv464182,nsv464155,nsv464178,nsv464190,nsv464154,nsv464153,nsv464186,nsv464185,nsv464160,nsv464148,nsv464181,nsv464187,nsv464180,nsv464179,nsv464159,nsv464200 M 1557 26 0 "" 1780846005_A,1780854231_A,1780854318_A,1780854326_A,1780854393_A,1780854417_A,1780854444_A,1780854486_A,1780854556_A,1780862246_A,1780862334_A,1780862419_A,1780862557_A,1780862587_A,1782681236_A,1787431198_A,1798860592_A,HGDP00644,HGDP00669,HGDP01373,NINDS_103,NINDS_184,NINDS_195,NINDS_218,NINDS_256,NINDS_33 dgv2035e1 6 168151009 168425764 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv19355,essv20475,essv20681,essv22019 M 271 0 0 "" NA06985,NA12249,NA12802,NA12815 nsv8004 6 168151798 168345319 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14050 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA12802 nsv442020 6 168153832 168414471 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv61n64 6 168162394 168414807 CNV Gain Wang_et_al_2007 17921354 SNP_array nsv818470,nsv818469 M 112 2 0 "" NA06985,NA12249 nsv509173 6 168164986 168312767 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619465,nssv623494 M 4 2 0 "" NA10860,NA18994 nsv5593 6 168188416 168219084 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3489,nssv2746 M 9 2 0 "" NA12878,NA18555 nsv830866 6 168261119 168443681 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445810 S 95 1 0 "" nsv464201 6 168281321 168293505 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540149 S 1557 0 1 "" 1780862197_A nsv350028 6 168295089 168295154 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368606 M 24 "" nsv8005 6 168349968 168417269 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14110 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA12802 nsv830867 6 168422713 168592934 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445812,nssv1445811 M 95 0 2 "" nsv5594 6 168435975 168471478 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4956,nssv6106,nssv3490 M 9 3 0 "" NA12156,NA12878,NA19129 nsv8006 6 168451353 168457325 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16977,nssv16452,nssv17594,nssv15238,nssv14657,nssv14140,nssv14816,nssv14514,nssv16873,nssv16941,nssv13699,nssv15841 M 31 9 3 Samples from several populations that are part of the HapMap project. "" NA12802,NA18502,NA18504,NA18517,NA18563,NA18572,NA18860,NA18975,NA19007,NA19132,NA19144,NA19240 nsv349831 6 168453035 168456931 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368409 M 24 "" nsv349216 6 168515197 168515269 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367794 M 24 "" nsv526129 6 168529726 168538480 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702383 S 2026 0 1 "" nsv8007 6 168533806 168545573 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15184,nssv15396,nssv17850,nssv16482,nssv15316,nssv16971,nssv15908 M 31 5 2 Samples from several populations that are part of the HapMap project. "" NA10839,NA10863,NA12155,NA18502,NA18552,NA18860,NA19221 nsv349328 6 168535475 168537080 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367906 M 24 "" nsv830868 6 168552322 168745968 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445813 S 95 1 0 "" nsv349197 6 168553550 168553697 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367775 M 24 "" nsv349909 6 168554031 168554178 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368487 M 24 "" nsv348819 6 168567297 168567378 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367397 M 24 "" nsv348878 6 168602529 168603026 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367456 M 24 "" nsv8008 6 168688314 168697004 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14857 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA11830 nsv442021 6 168691609 168696437 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv516247 6 168693335 168694173 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv674062,nssv667036 M 2026 0 2 "" dgv2036e1 6 168701943 168857249 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv3230,essv21272,essv8790,essv7431,essv8469,essv16826,essv8231,essv14589,essv20251,essv14866,essv11819,essv50,essv881,essv3179,essv15270,essv9986,essv2579,essv10776,essv7197,essv18953,essv16815,essv20349,essv20058,essv12503,essv12192,essv16441,essv16994,essv11701,essv5281,essv23655,essv13778,essv4368,essv17508,essv4484,essv11869,essv15870,essv1764,essv16347,essv6268,essv11550,essv19265,essv20192,esv113,essv9365,essv11272,essv16135,essv8607,essv10686,essv14073,essv23909,essv15327,essv17126,essv14337,essv14993,essv15630,essv9667,essv12722,essv5483,essv18848,essv6833,essv22780,essv12659,essv5121,essv8087,essv1133,essv20556,essv23580,essv22227,essv403,essv10273,essv1254 M 271 0 0 "" NA07019,NA07048,NA07056,NA10838,NA10855,NA10863,NA11832,NA12005,NA12006,NA12044,NA12144,NA12236,NA12751,NA12762,NA12814,NA18500,NA18506,NA18508,NA18516,NA18521,NA18522,NA18523,NA18547,NA18552,NA18573,NA18577,NA18579,NA18623,NA18624,NA18632,NA18636,NA18853,NA18855,NA18861,NA18862,NA18870,NA18872,NA18912,NA18913,NA18914,NA18964,NA18971,NA18974,NA18990,NA18991,NA18995,NA18997,NA19000,NA19012,NA19093,NA19094,NA19099,NA19100,NA19101,NA19116,NA19139,NA19144,NA19153,NA19154,NA19171,NA19173,NA19193,NA19194,NA19204,NA19205,NA19206,NA19207,NA19221,NA19223,NA19239 nsv350124 6 168708496 168708642 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368702 M 24 "" nsv5595 6 168711475 168756153 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8328 S 9 0 1 "" NA12156 nsv524357 6 168737297 168742117 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700268 S 2026 0 1 "" nsv522533 6 168771247 168775359 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705905 S 2026 0 1 "" nsv8009 6 168779504 168782423 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15214,nssv13729,nssv14687,nssv15168,nssv16512,nssv15346,nssv14552,nssv15879,nssv14810,nssv16903,nssv15329 M 31 2 9 Samples from several populations that are part of the HapMap project. "" NA07029,NA10839,NA12740,NA18502,NA18504,NA18552,NA18563,NA18564,NA18572,NA18853,NA19173 nsv442022 6 168794436 168796266 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv509174 6 168800462 168822821 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619466,nssv623495 M 4 2 0 "" NA10860,NA18994 dgv2037e1 6 168811525 168857249 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv17914,essv12585 M 271 0 0 "" NA12003,NA19098 nsv349668 6 168814319 168814377 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368246 M 24 "" nsv510953 6 168822821 168917578 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621595 S 4 0 0 "" NA15510 nsv525282 6 168823050 168823353 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701386 S 2026 0 1 "" nsv830869 6 168830394 168929347 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445814 S 95 0 1 "" nsv348653 6 168830470 168830708 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367231 M 24 "" nsv510062 6 168834704 168840704 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622130,nssv624021,nssv618250 M 4 0 3 "" CHM,NA10860,NA18994 nsv509175 6 168853038 168917578 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619467 S 4 1 0 "" NA10860 nsv7390 6 168874001 168912441 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9705 S 9 0 0 "" NA18507 nsv464204 6 168904160 168942971 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540150 S 1557 0 1 "" 1780854354_A nsv464205 6 169007771 169183274 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540151 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01294 nsv349115 6 169040797 169041076 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367693 M 24 "" nsv509176 6 169049886 169060999 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620872,nssv623496 M 4 2 0 "" NA15510,NA18994 nsv5596 6 169050690 169059132 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2631 S 9 1 0 "" NA18555 nsv349653 6 169057595 169057595 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368231 M 24 "" nsv350164 6 169065229 169065670 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368742 M 24 "" nsv464207 6 169083427 169117006 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540153 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00135 nsv518165 6 169160778 169169723 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694207 S 2026 0 1 "" nsv348449 6 169208357 169208852 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367027 M 24 "" nsv348516 6 169209255 169209459 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367094 M 24 "" nsv348740 6 169285432 169285489 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367318 M 24 "" nsv464209 6 169315934 169333828 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540154 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00717 dgv2038e1 6 169319421 169350071 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2136,essv5965,esv1130,essv6508 M 271 0 0 "" NA18552,NA18572,NA18978 essv5625 6 169323300 169335736 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18579 nsv8010 6 169323679 169343677 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15376,nssv13789 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18552,NA18572 dgv792n27 6 169324072 169338192 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv464212,nsv464213,nsv464220,nsv464214,nsv464216,nsv464222,nsv464219,nsv464221,nsv464218,nsv464211,nsv464210,nsv464215 M 1557 0 12 "" HGDP00780,HGDP00782,HGDP00786,HGDP00812,HGDP00950,HGDP00951,HGDP00958,HGDP01102,HGDP01180,HGDP01182,HGDP01197,HGDP01245 nsv526115 6 169324072 169338192 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702365 S 2026 0 1 "" nsv818471 6 169324072 169357687 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417607 S 112 0 1 "" NA18978 nsv442023 6 169325415 169336567 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv8011 6 169335703 169347332 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16542,nssv17624,nssv16933 M 31 3 0 Samples from several populations that are part of the HapMap project. "" NA18502,NA18504,NA18517 nsv5597 6 169447161 169482868 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8329 S 9 0 1 "" NA12156 nsv349787 6 169478077 169478152 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368365 M 24 "" nsv5599 6 169487392 169506501 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10528 S 9 1 0 "" NA18956 nsv350017 6 169532117 169532297 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368595 M 24 "" nsv349466 6 169558695 169558746 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368044 M 24 "" dgv2039e1 6 169563923 169651825 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv23812,esv491,essv9069 M 271 0 0 "" NA12763,NA19132 nsv349395 6 169591662 169591723 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367973 M 24 "" nsv8012 6 169636945 169638529 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14846 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19007 nsv8013 6 169642647 169644746 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15198 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18564 nsv348472 6 169731358 169731358 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367050 M 24 "" nsv348441 6 169731476 169731476 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367019 M 24 "" nsv5600 6 169765138 169787319 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3491 S 9 1 0 "" NA12878 nsv830872 6 169787175 169963936 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445815 S 95 0 1 "" nsv464223 6 169851165 169909341 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540168 S 1557 0 1 "" 1780862444_A nsv349626 6 169855751 169856077 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368204 M 24 "" nsv349459 6 169862457 169862797 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368037 M 24 "" nsv350093 6 170000287 170000433 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368671 M 24 "" nsv521802 6 170015433 170024357 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694572 S 2026 0 1 "" nsv464224 6 170024357 170072678 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540169 S 1557 0 1 "" NINDS_74 nsv348890 6 170025072 170025123 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367468 M 24 "" nsv349995 6 170046580 170046995 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368573 M 24 "" nsv349499 6 170046769 170047088 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368077 M 24 "" nsv433381 6 170288501 170300555 CNV Gain Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463262 S 9 1 0 Samples from several populations that are part of the HapMap project. "" NA19240 nsv830873 6 170302446 170394363 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445816,nssv1445820,nssv1445818,nssv1445819,nssv1445822,nssv1445821,nssv1445824,nssv1445827,nssv1445826,nssv1445823,nssv1445825 M 95 1 10 "" nsv509177 6 170316077 170500984 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619468,nssv623497,nssv619470,nssv619469,nssv620873,nssv620874,nssv623498 M 4 3 0 "" NA10860,NA15510,NA18994 nsv5601 6 170318901 170348792 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2747 S 9 1 0 "" NA18555 nsv464225 6 170362150 170384490 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540170 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00518 nsv524520 6 170363502 170370179 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700466 S 2026 0 1 "" nsv525696 6 170363502 170419995 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701856 S 2026 0 1 "" nsv5602 6 170366776 170406616 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8330,nssv605 M 9 2 0 "" NA12156,NA19240 nsv349307 6 170372118 170372360 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367885 M 24 "" nsv349391 6 170401785 170404213 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367969 M 24 "" nsv5603 6 170443845 170465507 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6107 S 9 1 0 "" NA12156 nsv523383 6 170471648 170503387 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699132 S 2026 0 1 "" nsv518303 6 170481712 170484617 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695734 S 2026 0 1 "" nsv464226 6 170490373 170535242 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540171 S 1557 0 1 "" 1780862019_A dgv2040e1 6 170499383 170761941 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv24,essv14594,essv22093,essv20351,essv19683,essv24707,essv13430,essv10520,essv22776,essv18974,essv23575,essv10283 M 271 0 0 "" NA07019,NA11829,NA12005,NA12006,NA12154,NA12236,NA12264,NA18506,NA18991,NA19093,NA19192,NA19240 esv344 6 170499383 170927551 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 "" nsv348998 6 170501850 170501929 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv367576 M 24 "" nsv8015 6 170521802 170524237 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15938,nssv17001 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA12155,NA18860 nsv8016 6 170545091 170548657 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15968 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA12155 nsv8017 6 170569621 170571732 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17007,nssv16963,nssv14905 M 31 2 1 Samples from several populations that are part of the HapMap project. "" NA18504,NA18980,NA19132 nsv509178 6 170599154 170617963 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623499,nssv620875 M 4 2 0 "" NA15510,NA18994 nsv510954 6 170599154 170622786 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618656 S 4 0 0 "" CHM nsv8018 6 170603541 170604994 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16993,nssv15998,nssv15228,nssv15268,nssv17031,nssv14717,nssv15456,nssv15244,nssv16572,nssv14585,nssv15183,nssv14170,nssv15871,nssv14985,nssv14887,nssv15359,nssv17333,nssv14935,nssv17037,nssv17880,nssv13819,nssv14840,nssv14452,nssv14544,nssv14582 M 31 0 25 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10847,NA10863,NA11830,NA12155,NA12802,NA18502,NA18504,NA18537,NA18563,NA18564,NA18572,NA18853,NA18860,NA18942,NA18972,NA18975,NA18980,NA19132,NA19144,NA19173,NA19221,NA19240 nsv522949 6 170605303 170629811 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698616 S 2026 0 1 "" esv33609 6 170607803 170613975 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99502 S 51 1 0 "" 22335 nsv5604 6 170610082 170614168 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2632 S 9 1 0 "" NA18555 nsv5605 6 170614279 170644126 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6109,nssv9899,nssv3492,nssv4957 M 9 4 0 "" NA12156,NA12878,NA18507,NA19129 nsv509179 6 170622786 170643751 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619471 S 4 1 0 "" NA10860 nsv8019 6 170625015 170627478 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14612,nssv15901,nssv14200,nssv16028,nssv17910,nssv14917,nssv14615,nssv17067,nssv15909,nssv15213,nssv16602,nssv15486,nssv15389,nssv17061,nssv15274,nssv17023,nssv17654 M 31 17 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10847,NA10863,NA11830,NA12155,NA12740,NA12802,NA18502,NA18504,NA18517,NA18860,NA19132,NA19173,NA19221,NA19240 nsv8020 6 170682021 170695843 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14870,nssv15273,nssv16632,nssv17393,nssv17363,nssv15243,nssv17940,nssv17684,nssv14645,nssv15479,nssv14642,nssv17714,nssv15419,nssv17127,nssv15516,nssv17053 M 31 8 8 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10847,NA10863,NA18502,NA18504,NA18517,NA18853,NA18972,NA19132,NA19173,NA19221 nsv349602 6 170692897 170692950 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv368180 M 24 "" nsv8021 6 170720441 170724757 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15406,nssv14876,nssv16662,nssv17453,nssv14574,nssv15509,nssv13691,nssv17774 M 31 1 7 Samples from several populations that are part of the HapMap project. "" NA12872,NA18502,NA18517,NA18552,NA18972,NA18975,NA19007,NA19173 nsv518447 6 170725438 170750402 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695885 S 2026 0 1 "" dgv2041e1 6 170738849 170927551 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv14781,essv4707 M 271 0 0 "" NA18622,NA19159 nsv830874 6 170765445 170955886 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445829 S 95 0 1 "" nsv8022 6 170849927 170963137 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17113,nssv15569,nssv17121,nssv15546,nssv15304,nssv13849,nssv15539,nssv14675,nssv15015,nssv14947,nssv14230 M 31 3 7 Samples from several populations that are part of the HapMap project. "" NA10839,NA10847,NA10863,NA11830,NA12802,NA18504,NA18537,NA18572,NA18860,NA19173 esv32645 6 170856685 170943125 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv96786,essv101332,essv94414,essv95344,essv97361,essv99236 M 51 0 6 "" 21659,21805,21808,21872,21879,22275 nsv5606 6 170936493 170969559 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8332 S 9 1 0 "" NA12156 nsv469539 7 47371 142560 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649649 M 265 0 0 Samples from several populations that are part of the HapMap project. "" nsv8023 7 105852 175838 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14900,nssv17157,nssv16692,nssv14930,nssv17834,nssv15258,nssv15303,nssv17804,nssv15576,nssv15333,nssv16058,nssv14604,nssv15334,nssv14705,nssv15599,nssv14807,nssv14906,nssv15939,nssv15364,nssv13879,nssv17187 M 31 8 11 Samples from several populations that are part of the HapMap project. "" NA07048,NA10839,NA10847,NA10863,NA12155,NA12740,NA18502,NA18517,NA18563,NA18564,NA18572,NA18853,NA18975,NA19007,NA19132,NA19173 dgv2042e1 7 106471 298664 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv684,essv15647,essv1840,essv12266,essv24130,essv19635,essv7608,essv2696,essv10105,essv21672,essv19663,esv701,essv19769,essv12708,essv20089 M 271 0 0 "" NA07048,NA10835,NA10847,NA12155,NA12248,NA12264,NA18545,NA18912,NA18914,NA18967,NA18975,NA18976,NA19101,NA19130 nsv830875 7 120498 323409 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445830,nssv1445831 M 95 2 0 "" nsv442024 7 138438 163742 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" esv33499 7 140242 182147 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93897,essv98133,essv92969 M 51 3 0 "" 21634,21772,21939 nsv818472 7 140736 162903 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416447,nssv1415767,nssv1417436,nssv1417254,nssv1416448,nssv1416743 M 112 6 0 "" NA12874,NA18515,NA18517,NA18577,NA18952,NA19159 nsv433382 7 140736 164003 CNV Gain Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463263 S 9 1 0 Samples from several populations that are part of the HapMap project. "" NA18517 dgv793n27 7 140736 188894 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv464232,nsv464227,nsv464233,nsv464231,nsv464229,nsv464230 M 1557 6 0 "" HGDP00078,HGDP00100,HGDP00149,HGDP00392,HGDP00936,HGDP01277 dgv794n27 7 140736 203357 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv464234,nsv464241 M 1557 0 2 "" 1780854419_A,HGDP00438 dgv795n27 7 140736 208402 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv464236,nsv464235,nsv464237,nsv464238 M 1557 4 0 "" 1780854023_A,HGDP00457,HGDP00538,HGDP01036 nsv516015 7 140736 223289 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700553,nssv689083,nssv689865,nssv687306,nssv675776,nssv665738,nssv660096,nssv662667,nssv672336,nssv666682,nssv702187,nssv681903,nssv677203,nssv678519 M 2026 11 3 "" nsv464240 7 140736 271353 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540185 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00183 dgv219e55 7 141322 160848 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv35049,esv2752148 M 771 2 0 "" BEC_721,NA07034 dgv2043e1 7 141322 166807 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv15928,essv23279,essv3633,essv24110,essv19030,essv3686,essv2110,essv3926 M 271 0 0 "" NA07034,NA07048,NA07345,NA18515,NA18943,NA18959,NA18966,NA18970 dgv220e55 7 141322 166807 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv2752149,esv34206 M 771 2 0 "" BEC_506,NA18970 dgv2044e1 7 141322 189431 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv5943,essv8658,essv522,essv17359 M 271 0 0 "" NA18517,NA18577,NA18952,NA19101 essv5632 7 155737 166807 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18579 essv13358 7 158399 189089 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19159 nsv464242 7 180194 295765 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540187 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00064 nsv8024 7 188430 197026 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17151,nssv17483 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18860,NA18972 nsv528153 7 219039 271353 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704701 S 2026 0 1 "" nsv523285 7 219039 295765 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699024 S 2026 0 1 "" nsv508440 7 233136 265504 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622564 S 4 0 1 "" NA18994 nsv517159 7 234196 250149 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv654790,nssv661193,nssv679835,nssv676914,nssv677681,nssv672291,nssv662222,nssv659150,nssv682996,nssv653895,nssv665550,nssv656644,nssv693768,nssv672489,nssv679850,nssv667112,nssv681881,nssv655647 M 2026 0 18 "" nsv464243 7 234196 295765 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540188 S 1557 0 1 "" 1780854524_A nsv5610 7 244624 256725 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2635 S 9 0 1 "" NA18555 nsv8026 7 246346 254838 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13909,nssv14965,nssv14837,nssv14634 M 31 0 4 Samples from several populations that are part of the HapMap project. "" NA18563,NA18572,NA18975,NA18980 nsv437979 7 246846 249228 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv468888,nssv468887,nssv468892,nssv468885,nssv468889,nssv468891,nssv468890 M 269 0 7 Samples from several populations that are part of the HapMap project. "" NA18608,NA18948,NA18953,NA18966,NA18975,NA18978,NA19000 nsv441791 7 250145 253709 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv366441 7 263539 263539 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv385019 M 24 "" nsv509181 7 265504 265504 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623500 S 4 1 0 "" NA18994 nsv365954 7 551921 551921 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384532 M 24 "" nsv366851 7 555414 555489 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv385429 M 24 "" nsv366757 7 580922 580977 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv385335 M 24 "" nsv464244 7 685996 795969 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540189 S 1557 0 1 "" NINDS_51 nsv509182 7 694096 830887 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619472,nssv623501,nssv620876 M 4 3 0 "" NA10860,NA15510,NA18994 nsv5611 7 696716 723426 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3497,nssv4961,nssv607,nssv2748 M 9 4 0 "" NA12878,NA18555,NA19129,NA19240 nsv464245 7 699318 878667 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540190 S 1557 1 0 "" 1798860071_A nsv366410 7 724592 724711 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384988 M 24 "" nsv366941 7 749925 749925 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv385519 M 24 "" nsv482099 7 796076 802517 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558460 S 1 1 0 "" KB1 nsv509183 7 853442 910367 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619473 S 4 1 0 "" NA10860 nsv5612 7 888570 923176 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2750 S 9 1 0 "" NA18555 nsv830876 7 890888 1053445 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445832,nssv1445834,nssv1445833,nssv1445835 M 95 0 4 "" nsv365634 7 894574 894630 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384212 M 24 "" nsv8027 7 928117 930945 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15363,nssv14960,nssv15629,nssv13939,nssv14482,nssv17864,nssv15045,nssv14795,nssv13721,nssv14664 M 31 8 2 Samples from several populations that are part of the HapMap project. "" NA07048,NA10847,NA12872,NA18517,NA18537,NA18572,NA18853,NA18942,NA18975,NA19173 nsv365945 7 929792 930402 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384523 M 24 "" nsv522801 7 934399 964930 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698446 S 2026 0 1 "" nsv508441 7 938879 987481 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622566 S 4 0 1 "" NA18994 nsv366720 7 958306 960895 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv385298 M 24 "" dgv2045e1 7 972336 1463188 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv237,essv14108 M 271 0 0 "" NA18861 nsv830877 7 973522 1082320 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445836,nssv1445837 M 95 0 2 "" nsv509184 7 987481 1010379 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618062,nssv619474,nssv623502 M 4 3 0 "" CHM,NA10860,NA18994 nsv365981 7 996720 997164 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384559 M 24 "" nsv5613 7 999858 1038379 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4962,nssv10531,nssv608,nssv6111 M 9 4 0 "" NA12156,NA18956,NA19129,NA19240 nsv5614 7 1073284 1103086 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8333,nssv2636,nssv3498 M 9 3 0 "" NA12156,NA12878,NA18555 nsv509185 7 1081782 1094304 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619476,nssv623503 M 4 2 0 "" NA10860,NA18994 nsv8028 7 1083752 1088883 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14936,nssv14867,nssv14977,nssv13969,nssv15288,nssv17181,nssv15394,nssv17513,nssv16118,nssv16722,nssv15393,nssv14995,nssv14694,nssv17970,nssv13781,nssv15931 M 31 16 0 Samples from several populations that are part of the HapMap project. "" NA07048,NA10839,NA11830,NA12155,NA12872,NA18502,NA18563,NA18564,NA18572,NA18860,NA18972,NA18975,NA18980,NA19007,NA19221,NA19240 nsv433383 7 1085050 1102810 CNV Gain Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463264 S 9 1 0 Samples from several populations that are part of the HapMap project. "" NA18517 nsv830878 7 1128925 1324820 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445838,nssv1445846,nssv1445840,nssv1445845,nssv1445844,nssv1445841,nssv1445843,nssv1445842,nssv1445848,nssv1445847 M 95 0 10 "" nsv521100 7 1201694 1325661 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697786 S 2026 0 1 "" nsv464247 7 1201694 1366899 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540191 S 1557 0 1 "" 1780862127_A nsv8029 7 1265358 1305512 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17143,nssv15606,nssv18000 M 31 1 2 Samples from several populations that are part of the HapMap project. "" NA10863,NA18504,NA19221 nsv366643 7 1302189 1302189 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv385221 M 24 "" nsv830879 7 1306463 1463188 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445856,nssv1445853,nssv1445868,nssv1445861,nssv1445855,nssv1445867,nssv1445854,nssv1445860,nssv1445857,nssv1445859,nssv1445852,nssv1445863,nssv1445866,nssv1445865,nssv1445864,nssv1445869,nssv1445870,nssv1445858,nssv1445849 M 95 17 2 "" nsv830880 7 1306463 1463188 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445871,nssv1445874,nssv1445872 M 95 0 3 "" nsv5615 7 1341434 1386085 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8334 S 9 0 1 "" NA12156 nsv482100 7 1355112 1369307 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558461 S 1 1 0 "" KB1 nsv464248 7 1425141 1615648 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540192 S 1557 1 0 "" 1780854436_A nsv8030 7 1448082 1451535 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14825 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA10847 nsv830881 7 1451208 1646381 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445876,nssv1445875 M 95 0 2 "" nsv520976 7 1524038 1530477 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697718 S 2026 0 1 "" nsv515897 7 1586439 1610877 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv663685,nssv692767,nssv665401,nssv656929,nssv673356,nssv665186,nssv694512 M 2026 7 0 "" nsv518875 7 1592420 1627504 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696333 S 2026 0 1 "" nsv830883 7 1609883 1782327 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445881,nssv1445880,nssv1445882,nssv1445879,nssv1445877,nssv1445878 M 95 0 6 "" nsv5616 7 1624074 1666117 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3499 S 9 0 1 "" NA12878 nsv509186 7 1643791 1689859 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620877 S 4 1 0 "" NA15510 nsv365724 7 1672931 1673110 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384302 M 24 "" nsv366131 7 1695962 1696051 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384709 M 24 "" nsv5617 7 1745086 1782948 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8335 S 9 0 1 "" NA12156 nsv830884 7 1760000 1884857 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445883,nssv1445885 M 95 0 2 "" nsv366600 7 1809239 1809239 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv385178 M 24 "" nsv366761 7 1809652 1809741 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv385339 M 24 "" dgv796n27 7 1812835 1888644 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv464251,nsv464249 M 1557 0 2 "" HGDP00433,HGDP00787 nsv830885 7 1845518 2048097 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445886 S 95 0 1 "" nsv365970 7 1849092 1849256 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384548 M 24 "" nsv464252 7 1884821 2006698 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540196 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00626 nsv464253 7 1913231 1961490 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540197 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00479 nsv830886 7 1958234 2150779 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445887 S 95 0 1 "" nsv464254 7 1979150 2026227 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540198 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00470 nsv365745 7 2023282 2023282 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384323 M 24 "" dgv227n6 7 2190342 2190914 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv366183,nsv366658 M 24 "" nsv366196 7 2190686 2191127 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384774 M 24 "" nsv366546 7 2306897 2306981 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv385124 M 24 "" nsv830887 7 2320124 2434271 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445888 S 95 0 1 "" dgv401n21 7 2413382 2526908 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv517403,nsv518027 M 2026 0 5 "" nsv5618 7 2439831 2470473 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6112 S 9 1 0 "" NA12156 nsv464257 7 2442828 2518365 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540199 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00852 nsv464258 7 2478507 2518365 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540200 S 1557 0 1 "" NINDS_111 nsv526132 7 2678169 2741602 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702386 S 2026 0 1 "" nsv464259 7 2693308 2710691 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540201 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00407 nsv528122 7 2728338 2750008 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704666 S 2026 0 1 "" nsv464260 7 2739379 3088813 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540202 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01333 nsv366076 7 2785337 2785337 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384654 M 24 "" nsv5619 7 2864413 2897827 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8337 S 9 1 0 "" NA12156 nsv525825 7 2891539 2893064 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702014 S 2026 0 1 "" nsv464262 7 2907834 2929054 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540204 S 1557 0 1 "" 1780846320_A nsv516098 7 2909011 2910918 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv680311,nssv666185,nssv686254,nssv689527,nssv668223,nssv691859,nssv673214,nssv674578,nssv691815,nssv674427,nssv689050,nssv671793,nssv681862,nssv673498,nssv657104,nssv687602,nssv686193 M 2026 0 17 "" nsv464263 7 2924418 2942735 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540205 S 1557 0 1 "" NINDS_22 nsv464264 7 2967397 3122866 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540206 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01166 nsv518337 7 2969574 3013342 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695766 S 2026 0 1 "" nsv525011 7 2969574 3037969 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701048 S 2026 1 0 "" nsv518354 7 2994231 3059666 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694228 S 2026 0 1 "" nsv522584 7 3037969 3092640 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705971 S 2026 0 1 "" nsv464267 7 3045239 3093413 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540207 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00056 dgv2046e1 7 3059866 3333470 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv566,essv10425,essv11836 M 271 0 0 "" NA19221,NA19222 essv7993 7 3132732 3228490 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19221 nsv464268 7 3155030 3187108 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540208 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00778 nsv519027 7 3155030 3207516 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696496 S 2026 0 1 "" nsv437530 7 3156844 3218552 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467411 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19221 essv14000 7 3158078 3224379 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19222 nsv8031 7 3165205 3243520 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14512,nssv18030 M 31 1 1 Samples from several populations that are part of the HapMap project. "" NA18942,NA19221 nsv437980 7 3165767 3200255 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv468893,nssv468894 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA19221,NA19222 nsv464269 7 3173346 3245962 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540209 S 1557 0 1 "" 1780854462_A nsv524581 7 3180809 3182230 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700538 S 2026 0 1 "" nsv510063 7 3186107 3192107 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622131 S 4 0 1 "" NA10860 nsv519151 7 3186979 3233239 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696628 S 2026 0 1 "" nsv442025 7 3207517 3212464 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv2047e1 7 3217427 3233596 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1554,essv3670 M 271 0 0 "" NA18943,NA19012 nsv818473 7 3218552 3238137 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417437 S 112 1 0 "" NA18952 nsv528715 7 3224492 3371822 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705365 S 2026 0 1 "" nsv464270 7 3264106 3354598 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540210 S 1557 0 1 "" 1780862303_A nsv366234 7 3293219 3293283 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384812 M 24 "" nsv464271 7 3329373 3378581 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540211 S 1557 0 1 "" NINDS_209 nsv830888 7 3350455 3549517 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445889 S 95 1 0 "" essv18811 7 3375589 3387478 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12248 dgv2048e1 7 3375589 3403590 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1350,essv25166,essv18580 M 271 0 0 "" NA10851,NA11839 dgv2049e1 7 3382736 3387478 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv21090,essv18678 M 271 0 0 "" NA10854,NA12056 nsv517279 7 3382953 3391384 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv660967,nssv652733,nssv690840,nssv670896,nssv654194,nssv661619,nssv685467,nssv677972,nssv652750,nssv681108,nssv693618,nssv651921,nssv657089,nssv673457,nssv656557,nssv698462,nssv676881,nssv675481,nssv681050 M 2026 0 19 "" nsv818474 7 3382953 3391384 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416245,nssv1416244 M 112 0 2 "" NA10851,NA12056 nsv442026 7 3383084 3391602 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv8032 7 3383451 3395615 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13811,nssv17173,nssv15636,nssv15007,nssv18060,nssv16782,nssv15075,nssv17543,nssv14897,nssv15025,nssv14260,nssv14855,nssv17894,nssv15453,nssv15298,nssv15961,nssv16148,nssv14966,nssv14724,nssv17217,nssv15969,nssv13999,nssv15454,nssv15466,nssv14542,nssv17211,nssv14990,nssv15318,nssv15659,nssv14672 M 31 30 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10847,NA10863,NA11830,NA12155,NA12740,NA12802,NA12872,NA18502,NA18504,NA18517,NA18537,NA18552,NA18563,NA18564,NA18572,NA18853,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19144,NA19173,NA19221,NA19240 nsv464273 7 3384156 3391384 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540213 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00323 nsv525399 7 3492794 3495674 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701522 S 2026 0 1 "" nsv521103 7 3634077 3642029 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv691173,nssv682335,nssv705792 M 2026 3 0 "" nsv5621 7 3656205 3667636 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv609 S 9 1 0 "" NA19240 nsv519403 7 3706163 3712296 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv655980,nssv672165 M 2026 0 2 "" nsv518377 7 3712296 3751583 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695805 S 2026 0 1 "" dgv797n27 7 3728757 4386848 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv464274,nsv464275,nsv464278,nsv464276,nsv464277 M 1557 5 0 "" HGDP01001,HGDP01003,HGDP01013,HGDP01014,HGDP01018 nsv509187 7 3774366 3806396 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620878 S 4 1 0 "" NA15510 nsv5622 7 3777654 3808977 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8338 S 9 1 0 "" NA12156 nsv527624 7 3800777 4197295 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704091 S 2026 1 0 "" nsv523815 7 3828014 3862117 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699645 S 2026 1 0 "" nsv518299 7 3889906 4059838 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695730 S 2026 0 1 "" nsv515665 7 3929742 3943971 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv664294,nssv687916 M 2026 0 2 "" nsv518625 7 3987966 3996893 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696074 S 2026 0 1 "" nsv520034 7 4009164 4011042 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697188 S 2026 0 1 "" nsv365802 7 4017890 4017890 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384380 M 24 "" nsv517001 7 4020738 4021922 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv679101,nssv674810,nssv656828,nssv667585,nssv653587,nssv653176,nssv677036,nssv676969,nssv693446,nssv685360,nssv677758 M 2026 0 11 "" nsv366864 7 4029834 4029935 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv385442 M 24 "" nsv464279 7 4066765 4172984 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540219 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00543 nsv517675 7 4066765 4194857 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv679744,nssv673809,nssv669204,nssv670109,nssv671159,nssv659546,nssv690420,nssv671729,nssv705908,nssv672337,nssv684657,nssv690745,nssv668065,nssv687462,nssv693175,nssv698108,nssv692567,nssv652790,nssv667162,nssv691403,nssv660423,nssv655575,nssv662287,nssv705089,nssv691131 M 2026 5 20 "" nsv5623 7 4068146 4077116 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8339 S 9 0 1 "" NA12156 nsv522909 7 4097971 4257098 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698568 S 2026 1 0 "" essv6454 7 4112654 4174369 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18637 esv933 7 4112654 4212478 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 "" nsv464280 7 4140748 4157474 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540220 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00964 nsv464281 7 4140748 4252381 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540221 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00740 nsv464282 7 4140941 4304181 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540222 S 1557 1 0 "" 1780854023_A esv34380 7 4148940 4158100 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6979836,essv6979835 M 771 1 0 "" NA18637 essv8709 7 4172052 4212478 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19200 nsv464285 7 4186554 4238439 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540224 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01301 nsv5624 7 4189109 4222871 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2751 S 9 1 0 "" NA18555 nsv441797 7 4190189 4192068 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" esv34870 7 4190210 4191960 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6980886,essv6980887 M 771 0 1 "" NA19140 nsv464286 7 4209042 4381415 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540225 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00678 esv2752157 7 4251233 4418630 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6984101,essv6984100,essv6987488 M 771 1 0 "" BEC_774 nsv524765 7 4252381 4256157 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700756 S 2026 0 1 "" nsv464287 7 4268242 4419491 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540226 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01162 nsv522007 7 4276630 4363053 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694118 S 2026 0 1 "" dgv2050e1 7 4365856 4519892 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv20100,esv464,essv14063 M 271 0 0 "" NA07048,NA18861 nsv464288 7 4381415 4442377 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540227 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00127 nsv291 7 4391472 4414510 CNV Loss Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv291 S 1 0 1 "" NA15510 nsv5625 7 4391472 4439204 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv11141,nssv6113,nssv3500 M 9 0 3 "" NA12156,NA12878,NA15510 nsv508442 7 4396505 4542869 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618803,nssv619986,nssv622567 M 4 0 3 "" NA10860,NA15510,NA18994 nsv464289 7 4419491 4432565 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540228 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01029 nsv8033 7 4575528 4859838 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15991 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19240 nsv366495 7 4580997 4581316 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv385073 M 24 "" nsv482101 7 4588505 4604638 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558462 S 1 1 0 "" KB1 nsv528748 7 4593822 4784234 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705409 S 2026 0 1 "" nsv5626 7 4600909 4632529 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10532 S 9 1 0 "" NA18956 nsv525289 7 4776614 4856982 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701394 S 2026 0 1 "" nsv524146 7 4906460 4907177 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700024 S 2026 1 0 "" nsv522076 7 4917346 4919560 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694847 S 2026 0 1 "" nsv523630 7 4917346 4971569 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699430 S 2026 0 1 "" nsv5627 7 5012619 5046824 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2752 S 9 1 0 "" NA18555 nsv830889 7 5021398 5200706 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445890 S 95 0 1 "" nsv8034 7 5031194 5191214 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18150 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19221 nsv366287 7 5108598 5108654 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384865 M 24 "" nsv510064 7 5201728 5207728 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621301 S 4 0 1 "" NA15510 nsv508443 7 5220524 5274363 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622568 S 4 0 1 "" NA18994 nsv526194 7 5225997 5365677 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702456 S 2026 1 0 "" nsv830890 7 5238174 5478399 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445892,nssv1445891,nssv1445893,nssv1445894,nssv1445896 M 95 0 5 "" nsv366056 7 5262093 5262290 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384634 M 24 "" nsv517558 7 5279740 5345373 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv668497,nssv652355,nssv671533,nssv683177,nssv676882,nssv687770 M 2026 0 6 "" nsv830891 7 5499542 5668701 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445897 S 95 1 0 "" dgv798n27 7 5552037 5664462 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv464293,nsv464294 M 1557 2 0 "" HGDP01366,HGDP01375 nsv464296 7 5565986 5623883 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540232 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00033 dgv402n21 7 5581200 5701197 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv521919,nsv521589 M 2026 0 2 "" nsv830892 7 5615285 5768730 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445898 S 95 0 1 "" nsv366446 7 5621819 5623135 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv385024 M 24 "" esv32641 7 5638062 5641029 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv95838 S 51 0 1 "" 21911 nsv8035 7 5654537 5661757 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15484,nssv13841 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA10839,NA12872 esv33300 7 5655299 5659935 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99246,essv97619,essv100544 M 51 0 3 "" 22275,22278,22298 nsv830894 7 5662899 5845456 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445899 S 95 0 1 "" nsv7392 7 5755555 6633745 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4963,nssv10533 M 9 0 0 "" NA18956,NA19129 nsv8037 7 5783317 5791471 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18180 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19221 esv1914954 7 5810563 6518007 OTHER Inversion Feuk_et_al_2005 16254605 FISH,PCR Not Provided essv4491061 S 18 0 0 "" nsv5628 7 5878703 5920389 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4964 S 9 0 1 "" NA19129 nsv510065 7 5917733 5923733 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618251,nssv624022 M 4 0 2 "" CHM,NA18994 nsv522155 7 5945895 5985896 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694928 S 2026 0 1 "" dgv403n21 7 5961024 5985896 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv522217,nsv527386 M 2026 0 2 "" nsv818475 7 5961024 5985896 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417743 S 112 0 1 "" NA19003 nsv5629 7 5991106 6036371 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4965 S 9 0 1 "" NA19129 nsv830895 7 6288021 6495332 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445900 S 95 0 1 "" nsv508444 7 6307350 6473767 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622569,nssv622570 M 4 0 1 "" NA18994 nsv515978 7 6308757 6472145 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv659442,nssv665570,nssv697664,nssv697665,nssv705793,nssv699517 M 2026 0 6 "" esv2752174 7 6460973 7547081 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6981522,essv6985594,essv6981520,essv6981521,essv6988413 M 771 1 0 "" BEC_289 nsv8038 7 6517957 6521351 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15348 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18564 esv32852 7 6519224 6520090 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv95066,essv92774,essv96317 M 51 0 3 "" 21721,21944,22371 nsv8039 7 6521351 6538126 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15328,nssv17241,nssv17573 M 31 3 0 Samples from several populations that are part of the HapMap project. "" NA18860,NA18972,NA19144 dgv2051e1 7 6537823 6750454 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv12139,esv1003 M 271 0 0 "" NA19173 esv33385 7 6557997 6613577 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100821 S 51 1 0 "" 21656 nsv8040 7 6559048 6568306 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18210 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19221 essv25135 7 6607117 6736929 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA10856 nsv441808 7 6627350 6637323 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv5630 7 6650942 6709371 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv610,nssv9707 M 9 0 2 "" NA18507,NA19240 nsv442027 7 6761068 6802025 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv464298 7 6813416 6914805 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540233 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01298 nsv529034 7 6813416 6914805 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705745 S 2026 0 1 "" nsv464299 7 6813416 6923824 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540234 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00462 nsv464300 7 6813416 7141939 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540235 S 1557 1 0 "" 1780862452_A nsv516271 7 6949986 6950945 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv667236,nssv656107 M 2026 0 2 "" nsv508445 7 6963758 7034338 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618804 S 4 0 1 "" NA10860 nsv519087 7 6970088 6974121 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696561 S 2026 0 1 "" dgv2052e1 7 6983151 7267141 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv553,essv21209 M 271 0 0 "" NA11830 nsv8041 7 7001344 7003702 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16812 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18502 nsv464301 7 7026015 7215409 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540236 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00254 nsv469770 7 7034654 7227061 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649791 M 265 0 2 Samples from several populations that are part of the HapMap project. "" essv19077 7 7053302 7117220 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA11830 nsv8042 7 7064378 7102081 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15037 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA11830 nsv523128 7 7065698 7091200 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698831 S 2026 0 1 "" nsv525648 7 7066132 7074163 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701802 S 2026 0 1 "" dgv2053e1 7 7074349 7267141 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv9978,essv16157 M 271 0 0 "" NA19099,NA19100 dgv2054e1 7 7090455 7215015 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv12100,essv14237 M 271 0 0 "" NA19099,NA19100 nsv437531 7 7096148 7215422 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467412 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19100 nsv520903 7 7102015 7103821 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv677290,nssv684658,nssv681863,nssv689346 M 2026 0 4 "" nsv522393 7 7102015 7200775 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695173 S 2026 0 1 "" nsv464302 7 7103862 7109534 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540237 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00821 dgv221e55 7 7117220 7200684 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv34328,esv34490 M 771 0 2 "" NA19099,NA19100 nsv437981 7 7123923 7128355 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv468895,nssv468896 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA19099,NA19100 nsv366841 7 7315568 7315867 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv385419 M 24 "" nsv527573 7 7344199 7345455 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704034 S 2026 0 1 "" nsv8043 7 7362435 7636042 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17603 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18972 esv2752177 7 7502487 7950929 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6986100,essv6982199,essv6982201,essv6982200 M 771 1 0 "" BEC_401 nsv818476 7 7547924 7552564 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417875 S 112 1 0 "" NA18852 nsv523479 7 7594834 7683139 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699243 S 2026 1 0 "" nsv365823 7 7609140 7610562 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384401 M 24 "" nsv523540 7 7622787 7626604 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699317 S 2026 0 1 "" dgv128n17 7 7632488 7653462 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437533,nsv437532 M 60 0 2 "" NA18506,NA18857 nsv518177 7 7634897 7641853 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695597 S 2026 0 1 "" nsv464304 7 7687059 7743800 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540238 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01177 nsv523784 7 7697888 7698037 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699609 S 2026 0 1 "" nsv525502 7 7711836 7769830 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701634 S 2026 0 1 "" esv32534 7 7738559 7741746 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99972 S 51 0 1 "" 22086 esv32555 7 7760184 7761472 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99760 S 51 0 1 "" 22086 nsv5633 7 7826866 7833111 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv611 S 9 1 0 "" NA19240 nsv518779 7 7828904 7850599 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696233 S 2026 0 1 "" nsv519058 7 7867844 7889034 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696529 S 2026 0 1 "" nsv464305 7 7952895 8297947 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540239 S 1557 1 0 "" 1780862599_A nsv442028 7 8003831 8009147 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv528572 7 8006882 8007611 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705191 S 2026 0 1 "" nsv464308 7 8061945 8727098 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540241 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01104 nsv5634 7 8070422 8095323 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4966 S 9 1 0 "" NA19129 nsv464309 7 8110672 8161740 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540242 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00872 nsv509188 7 8134090 8146007 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618063 S 4 1 0 "" CHM nsv519059 7 8177388 8196348 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696530 S 2026 0 1 "" nsv830896 7 8217831 8373718 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445901 S 95 1 0 "" nsv517461 7 8237809 8238214 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv692303,nssv674287,nssv655343,nssv668708,nssv667971,nssv652088,nssv690378,nssv693682,nssv655924,nssv683033,nssv690023 M 2026 0 11 "" nsv818477 7 8237809 8248018 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418378,nssv1418377 M 112 0 2 "" NA10847,NA12146 nsv830897 7 8252005 8458673 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445902 S 95 1 0 "" nsv519262 7 8396327 8396954 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696754 S 2026 0 1 "" nsv518729 7 8513480 8947845 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696179 S 2026 1 0 "" nsv464310 7 8515721 8534216 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540243 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01408 nsv519648 7 8534216 8537605 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696972 S 2026 0 1 "" nsv520962 7 8534216 8545390 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697710 S 2026 0 1 "" esv2422215 7 8545117 8638661 CNV Deletion Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161392 S 181 0 1 "" ND01588 nsv518400 7 8574210 8575673 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695830 S 2026 0 1 "" nsv516028 7 8595074 8595348 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv686118,nssv665813 M 2026 0 2 "" dgv799n27 7 8595074 8640790 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv464325,nsv464327,nsv464313,nsv464326,nsv464314 M 1557 0 5 "" 1780862301_A,1782681110_A,HGDP00388,HGDP00698,NINDS_91 dgv2055e1 7 8597194 8657317 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1017,essv23289 M 271 0 0 "" NA12006 nsv464315 7 8604338 8617688 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540246 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00624 dgv800n27 7 8604338 8632856 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv464329,nsv464316,nsv464321,nsv464332,nsv464319,nsv464323,nsv464324,nsv464331,nsv464320,nsv464330,nsv464318,nsv464322 M 1557 0 12 "" 1780854525_A,HGDP00025,HGDP00139,HGDP00226,HGDP00364,HGDP00644,HGDP00674,HGDP00675,HGDP00746,HGDP01282,NINDS_228,NINDS_31 nsv515520 7 8604338 8632856 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv658526,nssv660461,nssv662868,nssv682734,nssv692478,nssv686011,nssv660405,nssv663687,nssv685801,nssv687830,nssv699385,nssv690539,nssv693523,nssv683699,nssv684341,nssv691799,nssv692014,nssv684847,nssv670639,nssv683112,nssv653444,nssv686268,nssv693988 M 2026 0 23 "" esv33738 7 8610746 8636637 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100969 S 51 0 1 "" 21693 nsv464333 7 8611083 8674516 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540264 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00776 dgv801n27 7 8615224 8632856 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv464336,nsv464334,nsv464335,nsv464338,nsv464337 M 1557 0 5 "" HGDP00019,HGDP00052,HGDP00127,HGDP00177,HGDP00412 nsv464340 7 8619297 8640790 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540271 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00169 nsv5635 7 8644267 8673887 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2753,nssv6114,nssv10534 M 9 3 0 "" NA12156,NA18555,NA18956 nsv527733 7 8645967 8650496 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704216 S 2026 0 1 "" nsv509189 7 8657597 8679438 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623504 S 4 1 0 "" NA18994 nsv830898 7 8680846 8823645 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445903 S 95 0 1 "" nsv521591 7 8693227 8748052 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698208 S 2026 1 0 "" nsv464341 7 8707857 8772380 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540272 S 1557 0 1 "" NINDS_21 nsv464342 7 8721673 8783476 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540273 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01225 nsv523286 7 8761075 8772977 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699025 S 2026 0 1 "" nsv521202 7 8766124 8772977 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697842 S 2026 0 1 "" nsv520708 7 8772321 8772977 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv691341,nssv674380,nssv683489 M 2026 0 3 "" nsv521592 7 8778372 8831205 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698209 S 2026 1 0 "" nsv518115 7 8780136 8782521 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695529 S 2026 0 1 "" nsv365510 7 8804783 8804861 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384088 M 24 "" nsv528544 7 8830923 9009265 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705156 S 2026 0 1 "" nsv521383 7 8845625 8861221 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697993 S 2026 0 1 "" dgv2056e1 7 8846889 9015089 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv18626,essv23691,esv766 M 271 0 0 "" NA10863,NA12234 nsv5636 7 8848504 8882250 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10535,nssv4967,nssv3502,nssv6115 M 9 4 0 "" NA12156,NA12878,NA18956,NA19129 dgv404n21 7 8858099 8951616 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv528175,nsv517538 M 2026 0 4 "" nsv519910 7 8861221 8864869 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697119 S 2026 0 1 "" nsv509190 7 8861837 8876145 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623505,nssv619477 M 4 2 0 "" NA10860,NA18994 nsv830899 7 8875594 9039667 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445913,nssv1445905,nssv1445904,nssv1445912,nssv1445908,nssv1445907,nssv1445911,nssv1445910,nssv1445909 M 95 9 0 "" dgv222e55 7 8890532 9006295 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv2752189,esv34744 M 771 0 2 "" BEC_821,NA10863 dgv2057e1 7 8893236 9015089 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv20977,essv19853 M 271 0 0 "" NA10863,NA12234 nsv442029 7 8900413 9003125 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv8044 7 8901171 9004561 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15020,nssv15666 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA10863,NA18853 nsv464344 7 8901481 8992197 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540274 S 1557 0 1 "" 1780862176_A nsv818479 7 8901481 8996708 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417605,nssv1417594 M 112 0 2 "" NA10863,NA12234 dgv223e55 7 8913477 8987343 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv2752190,esv35139 M 771 0 2 "" BEC_502,NA12234 nsv464345 7 8927542 8951616 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540275 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00875 nsv510066 7 8990560 8996560 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621302 S 4 0 1 "" NA15510 nsv8045 7 9014883 9017114 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15999 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA12740 nsv818480 7 9031236 9047733 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417876 S 112 1 0 "" NA18852 nsv523576 7 9072659 9074956 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699361 S 2026 1 0 "" nsv464346 7 9150295 9189515 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540276 S 1557 0 1 "" NINDS_234 nsv524824 7 9218677 9231735 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700820 S 2026 0 1 "" nsv524752 7 9264031 9308036 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700743 S 2026 1 0 "" dgv802n27 7 9264031 9315239 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv464347,nsv464348 M 1557 2 0 "" 1780862226_A,1782681313_A nsv521354 7 9295174 9310441 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697965 S 2026 0 1 "" nsv525708 7 9310441 9336151 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701870 S 2026 0 1 "" nsv464349 7 9325603 9346142 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540279 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00891 nsv516398 7 9326455 9345338 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv693796,nssv658483,nssv668028 M 2026 0 3 "" dgv803n27 7 9370304 9400397 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv464351,nsv464352 M 1557 0 2 "" 1798860071_A,HGDP00647 nsv528412 7 9387801 9558493 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705004 S 2026 0 1 "" nsv516131 7 9389383 9389648 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv659726,nssv666405 M 2026 0 2 "" nsv510067 7 9433343 9439343 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621303 S 4 0 1 "" NA15510 nsv830900 7 9488845 9655182 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445914 S 95 1 0 "" nsv464354 7 9530995 9821771 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540283 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00151 esv34783 7 9564997 9689134 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6979432,essv6979433,essv6986865,essv6986866,essv6979431 M 771 1 0 "" NA18552 nsv8046 7 9573898 9683382 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15358,nssv15496 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA18552,NA19144 dgv2058e1 7 9578732 9699463 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv5984,esv1432 M 271 0 0 "" NA18552 nsv518054 7 9580005 9581705 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695464 S 2026 0 1 "" nsv528694 7 9581705 9679950 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705339 S 2026 1 0 "" nsv521473 7 9620536 9730798 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698084 S 2026 1 0 "" nsv527635 7 9643437 9661553 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704104 S 2026 1 0 "" nsv529035 7 9666984 9734737 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705746 S 2026 1 0 "" nsv464355 7 9672620 9734737 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540284 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00462 nsv522545 7 9686892 9767637 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705925 S 2026 0 1 "" nsv507374 7 9712946 9718946 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622997,nssv621867,nssv620365 M 4 3 0 "" NA10860,NA15510,NA18994 nsv521630 7 9728990 9978154 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698249 S 2026 0 1 "" nsv464356 7 9772194 9821771 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540285 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00918 nsv5637 7 9798061 9841694 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8340 S 9 0 1 "" NA12156 dgv804n27 7 9821185 9861846 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv464358,nsv464357 M 1557 0 2 "" 1780862576_A,1782681096_A nsv464359 7 9877397 9913729 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540288 S 1557 0 1 "" NINDS_178 nsv464360 7 9919893 9954431 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540289 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01050 dgv805n27 7 9934190 9995243 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv464363,nsv464362 M 1557 0 2 "" HGDP01041,HGDP01044 nsv518653 7 10052046 10052726 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696102 S 2026 1 0 "" nsv521555 7 10092242 10093046 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698170 S 2026 0 1 "" nsv508446 7 10252761 10322182 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618805 S 4 0 1 "" NA10860 nsv365516 7 10277540 10279373 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384094 M 24 "" nsv523320 7 10291849 10293127 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699062 S 2026 0 1 "" nsv528047 7 10291849 10355355 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704579 S 2026 0 1 "" nsv518683 7 10299166 10310096 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696132 S 2026 0 1 "" nsv520781 7 10302571 10332019 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv680329,nssv675382 M 2026 0 2 "" nsv521129 7 10310096 10419132 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694418 S 2026 0 1 "" nsv527986 7 10327990 10391029 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704505 S 2026 1 0 "" nsv519923 7 10568305 10571732 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv659512,nssv690375,nssv661995,nssv672905 M 2026 0 4 "" esv2752139 7 10571732 10727459 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6984840,essv6990030,essv6984841 M 771 0 1 "" SPC_183 esv2752140 7 10590300 10802988 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6981995,essv6981996,essv6981997,essv6987101,essv6987100 M 771 1 0 "" BEC_510 nsv524017 7 10639927 10649134 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699877 S 2026 0 1 "" nsv464364 7 10677992 10762106 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540293 S 1557 0 1 "" NINDS_179 nsv830901 7 10866695 11045459 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445915 S 95 1 0 "" dgv405n21 7 10971433 11249059 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv518180,nsv523279 M 2026 2 0 "" nsv526652 7 10987480 10990022 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702979 S 2026 0 1 "" nsv517952 7 11011267 11019393 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694185 S 2026 0 1 "" nsv510068 7 11054765 11060765 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618252 S 4 0 1 "" CHM nsv437534 7 11068131 11092695 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467415 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19161 nsv5638 7 11080374 11114069 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8341 S 9 0 1 "" NA12156 dgv2059e1 7 11081247 11125514 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1364,essv16 M 271 0 0 "" NA18945 nsv522683 7 11107667 11108408 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv706091 S 2026 0 1 "" nsv830902 7 11109767 11297144 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445916 S 95 1 0 "" nsv524685 7 11154698 11155167 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700656 S 2026 0 1 "" nsv830903 7 11158197 11359616 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445918 S 95 1 0 "" nsv526631 7 11166374 11177234 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702953 S 2026 0 1 "" nsv525858 7 11240662 11249059 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702054 S 2026 0 1 "" nsv523264 7 11294782 11295765 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698998 S 2026 0 1 "" nsv464366 7 11295765 11376139 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540294 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00003 nsv527252 7 11317850 11320524 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703656 S 2026 0 1 "" nsv464367 7 11317850 11333602 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540295 S 1557 0 1 "" NINDS_212 nsv510069 7 11335137 11341137 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618253 S 4 0 1 "" CHM nsv510070 7 11498448 11504448 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624023 S 4 0 1 "" NA18994 nsv524308 7 11547040 11548141 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700209 S 2026 0 1 "" nsv525415 7 11564861 11568838 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701539 S 2026 0 1 "" nsv830905 7 11566753 11714834 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445919 S 95 0 1 "" nsv519418 7 11657922 11673719 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696843 S 2026 0 1 "" nsv464368 7 11657922 11693786 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540296 S 1557 0 1 "" 1780854464_A nsv517313 7 11694642 11695065 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv693443,nssv685259,nssv662500,nssv669076,nssv684875,nssv651685,nssv684581,nssv682274,nssv652437,nssv672460,nssv683697,nssv673354,nssv691276,nssv651710,nssv672832,nssv679530 M 2026 0 16 "" dgv2060e1 7 11700479 11882659 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2508,esv382 M 271 0 0 "" NA19003 nsv464369 7 11704807 11735360 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540297 S 1557 0 1 "" 1780854449_A nsv464370 7 11748797 11784037 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540298 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00469 nsv830906 7 11775004 11951109 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445920 S 95 1 0 "" nsv515497 7 11776656 11783194 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv667985,nssv664660,nssv656871,nssv666836,nssv660805,nssv672992,nssv669203,nssv692565,nssv666008,nssv677140,nssv657264,nssv683312,nssv680780,nssv672272,nssv662063,nssv665184,nssv660853,nssv657566,nssv652786,nssv675682,nssv658905,nssv677743,nssv692720,nssv666954,nssv676039,nssv655764,nssv669943,nssv687305,nssv673542,nssv674839,nssv660915,nssv681177,nssv651776,nssv664130,nssv693174,nssv657305,nssv695930 M 2026 0 37 "" nsv519162 7 11776656 11787501 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696644 S 2026 0 1 "" nsv818481 7 11776656 11797104 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416941,nssv1416942 M 112 0 2 "" NA19137,NA19138 nsv441821 7 11778212 11783011 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv522468 7 11783194 11787501 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705832 S 2026 0 1 "" nsv5639 7 11816641 11843258 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4968 S 9 1 0 "" NA19129 nsv518249 7 11833046 11834301 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695680 S 2026 0 1 "" nsv5640 7 11904213 11939607 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3503 S 9 1 0 "" NA12878 nsv518343 7 11937340 11943736 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695771 S 2026 1 0 "" nsv527333 7 11993064 11994001 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703758 S 2026 0 1 "" dgv228n6 7 12054944 12055273 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv365598,nsv366491 M 24 "" nsv526409 7 12116703 12117946 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702709 S 2026 0 1 "" nsv464371 7 12145041 12208011 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540299 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00165 nsv464374 7 12187965 12203855 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540301 S 1557 0 1 "" 1780862088_A nsv516511 7 12212912 12252824 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv672796,nssv668764 M 2026 0 2 "" dgv2061e1 7 12278853 12369775 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv14662,esv1218 M 271 0 0 "" NA19145 essv9855 7 12279972 12343617 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19144 nsv464377 7 12286042 12337368 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540302 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00875 nsv8048 7 12287700 12337976 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15055,nssv17271,nssv15388,nssv15050,nssv14927,nssv14885,nssv15689,nssv14996,nssv14814 M 31 7 2 Samples from several populations that are part of the HapMap project. "" NA10847,NA18563,NA18853,NA18860,NA18975,NA18980,NA19007,NA19144,NA19173 nsv519965 7 12289410 12337368 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv675455,nssv685738,nssv675490,nssv696207,nssv659725 M 2026 4 1 "" nsv818482 7 12289410 12337368 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418157,nssv1418158 M 112 2 0 "" NA19144,NA19145 nsv507375 7 12306042 12312042 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621868,nssv620366 M 4 2 0 "" NA10860,NA15510 nsv528031 7 12309576 12392004 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704562 S 2026 0 1 "" nsv464379 7 12345982 12392004 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540303 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01202 nsv521176 7 12405160 12405325 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv683814,nssv690022 M 2026 2 0 "" nsv527833 7 12405325 12417742 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704329 S 2026 0 1 "" nsv818483 7 12414442 12417742 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417877 S 112 1 0 "" NA18852 nsv524108 7 12416636 12417273 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699986 S 2026 0 1 "" dgv406n21 7 12416636 12417742 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv519504,nsv523581 M 2026 0 2 "" nsv520866 7 12416636 12419713 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697657 S 2026 0 1 "" nsv519573 7 12419663 12419713 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696928 S 2026 0 1 "" nsv830907 7 12434479 12591490 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445921 S 95 0 1 "" nsv830908 7 12468247 12643715 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445922 S 95 1 0 "" esv2422346 7 12512531 12656790 CNV Deletion Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161542 S 181 0 1 "" ND03836 nsv464380 7 12550548 12578240 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540304 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00909 nsv464381 7 12550548 12599638 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540305 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00906 nsv521756 7 12613330 12625364 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694523 S 2026 0 1 "" nsv464382 7 12680418 12745925 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540306 S 1557 0 1 "" NINDS_151 esv33888 7 12748455 12753121 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99967 S 51 0 1 "" 22086 nsv5641 7 12786024 12803498 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3504 S 9 0 1 "" NA12878 nsv818484 7 12794945 12800935 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416166,nssv1416165 M 112 0 2 "" NA12878,NA12891 esv33094 7 12797418 12800904 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99852 S 51 0 1 "" 22086 nsv517443 7 12797707 12800935 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv664598,nssv682458,nssv688409,nssv652125,nssv682994,nssv655979,nssv664585,nssv655372,nssv685173,nssv691718,nssv688755,nssv669816,nssv688916,nssv685546,nssv686690,nssv662866,nssv700069,nssv677955,nssv653440,nssv690316,nssv652034 M 2026 0 21 "" nsv437536 7 12873275 12925402 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467417 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18500 nsv8049 7 12876061 12904872 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16842 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18502 nsv516983 7 12876876 12897396 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv657327,nssv685388,nssv665882,nssv692180,nssv683313,nssv689947,nssv665977,nssv680524,nssv655573,nssv682814,nssv687537,nssv677110,nssv682685,nssv681091,nssv662827,nssv672273,nssv691491,nssv688179,nssv663506,nssv670380,nssv681178,nssv670261,nssv678023,nssv653552,nssv661751,nssv677757,nssv684582,nssv658698,nssv685887,nssv658134,nssv670493,nssv678739,nssv652788,nssv681349 M 2026 0 34 "" nsv437983 7 12877674 12885563 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv468898,nssv468899 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA18500,NA18502 nsv441826 7 12881308 12892259 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv464385 7 12964190 12986442 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540308 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01355 nsv464386 7 13049301 13089491 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540309 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01217 nsv519939 7 13078782 13080206 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697137 S 2026 0 1 "" nsv524094 7 13089651 13089930 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699968 S 2026 0 1 "" nsv366758 7 13143440 13143499 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv385336 M 24 "" nsv821652 7 13212182 14328128 CNV Loss Sebat_et_al_2004 15273396 ROMA Custom Nimblegen photoprint 85000 probe ROMA oligo array nssv1421196,nssv1421195 M 31 0 2 "" nsv8050 7 13358757 13365117 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15483 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA07048 dgv407n21 7 13414914 13456320 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv522998,nsv520006 M 2026 0 2 "" nsv8051 7 13418037 13421712 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14702 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA07029 nsv365477 7 13436430 13436695 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384055 M 24 "" nsv830909 7 13465569 13641534 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445923 S 95 1 0 "" nsv517571 7 13505137 13507525 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv652409,nssv705162,nssv682612,nssv686964,nssv690331,nssv680781,nssv652789 M 2026 1 6 "" nsv464387 7 13506770 13515566 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540310 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00011 dgv408n21 7 13517804 13534644 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv521886,nsv519178 M 2026 0 2 "" dgv409n21 7 13564503 13567443 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv528671,nsv527080 M 2026 0 2 "" nsv525915 7 13592542 13615038 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702119 S 2026 1 0 "" nsv519601 7 13593208 13630475 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv657010,nssv658236 M 2026 0 2 "" nsv464388 7 13601339 13642153 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540311 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00942 nsv510071 7 13643142 13649142 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624024 S 4 0 1 "" NA18994 nsv516692 7 13648362 13681067 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv661355,nssv670193 M 2026 0 2 "" nsv526824 7 13667516 13685657 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703180 S 2026 0 1 "" nsv5642 7 13769775 13803627 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2754 S 9 1 0 "" NA18555 nsv518149 7 13886743 13891589 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695570 S 2026 1 0 "" nsv818485 7 13917903 13921142 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417878 S 112 1 0 "" NA18852 nsv523217 7 13942792 13945894 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698939 S 2026 0 1 "" nsv8052 7 13986046 14003944 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16872 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18502 nsv8053 7 14023511 14025850 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15026,nssv14290,nssv15080,nssv15696,nssv15378,nssv15135,nssv14915,nssv17633 M 31 5 3 Samples from several populations that are part of the HapMap project. "" NA10847,NA10863,NA12802,NA18537,NA18564,NA18853,NA18972,NA19007 nsv8054 7 14067769 14072787 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17924,nssv17663 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA18517,NA18972 nsv518783 7 14367476 14369294 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696237 S 2026 0 1 "" dgv2062e1 7 14670117 15073026 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv864,essv19941 M 271 0 0 "" NA12813 nsv365967 7 14683660 14683977 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384545 M 24 "" nsv8055 7 14715539 14721804 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18240 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19221 nsv517876 7 14784064 14971829 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695283 S 2026 0 1 "" nsv830910 7 14784268 14985549 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445924 S 95 0 1 "" nsv522499 7 14824994 14921694 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705867 S 2026 0 1 "" nsv464390 7 14832512 14860839 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540312 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00611 nsv8056 7 14841514 14845624 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15085 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18980 essv23733 7 14845100 14945514 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12813 esv34790 7 14847800 14930400 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6989057,essv6988081,essv6978986 M 771 0 1 "" NA12813 nsv818486 7 14852231 14932723 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416070 S 112 0 1 "" NA12813 nsv8057 7 14860212 14868009 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16902,nssv16021,nssv17247 M 31 0 3 Samples from several populations that are part of the HapMap project. "" NA18502,NA19132,NA19240 nsv464391 7 14860839 14895191 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540313 S 1557 0 1 "" NINDS_45 nsv441839 7 14862518 14865373 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv523321 7 14881424 14887380 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699063 S 2026 0 1 "" nsv522976 7 14881424 15091713 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698646 S 2026 1 0 "" nsv5644 7 14892937 14927233 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv612 S 9 1 0 "" NA19240 nsv8059 7 14892978 14895441 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15056 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19007 nsv510072 7 14954590 14960590 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618254,nssv621304 M 4 0 2 "" CHM,NA15510 nsv8060 7 15002468 15010069 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14957,nssv17693,nssv15719 M 31 0 3 Samples from several populations that are part of the HapMap project. "" NA18563,NA18972,NA19173 nsv366752 7 15167169 15167330 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv385330 M 24 "" nsv517723 7 15170883 15176206 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv652991,nssv688411 M 2026 0 2 "" nsv524952 7 15176206 15197623 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700973 S 2026 0 1 "" nsv437537 7 15186814 15215870 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467418 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18500 nsv518175 7 15187974 15191139 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695596 S 2026 0 1 "" nsv524706 7 15189804 15191139 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700689 S 2026 0 1 "" dgv410n21 7 15276553 15321190 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv523674,nsv523691 M 2026 0 2 "" nsv523199 7 15355448 15815836 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698917 S 2026 1 0 "" nsv527015 7 15381275 15386465 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703390 S 2026 0 1 "" nsv464392 7 15415293 15427854 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540314 S 1557 0 1 "" 1780862194_A nsv830911 7 15439547 15590902 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445925 S 95 1 0 "" nsv524664 7 15531069 15542779 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700633 S 2026 1 0 "" nsv527639 7 15539834 15568807 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704108 S 2026 1 0 "" nsv520205 7 15737478 15748854 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697280 S 2026 0 1 "" esv34337 7 15789100 15801129 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6978756,essv6986697 M 771 1 0 "" NA12234 dgv2063e1 7 15789103 15801129 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv19839,esv1413 M 271 0 0 "" NA12234 nsv818487 7 15798580 15801238 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417616 S 112 1 0 "" NA12234 nsv517991 7 15815836 15877567 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695404 S 2026 0 1 "" dgv411n21 7 15819034 15858259 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv518740,nsv527277 M 2026 0 2 "" nsv366243 7 15945014 15947312 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384821 M 24 "" essv6089 7 16009402 16107468 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18621 dgv2064e1 7 16009402 16300630 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv7854,esv827,essv5307,essv4069,essv4808 M 271 0 0 "" NA18558,NA18563,NA18620,NA18635 esv34298 7 16024994 16097425 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6988239,essv6979755,essv6979756 M 771 0 1 "" NA18621 dgv2065e1 7 16119379 16185865 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv6207,essv7680,essv7253 M 271 0 0 "" NA18563,NA18620,NA18635 essv6861 7 16119379 16231714 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18558 nsv8061 7 16121759 16178535 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14987 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18563 nsv442031 7 16122083 16175354 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv818488 7 16123370 16174430 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417207 S 112 0 1 "" NA18558 nsv523384 7 16124099 16174430 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699133 S 2026 0 1 "" dgv224e55 7 16125085 16185865 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv34942,esv34248,esv34392,esv35018 M 771 0 4 "" NA18558,NA18563,NA18620,NA18635 nsv508447 7 16133854 16219293 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618806 S 4 0 1 "" NA10860 nsv464393 7 16135618 16170592 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540315 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01308 nsv464396 7 16154606 16174430 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540317 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00976 nsv5645 7 16171932 16205832 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8343 S 9 1 0 "" NA12156 nsv523408 7 16186721 16211597 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699159 S 2026 0 1 "" nsv517363 7 16211050 16215105 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv670989,nssv693445,nssv670973,nssv685215,nssv693585,nssv658393,nssv661088,nssv663686,nssv683477,nssv660139,nssv669984,nssv682970,nssv685498,nssv688234,nssv674693,nssv668864,nssv680725,nssv656850,nssv670017,nssv688093,nssv669165,nssv662954,nssv692695,nssv665883,nssv662723,nssv679511,nssv683657,nssv660220,nssv658482,nssv688674,nssv654509,nssv672195,nssv666530,nssv684606,nssv669817,nssv658339,nssv651895,nssv674183,nssv673727,nssv657011,nssv652263,nssv690139,nssv661618,nssv686770,nssv669585,nssv665027,nssv672777,nssv678608,nssv687419,nssv675372,nssv668690,nssv670495,nssv676091,nssv692859,nssv682247,nssv684375,nssv659441,nssv654974,nssv692270,nssv679308,nssv681236,nssv683248,nssv665139,nssv682613,nssv653875,nssv669631,nssv670082,nssv661287,nssv686692,nssv665569,nssv660699,nssv669944,nssv664118,nssv664293,nssv681844,nssv660190,nssv671407,nssv663744,nssv693883,nssv655126,nssv682894,nssv660068,nssv684893,nssv670867,nssv685318,nssv656220,nssv657088,nssv671881,nssv658728,nssv677035 M 2026 0 90 "" nsv520493 7 16355130 16357710 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697453 S 2026 0 1 "" nsv830912 7 16396436 16565214 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445926 S 95 1 0 "" nsv522819 7 16412855 16428627 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698467 S 2026 0 1 "" nsv437016 7 16471507 16477431 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv466897 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA12801 nsv517565 7 16473350 16474038 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv654553,nssv652374,nssv674208,nssv666683,nssv690707,nssv658394,nssv677708 M 2026 0 7 "" nsv520554 7 16568354 16568804 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv678310,nssv672488 M 2026 0 2 "" esv2752152 7 16636967 16719465 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6989499,essv6985764 M 771 0 1 "" SPC_42 nsv522109 7 16681785 16719726 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694881 S 2026 1 0 "" nsv464398 7 16688768 17188024 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540318 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01376 nsv522500 7 16694574 16695489 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705868 S 2026 0 1 "" nsv526959 7 16695489 16695606 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703331 S 2026 0 1 "" dgv2066e1 7 16783293 17304719 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv852,essv1413 M 271 0 0 "" NA19007 dgv2067e1 7 16856134 16878340 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2940,essv2117 M 271 0 0 "" NA18959,NA18972 nsv464399 7 16859179 17528824 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540319 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01240 nsv8062 7 16863263 16871031 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17723 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18972 nsv442032 7 16867066 16869566 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv8063 7 16871031 16874726 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16029 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA12740 nsv8064 7 16886185 17217283 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15086 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19007 essv2917 7 16903042 17218573 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19007 esv34717 7 16905175 17204000 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6978366,essv6978367,essv6978368,essv6978369,essv6978370 M 771 1 0 "" NA19007 nsv528987 7 16906754 16944978 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705687 S 2026 0 1 "" nsv522330 7 16944978 16959353 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695110 S 2026 1 0 "" nsv5646 7 16963004 16995524 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10536 S 9 1 0 "" NA18956 nsv516567 7 16992040 16993128 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv679100,nssv670573,nssv669350,nssv676396,nssv672957,nssv669224,nssv689637,nssv656132,nssv673693,nssv670151,nssv684943,nssv676600,nssv693118,nssv680252,nssv659257 M 2026 0 15 "" esv2422294 7 17014195 17265083 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161316 S 181 1 0 "" ND04531 esv32689 7 17099343 17099545 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv95770,essv99176,essv99514,essv96364 M 51 4 0 "" 21911,22275,22335,22371 dgv806n27 7 17173098 17402791 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv464401,nsv464400 M 1557 2 0 "" 1782681286_A,NINDS_165 nsv515531 7 17173098 17402791 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv661455,nssv693246,nssv688497,nssv668707,nssv663839,nssv660422,nssv688248 M 2026 2 5 "" essv5687 7 17273084 17297879 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18605 nsv464402 7 17298324 17336522 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540322 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01273 nsv5647 7 17495345 17530121 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3505 S 9 1 0 "" NA12878 nsv830913 7 17621720 17807458 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445929,nssv1445927,nssv1445930 M 95 1 2 "" nsv365749 7 17742941 17743006 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384327 M 24 "" dgv412n21 7 17852331 17869061 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv525410,nsv519608 M 2026 0 2 "" nsv818490 7 17866598 17867527 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418465 S 112 0 1 "" NA19193 nsv366882 7 17917947 17918189 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv385460 M 24 "" nsv830914 7 17969970 18149287 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445931 S 95 1 0 "" nsv830916 7 18027539 18206589 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445932 S 95 1 0 "" esv32771 7 18106688 18110916 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99729 S 51 1 0 "" 22217 nsv5648 7 18355620 18389159 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3506 S 9 1 0 "" NA12878 nsv516893 7 18374605 18387759 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv679032,nssv654738 M 2026 0 2 "" nsv830917 7 18385676 18590952 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445933 S 95 1 0 "" dgv2068e1 7 18540954 18574580 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1342,essv1538 M 271 0 0 "" NA19012 nsv8065 7 18626529 18630381 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16051 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19240 nsv528759 7 18654749 18655443 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705421 S 2026 0 1 "" nsv523497 7 18669251 18732621 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699266 S 2026 0 1 "" nsv523468 7 18709007 18712440 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699227 S 2026 0 1 "" nsv519024 7 18877166 18907359 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696493 S 2026 0 1 "" nsv441853 7 18951972 18953940 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv521853 7 19100328 19133022 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694627 S 2026 1 0 "" dgv2069e1 7 19169386 19394202 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv23270,essv22574,essv21628,essv20149,esv767 M 271 0 0 "" NA07345,NA07348 nsv442033 7 19185839 19318551 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv818491 7 19186511 19321189 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418002,nssv1418003 M 112 2 0 "" NA07345,NA07348 esv34500 7 19188783 19347003 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6990472,essv6980356,essv6980357,essv6980358,essv6987061 M 771 1 0 "" NA07345 nsv523813 7 19207042 19209186 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699643 S 2026 1 0 "" nsv464403 7 19225889 19289732 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540323 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00640 nsv517176 7 19237267 19241498 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv666468,nssv672118,nssv667329,nssv653931 M 2026 0 4 "" nsv510955 7 19253281 19338383 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621596,nssv624313 M 4 0 0 "" NA15510,NA18994 nsv510073 7 19268990 19274990 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618255,nssv622132 M 4 0 2 "" CHM,NA10860 esv2752153 7 19282242 19393891 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6985715,essv6990128,essv6990129,essv6985714 M 771 0 1 "" SPC_36 nsv5649 7 19283479 19293886 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3507 S 9 1 0 "" NA12878 nsv509192 7 19291248 19338383 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619479 S 4 1 0 "" NA10860 nsv8066 7 19307004 19312202 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15526 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18552 nsv8067 7 19321444 19323397 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15514 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA10839 nsv8068 7 19392086 19455661 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17277,nssv16081,nssv15749,nssv15544,nssv17301 M 31 0 5 Samples from several populations that are part of the HapMap project. "" NA10839,NA18860,NA19132,NA19173,NA19240 nsv519113 7 19480212 19489731 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696589 S 2026 0 1 "" nsv524807 7 19487396 19577165 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700799 S 2026 1 0 "" nsv830918 7 19520914 19687767 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445934 S 95 0 1 "" nsv519430 7 19628674 19635461 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv691319,nssv656176 M 2026 0 2 "" nsv527500 7 19640217 19646439 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703950 S 2026 0 1 "" nsv830919 7 19856139 20027096 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445935 S 95 0 1 "" nsv527794 7 19856234 19900801 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704286 S 2026 0 1 "" nsv522363 7 19859235 19862228 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695143 S 2026 0 1 "" dgv413n21 7 19877464 19878148 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv525144,nsv527559 M 2026 0 2 "" nsv520265 7 19996385 19998987 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv681385,nssv662258,nssv689791,nssv683352 M 2026 0 4 "" nsv5650 7 20025314 20058643 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3508 S 9 1 0 "" NA12878 nsv464404 7 20040010 20073656 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540324 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00664 nsv507376 7 20121654 20127654 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621869,nssv622998,nssv620367,nssv617731 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 dgv230n6 7 20192158 20193528 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv365323,nsv365333 M 24 "" nsv523878 7 20212593 20213705 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699720 S 2026 0 1 "" nsv365438 7 20214991 20217491 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384016 M 24 "" dgv231n6 7 20222639 20222738 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv365352,nsv365649 M 24 "" nsv519501 7 20243515 20249434 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696887 S 2026 0 1 "" nsv522999 7 20485735 20496332 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698671 S 2026 0 1 "" nsv522599 7 20517803 20520315 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705990 S 2026 0 1 "" nsv5651 7 20519316 20535782 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10537 S 9 0 1 "" NA18956 nsv517268 7 20520315 20524089 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv662668,nssv664418,nssv694045,nssv658729,nssv688648,nssv654789,nssv679147,nssv670812,nssv652376,nssv655574,nssv669225,nssv667188,nssv651999,nssv672939,nssv678831,nssv652947,nssv662286,nssv663931,nssv690708,nssv676968,nssv682471,nssv677858,nssv675976,nssv655102,nssv690904,nssv660700,nssv658662,nssv693556,nssv666059,nssv688114,nssv681790,nssv654168,nssv665324,nssv690418,nssv688412,nssv671973,nssv652035,nssv691719,nssv675955,nssv672669,nssv659544,nssv677004,nssv670108,nssv651958,nssv687486,nssv655342,nssv671758 M 2026 0 47 "" nsv524866 7 20522530 20527722 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700871 S 2026 0 1 "" nsv5652 7 20600858 20634357 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4971 S 9 1 0 "" NA19129 nsv830920 7 20787775 20974820 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445936 S 95 1 0 "" nsv365441 7 20841193 20842341 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384019 M 24 "" nsv464407 7 20895337 20935266 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540326 S 1557 0 1 "" 1780862082_A nsv525386 7 20917238 20918115 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701508 S 2026 1 0 "" nsv518461 7 20917238 20920918 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695898 S 2026 1 0 "" nsv5653 7 21152774 21187674 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv613 S 9 1 0 "" NA19240 nsv516499 7 21200858 21205049 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv668691,nssv655944 M 2026 2 0 "" nsv522356 7 21200858 21212431 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695136 S 2026 1 0 "" nsv830921 7 21262340 21461256 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445953,nssv1445951,nssv1445952,nssv1445955,nssv1445954,nssv1445957,nssv1445956,nssv1445948,nssv1445949,nssv1445941,nssv1445938,nssv1445940,nssv1445958,nssv1445943,nssv1445942,nssv1445947,nssv1445945,nssv1445946,nssv1445944,nssv1445937 M 95 20 0 "" nsv524775 7 21275224 21277667 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700766 S 2026 0 1 "" nsv5655 7 21501709 21546443 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8344 S 9 0 1 "" NA12156 nsv830922 7 21566626 21737915 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445959 S 95 0 1 "" nsv5656 7 21583637 21589912 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8345 S 9 0 1 "" NA12156 nsv366567 7 21610146 21610436 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv385145 M 24 "" nsv437538 7 21625776 21629391 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467419 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19100 nsv520409 7 21633556 21634268 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697399 S 2026 0 1 "" nsv7393 7 21655985 27623219 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6117 S 9 0 0 "" NA12156 nsv5657 7 21668516 21701254 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv614 S 9 1 0 "" NA19240 nsv524106 7 21670954 21672572 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699982 S 2026 0 1 "" nsv365300 7 21976017 21976123 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv383878 M 24 "" nsv830923 7 22090081 22268213 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445960 S 95 1 0 "" nsv5658 7 22283063 22304367 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8346 S 9 0 1 "" NA12156 nsv5659 7 22397675 22431503 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4972 S 9 1 0 "" NA19129 nsv527614 7 22456862 22464254 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704079 S 2026 0 1 "" nsv507377 7 22481922 22487922 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621870,nssv620368 M 4 2 0 "" NA10860,NA15510 dgv2070e1 7 22528824 22694150 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv23565,esv185 M 271 0 0 "" NA06993 esv33541 7 22560106 22560328 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv94837,essv101668,essv96063,essv99232,essv94147 M 51 0 5 "" 21791,21909,22127,22275,22394 esv32662 7 22560106 22560953 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv95449 S 51 0 1 "" 21847 nsv526131 7 22615559 23012373 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702385 S 2026 0 1 "" nsv5660 7 22791259 22836705 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6118 S 9 0 1 "" NA12156 nsv524486 7 22840384 22993475 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700424 S 2026 1 0 "" nsv8070 7 22904102 22919533 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17331,nssv17954 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18517,NA18860 nsv437539 7 22909727 22921080 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467420 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18515 nsv818492 7 22913180 22913887 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416746,nssv1416744 M 112 0 2 "" NA19160,NA19161 nsv818493 7 22913180 22917437 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416451,nssv1416452,nssv1418466,nssv1416745,nssv1418467 M 112 0 5 "" NA18515,NA18517,NA19159,NA19192,NA19194 nsv516984 7 22913180 22919429 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv690419,nssv685827,nssv652494,nssv675456,nssv687037,nssv664997,nssv659845,nssv677005,nssv697054,nssv688917,nssv656556,nssv683631,nssv670518,nssv660281,nssv671482,nssv692953,nssv688535,nssv665541,nssv656987,nssv680402,nssv669985,nssv683966,nssv686850,nssv691560,nssv652640,nssv653066,nssv663177,nssv688235,nssv653554,nssv690466,nssv689407,nssv658730,nssv679207,nssv660916,nssv665678,nssv664242,nssv681515,nssv674916,nssv652912,nssv688077,nssv655318,nssv667100,nssv675187,nssv672274,nssv652676,nssv668160,nssv665812,nssv659581,nssv662783,nssv683632,nssv659545,nssv677881,nssv677162,nssv668569 M 2026 0 54 "" nsv442034 7 22913887 22917436 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv437540 7 22917422 22931296 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467421 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18854 nsv520080 7 22993475 22993879 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv689223,nssv660547 M 2026 0 2 "" nsv520600 7 23058201 23066048 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694390 S 2026 0 1 "" nsv5661 7 23078120 23109036 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10538 S 9 1 0 "" NA18956 nsv464408 7 23106610 23156375 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540327 S 1557 0 1 "" 1780854545_A nsv366543 7 23191270 23191438 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv385121 M 24 "" nsv509193 7 23291180 23320577 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623506,nssv619480 M 4 2 0 "" NA10860,NA18994 nsv5662 7 23313979 23323942 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8347 S 9 1 0 "" NA12156 nsv5663 7 23405374 23422111 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3509 S 9 1 0 "" NA12878 dgv2071e1 7 23493296 23653562 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv24820,esv26 M 271 0 0 "" NA07000 nsv830924 7 23500373 23541646 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445964 S 95 0 1 "" nsv365951 7 23543739 23549537 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384529 M 24 "" nsv510074 7 23582031 23588031 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618256 S 4 0 1 "" CHM nsv366286 7 23623364 23623444 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384864 M 24 "" nsv5664 7 23775839 23821170 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2638 S 9 0 1 "" NA18555 nsv830925 7 23787957 23963361 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445967,nssv1445966,nssv1445965 M 95 1 2 "" nsv519038 7 23799865 23828251 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696507 S 2026 1 0 "" dgv414n21 7 23864470 23886804 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv517796,nsv520476 M 2026 0 5 "" nsv5666 7 23900394 23934972 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv615 S 9 1 0 "" NA19240 nsv522696 7 23980268 23996764 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv706106 S 2026 0 1 "" nsv523653 7 23980268 23996764 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699454 S 2026 1 0 "" nsv366355 7 24031331 24031723 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384933 M 24 "" nsv517053 7 24037753 24199795 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv670496,nssv687461,nssv695539,nssv674426,nssv653693,nssv692600,nssv674069,nssv652642 M 2026 3 5 "" dgv129n17 7 24069247 24095578 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437541,nsv437542 M 60 0 2 "" NA18500,NA19205 nsv8071 7 24071705 24092669 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16932 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18502 nsv442035 7 24075411 24086271 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv830927 7 24075505 24251716 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445968 S 95 1 0 "" esv2752154 7 24109199 24207550 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6981787,essv6981786,essv6989262,essv6989516,essv6981788 M 771 0 1 "" BEC_468 dgv415n21 7 24199795 24201457 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv523814,nsv519048 M 2026 0 2 "" nsv507378 7 24240623 24246623 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622999 S 4 1 0 "" NA18994 nsv526721 7 24389714 24398822 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703061 S 2026 0 1 "" nsv518495 7 24389714 24404485 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695936 S 2026 0 1 "" nsv527599 7 24404485 24521150 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704061 S 2026 1 0 "" nsv520276 7 24462447 24840282 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697320 S 2026 1 0 "" nsv525284 7 24542329 24542640 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701388 S 2026 0 1 "" nsv507379 7 24548351 24554351 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620369 S 4 1 0 "" NA15510 nsv366672 7 24587154 24587209 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv385250 M 24 "" nsv5667 7 24617112 24646102 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3510 S 9 1 0 "" NA12878 nsv5668 7 24800697 24844834 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3512 S 9 0 1 "" NA12878 nsv5669 7 24836444 24867370 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3513 S 9 1 0 "" NA12878 nsv517583 7 24869088 24874550 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv678780,nssv652439 M 2026 0 2 "" nsv510075 7 24972636 24978636 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618257 S 4 0 1 "" CHM nsv524043 7 25034932 25037140 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699907 S 2026 0 1 "" nsv522075 7 25037140 25037796 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694846 S 2026 0 1 "" dgv807n27 7 25126049 25144940 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv464410,nsv464409 M 1557 0 2 "" 1798860113_A,HGDP00671 nsv464411 7 25150728 25155263 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540330 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00192 nsv519518 7 25346779 25352186 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696896 S 2026 0 1 "" dgv416n21 7 25373098 25379360 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv522815,nsv523322 M 2026 0 2 "" dgv417n21 7 25378965 25388461 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv525378,nsv526019 M 2026 0 2 "" nsv527227 7 25379360 25388461 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703627 S 2026 1 0 "" nsv5670 7 25463245 25477861 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8348 S 9 0 1 "" NA12156 nsv516849 7 25550837 25553555 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv679683,nssv654416,nssv691129,nssv692182 M 2026 0 4 "" nsv830928 7 25593387 25738254 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445969 S 95 1 0 "" nsv464412 7 25787199 25846651 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540331 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00611 nsv508449 7 25890515 25934377 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617346 S 4 0 1 "" CHM nsv5671 7 25891886 25928736 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv616,nssv4973,nssv6119,nssv3514 M 9 0 4 "" NA12156,NA12878,NA19129,NA19240 nsv441878 7 25915632 25918653 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv366364 7 26171685 26172534 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384942 M 24 "" nsv519252 7 26330661 26330858 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696744 S 2026 0 1 "" nsv830929 7 26361128 26522975 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445970 S 95 1 0 "" nsv464413 7 26386798 26397632 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540332 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00786 nsv516102 7 26390834 26392720 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv691130,nssv695030,nssv688778,nssv687184,nssv683633,nssv693967,nssv696654,nssv666225,nssv700537 M 2026 0 9 "" nsv5672 7 26484702 26531131 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10539 S 9 0 1 "" NA18956 nsv507380 7 26620967 26626967 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623000,nssv620370,nssv617732 M 4 3 0 "" CHM,NA15510,NA18994 nsv5673 7 26819957 26852487 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv617 S 9 1 0 "" NA19240 nsv5674 7 26925802 26970581 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8350 S 9 0 1 "" NA12156 nsv526526 7 26955382 26969353 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702838 S 2026 0 1 "" nsv5675 7 26991842 27026070 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2755 S 9 1 0 "" NA18555 nsv519583 7 27017202 27071504 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696934 S 2026 1 0 "" nsv830930 7 27169078 27360595 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445971 S 95 0 1 "" nsv437543 7 27210935 27213427 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467424 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18863 nsv366786 7 27218915 27221923 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv385364 M 24 "" nsv366664 7 27287576 27287850 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv385242 M 24 "" dgv2072e1 7 27566856 27746109 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv64,essv4463 M 271 0 0 "" NA18552 nsv5677 7 27612744 27657745 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8351 S 9 0 1 "" NA12156 nsv520555 7 27725869 27731990 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697483 S 2026 0 1 "" nsv830931 7 27944923 28142611 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445973,nssv1445972 M 95 2 0 "" nsv5678 7 28093210 28138065 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8352 S 9 0 1 "" NA12156 nsv830932 7 28143746 28366479 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445975,nssv1445977,nssv1445998,nssv1445993,nssv1445997,nssv1445992,nssv1445988,nssv1445984,nssv1445986,nssv1445987,nssv1445990,nssv1445979,nssv1445995,nssv1445994,nssv1445989,nssv1445978,nssv1445991,nssv1445983,nssv1445976,nssv1445982,nssv1445981,nssv1445980 M 95 21 1 "" nsv464414 7 28261492 28325617 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540333 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00444 nsv830933 7 28379516 28542454 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1445999 S 95 0 1 "" nsv5679 7 28412037 28452330 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8353 S 9 0 1 "" NA12156 nsv524247 7 28748583 28753326 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700139 S 2026 0 1 "" nsv524487 7 28770184 28771903 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700425 S 2026 0 1 "" nsv525084 7 28840193 28844952 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701142 S 2026 0 1 "" nsv5680 7 28974209 29007625 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3515 S 9 1 0 "" NA12878 nsv5681 7 29084525 29129632 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8354 S 9 0 1 "" NA12156 nsv830934 7 29126064 29300880 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446000 S 95 1 0 "" esv33032 7 29269846 29270024 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100845 S 51 1 0 "" 21656 nsv366043 7 29286340 29295681 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384621 M 24 "" nsv830935 7 29343168 29566030 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446001 S 95 1 0 "" essv5989 7 29421593 29560689 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18552 dgv2073e1 7 29421593 29708612 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv822,essv4481 M 271 0 0 "" NA18552 nsv469585 7 29431182 29596384 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649699 M 265 0 0 Samples from several populations that are part of the HapMap project. "" nsv8072 7 29442384 29562272 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15556,nssv16119,nssv16059,nssv17203 M 31 3 1 Samples from several populations that are part of the HapMap project. "" NA12740,NA18504,NA18552 nsv442036 7 29446980 29460758 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv516270 7 29447057 29551491 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv690620,nssv667235,nssv681268,nssv703278,nssv681451,nssv700657 M 2026 4 2 "" esv33700 7 29448628 29488026 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101602,essv95316,essv95874,essv92834,essv92630 M 51 0 5 "" 21603,21872,21911,21939,22233 nsv830936 7 29546748 29773373 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446002 S 95 1 0 "" nsv5682 7 29693318 29725052 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv619 S 9 1 0 "" NA19240 nsv365765 7 29844444 29844523 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384343 M 24 "" nsv5683 7 30079366 30094322 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2756 S 9 1 0 "" NA18555 nsv523514 7 30161649 30217517 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699287 S 2026 1 0 "" nsv525379 7 30169371 30178931 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701500 S 2026 0 1 "" nsv5684 7 30309721 30337833 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4974 S 9 1 0 "" NA19129 nsv527038 7 30430707 30935185 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703414 S 2026 1 0 "" nsv830938 7 30457470 30670763 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446003 S 95 1 0 "" nsv830939 7 30517711 30684746 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446004 S 95 0 1 "" nsv464416 7 30584986 30610243 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540334 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00254 nsv526591 7 30598310 30610243 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702910 S 2026 0 1 "" nsv518297 7 30747593 30773340 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695729 S 2026 1 0 "" nsv527370 7 30762746 30773340 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703802 S 2026 1 0 "" nsv527586 7 30776663 30777059 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704047 S 2026 0 1 "" nsv464418 7 30845626 30889408 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540336 S 1557 0 1 "" 1780854340_A nsv5685 7 30874387 30907848 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv620 S 9 1 0 "" NA19240 nsv519081 7 30907557 30909850 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696552 S 2026 0 1 "" nsv464419 7 30936243 30993078 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540337 S 1557 0 1 "" NINDS_13 nsv830940 7 31022610 31234156 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446005 S 95 1 0 "" nsv5686 7 31086417 31100431 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3516 S 9 0 1 "" NA12878 nsv524152 7 31101945 31102501 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700031 S 2026 0 1 "" esv2752155 7 31396986 31512871 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6982077,essv6986078,essv6988489 M 771 1 0 "" BEC_518 esv33248 7 31668511 31676022 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99454 S 51 1 0 "" 22335 nsv464420 7 31787063 31790733 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540338 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01212 nsv527840 7 31837732 31839331 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704338 S 2026 0 1 "" nsv464421 7 31979659 32196639 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540339 S 1557 1 0 "" 1780854338_A nsv523567 7 31982467 32203819 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699349 S 2026 1 0 "" esv2752156 7 31990100 32196639 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6984695,essv6984696,essv6984697,essv6988837,essv6987652 M 771 1 0 "" SPC_166 nsv528955 7 31998523 32001542 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705651 S 2026 0 1 "" nsv5688 7 32003714 32037661 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8355 S 9 1 0 "" NA12156 nsv5689 7 32085663 32119736 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8356 S 9 1 0 "" NA12156 nsv5690 7 32152127 32197461 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2639,nssv3517 M 9 0 2 "" NA12878,NA18555 nsv519972 7 32188623 32196639 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv659761,nssv685133 M 2026 0 2 "" nsv830941 7 32459326 32642578 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446006 S 95 1 0 "" nsv442037 7 32504626 32510377 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv5691 7 32638333 32673604 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3518 S 9 1 0 "" NA12878 nsv830942 7 32821315 33019975 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446008 S 95 1 0 "" nsv524383 7 32833995 32836437 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700299 S 2026 0 1 "" nsv508450 7 32896575 32958088 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622572 S 4 0 1 "" NA18994 dgv808n27 7 32904969 32966040 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv464423,nsv464422 M 1557 2 0 "" 1780862408_A,HGDP00885 nsv520406 7 32904969 32966077 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv671212,nssv701130,nssv690986,nssv683870,nssv691705 M 2026 5 0 "" nsv830943 7 32940346 33125999 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446009 S 95 1 0 "" nsv521481 7 33015714 33018368 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698092 S 2026 0 1 "" nsv524473 7 33075888 33077458 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700411 S 2026 0 1 "" nsv830944 7 33163132 33323122 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446011,nssv1446010 M 95 2 0 "" nsv523843 7 33226384 33226521 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699676 S 2026 0 1 "" nsv520794 7 33280146 33290763 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv679552,nssv675491 M 2026 0 2 "" nsv830945 7 33299888 33443832 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446012 S 95 0 1 "" nsv523799 7 33386800 33443132 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699627 S 2026 0 1 "" nsv464424 7 33409783 33491053 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540342 S 1557 0 1 "" NINDS_172 nsv528526 7 33413110 33422954 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705137 S 2026 0 1 "" nsv523888 7 33413110 33437173 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699731 S 2026 0 1 "" nsv830946 7 33420606 33600119 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446013 S 95 1 0 "" nsv365542 7 33481514 33481647 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384120 M 24 "" nsv830947 7 33525389 33719558 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446014 S 95 1 0 "" nsv365442 7 33561931 33561931 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384020 M 24 "" nsv507381 7 33631011 33637011 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620371 S 4 1 0 "" NA15510 nsv365852 7 33672097 33672427 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384430 M 24 "" dgv809n27 7 33689384 33711628 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv464425,nsv464426 M 1557 0 2 "" HGDP00454,HGDP00464 nsv830949 7 33916387 34108858 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446015 S 95 1 0 "" nsv523931 7 33932230 33933648 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699776 S 2026 0 1 "" nsv5692 7 34172321 34217265 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8357 S 9 0 1 "" NA12156 nsv523351 7 34224457 34236835 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699100 S 2026 1 0 "" nsv830950 7 34286135 34465379 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446016 S 95 1 0 "" nsv830951 7 34308054 34467093 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446017 S 95 0 1 "" nsv366629 7 34420944 34421225 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv385207 M 24 "" nsv5693 7 34421330 34467197 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6120 S 9 0 1 "" NA12156 nsv818494 7 34483294 34492887 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418468 S 112 0 1 "" NA19193 nsv523149 7 34491745 34492789 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698857 S 2026 0 1 "" nsv523190 7 34491745 34492887 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698906 S 2026 1 0 "" nsv517860 7 34507491 34509442 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695264 S 2026 0 1 "" dgv418n21 7 34662462 34697577 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv528377,nsv516166 M 2026 0 23 "" nsv818495 7 34672475 34681026 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416557,nssv1416748,nssv1416556,nssv1416747 M 112 0 4 "" NA19160,NA19161,NA19171,NA19173 nsv442038 7 34672817 34685726 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv5694 7 34698205 34706156 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8359 S 9 0 1 "" NA12156 nsv830952 7 34731001 34880164 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446019,nssv1446020 M 95 2 0 "" nsv830953 7 34808253 35004329 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446021 S 95 1 0 "" nsv5695 7 34853980 34860349 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2640 S 9 0 1 "" NA18555 nsv830954 7 35077816 35297971 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446022 S 95 1 0 "" nsv5696 7 35185414 35227914 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8360 S 9 0 1 "" NA12156 nsv507382 7 35312555 35318555 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623002,nssv620373 M 4 2 0 "" NA15510,NA18994 nsv471638 7 35315392 35500044 CNV Gain Sharp et al 2005 15918152 BAC_aCGH,FISH Eichler Segmental Duplication BAC array nssv550260,nssv550259,nssv550262,nssv550261 M 48 4 0 "" NA11323,NA15724,NA15726,NA15731 nsv518151 7 35336100 35340385 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695572 S 2026 0 1 "" nsv365452 7 35381243 35381302 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384030 M 24 "" nsv5697 7 35427379 35473233 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6121 S 9 0 1 "" NA12156 nsv527371 7 35433916 35461610 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703803 S 2026 1 0 "" dgv419n21 7 35485742 35539172 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv519322,nsv523620 M 2026 2 0 "" nsv5699 7 35493949 35544570 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3519,nssv8361 M 9 2 0 "" NA12156,NA12878 dgv2074e1 7 35597466 35893678 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv15778,esv278 M 271 0 0 "" NA19131 nsv469590 7 35668567 35852744 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649705 M 265 0 0 Samples from several populations that are part of the HapMap project. "" nsv830955 7 35771274 35910387 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446024,nssv1446023 M 95 2 0 "" nsv523442 7 35799026 35821420 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699198 S 2026 0 1 "" nsv528312 7 36033964 36039152 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704890 S 2026 0 1 "" nsv830956 7 36034520 36117828 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446025 S 95 0 1 "" nsv519219 7 36108999 36129901 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696709 S 2026 1 0 "" nsv525981 7 36118434 36119737 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702200 S 2026 0 1 "" nsv365987 7 36147395 36149947 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384565 M 24 "" nsv365653 7 36149570 36149947 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384231 M 24 "" nsv521965 7 36219096 36227501 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694733 S 2026 0 1 "" nsv830957 7 36276870 36448863 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446026 S 95 1 0 "" nsv366801 7 36347810 36347859 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv385379 M 24 "" nsv830958 7 36385151 36544748 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446027 S 95 1 0 "" nsv464427 7 36390508 36604963 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540345 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01077 nsv5700 7 36416888 36441480 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9708 S 9 1 0 "" NA18507 esv33783 7 36427915 36428332 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93192 S 51 1 0 "" 22170 nsv830960 7 36457227 36622525 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446028 S 95 0 1 "" nsv519057 7 36548317 36551106 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696528 S 2026 0 1 "" nsv518997 7 36576203 36580621 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696464 S 2026 0 1 "" nsv507383 7 36640341 36646341 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620374,nssv621871,nssv623003 M 4 3 0 "" NA10860,NA15510,NA18994 nsv366743 7 36652121 36652209 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv385321 M 24 "" nsv5701 7 36657728 36675220 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8362 S 9 0 1 "" NA12156 nsv5702 7 36754413 36785649 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4975 S 9 1 0 "" NA19129 nsv437544 7 36836797 36901935 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467425 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19142 nsv5703 7 36867692 36879647 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8363 S 9 0 1 "" NA12156 dgv810n27 7 36915814 36918248 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv464430,nsv464429 M 1557 0 2 "" HGDP00541,HGDP00546 nsv507384 7 36924455 36930455 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620375,nssv623004 M 4 2 0 "" NA15510,NA18994 nsv507385 7 37104676 37110676 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617733,nssv621872 M 4 2 0 "" CHM,NA10860 nsv830961 7 37109534 37288905 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446030 S 95 1 0 "" dgv420n21 7 37147750 37152815 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv525516,nsv523409 M 2026 0 2 "" nsv523218 7 37210215 37211836 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698940 S 2026 0 1 "" nsv830962 7 37226997 37404458 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446031 S 95 1 0 "" nsv818496 7 37239804 37240210 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416167 S 112 0 1 "" NA12891 nsv442039 7 37239808 37241308 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv366178 7 37250518 37250844 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384756 M 24 "" dgv2075e1 7 37371953 37631800 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv14475,esv758 M 271 0 0 "" NA19201 nsv510076 7 37379406 37385406 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624025 S 4 0 1 "" NA18994 nsv5704 7 37409342 37454749 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6122 S 9 0 1 "" NA12156 nsv366017 7 37459111 37459111 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384595 M 24 "" essv13275 7 37484765 37541846 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19201 nsv526136 7 37509404 37633715 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702391 S 2026 0 1 "" nsv8073 7 37560047 37563418 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15140 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18853 nsv365973 7 37609890 37609890 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384551 M 24 "" nsv8074 7 37638580 37983327 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13871,nssv15170,nssv15017,nssv17233,nssv16178,nssv15809,nssv14844 M 31 0 7 Samples from several populations that are part of the HapMap project. "" NA12155,NA12872,NA18504,NA18563,NA18853,NA18975,NA19173 nsv510077 7 37812030 37818030 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622133,nssv624026,nssv618258 M 4 0 3 "" CHM,NA10860,NA18994 nsv525236 7 37878273 37896907 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701326 S 2026 0 1 "" dgv89n68 7 37946228 38163758 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH nsv830963,nsv830964 M 95 8 0 "" dgv2076e1 7 37991943 38296695 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv22939,esv699 M 271 0 0 "" NA07357 esv32671 7 38006052 38006639 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv92903 S 51 0 1 "" 21939 nsv464431 7 38046545 38134865 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540349 S 1557 0 1 "" NINDS_119 nsv5705 7 38049507 38087361 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8364 S 9 0 1 "" NA12156 nsv8075 7 38055479 38060732 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15047 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18563 nsv8076 7 38061288 38079680 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15067,nssv15513,nssv14945 M 31 3 0 Samples from several populations that are part of the HapMap project. "" NA07048,NA10847,NA11830 esv33146 7 38061288 38179436 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101519,essv97494,essv100698,essv96837,essv100953,essv95189,essv98176,essv94683,essv93980,essv94442,essv95656,essv95427,essv93140,essv95398,essv101738,essv95862,essv92791,essv93687,essv99903,essv96012,essv93592,essv93409,essv99635,essv92631,essv98118,essv99265,essv97678,essv100255,essv100376,essv99367,essv98356,essv96308,essv94184 M 51 1 32 "" 21603,21616,21656,21659,21693,21721,21772,21791,21802,21808,21841,21847,21863,21872,21909,21911,21944,21972,22086,22127,22128,22170,22217,22233,22259,22275,22278,22286,22300,22335,22352,22371,22394 essv20735 7 38067319 38191405 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA07357 esv34699 7 38084300 38160031 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6987763,essv6980317 M 771 0 1 "" NA07034 nsv464432 7 38091830 38108760 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540350 S 1557 0 1 "" 1787431197_A nsv818497 7 38091830 38153686 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418005 S 112 0 1 "" NA07357 nsv519863 7 38091830 38190796 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv675803,nssv689834,nssv676287,nssv678359,nssv685970,nssv662519,nssv681291,nssv686988,nssv659151,nssv701170,nssv702948,nssv671558,nssv697651,nssv701002,nssv680494,nssv704497,nssv662520 M 2026 0 17 "" nsv464433 7 38094893 38153686 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540351 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00125 nsv821692 7 38099353 38114752 CNV Loss Sebat_et_al_2004 15273396 ROMA Custom Nimblegen photoprint 85000 probe ROMA oligo array nssv1421330 S 31 0 1 "" nsv464434 7 38104511 38136806 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540352 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00417 nsv830965 7 38123854 38294287 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446041 S 95 1 0 "" nsv437984 7 38127240 38144714 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv468901,nssv468900 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA07034,NA07048 nsv8077 7 38144086 38146752 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15418 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19144 nsv5706 7 38144829 38179897 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv621 S 9 1 0 "" NA19240 nsv8078 7 38153096 38179435 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18270,nssv15165,nssv15839,nssv14975,nssv14320,nssv14029,nssv15145,nssv15478,nssv14792,nssv17783,nssv17263,nssv16962,nssv15408 M 31 0 13 Samples from several populations that are part of the HapMap project. "" NA07029,NA10847,NA12802,NA18502,NA18504,NA18537,NA18564,NA18572,NA18972,NA18980,NA19144,NA19173,NA19221 nsv5707 7 38154224 38180422 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3520,nssv2641 M 9 0 2 "" NA12878,NA18555 nsv830966 7 38166903 38375793 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446042 S 95 1 0 "" nsv526627 7 38270535 38276263 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702949 S 2026 0 1 "" nsv366413 7 38281700 38282027 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384991 M 24 "" nsv8079 7 38284034 38287008 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14059 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18572 nsv365971 7 38354128 38354178 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384549 M 24 "" nsv366791 7 38423139 38423139 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv385369 M 24 "" nsv830967 7 38687077 38842493 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446043 S 95 0 1 "" nsv830968 7 38900771 39056783 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446045,nssv1446044 M 95 2 0 "" nsv366945 7 39153584 39153648 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv385523 M 24 "" nsv365737 7 39365298 39365611 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384315 M 24 "" nsv508451 7 39434024 39560462 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618807 S 4 0 1 "" NA10860 nsv5708 7 39587570 39628775 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3521 S 9 0 1 "" NA12878 nsv5710 7 39604435 39639699 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv622 S 9 1 0 "" NA19240 nsv464436 7 39791933 39906284 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540353 S 1557 1 0 "" 1780854393_A nsv521293 7 39794284 39800724 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697896 S 2026 0 1 "" nsv518849 7 39794284 39803728 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696302 S 2026 0 1 "" dgv2077e1 7 39833420 40042823 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1009,essv6430 M 271 0 0 "" NA18592 esv34547 7 39850272 40004205 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6986919,essv6979648,essv6979649,essv6986920 M 771 1 0 "" NA18592 nsv464437 7 39867881 39970408 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540354 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00778 nsv520748 7 40105758 40198380 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697588 S 2026 0 1 "" nsv520374 7 40145833 40200240 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697379 S 2026 0 1 "" esv34484 7 40156399 40262323 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6979054,essv6979055,essv6986785,essv6986784 M 771 1 0 "" NA12872 dgv2078e1 7 40157270 40270518 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1252,essv19321 M 271 0 0 "" NA12872 nsv8081 7 40166468 40259479 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv13901 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA12872 nsv830969 7 40195816 40355629 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446046 S 95 1 0 "" nsv5711 7 40263759 40286228 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8365 S 9 0 1 "" NA12156 nsv830971 7 40296315 40473412 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446048,nssv1446047 M 95 1 1 "" nsv5712 7 40358307 40392583 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3522 S 9 1 0 "" NA12878 nsv509194 7 40501704 40529367 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618064 S 4 1 0 "" CHM nsv830972 7 40587949 40719157 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446049 S 95 0 1 "" nsv830973 7 40589659 40624834 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446050 S 95 0 1 "" nsv7394 7 40619815 40653390 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9438 S 9 0 0 "" NA18517 nsv5713 7 40640718 40656347 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv623 S 9 1 0 "" NA19240 nsv5714 7 40799262 40833053 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8366 S 9 0 1 "" NA12156 nsv830974 7 41162816 41350391 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446052 S 95 1 0 "" nsv830975 7 41170257 41223804 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446053,nssv1446054 M 95 0 2 "" nsv5715 7 41221261 41265733 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2642 S 9 0 1 "" NA18555 nsv5716 7 41609717 41643050 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2643 S 9 1 0 "" NA18555 nsv5717 7 41763225 41796574 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2645 S 9 1 0 "" NA18555 nsv464440 7 41894793 41924839 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540356 S 1557 0 1 "" 1798860010_A nsv830976 7 41916641 41955292 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446055 S 95 1 0 "" nsv525387 7 42079564 42092092 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701509 S 2026 0 1 "" nsv830977 7 42180643 42362517 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446056,nssv1446057 M 95 1 1 "" nsv830978 7 42252322 42403930 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446058 S 95 1 0 "" nsv525198 7 42272092 42295638 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701279 S 2026 0 1 "" nsv5718 7 42284843 42321714 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3523,nssv8367,nssv4976 M 9 3 0 "" NA12156,NA12878,NA19129 nsv515778 7 42316959 42320240 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv664747,nssv662477 M 2026 0 2 "" nsv5719 7 42494566 42517516 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10540 S 9 1 0 "" NA18956 nsv830979 7 42619822 42799851 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446059 S 95 1 0 "" nsv527510 7 42851090 42893170 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703964 S 2026 0 1 "" nsv521052 7 42856485 42859873 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697755 S 2026 0 1 "" nsv519952 7 43010823 43021866 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697143 S 2026 0 1 "" nsv515543 7 43016959 43021866 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv659694,nssv663865 M 2026 0 2 "" nsv510956 7 43095491 43139030 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621597 S 4 0 0 "" NA15510 nsv521089 7 43188246 43197352 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv687061,nssv681774,nssv689106 M 2026 0 3 "" nsv519592 7 43368640 43371462 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696940 S 2026 0 1 "" nsv518728 7 43368640 43426999 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696178 S 2026 0 1 "" nsv510078 7 43373285 43379285 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621305 S 4 0 1 "" NA15510 nsv464441 7 43464956 43600654 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540357 S 1557 0 1 "" 1780862066_A nsv5721 7 43523372 43549372 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv624 S 9 1 0 "" NA19240 nsv830980 7 43678837 43891378 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446065,nssv1446061,nssv1446060,nssv1446064,nssv1446063,nssv1446066,nssv1446067 M 95 0 7 "" dgv2079e1 7 43725779 43830031 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv8817,essv16627,essv1495,essv3030,essv20237,essv6664,essv10562,essv10031,essv12201,essv16129,essv15082,essv9887,essv3280,essv22055,essv16079,essv21726,essv15546,essv16437,essv20088,essv10995,essv17029,essv21539,essv14689,essv19386,essv16850,essv6916,essv23788,essv21065,esv428,essv6139,essv9031,essv8118,essv8342,essv14103,essv17180,essv15322,essv9791,essv19548,essv15652,essv9687,essv11210,essv16285,essv17962,essv3352,essv15758,essv11689,essv1185,essv12678,essv12480,essv23428,essv15822,essv131,essv9128 M 271 0 0 "" NA06991,NA07048,NA10854,NA11840,NA12003,NA12144,NA12154,NA12248,NA12763,NA12864,NA12873,NA18500,NA18501,NA18508,NA18532,NA18605,NA18608,NA18858,NA18860,NA18861,NA18862,NA18863,NA18912,NA18913,NA18945,NA18951,NA18968,NA18972,NA18980,NA18981,NA19099,NA19100,NA19101,NA19129,NA19131,NA19132,NA19137,NA19139,NA19142,NA19143,NA19144,NA19145,NA19154,NA19159,NA19161,NA19171,NA19204,NA19205,NA19206,NA19207,NA19223,NA19240 nsv8082 7 43768995 44020068 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17984,nssv15200,nssv15869,nssv16992,nssv17813,nssv15508,nssv15077,nssv16208,nssv15175,nssv14440,nssv14380,nssv15195,nssv14119,nssv17361,nssv14572,nssv15127,nssv17293,nssv18300,nssv16141,nssv14350,nssv17307,nssv13931 M 31 20 0 Samples from several populations that are part of the HapMap project. "" NA11830,NA12155,NA12802,NA12872,NA18502,NA18504,NA18517,NA18537,NA18563,NA18572,NA18853,NA18860,NA18942,NA18972,NA18980,NA19132,NA19144,NA19173,NA19221,NA19240 nsv366185 7 43770086 43771629 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384763 M 24 "" esv33894 7 43790421 43827597 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv92851,essv100292 M 51 0 2 "" 21939,22300 nsv830983 7 43881681 44014463 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446072,nssv1446079,nssv1446071,nssv1446068,nssv1446070,nssv1446069,nssv1446078,nssv1446076,nssv1446075,nssv1446077 M 95 0 10 "" nsv509195 7 43959957 44074621 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619481 S 4 1 0 "" NA10860 nsv830984 7 44105337 44295426 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446081,nssv1446080 M 95 2 0 "" nsv525555 7 44151147 44161859 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701694 S 2026 0 1 "" nsv526063 7 44151147 44222741 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702302 S 2026 0 1 "" esv33931 7 44217645 44218054 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98268 S 51 0 1 "" 21772 nsv523191 7 44326478 44354231 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698907 S 2026 0 1 "" nsv515502 7 44335141 44355226 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv653346,nssv656065 M 2026 0 2 "" nsv366568 7 44373419 44373566 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv385146 M 24 "" nsv5722 7 44548667 44564066 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2757 S 9 1 0 "" NA18555 nsv830985 7 44606314 44792427 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446082 S 95 0 1 "" nsv5723 7 44654153 44688095 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3524 S 9 1 0 "" NA12878 nsv366876 7 44773814 44773960 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv385454 M 24 "" nsv366390 7 44843678 44844511 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384968 M 24 "" nsv830986 7 44942646 45131895 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446086,nssv1446083,nssv1446084,nssv1446087,nssv1446089,nssv1446088,nssv1446091,nssv1446090 M 95 0 8 "" nsv523402 7 44953118 44963654 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699153 S 2026 1 0 "" nsv516731 7 44985030 44998342 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv682815,nssv700467,nssv670497,nssv702001 M 2026 0 4 "" nsv510957 7 45074692 45152704 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624314 S 4 0 0 "" NA18994 nsv469714 7 45090746 45246924 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649735 M 265 0 8 Samples from several populations that are part of the HapMap project. "" nsv5724 7 45332842 45367306 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv625 S 9 1 0 "" NA19240 nsv523747 7 45342345 45371709 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699564 S 2026 0 1 "" nsv818498 7 45430164 45477211 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417879 S 112 0 1 "" NA18853 nsv523515 7 45497936 45508926 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699288 S 2026 0 1 "" nsv818499 7 45806673 45814594 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416749 S 112 1 0 "" NA19159 nsv517112 7 45887074 45887123 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv665958,nssv668191,nssv676307,nssv664794,nssv684234,nssv683967,nssv686173,nssv667477,nssv683602,nssv676397,nssv666572,nssv666955,nssv690925,nssv687140,nssv662176,nssv664998,nssv669043,nssv683152,nssv687431,nssv653803,nssv690821,nssv670426,nssv673543,nssv686537,nssv659547,nssv693022,nssv661431,nssv656177,nssv652087,nssv663866,nssv693319,nssv673117,nssv677111,nssv673810,nssv678203,nssv676164,nssv680119 M 2026 0 37 "" nsv520026 7 46024926 46039853 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv672645,nssv685675,nssv662093,nssv660140 M 2026 0 4 "" nsv830987 7 46065514 46228096 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446092 S 95 0 1 "" dgv421n21 7 46129429 46131124 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv524929,nsv518152 M 2026 0 2 "" nsv5725 7 46135215 46179873 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8368 S 9 0 1 "" NA12156 nsv5726 7 46253179 46298349 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8369 S 9 0 1 "" NA12156 nsv830988 7 46618433 46781884 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446093 S 95 1 0 "" dgv2080e1 7 46646975 46655440 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv10966,essv12935,esv948 M 271 0 0 "" NA19092,NA19094 nsv525012 7 46651987 46656890 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701049 S 2026 0 1 "" nsv818501 7 46651987 46656890 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418284,nssv1418285 M 112 0 2 "" NA19092,NA19094 esv34471 7 46652790 46657900 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6987390,essv6978420 M 771 0 1 "" NA19094 nsv8083 7 46675289 46870910 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15899 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19173 nsv830989 7 46760274 46938079 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446094,nssv1446095,nssv1446097,nssv1446098,nssv1446099,nssv1446100 M 95 3 3 "" nsv527412 7 46795829 46796744 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703850 S 2026 0 1 "" nsv517543 7 46853239 46854268 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv675321,nssv679388,nssv652315 M 2026 3 0 "" nsv5727 7 46868520 46897908 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8370,nssv4977 M 9 0 2 "" NA12156,NA19129 nsv507386 7 46871532 46877532 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620376 S 4 1 0 "" NA15510 nsv5728 7 46959442 46994920 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3525 S 9 1 0 "" NA12878 nsv5729 7 47032055 47067404 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3526 S 9 1 0 "" NA12878 nsv442040 7 47058526 47062164 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv366041 7 47184515 47184580 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384619 M 24 "" nsv365584 7 47250547 47259526 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384162 M 24 "" nsv507387 7 47299049 47305049 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617734,nssv621873,nssv623005,nssv620377 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv509196 7 47382083 47449893 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619482 S 4 1 0 "" NA10860 nsv7395 7 47427347 47467710 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2646 S 9 0 0 "" NA18555 nsv5730 7 47459998 47475422 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv626 S 9 1 0 "" NA19240 nsv519172 7 47502751 47504660 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696655 S 2026 0 1 "" nsv523498 7 47504660 47505143 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699267 S 2026 0 1 "" nsv526963 7 47514397 47523291 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703335 S 2026 0 1 "" nsv522585 7 47537977 47550925 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705972 S 2026 0 1 "" nsv830990 7 47540780 47610824 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446101,nssv1446102,nssv1446103 M 95 0 3 "" nsv830991 7 47627770 47799236 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446104 S 95 0 1 "" nsv464442 7 47690735 48132081 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540358 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01385 nsv365291 7 47759681 47759747 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv383869 M 24 "" nsv5732 7 47857520 47860271 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9709 S 9 1 0 "" NA18507 nsv528154 7 48043456 48043862 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704702 S 2026 0 1 "" nsv5733 7 48164307 48211290 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9710 S 9 0 1 "" NA18507 nsv521082 7 48169775 48174237 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv681516,nssv682895 M 2026 0 2 "" nsv442041 7 48170032 48178564 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv524173 7 48256881 48257097 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700053 S 2026 0 1 "" nsv830992 7 48274669 48463703 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446105 S 95 1 0 "" nsv442042 7 48359113 48369286 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv527625 7 48364044 48373598 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704092 S 2026 0 1 "" nsv366329 7 48489682 48489682 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384907 M 24 "" nsv464443 7 48600415 48672591 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540359 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01311 nsv7396 7 48676203 48769056 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv11142,nssv627 M 9 0 0 "" NA15510,NA19240 nsv292 7 48687391 48748400 OTHER Inversion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv292 S 1 0 0 "" NA15510 nsv507388 7 48714829 48720829 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620378 S 4 1 0 "" NA15510 esv33916 7 48718410 48757723 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv94215 S 51 1 0 "" 22394 nsv507389 7 48755510 48761510 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620379,nssv623006 M 4 2 0 "" NA15510,NA18994 nsv516126 7 48764705 48768562 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv680683,nssv666382 M 2026 0 2 "" nsv366839 7 48942593 48944206 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv385417 M 24 "" nsv442043 7 48951405 48955093 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv520168 7 48951821 48954889 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv661338,nssv685216 M 2026 0 2 "" nsv515884 7 49129925 49208161 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv665402,nssv704080,nssv665140 M 2026 2 1 "" nsv830994 7 49142875 49340725 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446114,nssv1446113,nssv1446111,nssv1446106,nssv1446110,nssv1446112,nssv1446109,nssv1446108 M 95 8 0 "" nsv5734 7 49213911 49236873 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv629 S 9 1 0 "" NA19240 nsv5735 7 49247784 49292545 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8371 S 9 0 1 "" NA12156 nsv830995 7 49320090 49501391 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446115 S 95 1 0 "" nsv365297 7 49329327 49329644 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv383875 M 24 "" nsv830996 7 49468484 49630867 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446116,nssv1446117 M 95 2 0 "" nsv5736 7 49473319 49523207 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9901,nssv10541,nssv2647,nssv4978,nssv630,nssv3527,nssv2648,nssv6124 M 9 0 7 "" NA12156,NA12878,NA18507,NA18555,NA18956,NA19129,NA19240 nsv508452 7 49493777 49507391 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617347,nssv618808,nssv619988,nssv622573 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv830997 7 49748127 49913759 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446119 S 95 1 0 "" nsv366512 7 49798624 49798701 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv385090 M 24 "" nsv510079 7 49807264 49813264 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621306,nssv624027 M 4 0 2 "" NA15510,NA18994 nsv830998 7 49880444 49933825 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446120 S 95 0 1 "" nsv518219 7 50046933 50072117 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695644 S 2026 0 1 "" nsv520090 7 50047275 50072117 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv677268,nssv660637,nssv704139 M 2026 1 2 "" nsv510080 7 50084945 50090945 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624029 S 4 0 1 "" NA18994 nsv522250 7 50216935 50228945 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695031 S 2026 0 1 "" nsv515738 7 50250318 50268416 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv676346,nssv656256,nssv663178,nssv667884,nssv686093,nssv664638 M 2026 0 6 "" nsv5737 7 50259976 50271371 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10542 S 9 1 0 "" NA18956 nsv507390 7 50317744 50323744 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617735,nssv623007,nssv620381,nssv621874 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv516640 7 50340172 50342944 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv663014,nssv696578,nssv669818 M 2026 0 3 "" nsv521070 7 50455465 50459811 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv693769,nssv681237 M 2026 0 2 "" nsv5738 7 50509239 50541745 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10543 S 9 1 0 "" NA18956 nsv507391 7 50640433 50646433 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623008,nssv617736,nssv621875 M 4 3 0 "" CHM,NA10860,NA18994 nsv524131 7 50707579 50735512 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700009 S 2026 0 1 "" nsv527462 7 50707579 50763592 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703905 S 2026 0 1 "" nsv520092 7 50717805 50747995 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv660638,nssv689549 M 2026 0 2 "" nsv508453 7 50737989 50804648 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618809 S 4 0 1 "" NA10860 nsv442044 7 50769283 50773981 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv830999 7 50794944 50939018 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446121 S 95 1 0 "" nsv366091 7 50855885 50855942 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384669 M 24 "" nsv516294 7 50958212 50966706 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv667388,nssv684739 M 2026 2 0 "" nsv5739 7 50982893 50986469 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8372 S 9 1 0 "" NA12156 nsv5740 7 51082266 51112275 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6125 S 9 1 0 "" NA12156 nsv831000 7 51105527 51285843 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446122 S 95 1 0 "" nsv366189 7 51130688 51130790 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384767 M 24 "" nsv5741 7 51329590 51402690 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2649,nssv3528,nssv6126 M 9 0 3 "" NA12156,NA12878,NA18555 nsv510081 7 51383936 51389936 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621307,nssv624030 M 4 0 2 "" NA15510,NA18994 esv2752158 7 51390000 51613400 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6986180,essv6988540,essv6982458,essv6982459,essv6982460 M 771 1 0 "" BEC_447 nsv365829 7 51492024 51492116 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384407 M 24 "" nsv5744 7 51522714 51552663 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv631 S 9 1 0 "" NA19240 nsv527881 7 51598270 51604070 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704383 S 2026 0 1 "" nsv510082 7 51751979 51757979 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618259,nssv621308,nssv624031 M 4 0 3 "" CHM,NA15510,NA18994 nsv8084 7 51807710 52810883 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14602 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18942 nsv365990 7 51818974 51818974 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384568 M 24 "" nsv519964 7 51819101 52140921 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697151 S 2026 1 0 "" nsv365689 7 51869172 51869484 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384267 M 24 "" nsv522026 7 52015199 52020518 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694796 S 2026 0 1 "" nsv464445 7 52056670 52081007 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540360 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01228 nsv507392 7 52095086 52101086 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620382,nssv617737,nssv621876,nssv623009 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv437545 7 52106917 52113483 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467426 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19103 nsv521226 7 52201103 52201212 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv688850,nssv686302 M 2026 0 2 "" nsv517177 7 52503100 52517985 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv654128,nssv687796,nssv679309,nssv678253,nssv678360,nssv670144,nssv673458,nssv671616,nssv677463,nssv653932,nssv677906,nssv682390,nssv665940,nssv687235,nssv686280,nssv693648,nssv655638,nssv680826,nssv662910,nssv690248,nssv655490,nssv672461,nssv693200,nssv671201,nssv655073,nssv688094,nssv672233,nssv679963,nssv691494,nssv651876,nssv663551,nssv651712,nssv686057,nssv655373,nssv693447,nssv656483,nssv670924,nssv678133,nssv684632,nssv689224,nssv659258,nssv677664,nssv678875,nssv659043,nssv676673,nssv689438,nssv692012,nssv692501,nssv691574,nssv672602,nssv664558,nssv689775 M 2026 52 0 "" nsv818502 7 52503100 52517985 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415844 S 112 1 0 "" NA11993 dgv811n27 7 52507500 52526443 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv464447,nsv464448,nsv464446 M 1557 3 0 "" HGDP00072,HGDP01164,NINDS_38 nsv818503 7 52507737 52517985 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418006 S 112 1 0 "" NA07345 nsv526376 7 52507737 52522744 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702672 S 2026 1 0 "" nsv442045 7 52510932 52516605 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv510083 7 52684936 52690936 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624032 S 4 0 1 "" NA18994 nsv831001 7 52777743 52926992 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446123 S 95 0 1 "" nsv464449 7 52783702 52800574 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540364 S 1557 0 1 "" NINDS_209 nsv522501 7 52810652 52813797 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705869 S 2026 0 1 "" nsv5745 7 52875943 52909179 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv632 S 9 1 0 "" NA19240 nsv831002 7 52927209 53123225 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446124 S 95 1 0 "" nsv437547 7 52972478 53019061 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467428 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19202 nsv442046 7 52988220 52992832 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv517348 7 52988412 53013699 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv677006,nssv681791,nssv677883,nssv667163,nssv651796,nssv653218,nssv656420,nssv693920,nssv654739,nssv658906,nssv691404 M 2026 0 11 "" nsv5746 7 53030464 53064530 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2758 S 9 1 0 "" NA18555 nsv517872 7 53036260 53039169 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695278 S 2026 0 1 "" nsv8085 7 53094883 53101575 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17022 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18502 nsv818504 7 53099915 53101874 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415717 S 112 0 1 "" NA19140 nsv517416 7 53099915 53104713 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv654417,nssv689595,nssv677007,nssv651959,nssv685499,nssv659232,nssv655576,nssv664131,nssv676970,nssv658699,nssv652495,nssv681541,nssv685700,nssv658003,nssv656988,nssv684413,nssv656369,nssv676092,nssv663909,nssv653221,nssv690421,nssv690803,nssv671631,nssv666661,nssv661031,nssv675804,nssv677884 M 2026 0 27 "" dgv2081e1 7 53107233 53259225 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv4498,esv41 M 271 0 0 "" NA18552 nsv831003 7 53107338 53259225 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446125,nssv1446126,nssv1446127 M 95 2 1 "" nsv831005 7 53134832 53326078 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446128 S 95 0 1 "" nsv5747 7 53135878 53153598 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8374 S 9 0 1 "" NA12156 nsv5748 7 53213573 53239082 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8375 S 9 0 1 "" NA12156 nsv8086 7 53223343 53226286 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16171 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19240 dgv812n27 7 53229101 53364459 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv464457,nsv464454,nsv464455,nsv464451,nsv464453,nsv464458,nsv464460,nsv464462,nsv464452,nsv464459,nsv464456 M 1557 0 11 "" HGDP00041,HGDP00058,HGDP00098,HGDP00338,HGDP00407,HGDP00567,HGDP00614,HGDP00643,HGDP00738,HGDP00876,HGDP01172 nsv8087 7 53229357 53239001 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17052 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18502 nsv442047 7 53229811 53240384 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv516296 7 53234895 53364459 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv652730,nssv684944,nssv690964,nssv668796,nssv670215,nssv683934,nssv684112,nssv680280,nssv652265 M 2026 0 9 "" esv32580 7 53235276 53357363 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv95501 S 51 0 1 "" 21847 esv2752159 7 53249866 53362000 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6985028,essv6990063,essv6985027 M 771 0 1 "" BEC_820 dgv813n27 7 53293069 53364459 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv464467,nsv464470,nsv464473,nsv464469,nsv464471,nsv464463,nsv464464,nsv464466,nsv464465,nsv464468 M 1557 0 10 "" 1780854288_A,1780862075_A,HGDP00090,HGDP00281,HGDP00309,HGDP00313,HGDP00601,HGDP00604,HGDP00682,NINDS_219 dgv814n27 7 53308318 53364459 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv464477,nsv464478,nsv464475,nsv464474,nsv464479,nsv464476 M 1557 0 6 "" HGDP00013,HGDP00015,HGDP00140,HGDP00364,HGDP00376,HGDP00607 nsv5749 7 53397302 53476410 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10544,nssv3529,nssv6127 M 9 3 0 "" NA12156,NA12878,NA18956 nsv509197 7 53424278 53428774 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619483 S 4 1 0 "" NA10860 nsv521644 7 53428982 53432079 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698264 S 2026 0 1 "" nsv831006 7 53543621 53704483 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446130 S 95 0 1 "" nsv518399 7 53563619 53568904 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695829 S 2026 0 1 "" nsv365836 7 53626377 53632260 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384414 M 24 "" nsv522664 7 53650871 53652988 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv706066 S 2026 0 1 "" dgv2082e1 7 53749523 53910569 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv4219,esv465 M 271 0 0 "" NA18603 nsv8088 7 53752626 53757726 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14632 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18942 nsv8089 7 53869183 53873429 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15468 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18564 nsv507393 7 53897059 53903059 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621877 S 4 1 0 "" NA10860 nsv437548 7 53951321 53971257 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467429 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19208 nsv5750 7 53952470 53977657 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8376 S 9 0 1 "" NA12156 nsv442048 7 53959613 53965429 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv517010 7 53962712 53963298 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv666860,nssv657567,nssv678799,nssv664149,nssv689320,nssv671632,nssv654235,nssv688942,nssv665483,nssv662784,nssv690874,nssv660313,nssv653606,nssv663094,nssv681093,nssv677289,nssv655103,nssv665978,nssv664960,nssv658630,nssv665505,nssv655799,nssv690115 M 2026 0 23 "" nsv818505 7 53962712 53963298 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417883,nssv1417880 M 112 0 2 "" NA18852,NA18854 nsv528950 7 54020746 54058327 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705644 S 2026 1 0 "" nsv525050 7 54023698 54028838 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701095 S 2026 1 0 "" nsv522755 7 54028838 54058327 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698394 S 2026 0 1 "" nsv526772 7 54037915 54058327 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703124 S 2026 0 1 "" dgv815n27 7 54039796 54186817 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv464482,nsv464481,nsv464480 M 1557 3 0 "" HGDP00066,HGDP00157,HGDP00210 nsv7397 7 54041204 54184651 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2650,nssv9712,nssv9711,nssv11143,nssv10545,nssv9440,nssv9439,nssv3530,nssv11144,nssv3531 M 9 0 0 "" NA12878,NA15510,NA18507,NA18517,NA18555,NA18956 nsv508454 7 54048145 54090039 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618810 S 4 0 1 "" NA10860 nsv510958 7 54048145 54169989 OTHER Inversion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621598,nssv624315 M 4 0 0 "" NA15510,NA18994 nsv293 7 54054113 54130871 OTHER Inversion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv293 S 1 0 0 "" NA15510 nsv522593 7 54080889 54138667 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705983 S 2026 1 0 "" nsv294 7 54100011 54166468 OTHER Inversion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv294 S 1 0 0 "" NA15510 nsv831007 7 54100372 54253483 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446131 S 95 1 0 "" nsv510084 7 54213059 54219059 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621309,nssv618260 M 4 0 2 "" CHM,NA15510 nsv5751 7 54269271 54300200 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10546 S 9 1 0 "" NA18956 nsv366899 7 54591358 54591358 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv385477 M 24 "" nsv518304 7 54797610 54810968 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695735 S 2026 1 0 "" nsv5752 7 54837233 54882151 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8377 S 9 0 1 "" NA12156 nsv528853 7 54839328 54862624 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705532 S 2026 0 1 "" nsv5753 7 54887225 54912746 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8378 S 9 1 0 "" NA12156 nsv515544 7 54981070 54983846 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv663867,nssv664419 M 2026 0 2 "" nsv366872 7 55008733 55009548 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv385450 M 24 "" nsv5755 7 55051585 55078840 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2651 S 9 0 1 "" NA18555 dgv233n6 7 55060953 55063285 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv365389,nsv366210 M 24 "" nsv365474 7 55079660 55079724 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384052 M 24 "" nsv818506 7 55253210 55257042 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418379,nssv1417532 M 112 2 0 "" NA10847,NA18968 nsv469822 7 55404489 55567141 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649843 M 265 0 0 Samples from several populations that are part of the HapMap project. "" nsv517559 7 55429290 55436066 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv687947,nssv652356,nssv696020,nssv674549,nssv676766,nssv677778,nssv674428,nssv676883,nssv666770,nssv692860,nssv693843,nssv672252 M 2026 0 12 "" nsv469612 7 55526603 55650372 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649536 M 265 0 0 Samples from several populations that are part of the HapMap project. "" nsv510959 7 55601860 55645690 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624316 S 4 0 0 "" NA18994 nsv365792 7 55764447 55769798 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384370 M 24 "" nsv526294 7 55945698 56396839 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702575 S 2026 1 0 "" nsv5756 7 55977873 56021053 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2652,nssv3532 M 9 0 2 "" NA12878,NA18555 nsv508455 7 55986756 56031310 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622574 S 4 0 1 "" NA18994 nsv831008 7 56019984 56177316 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446132 S 95 1 0 "" nsv510960 7 56033650 56232089 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622381 S 4 0 0 "" NA10860 esv33366 7 56092054 56092260 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98842 S 51 1 0 "" 21606 esv2752160 7 56099000 57137846 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6984584,essv6984583,essv6984582,essv6984581,essv6987628 M 771 1 0 "" BEC_720 nsv509198 7 56166373 56232089 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623507,nssv620879 M 4 2 0 "" NA15510,NA18994 nsv5757 7 56202593 56236084 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2653,nssv633,nssv6129,nssv10548,nssv11146,nssv3533,nssv6128,nssv6130,nssv634,nssv4981,nssv4979,nssv2760,nssv4980 M 9 7 0 "" NA12156,NA12878,NA15510,NA18555,NA18956,NA19129,NA19240 nsv295 7 56212434 56213134 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv295 S 1 1 0 "" NA15510 nsv8090 7 56286086 56546732 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15137,nssv15157,nssv15205,nssv14874,nssv15538,nssv17391,nssv17323,nssv14822,nssv17337,nssv16201 M 31 0 10 Samples from several populations that are part of the HapMap project. "" NA07029,NA11830,NA18504,NA18563,NA18860,NA18975,NA18980,NA19132,NA19144,NA19240 nsv831009 7 56340838 56528522 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446133 S 95 0 1 "" nsv5758 7 56411430 56479542 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4982,nssv635,nssv8380 M 9 0 3 "" NA12156,NA19129,NA19240 nsv508456 7 56418795 56438540 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618811 S 4 0 1 "" NA10860 nsv527305 7 56454041 56480386 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703725 S 2026 0 1 "" nsv5759 7 56508034 56554684 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4983,nssv6131,nssv3534,nssv636 M 9 0 4 "" NA12156,NA12878,NA19129,NA19240 nsv441949 7 56536322 56543023 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" esv33588 7 56538430 56542366 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98801,essv92890 M 51 0 2 "" 21606,21939 nsv471639 7 56556513 56739694 CNV Gain+Loss Sharp et al 2005 15918152 BAC_aCGH,FISH Eichler Segmental Duplication BAC array nssv549214,nssv549213,nssv549211,nssv549216,nssv549208,nssv549215,nssv549220,nssv549218,nssv549209,nssv549221,nssv549212,nssv549210,nssv549217,nssv549219 M 48 11 3 "" JK1051,JK1061,NA10469,NA10471,NA10473,NA10495,NA11323,NA11521,NA11523,NA15726,NA17014,NA17020,NA17059,P86GA nsv831010 7 56574018 56717456 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446134 S 95 0 1 "" nsv8092 7 56613570 56628936 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17367 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19132 nsv509199 7 56622985 56701722 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620880,nssv623508 M 4 2 0 "" NA15510,NA18994 nsv831011 7 56624162 56759445 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446135 S 95 0 1 "" nsv5760 7 56641495 56680701 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2655,nssv637,nssv3535,nssv10549,nssv9902,nssv6132,nssv4984 M 9 7 0 "" NA12156,NA12878,NA18507,NA18555,NA18956,NA19129,NA19240 nsv8093 7 56649103 56652228 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15726,nssv15225 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA10863,NA18537 nsv8094 7 56652228 56672252 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15146,nssv18330,nssv17112,nssv15167,nssv14149,nssv15929,nssv17451,nssv16238,nssv15568 M 31 9 0 Samples from several populations that are part of the HapMap project. "" NA12155,NA18502,NA18563,NA18572,NA18860,NA19007,NA19144,NA19173,NA19221 nsv509200 7 56927254 56942133 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618065,nssv620881,nssv623509,nssv619484 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv7399 7 56939554 62435926 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6135,nssv2656,nssv6134,nssv9713,nssv9714,nssv639,nssv2658 M 9 0 0 "" NA12156,NA18507,NA18555,NA19240 nsv8095 7 56956139 56957913 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15498 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18564 nsv464484 7 57019323 57400460 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540399 S 1557 1 0 "" 1798860210_A nsv520659 7 57019323 57678760 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv674395,nssv704857,nssv679133,nssv673625,nssv683032,nssv704858 M 2026 6 0 "" esv2752161 7 57086490 57730637 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6982965,essv6982964,essv6988607,essv6982963 M 771 1 0 "" BEC_529 nsv507394 7 57094017 57100017 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621878 S 4 1 0 "" NA10860 nsv365728 7 57188916 57189904 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384306 M 24 "" nsv5761 7 57202860 57247759 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8381 S 9 0 1 "" NA12156 nsv296 7 57268754 57294221 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv296 S 1 1 0 "" NA15510 nsv5762 7 57268754 57298453 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv11147,nssv9903,nssv4985,nssv2657,nssv640,nssv10550,nssv3536,nssv6136,nssv9441 M 9 9 0 "" NA12156,NA12878,NA15510,NA18507,NA18517,NA18555,NA18956,NA19129,NA19240 nsv509201 7 57286792 57289856 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619485,nssv623510 M 4 2 0 "" NA10860,NA18994 esv2752162 7 57286821 57730637 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6985492,essv6981144,essv6981145,essv6981143 M 771 1 0 "" BEC_358 dgv816n27 7 57299458 57450487 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv464485,nsv464487 M 1557 2 0 "" HGDP00964,HGDP01245 dgv2083e1 7 57307684 57347793 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv19322,esv1205 M 271 0 0 "" NA12872 esv2752163 7 57307684 57423200 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6985526,essv6981278,essv6981279 M 771 1 0 "" BEC_376 nsv464486 7 57309598 57400460 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540401 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00945 dgv2084e1 7 57376181 57770231 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv890,essv18905,esv501,essv11004 M 271 0 0 "" NA12717,NA19000,NA19143 nsv433384 7 57443942 57839708 CNV Gain Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463265 S 9 1 0 Samples from several populations that are part of the HapMap project. "" NA19240 nsv520877 7 57450487 57697041 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697663 S 2026 0 1 "" nsv5763 7 57477509 57509961 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10551 S 9 1 0 "" NA18956 nsv442049 7 57508592 57530673 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv8096 7 57509390 57526594 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15543,nssv14904,nssv17353,nssv17843,nssv15255 M 31 0 5 Samples from several populations that are part of the HapMap project. "" NA07048,NA18504,NA18537,NA18972,NA18975 essv10510 7 57518708 57689510 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19143 essv3929 7 57560575 57668731 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18970 nsv818507 7 57600188 57697041 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418160 S 112 1 0 "" NA19143 essv12019 7 57611532 57678760 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19141 nsv8097 7 57634979 57649155 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17142,nssv17481,nssv18360 M 31 3 0 Samples from several populations that are part of the HapMap project. "" NA18502,NA18860,NA19221 nsv442050 7 57650700 57734604 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv5764 7 57656568 57691107 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2761 S 9 1 0 "" NA18555 nsv8098 7 57661027 57668157 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17397,nssv17172 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18502,NA19132 nsv818508 7 57678760 57697041 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416844,nssv1416845 M 112 2 0 "" NA19238,NA19240 nsv8099 7 57687263 57725256 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17511,nssv17202,nssv18390,nssv16231 M 31 4 0 Samples from several populations that are part of the HapMap project. "" NA18502,NA18860,NA19221,NA19240 nsv523744 7 60882694 61297045 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699560 S 2026 0 1 "" dgv2085e1 7 60893982 61087258 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv14385,essv3186,essv6734,essv4745,essv679,essv17054,essv2801,essv24249,essv14870,essv8461,essv12472,essv22033,essv1021,essv18072,essv5540,essv22914,essv14647,essv19639,essv10577,essv9976,essv7400,essv12769,essv12244,essv7557,essv12537,essv6176,essv13696,essv16126,essv10622,essv2997,essv15419,essv7319,essv22649,essv18394,essv9589,essv11039,essv10141,essv8942,essv12307,essv11710,essv14519,essv10233,essv17460,essv10395,essv9899,essv18855,essv22430,essv14268,essv7084,essv16694,essv16361,essv20387,essv13477,essv8783,essv16838,essv4023,essv16034,essv6289,essv23489,essv11579,essv13078,essv21725,essv17659,essv13876,essv19281,essv17318,essv11450,essv13037,essv9147,essv114,essv14079,essv21375,essv21233,essv15310,essv5711,essv9236,essv9805,essv14999,essv9431,essv10876,essv7218,essv17157,essv18327,essv22002,essv17708,essv15698,essv16739,essv8369,essv21535,essv18292,essv12411,essv11271,essv18739,essv13642,essv14780,essv1432,essv14136,essv22386,essv5806,essv13559,essv22816,essv6022,essv8286,essv2091,essv16197,essv12632,essv1210,essv460,essv13133,essv2892,essv788,essv6991,essv11951,essv1153,essv13789,essv10762,essv10320,essv6713,essv388,essv11848 M 271 0 0 "" NA07034,NA10830,NA10838,NA10846,NA10856,NA10861,NA11830,NA11881,NA11994,NA11995,NA12004,NA12043,NA12145,NA12154,NA12155,NA12248,NA12249,NA12740,NA12751,NA12752,NA12760,NA12872,NA12873,NA12874,NA12875,NA18500,NA18501,NA18502,NA18506,NA18507,NA18508,NA18516,NA18522,NA18523,NA18529,NA18532,NA18537,NA18545,NA18547,NA18562,NA18566,NA18570,NA18571,NA18593,NA18608,NA18612,NA18620,NA18623,NA18635,NA18636,NA18852,NA18854,NA18855,NA18856,NA18857,NA18858,NA18859,NA18860,NA18861,NA18862,NA18863,NA18870,NA18871,NA18872,NA18912,NA18914,NA18944,NA18949,NA18951,NA18952,NA18953,NA18956,NA18964,NA18968,NA18971,NA18974,NA18975,NA18981,NA18987,NA19005,NA19093,NA19098,NA19099,NA19100,NA19101,NA19102,NA19103,NA19119,NA19127,NA19128,NA19130,NA19138,NA19140,NA19141,NA19142,NA19143,NA19145,NA19152,NA19153,NA19154,NA19159,NA19160,NA19161,NA19171,NA19172,NA19173,NA19192,NA19193,NA19194,NA19200,NA19202,NA19203,NA19204,NA19205,NA19207,NA19208,NA19221,NA19222,NA19238,NA19240 dgv2086e1 7 60893982 62556415 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv13220,essv12788,esv691,essv24973,essv24350,essv18945 M 271 0 0 "" NA10839,NA12005,NA19120 nsv831012 7 60900893 61085935 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446150,nssv1446145,nssv1446148,nssv1446147,nssv1446146,nssv1446149,nssv1446161,nssv1446138,nssv1446157,nssv1446152,nssv1446155,nssv1446156,nssv1446154,nssv1446153,nssv1446160,nssv1446136,nssv1446137,nssv1446158,nssv1446159,nssv1446144,nssv1446139,nssv1446142,nssv1446143,nssv1446141 M 95 19 5 "" dgv29n14 7 60914297 61032517 CNV Gain Cooper et al 2008 18776910 SNP_array nsv433385,nsv433386 M 9 2 0 "" NA12156,NA18517 nsv433389 7 60914297 61118129 CNV Gain Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463270 S 9 1 0 Samples from several populations that are part of the HapMap project. "" NA19240 nsv831013 7 61053523 61082414 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446175,nssv1446182,nssv1446174,nssv1446181,nssv1446177,nssv1446176,nssv1446180,nssv1446178,nssv1446170,nssv1446172,nssv1446171,nssv1446169,nssv1446166,nssv1446179,nssv1446165,nssv1446164,nssv1446163,nssv1446168,nssv1446167 M 95 19 0 "" dgv225e55 7 61076556 62350279 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv34858,esv34425,esv34968,esv35096 M 771 4 0 "" NA10839,NA12005,NA19116,NA19120 esv2752164 7 61076556 62745400 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6981186,essv6985509,essv6981187,essv6981185 M 771 1 0 "" BEC_361 nsv437549 7 61205259 61359774 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467430 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19208 dgv2087e1 7 61259930 62499664 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv8228,essv12041 M 271 0 0 "" NA19116 nsv441959 7 61283852 61295337 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv433390 7 61287745 61357480 CNV Gain Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463271 S 9 1 0 Samples from several populations that are part of the HapMap project. "" NA18956 dgv28e196 7 61331967 62144527 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array esv2422384,esv2422387 M 181 2 0 "" ND01692,ND04991 nsv469730 7 61413866 61600118 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649751 M 265 0 0 Samples from several populations that are part of the HapMap project. "" nsv831014 7 61420370 61604430 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446188,nssv1446183,nssv1446186,nssv1446187 M 95 0 4 "" nsv516283 7 61456371 62149168 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv667780,nssv656178,nssv662440,nssv667330,nssv656484,nssv704130,nssv700468,nssv678832,nssv692105,nssv672879,nssv683935,nssv675977,nssv657031,nssv680590,nssv704745,nssv669141,nssv672500,nssv702213,nssv655292,nssv701039,nssv657880,nssv668236,nssv705472,nssv692013,nssv686997,nssv700300,nssv681562,nssv677631,nssv660660 M 2026 9 20 "" nsv818509 7 61456371 62179620 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416645,nssv1416646 M 112 2 0 "" NA19116,NA19120 nsv8100 7 61474843 62139563 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16268,nssv15959,nssv15528,nssv15197,nssv15586,nssv14179,nssv15187,nssv17232,nssv14852,nssv17262,nssv18014,nssv13961,nssv16149,nssv15574 M 31 1 12 Samples from several populations that are part of the HapMap project. "" NA07029,NA10839,NA11830,NA12155,NA12740,NA12872,NA18502,NA18517,NA18552,NA18563,NA18564,NA18572,NA19173 dgv130n17 7 61588873 61611421 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437018,nsv437017 M 60 0 2 "" NA06991,NA12802 nsv437985 7 61596132 61604076 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv468907,nssv468903,nssv468905,nssv468902,nssv468906,nssv468904 M 269 0 6 Samples from several populations that are part of the HapMap project. "" NA06985,NA06991,NA07055,NA10859,NA12802,NA12815 essv17998 7 61601581 62350279 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12005 nsv469729 7 61655264 61866121 CNV Gain Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649750 M 265 2 0 Samples from several populations that are part of the HapMap project. "" nsv818510 7 61797425 61882439 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416943 S 112 0 1 "" NA19138 dgv817n27 7 61848856 62179620 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv464508,nsv464497,nsv464499,nsv464504,nsv464489,nsv464509,nsv464500,nsv464502,nsv464512,nsv464511,nsv464501,nsv464503,nsv464510,nsv464507 M 1557 14 0 "" 1780846005_A,1780854009_A,1780862404_A,1780862480_A,1782681024_A,1798860192_A,HGDP00208,HGDP00338,HGDP00647,HGDP00653,HGDP00747,HGDP01258,NINDS_46,NINDS_98 nsv464513 7 61857697 62958965 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540420 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00551 nsv471640 7 61858340 62068043 CNV Gain Sharp et al 2005 15918152 BAC_aCGH,FISH Eichler Segmental Duplication BAC array nssv551189 S 48 1 0 "" NA15733 nsv818512 7 62059472 62071323 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418161 S 112 0 1 "" NA19143 essv19330 7 62089596 62150336 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12872 essv17309 7 62132321 62553525 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18856 nsv442051 7 62133498 62150566 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv8101 7 62153637 62193317 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15558,nssv14209,nssv15227 M 31 0 3 Samples from several populations that are part of the HapMap project. "" NA18563,NA18564,NA18572 nsv528613 7 62179620 62379487 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705239 S 2026 1 0 "" nsv8104 7 62206024 62250019 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15616,nssv14239,nssv15588,nssv18420,nssv15257 M 31 1 4 Samples from several populations that are part of the HapMap project. "" NA18552,NA18563,NA18564,NA18572,NA19221 nsv8105 7 62253736 62255253 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16179,nssv15285,nssv15573,nssv15786,nssv17457,nssv17383,nssv18044,nssv17873,nssv15618,nssv14882 M 31 9 1 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10863,NA12740,NA18504,NA18517,NA18537,NA18564,NA18972,NA19132 nsv8106 7 62258497 62259003 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18134 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18517 nsv818513 7 62271881 62282682 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416357 S 112 1 0 "" NA18856 nsv8107 7 62272495 62274486 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17443 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18504 nsv8108 7 62272898 62279885 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15005 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA10847 esv33023 7 62274487 62279785 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98377 S 51 0 1 "" 22352 nsv8109 7 62298165 62298671 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18164 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18517 nsv8110 7 62301915 62303429 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15648,nssv15816,nssv16209,nssv14912,nssv15315,nssv17903,nssv17487,nssv15603,nssv18194,nssv17473 M 31 9 1 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10863,NA12740,NA18504,NA18517,NA18537,NA18564,NA18972,NA19132 nsv8111 7 62307145 62352387 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15678,nssv18480,nssv15646,nssv14269,nssv15287 M 31 1 4 Samples from several populations that are part of the HapMap project. "" NA18552,NA18563,NA18564,NA18572,NA19221 nsv8112 7 62395483 62399864 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15708 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18564 nsv8113 7 62405473 62411303 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17292 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18502 nsv8115 7 62423322 62431709 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18224,nssv17322,nssv14942,nssv16298,nssv13991,nssv15217 M 31 0 6 Samples from several populations that are part of the HapMap project. "" NA07029,NA11830,NA12155,NA12872,NA18502,NA18517 esv32550 7 62429623 62694029 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98748,essv95167,essv97985,essv96341,essv94241 M 51 1 4 "" 21606,21721,22259,22371,22394 nsv8116 7 62552316 62553886 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14299 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18572 nsv5766 7 62554997 62588238 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3537 S 9 1 0 "" NA12878 nsv366726 7 62556903 62556903 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv385304 M 24 "" nsv366298 7 62592503 62593767 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384876 M 24 "" nsv5767 7 62647964 62694702 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2659,nssv6137 M 9 0 2 "" NA12156,NA18555 nsv5768 7 62648989 62690519 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3538,nssv10552,nssv9904,nssv4986,nssv641,nssv2660 M 9 6 0 "" NA12878,NA18507,NA18555,NA18956,NA19129,NA19240 nsv8117 7 62650114 62673262 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15989,nssv17352,nssv15317,nssv18510,nssv15598,nssv17541,nssv15738,nssv14329,nssv16328 M 31 9 0 Samples from several populations that are part of the HapMap project. "" NA12155,NA18502,NA18563,NA18564,NA18572,NA18860,NA19144,NA19173,NA19221 nsv366695 7 62655002 62656680 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv385273 M 24 "" nsv365935 7 62656961 62658543 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384513 M 24 "" nsv8118 7 62667763 62685051 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17503 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18504 nsv8119 7 62685051 62700613 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15247,nssv15628 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA11830,NA19144 nsv524380 7 62791036 62805228 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700295 S 2026 0 1 "" nsv818514 7 63017744 63028934 CNV Gain+Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417638,nssv1417627 M 112 1 1 "" NA12234,NA12264 nsv522412 7 63043775 63333859 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695195 S 2026 0 1 "" esv2422405 7 63153889 64076491 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161560 S 181 1 0 "" ND02214 nsv464515 7 63188500 63227536 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540421 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00945 nsv518721 7 63250969 63258038 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694266 S 2026 0 1 "" nsv464516 7 63277073 63325388 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540422 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01193 nsv5769 7 63294579 63328253 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8382 S 9 1 0 "" NA12156 nsv464518 7 63325388 63951054 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540424 S 1557 1 0 "" NINDS_207 esv33896 7 63712135 63712326 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97983 S 51 1 0 "" 22259 nsv508457 7 63730672 63835262 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618812 S 4 0 1 "" NA10860 dgv226e55 7 63789972 64687746 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv2752166,esv2752165 M 771 0 2 "" BEC_666,BEC_814 nsv510085 7 63814874 63820874 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621311,nssv624033,nssv618261 M 4 0 3 "" CHM,NA15510,NA18994 nsv517778 7 63906476 64770971 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv680827,nssv672166,nssv681658,nssv673099,nssv685971,nssv665210,nssv658834,nssv693586,nssv659343,nssv675978,nssv692337,nssv685895,nssv678741,nssv671794,nssv693987,nssv653222 M 2026 4 12 "" dgv227e55 7 63922536 64512781 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv2752167,esv34341 M 771 0 2 "" NA11840,SPC_13 dgv2088e1 7 63995424 64818001 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv24422,essv19416,essv25184,esv637,essv3098 M 271 0 0 "" NA11840,NA12707,NA18969 nsv8120 7 63995676 64011134 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15176,nssv18540,nssv16261,nssv15235,nssv15658,nssv14662,nssv17517,nssv17382,nssv14359,nssv15347,nssv15035,nssv15798,nssv16019 M 31 13 0 Samples from several populations that are part of the HapMap project. "" NA10847,NA18502,NA18563,NA18564,NA18572,NA18942,NA18980,NA19007,NA19132,NA19144,NA19173,NA19221,NA19240 dgv228e55 7 64001544 64512800 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv2752168,esv2752169 M 771 2 0 "" BEC_508,SPC_163 nsv8121 7 64026367 64046571 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15277,nssv15345,nssv15846,nssv14470,nssv15230,nssv16291,nssv15265,nssv15377,nssv15676,nssv17547,nssv17571,nssv14692,nssv14021,nssv16049,nssv15688,nssv14389,nssv18570,nssv16358,nssv16239,nssv15828,nssv15604,nssv17442,nssv14934,nssv17533 M 31 0 24 Samples from several populations that are part of the HapMap project. "" NA10839,NA10863,NA11830,NA12155,NA12740,NA12802,NA12872,NA18502,NA18504,NA18537,NA18552,NA18563,NA18564,NA18572,NA18853,NA18860,NA18942,NA18975,NA18980,NA19132,NA19144,NA19173,NA19221,NA19240 nsv469565 7 64034761 64257545 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649677 M 265 0 0 Samples from several populations that are part of the HapMap project. "" nsv441970 7 64038215 64039848 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv8122 7 64053642 64080686 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15718,nssv18254,nssv17563 M 31 0 3 Samples from several populations that are part of the HapMap project. "" NA18504,NA18517,NA19144 nsv7400 7 64053666 64614058 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6138,nssv9905,nssv9715,nssv643 M 9 0 0 "" NA12156,NA18507,NA19240 esv33731 7 64054008 64620511 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98872,essv96763,essv97184,essv97152,essv97790,essv99390 M 51 1 5 "" 21606,21659,22075,22278,22335 esv2422276 7 64076491 64262176 CNV Deletion Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161548 S 181 0 1 "" ND01675 dgv818n27 7 64123711 64400331 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv464532,nsv464523,nsv464527,nsv464533 M 1557 0 4 "" 1780854302_A,1787431195_A,HGDP00876,HGDP01399 dgv819n27 7 64123711 64400331 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv464531,nsv464522,nsv464520,nsv464526,nsv464519,nsv464521,nsv464524,nsv464525 M 1557 8 0 "" 1780862229_A,1782681169_A,1798860306_A,HGDP00214,HGDP00382,HGDP00675,HGDP01172,HGDP01239 nsv5770 7 64134448 64179884 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10553,nssv4987 M 9 0 2 "" NA18956,NA19129 dgv8n29 7 64139204 64336819 CNV Complex Locke et al 2006 16826518 BAC_aCGH nsv469616,nsv469574 M 265 0 0 "" nsv464529 7 64141694 64230468 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540435 S 1557 0 1 "" 1780854039_A nsv464530 7 64141694 64288870 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540436 S 1557 0 1 "" 1780862126_A nsv831016 7 64149128 64292262 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446189 S 95 0 1 "" nsv8123 7 64160143 64166309 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15634,nssv16269,nssv18600,nssv17601,nssv15307,nssv14722,nssv16388,nssv15858 M 31 8 0 Samples from several populations that are part of the HapMap project. "" NA10839,NA11830,NA12155,NA12740,NA18564,NA18860,NA18942,NA19221 nsv8124 7 64166309 64170662 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16079 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19173 dgv229e55 7 64172228 64687746 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv2752173,esv2752170,esv2752171,esv2752172 M 771 0 4 "" BEC_287,BEC_304,BEC_654,BEC_740 nsv464534 7 64206544 64385603 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540440 S 1557 0 1 "" NINDS_29 nsv509204 7 64360579 64406266 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619486,nssv623512,nssv620883 M 4 3 0 "" NA10860,NA15510,NA18994 nsv510961 7 64360579 64406266 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618657 S 4 0 0 "" CHM nsv5771 7 64380693 64402430 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv642,nssv10554,nssv3539 M 9 3 0 "" NA12878,NA18956,NA19240 nsv831017 7 64384198 64495088 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446190 S 95 1 0 "" nsv5772 7 64404751 64425737 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10555 S 9 1 0 "" NA18956 nsv469636 7 64424688 64515187 CNV Gain Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649562 M 265 4 0 Samples from several populations that are part of the HapMap project. "" dgv2089e1 7 64424689 64515187 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv17579,essv80,essv1373,essv19553,essv18748 M 271 0 0 "" NA12762,NA12864,NA12874,NA18991,NA19007 nsv471641 7 64424689 64515187 CNV Gain Sharp et al 2005 15918152 BAC_aCGH,FISH Eichler Segmental Duplication BAC array nssv549710,nssv549712,nssv549708,nssv549706,nssv549709,nssv549707,nssv549711 M 48 7 0 "" NA11521,NA15725,NA15730,NA16688,NA17015,NA17017,NA17020 dgv2090e1 7 64424689 64730827 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv3044,essv8161,essv1772,essv4241,essv21834,essv17805,essv2014 M 271 0 0 "" NA10831,NA11839,NA18603,NA18949,NA18981,NA18997,NA19206 nsv8126 7 64428756 64455921 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15206,nssv17593,nssv18284,nssv15748 M 31 0 4 Samples from several populations that are part of the HapMap project. "" NA18504,NA18517,NA19007,NA19144 nsv8127 7 64462999 64591899 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15664,nssv15407,nssv15367,nssv14500,nssv14111,nssv15918,nssv17607,nssv14479,nssv17661,nssv16351,nssv16169,nssv16139,nssv16329,nssv15236,nssv18344,nssv15706,nssv16448,nssv15290,nssv15266,nssv17653,nssv15375,nssv15694,nssv17631,nssv15002,nssv14449,nssv17502,nssv16478,nssv15888,nssv18660,nssv15337,nssv14842,nssv16299,nssv14964,nssv15260,nssv15736,nssv15876,nssv14812,nssv15467,nssv14530,nssv17577,nssv17623,nssv17472,nssv16321,nssv18314,nssv15325,nssv15295,nssv14972,nssv15808,nssv18630,nssv18374,nssv15906,nssv14051 M 31 0 27 Samples from several populations that are part of the HapMap project. "" NA07029,NA10839,NA10863,NA11830,NA12155,NA12740,NA12802,NA12872,NA18502,NA18504,NA18517,NA18537,NA18552,NA18563,NA18564,NA18572,NA18853,NA18860,NA18942,NA18975,NA18980,NA19007,NA19132,NA19144,NA19173,NA19221,NA19240 nsv510963 7 64464857 64582917 OTHER Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621599,nssv624317 M 4 0 0 "" NA15510,NA18994 nsv831018 7 64465603 64565479 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446192,nssv1446191 M 95 2 0 "" nsv8128 7 64689761 64730090 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15948,nssv15320,nssv17683,nssv14872,nssv15838,nssv15296,nssv17637,nssv16199,nssv18404,nssv15497,nssv17532,nssv15796,nssv15405,nssv15355,nssv15065,nssv14509,nssv18690,nssv16381 M 31 18 0 Samples from several populations that are part of the HapMap project. "" NA10847,NA18502,NA18504,NA18517,NA18537,NA18552,NA18563,NA18564,NA18572,NA18853,NA18942,NA18980,NA19007,NA19132,NA19144,NA19173,NA19221,NA19240 esv32788 7 64691827 64735325 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98131 S 51 1 0 "" 21772 nsv508458 7 65168372 65286789 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622575 S 4 0 1 "" NA18994 nsv507395 7 65192222 65198222 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617738 S 4 1 0 "" CHM esv32937 7 65287126 65288674 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv95055,essv96889,essv95529,essv92673 M 51 4 0 "" 21721,21817,21847,21944 nsv525524 7 65580699 65585453 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701658 S 2026 1 0 "" nsv517724 7 65584745 65585453 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv683516,nssv683936,nssv660141,nssv690517,nssv653011,nssv689208,nssv689738,nssv662441 M 2026 0 8 "" nsv5773 7 65679305 65710933 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10556 S 9 1 0 "" NA18956 nsv507396 7 65700343 65706343 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620383,nssv623011 M 4 2 0 "" NA15510,NA18994 essv3137 7 65845580 66163594 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18969 dgv2091e1 7 65845580 66303403 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv476,essv2029 M 271 0 0 "" NA18949 esv33855 7 65864096 65865690 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100716 S 51 0 1 "" 21656 esv33653 7 65938451 65952492 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101440,essv97466,essv96802,essv100962,essv98411 M 51 0 5 "" 21603,21616,21659,21693,22352 nsv831019 7 65960958 66164635 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446193 S 95 0 1 "" nsv5774 7 66019361 66041234 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4988,nssv3541 M 9 2 0 "" NA12878,NA19129 nsv509205 7 66031505 66060687 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623513 S 4 1 0 "" NA18994 nsv441983 7 66073479 66089382 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv2092e1 7 66143652 66303403 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv10009,essv17014 M 271 0 0 "" NA19099,NA19144 nsv8129 7 66179566 66210819 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18720,nssv15868,nssv15397,nssv14141,nssv14902,nssv15385,nssv17933,nssv16411,nssv17691 M 31 8 1 Samples from several populations that are part of the HapMap project. "" NA11830,NA12872,NA18860,NA18942,NA18972,NA18980,NA19144,NA19221,NA19240 nsv508460 7 66197635 66205704 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619989 S 4 0 1 "" NA15510 nsv510086 7 66227302 66233302 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621312 S 4 0 1 "" NA15510 nsv5775 7 66247834 66279485 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10557 S 9 1 0 "" NA18956 esv33458 7 66288148 66293594 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100701 S 51 0 1 "" 21656 esv33523 7 66299585 66403048 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99376 S 51 0 1 "" 22335 nsv469631 7 66322464 66480491 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649557 M 265 0 2 Samples from several populations that are part of the HapMap project. "" nsv366792 7 66367524 66371329 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv385370 M 24 "" nsv5777 7 66472243 66492987 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv644 S 9 1 0 "" NA19240 nsv5778 7 66599837 66621165 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2764 S 9 1 0 "" NA18555 nsv516986 7 66642274 66650859 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv684846,nssv653555,nssv682054,nssv651922,nssv662259,nssv690719,nssv691731,nssv698199 M 2026 0 8 "" nsv5779 7 66693914 66726821 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4990 S 9 1 0 "" NA19129 nsv366328 7 66710908 66719584 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384906 M 24 "" nsv520345 7 66795433 66796921 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv680364,nssv663095,nssv683603 M 2026 0 3 "" nsv366542 7 66872077 66872077 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv385120 M 24 "" nsv510087 7 66938703 66944703 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618262,nssv624035,nssv621313,nssv622136 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv515861 7 67469909 67470058 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv688488,nssv665051,nssv667871,nssv675076 M 2026 0 4 "" nsv831020 7 67483110 67618584 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446194 S 95 0 1 "" nsv5780 7 67878237 67912538 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv645 S 9 1 0 "" NA19240 nsv365879 7 67899023 67907307 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384457 M 24 "" nsv5781 7 67966348 67998778 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6139 S 9 1 0 "" NA12156 nsv365718 7 68307470 68307767 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384296 M 24 "" nsv5782 7 68391534 68436555 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8384 S 9 0 1 "" NA12156 nsv5783 7 68493259 68511411 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8385 S 9 0 1 "" NA12156 nsv831021 7 68566820 68809142 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446195 S 95 0 1 "" nsv5784 7 68778489 68813080 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3542 S 9 1 0 "" NA12878 dgv2093e1 7 68857155 69038812 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv196,essv10056 M 271 0 0 "" NA19099 nsv510088 7 69174963 69180963 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618263 S 4 0 1 "" CHM nsv528973 7 69331736 69337913 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705672 S 2026 0 1 "" nsv522876 7 69495093 69516630 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698531 S 2026 0 1 "" nsv464546 7 69516571 69544998 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540442 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00971 nsv519090 7 69530585 70516547 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696563 S 2026 1 0 "" nsv831022 7 69634002 69682830 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446197 S 95 0 1 "" nsv442052 7 69641929 69647322 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv230e55 7 69760500 69801712 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv2752175,esv2752176 M 771 2 0 "" BEC_400,SPC_88 dgv820n27 7 69766294 69808753 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv464553,nsv464549,nsv464554,nsv464552,nsv464547,nsv464551,nsv464548 M 1557 7 0 "" HGDP00522,HGDP00562,HGDP00730,HGDP00884,HGDP00891,HGDP01396,HGDP01400 nsv5785 7 69780225 69792292 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4991 S 9 1 0 "" NA19129 nsv464555 7 69780769 69815845 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540451 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00639 nsv508461 7 69808959 69887953 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622577,nssv618813,nssv617348 M 4 0 3 "" CHM,NA10860,NA18994 nsv7401 7 69826030 69920969 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6140,nssv3543,nssv6142,nssv2662,nssv3545 M 9 0 0 "" NA12156,NA12878,NA18555 nsv5786 7 69852393 69898778 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2661,nssv3544,nssv6141 M 9 0 3 "" NA12156,NA12878,NA18555 nsv8130 7 69865412 69871692 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17697,nssv16508,nssv14539,nssv15350,nssv16471,nssv15633,nssv16229,nssv15928,nssv17773,nssv15487,nssv17592,nssv14201,nssv16259,nssv15475,nssv18464,nssv15936,nssv15326,nssv15898,nssv18494,nssv15826,nssv17667,nssv16538,nssv16359,nssv15465,nssv15457,nssv17713,nssv15356,nssv17963,nssv18750,nssv17721,nssv14171,nssv16501,nssv16389,nssv15415,nssv17993,nssv17562 M 31 22 0 Samples from several populations that are part of the HapMap project. "" NA07048,NA10863,NA11830,NA12155,NA12740,NA12872,NA18502,NA18504,NA18517,NA18537,NA18552,NA18572,NA18853,NA18860,NA18972,NA18980,NA19007,NA19132,NA19144,NA19173,NA19221,NA19240 esv1914953 7 69865621 69883538 OTHER Inversion Feuk_et_al_2005 16254605 FISH,PCR Not Provided essv4491060 S 18 0 0 "" nsv441987 7 69865640 69870792 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv520190 7 69991247 69994922 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697271 S 2026 1 0 "" nsv516049 7 70471114 70724950 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv689776,nssv656421,nssv665884 M 2026 3 0 "" nsv5788 7 70570131 70597383 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3546 S 9 1 0 "" NA12878 nsv366955 7 70647204 70647204 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv385533 M 24 "" nsv831023 7 70888200 71032684 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446198 S 95 0 1 "" nsv527501 7 70978551 70994730 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703951 S 2026 0 1 "" nsv831024 7 71014000 71179901 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446199 S 95 0 1 "" nsv524800 7 71111515 71158753 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700792 S 2026 0 1 "" nsv464556 7 71185109 71262550 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540452 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00716 nsv528974 7 71258311 71282858 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705673 S 2026 0 1 "" nsv517305 7 71279583 71282858 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv659388,nssv681028,nssv678690,nssv654272 M 2026 0 4 "" dgv2094e1 7 71356121 71823049 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2538,essv2033,essv3103 M 271 0 0 "" NA18949,NA18969,NA19003 dgv2095e1 7 71356121 72320549 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv736,esv589 M 271 0 0 "" NA19003 nsv366857 7 71409447 71409502 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv385435 M 24 "" dgv2096e1 7 71427575 71712945 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv3608,essv939 M 271 0 0 "" NA18949,NA18969 nsv442053 7 71441856 71757791 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" esv33871 7 71442340 71753395 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv92734 S 51 0 1 "" 21944 dgv231e55 7 71451749 71712945 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv34488,esv34202 M 771 2 0 "" NA18949,NA18969 nsv365909 7 71478857 71479878 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384487 M 24 "" nsv5789 7 71481320 71515693 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv646 S 9 1 0 "" NA19240 nsv8131 7 71487606 71493277 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15032,nssv14994,nssv15966 M 31 0 3 Samples from several populations that are part of the HapMap project. "" NA07029,NA10863,NA18975 dgv821n27 7 71487692 71750322 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv464558,nsv464560,nsv464559,nsv464562 M 1557 4 0 "" 1780854179_A,1780862592_A,HGDP01277,NINDS_196 nsv520573 7 71487692 72194996 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv672719,nssv675188,nssv696688,nssv694046,nssv701501 M 2026 3 2 "" esv34349 7 71487692 72200171 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6978341,essv6978340 M 771 1 0 "" NA19003 nsv469716 7 71504972 71655516 CNV Gain Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649737 M 265 1 0 Samples from several populations that are part of the HapMap project. "" dgv62n64 7 71541341 71728216 CNV Gain Wang_et_al_2007 17921354 SNP_array nsv818515,nsv818516 M 112 2 0 "" NA18949,NA19003 dgv2097e1 7 71640441 71823049 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv16117,essv15677,essv16067 M 271 0 0 "" NA18501,NA18912,NA19100 dgv2098e1 7 71640441 72133581 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv9994,essv17974,essv8164,essv16958,essv23901,essv15367,essv16191,essv14797 M 271 0 0 "" NA12003,NA12814,NA18862,NA19099,NA19144,NA19159,NA19161,NA19206 dgv2099e1 7 71640441 72320549 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv17211,essv333 M 271 0 0 "" NA18971,NA19171 nsv469793 7 71659827 71823049 CNV Gain Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649814 M 265 1 0 Samples from several populations that are part of the HapMap project. "" nsv5790 7 71697418 71750471 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4992,nssv3547,nssv9716,nssv10558,nssv647,nssv2663 M 9 0 6 "" NA12878,NA18507,NA18555,NA18956,NA19129,NA19240 nsv8132 7 71711906 71721313 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15527 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18563 nsv366245 7 71714917 71720496 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384823 M 24 "" nsv8133 7 71770949 71789737 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17781,nssv18023,nssv16531,nssv17727,nssv14231,nssv14932,nssv15958 M 31 7 0 Samples from several populations that are part of the HapMap project. "" NA12872,NA18860,NA18942,NA18972,NA19132,NA19144,NA19240 nsv469664 7 71832687 71935062 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649593 M 265 0 6 Samples from several populations that are part of the HapMap project. "" nsv8134 7 71857860 71859934 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15505,nssv15125,nssv14560,nssv15663,nssv15996,nssv17803,nssv15495,nssv15062 M 31 0 8 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10847,NA10863,NA12802,NA18504,NA18537,NA18980 nsv831025 7 71881953 72060659 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446202,nssv1446201,nssv1446200 M 95 0 3 "" nsv8135 7 71921632 71975054 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15410,nssv16018,nssv17787,nssv16561,nssv18810,nssv15517,nssv17622,nssv16568,nssv15988,nssv15856,nssv17811,nssv15535,nssv15380,nssv15122,nssv17817,nssv16591 M 31 9 3 Samples from several populations that are part of the HapMap project. "" NA07029,NA11830,NA12155,NA18502,NA18552,NA18853,NA18860,NA18980,NA19132,NA19144,NA19221,NA19240 nsv509206 7 71930862 71930862 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619487 S 4 1 0 "" NA10860 nsv8137 7 72012906 72015144 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15024,nssv15693,nssv14590,nssv18524,nssv17847,nssv16449,nssv15386,nssv15978,nssv15525,nssv15152,nssv18840,nssv17833 M 31 12 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA12740,NA12802,NA18504,NA18517,NA18537,NA18564,NA18975,NA19007,NA19132,NA19221 nsv8138 7 72028799 72031462 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15555,nssv16026 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA10863,NA18537 nsv831027 7 72032613 72301047 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446203 S 95 0 1 "" nsv8139 7 72068742 72100140 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18870 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19221 nsv8140 7 72156657 72160293 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15585,nssv15723,nssv14620,nssv16056,nssv17863,nssv15182,nssv15155 M 31 0 7 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10847,NA10863,NA12802,NA18504,NA18537 nsv831028 7 72415294 72675576 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446204,nssv1446205 M 95 0 2 "" nsv469841 7 72480162 72629476 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649862 M 265 0 0 Samples from several populations that are part of the HapMap project. "" nsv831029 7 72611015 72811598 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446209,nssv1446208,nssv1446210,nssv1446206 M 95 0 4 "" nsv5791 7 72615501 72646555 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4993 S 9 1 0 "" NA19129 nsv5792 7 72773884 72802999 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8386 S 9 0 1 "" NA12156 nsv509207 7 72782540 72842694 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619488 S 4 1 0 "" NA10860 nsv518455 7 72837254 72860819 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695891 S 2026 0 1 "" nsv366821 7 72954974 72955466 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv385399 M 24 "" nsv464563 7 72961765 73096687 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540458 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00791 nsv831030 7 72970758 73109172 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446212,nssv1446211 M 95 2 0 "" nsv831031 7 73141937 73264896 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446221,nssv1446213,nssv1446215,nssv1446220,nssv1446214,nssv1446217,nssv1446216,nssv1446219,nssv1446223,nssv1446222,nssv1446224,nssv1446225,nssv1446227,nssv1446228,nssv1446226,nssv1446230 M 95 0 16 "" nsv831032 7 73233795 73429688 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446231 S 95 0 1 "" nsv5793 7 73259240 73302051 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2666 S 9 0 1 "" NA18555 nsv831033 7 73317260 73482782 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446232 S 95 0 1 "" dgv2100e1 7 73439084 74608092 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv17134,essv23954,essv416 M 271 0 0 "" NA12814,NA18971,NA19171 esv33268 7 73453619 73460322 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98698 S 51 1 0 "" 21606 nsv517573 7 73565665 73584702 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv687384,nssv683847,nssv686989,nssv662347,nssv654129,nssv664661,nssv654052,nssv674225,nssv665719,nssv651852,nssv685151,nssv687016,nssv662669 M 2026 0 13 "" nsv5794 7 73572319 73607753 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3548 S 9 1 0 "" NA12878 essv21300 7 73591606 74061552 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA10855 nsv8141 7 73597026 73600213 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18900 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19221 nsv509208 7 73618957 73687911 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620884 S 4 1 0 "" NA15510 nsv8142 7 73622444 73653838 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18930 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19221 nsv482102 7 73632960 73648309 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558463 S 1 1 0 "" KB1 nsv7402 7 73665383 73962962 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6145,nssv6143 M 9 0 0 "" NA12156 nsv8143 7 73698686 73700637 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14962,nssv15054,nssv15724,nssv15547,nssv15416,nssv18053 M 31 6 0 Samples from several populations that are part of the HapMap project. "" NA10839,NA11830,NA18942,NA18972,NA18975,NA19007 nsv482104 7 73751552 73766505 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558465 S 1 1 0 "" KB1 nsv8144 7 73752170 73780243 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17841,nssv18143,nssv15577,nssv16048,nssv17652 M 31 4 1 Samples from several populations that are part of the HapMap project. "" NA11830,NA18502,NA18860,NA18972,NA19144 nsv510089 7 73758008 73764008 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622137 S 4 0 1 "" NA10860 nsv8145 7 73821090 73937168 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15615,nssv16008,nssv17893,nssv17923,nssv15783,nssv16479,nssv18554,nssv16621,nssv15144,nssv18960,nssv16038,nssv14650,nssv14992,nssv15476,nssv15084,nssv15212,nssv17877 M 31 14 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA12740,NA12802,NA18504,NA18517,NA18537,NA18564,NA18942,NA18975,NA19007,NA19132,NA19221,NA19240 essv23365 7 73868900 74608092 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12750 nsv528969 7 73934540 76194696 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705668 S 2026 1 0 "" nsv831034 7 73958192 74100113 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446235,nssv1446234,nssv1446233 M 95 0 3 "" nsv8146 7 73965279 73966870 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16651,nssv16068,nssv15174,nssv15022,nssv15607,nssv16289,nssv15506,nssv15784,nssv18173 M 31 9 0 Samples from several populations that are part of the HapMap project. "" NA10839,NA11830,NA18564,NA18942,NA18972,NA18975,NA19007,NA19173,NA19240 nsv8148 7 74021551 74027374 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18990 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19221 nsv8149 7 74033868 74042989 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19020 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19221 nsv8150 7 74080268 74082931 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15645,nssv16116 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA10863,NA18537 nsv8151 7 74096630 74098865 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15813,nssv15675,nssv14680,nssv17953,nssv15242,nssv15536,nssv16509,nssv18584,nssv16128,nssv15204,nssv17907,nssv19050 M 31 12 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA12740,NA12802,NA18504,NA18517,NA18537,NA18564,NA18975,NA19007,NA19132,NA19221 nsv8152 7 74137741 74410404 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19080,nssv17682,nssv16598,nssv15637,nssv17871,nssv15565,nssv16078,nssv17937,nssv15470,nssv18203 M 31 9 1 Samples from several populations that are part of the HapMap project. "" NA11830,NA12155,NA18502,NA18853,NA18860,NA18972,NA18980,NA19132,NA19144,NA19221 nsv508462 7 74148455 74595286 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619990,nssv618814,nssv622578 M 4 0 3 "" NA10860,NA15510,NA18994 nsv8153 7 74160022 74515245 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15052,nssv15843,nssv16158,nssv14710,nssv15234,nssv17983,nssv16188,nssv17967,nssv16539,nssv15272,nssv16681,nssv18013,nssv15705,nssv19140,nssv18614,nssv15566,nssv15264 M 31 14 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA12740,NA12802,NA18504,NA18517,NA18537,NA18564,NA18942,NA18975,NA19007,NA19132,NA19221,NA19240 dgv2101e1 7 74410376 74608092 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv24309,essv12827,essv13690,essv8124,essv17637,essv13085,essv20038,essv13910,essv14082,essv21208,essv15294,essv9819,essv15640,essv11170,essv10277 M 271 0 0 "" NA07048,NA10856,NA11830,NA12753,NA18506,NA18852,NA18854,NA18861,NA18862,NA18863,NA18912,NA19119,NA19120,NA19206,NA19211 dgv2102e1 7 74410376 74952654 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv3005,essv15561,essv11640,essv10065,essv16955,essv16193,essv16125,essv17932,essv9650,essv23389 M 271 0 0 "" NA10854,NA12003,NA18913,NA18981,NA19099,NA19100,NA19137,NA19144,NA19154,NA19161 essv14753 7 74410376 76494030 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19159 nsv8154 7 74551132 74623426 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15302,nssv18233,nssv15560,nssv16628,nssv16801,nssv17901,nssv16658,nssv15655,nssv15595,nssv18057,nssv19170,nssv16741,nssv17997,nssv16688,nssv15667,nssv15332,nssv15530,nssv16198,nssv17712,nssv18293,nssv19200,nssv15625,nssv15697,nssv18027,nssv16168,nssv15727,nssv16138,nssv19230,nssv18263,nssv16711,nssv15500 M 31 10 2 Samples from several populations that are part of the HapMap project. "" NA07029,NA11830,NA12155,NA18502,NA18853,NA18860,NA18972,NA18980,NA19132,NA19144,NA19221,NA19240 nsv831035 7 74596259 74710216 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446241,nssv1446237,nssv1446239,nssv1446242,nssv1446244,nssv1446243,nssv1446238,nssv1446236 M 95 0 8 "" nsv8155 7 74626835 74632563 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15787 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA11830 nsv8156 7 74693968 74696302 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15185,nssv15362,nssv15735,nssv15873,nssv14800,nssv15685,nssv16146,nssv18043 M 31 0 8 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10847,NA10863,NA12802,NA18504,NA18537,NA18980 nsv365453 7 74730058 74730249 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384031 M 24 "" nsv8157 7 74765043 74789433 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15817,nssv18147,nssv16831,nssv17772,nssv19260,nssv15082,nssv14261,nssv15715,nssv18323,nssv16228,nssv17931 M 31 10 1 Samples from several populations that are part of the HapMap project. "" NA11830,NA12872,NA18502,NA18860,NA18942,NA18972,NA18980,NA19132,NA19144,NA19221,NA19240 nsv482105 7 74768950 74778279 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558466 S 1 1 0 "" KB1 nsv831036 7 74771608 74952654 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446245 S 95 0 1 "" nsv471445 7 74781721 74802045 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548296,nssv548298,nssv548297 M 3 "" nsv518028 7 74813213 75099103 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695438 S 2026 1 0 "" nsv523858 7 74817786 74821036 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699693 S 2026 0 1 "" nsv509209 7 74843187 74917445 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619490 S 4 1 0 "" NA10860 nsv509210 7 74956920 75033408 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619491 S 4 1 0 "" NA10860 nsv366198 7 74957894 74957952 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384776 M 24 "" nsv464564 7 74974322 75024756 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540459 S 1557 1 0 "" NINDS_147 nsv528166 7 74992695 75013864 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704715 S 2026 1 0 "" nsv527399 7 74995789 75024756 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703835 S 2026 1 0 "" nsv441991 7 74998834 75008889 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv515696 7 75005490 75013864 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv659459,nssv686150,nssv699828,nssv704636,nssv651998,nssv660530 M 2026 6 0 "" nsv818517 7 75005490 75015019 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415654,nssv1417041,nssv1417038,nssv1417040,nssv1415655 M 112 5 0 "" NA06994,NA07000,NA07029,NA10835,NA12249 nsv520650 7 75024756 75026213 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697537 S 2026 0 1 "" dgv2103e1 7 75208500 75447331 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv18175,essv13007 M 271 0 0 "" NA12057,NA18859 dgv2104e1 7 75208500 76494030 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv12298,essv24789,essv15722,essv9010,essv3888,essv24596,essv15302,essv14511,essv16258,essv19015 M 271 0 0 "" NA10860,NA11992,NA12005,NA18862,NA18994,NA19131,NA19132,NA19138,NA19161,NA19202 dgv2105e1 7 75318405 75447331 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv10226,essv6870,essv13517,essv9783 M 271 0 0 "" NA18605,NA18863,NA19152,NA19160 nsv5795 7 75357472 75388796 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10559 S 9 1 0 "" NA18956 nsv524453 7 75399790 75413700 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700386 S 2026 1 0 "" nsv366620 7 75426600 75426655 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv385198 M 24 "" nsv519194 7 75544062 75591414 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696678 S 2026 0 1 "" esv2422494 7 75560868 76258417 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161538 S 181 1 0 "" ND04903 nsv5796 7 75568140 75578482 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10560 S 9 1 0 "" NA18956 dgv232e55 7 75648618 76383242 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv34657,esv2752178,esv2752184,esv34614,esv34688 M 771 5 0 "" BEC_555,BEC_817,NA18859,NA19131,NA19161 dgv2106e1 7 75654171 76466493 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv10003,essv13249,essv14929,essv9813,essv10216,essv6876,essv13534,essv13024,essv17987,essv21360 M 271 0 0 "" NA10860,NA12005,NA18605,NA18859,NA18863,NA19099,NA19131,NA19132,NA19152,NA19160 dgv233e55 7 75657317 76464940 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv2752179,esv2752182 M 771 0 2 "" BEC_631,BEC_704 nsv7403 7 75675287 75933922 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4994,nssv6146,nssv648 M 9 0 0 "" NA12156,NA19129,NA19240 dgv2107e1 7 75682804 76356720 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv13298,essv200,essv12446,essv14417,essv16367,essv16561,essv22259,essv11317,essv13278,essv8067,essv13954,essv14024 M 271 0 0 "" NA11992,NA18862,NA18863,NA18994,NA19152,NA19160,NA19161,NA19193,NA19201,NA19202 dgv234e55 7 75690975 76210401 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv35079,esv2752180,esv34358,esv2752181,esv2752183,esv34344,esv34710 M 771 7 0 "" BEC_122,BEC_348,NA12005,NA18605,NA18862,NA18863,NA19152 dgv235e55 7 75690975 76210401 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv34492,esv34615 M 771 0 2 "" BEC_503,NA18994 nsv517634 7 75690975 76282092 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv667986,nssv674487,nssv687538,nssv670181,nssv668944,nssv667271,nssv679102,nssv665211,nssv666930,nssv659643,nssv659622,nssv667696,nssv674917,nssv685408,nssv675133,nssv666908,nssv662177,nssv686117,nssv682427,nssv664961,nssv692621,nssv663179,nssv666884,nssv658605,nssv682189,nssv664934,nssv679684,nssv682007,nssv689008,nssv667101,nssv676024,nssv661032,nssv686392,nssv659859,nssv668161,nssv692568,nssv673357,nssv682715,nssv662611,nssv669764,nssv674261,nssv676124,nssv654855,nssv657568,nssv685361,nssv655677,nssv675742,nssv690086,nssv684894,nssv655535,nssv657265,nssv690729,nssv689209,nssv675482,nssv677759,nssv671795,nssv652609,nssv665753,nssv667164,nssv691198,nssv664191,nssv657754,nssv685389,nssv671882,nssv661645,nssv676165,nssv680475,nssv690804,nssv677682,nssv655742,nssv671275,nssv662334,nssv681792,nssv672646,nssv677380,nssv693201,nssv652847,nssv681051,nssv693681,nssv656221 M 2026 76 4 "" esv33074 7 75707021 75789368 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98679,essv97219 M 51 2 0 "" 21606,22075 dgv21n31 7 75707830 75779002 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis nsv471342,nsv471479 M 3 "" nsv471446 7 75735623 75779963 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548299,nssv548302,nssv548301 M 3 "" nsv482106 7 75735623 75779963 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558467 S 1 1 0 "" KB1 nsv8159 7 75755488 75757353 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18644 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18517 nsv509211 7 75766498 75801080 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619492 S 4 1 0 "" NA10860 nsv510964 7 75766498 75829126 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618599 S 4 0 0 "" CHM nsv5797 7 75778414 75834984 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv649,nssv4995,nssv6147,nssv11148 M 9 0 4 "" NA12156,NA15510,NA19129,NA19240 dgv63n64 7 75781040 76282092 CNV Loss Wang_et_al_2007 17921354 SNP_array nsv818518,nsv818520 M 112 0 3 "" NA10860,NA11992,NA18994 nsv482107 7 75784396 75801848 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558468 S 1 1 0 "" KB1 nsv297 7 75787249 75827010 CNV Loss Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv297 S 1 0 1 "" NA15510 nsv8160 7 75789368 75818475 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16861,nssv18133,nssv15805,nssv16258,nssv15886,nssv19290,nssv16891,nssv14291,nssv17991,nssv15745,nssv15847,nssv15814,nssv14830,nssv15903,nssv17961,nssv18353,nssv15142,nssv18674,nssv16718,nssv15294,nssv16218 M 31 7 14 Samples from several populations that are part of the HapMap project. "" NA07048,NA10839,NA11830,NA12155,NA12802,NA12872,NA18504,NA18517,NA18552,NA18564,NA18860,NA18942,NA18972,NA18975,NA18980,NA19144,NA19221,NA19240 esv32726 7 75789714 75792267 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98881,essv100730,essv96776,essv95059,essv98255,essv94410,essv95592,essv92936,essv92779,essv98597,essv98045,essv98452,essv94261 M 51 4 9 "" 21606,21656,21659,21721,21772,21808,21841,21939,21944,22085,22259,22352,22394 dgv22n31 7 75792001 76453431 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis nsv471336,nsv471338,nsv471536 M 3 "" dgv64n64 7 75830279 76201863 CNV Gain Wang_et_al_2007 17921354 SNP_array nsv818521,nsv818519 M 112 5 0 "" NA19138,NA19159,NA19160,NA19161,NA19193 dgv822n27 7 75830279 76282092 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv464573,nsv464565,nsv464571,nsv464569,nsv464570,nsv464567 M 1557 0 6 "" 1780854202_A,1780862078_A,1780862196_A,1780862448_A,HGDP00750,HGDP01241 dgv823n27 7 75830279 76282092 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv464568,nsv464566 M 1557 2 0 "" HGDP00913,NINDS_20 nsv8161 7 75852510 75861496 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17802 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18502 dgv2108e1 7 75865795 76439826 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv13117,essv23341,essv13377,essv11063 M 271 0 0 "" NA12750,NA18859,NA19138,NA19159 nsv471447 7 75883955 75901271 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548304,nssv548305,nssv548303 M 3 "" esv2422423 7 75897466 76016715 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161502 S 181 1 0 "" ND02553 nsv510090 7 75903920 75909920 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624036 S 4 0 1 "" NA18994 essv5689 7 75914938 76137701 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18605 nsv437986 7 75919535 75929771 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv468909 S 269 0 1 Samples from several populations that are part of the HapMap project. "" NA18994 nsv437987 7 75945985 75956071 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv468910 S 269 0 1 Samples from several populations that are part of the HapMap project. "" NA12005 dgv824n27 7 75951717 76090973 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv464589,nsv464579,nsv464584,nsv464575,nsv464593,nsv464581,nsv464596,nsv464576,nsv464582,nsv464591,nsv464586,nsv464574,nsv464590,nsv464592,nsv464588,nsv464595,nsv464587,nsv464577,nsv464580,nsv464585,nsv464578 M 1557 21 0 "" HGDP00060,HGDP00454,HGDP00458,HGDP00469,HGDP00526,HGDP00665,HGDP00721,HGDP00733,HGDP00861,HGDP00891,HGDP00911,HGDP00917,HGDP00929,HGDP00933,HGDP00939,HGDP00943,HGDP01030,HGDP01031,HGDP01036,NINDS_191,NINDS_273 nsv441999 7 75970408 76194853 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" esv33529 7 75996199 76249021 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100719,essv99380 M 51 1 1 "" 21656,22335 nsv510091 7 76037628 76043628 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622138,nssv618264 M 4 0 2 "" CHM,NA10860 nsv433481 7 76060087 76065750 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463362 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA19240 esv2752185 7 76062226 76210401 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6983523,essv6988683 M 771 1 0 "" BEC_665 nsv5799 7 76066596 76090260 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9717 S 9 1 0 "" NA18507 nsv510092 7 76070923 76076923 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618265,nssv621314,nssv624037 M 4 0 3 "" CHM,NA15510,NA18994 essv19469 7 76074610 76212673 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12750 nsv437019 7 76075501 76093468 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv466900 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA10860 nsv526097 7 76076984 76471089 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702345 S 2026 1 0 "" nsv5800 7 76089840 76104402 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8388 S 9 0 1 "" NA12156 esv33336 7 76121488 76268038 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98731 S 51 1 0 "" 21606 nsv437020 7 76137954 76159238 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv466901 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA10860 nsv818523 7 76138234 76282092 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415964 S 112 1 0 "" NA12750 dgv2109e1 7 76168057 76494030 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv16092,essv10062,essv17007,essv8099,essv16006,essv3043,essv13841,essv15707,essv17901 M 271 0 0 "" NA12003,NA18501,NA18854,NA18912,NA18981,NA19099,NA19100,NA19144,NA19206 nsv8162 7 76173564 76177034 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15215,nssv15933,nssv15590,nssv16921,nssv14321,nssv16319,nssv16288,nssv16176,nssv15844,nssv16778 M 31 10 0 Samples from several populations that are part of the HapMap project. "" NA07048,NA10839,NA10847,NA10863,NA12155,NA12872,NA18853,NA19144,NA19173,NA19240 nsv8163 7 76190415 76192729 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18021 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18860 nsv831038 7 76242931 76418754 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446246 S 95 0 1 "" nsv5801 7 76276917 76357076 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2667,nssv4996 M 9 0 2 "" NA18555,NA19129 nsv8164 7 76280775 76347374 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18383,nssv16951,nssv17832,nssv18177,nssv15877,nssv16808,nssv15392,nssv14351,nssv16318,nssv15620,nssv19320,nssv15835,nssv18051,nssv19350,nssv15907 M 31 12 2 Samples from several populations that are part of the HapMap project. "" NA07029,NA11830,NA12155,NA12872,NA18502,NA18853,NA18860,NA18972,NA18980,NA19132,NA19144,NA19221,NA19240 nsv471448 7 76313448 76327006 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548308,nssv548307,nssv548306 M 3 "" nsv482108 7 76313448 76327006 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558469 S 1 1 0 "" KB1 nsv509212 7 76320150 76320150 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623514 S 4 1 0 "" NA18994 nsv508463 7 76324866 76380665 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618815 S 4 0 1 "" NA10860 nsv8165 7 76346697 76353084 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15795,nssv15452 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA07029,NA18537 nsv365983 7 76346890 76352768 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384561 M 24 "" nsv8166 7 76397815 76438368 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18141,nssv19380,nssv15650 M 31 0 3 Samples from several populations that are part of the HapMap project. "" NA18853,NA18860,NA19221 nsv8167 7 76447899 76450692 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15324,nssv18171 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18860,NA18975 nsv366800 7 76651227 76651368 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv385378 M 24 "" nsv516408 7 76752116 76766839 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv668162,nssv682527,nssv668570 M 2026 0 3 "" nsv831039 7 76838579 76996855 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446247 S 95 1 0 "" nsv365896 7 76999399 76999399 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384474 M 24 "" nsv366262 7 77159878 77160586 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384840 M 24 "" nsv365729 7 77221824 77228810 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384307 M 24 "" nsv437550 7 77399848 77401755 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467431 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19211 nsv818524 7 77415172 77419138 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417096 S 112 0 1 "" NA18529 nsv521622 7 77417783 77419138 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698241 S 2026 0 1 "" nsv5802 7 77464950 77498756 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2765 S 9 1 0 "" NA18555 nsv519260 7 77589529 77597874 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696753 S 2026 1 0 "" nsv517924 7 77597874 77598993 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695335 S 2026 0 1 "" nsv507397 7 77671662 77677662 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617739 S 4 1 0 "" CHM esv33014 7 77710997 77711450 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99463 S 51 0 1 "" 22335 nsv522955 7 77737376 77740523 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698624 S 2026 0 1 "" nsv365848 7 78002492 78002831 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384426 M 24 "" nsv527106 7 78086438 78090059 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703486 S 2026 0 1 "" nsv471642 7 78192971 78362256 CNV Loss Sharp et al 2005 15918152 BAC_aCGH,FISH Eichler Segmental Duplication BAC array nssv551116,nssv551118,nssv551119,nssv551117,nssv551115 M 48 0 5 "" JK1061,NA10470,NA10472,NA10494,NA15730 nsv831040 7 78267846 78476649 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446248 S 95 1 0 "" nsv521257 7 78277140 78307076 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697871 S 2026 0 1 "" nsv5803 7 78282763 78314890 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10561 S 9 1 0 "" NA18956 nsv366172 7 78302231 78302292 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384750 M 24 "" nsv5804 7 78317957 78325331 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4997 S 9 1 0 "" NA19129 nsv5805 7 78420997 78451462 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv11149 S 9 1 0 "" NA15510 nsv5806 7 78424807 78500367 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5000 S 9 0 1 "" NA19129 dgv131n17 7 78441561 78501355 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437551,nsv437554,nsv437552 M 60 0 3 "" NA18872,NA19132,NA19173 dgv2110e1 7 78446039 78501658 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv10960,essv8569,essv14927,essv14919,essv11333,essv12138,essv14802,essv13393,essv16390 M 271 0 0 "" NA18870,NA18872,NA19092,NA19128,NA19129,NA19130,NA19132,NA19172,NA19173 dgv2111e1 7 78446039 78532576 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv12936,esv1007 M 271 0 0 "" NA19094 nsv437553 7 78446560 78471787 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467434 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19094 nsv8168 7 78448496 78499165 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16349,nssv18207 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA19132,NA19173 nsv442003 7 78449950 78497344 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv437988 7 78450751 78555625 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv468914,nssv468912,nssv468913,nssv468911,nssv468915 M 269 0 4 Samples from several populations that are part of the HapMap project. "" NA19092,NA19094,NA19130,NA19132 nsv464599 7 78453029 78487940 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540492 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00134 nsv517007 7 78453029 78487940 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv686211,nssv678901,nssv693302,nssv692881,nssv653607,nssv689596,nssv675243,nssv680758,nssv665979,nssv653498,nssv671313,nssv665369,nssv655319,nssv651797,nssv672995 M 2026 0 15 "" nsv818525 7 78453029 78487940 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416558,nssv1418286,nssv1416559,nssv1418287 M 112 0 4 "" NA19092,NA19094,NA19172,NA19173 nsv433238 7 78453029 78495777 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463119 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA19129 nsv831041 7 78464150 78617873 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446249,nssv1446250 M 95 1 1 "" nsv437555 7 78471787 78501355 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467436 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19094 nsv517349 7 78602717 78608424 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv689597,nssv651799,nssv665159,nssv677269 M 2026 0 4 "" nsv464600 7 78626370 78675573 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540493 S 1557 0 1 "" 1782681316_A nsv5807 7 78683861 78713496 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5001 S 9 1 0 "" NA19129 nsv464601 7 78818836 78892771 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540494 S 1557 0 1 "" 1780854341_A nsv818526 7 78825022 78846420 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417837 S 112 0 1 "" NA06985 dgv2112e1 7 78906115 79072297 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1340,esv204 M 271 0 0 "" NA19007 nsv464602 7 78960412 79047202 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540495 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00796 nsv8170 7 78974722 78979742 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15557 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18563 nsv5808 7 79098283 79147106 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9718,nssv650 M 9 0 2 "" NA18507,NA19240 nsv818527 7 79281333 79332495 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415847 S 112 0 1 "" NA11992 nsv5810 7 79372936 79405348 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2668 S 9 1 0 "" NA18555 nsv507398 7 79474358 79480358 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617740 S 4 1 0 "" CHM nsv526091 7 79498098 79499402 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702337 S 2026 0 1 "" nsv517963 7 79519118 79531922 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694186 S 2026 0 1 "" nsv528393 7 79609613 79613709 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704983 S 2026 0 1 "" nsv831042 7 79628730 79766963 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446252 S 95 1 0 "" nsv525104 7 79635680 79646874 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701163 S 2026 0 1 "" nsv464603 7 79675252 79709378 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540496 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00634 nsv831043 7 79764065 79966743 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446253 S 95 0 1 "" nsv464604 7 79765998 79786868 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540497 S 1557 0 1 "" NINDS_125 nsv365325 7 79771572 79771641 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv383903 M 24 "" nsv464606 7 79821735 79956445 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540499 S 1557 1 0 "" 1780862075_A nsv525704 7 79848369 79880665 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701864 S 2026 0 1 "" nsv5811 7 79854022 79857526 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3549 S 9 1 0 "" NA12878 nsv464607 7 79907481 79933505 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540500 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00632 nsv5812 7 80245929 80290578 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8389 S 9 0 1 "" NA12156 nsv521001 7 80262689 80289312 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697730 S 2026 0 1 "" nsv366709 7 80277357 80277357 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv385287 M 24 "" nsv831044 7 80366424 80563242 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446254 S 95 1 0 "" nsv831045 7 80486344 80657055 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446255 S 95 0 1 "" nsv464608 7 80510804 80582696 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540501 S 1557 0 1 "" 1780854261_A nsv526500 7 80515030 80525333 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702809 S 2026 1 0 "" nsv5813 7 80911660 80956283 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8390 S 9 0 1 "" NA12156 nsv366332 7 81002989 81003262 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384910 M 24 "" nsv464609 7 81022567 81055567 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540502 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00952 nsv5814 7 81053079 81083007 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv11150 S 9 1 0 "" NA15510 nsv366187 7 81086339 81087248 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384765 M 24 "" nsv528550 7 81205755 81205908 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705163 S 2026 0 1 "" nsv510093 7 81214111 81220111 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624038 S 4 0 1 "" NA18994 nsv510094 7 81241845 81247845 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624039,nssv621315,nssv622139 M 4 0 3 "" NA10860,NA15510,NA18994 nsv818528 7 81406827 81430694 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418471 S 112 0 1 "" NA19193 nsv5815 7 81421372 81453930 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2669 S 9 1 0 "" NA18555 nsv464610 7 81450308 81475114 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540503 S 1557 0 1 "" 1782681216_A nsv518794 7 81525347 81537613 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696249 S 2026 1 0 "" nsv522458 7 81527560 81542254 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705821 S 2026 1 0 "" nsv523665 7 81562722 81568092 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699466 S 2026 0 1 "" nsv5816 7 81563704 81609096 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6148 S 9 0 1 "" NA12156 nsv818529 7 81567764 81571459 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417097,nssv1417424 M 112 0 2 "" NA18529,NA18952 nsv464611 7 81568092 81571459 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540504 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00759 nsv464612 7 81602196 81637911 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540505 S 1557 0 1 "" NINDS_94 esv2752186 7 81602288 82105600 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6988697,essv6983665,essv6983664,essv6986489,essv6986488 M 771 1 0 "" BEC_678 nsv524315 7 81679672 82083385 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700217 S 2026 1 0 "" nsv831046 7 81940351 82140185 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446257,nssv1446256 M 95 2 0 "" nsv5817 7 82064337 82109072 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8391 S 9 0 1 "" NA12156 nsv818530 7 82145941 82169314 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416358 S 112 0 1 "" NA18855 nsv519920 7 82297671 82310481 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697126 S 2026 0 1 "" nsv442054 7 82360611 82362615 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv464614 7 82416046 82476709 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540506 S 1557 0 1 "" NINDS_127 nsv528771 7 82434573 82434893 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705435 S 2026 0 1 "" nsv527081 7 82441451 82476709 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703460 S 2026 1 0 "" nsv464615 7 82462035 82487068 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540507 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00909 nsv464618 7 82462035 82502622 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540509 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00933 nsv464619 7 82514773 82553528 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540510 S 1557 0 1 "" 1780862088_A nsv527261 7 82523706 82525619 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703667 S 2026 0 1 "" nsv365858 7 82555548 82555610 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384436 M 24 "" esv33579 7 82695362 82695666 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99943 S 51 0 1 "" 22086 nsv526178 7 82801858 82802418 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702439 S 2026 0 1 "" nsv818531 7 82838020 82853353 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417884 S 112 1 0 "" NA18852 dgv2113e1 7 82945157 83104763 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv18439,esv12 M 271 0 0 "" NA11831 nsv518106 7 83013885 83025683 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695519 S 2026 0 1 "" nsv818532 7 83163711 83171394 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418472 S 112 0 1 "" NA19193 nsv523680 7 83342828 83344384 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699484 S 2026 1 0 "" nsv527413 7 83342828 83344384 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703851 S 2026 0 1 "" nsv508464 7 83343590 83358801 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618816 S 4 0 1 "" NA10860 nsv442055 7 83427084 83431339 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv519788 7 83427086 83431111 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv658631,nssv680637,nssv662223 M 2026 0 3 "" nsv517852 7 83427086 83439407 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694172 S 2026 0 1 "" nsv5818 7 83519619 83564455 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8392 S 9 0 1 "" NA12156 nsv524905 7 83555922 83589157 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700916 S 2026 0 1 "" nsv519466 7 83654656 83655611 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696868 S 2026 0 1 "" nsv5819 7 83763638 83797047 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8393 S 9 1 0 "" NA12156 nsv5821 7 83804364 83849119 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8394 S 9 0 1 "" NA12156 dgv422n21 7 83830810 83990677 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv521668,nsv525826 M 2026 0 2 "" nsv831047 7 83876589 84052732 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446258 S 95 1 0 "" nsv831049 7 83922250 84120361 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446259 S 95 1 0 "" esv34238 7 83923674 84236617 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6980397,essv6980398,essv6987784,essv6989173 M 771 0 1 "" NA10831 nsv523844 7 83972728 83979149 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699677 S 2026 0 1 "" nsv831050 7 84000647 84171912 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446260 S 95 1 0 "" nsv507399 7 84053114 84059114 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623012,nssv620384 M 4 2 0 "" NA15510,NA18994 esv2422324 7 84174941 84589564 CNV Deletion Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161516 S 181 0 1 "" ND02760 nsv366190 7 84235075 84235075 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384768 M 24 "" nsv519125 7 84349098 84440361 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696602 S 2026 0 1 "" nsv521507 7 84382334 84383146 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698124 S 2026 0 1 "" nsv464621 7 84414304 84440361 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540511 S 1557 0 1 "" 1780854293_A nsv5822 7 84475104 84485492 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10563 S 9 1 0 "" NA18956 nsv518221 7 84550506 84556452 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695645 S 2026 0 1 "" nsv5823 7 84594509 84629015 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2766 S 9 1 0 "" NA18555 nsv520264 7 84649910 84700317 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697314 S 2026 0 1 "" nsv510965 7 84686339 84700088 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624318 S 4 0 0 "" NA18994 nsv526391 7 84692509 84700317 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702690 S 2026 0 1 "" nsv521824 7 84735654 84744549 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694596 S 2026 0 1 "" nsv518864 7 84792411 84793614 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696320 S 2026 0 1 "" dgv2114e1 7 84797973 84962693 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv4502,esv167 M 271 0 0 "" NA18552 nsv831051 7 84799599 84966567 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446261 S 95 0 1 "" nsv507400 7 84959556 84965556 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617741,nssv621879 M 4 2 0 "" CHM,NA10860 nsv831052 7 85011183 85151554 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446263 S 95 0 1 "" nsv507401 7 85012855 85018855 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617742 S 4 1 0 "" CHM nsv5824 7 85020050 85053513 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2767 S 9 1 0 "" NA18555 nsv518741 7 85026265 85215170 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696191 S 2026 0 1 "" nsv525846 7 85063662 85134344 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702039 S 2026 1 0 "" nsv510095 7 85251633 85257633 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622140 S 4 0 1 "" NA10860 nsv520114 7 85285063 85299182 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697230 S 2026 0 1 "" nsv524054 7 85446881 85486344 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699920 S 2026 0 1 "" nsv526622 7 85866910 85905467 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702942 S 2026 0 1 "" nsv442014 7 85879536 85889056 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv831053 7 85912822 86085650 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446264 S 95 1 0 "" nsv527889 7 86140693 86477254 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704392 S 2026 1 0 "" nsv5825 7 86233550 86267371 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8395 S 9 1 0 "" NA12156 nsv525634 7 86235004 86253437 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701788 S 2026 1 0 "" nsv8171 7 86308663 86327099 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15963,nssv16379 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA07048,NA19173 nsv5826 7 86385153 86419382 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8396 S 9 1 0 "" NA12156 nsv8172 7 86392392 86394585 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18413,nssv15354,nssv16981 M 31 3 0 Samples from several populations that are part of the HapMap project. "" NA18972,NA18975,NA19240 nsv464622 7 86477254 87185899 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540512 S 1557 1 0 "" 1780854357_A dgv234n6 7 86481266 86481589 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv365994,nsv366774 M 24 "" nsv366901 7 86654213 86654213 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv385479 M 24 "" nsv464623 7 86685280 86783967 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540513 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00807 nsv523246 7 86721238 86722647 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698975 S 2026 0 1 "" nsv528078 7 87041996 87063512 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704614 S 2026 0 1 "" nsv525073 7 87179747 87457619 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701127 S 2026 1 0 "" nsv529001 7 87185899 87208928 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705707 S 2026 0 1 "" nsv517676 7 87248394 87250897 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv670129,nssv662368,nssv675994,nssv683500,nssv680205,nssv663311,nssv675683,nssv663820,nssv683153,nssv652791 M 2026 0 10 "" nsv437021 7 87311317 87319322 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv466902 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA10835 nsv442056 7 87315390 87317043 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv5827 7 87585124 87622859 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8397 S 9 0 1 "" NA12156 dgv2115e1 7 87731680 87974020 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv688,essv15596 M 271 0 0 "" NA19137 nsv366501 7 87735951 87736400 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv385079 M 24 "" nsv5828 7 87740869 87774609 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8398 S 9 1 0 "" NA12156 nsv522235 7 87747396 87793116 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695013 S 2026 0 1 "" nsv818534 7 87781235 87898914 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416945 S 112 0 1 "" NA19137 esv34595 7 87781582 87898914 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6980855,essv6987864,essv6980854 M 771 0 1 "" NA19137 essv9270 7 87781582 87907853 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19137 nsv464625 7 87786626 87898914 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540514 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00918 nsv515995 7 87793116 89154587 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv656682,nssv695014,nssv678833,nssv699983,nssv705622,nssv701076,nssv657359,nssv665637,nssv699963,nssv705765,nssv697246,nssv699413,nssv693176,nssv706123,nssv677430,nssv682035,nssv695317,nssv700639 M 2026 5 13 "" esv2752187 7 87820176 88292637 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6988887,essv6987145,essv6985066,essv6985067,essv6987146 M 771 1 0 "" BEC_9 esv2752188 7 87820176 89529400 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6985286,essv6987203,essv6987202,essv6987201,essv6988914,essv6985282,essv6985283,essv6985284,essv6985285 M 771 1 0 "" SPC_136 nsv831054 7 87866824 88062333 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446265 S 95 1 0 "" nsv464626 7 87969071 89527780 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540515 S 1557 1 0 "" 1780854574_A nsv831055 7 88127207 88305425 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446267,nssv1446266 M 95 0 2 "" dgv2116e1 7 88201486 88268110 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv22794,esv1420 M 271 0 0 "" NA12753 esv33064 7 88231263 88235891 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99707 S 51 0 1 "" 22217 nsv464627 7 88249302 88298536 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540516 S 1557 0 1 "" 1788485381_A nsv5829 7 88364758 88397681 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv651 S 9 1 0 "" NA19240 nsv365593 7 88430034 88430090 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384171 M 24 "" nsv366862 7 88435510 88435510 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv385440 M 24 "" nsv831056 7 88444568 88547502 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446268 S 95 0 1 "" nsv464629 7 88492695 88535842 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540518 S 1557 0 1 "" NINDS_2 nsv818535 7 88509083 88515752 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418289,nssv1418288 M 112 0 2 "" NA19093,NA19094 nsv507402 7 88663118 88669118 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621880,nssv617743 M 4 2 0 "" CHM,NA10860 nsv5830 7 88713705 88747336 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2768 S 9 1 0 "" NA18555 nsv509214 7 88784040 88784040 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619493 S 4 1 0 "" NA10860 nsv831057 7 88797827 88974504 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446269 S 95 1 0 "" nsv366505 7 88825761 88825761 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv385083 M 24 "" esv2422434 7 89044603 89328840 CNV Deletion Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161465 S 181 0 1 "" ND03792 esv2422216 7 89045119 89363140 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161540 S 181 1 0 "" ND04045 nsv831058 7 89068064 89257523 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446272,nssv1446271,nssv1446270 M 95 3 0 "" nsv525531 7 89134267 89189742 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701666 S 2026 0 1 "" nsv520652 7 89154587 89169524 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697538 S 2026 0 1 "" nsv510096 7 89160598 89166598 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622141,nssv618266 M 4 0 2 "" CHM,NA10860 nsv517113 7 89165554 89169524 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv662260,nssv673520,nssv687463,nssv674209,nssv668498,nssv685569,nssv679570,nssv680661,nssv672541,nssv666383,nssv683604,nssv693177,nssv675823,nssv677859,nssv672720,nssv661786,nssv688014,nssv653804,nssv665086,nssv677499,nssv677431,nssv673424,nssv679512,nssv691174,nssv671182,nssv657360,nssv677992,nssv665638,nssv663840,nssv671796,nssv673101,nssv687552,nssv690987,nssv672432,nssv687831,nssv653147,nssv675778,nssv661728,nssv678410,nssv652089,nssv684188,nssv692659,nssv668116,nssv665301,nssv678521,nssv674708,nssv664539,nssv690009,nssv664586 M 2026 0 49 "" dgv423n21 7 89165554 89183274 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv527991,nsv527659 M 2026 0 2 "" nsv522933 7 89165554 89251009 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698596 S 2026 1 0 "" nsv515997 7 89179257 89527780 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695806,nssv677432,nssv702277,nssv697020,nssv665639,nssv700692,nssv657361 M 2026 4 3 "" dgv825n27 7 89188964 89354432 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv464631,nsv464632,nsv464630 M 1557 0 3 "" 1780854206_A,NINDS_149,NINDS_193 nsv366573 7 89243524 89243839 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv385151 M 24 "" esv2752191 7 89295509 89378755 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6989286,essv6989578,essv6982125 M 771 0 1 "" BEC_521 dgv2117e1 7 89331811 89501295 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv19845,esv909 M 271 0 0 "" NA12234 nsv818536 7 89354432 89380150 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417649 S 112 1 0 "" NA12234 nsv510097 7 89418995 89424995 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618267 S 4 0 1 "" CHM nsv508465 7 89421995 89503025 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619992 S 4 0 1 "" NA15510 nsv8173 7 89454839 89457039 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18473,nssv14860,nssv15874,nssv18201,nssv15596,nssv15865,nssv14569,nssv15245,nssv16348,nssv15825,nssv14381,nssv15993,nssv15482,nssv15680,nssv16838,nssv17862,nssv15587,nssv16248,nssv18704,nssv16409,nssv17011,nssv18237,nssv19410,nssv16206 M 31 24 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10847,NA10863,NA12155,NA12802,NA12872,NA18502,NA18517,NA18537,NA18563,NA18564,NA18572,NA18853,NA18860,NA18972,NA18980,NA19007,NA19132,NA19144,NA19173,NA19221,NA19240 nsv437989 7 89455178 89456949 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv468954,nssv468916,nssv468950,nssv468926,nssv468949,nssv468928,nssv468953,nssv468933,nssv468938,nssv468939,nssv468943,nssv468942,nssv468934,nssv468925,nssv468945,nssv468917,nssv468922,nssv468924,nssv468921,nssv468927,nssv468935,nssv468929,nssv468920,nssv468931,nssv468951,nssv468955,nssv468918,nssv468923,nssv468932,nssv468940,nssv468937,nssv468936,nssv468948,nssv468946,nssv468944,nssv468947 M 269 0 36 Samples from several populations that are part of the HapMap project. "" NA06985,NA07000,NA07345,NA07348,NA10851,NA10856,NA10857,NA10861,NA11830,NA12043,NA12044,NA12056,NA12057,NA12145,NA12707,NA12716,NA12717,NA12740,NA12753,NA12760,NA12801,NA12812,NA12813,NA12815,NA12864,NA12865,NA12874,NA18503,NA18523,NA18914,NA19116,NA19128,NA19129,NA19131,NA19139,NA19207 nsv8174 7 89481019 89483949 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18503 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18972 esv32582 7 89516716 89519882 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93258 S 51 1 0 "" 22170 nsv507403 7 89551016 89557016 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621881,nssv620385 M 4 2 0 "" NA10860,NA15510 nsv515998 7 89745257 89872461 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv665640,nssv674797,nssv657362,nssv681563,nssv677433 M 2026 5 0 "" nsv464634 7 89778578 89862997 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540522 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00956 dgv826n27 7 89811556 89865999 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv464636,nsv464635 M 1557 2 0 "" HGDP00776,HGDP01198 dgv827n27 7 89830402 89873689 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv464638,nsv464637 M 1557 2 0 "" HGDP00711,HGDP00715 nsv442057 7 89830717 89865482 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" esv32570 7 89865565 89867207 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98917 S 51 0 1 "" 21606 nsv464640 7 89906025 89955188 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540528 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00090 nsv527216 7 89948436 89973680 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703616 S 2026 1 0 "" nsv5832 7 90227282 90262332 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv652 S 9 1 0 "" NA19240 nsv5833 7 90281001 90314464 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3550 S 9 1 0 "" NA12878 nsv510098 7 90303924 90309924 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618268 S 4 0 1 "" CHM esv32913 7 90352635 90353229 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97568 S 51 0 1 "" 21616 esv33717 7 90358253 90358592 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv95725 S 51 1 0 "" 21841 nsv528932 7 90370966 90402887 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705623 S 2026 0 1 "" nsv510099 7 90431815 90437815 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622142,nssv621316,nssv624040 M 4 0 3 "" NA10860,NA15510,NA18994 nsv517959 7 90437059 90465612 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695372 S 2026 0 1 "" nsv524316 7 90439446 90445438 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700218 S 2026 0 1 "" nsv524783 7 90594384 90594874 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700774 S 2026 0 1 "" nsv508466 7 90649706 90704513 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619993 S 4 0 1 "" NA15510 nsv5834 7 90654169 90697474 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv11151,nssv2670 M 9 0 2 "" NA15510,NA18555 nsv3 7 90662357 90690385 CNV Loss Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv3 S 1 0 1 "" NA15510 nsv8175 7 90674727 90687798 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15617,nssv16278,nssv15895,nssv14599 M 31 0 4 Samples from several populations that are part of the HapMap project. "" NA18563,NA18564,NA18572,NA18980 nsv442030 7 90676386 90685378 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv508467 7 90712727 90772238 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618817 S 4 0 1 "" NA10860 nsv522893 7 90768073 90855324 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698551 S 2026 1 0 "" nsv831060 7 90772084 90975471 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446274 S 95 1 0 "" nsv818537 7 90812048 90818914 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417885 S 112 1 0 "" NA18852 nsv508468 7 90827178 90890860 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617349,nssv619994 M 4 0 2 "" CHM,NA15510 nsv5835 7 90838361 90896077 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv653,nssv5002,nssv3552,nssv2671,nssv6149,nssv9908 M 9 0 6 "" NA12156,NA12878,NA18507,NA18555,NA19129,NA19240 nsv4 7 90839827 90880656 CNV Loss Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv4 S 1 0 1 "" NA15510 nsv8176 7 90853717 90863373 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18533 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18972 nsv831061 7 90913043 91109788 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446275 S 95 1 0 "" nsv5836 7 90918448 90925614 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8399 S 9 0 1 "" NA12156 nsv437556 7 90998982 91006363 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467437 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18500 nsv515779 7 91003282 91003513 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv689190,nssv661551,nssv678742,nssv681094,nssv668889,nssv668520,nssv671408,nssv688164,nssv667586,nssv692227,nssv691575,nssv688943,nssv685500,nssv693142,nssv658518,nssv676187,nssv664748,nssv679287,nssv675322,nssv684772,nssv660807,nssv666909 M 2026 0 22 "" nsv437990 7 91020289 91033487 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv468957,nssv468956 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA18964,NA18994 nsv5837 7 91043518 91046197 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2769 S 9 1 0 "" NA18555 nsv5838 7 91216179 91261187 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8400 S 9 0 1 "" NA12156 nsv5839 7 91397761 91424705 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10564 S 9 1 0 "" NA18956 nsv5840 7 91728388 91760958 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10565 S 9 1 0 "" NA18956 nsv5841 7 91796309 91829640 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8401 S 9 1 0 "" NA12156 nsv831062 7 91885885 92105262 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446276 S 95 1 0 "" nsv516592 7 91909644 91924014 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv669443,nssv705410,nssv662501 M 2026 2 1 "" nsv365451 7 92120478 92122697 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384029 M 24 "" nsv437022 7 92124423 92163275 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv466903 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA10854 nsv437991 7 92125488 92142078 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv468958,nssv468960,nssv468959,nssv468961 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA10854,NA11840 nsv5843 7 92171193 92216176 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8402 S 9 0 1 "" NA12156 esv2752192 7 92177806 92275105 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6983182,essv6983181 M 771 1 0 "" BEC_550 nsv510100 7 92254414 92260414 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618269 S 4 0 1 "" CHM nsv5844 7 92278072 92311100 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2672 S 9 1 0 "" NA18555 nsv525606 7 92292991 92299490 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701751 S 2026 0 1 "" nsv366418 7 92328830 92332954 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384996 M 24 "" nsv5845 7 92341355 92385921 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4609 S 9 0 1 "" NA19129 nsv528267 7 92492082 92560016 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704835 S 2026 0 1 "" nsv442058 7 92638591 92642304 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv517660 7 92639761 92640403 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv669858,nssv683034,nssv652734,nssv679531 M 2026 0 4 "" nsv464641 7 92808370 92867456 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540529 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00056 nsv5846 7 92810393 92844184 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3553 S 9 1 0 "" NA12878 nsv5847 7 92964736 93000893 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5003,nssv654 M 9 0 2 "" NA19129,NA19240 dgv65n64 7 92970711 92975208 CNV Loss Wang_et_al_2007 17921354 SNP_array nsv818538,nsv818539 M 112 0 4 "" NA10851,NA12056,NA18576,NA18999 dgv132n17 7 92970711 92979097 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437023,nsv437558,nsv437025 M 60 0 3 "" NA10847,NA12707,NA19173 nsv8177 7 92971060 92979155 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16308,nssv18163,nssv18563,nssv16378,nssv15710,nssv17892,nssv16569,nssv16236,nssv15384,nssv18231,nssv15647,nssv15925,nssv14629,nssv15937,nssv15172,nssv18734,nssv15916,nssv15855,nssv15512,nssv16868,nssv18267,nssv15626 M 31 21 1 Samples from several populations that are part of the HapMap project. "" NA07029,NA10863,NA11830,NA12155,NA12740,NA18502,NA18504,NA18517,NA18537,NA18552,NA18563,NA18564,NA18572,NA18853,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19144 esv33560 7 92971833 92975985 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98749,essv97455,essv94709,essv94793,essv94434,essv95388,essv101778,essv98997,essv92925,essv92709,essv96616,essv98565,essv96021,essv96061,essv93517,essv92610,essv98122,essv97700,essv99416 M 51 0 17 "" 21606,21616,21791,21808,21872,21909,21938,21939,21944,22011,22085,22127,22128,22233,22259,22278,22335 nsv517075 7 92972045 92975208 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv675154,nssv673149,nssv690905,nssv663268,nssv691240,nssv653737,nssv689439,nssv661729,nssv693557,nssv691954,nssv683999,nssv693820,nssv661797,nssv676674,nssv668602,nssv656599,nssv663507,nssv668259,nssv668146,nssv664440,nssv675033,nssv657223,nssv665885,nssv672514,nssv670667,nssv663994,nssv674620,nssv675134,nssv681677,nssv687645,nssv669001,nssv675300,nssv691508,nssv688851,nssv688377,nssv656451,nssv665829,nssv663714,nssv659443,nssv666662,nssv664268,nssv654432,nssv685655,nssv665252,nssv658810,nssv662752,nssv669078,nssv678383,nssv668913,nssv664795,nssv690227,nssv672433,nssv659162,nssv688115,nssv661664,nssv658606,nssv670830,nssv680526,nssv669721,nssv653148,nssv663688,nssv687832,nssv673074,nssv685319,nssv679453,nssv658446,nssv664460,nssv693236,nssv673012,nssv652185,nssv654680,nssv658395,nssv680495,nssv654835,nssv654144,nssv694026,nssv664051,nssv655344,nssv660639,nssv671336,nssv659004,nssv682971,nssv679745,nssv660968,nssv663162,nssv657644,nssv665754,nssv671501,nssv693524,nssv654112,nssv691706,nssv690171,nssv663868 M 2026 4 89 "" nsv526493 7 92972045 92979097 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702802 S 2026 1 0 "" nsv437992 7 92972130 92975208 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv468962,nssv468969,nssv468967,nssv468966,nssv468970,nssv468971,nssv468965,nssv468968 M 269 0 8 Samples from several populations that are part of the HapMap project. "" NA10847,NA10854,NA12056,NA12239,NA12707,NA12717,NA12814,NA12864 nsv526004 7 92994502 92995091 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702232 S 2026 0 1 "" nsv5848 7 93035839 93091354 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9909,nssv655,nssv10566,nssv5004,nssv3554,nssv2673,nssv6150 M 9 0 7 "" NA12156,NA12878,NA18507,NA18555,NA18956,NA19129,NA19240 nsv508469 7 93060855 93070409 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622580 S 4 0 1 "" NA18994 nsv366571 7 93061593 93067656 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv385149 M 24 "" esv2422226 7 93293909 93600240 CNV Deletion Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161363 S 181 0 1 "" ND01670 nsv5849 7 93304495 93338222 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5005 S 9 1 0 "" NA19129 nsv464642 7 93528250 93725832 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540530 S 1557 0 1 "" NINDS_71 nsv365980 7 93537234 93537431 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384558 M 24 "" nsv5850 7 93705514 93737976 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv656 S 9 1 0 "" NA19240 esv2422248 7 93817796 94229281 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161318 S 181 1 0 "" ND01705 nsv527530 7 93977043 94025160 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703988 S 2026 1 0 "" nsv464643 7 93983514 94215983 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540531 S 1557 1 0 "" NINDS_91 nsv831063 7 94016109 94188079 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446277 S 95 1 0 "" nsv523751 7 94025160 94051076 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699568 S 2026 0 1 "" nsv528449 7 94279048 94287766 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705048 S 2026 0 1 "" nsv524733 7 94431317 94458039 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700724 S 2026 0 1 "" nsv518209 7 94431317 94475694 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694212 S 2026 0 1 "" nsv5851 7 94582409 94613817 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8403 S 9 0 1 "" NA12156 nsv528555 7 94585238 94603279 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705169 S 2026 0 1 "" nsv527502 7 94622288 94622404 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703952 S 2026 0 1 "" nsv521512 7 94722826 94722947 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694455 S 2026 0 1 "" nsv818540 7 94992598 95008512 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417326 S 112 1 0 "" NA18608 nsv365457 7 95030905 95031235 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384035 M 24 "" nsv5852 7 95227886 95255786 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv11152 S 9 1 0 "" NA15510 nsv527504 7 95235878 95247496 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703956 S 2026 1 0 "" nsv5856 7 95286482 95321693 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv659 S 9 1 0 "" NA19240 nsv510101 7 95540315 95546315 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624041 S 4 0 1 "" NA18994 nsv510102 7 95643860 95649860 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622143,nssv618270,nssv621317,nssv624042 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv507404 7 95683308 95689308 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621882 S 4 1 0 "" NA10860 nsv831064 7 95752181 95933693 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446278 S 95 1 0 "" nsv831065 7 95920483 96080682 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446279 S 95 1 0 "" nsv5857 7 96084815 96138761 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10567,nssv9719,nssv3555,nssv11153,nssv660,nssv5006,nssv6151,nssv2674 M 9 0 8 "" NA12156,NA12878,NA15510,NA18507,NA18555,NA18956,NA19129,NA19240 nsv5 7 96096003 96138761 CNV Loss Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv5 S 1 0 1 "" NA15510 nsv508472 7 96119347 96136218 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619995,nssv618818,nssv617350,nssv622581 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv366719 7 96167408 96167735 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv385297 M 24 "" nsv522786 7 96354802 96361515 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698430 S 2026 0 1 "" nsv442059 7 96896889 96902820 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv437559 7 97006435 97027971 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467440 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18515 nsv508473 7 97030019 97051815 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619997 S 4 0 1 "" NA15510 nsv5858 7 97030224 97067949 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv11154,nssv3556 M 9 0 2 "" NA12878,NA15510 nsv6 7 97030224 97067949 CNV Loss Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv6 S 1 0 1 "" NA15510 nsv8178 7 97031625 97047716 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14441,nssv16338,nssv15946,nssv14890,nssv16266,nssv18193,nssv16898,nssv17922 M 31 0 8 Samples from several populations that are part of the HapMap project. "" NA10863,NA12155,NA12802,NA12872,NA18502,NA18504,NA18552,NA18564 nsv525400 7 97032921 97045550 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701523 S 2026 0 1 "" nsv516307 7 97033681 97067577 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv690746,nssv675135,nssv689440,nssv674621,nssv673694,nssv653331,nssv666505,nssv663055,nssv689958,nssv652544,nssv698074,nssv675979,nssv652090,nssv678652,nssv691544,nssv678954,nssv667644,nssv655293,nssv682716,nssv671032,nssv679513,nssv693884,nssv672092,nssv664599,nssv680565,nssv692196,nssv686434,nssv671337,nssv667809,nssv669819,nssv689819,nssv666384,nssv676789,nssv686374,nssv668338,nssv689739,nssv652411,nssv664999,nssv670682,nssv689559,nssv675779,nssv690467,nssv656766,nssv689777,nssv652741,nssv672721,nssv684945,nssv672819,nssv661162 M 2026 0 49 "" nsv437994 7 97041360 97045649 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv468982,nssv468974,nssv468987,nssv468976,nssv468972,nssv468973,nssv468985,nssv468981,nssv468984,nssv468980,nssv468977,nssv468978,nssv468979,nssv468983 M 269 0 14 Samples from several populations that are part of the HapMap project. "" NA10830,NA10831,NA10854,NA10857,NA10860,NA11840,NA11993,NA12003,NA12043,NA12154,NA12155,NA12802,NA12864,NA12872 nsv433482 7 97041518 97045550 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463363 S 9 0 1 "" NA15510 nsv818541 7 97044275 97049031 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415581,nssv1415580 M 112 0 2 "" NA10830,NA12154 dgv2118e1 7 97120935 97292680 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv475,essv19571 M 271 0 0 "" NA12864 nsv8179 7 97198242 97206060 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18593,nssv15976,nssv17952,nssv16928,nssv18261 M 31 3 2 Samples from several populations that are part of the HapMap project. "" NA12155,NA18502,NA18552,NA18860,NA18972 esv32764 7 97245709 97283644 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99481 S 51 0 1 "" 22335 nsv8181 7 97297568 97302586 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16006 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18552 nsv831066 7 97371530 97535201 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446280 S 95 0 1 "" nsv5859 7 97457666 97466617 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv661 S 9 1 0 "" NA19240 nsv525934 7 97497835 97510942 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702140 S 2026 0 1 "" nsv831067 7 97504820 97710179 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446281 S 95 0 1 "" nsv5860 7 97640590 97672751 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8404 S 9 0 1 "" NA12156 nsv365794 7 97727491 97727815 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384372 M 24 "" nsv5861 7 97814383 97823349 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8405 S 9 1 0 "" NA12156 nsv509215 7 97987680 98074504 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623515,nssv620885,nssv619494 M 4 3 0 "" NA10860,NA15510,NA18994 nsv5862 7 98027266 98037442 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv662,nssv2675,nssv3557 M 9 3 0 "" NA12878,NA18555,NA19240 nsv366204 7 98305490 98305564 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384782 M 24 "" dgv828n27 7 98399923 98433240 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv464646,nsv464645 M 1557 0 2 "" HGDP01412,HGDP01418 nsv528070 7 98403768 98411581 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704606 S 2026 0 1 "" nsv509216 7 98406074 98473918 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620886,nssv619495,nssv623516 M 4 3 0 "" NA10860,NA15510,NA18994 nsv831068 7 98464223 98651132 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446286,nssv1446287,nssv1446285,nssv1446283,nssv1446282 M 95 0 5 "" nsv5863 7 98591779 98615461 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10568 S 9 1 0 "" NA18956 nsv831069 7 98592779 98772235 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446288,nssv1446289,nssv1446291,nssv1446290 M 95 0 4 "" nsv5864 7 98653954 98685847 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6152 S 9 1 0 "" NA12156 nsv5865 7 98899072 98932384 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2676 S 9 1 0 "" NA18555 nsv522107 7 98945409 98959637 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694132 S 2026 0 1 "" nsv482109 7 98999255 99026459 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558470 S 1 1 0 "" KB1 nsv433391 7 99208612 99263257 CNV Gain Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463272 S 9 1 0 "" NA15510 esv32694 7 99210259 99274570 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101467,essv98767,essv97531,essv101143,essv93903,essv96755,essv100975,essv95210,essv98166,essv94764,essv93981,essv101351,essv94428,essv96990,essv95642,essv95524,essv93115,essv95324,essv101687,essv95779,essv94586,essv99120,essv92998,essv92739,essv93633,essv96659,essv98643,essv100098,essv95995,essv93583,essv93229,essv99603,essv92660,essv98038,essv99278,essv97628,essv100168,essv100421,essv98504,essv96270,essv94144 M 51 0 41 "" 21603,21606,21616,21618,21634,21659,21693,21721,21772,21791,21802,21805,21808,21817,21841,21847,21863,21872,21909,21911,21932,21938,21939,21944,21972,22011,22085,22086,22127,22128,22170,22217,22233,22259,22275,22278,22286,22300,22352,22371,22394 nsv469687 7 99217194 99399792 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649618 M 265 0 4 Samples from several populations that are part of the HapMap project. "" nsv510966 7 99219671 99342474 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621600 S 4 0 0 "" NA15510 nsv507405 7 99290716 99296716 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617744 S 4 1 0 "" CHM nsv5867 7 99411425 99444406 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6153 S 9 0 1 "" NA12156 nsv8182 7 99444467 99524432 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18794,nssv16023,nssv18223,nssv16368,nssv15542,nssv19470,nssv15885,nssv15656,nssv16599 M 31 9 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA12740,NA18504,NA18517,NA18537,NA18564,NA19007,NA19221 nsv8183 7 99541225 99581292 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18291,nssv15572,nssv15967,nssv18623 M 31 2 2 Samples from several populations that are part of the HapMap project. "" NA07029,NA11830,NA18860,NA18972 nsv831071 7 99562676 99758064 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446298,nssv1446292,nssv1446293,nssv1446297,nssv1446294 M 95 0 5 "" nsv527107 7 99659362 99709370 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703487 S 2026 0 1 "" nsv518432 7 99700817 99709370 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695866 S 2026 0 1 "" nsv527050 7 99700817 99770626 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703426 S 2026 0 1 "" nsv518760 7 99754975 99764294 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696210 S 2026 0 1 "" nsv522427 7 99754975 99764294 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705780 S 2026 1 0 "" nsv831072 7 99807154 100007486 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446305,nssv1446301,nssv1446304,nssv1446309,nssv1446308,nssv1446306,nssv1446299,nssv1446302,nssv1446303,nssv1446300,nssv1446310 M 95 0 11 "" nsv5868 7 99814649 99859297 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8406 S 9 0 1 "" NA12156 nsv8184 7 99885388 99990596 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15997,nssv15904 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA10839,NA11830 nsv365346 7 99920574 99920671 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv383924 M 24 "" esv33610 7 99969525 99981735 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101547,essv98816,essv101272,essv95134,essv98212,essv94814,essv94400,essv97068,essv95629,essv95506,essv93110,essv95309,essv101679,essv95906,essv93001,essv93673,essv96635,essv96037,essv93521,essv93250,essv99711,essv92551,essv97989,essv97690,essv100157,essv100432,essv98502,essv96286,essv94146 M 51 25 4 "" 21603,21606,21618,21721,21772,21791,21808,21817,21841,21847,21863,21872,21909,21911,21939,21972,22011,22127,22128,22170,22217,22233,22259,22278,22286,22300,22352,22371,22394 nsv5869 7 99970376 99991991 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6155,nssv663 M 9 0 2 "" NA12156,NA19240 nsv442074 7 99973895 99977493 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" esv33833 7 99986329 99987843 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101458,essv95713,essv95415,essv92848 M 51 0 4 "" 21603,21841,21847,21939 dgv2119e1 7 100000141 100342681 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv326,essv1920 M 271 0 0 "" NA18959 nsv831073 7 100070310 100189539 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446311 S 95 0 1 "" nsv5870 7 100087980 100117418 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8407 S 9 1 0 "" NA12156 nsv482110 7 100132267 100138192 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558471 S 1 1 0 "" KB1 nsv8185 7 100177385 100183618 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15602,nssv15934 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA07029,NA10839 nsv437026 7 100178473 100204207 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv466907 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA12802 dgv2120e1 7 100199479 100342681 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv3952,essv5058,essv7752,essv1509,essv3000,essv7075,essv35,essv3896,essv10774,essv23498,essv12372,essv5560,essv6121,essv19764,essv15222,essv576,essv7620,essv24065,essv7223,essv264,essv13675,essv24751,essv9224,essv1273,essv10982,essv21687,essv6779,essv385,essv20417,essv16976,essv8301,essv173,essv4786,essv22050,essv4902,essv17491,essv1866,essv5451,essv2302,essv12486,essv6892,essv4062,essv6263,essv4438,essv23384,essv9328,essv15431,essv17846,essv13883,essv15774,essv14194,essv10662,essv7728,essv7805,essv4564,essv14080,essv15375,essv9802,essv16556,essv9652,essv17174,essv2309,essv3821,essv4428,essv8816,essv7429,essv19680,essv244,essv21972,essv2002,essv1160,essv2840,essv11153,essv797,essv3768,essv3555,essv6639,essv2631,essv9459,essv3076,essv6005,essv15454,essv21251,essv10338 M 271 0 0 "" NA07034,NA10830,NA10831,NA10835,NA10855,NA10859,NA10860,NA11995,NA12154,NA12248,NA12264,NA12750,NA12762,NA18505,NA18506,NA18508,NA18523,NA18524,NA18529,NA18532,NA18537,NA18542,NA18545,NA18547,NA18552,NA18558,NA18561,NA18562,NA18571,NA18573,NA18576,NA18605,NA18620,NA18621,NA18623,NA18632,NA18633,NA18635,NA18636,NA18853,NA18854,NA18855,NA18861,NA18862,NA18863,NA18913,NA18940,NA18943,NA18948,NA18949,NA18951,NA18953,NA18956,NA18961,NA18965,NA18966,NA18967,NA18968,NA18969,NA18970,NA18971,NA18976,NA18978,NA18980,NA18981,NA18991,NA18994,NA18995,NA18998,NA19094,NA19103,NA19119,NA19128,NA19131,NA19140,NA19143,NA19144,NA19171,NA19203,NA19207,NA19208,NA19210,NA19211,NA19238 nsv831074 7 100199486 100338967 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446313,nssv1446312 M 95 0 2 "" nsv8186 7 100201558 100204674 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18653,nssv16629,nssv16958,nssv18253,nssv16053,nssv16398 M 31 5 1 Samples from several populations that are part of the HapMap project. "" NA07048,NA12155,NA12740,NA18504,NA18564,NA18972 nsv5871 7 100216471 100235915 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3558,nssv664,nssv11155,nssv6156,nssv2677,nssv5007,nssv9720 M 9 7 0 "" NA12156,NA12878,NA15510,NA18507,NA18555,NA19129,NA19240 nsv7 7 100217357 100232367 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv7 S 1 1 0 "" NA15510 nsv8187 7 100227176 100241427 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18321,nssv16408 M 31 1 1 Samples from several populations that are part of the HapMap project. "" NA18860,NA19144 nsv5872 7 100236577 100267651 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5008,nssv10569,nssv9721,nssv11156,nssv2678,nssv10570,nssv9443,nssv6157,nssv3559,nssv665 M 9 9 0 "" NA12156,NA12878,NA15510,NA18507,NA18517,NA18555,NA18956,NA19129,NA19240 nsv8 7 100237018 100255622 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv8 S 1 1 0 "" NA15510 nsv8188 7 100268656 100278794 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15686 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19007 nsv366275 7 100273217 100274629 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384853 M 24 "" nsv366400 7 100274746 100277928 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384978 M 24 "" nsv5873 7 100277090 100311184 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8408 S 9 1 0 "" NA12156 nsv831075 7 100285732 100510453 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446314 S 95 0 1 "" nsv5874 7 100327483 100337907 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8409 S 9 0 1 "" NA12156 esv2422376 7 100336920 100609906 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161402 S 181 1 0 "" ND00940 nsv366519 7 100385834 100386185 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv385097 M 24 "" esv2752134 7 100393566 100735302 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6988753,essv6984088,essv6984089 M 771 1 0 "" BEC_768 nsv831076 7 100422282 100605109 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446315 S 95 0 1 "" esv2422326 7 100426884 100593566 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161511 S 181 1 0 "" ND04296 nsv5875 7 100463769 100496409 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv666 S 9 1 0 "" NA19240 nsv831077 7 100467644 100677365 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446317,nssv1446316 M 95 0 2 "" dgv236e55 7 100525765 100736694 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv2752136,esv2752135,esv2752137 M 771 3 0 "" BEC_385,BEC_397,SPC_162 nsv517175 7 100553985 100731721 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv690355,nssv699013,nssv682947,nssv653929,nssv669413,nssv655821,nssv657484,nssv683845,nssv654834,nssv676672,nssv672877,nssv674619,nssv674463,nssv684187,nssv682120,nssv664223,nssv678637 M 2026 13 4 "" dgv829n27 7 100561798 100720890 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv464657,nsv464655,nsv464654,nsv464653,nsv464656 M 1557 5 0 "" 1780854465_A,1780854477_A,HGDP01065,NINDS_195,NINDS_88 nsv366777 7 100624478 100625286 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv385355 M 24 "" nsv831078 7 100688380 100850921 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446320,nssv1446319,nssv1446321 M 95 0 3 "" nsv5876 7 100777131 100802353 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3560 S 9 1 0 "" NA12878 nsv818542 7 100796275 100802378 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417208 S 112 0 1 "" NA18558 nsv831079 7 100866930 101060211 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446325,nssv1446323,nssv1446322,nssv1446326,nssv1446324,nssv1446327 M 95 0 6 "" nsv509217 7 100912626 100991090 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620887 S 4 1 0 "" NA15510 nsv521041 7 101051579 101089826 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697750 S 2026 0 1 "" nsv526147 7 101089826 101090884 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702405 S 2026 0 1 "" nsv5878 7 101145444 101180539 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv667 S 9 1 0 "" NA19240 nsv831080 7 101222556 101402062 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446328 S 95 0 1 "" nsv8189 7 101274930 101278700 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16469 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19173 nsv510103 7 101305013 101311013 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624043,nssv621318 M 4 0 2 "" NA15510,NA18994 nsv508474 7 101315327 101346091 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618819 S 4 0 1 "" NA10860 nsv509218 7 101383648 101571898 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620888 S 4 1 0 "" NA15510 nsv831082 7 101399535 101581563 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446330 S 95 1 0 "" dgv2121e1 7 101494175 101666167 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv10048,essv17023,esv313 M 271 0 0 "" NA19099,NA19144 nsv8190 7 101566805 101593011 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17041,nssv16988,nssv16468,nssv18683,nssv14471,nssv15955,nssv15202,nssv16027,nssv18351 M 31 8 1 Samples from several populations that are part of the HapMap project. "" NA11830,NA12155,NA12872,NA18860,NA18942,NA18972,NA18980,NA19144,NA19240 nsv831083 7 101574440 101889820 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446343,nssv1446358,nssv1446376,nssv1446374,nssv1446342,nssv1446339,nssv1446375,nssv1446341,nssv1446349,nssv1446348,nssv1446345,nssv1446346,nssv1446357,nssv1446354,nssv1446353,nssv1446352,nssv1446356,nssv1446355,nssv1446372,nssv1446338,nssv1446371,nssv1446334,nssv1446347,nssv1446364,nssv1446350,nssv1446363,nssv1446360,nssv1446359,nssv1446333,nssv1446332,nssv1446361,nssv1446331,nssv1446344,nssv1446367,nssv1446335,nssv1446366,nssv1446337,nssv1446365,nssv1446336,nssv1446370,nssv1446368,nssv1446369 M 95 0 42 "" nsv464664 7 101619377 101707629 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540541 S 1557 1 0 "" NINDS_222 nsv464665 7 101619377 101707629 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540542 S 1557 0 1 "" NINDS_70 nsv5879 7 101684488 101981754 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1679,nssv2680,nssv11157,nssv3562,nssv9723,nssv10571,nssv10572,nssv9722,nssv5010,nssv9444,nssv3563,nssv6159,nssv5011,nssv6158,nssv668,nssv670,nssv2679,nssv9910 M 9 0 9 "" NA12156,NA12878,NA15510,NA18507,NA18517,NA18555,NA18956,NA19129,NA19240 nsv8192 7 101684772 101927150 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16203,nssv14719,nssv14501,nssv16065,nssv18297,nssv16689,nssv16125,nssv16263,nssv16035,nssv16057,nssv18884,nssv16899,nssv16779,nssv18944,nssv18824,nssv16173,nssv16619,nssv16528,nssv15677,nssv16143,nssv14920,nssv16649,nssv16155,nssv18713,nssv18313,nssv15945,nssv17982,nssv16529,nssv16498,nssv16959,nssv16005,nssv14689,nssv16296,nssv16839,nssv17071,nssv18914,nssv16233,nssv19500,nssv16326,nssv16113,nssv17018,nssv16356,nssv15975,nssv16719,nssv14809,nssv16929,nssv16659,nssv15985,nssv16559,nssv14659,nssv16809,nssv16869,nssv16589,nssv18381,nssv19034,nssv15232,nssv18343,nssv18854,nssv15915,nssv15740,nssv19004,nssv18974,nssv14950,nssv18283,nssv16499 M 31 23 0 Samples from several populations that are part of the HapMap project. "" NA07048,NA10863,NA11830,NA12155,NA12740,NA12802,NA12872,NA18502,NA18504,NA18517,NA18537,NA18563,NA18572,NA18853,NA18860,NA18942,NA18972,NA18980,NA19132,NA19144,NA19173,NA19221,NA19240 nsv471450 7 101707270 101713101 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548309,nssv548310,nssv548312 M 3 "" nsv482111 7 101707270 101713101 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558472 S 1 1 0 "" KB1 dgv23n31 7 101708106 102012000 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis nsv471535,nsv471505,nsv471534,nsv471540,nsv471337 M 3 "" nsv433392 7 101727727 101859417 CNV Gain Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463273 S 9 1 0 Samples from several populations that are part of the HapMap project. "" NA19240 nsv469682 7 101796848 101953924 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649613 M 265 3 20 Samples from several populations that are part of the HapMap project. "" nsv471643 7 101796849 101953924 CNV Gain+Loss Sharp et al 2005 15918152 BAC_aCGH,FISH Eichler Segmental Duplication BAC array nssv549999,nssv550017,nssv550005,nssv550001,nssv549996,nssv550019,nssv550009,nssv550008,nssv549991,nssv550007,nssv549995,nssv549994,nssv550002,nssv550013,nssv550006,nssv550016,nssv550012,nssv549998,nssv549992,nssv550018,nssv549993,nssv550014,nssv549997,nssv550011,nssv550000,nssv550003,nssv550015,nssv550004,nssv550010 M 48 4 25 "" JK1051,JK1058,JK1061,JK1688,NA10492,NA10494,NA10495,NA10967,NA10969,NA10976,NA10979,NA11323,NA11521,NA11523,NA15725,NA15726,NA15728,NA15729,NA15730,NA15731,NA16688,NA16689,NA17014,NA17017,NA17051,NA17052,NA17058,NA17059,P86GA nsv509219 7 101797290 101931078 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619497,nssv619498,nssv619496,nssv620889 M 4 2 0 "" NA10860,NA15510 nsv471451 7 101813883 101851140 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548315,nssv548314,nssv548313 M 3 "" nsv482112 7 101813883 101851140 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558473 S 1 1 0 "" KB1 nsv9 7 101825756 101930685 CNV Loss Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv9 S 1 0 1 "" NA15510 nsv482113 7 101871425 101906133 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558474 S 1 1 0 "" KB1 nsv469620 7 101890343 102048014 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649545 M 265 0 3 Samples from several populations that are part of the HapMap project. "" nsv8193 7 101928516 101931281 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18411 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18860 nsv8194 7 101941101 101976762 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19530,nssv15800,nssv18471 M 31 0 3 Samples from several populations that are part of the HapMap project. "" NA18853,NA18860,NA19221 nsv442085 7 101945797 101952566 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" esv2752138 7 101952271 102381086 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6985826,essv6985827,essv6989503,essv6990150,essv6985828 M 771 0 1 "" SPC_61 nsv464667 7 102080205 102218143 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540543 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00736 nsv365999 7 102082672 102083010 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384577 M 24 "" nsv5880 7 102099109 102144422 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3564 S 9 0 1 "" NA12878 nsv5881 7 102204439 102249650 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8410 S 9 0 1 "" NA12156 nsv517148 7 102218143 102218346 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv653870,nssv682362,nssv661239,nssv666404,nssv678798,nssv677288 M 2026 0 6 "" nsv526764 7 102295777 102331202 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703116 S 2026 0 1 "" nsv831084 7 102372859 102558921 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446377,nssv1446378 M 95 2 0 "" nsv5882 7 102383167 102401392 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5012 S 9 1 0 "" NA19129 nsv365403 7 102394495 102395174 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv383981 M 24 "" nsv5883 7 102401398 102408644 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8411 S 9 0 1 "" NA12156 nsv5884 7 102556117 102591992 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv671,nssv2772 M 9 2 0 "" NA18555,NA19240 nsv5885 7 102621535 102656166 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2773 S 9 1 0 "" NA18555 nsv831085 7 102734623 102936339 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446379 S 95 1 0 "" nsv5886 7 102836664 102868508 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1680 S 9 1 0 "" NA18555 nsv516122 7 102868518 102885776 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv679907,nssv666355,nssv695828 M 2026 3 0 "" dgv424n21 7 102969388 102973848 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv524344,nsv518040 M 2026 0 2 "" nsv524101 7 102984993 102985360 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699976 S 2026 0 1 "" nsv523887 7 102990555 102991355 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699730 S 2026 0 1 "" nsv523031 7 103051740 103064450 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698714 S 2026 1 0 "" nsv523466 7 103141086 103161476 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699225 S 2026 0 1 "" nsv517254 7 103161476 103161825 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv664696,nssv654126 M 2026 0 2 "" nsv818543 7 103210828 103215083 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415656,nssv1415657 M 112 2 0 "" NA10835,NA12248 nsv507406 7 103389559 103395559 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621883 S 4 1 0 "" NA10860 nsv526062 7 103411548 103485036 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702301 S 2026 1 0 "" nsv527105 7 103419953 103430083 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703485 S 2026 0 1 "" nsv366914 7 103468903 103469209 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv385492 M 24 "" nsv510104 7 103574989 103580989 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621319 S 4 0 1 "" NA15510 nsv522695 7 103614924 103614979 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv706105 S 2026 0 1 "" nsv510105 7 103920603 103926603 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624044,nssv618271,nssv621320 M 4 0 3 "" CHM,NA15510,NA18994 nsv516749 7 103945912 103950244 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv688233,nssv673808,nssv670622 M 2026 0 3 "" nsv5887 7 103995201 104085555 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8412,nssv9724,nssv672 M 9 0 3 "" NA12156,NA18507,NA19240 dgv425n21 7 104005224 104080658 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv522743,nsv528392 M 2026 2 0 "" nsv831086 7 104016454 104190717 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446380,nssv1446381 M 95 0 2 "" nsv437560 7 104055438 104076272 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467441 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19240 nsv8195 7 104057855 104071081 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17131,nssv15830 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18853,NA19240 nsv442092 7 104059592 104066601 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv516060 7 104212269 104216353 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv692072,nssv665939 M 2026 0 2 "" nsv526422 7 104212269 104226931 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702723 S 2026 0 1 "" nsv437561 7 104220641 104241522 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467442 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19221 nsv437995 7 104226931 104235192 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv468991,nssv468990,nssv468989,nssv468988 M 269 0 4 Samples from several populations that are part of the HapMap project. "" NA19203,NA19205,NA19221,NA19222 dgv237e55 7 104331563 104747193 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv34580,esv34588 M 771 2 0 "" NA12802,NA12814 dgv2122e1 7 104352201 104802443 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv20688,essv24498,essv23900,essv25101,esv825 M 271 0 0 "" NA12802,NA12814 nsv8196 7 104357510 104749929 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14980 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA12802 nsv366339 7 104586247 104586336 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384917 M 24 "" nsv5889 7 104643391 104653669 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1681 S 9 1 0 "" NA18555 nsv464668 7 104682644 104802443 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540544 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00791 nsv8197 7 104754871 104760916 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16117,nssv16458 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA11830,NA18564 nsv528739 7 104912009 104940068 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705395 S 2026 0 1 "" nsv5890 7 104977265 105001228 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9725 S 9 1 0 "" NA18507 nsv524191 7 104980412 104984510 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700074 S 2026 0 1 "" nsv464669 7 105098152 105127686 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540545 S 1557 0 1 "" 1798860102_A nsv5891 7 105168973 105211789 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8414 S 9 0 1 "" NA12156 dgv2123e1 7 105179617 105181392 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv22787,esv899,essv24161 M 271 0 0 "" NA12751,NA12753 nsv520366 7 105311132 105340276 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv683846,nssv663255 M 2026 0 2 "" nsv365599 7 105327942 105328279 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384177 M 24 "" nsv526450 7 105385568 105393624 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702753 S 2026 0 1 "" nsv5892 7 105553111 105574005 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv673,nssv5013 M 9 2 0 "" NA19129,NA19240 nsv510106 7 105725915 105731915 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618272 S 4 0 1 "" CHM nsv507407 7 106098166 106104166 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620387,nssv621884 M 4 2 0 "" NA10860,NA15510 nsv831087 7 106267416 106466411 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446382 S 95 1 0 "" esv32754 7 106317759 106322670 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93895 S 51 0 1 "" 21634 nsv7404 7 106612686 106698218 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10573,nssv6160 M 9 0 0 "" NA12156,NA18956 nsv510107 7 106632681 106638681 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618273 S 4 0 1 "" CHM nsv366928 7 106848046 106848095 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv385506 M 24 "" nsv518018 7 106911661 106915666 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695430 S 2026 0 1 "" nsv507408 7 106962567 106968567 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617745,nssv623013,nssv620388 M 4 3 0 "" CHM,NA15510,NA18994 nsv5893 7 107032449 107065991 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5014 S 9 1 0 "" NA19129 nsv831088 7 107091051 107287631 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446383 S 95 0 1 "" nsv365319 7 107157616 107157669 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv383897 M 24 "" nsv365697 7 107277945 107278087 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384275 M 24 "" nsv831089 7 107281569 107471191 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446385 S 95 0 1 "" nsv831090 7 107380601 107605147 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446387,nssv1446386,nssv1446389,nssv1446390,nssv1446388 M 95 0 5 "" nsv5894 7 107404609 107436959 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2774,nssv674,nssv9911,nssv6161,nssv5015,nssv10574,nssv3565 M 9 7 0 "" NA12156,NA12878,NA18507,NA18555,NA18956,NA19129,NA19240 nsv509220 7 107410923 107442398 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620890,nssv618067,nssv619499,nssv623517 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv365475 7 107412024 107412117 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384053 M 24 "" nsv5895 7 107472617 107504928 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv675 S 9 1 0 "" NA19240 nsv366315 7 108095396 108095496 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384893 M 24 "" dgv2124e1 7 108189596 108254349 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv919,essv3429 M 271 0 0 "" NA18956 nsv442060 7 108189966 108231552 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv831091 7 108350169 108517595 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446391 S 95 1 0 "" nsv831094 7 108400570 108575544 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446392 S 95 1 0 "" nsv520712 7 108585890 108593137 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv674485,nssv688272 M 2026 0 2 "" nsv5896 7 108992635 109066992 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8415,nssv11158,nssv9445,nssv676 M 9 0 4 "" NA12156,NA15510,NA18517,NA19240 dgv2125e1 7 109003931 109201570 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv22337,esv337,essv17507,essv14278,essv11805 M 271 0 0 "" NA06985,NA12762,NA18521,NA19194 nsv8198 7 109015556 109017431 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18743 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18972 nsv520896 7 109018056 109054061 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694406 S 2026 0 1 "" nsv10 7 109020895 109055883 CNV Loss Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv10 S 1 0 1 "" NA15510 nsv508475 7 109023177 109056718 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619998 S 4 0 1 "" NA15510 nsv8199 7 109024063 109050963 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16558,nssv15010,nssv14839,nssv15275,nssv16989,nssv16679,nssv16293,nssv15964,nssv17161,nssv19064,nssv15632,nssv16386,nssv18327,nssv18012,nssv15716,nssv16488,nssv18501,nssv18373,nssv14531,nssv16036,nssv19560,nssv15860,nssv15262,nssv18803,nssv15707,nssv17048,nssv15414,nssv16185 M 31 28 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10847,NA10863,NA12155,NA12740,NA12802,NA12872,NA18502,NA18504,NA18517,NA18537,NA18552,NA18563,NA18564,NA18572,NA18853,NA18860,NA18942,NA18972,NA18975,NA19007,NA19132,NA19144,NA19173,NA19221,NA19240 dgv133n17 7 109029953 109049656 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437563,nsv437564,nsv437565,nsv437562 M 60 0 4 "" NA18872,NA18914,NA19120,NA19129 nsv437996 7 109035745 109045181 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv468994,nssv469021,nssv469054,nssv469017,nssv469035,nssv469036,nssv469049,nssv469044,nssv469029,nssv469001,nssv469018,nssv469026,nssv468999,nssv469046,nssv469034,nssv469053,nssv469038,nssv469050,nssv468998,nssv469004,nssv469048,nssv469028,nssv469023,nssv469043,nssv469022,nssv469005,nssv469033,nssv469027,nssv469012,nssv469006,nssv469003,nssv468995,nssv469015,nssv469031,nssv469047,nssv469032,nssv469051,nssv469040,nssv469013,nssv469002,nssv468992,nssv469000,nssv469045,nssv469011,nssv469024,nssv468996,nssv469025,nssv469037,nssv469009,nssv469042,nssv469010,nssv468993,nssv469007,nssv469039,nssv469016,nssv469014,nssv469020 M 269 0 37 Samples from several populations that are part of the HapMap project. "" NA06994,NA07019,NA07022,NA07055,NA07056,NA07357,NA10846,NA10851,NA10859,NA11830,NA11993,NA12234,NA12707,NA12717,NA12801,NA18515,NA18566,NA18608,NA18609,NA18620,NA18624,NA18870,NA18872,NA18913,NA18914,NA18952,NA18964,NA18973,NA18980,NA18981,NA19116,NA19120,NA19128,NA19129,NA19140,NA19142,NA19202 esv33987 7 109038206 109046954 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98847,essv97596,essv101133,essv100756,essv96795,essv101054,essv95075,essv98309,essv94072,essv94452,essv97037,essv95689,essv95487,essv93075,essv95278,essv94532,essv99067,essv92871,essv93764,essv96645,essv97268,essv98562,essv96039,essv93301,essv99661,essv92565,essv98009,essv97622,essv100243,essv100436,essv99371,essv98420,essv96390 M 51 33 0 "" 21606,21616,21618,21656,21659,21693,21721,21772,21802,21808,21817,21841,21847,21863,21872,21932,21938,21939,21972,22011,22075,22085,22127,22170,22217,22233,22259,22278,22286,22300,22335,22352,22371 nsv831095 7 109112115 109306191 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446393 S 95 1 0 "" nsv831096 7 109277103 109446394 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446394 S 95 0 1 "" dgv2126e1 7 109357547 109506183 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv10472,esv57 M 271 0 0 "" NA18515 nsv5897 7 109754772 109802185 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9726,nssv3566 M 9 0 2 "" NA12878,NA18507 nsv437997 7 109768795 109779182 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv469061,nssv469057,nssv469056,nssv469060,nssv469055,nssv469058,nssv469062,nssv469059 M 269 0 8 Samples from several populations that are part of the HapMap project. "" NA18570,NA18593,NA18632,NA18636,NA18952,NA18956,NA18991,NA19000 nsv520893 7 109774973 109778264 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697674 S 2026 1 0 "" nsv8200 7 109775821 109783010 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16709,nssv15746,nssv14869,nssv18531,nssv16215,nssv16323,nssv15040,nssv16147,nssv18833,nssv15890,nssv15662,nssv17108,nssv18357,nssv15305,nssv19590,nssv16518,nssv16015,nssv15737,nssv17191,nssv18042,nssv16446 M 31 20 1 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10847,NA10863,NA11830,NA12155,NA12802,NA18502,NA18537,NA18563,NA18564,NA18572,NA18853,NA18860,NA18972,NA18980,NA19007,NA19132,NA19173,NA19221,NA19240 nsv517674 7 109776365 109778264 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv655533,nssv659883,nssv655847,nssv658480,nssv684845,nssv667808,nssv677498,nssv659488,nssv679908,nssv671880,nssv668087,nssv690201,nssv655922,nssv682143,nssv678336,nssv658111,nssv669101,nssv658727,nssv665525,nssv667694,nssv656131,nssv654415,nssv652989,nssv673353,nssv652785,nssv690666,nssv670637,nssv660084,nssv662476,nssv657729,nssv677954,nssv662801,nssv693794,nssv662439,nssv655436,nssv670546,nssv685429,nssv675120,nssv691317,nssv654923,nssv677003,nssv654939,nssv655015,nssv656022,nssv654764,nssv687507,nssv685653,nssv691964,nssv661748,nssv667206,nssv686787,nssv670987,nssv690186 M 2026 2 51 "" nsv433483 7 109776365 109778936 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463364 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA18507 nsv464670 7 109776365 109786112 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540546 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01172 nsv527727 7 109776365 109786112 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704208 S 2026 0 1 "" dgv426n21 7 109866378 109896646 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv528095,nsv522720 M 2026 0 2 "" nsv464671 7 109896646 109936963 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540547 S 1557 1 0 "" NINDS_208 nsv464673 7 109911978 110048307 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540549 S 1557 1 0 "" 1798860072_A nsv442061 7 110022961 110026445 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv365322 7 110078702 110078702 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv383900 M 24 "" nsv526883 7 110103087 110103530 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703241 S 2026 1 0 "" dgv2127e1 7 110117249 110381800 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv63,essv15452 M 271 0 0 "" NA18505 dgv235n6 7 110130485 110130671 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv366373,nsv365591 M 24 "" nsv11 7 110172418 110173175 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv11 S 1 1 0 "" NA15510 nsv5898 7 110172418 110173175 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv11159 S 9 1 0 "" NA15510 nsv515693 7 110322132 110337553 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv670724,nssv664439,nssv685523,nssv665621,nssv664556,nssv685131,nssv662032 M 2026 7 0 "" nsv464674 7 110369988 110455834 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540550 S 1557 0 1 "" 1780862532_A esv2752141 7 110381921 110707542 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6985211,essv6985210 M 771 0 1 "" SPC_124 essv21989 7 110394862 110559484 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA11995 dgv2128e1 7 110394862 110898776 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv868,essv6757 M 271 0 0 "" NA18562 nsv464675 7 110407759 110445504 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540551 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01387 dgv427n21 7 110407759 110706804 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv519251,nsv527155,nsv528235 M 2026 0 3 "" nsv437027 7 110407816 110486802 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv466908 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA10861 nsv519432 7 110414769 110426787 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv656187,nssv657515,nssv673098,nssv696882 M 2026 0 4 "" nsv818545 7 110414769 110475669 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415901,nssv1415902 M 112 0 2 "" NA10861,NA11995 dgv29e196 7 110415677 110752025 CNV Deletion Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array esv2422443,esv2422497 M 181 0 2 "" ND01675,ND04534 dgv428n21 7 110426787 110959694 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv527658,nsv517394 M 2026 0 39 "" nsv437998 7 110432049 110475669 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv469064,nssv469065,nssv469066,nssv469067 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA10861,NA11995 nsv464676 7 110498177 110780644 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540552 S 1557 0 1 "" 1780854097_A nsv464677 7 110552306 110672863 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540553 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00550 nsv437566 7 110572654 110582671 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467447 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19194 esv34648 7 110575000 110708000 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6988185,essv6979483,essv6979482,essv6989097 M 771 0 1 "" NA18562 dgv2129e1 7 110599175 110855621 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv18226,essv933 M 271 0 0 "" NA12057,NA18949 essv2096 7 110599175 110898776 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18949 esv2752142 7 110601000 110912415 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6983138,essv6989740,essv6989347,essv6983137 M 771 0 1 "" BEC_546 nsv8201 7 110614192 110616861 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15920 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18853 nsv464678 7 110617273 110623515 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540554 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00463 nsv464679 7 110623515 110754307 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540555 S 1557 1 0 "" 1780854517_A nsv442062 7 110631376 110636304 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv437567 7 110638922 110674688 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467448 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18500 nsv818546 7 110638922 110706804 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416248 S 112 0 1 "" NA12057 nsv442105 7 110642526 110650833 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv8203 7 110659025 110662110 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16177,nssv15994 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA10839,NA11830 nsv464680 7 110672863 110777561 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540556 S 1557 0 1 "" 1780854210_A nsv818547 7 110672863 110836112 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417387 S 112 0 1 "" NA18949 nsv8204 7 110688431 110752342 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14561,nssv16588 M 31 1 1 Samples from several populations that are part of the HapMap project. "" NA12872,NA19144 nsv464684 7 110751483 110780644 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540558 S 1557 0 1 "" 1780862345_A nsv464685 7 110753847 110872396 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540559 S 1557 0 1 "" NINDS_29 nsv366312 7 110773176 110773247 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384890 M 24 "" nsv464686 7 110785151 110923033 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540560 S 1557 0 1 "" 1780854491_A nsv464687 7 110822124 110916706 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540561 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00664 esv2752143 7 110822944 110930534 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6983721,essv6989846,essv6983720 M 771 0 1 "" BEC_617 nsv5900 7 110841208 110856507 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5016 S 9 0 1 "" NA19129 nsv8205 7 110842210 110851218 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16739 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19173 esv32945 7 110881190 110901813 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97692 S 51 0 1 "" 22278 nsv507409 7 110910296 110916296 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623014,nssv620389,nssv621885 M 4 3 0 "" NA10860,NA15510,NA18994 nsv5901 7 111022234 111066919 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8416 S 9 0 1 "" NA12156 esv2422365 7 111166970 112221878 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161410 S 181 1 0 "" ND01757 nsv464689 7 111182467 112334786 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540562 S 1557 1 0 "" NINDS_40 nsv516034 7 111324918 111353535 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv661159,nssv676394,nssv659362,nssv663451,nssv665845 M 2026 0 5 "" nsv5902 7 111546079 111591216 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8417 S 9 0 1 "" NA12156 nsv5903 7 111592579 111601802 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5017 S 9 1 0 "" NA19129 nsv831097 7 111594788 111707124 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446397,nssv1446396 M 95 2 0 "" nsv507410 7 111826970 111832970 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621886 S 4 1 0 "" NA10860 nsv5904 7 111863015 111892940 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv11160 S 9 1 0 "" NA15510 nsv507411 7 111868761 111874761 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623015,nssv621887,nssv617746,nssv620390 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv523811 7 111889885 111898118 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699641 S 2026 0 1 "" nsv7405 7 111954566 120834640 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9727 S 9 0 0 "" NA18507 nsv528753 7 111967947 111972154 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705415 S 2026 0 1 "" esv2752144 7 111992323 112093875 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6986388,essv6983268 M 771 1 0 "" BEC_560 esv2752145 7 112028000 112094000 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6983969,essv6987462 M 771 1 0 "" BEC_738 nsv5905 7 112039376 112115748 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6162,nssv10575 M 9 0 2 "" NA12156,NA18956 dgv2130e1 7 112086078 112362579 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv12601,esv419 M 271 0 0 "" NA19098 nsv442063 7 112108071 112112012 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv5906 7 112225870 112261153 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3567 S 9 1 0 "" NA12878 nsv5907 7 112289651 112315593 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv677 S 9 1 0 "" NA19240 nsv5908 7 112474472 112506994 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6163 S 9 1 0 "" NA12156 nsv464690 7 112502739 112583723 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540563 S 1557 0 1 "" 1780862576_A nsv5909 7 112516676 112543050 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3568 S 9 1 0 "" NA12878 nsv831098 7 112530662 112684795 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446398 S 95 1 0 "" nsv464691 7 112733818 112742038 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540564 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00068 nsv831099 7 112782654 112948201 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446399 S 95 0 1 "" nsv510967 7 112997148 113017903 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622382 S 4 0 0 "" NA10860 nsv5911 7 113004508 113040794 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5018,nssv10576,nssv1682,nssv3569,nssv678 M 9 0 5 "" NA12878,NA18555,NA18956,NA19129,NA19240 nsv508476 7 113008982 113017903 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619999,nssv622583,nssv617351 M 4 0 3 "" CHM,NA15510,NA18994 nsv366396 7 113010128 113016173 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384974 M 24 "" nsv831100 7 113055027 113211379 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446400 S 95 1 0 "" nsv510108 7 113063414 113069414 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622145 S 4 0 1 "" NA10860 nsv5912 7 113439621 113476478 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8418 S 9 0 1 "" NA12156 nsv524438 7 113457335 113476868 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700368 S 2026 0 1 "" nsv464692 7 113515078 113592197 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540565 S 1557 0 1 "" 1780862574_A nsv831101 7 113525514 113725786 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446401 S 95 1 0 "" dgv236n6 7 113547453 113547781 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv366402,nsv366764 M 24 "" nsv521910 7 113674386 113680145 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694681 S 2026 0 1 "" nsv464693 7 113680145 113739257 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540566 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00043 nsv5913 7 113780852 113813378 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3570 S 9 1 0 "" NA12878 nsv365730 7 113846383 113846383 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384308 M 24 "" nsv526154 7 114176142 114179620 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702413 S 2026 0 1 "" nsv510109 7 114291399 114297399 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624045 S 4 0 1 "" NA18994 nsv521891 7 114295925 114308233 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694663 S 2026 0 1 "" nsv520126 7 114738929 114740735 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv676435,nssv661029 M 2026 0 2 "" nsv831102 7 114782264 114945318 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446403,nssv1446402 M 95 2 0 "" nsv510110 7 115067914 115073914 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624046 S 4 0 1 "" NA18994 dgv2131e1 7 115112000 115149266 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1246,essv3250 M 271 0 0 "" NA18967 nsv831103 7 115121645 115268164 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446404 S 95 0 1 "" nsv442064 7 115177404 115180384 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv365487 7 115178046 115179145 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384065 M 24 "" nsv5914 7 115321661 115323188 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3571 S 9 1 0 "" NA12878 nsv520579 7 115374532 115377608 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694389 S 2026 1 0 "" nsv12 7 115511969 115546984 CNV Loss Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv12 S 1 0 1 "" NA15510 nsv5915 7 115511969 115546984 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv11161 S 9 0 1 "" NA15510 nsv507412 7 115520324 115526324 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620391 S 4 1 0 "" NA15510 nsv8206 7 115523520 115535856 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv14591,nssv16353,nssv16207,nssv15692 M 31 0 4 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA11830,NA12872 dgv134n17 7 115523976 115537465 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437028,nsv437029 M 60 0 2 "" NA07029,NA12752 nsv831105 7 115527476 115699897 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446405,nssv1446408 M 95 1 1 "" nsv517460 7 115530903 115531632 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv680493,nssv672037,nssv670260,nssv670746,nssv679549,nssv680660,nssv682033,nssv668888,nssv671818,nssv693360,nssv655978,nssv652990,nssv652084,nssv674960,nssv655223,nssv685545,nssv664117,nssv681789,nssv683571,nssv669042,nssv668706,nssv691760,nssv658481,nssv675218,nssv688134,nssv664490,nssv665526,nssv693617,nssv658102,nssv665349,nssv666381,nssv672232,nssv694043,nssv664224,nssv667221,nssv672387,nssv656622,nssv688431,nssv654551,nssv688408,nssv687233,nssv681027,nssv692073,nssv655487,nssv659950,nssv670864,nssv687060,nssv684553,nssv672022,nssv660965,nssv652748,nssv657753 M 2026 0 52 "" nsv433484 7 115530903 115533864 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463365 S 9 0 1 "" NA15510 nsv528213 7 115530903 115539342 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704774 S 2026 0 1 "" nsv437999 7 115531632 115533864 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv469069,nssv469070,nssv469071,nssv469068 M 269 0 4 Samples from several populations that are part of the HapMap project. "" NA06994,NA07029,NA12752,NA12760 nsv524749 7 115543880 115550080 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700740 S 2026 0 1 "" nsv831106 7 115573634 115795471 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446409 S 95 1 0 "" nsv366908 7 115960149 115960149 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv385486 M 24 "" nsv831107 7 116008685 116243417 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446410 S 95 1 0 "" nsv366350 7 116163878 116167486 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384928 M 24 "" nsv527321 7 116228999 116254754 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703746 S 2026 0 1 "" nsv831108 7 116343485 116545962 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446411 S 95 1 0 "" nsv5916 7 116419172 116464521 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6164 S 9 0 1 "" NA12156 nsv366395 7 116435969 116436279 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384973 M 24 "" nsv516761 7 116482112 116486797 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv670665,nssv658080 M 2026 0 2 "" nsv5917 7 116866609 116898926 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10577 S 9 1 0 "" NA18956 nsv464695 7 116936722 116987467 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540568 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01267 nsv366401 7 117045902 117045968 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384979 M 24 "" nsv5918 7 117054549 117089336 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3573 S 9 1 0 "" NA12878 nsv5919 7 117111731 117142783 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10578 S 9 1 0 "" NA18956 esv2752146 7 117333000 117386000 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6982434,essv6989623 M 771 0 1 "" BEC_442 esv33380 7 117362422 117387428 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv94606 S 51 0 1 "" 21932 nsv510111 7 117404432 117410432 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624047 S 4 0 1 "" NA18994 nsv5920 7 117427198 117460687 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv680 S 9 1 0 "" NA19240 nsv518701 7 117515218 117522715 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696151 S 2026 1 0 "" nsv510112 7 117563549 117569549 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621321 S 4 0 1 "" NA15510 nsv438000 7 117656355 117666796 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv469072,nssv469073 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA12801,NA12813 nsv5922 7 117718516 117772780 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9446 S 9 0 1 "" NA18517 dgv66n64 7 117723946 117755132 CNV Loss Wang_et_al_2007 17921354 SNP_array nsv818548,nsv818549 M 112 0 2 "" NA18517,NA19171 nsv517111 7 117729173 117755132 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv665158,nssv664129,nssv688213,nssv676493,nssv688055,nssv680756,nssv654580,nssv660347,nssv662780,nssv687338,nssv675740,nssv687946,nssv680363,nssv676123,nssv661504,nssv664241,nssv652587,nssv655739,nssv677034,nssv667010,nssv686320,nssv672748,nssv691128,nssv685568,nssv672513,nssv685108,nssv661796,nssv677583,nssv690465,nssv668159,nssv663992,nssv674424,nssv661749,nssv669164,nssv671312,nssv679655,nssv665636,nssv653802,nssv692564,nssv671597,nssv658904,nssv668824,nssv689526,nssv661030,nssv673911,nssv656664,nssv675185,nssv662092,nssv687274,nssv652150,nssv682005,nssv677109 M 2026 0 52 "" nsv442065 7 117729692 117755323 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv5923 7 117839923 117852967 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3574 S 9 1 0 "" NA12878 nsv831109 7 117894544 118095729 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446412,nssv1446413 M 95 2 0 "" nsv5924 7 118045795 118080570 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3575 S 9 1 0 "" NA12878 nsv831110 7 118137291 118333313 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446414 S 95 0 1 "" nsv442066 7 118286646 118288288 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv528448 7 118327366 118338401 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705047 S 2026 0 1 "" nsv519320 7 118363317 118369030 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696790 S 2026 0 1 "" nsv517340 7 118369052 118372753 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv664050,nssv661948,nssv653871,nssv653842,nssv670666,nssv675099,nssv653048 M 2026 0 7 "" nsv5925 7 118398653 118435536 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6165 S 9 0 1 "" NA12156 nsv365787 7 118425211 118428705 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384365 M 24 "" nsv521831 7 118462377 118611483 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694604 S 2026 0 1 "" nsv831111 7 118478492 118660097 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446415 S 95 1 0 "" nsv464697 7 118490590 118563562 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540569 S 1557 0 1 "" 1780862470_A nsv518699 7 118517364 118569444 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694264 S 2026 0 1 "" dgv830n27 7 118520341 118567103 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv464703,nsv464698 M 1557 0 2 "" HGDP00039,HGDP01286 nsv508477 7 118527338 118530849 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618820 S 4 0 1 "" NA10860 nsv526208 7 118539632 118569444 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702471 S 2026 0 1 "" nsv464704 7 118552931 118727146 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540572 S 1557 0 1 "" NINDS_189 nsv515757 7 118567103 118569444 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv668649,nssv693710,nssv676599,nssv674133,nssv664697 M 2026 0 5 "" nsv508478 7 118705998 118721658 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622584 S 4 0 1 "" NA18994 nsv437570 7 118734601 118755694 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467451 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19173 nsv437569 7 118734601 118765767 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467450 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18521 nsv8207 7 118746869 118758391 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16799,nssv15950 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18853,NA19173 nsv438001 7 118749072 118750078 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv469079,nssv469078,nssv469076,nssv469077 M 269 0 4 Samples from several populations that are part of the HapMap project. "" NA18521,NA18522,NA19172,NA19173 nsv442129 7 118750929 118756398 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv524225 7 118887368 119200583 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700113 S 2026 0 1 "" nsv5926 7 118943991 118983592 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9447 S 9 0 1 "" NA18517 nsv515721 7 119171243 119206492 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv664557,nssv688874 M 2026 0 2 "" nsv831112 7 119179120 119370570 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446421,nssv1446420,nssv1446416,nssv1446422,nssv1446417,nssv1446419 M 95 0 6 "" nsv831113 7 119277466 119480228 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446423 S 95 1 0 "" nsv521233 7 119279969 119291184 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697860 S 2026 0 1 "" nsv366381 7 119334011 119335378 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384959 M 24 "" nsv5927 7 119467023 119499425 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10579 S 9 1 0 "" NA18956 nsv5928 7 119579999 119611894 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv681 S 9 1 0 "" NA19240 nsv516686 7 119609794 119817035 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv670150,nssv695846,nssv686091 M 2026 0 3 "" nsv517677 7 119899100 119906697 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv687275,nssv667098,nssv679550,nssv692074,nssv677461,nssv668190,nssv692436,nssv671434,nssv678337,nssv684788,nssv652808,nssv661191 M 2026 0 12 "" nsv818550 7 119899100 119906697 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416817,nssv1416806 M 112 0 2 "" NA10857,NA12043 nsv524688 7 119899100 119921300 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700660 S 2026 0 1 "" nsv5929 7 120061542 120107423 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6166 S 9 0 1 "" NA12156 nsv437030 7 120144618 120156264 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv466911 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA12752 nsv438002 7 120150571 120153489 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv469081,nssv469080 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA12752,NA12760 nsv831114 7 120189575 120398461 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446424 S 95 0 1 "" nsv5930 7 120281809 120313810 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3576 S 9 1 0 "" NA12878 nsv523626 7 120332220 120357163 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699424 S 2026 0 1 "" nsv528485 7 120340160 120357163 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705088 S 2026 0 1 "" dgv2132e1 7 120502410 120587277 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv998,essv3441 M 271 0 0 "" NA18956 dgv2133e1 7 120653822 120683906 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv889,essv6540 M 271 0 0 "" NA18624 nsv366684 7 120677924 120677924 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv385262 M 24 "" nsv442067 7 120755938 120780244 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv518821 7 120759760 120771347 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694277 S 2026 0 1 "" nsv365800 7 121251584 121252726 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384378 M 24 "" nsv523632 7 121348646 121396019 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699432 S 2026 0 1 "" nsv5931 7 121538088 121582545 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1683 S 9 0 1 "" NA18555 nsv524192 7 121997372 122812473 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700075 S 2026 1 0 "" nsv5933 7 122261711 122296190 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv682 S 9 1 0 "" NA19240 nsv520314 7 122385695 122481507 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv662781,nssv692566 M 2026 2 0 "" esv34917 7 122392587 122472000 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6980628,essv6980627,essv6980626 M 771 1 0 "" NA19238 dgv2134e1 7 122392587 122483286 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1022,essv12058 M 271 0 0 "" NA19238 nsv818551 7 122402479 122481507 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416846 S 112 1 0 "" NA19238 nsv831116 7 122681563 122853927 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446426,nssv1446425 M 95 1 1 "" nsv508479 7 122785816 122846096 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622585 S 4 0 1 "" NA18994 nsv528096 7 123381624 123384547 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704634 S 2026 0 1 "" nsv831117 7 123551327 123683137 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446436,nssv1446442,nssv1446435,nssv1446441,nssv1446437,nssv1446443,nssv1446438,nssv1446439,nssv1446427,nssv1446430,nssv1446428,nssv1446434,nssv1446432,nssv1446431,nssv1446433 M 95 0 15 "" nsv471452 7 123710376 123710960 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548316,nssv548317,nssv548318 M 3 "" nsv525687 7 123732138 123790395 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701845 S 2026 0 1 "" nsv831118 7 123766218 123941478 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446444 S 95 1 0 "" nsv366106 7 123982261 123982358 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384684 M 24 "" nsv525729 7 124131987 124143524 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701893 S 2026 1 0 "" nsv366455 7 124186976 124186976 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv385033 M 24 "" nsv437571 7 124248492 124253175 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467452 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19129 nsv438003 7 124252006 124252551 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv469083,nssv469082 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA19127,NA19129 nsv464708 7 124297707 124399230 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540574 S 1557 0 1 "" 1780854496_A nsv831119 7 124307960 124484070 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446445 S 95 1 0 "" nsv5934 7 124358525 124390653 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5019 S 9 1 0 "" NA19129 esv2422188 7 124376824 124848154 CNV Deletion Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161441 S 181 0 1 "" ND04586 nsv507413 7 124471542 124477542 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621888 S 4 1 0 "" NA10860 nsv507414 7 124517314 124523314 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620392 S 4 1 0 "" NA15510 nsv818552 7 124551584 124556036 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417676 S 112 1 0 "" NA18994 nsv831120 7 124638725 124801647 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446450,nssv1446448,nssv1446452,nssv1446449,nssv1446453,nssv1446457,nssv1446456,nssv1446455,nssv1446454,nssv1446447,nssv1446446 M 95 11 0 "" nsv516896 7 124770650 124780121 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv686030,nssv690636,nssv690717,nssv681362,nssv658846,nssv673271,nssv653473 M 2026 0 7 "" nsv464710 7 124790921 124881430 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540575 S 1557 0 1 "" NINDS_172 nsv529033 7 124813494 124839135 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705744 S 2026 1 0 "" nsv365821 7 124858172 124858172 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384399 M 24 "" nsv520188 7 124964645 125056129 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697270 S 2026 0 1 "" nsv5935 7 124968770 125004097 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3577 S 9 1 0 "" NA12878 nsv520060 7 125032831 125176451 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv677930,nssv679604,nssv704635,nssv672993,nssv660348,nssv698351,nssv679451,nssv684656 M 2026 0 8 "" nsv5936 7 125041149 125069599 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8420 S 9 0 1 "" NA12156 nsv510113 7 125056382 125062382 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621323 S 4 0 1 "" NA15510 nsv442068 7 125066653 125069994 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv429n21 7 125160166 125327257 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv518236,nsv525348 M 2026 0 2 "" esv33257 7 125165370 125337301 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv95758 S 51 0 1 "" 21841 nsv518344 7 125238607 125324645 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695772 S 2026 0 1 "" essv23857 7 125254760 125416405 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA07022 dgv2135e1 7 125254760 125488816 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv170,essv7272 M 271 0 0 "" NA18592 nsv8208 7 125254926 125256893 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16045 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18980 nsv8209 7 125263601 125271179 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17019,nssv15722 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA12740 nsv464711 7 125455659 125534113 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540576 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01253 nsv521671 7 125501896 125502616 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698289 S 2026 0 1 "" nsv518854 7 125554904 125645667 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696309 S 2026 0 1 "" nsv507415 7 125614680 125620680 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623016 S 4 1 0 "" NA18994 nsv508480 7 125628052 125652154 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622586,nssv617352 M 4 0 2 "" CHM,NA18994 nsv5937 7 125630387 125669963 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5020,nssv6167,nssv3578 M 9 0 3 "" NA12156,NA12878,NA19129 nsv8210 7 125639054 125645504 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15070,nssv14621,nssv15980,nssv14899,nssv18387,nssv18561,nssv18863,nssv16383,nssv18132,nssv17221,nssv16829,nssv17049,nssv15474,nssv16024,nssv16237,nssv19620,nssv18403,nssv16245,nssv15806,nssv15782,nssv16548,nssv19124,nssv16476,nssv16066,nssv16618 M 31 0 25 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10863,NA11830,NA12740,NA12802,NA12872,NA18502,NA18504,NA18517,NA18537,NA18552,NA18564,NA18572,NA18853,NA18860,NA18972,NA18975,NA19007,NA19132,NA19144,NA19173,NA19221,NA19240 nsv442143 7 125639433 125640566 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv438005 7 125640516 125643224 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv469160,nssv469162,nssv469147,nssv469115,nssv469153,nssv469140,nssv469090,nssv469133,nssv469118,nssv469117,nssv469159,nssv469126,nssv469142,nssv469110,nssv469128,nssv469109,nssv469092,nssv469112,nssv469131,nssv469122,nssv469144,nssv469116,nssv469088,nssv469134,nssv469094,nssv469123,nssv469129,nssv469145,nssv469121,nssv469111,nssv469139,nssv469089,nssv469104,nssv469161,nssv469084,nssv469157,nssv469155,nssv469091,nssv469102,nssv469149,nssv469151,nssv469132,nssv469156,nssv469093,nssv469100,nssv469148,nssv469150,nssv469106,nssv469120,nssv469095,nssv469137,nssv469114,nssv469146,nssv469113,nssv469105,nssv469087,nssv469099,nssv469125,nssv469085,nssv469127,nssv469136,nssv469154,nssv469138,nssv469098,nssv469096,nssv469158,nssv469103,nssv469124,nssv469135,nssv469107,nssv469101,nssv469143 M 269 0 72 Samples from several populations that are part of the HapMap project. "" NA10830,NA10835,NA10839,NA10846,NA10854,NA10860,NA11840,NA11992,NA12005,NA12145,NA12154,NA12248,NA18504,NA18506,NA18508,NA18521,NA18522,NA18523,NA18540,NA18542,NA18547,NA18552,NA18572,NA18579,NA18593,NA18608,NA18609,NA18611,NA18622,NA18635,NA18859,NA18860,NA18861,NA18863,NA18870,NA18913,NA18943,NA18951,NA18959,NA18971,NA18972,NA18976,NA18981,NA18987,NA18994,NA19007,NA19101,NA19103,NA19116,NA19127,NA19128,NA19129,NA19131,NA19138,NA19139,NA19140,NA19143,NA19145,NA19152,NA19154,NA19160,NA19192,NA19193,NA19194,NA19203,NA19204,NA19205,NA19206,NA19207,NA19208,NA19222,NA19238 nsv525318 7 125657382 125668382 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701427 S 2026 0 1 "" nsv521803 7 125743270 125813717 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694573 S 2026 1 0 "" nsv5938 7 125864272 125867674 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv683 S 9 1 0 "" NA19240 esv33698 7 125869284 125870134 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98274 S 51 0 1 "" 21772 nsv5939 7 125873306 125916729 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8421 S 9 0 1 "" NA12156 esv33690 7 125882724 125882952 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv95285,essv99599 M 51 0 2 "" 21872,22217 dgv2136e1 7 126088740 126271794 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv319,essv19408 M 271 0 0 "" NA11840 nsv8211 7 126107134 126127124 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18162,nssv17251,nssv19650,nssv14651,nssv17138,nssv18591,nssv17168,nssv16578,nssv16126,nssv16267,nssv15504 M 31 0 10 Samples from several populations that are part of the HapMap project. "" NA11830,NA12155,NA12872,NA18502,NA18552,NA18564,NA18860,NA18975,NA19221,NA19240 nsv5940 7 126129682 126174611 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8422 S 9 0 1 "" NA12156 nsv831121 7 126187314 126368364 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446458 S 95 1 0 "" nsv510114 7 126235136 126241136 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624049 S 4 0 1 "" NA18994 nsv5941 7 126305082 126339136 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2775 S 9 1 0 "" NA18555 nsv518034 7 126344273 126347701 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695443 S 2026 0 1 "" nsv437572 7 126366513 126375525 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467453 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19129 nsv8212 7 126369503 126375592 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18463,nssv18192 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18502,NA18504 nsv517633 7 126370170 126373907 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv652607,nssv661750,nssv679206,nssv698319,nssv687536,nssv663907,nssv686172 M 2026 0 7 "" nsv523812 7 126552579 126555484 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699642 S 2026 1 0 "" nsv526043 7 126579109 126592161 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702276 S 2026 0 1 "" nsv519554 7 126666091 126666211 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696917 S 2026 1 0 "" esv33524 7 126710917 126711141 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98812 S 51 0 1 "" 21606 esv33806 7 126722515 126725980 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98815 S 51 0 1 "" 21606 nsv831122 7 126737158 126951836 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446459 S 95 1 0 "" esv33152 7 126738611 126738653 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv95348 S 51 1 0 "" 21872 esv33857 7 126742800 126743009 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv92743,essv96131,essv96666,essv99986,essv94881,essv100418,essv96338 M 51 0 7 "" 21944,22007,22011,22086,22231,22300,22371 nsv518848 7 126752356 126758909 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696301 S 2026 0 1 "" nsv5942 7 126858964 126889497 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6168 S 9 1 0 "" NA12156 nsv831123 7 126883462 127104347 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446460 S 95 1 0 "" nsv510115 7 126921692 126927692 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618274 S 4 0 1 "" CHM nsv526535 7 127039545 127217791 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702848 S 2026 1 0 "" nsv526032 7 127201425 127210755 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702263 S 2026 0 1 "" nsv365757 7 127214106 127214423 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384335 M 24 "" nsv5944 7 127258911 127292795 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8423 S 9 1 0 "" NA12156 esv33413 7 127394015 127523254 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv94978 S 51 1 0 "" 22231 nsv5945 7 127445955 127474719 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8424 S 9 0 1 "" NA12156 nsv437031 7 127517729 127533412 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv466912 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA10856 nsv525319 7 127523222 127540124 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701428 S 2026 1 0 "" nsv831124 7 127564296 127741861 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446464,nssv1446463,nssv1446461,nssv1446465,nssv1446466 M 95 1 4 "" nsv365384 7 127591243 127594993 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv383962 M 24 "" nsv515737 7 127637986 127644368 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv677251,nssv664637,nssv682787,nssv670214,nssv682442 M 2026 0 5 "" nsv365688 7 127646441 127650059 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384266 M 24 "" nsv831125 7 128006656 128189702 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446468,nssv1446467,nssv1446469 M 95 0 3 "" nsv517923 7 128039217 128110896 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695334 S 2026 1 0 "" nsv464713 7 128039217 128115382 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540577 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00602 nsv818553 7 128052600 128101248 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415658 S 112 1 0 "" NA12248 nsv464715 7 128052600 128162911 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540578 S 1557 0 1 "" NINDS_111 nsv464717 7 128066932 128110896 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540580 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01215 nsv517371 7 128066932 128167918 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv674858,nssv667300,nssv663013,nssv685654,nssv688563,nssv682144,nssv668743,nssv666769,nssv671598,nssv690526,nssv669611,nssv651834,nssv704588,nssv692978,nssv679787,nssv663684,nssv672775,nssv701787,nssv705907 M 2026 2 17 "" nsv5946 7 128120920 128150026 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8425 S 9 0 1 "" NA12156 nsv507416 7 128283564 128289564 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621889,nssv617747,nssv620393 M 4 3 0 "" CHM,NA10860,NA15510 nsv5947 7 128298851 128343836 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8426 S 9 0 1 "" NA12156 nsv831127 7 128310207 128468642 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446470 S 95 1 0 "" nsv366371 7 128452941 128452992 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384949 M 24 "" nsv525482 7 128484763 128639142 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701610 S 2026 0 1 "" nsv516498 7 128495380 128665975 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv685674,nssv680178,nssv668689,nssv692923,nssv660854 M 2026 5 0 "" nsv831128 7 128656991 128834751 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446471 S 95 1 0 "" nsv5948 7 128902742 128913264 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8427 S 9 1 0 "" NA12156 nsv516024 7 128981331 129038902 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv683292,nssv676436,nssv675711,nssv698875,nssv679909,nssv689985,nssv702625,nssv660137,nssv671727,nssv674207,nssv696208,nssv665786 M 2026 1 11 "" nsv464721 7 128991595 129038902 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540581 S 1557 0 1 "" NINDS_98 nsv366278 7 129027426 129027426 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384856 M 24 "" esv33085 7 129032799 129040610 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100039 S 51 1 0 "" 22086 nsv518710 7 129044806 129044895 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694265 S 2026 0 1 "" nsv366414 7 129098363 129106823 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384992 M 24 "" nsv831129 7 129119357 129296428 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446472 S 95 0 1 "" nsv510968 7 129166853 129390535 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621601 S 4 0 0 "" NA15510 nsv5949 7 129194376 129227440 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5021 S 9 1 0 "" NA19129 nsv366394 7 129353657 129362688 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384972 M 24 "" nsv5950 7 129414014 129448321 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2776 S 9 1 0 "" NA18555 nsv508481 7 129428592 129505218 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622587 S 4 0 1 "" NA18994 nsv515945 7 129580912 129622040 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696708,nssv701779,nssv665400,nssv654679,nssv667301,nssv672644,nssv683293 M 2026 2 5 "" nsv831130 7 129652384 129744784 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446474 S 95 0 1 "" nsv831131 7 129702778 129798422 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446475 S 95 0 1 "" nsv510969 7 129723982 129771336 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622383,nssv621602,nssv618658,nssv624319 M 4 0 0 "" CHM,NA10860,NA15510,NA18994 nsv831132 7 129745642 129869408 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446483,nssv1446492,nssv1446491,nssv1446486,nssv1446498,nssv1446487,nssv1446493,nssv1446485,nssv1446494,nssv1446482,nssv1446497,nssv1446496,nssv1446481,nssv1446480,nssv1446478,nssv1446488,nssv1446476,nssv1446477,nssv1446489,nssv1446479,nssv1446490 M 95 9 12 "" nsv521979 7 130033701 130047046 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694746 S 2026 0 1 "" nsv507417 7 130126081 130132081 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617748,nssv621890 M 4 2 0 "" CHM,NA10860 nsv831133 7 130145565 130336488 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446499 S 95 0 1 "" dgv2137e1 7 130179011 130328113 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2505,essv4499,esv195 M 271 0 0 "" NA18552,NA19003 nsv366176 7 130207387 130211959 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384754 M 24 "" nsv523877 7 130444262 130446590 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699719 S 2026 0 1 "" nsv5951 7 130477734 130522637 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8428 S 9 0 1 "" NA12156 nsv831134 7 130597244 130756297 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446501,nssv1446500 M 95 2 0 "" nsv527070 7 130745917 130748049 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703449 S 2026 0 1 "" nsv7406 7 130892154 130935513 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv684 S 9 0 0 "" NA19240 nsv5952 7 130906584 130938170 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3579 S 9 1 0 "" NA12878 nsv522617 7 130916855 130929268 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv706013 S 2026 0 1 "" nsv5953 7 130947956 130992917 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8429 S 9 0 1 "" NA12156 nsv525004 7 131085956 131089563 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701038 S 2026 0 1 "" nsv464723 7 131089563 131162399 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540582 S 1557 0 1 "" 1798860372_A nsv519690 7 131136545 131171918 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696994 S 2026 0 1 "" nsv831135 7 131166329 131379118 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446504,nssv1446503,nssv1446502 M 95 0 3 "" nsv523063 7 131184770 131192401 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698749 S 2026 1 0 "" nsv517080 7 131233002 131237510 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv668144,nssv688671,nssv694044,nssv655459,nssv674940,nssv653754 M 2026 0 6 "" nsv442069 7 131235702 131237514 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv831136 7 131252256 131439080 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446505 S 95 0 1 "" nsv526514 7 131319965 131322347 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702824 S 2026 0 1 "" nsv464724 7 131322347 131336517 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540583 S 1557 0 1 "" 1798860306_A nsv522425 7 131336920 131338875 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705778 S 2026 1 0 "" nsv525647 7 131336920 131338875 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701801 S 2026 0 1 "" nsv831138 7 131374719 131525870 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446507 S 95 1 0 "" nsv831139 7 131566704 131737474 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446508 S 95 0 1 "" nsv831140 7 131697489 131800637 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446509 S 95 0 1 "" nsv526523 7 131701101 131711365 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702835 S 2026 0 1 "" nsv831141 7 131702292 131861777 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446510 S 95 0 1 "" nsv507418 7 131741921 131747921 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620394 S 4 1 0 "" NA15510 dgv2138e1 7 131778945 132001738 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv5325,esv61,essv2088 M 271 0 0 "" NA18563,NA18949 nsv831142 7 131967961 132072125 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446511 S 95 1 0 "" nsv507419 7 131978161 131984161 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621891,nssv617749,nssv620395 M 4 3 0 "" CHM,NA10860,NA15510 nsv525206 7 131990918 132025510 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701288 S 2026 0 1 "" nsv515919 7 132025510 132087301 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv665312,nssv681674 M 2026 2 0 "" nsv7407 7 132042520 132082541 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3580 S 9 0 0 "" NA12878 nsv528226 7 132362324 132364906 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704788 S 2026 0 1 "" nsv507420 7 132362468 132368468 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623017,nssv621892 M 4 2 0 "" NA10860,NA18994 nsv5955 7 132454171 132465790 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8430 S 9 0 1 "" NA12156 nsv5956 7 132474716 132507428 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1684 S 9 1 0 "" NA18555 nsv464725 7 132560303 132682664 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540584 S 1557 0 1 "" NINDS_229 dgv237n6 7 132564928 132565277 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv366188,nsv366398 M 24 "" nsv528972 7 132658072 132718080 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705671 S 2026 0 1 "" nsv831143 7 132752166 132919188 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446512 S 95 1 0 "" nsv525065 7 132779952 132802781 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701117 S 2026 0 1 "" nsv366574 7 132999120 132999374 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv385152 M 24 "" nsv831144 7 133001258 133174930 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446513 S 95 0 1 "" dgv2139e1 7 133094440 133281052 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv850,essv8881,essv8480,essv21857,essv20582,essv4399,essv16986,essv574,essv5582,essv12235,essv10571,essv9991,essv10118,essv7536,essv12842,essv13618,essv15070,essv15781,essv12308,essv12532,essv14539,essv3021,essv15628,essv15839,essv11219,essv11532,esv325,essv20893,essv9073,essv13937,essv23089,essv16680,essv15351,essv8088,essv14794,essv22815,essv15228,essv486,essv16041,essv17577,essv24840,essv1090,essv19445,essv10281 M 271 0 0 "" NA07000,NA07056,NA11839,NA11840,NA12004,NA12762,NA12801,NA12812,NA18501,NA18506,NA18508,NA18516,NA18529,NA18545,NA18573,NA18854,NA18862,NA18912,NA18952,NA18964,NA18981,NA18998,NA19000,NA19094,NA19098,NA19099,NA19101,NA19120,NA19127,NA19129,NA19130,NA19131,NA19132,NA19138,NA19142,NA19144,NA19159,NA19173,NA19202,NA19204,NA19206,NA19223,NA19240 nsv521054 7 133197519 133308118 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697758 S 2026 0 1 "" dgv135n17 7 133231057 133260061 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437575,nsv437574,nsv437573 M 60 0 3 "" NA19139,NA19161,NA19211 nsv5957 7 133232258 133274380 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6169 S 9 0 1 "" NA12156 esv32753 7 133240442 133260637 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98723,essv98811,essv97468,essv93951,essv100725,essv96871,essv100923,essv94648,essv93979,essv95467,essv93074,essv95322,essv101662,essv94616,essv98962,essv96237,essv96609,essv98530,essv99873,essv96045,essv93511,essv99616,essv94908,essv98063,essv96472,essv99153,essv97630,essv100239,essv96335,essv94286 M 51 0 29 "" 21606,21616,21634,21656,21659,21693,21791,21802,21847,21863,21872,21909,21932,21938,22007,22011,22085,22086,22127,22128,22217,22231,22259,22261,22275,22278,22286,22371,22394 nsv8215 7 133240782 133260933 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18222,nssv16859,nssv16010,nssv19680,nssv16297,nssv16443,nssv16473,nssv17281,nssv15836,nssv19184,nssv14929,nssv16327,nssv16889,nssv18893,nssv16648,nssv15534,nssv16678,nssv15812,nssv15292,nssv15866,nssv16638,nssv19154,nssv18621,nssv15797,nssv16608,nssv16275,nssv15842,nssv15335,nssv17311,nssv16075,nssv16156,nssv15130,nssv18417 M 31 24 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10847,NA11830,NA12802,NA18502,NA18517,NA18537,NA18552,NA18563,NA18564,NA18572,NA18853,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19144,NA19173,NA19221,NA19240 nsv442150 7 133242450 133256409 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv438006 7 133243154 133253519 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv469195,nssv469175,nssv469178,nssv469203,nssv469196,nssv469189,nssv469192,nssv469171,nssv469180,nssv469167,nssv469188,nssv469172,nssv469201,nssv469191,nssv469199,nssv469184,nssv469182,nssv469193,nssv469181,nssv469168,nssv469176,nssv469194,nssv469166,nssv469187,nssv469200,nssv469165,nssv469164,nssv469173,nssv469190,nssv469198,nssv469169,nssv469177,nssv469183,nssv469179,nssv469202,nssv469170 M 269 0 36 Samples from several populations that are part of the HapMap project. "" NA07055,NA07348,NA07357,NA10831,NA10839,NA10851,NA10863,NA11831,NA11995,NA12006,NA12155,NA12234,NA12248,NA12264,NA12707,NA12717,NA12740,NA12763,NA12814,NA12864,NA12872,NA18504,NA18540,NA18593,NA18594,NA18624,NA18940,NA18961,NA18966,NA19119,NA19137,NA19139,NA19160,NA19161,NA19209,NA19211 nsv508483 7 133249418 133281069 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618821 S 4 0 1 "" NA10860 nsv507421 7 133288374 133294374 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623018,nssv617750,nssv621893,nssv620396 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv831145 7 133357500 133529727 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446514 S 95 1 0 "" dgv2140e1 7 133517421 133525343 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1189,essv7477 M 271 0 0 "" NA18633 dgv430n21 7 133672658 133711284 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv520274,nsv525734 M 2026 0 2 "" nsv5958 7 133764962 133798812 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8431 S 9 1 0 "" NA12156 nsv818554 7 133771659 133782666 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417267 S 112 0 1 "" NA18593 nsv366336 7 133807255 133807677 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384914 M 24 "" nsv464726 7 133845510 133860996 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540585 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00968 nsv5959 7 133959200 133981949 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3581 S 9 1 0 "" NA12878 nsv521781 7 134019074 134019999 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694549 S 2026 0 1 "" nsv365920 7 134062263 134062351 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384498 M 24 "" nsv516148 7 134087897 134089173 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv666487,nssv687732 M 2026 0 2 "" nsv527174 7 134094797 134299190 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703569 S 2026 0 1 "" nsv523222 7 134222403 134253241 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698944 S 2026 1 0 "" nsv527014 7 134291125 134348914 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703389 S 2026 1 0 "" nsv523974 7 134400192 134402505 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699827 S 2026 0 1 "" nsv523110 7 134409710 134410264 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698807 S 2026 0 1 "" nsv527175 7 134452371 134491633 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703570 S 2026 1 0 "" nsv5960 7 134470406 134494487 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8432 S 9 0 1 "" NA12156 nsv464729 7 134474290 134495643 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540587 S 1557 0 1 "" NINDS_98 nsv520786 7 134510023 134729525 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697608 S 2026 1 0 "" nsv831146 7 134640000 134799096 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446515 S 95 0 1 "" nsv5961 7 134651074 134684630 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv685 S 9 1 0 "" NA19240 nsv528795 7 134821626 134821781 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705466 S 2026 0 1 "" nsv515753 7 135261306 135261498 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv691340,nssv655618,nssv668481,nssv664679 M 2026 0 4 "" nsv524143 7 135354181 135361759 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700021 S 2026 0 1 "" nsv510116 7 135360857 135366857 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624050 S 4 0 1 "" NA18994 esv33093 7 135517013 135517603 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100627 S 51 1 0 "" 21656 nsv518439 7 135591520 135909337 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695875 S 2026 1 0 "" nsv366397 7 135632369 135632369 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384975 M 24 "" nsv507422 7 135637653 135643653 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617751,nssv621894,nssv623019,nssv620397 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv510117 7 135756264 135762264 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622146,nssv621324,nssv618275,nssv624051 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv508484 7 135790504 135842045 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618822 S 4 0 1 "" NA10860 nsv366717 7 135967950 135967950 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv385295 M 24 "" nsv831147 7 136040699 136212996 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446516 S 95 1 0 "" nsv528311 7 136107862 136138056 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704889 S 2026 0 1 "" nsv527148 7 136143126 136144658 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703538 S 2026 1 0 "" nsv5962 7 136257330 136282803 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3582 S 9 1 0 "" NA12878 nsv464730 7 136282777 136340180 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540588 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01238 nsv831149 7 136288920 136463723 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446519 S 95 1 0 "" nsv517954 7 136338008 136340180 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695365 S 2026 0 1 "" esv33947 7 136377268 137425104 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv95092,essv96920 M 51 2 0 "" 21721,21817 nsv524262 7 136445827 136447976 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700159 S 2026 0 1 "" nsv518230 7 136546792 136547724 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695660 S 2026 0 1 "" nsv520950 7 136611827 136625239 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv686075,nssv678308 M 2026 0 2 "" nsv366883 7 136665827 136666171 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv385461 M 24 "" nsv464731 7 136813906 136862036 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540589 S 1557 0 1 "" 1780862299_A dgv238n6 7 136912527 136912846 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv366151,nsv366233 M 24 "" nsv831150 7 136957814 137110063 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446521,nssv1446520 M 95 1 1 "" nsv518070 7 136991882 137266094 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695484 S 2026 1 0 "" nsv5963 7 137019443 137053306 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8434 S 9 1 0 "" NA12156 nsv5964 7 137056706 137073555 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8435 S 9 0 1 "" NA12156 nsv831151 7 137168702 137322726 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446522,nssv1446523 M 95 1 1 "" nsv437032 7 137210346 137230546 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv466913 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA10857 nsv523950 7 137212398 137214297 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699798 S 2026 0 1 "" nsv524321 7 137303856 137304853 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700225 S 2026 0 1 "" nsv831152 7 137341566 137490372 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446524 S 95 1 0 "" nsv527643 7 137386562 137411674 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704114 S 2026 0 1 "" nsv517949 7 137419441 137450224 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695361 S 2026 1 0 "" nsv5967 7 137445494 137473099 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1687 S 9 0 1 "" NA18555 nsv831153 7 137535434 137722903 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446525 S 95 0 1 "" nsv5968 7 137721315 137756193 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3583 S 9 1 0 "" NA12878 nsv365934 7 137779459 137779522 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384512 M 24 "" nsv818557 7 137821151 137828937 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417439 S 112 1 0 "" NA18952 nsv366522 7 137839293 137841305 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv385100 M 24 "" nsv527116 7 137843844 137845034 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703498 S 2026 0 1 "" nsv831154 7 137927743 138131368 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446526 S 95 1 0 "" nsv366558 7 137931841 137931841 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv385136 M 24 "" nsv516706 7 137943791 137951843 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv670297,nssv655196,nssv681675,nssv656417 M 2026 0 4 "" nsv5969 7 138062933 138108007 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8436 S 9 0 1 "" NA12156 nsv831155 7 138095648 138286187 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446528,nssv1446527,nssv1446530 M 95 0 3 "" dgv2141e1 7 138190952 138384594 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv9446,esv460 M 271 0 0 "" NA19208 nsv517806 7 138251873 138259416 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695210 S 2026 0 1 "" nsv526825 7 138584338 138625871 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703181 S 2026 0 1 "" nsv526644 7 138620718 138625871 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702970 S 2026 0 1 "" nsv464732 7 138877217 139107440 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540590 S 1557 1 0 "" 1780854338_A nsv464733 7 138945151 138992402 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540591 S 1557 0 1 "" 1780854063_A nsv831156 7 138985502 139147510 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446531 S 95 0 1 "" nsv365428 7 139103739 139103882 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384006 M 24 "" nsv5970 7 139411086 139444229 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8437 S 9 1 0 "" NA12156 nsv520097 7 139422235 139433027 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv678704,nssv663634,nssv689818,nssv660724,nssv671334 M 2026 0 5 "" nsv519667 7 139422235 139445571 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696982 S 2026 0 1 "" nsv442070 7 139457227 139461650 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv517812 7 139462516 139463292 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695217 S 2026 1 0 "" nsv522190 7 139519595 139583847 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694965 S 2026 1 0 "" nsv5971 7 139580513 139611871 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv11162 S 9 1 0 "" NA15510 nsv437576 7 139636169 139670854 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467457 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19142 nsv442071 7 139646045 139652196 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv8216 7 139646220 139658313 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16919,nssv16708 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA19144,NA19173 nsv517608 7 139648647 139654637 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv662221,nssv656418,nssv652493 M 2026 0 3 "" nsv464735 7 139648647 139686769 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540592 S 1557 1 0 "" 1780862084_A nsv831157 7 139694523 139880060 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446532 S 95 1 0 "" nsv366001 7 139736271 139737203 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384579 M 24 "" nsv831158 7 139845406 140055499 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446533 S 95 0 1 "" nsv518139 7 139965845 140075539 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695559 S 2026 0 1 "" nsv520944 7 140126963 140132868 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv691814,nssv678131 M 2026 0 2 "" nsv831160 7 140462195 140641230 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446534 S 95 0 1 "" nsv507423 7 140476216 140482216 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623021,nssv617752 M 4 2 0 "" CHM,NA18994 nsv437577 7 140534936 140549231 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467458 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18857 nsv519080 7 140538698 140541729 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696551 S 2026 0 1 "" nsv366438 7 140567065 140567383 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv385016 M 24 "" nsv527529 7 140621187 140624544 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703987 S 2026 0 1 "" nsv5972 7 140646032 140660591 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv686 S 9 1 0 "" NA19240 nsv510118 7 140792402 140798402 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622147 S 4 0 1 "" NA10860 nsv5973 7 140841467 140858513 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv687 S 9 1 0 "" NA19240 nsv831161 7 141000038 141163390 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446535 S 95 0 1 "" nsv5974 7 141055503 141096181 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv688 S 9 0 1 "" NA19240 nsv366541 7 141073660 141079706 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv385119 M 24 "" nsv524927 7 141125788 141139367 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700940 S 2026 1 0 "" dgv831n27 7 141139367 141142850 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv464736,nsv464737,nsv464738 M 1557 0 3 "" HGDP00998,HGDP01013,HGDP01019 dgv2142e1 7 141163595 141382145 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv20278,essv21011,essv20442,essv18633,essv5404,essv24742,essv19410,esv318,essv23939,essv22082,essv2516,essv18157,essv23548,essv19575,essv21527,essv278,essv2073,essv1178,essv20601,essv18307 M 271 0 0 "" NA06991,NA06993,NA07056,NA10830,NA10846,NA11829,NA11840,NA11993,NA12144,NA12154,NA12234,NA12814,NA12864,NA12873,NA18563,NA18949,NA18951,NA18978,NA19003 nsv515542 7 141181806 141182931 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv666307,nssv663864 M 2026 0 2 "" nsv8217 7 141193249 141199810 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16506,nssv17109,nssv15827 M 31 0 3 Samples from several populations that are part of the HapMap project. "" NA10863,NA12740,NA18563 nsv464740 7 141193261 141241903 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540597 S 1557 0 1 "" NINDS_22 nsv525756 7 141208379 141217050 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701924 S 2026 0 1 "" nsv464741 7 141208379 141241903 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540598 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00326 dgv832n27 7 141210775 141236153 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv464792,nsv464747,nsv464795,nsv464748,nsv464793,nsv464742 M 1557 6 0 "" 1782681114_A,HGDP00896,HGDP00976,HGDP01373,NINDS_20,NINDS_268 nsv8218 7 141211888 141251519 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17139,nssv16536,nssv16949,nssv15160,nssv14959,nssv16186,nssv15857,nssv18923,nssv16668 M 31 4 5 Samples from several populations that are part of the HapMap project. "" NA10863,NA12740,NA12802,NA18552,NA18563,NA18564,NA18572,NA18972,NA19173 dgv833n27 7 141213178 141241903 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv464782,nsv464781,nsv464744,nsv464844,nsv464776,nsv464743,nsv464803,nsv464784,nsv464808,nsv464846,nsv464815 M 1557 11 0 "" 1780862080_A,1780862165_A,1780862207_A,1780862227_A,1780862521_A,1782681115_A,1782681274_A,NINDS_27,NINDS_46,NINDS_53,NINDS_83 dgv834n27 7 141213982 141236153 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv464745,nsv464746,nsv464811,nsv464812,nsv464813,nsv464749 M 1557 0 6 "" 1798860010_A,HGDP00530,HGDP00600,HGDP00674,HGDP00758,HGDP00949 nsv818558 7 141213982 141236153 CNV Gain+Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415849,nssv1415848,nssv1415659,nssv1415660 M 112 3 1 "" NA10835,NA11992,NA11993,NA12248 nsv433393 7 141213982 141240511 CNV Gain Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463274 S 9 1 0 Samples from several populations that are part of the HapMap project. "" NA12156 dgv835n27 7 141213982 141241903 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv464804,nsv464843,nsv464820,nsv464798,nsv464834,nsv464765,nsv464836,nsv464760,nsv464800,nsv464799,nsv464840,nsv464785,nsv464751,nsv464766,nsv464824,nsv464773,nsv464823,nsv464841,nsv464764,nsv464775,nsv464757,nsv464754,nsv464817,nsv464777,nsv464758,nsv464767,nsv464806,nsv464830,nsv464797,nsv464832,nsv464802,nsv464849,nsv464833,nsv464829,nsv464796,nsv464819,nsv464769,nsv464842,nsv464847,nsv464756,nsv464780,nsv464762,nsv464801,nsv464821,nsv464831,nsv464770,nsv464779,nsv464786,nsv464822,nsv464807,nsv464825,nsv464837,nsv464771,nsv464818,nsv464828,nsv464753,nsv464835,nsv464826,nsv464814,nsv464763,nsv464778,nsv464752,nsv464755,nsv464845,nsv464759,nsv464774,nsv464768,nsv464848 M 1557 0 68 "" 1780854326_A,1780854455_A,1780854463_A,1780854496_A,1780862066_A,1780862125_A,1780862175_A,1780862360_A,1780862408_A,1780862487_A,1782681076_A,1782681079_A,1782681091_A,1782681217_A,1798860587_A,HGDP00092,HGDP00110,HGDP00151,HGDP00285,HGDP00315,HGDP00319,HGDP00392,HGDP00397,HGDP00521,HGDP00576,HGDP00580,HGDP00630,HGDP00647,HGDP00648,HGDP00649,HGDP00667,HGDP00692,HGDP00736,HGDP00738,HGDP00782,HGDP00797,HGDP00821,HGDP00881,HGDP00889,HGDP00893,HGDP00903,HGDP00969,HGDP01058,HGDP01065,HGDP01066,HGDP01067,HGDP01098,HGDP01163,HGDP01224,HGDP01232,HGDP01241,HGDP01340,HGDP01346,NINDS_104,NINDS_116,NINDS_129,NINDS_136,NINDS_152,NINDS_198,NINDS_231,NINDS_239,NINDS_38,NINDS_40,NINDS_5,NINDS_60,NINDS_67,NINDS_9,NINDS_92 nsv464790 7 141213982 141247974 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540647 S 1557 1 0 "" 1780862002_A dgv836n27 7 141213982 141254191 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv464809,nsv464851,nsv464788,nsv464789,nsv464787,nsv464810,nsv464791 M 1557 0 7 "" HGDP00102,HGDP00402,HGDP00598,HGDP00885,NINDS_225,NINDS_256,NINDS_86 nsv516285 7 141213982 141254191 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv668115,nssv690963,nssv661662,nssv691704,nssv670842,nssv687807,nssv677205,nssv661582,nssv668417,nssv684605,nssv692824,nssv659458,nssv692620,nssv689846,nssv688647,nssv688729,nssv659181,nssv681676,nssv661160,nssv689724,nssv657358,nssv663787,nssv687709,nssv690376,nssv678779,nssv652438,nssv652719,nssv682121,nssv657191,nssv655923,nssv660420,nssv668963,nssv655049,nssv669414,nssv652260,nssv664095,nssv681706,nssv669719,nssv656681,nssv678830,nssv666466,nssv656314,nssv679834,nssv661574,nssv660574,nssv682631,nssv688410,nssv662973,nssv655872,nssv653443,nssv691782,nssv670180,nssv684959,nssv667998,nssv662580,nssv684514,nssv663111,nssv680381,nssv656502,nssv662741,nssv662394,nssv690008,nssv686301,nssv661374,nssv682072,nssv683351,nssv672878,nssv677462,nssv683698,nssv671599,nssv693444,nssv656450,nssv691827,nssv674665,nssv656928,nssv653169,nssv692996,nssv669127,nssv657695,nssv659999,nssv655534,nssv685525,nssv674501,nssv667669,nssv673884,nssv675075,nssv664399,nssv684111,nssv655271,nssv676063,nssv655656,nssv687234,nssv662367,nssv693865,nssv671181,nssv680846,nssv672091,nssv658795,nssv660067,nssv687139,nssv667970,nssv659932,nssv690839,nssv684876,nssv671757,nssv688564,nssv659828,nssv675975,nssv670033,nssv687785,nssv655135,nssv683231,nssv691074,nssv683422,nssv664515,nssv687828,nssv652953,nssv657121,nssv676362,nssv681946,nssv661663,nssv692524,nssv669102,nssv652373,nssv674840,nssv679628,nssv670407,nssv652732,nssv682995,nssv665811,nssv672477,nssv667510,nssv688692,nssv683815,nssv655892,nssv693199,nssv690728,nssv655250,nssv682443,nssv674707,nssv681450,nssv693795,nssv692366,nssv675860,nssv660189,nssv701070,nssv705605,nssv664569,nssv677388,nssv692437,nssv669024,nssv680234,nssv680845,nssv652543,nssv682088,nssv684326,nssv678132,nssv652749,nssv652829,nssv682948,nssv663161,nssv663765,nssv653894,nssv676526,nssv678309,nssv669077,nssv666224,nssv677971,nssv690226,nssv668862,nssv674648,nssv661616,nssv673011,nssv690973,nssv678374,nssv661337,nssv674961,nssv669841,nssv691543,nssv665739,nssv688597,nssv672061,nssv679682,nssv653010,nssv655489,nssv663160,nssv668622,nssv662850,nssv660873,nssv660966,nssv676306,nssv685150,nssv651733,nssv655341,nssv674859,nssv665085,nssv685524,nssv652085,nssv688076,nssv660981,nssv694788,nssv669349,nssv686458,nssv669663,nssv688314,nssv673519,nssv652810,nssv659884,nssv703105,nssv679307,nssv656175,nssv688979,nssv651874,nssv679551,nssv678424,nssv667099,nssv683831,nssv669140,nssv672776,nssv690332,nssv658516,nssv678408,nssv657925,nssv667454,nssv679932,nssv686031,nssv652971,nssv657554,nssv664417,nssv662646,nssv675121,nssv666308,nssv676721,nssv667865,nssv672290,nssv677204,nssv677630,nssv654552,nssv665718,nssv693479,nssv668393,nssv676395,nssv670865,nssv685078,nssv655619,nssv690504,nssv683151,nssv690873,nssv690317,nssv679910,nssv695135,nssv669442,nssv691591,nssv677227,nssv688365,nssv670638,nssv675271,nssv653319,nssv670828,nssv656419,nssv663452,nssv652410,nssv685953,nssv681107,nssv666036,nssv693271,nssv677074,nssv654063,nssv690580,nssv693343,nssv653513,nssv688194,nssv652639,nssv664837,nssv683499,nssv655488,nssv653249,nssv654349,nssv679011,nssv676788,nssv678338,nssv669857,nssv687844,nssv678358,nssv677905,nssv665107,nssv680132,nssv669913,nssv670262,nssv689904,nssv689806,nssv671819,nssv685406,nssv686092,nssv683488,nssv654393,nssv665527,nssv652699,nssv693731,nssv673912,nssv651851,nssv689385,nssv682034,nssv694437,nssv675531,nssv681490,nssv670988,nssv686729,nssv685919,nssv657906,nssv651918,nssv686041,nssv688849,nssv663434,nssv689635,nssv668235,nssv660529,nssv674286,nssv665026,nssv683515,nssv659136,nssv676913,nssv674224,nssv689158,nssv668650,nssv678606,nssv692414,nssv679988,nssv668319,nssv670275,nssv656268,nssv675822,nssv663659,nssv691953,nssv660203,nssv653197,nssv678339,nssv681514,nssv691464,nssv661192,nssv671335,nssv692075,nssv677397,nssv657357,nssv689494,nssv666292,nssv673261,nssv663034,nssv654270,nssv689252,nssv703142,nssv688432,nssv672148,nssv691465,nssv662237,nssv664209,nssv668145,nssv661240,nssv701948,nssv686922,nssv673935 M 2026 20 341 "" esv33962 7 141214757 141520912 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101539,essv98747,essv98888,essv101223,essv101227,essv100654,essv100809,essv96842,essv96834,essv100935,essv95096,essv95054,essv98338,essv98195,essv94719,essv94122,essv94112,essv101408,essv101303,essv94367,essv94340,essv96948,essv96922,essv97911,essv95574,essv95456,essv93043,essv95295,essv101654,essv101716,essv95799,essv95792,essv94626,essv94628,essv94589,essv98955,essv99131,essv92914,essv92672,essv93657,essv96140,essv96744,essv96691,essv97233,essv97106,essv98637,essv99750,essv99931,essv99885,essv93461,essv93546,essv93369,essv99602,essv99715,essv94885,essv94989,essv95006,essv92643,essv92647,essv99242,essv97623,essv100401,essv100350,essv98380,essv96328,essv96305,essv96417,essv94207 M 51 15 38 "" 21603,21606,21618,21656,21659,21693,21721,21772,21791,21802,21805,21808,21817,21837,21841,21847,21863,21872,21909,21911,21932,21938,21939,21944,21972,22007,22011,22075,22085,22086,22128,22170,22217,22231,22233,22275,22278,22300,22352,22371,22394 nsv5975 7 141216321 141224084 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6170 S 9 1 0 "" NA12156 nsv818559 7 141217050 141241903 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416168,nssv1416169,nssv1415965,nssv1415966 M 112 0 4 "" NA12740,NA12750,NA12878,NA12892 nsv433239 7 141218889 141246603 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463120 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA12878 nsv442187 7 141222827 141245092 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv837n27 7 141225812 141241903 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv464855,nsv464967,nsv464913,nsv465100,nsv465007,nsv464999,nsv464964,nsv464876,nsv465054,nsv464881,nsv464937,nsv465012,nsv464968,nsv464863,nsv464997,nsv464955,nsv464945,nsv465077,nsv464914,nsv464940,nsv464953,nsv464981,nsv465013,nsv464852,nsv464963,nsv464936,nsv464920,nsv464957,nsv465086,nsv464941,nsv465143,nsv464882,nsv465069,nsv465017,nsv464977,nsv464911,nsv464864,nsv465142,nsv464928,nsv464944,nsv465006,nsv465050,nsv465032,nsv464869,nsv464925,nsv464962,nsv465052,nsv465009,nsv464918,nsv465101,nsv464965,nsv464993,nsv465083,nsv464879,nsv465014,nsv465094,nsv464897,nsv464996,nsv464987,nsv464948,nsv465043,nsv464875,nsv465003,nsv464908,nsv465046,nsv465011,nsv465090,nsv465085,nsv465045,nsv464860,nsv464930,nsv465064,nsv464954,nsv465088,nsv465140,nsv464862,nsv465001,nsv465051,nsv465082,nsv464871,nsv464985,nsv465039,nsv464929,nsv464907,nsv464912,nsv465036,nsv464909,nsv464986,nsv464947,nsv464921,nsv464867,nsv464873,nsv465004,nsv465078,nsv465092,nsv465010,nsv465133,nsv464959,nsv465075,nsv465030,nsv465091,nsv465081,nsv464989,nsv464896,nsv465020,nsv464952,nsv465040,nsv465063,nsv464984,nsv465076,nsv464870,nsv464943,nsv464865,nsv465022,nsv464893,nsv465019,nsv464991,nsv464898,nsv464933,nsv464969,nsv464958,nsv464884,nsv464926,nsv465037,nsv465141,nsv465035,nsv464857,nsv464922,nsv465033,nsv465057,nsv465044,nsv465056,nsv464939,nsv464946,nsv465029,nsv464910,nsv465028,nsv465089,nsv465055,nsv464951,nsv464995,nsv464853,nsv464889,nsv464971,nsv465041,nsv465087,nsv464856,nsv464888,nsv464915,nsv465136,nsv464906,nsv465021,nsv465058,nsv465065,nsv464931,nsv464942,nsv464886,nsv464975,nsv465048,nsv464923,nsv465066,nsv465068,nsv464982,nsv465138,nsv464980,nsv464868,nsv465008,nsv464998,nsv464988,nsv465135,nsv465026,nsv464895,nsv465025,nsv465000,nsv464990,nsv464992,nsv465031,nsv465097,nsv464891,nsv465024,nsv465080,nsv464970,nsv465059,nsv465144,nsv464899,nsv464880,nsv464874,nsv464890,nsv465067,nsv465093,nsv464932,nsv465002,nsv464956,nsv465072,nsv464877,nsv465023,nsv465034,nsv464900,nsv465071,nsv464973,nsv464976,nsv465096,nsv464974,nsv465099,nsv465042,nsv464903,nsv465137,nsv464919,nsv464854,nsv465018,nsv464904,nsv464979,nsv465132,nsv464966,nsv465079,nsv464917,nsv464934,nsv464858,nsv464935,nsv464902,nsv464885,nsv464866,nsv464960,nsv464978,nsv465015,nsv464901,nsv464887,nsv464878,nsv465053,nsv465074,nsv464892,nsv464924,nsv465098,nsv465070,nsv465134,nsv464859,nsv465047 M 1557 0 237 "" 1780846004_A,1780854017_A,1780854065_A,1780854101_A,1780854159_A,1780854176_A,1780854184_A,1780854206_A,1780854235_A,1780854257_A,1780854279_A,1780854294_A,1780854299_A,1780854313_A,1780854325_A,1780854327_A,1780854328_A,1780854334_A,1780854336_A,1780854362_A,1780854391_A,1780854401_A,1780854441_A,1780854459_A,1780854481_A,1780854484_A,1780854485_A,1780854522_A,1780854532_A,1780854545_A,1780854573_A,1780862019_A,1780862067_A,1780862076_A,1780862078_A,1780862095_A,1780862123_A,1780862127_A,1780862156_A,1780862162_A,1780862195_A,1780862206_A,1780862246_A,1780862252_A,1780862347_A,1780862355_A,1780862366_A,1780862378_A,1780862386_A,1780862390_A,1780862394_A,1780862399_A,1780862403_A,1780862414_A,1780862452_A,1780862461_A,1780862466_A,1780862520_A,1780862539_A,1780862540_A,1780862577_A,1780862592_A,1780862597_A,1782681087_A,1782681096_A,1782681110_A,1782681116_A,1782681208_A,1782681236_A,1782681263_A,1782681278_A,1782681287_A,1782681294_A,1782681317_A,1782681495_A,1787431198_A,1788485381_A,1798860047_A,1798860166_A,1798860251_A,1798860292_A,1798860552_A,1798860565_A,1798860569_A,HGDP00001,HGDP00007,HGDP00021,HGDP00025,HGDP00037,HGDP00045,HGDP00049,HGDP00058,HGDP00066,HGDP00070,HGDP00082,HGDP00086,HGDP00094,HGDP00096,HGDP00098,HGDP00103,HGDP00127,HGDP00135,HGDP00136,HGDP00155,HGDP00157,HGDP00160,HGDP00189,HGDP00208,HGDP00224,HGDP00258,HGDP00274,HGDP00279,HGDP00288,HGDP00309,HGDP00364,HGDP00376,HGDP00428,HGDP00511,HGDP00512,HGDP00522,HGDP00524,HGDP00531,HGDP00534,HGDP00535,HGDP00537,HGDP00587,HGDP00606,HGDP00612,HGDP00622,HGDP00645,HGDP00666,HGDP00668,HGDP00669,HGDP00677,HGDP00680,HGDP00700,HGDP00715,HGDP00722,HGDP00769,HGDP00775,HGDP00780,HGDP00783,HGDP00813,HGDP00817,HGDP00856,HGDP00879,HGDP00883,HGDP00884,HGDP00886,HGDP00894,HGDP00900,HGDP00901,HGDP00902,HGDP00958,HGDP00966,HGDP01023,HGDP01041,HGDP01044,HGDP01050,HGDP01053,HGDP01059,HGDP01072,HGDP01076,HGDP01078,HGDP01102,HGDP01153,HGDP01166,HGDP01168,HGDP01172,HGDP01181,HGDP01182,HGDP01183,HGDP01195,HGDP01204,HGDP01206,HGDP01227,HGDP01228,HGDP01234,HGDP01239,HGDP01248,HGDP01262,HGDP01263,HGDP01282,HGDP01288,HGDP01289,HGDP01293,HGDP01302,HGDP01310,HGDP01317,HGDP01322,HGDP01323,HGDP01329,HGDP01332,HGDP01336,HGDP01339,HGDP01351,HGDP01361,HGDP01362,HGDP01365,HGDP01366,HGDP01367,HGDP01371,HGDP01379,HGDP01386,HGDP01388,NINDS_112,NINDS_115,NINDS_117,NINDS_119,NINDS_124,NINDS_127,NINDS_130,NINDS_132,NINDS_14,NINDS_146,NINDS_155,NINDS_179,NINDS_19,NINDS_191,NINDS_204,NINDS_220,NINDS_221,NINDS_226,NINDS_242,NINDS_259,NINDS_260,NINDS_3,NINDS_42,NINDS_43,NINDS_48,NINDS_59,NINDS_62,NINDS_76,NINDS_80,NINDS_96,NINDS_97,NINDS_99 nsv818560 7 141225812 141241903 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416828,nssv1416839,nssv1417672,nssv1417360,nssv1415583,nssv1417692,nssv1416071,nssv1417410,nssv1416073,nssv1415582,nssv1417859,nssv1417744,nssv1417226,nssv1417474,nssv1417613,nssv1417848,nssv1417660 M 112 0 17 "" NA06991,NA06993,NA10830,NA10857,NA10863,NA12043,NA12154,NA12234,NA12801,NA12812,NA18576,NA18612,NA18951,NA18960,NA18978,NA18999,NA19003 nsv438007 7 141225812 141246603 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv469209,nssv469207,nssv469212,nssv469204,nssv469205,nssv469210,nssv469206,nssv469211 M 269 0 4 Samples from several populations that are part of the HapMap project. "" NA06993,NA07019,NA07056,NA10846 nsv465105 7 141225812 141247974 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540961 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00541 dgv838n27 7 141225812 141254191 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv465121,nsv465114,nsv465111,nsv465116,nsv465108,nsv465107,nsv465110,nsv465129,nsv465124,nsv465118,nsv465146,nsv465112,nsv465102,nsv465127,nsv465109,nsv465103,nsv465113,nsv465122,nsv465104,nsv465130,nsv465145,nsv465125,nsv465120,nsv465115,nsv465147,nsv465119,nsv465126,nsv465123 M 1557 0 28 "" 1780854118_A,1780854260_A,1780854446_A,1780854558_A,1780862040_A,1780862043_A,1780862456_A,1782681247_A,HGDP00060,HGDP00109,HGDP00307,HGDP00519,HGDP00627,HGDP00640,HGDP00747,HGDP00778,HGDP00785,HGDP00799,HGDP00808,HGDP00895,HGDP01101,HGDP01180,HGDP01255,HGDP01266,HGDP01355,NINDS_209,NINDS_210,NINDS_214 nsv465131 7 141225812 141824539 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv540987 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01205 nsv5976 7 141231410 141244765 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6171 S 9 1 0 "" NA12156 nsv831162 7 141429528 141610636 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446536 S 95 1 0 "" nsv465148 7 141468012 141999847 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541004 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00703 nsv5978 7 141484873 141502403 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3584 S 9 1 0 "" NA12878 nsv5979 7 141488721 141557369 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3585,nssv9728,nssv5022,nssv6172,nssv689,nssv10582,nssv11163,nssv9448,nssv1688 M 9 0 9 "" NA12156,NA12878,NA15510,NA18507,NA18517,NA18555,NA18956,NA19129,NA19240 nsv8219 7 141494721 141528660 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15220,nssv19274,nssv19214,nssv15352,nssv16503,nssv15947,nssv18553,nssv16335,nssv15887,nssv18493,nssv17199,nssv17169,nssv16216,nssv16563,nssv16276,nssv18477,nssv15322,nssv18681,nssv14989,nssv16566,nssv15872,nssv15382,nssv15250,nssv16365,nssv14681,nssv16533,nssv15917,nssv19244,nssv16246,nssv16828,nssv17341,nssv16738,nssv17371,nssv17198,nssv15190,nssv14711,nssv17401,nssv16305,nssv18523,nssv19710,nssv18507,nssv16798,nssv18651 M 31 6 13 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10863,NA12155,NA12740,NA12802,NA12872,NA18504,NA18517,NA18537,NA18552,NA18563,NA18572,NA18860,NA18942,NA19132,NA19144,NA19221,NA19240 nsv442189 7 141500583 141519301 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv14 7 141501682 141557369 CNV Loss Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv14 S 1 0 1 "" NA15510 nsv438008 7 141502444 141518419 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv469313,nssv469237,nssv469358,nssv469379,nssv469257,nssv469315,nssv469446,nssv469267,nssv469283,nssv469449,nssv469431,nssv469388,nssv469400,nssv469438,nssv469251,nssv469292,nssv469335,nssv469347,nssv469246,nssv469424,nssv469380,nssv469311,nssv469343,nssv469357,nssv469355,nssv469249,nssv469411,nssv469333,nssv469327,nssv469278,nssv469236,nssv469294,nssv469455,nssv469364,nssv469216,nssv469234,nssv469233,nssv469439,nssv469227,nssv469444,nssv469345,nssv469442,nssv469433,nssv469415,nssv469432,nssv469454,nssv469271,nssv469277,nssv469322,nssv469270,nssv469369,nssv469235,nssv469244,nssv469413,nssv469298,nssv469346,nssv469276,nssv469229,nssv469404,nssv469232,nssv469392,nssv469426,nssv469336,nssv469402,nssv469401,nssv469282,nssv469316,nssv469387,nssv469222,nssv469356,nssv469340,nssv469425,nssv469324,nssv469238,nssv469214,nssv469295,nssv469272,nssv469382,nssv469301,nssv469337,nssv469384,nssv469375,nssv469293,nssv469394,nssv469264,nssv469458,nssv469287,nssv469416,nssv469255,nssv469259,nssv469302,nssv469434,nssv469242,nssv469447,nssv469253,nssv469414,nssv469451,nssv469360,nssv469350,nssv469368,nssv469421,nssv469397,nssv469409,nssv469423,nssv469245,nssv469258,nssv469448,nssv469370,nssv469362,nssv469281,nssv469365,nssv469279,nssv469326,nssv469221,nssv469339,nssv469269,nssv469268,nssv469462,nssv469422,nssv469260,nssv469465,nssv469332,nssv469220,nssv469359,nssv469243,nssv469307,nssv469338,nssv469223,nssv469224,nssv469383,nssv469273,nssv469412,nssv469399,nssv469351,nssv469226,nssv469389,nssv469418,nssv469254,nssv469231,nssv469461,nssv469318,nssv469372,nssv469342,nssv469306,nssv469395,nssv469265,nssv469323,nssv469353,nssv469228,nssv469349,nssv469331,nssv469417,nssv469378,nssv469317,nssv469443,nssv469440,nssv469460,nssv469405,nssv469334,nssv469344,nssv469459,nssv469373,nssv469309,nssv469429,nssv469393,nssv469266,nssv469291,nssv469215,nssv469247,nssv469303,nssv469248,nssv469240,nssv469280,nssv469410,nssv469325,nssv469262,nssv469275,nssv469348,nssv469304,nssv469305,nssv469377,nssv469218,nssv469427,nssv469367,nssv469457,nssv469453,nssv469420,nssv469328,nssv469445,nssv469428,nssv469435,nssv469239,nssv469398,nssv469256,nssv469290,nssv469376,nssv469386,nssv469437,nssv469225,nssv469361,nssv469456,nssv469403,nssv469371,nssv469450,nssv469250,nssv469289,nssv469213,nssv469310,nssv469320,nssv469261,nssv469312,nssv469406,nssv469366,nssv469284,nssv469321,nssv469286,nssv469354,nssv469329,nssv469390,nssv469464,nssv469288,nssv469381,nssv469300,nssv469217,nssv469299,nssv469436,nssv469391,nssv469314 M 269 0 118 Samples from several populations that are part of the HapMap project. "" NA07034,NA07048,NA07055,NA07357,NA10838,NA10839,NA10851,NA10855,NA10860,NA11832,NA11992,NA11995,NA12004,NA12006,NA12044,NA12057,NA12144,NA12154,NA12156,NA12761,NA12762,NA12802,NA12815,NA12864,NA12872,NA12892,NA18500,NA18501,NA18504,NA18506,NA18507,NA18508,NA18515,NA18516,NA18517,NA18521,NA18524,NA18526,NA18532,NA18537,NA18545,NA18547,NA18550,NA18552,NA18558,NA18561,NA18563,NA18573,NA18579,NA18593,NA18594,NA18603,NA18608,NA18620,NA18621,NA18622,NA18633,NA18635,NA18637,NA18852,NA18854,NA18855,NA18857,NA18858,NA18859,NA18860,NA18870,NA18871,NA18872,NA18912,NA18913,NA18914,NA18942,NA18944,NA18945,NA18947,NA18953,NA18956,NA18961,NA18964,NA18965,NA18967,NA18968,NA18973,NA18976,NA18978,NA18987,NA18990,NA18992,NA18997,NA18998,NA19000,NA19003,NA19093,NA19099,NA19100,NA19102,NA19116,NA19128,NA19129,NA19130,NA19132,NA19138,NA19143,NA19144,NA19145,NA19153,NA19160,NA19192,NA19194,NA19200,NA19202,NA19203,NA19208,NA19210,NA19223,NA19239,NA19240 nsv508485 7 141504745 141526426 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617353 S 4 0 1 "" CHM esv33581 7 141511719 141528375 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100682 S 51 1 0 "" 21656 esv32542 7 141532539 141532731 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101622 S 51 0 1 "" 21909 esv33158 7 141532731 141533711 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93954 S 51 0 1 "" 21634 dgv90n68 7 141610138 141840748 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH nsv831164,nsv831163 M 95 7 0 "" dgv2143e1 7 141610138 142240984 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv4571,essv7138,essv6924,esv662 M 271 0 0 "" NA18524,NA18537,NA18605 nsv5980 7 141633298 141667048 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8438 S 9 1 0 "" NA12156 dgv431n21 7 141644087 141645340 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv526096,nsv520143,nsv526790 M 2026 0 4 "" nsv508486 7 141679716 141730315 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617354 S 4 0 1 "" CHM essv25031 7 141686975 141718376 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12801 nsv8220 7 141696957 141717615 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16395 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18537 nsv442194 7 141698304 141709599 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv516985 7 141702280 141711358 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv690581,nssv661114,nssv686076,nssv692825,nssv668320,nssv660575,nssv661644,nssv659256,nssv675914,nssv691255,nssv676132,nssv687829,nssv657707,nssv693076,nssv679510,nssv652566,nssv651711,nssv653475,nssv656598,nssv688623,nssv684140,nssv689189,nssv654167,nssv670681,nssv684515,nssv680198,nssv670747,nssv657485,nssv687098,nssv666467,nssv660502,nssv662518,nssv662851,nssv683547 M 2026 0 34 "" nsv818561 7 141702280 141711358 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416075,nssv1416074,nssv1417320,nssv1417122 M 112 0 4 "" NA12801,NA12813,NA18537,NA18608 dgv839n27 7 141702280 141715454 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv465154,nsv465151,nsv465152,nsv465153,nsv465156,nsv465159,nsv465149,nsv465157,nsv465155,nsv465158 M 1557 0 10 "" HGDP00837,HGDP00857,HGDP00863,HGDP00864,HGDP00995,HGDP00998,HGDP00999,HGDP01013,HGDP01014,HGDP01019 nsv438009 7 141703218 141715295 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv469467,nssv469466 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA12801,NA12813 essv6085 7 141708117 141710769 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18621 nsv8221 7 141717615 141735324 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19740 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19221 nsv526626 7 141725397 141729335 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702947 S 2026 0 1 "" nsv518174 7 141739700 141749947 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695595 S 2026 0 1 "" essv19843 7 141739700 141983328 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12234 nsv465160 7 141749947 141812341 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541016 S 1557 0 1 "" 1798860570_A nsv831165 7 141750162 141919082 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446556,nssv1446545,nssv1446549,nssv1446547,nssv1446557,nssv1446550,nssv1446555,nssv1446553,nssv1446554,nssv1446546,nssv1446548,nssv1446552 M 95 12 0 "" nsv365295 7 141757244 141760565 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv383873 M 24 "" nsv8222 7 141758892 141762197 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18953,nssv15977,nssv16979,nssv16698,nssv15365,nssv15902 M 31 0 6 Samples from several populations that are part of the HapMap project. "" NA07029,NA10847,NA18563,NA18564,NA18972,NA19173 nsv818562 7 141762958 141824539 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417683 S 112 0 1 "" NA12234 dgv840n27 7 141775800 141812341 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv465166,nsv465162,nsv465165,nsv465164,nsv465163 M 1557 0 5 "" 1780854197_A,1780862019_A,HGDP00974,HGDP01298,NINDS_230 nsv517051 7 141775800 141812341 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv674068,nssv653692,nssv667352,nssv658533,nssv664570,nssv684631,nssv678340,nssv672164,nssv654271,nssv692658,nssv675219,nssv685782,nssv670081 M 2026 0 13 "" nsv438010 7 141776488 141811030 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv469468,nssv469469,nssv469470,nssv469471 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA10846,NA12144 nsv442073 7 141776581 141811879 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv2144e1 7 141778074 141813948 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv24217,essv24645 M 271 0 0 "" NA10846,NA12144 nsv5981 7 141791277 141836042 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8439 S 9 0 1 "" NA12156 nsv831166 7 141813913 141973680 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446558,nssv1446560,nssv1446559 M 95 1 2 "" dgv2145e1 7 141813913 142240984 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv3202,essv24694,essv23004,essv542,essv1390,essv7373,essv18606,essv5901,essv21074,essv7156,essv6331,essv1520,essv4089,essv4804,essv4285,essv4410,essv10667,essv6123,essv4683,essv1453,essv1933,essv1997,essv436,essv655,essv5578 M 271 0 0 "" NA06991,NA11829,NA12234,NA12812,NA18529,NA18532,NA18547,NA18550,NA18573,NA18603,NA18609,NA18620,NA18622,NA18623,NA18635,NA18855,NA18944,NA18949,NA18952,NA18959,NA18974,NA18975,NA18980,NA18998,NA19007 nsv517821 7 141816478 141824539 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695225 S 2026 0 1 "" dgv841n27 7 141821113 142024344 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv465167,nsv465171,nsv465168,nsv465174,nsv465169 M 1557 0 5 "" HGDP00542,HGDP00972,HGDP01205,HGDP01287,HGDP01311 essv19150 7 141827095 142018646 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12812 esv34617 7 141836942 141998293 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6988077,essv6978967,essv6978968,essv6978969 M 771 0 1 "" NA12812 nsv465170 7 141856113 141911178 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541026 S 1557 0 1 "" 1780854009_A nsv8223 7 141859116 141862177 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16858,nssv16357,nssv16007,nssv17009,nssv19800,nssv14801 M 31 0 6 Samples from several populations that are part of the HapMap project. "" NA11830,NA12872,NA18563,NA19144,NA19173,NA19221 nsv818563 7 141880809 141998849 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416076 S 112 0 1 "" NA12812 nsv831167 7 141887557 142030287 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446566,nssv1446564,nssv1446563,nssv1446565,nssv1446561 M 95 3 2 "" dgv2146e1 7 141899421 142018646 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1661,essv4099 M 271 0 0 "" NA18529,NA18961 nsv818564 7 141921239 141998849 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417098 S 112 0 1 "" NA18529 nsv508487 7 141927252 141998964 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618823,nssv620000,nssv617356,nssv622588 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv15 7 141948871 142002444 CNV Loss Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv15 S 1 0 1 "" NA15510 nsv5982 7 141948871 142047232 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9729,nssv1691,nssv10583,nssv8441,nssv1690,nssv11164,nssv5023,nssv1689,nssv6173 M 9 0 6 "" NA12156,NA15510,NA18507,NA18555,NA18956,NA19129 nsv8224 7 141958946 141993843 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17228,nssv16728,nssv17229,nssv16455,nssv15896,nssv15412,nssv15395,nssv16485,nssv16596,nssv16306,nssv15932,nssv19304,nssv15594,nssv15926,nssv16888,nssv16135,nssv16165,nssv15564,nssv18983,nssv16054,nssv14831 M 31 0 17 Samples from several populations that are part of the HapMap project. "" NA07029,NA10839,NA10847,NA10863,NA12155,NA12740,NA12872,NA18517,NA18537,NA18552,NA18564,NA18942,NA18972,NA18975,NA18980,NA19007,NA19144 nsv442207 7 141962324 141974201 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" esv32956 7 141962385 141985016 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101613,essv93915,essv100663,essv98287,essv94117,essv101372,essv97030,essv97909,essv93133,essv101719,essv94484,essv92724,essv96175,essv96693,essv97160,essv99949,essv96078,essv93542,essv92536,essv98112,essv96553,essv100226,essv99553,essv98443,essv96265 M 51 14 11 "" 21603,21634,21656,21772,21802,21805,21817,21837,21863,21909,21932,21944,22007,22011,22075,22086,22127,22128,22233,22259,22261,22286,22335,22352,22371 nsv438011 7 141967592 141977378 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv469535,nssv469555,nssv469482,nssv469533,nssv469529,nssv469546,nssv469476,nssv469565,nssv469557,nssv469539,nssv469478,nssv469564,nssv469561,nssv469572,nssv469549,nssv469548,nssv469577,nssv469528,nssv469475,nssv469525,nssv469504,nssv469494,nssv469493,nssv469531,nssv469499,nssv469510,nssv469522,nssv469566,nssv469495,nssv469488,nssv469558,nssv469511,nssv469568,nssv469542,nssv469550,nssv469544,nssv469487,nssv469480,nssv469517,nssv469521,nssv469506,nssv469527,nssv469498,nssv469575,nssv469576,nssv469502,nssv469559,nssv469490,nssv469489,nssv469538,nssv469473,nssv469534,nssv469477,nssv469492,nssv469481,nssv469505,nssv469523,nssv469536,nssv469540,nssv469553,nssv469573,nssv469562,nssv469545,nssv469551,nssv469515,nssv469508,nssv469570,nssv469501,nssv469547,nssv469512,nssv469567,nssv469560,nssv469497,nssv469484,nssv469472,nssv469483,nssv469569,nssv469486,nssv469479,nssv469524,nssv469509,nssv469556,nssv469520,nssv469554,nssv469500,nssv469513,nssv469526,nssv469516,nssv469514,nssv469543,nssv469571,nssv469537,nssv469503,nssv469532,nssv469491 M 269 0 57 Samples from several populations that are part of the HapMap project. "" NA06991,NA07345,NA10846,NA10851,NA11829,NA11993,NA12264,NA12716,NA12761,NA12812,NA18524,NA18529,NA18532,NA18537,NA18547,NA18550,NA18552,NA18555,NA18561,NA18571,NA18573,NA18577,NA18582,NA18603,NA18605,NA18609,NA18611,NA18620,NA18621,NA18622,NA18623,NA18635,NA18636,NA18637,NA18940,NA18943,NA18944,NA18945,NA18949,NA18952,NA18956,NA18959,NA18960,NA18961,NA18966,NA18970,NA18973,NA18974,NA18975,NA18978,NA18980,NA18990,NA18992,NA18995,NA18998,NA19003,NA19007 nsv8226 7 142000868 142012248 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16593 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA07048 nsv831168 7 142045199 142239842 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446567 S 95 1 0 "" nsv526015 7 142079573 142158044 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702243 S 2026 1 0 "" nsv520735 7 142080090 142158044 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv679629,nssv674860 M 2026 0 2 "" nsv465175 7 142284587 142398377 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541031 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00606 dgv432n21 7 142309495 142422842 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv520261,nsv516782 M 2026 0 25 "" nsv5983 7 142335096 142342547 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv690 S 9 1 0 "" NA19240 nsv465176 7 142347460 142398377 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541032 S 1557 0 1 "" 1780862196_A esv32655 7 142367120 142380827 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101224,essv98065 M 51 0 2 "" 21618,22259 nsv831169 7 142402113 142561955 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446568 S 95 0 1 "" nsv508488 7 142409125 142473203 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618824 S 4 0 1 "" NA10860 nsv5984 7 142518934 142564100 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8442 S 9 0 1 "" NA12156 nsv5985 7 142522724 142552406 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5024 S 9 1 0 "" NA19129 nsv517520 7 142566810 142613937 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv663766,nssv658567,nssv652261,nssv691992,nssv660138,nssv678482,nssv686691,nssv666309,nssv652294,nssv670866,nssv690766,nssv683655,nssv671532 M 2026 0 13 "" nsv482115 7 142595197 142605039 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558476 S 1 1 0 "" KB1 dgv2147e1 7 142664612 143100064 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv810,essv16837,essv14995,essv2241,essv24291,essv551,essv15510,essv9421,essv6401,essv900,essv11938,essv5573,essv12835,essv17151,essv6293,essv1497,essv12231,essv13673,essv13587,essv24775,essv2811,essv4680,essv4134,essv1387,essv19655,essv11052,essv7354,essv17036,essv12343,essv14476,essv5026,essv4424,essv11261,essv13413,essv8189,essv652,essv9889,essv12488,essv4090,essv23796,essv13738,essv19287,essv23071,essv23987,essv7694,essv11449,essv8389,essv9030,essv24579,essv22341,essv210,essv14085,essv6719,essv23256,essv2537,essv15344,essv21174,essv9763,essv23838,essv5816,essv17041,essv10869,essv8314,essv16811,essv16255,essv9737,essv5202,essv12724,essv15737,essv1622,essv18727,essv3794,essv24899,essv10075,essv22819,essv23672,essv12681,essv10919,essv20196,essv1952,essv17226,essv15057,essv9207,essv3114,essv4004,essv10197 M 271 0 0 "" NA06985,NA06994,NA07022,NA07029,NA10838,NA10856,NA10860,NA10863,NA11830,NA11832,NA11992,NA12004,NA12264,NA12716,NA12763,NA12812,NA12874,NA18500,NA18502,NA18503,NA18505,NA18529,NA18555,NA18566,NA18570,NA18572,NA18573,NA18576,NA18608,NA18609,NA18611,NA18622,NA18633,NA18635,NA18857,NA18858,NA18861,NA18862,NA18863,NA18870,NA18871,NA18872,NA18913,NA18914,NA18942,NA18943,NA18948,NA18959,NA18966,NA18969,NA18970,NA18973,NA18975,NA18980,NA18987,NA18998,NA19000,NA19003,NA19007,NA19099,NA19101,NA19103,NA19116,NA19119,NA19120,NA19127,NA19128,NA19129,NA19131,NA19132,NA19138,NA19143,NA19144,NA19145,NA19152,NA19153,NA19161,NA19171,NA19172,NA19192,NA19201,NA19204,NA19205,NA19207,NA19208,NA19209 dgv2148e1 7 142664612 143806286 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv16133,essv10771,essv3180,essv8756,essv15253,essv24693,essv12541,essv8163,essv17281,essv15606,essv15635,esv435,essv10383,essv7274,essv11881,essv7148,essv21529,essv11629 M 271 0 0 "" NA11829,NA12873,NA18523,NA18547,NA18592,NA18856,NA18912,NA19012,NA19092,NA19094,NA19098,NA19100,NA19137,NA19154,NA19206,NA19221,NA19222 nsv831171 7 142704281 142763109 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446574,nssv1446569,nssv1446571,nssv1446570,nssv1446572,nssv1446578,nssv1446575,nssv1446577,nssv1446576,nssv1446579,nssv1446580,nssv1446581 M 95 3 9 "" esv2422489 7 142724871 143173683 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161421 S 181 1 0 "" ND04045 nsv8227 7 142733678 143513188 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15562,nssv18627,nssv16195,nssv17318,nssv17288,nssv16507,nssv15455,nssv16926,nssv16396,nssv18537,nssv18372,nssv16366,nssv16896,nssv15986,nssv19920,nssv18741,nssv16716,nssv17039,nssv18252,nssv15079,nssv15956,nssv16818,nssv15532,nssv15340,nssv16545,nssv16447,nssv15310,nssv16144,nssv16866,nssv19950,nssv16477,nssv18567,nssv15049,nssv16836,nssv18711,nssv16070,nssv16112,nssv16022,nssv16788,nssv15472,nssv16626,nssv14861,nssv15019,nssv15280,nssv16656,nssv15962,nssv16037,nssv16204,nssv16776,nssv19013,nssv18597,nssv14921,nssv16948,nssv17491,nssv16052,nssv16806,nssv15515,nssv17461,nssv15502,nssv16174,nssv16336,nssv16456,nssv18282,nssv16515,nssv16537,nssv18312,nssv15624,nssv15485,nssv15684,nssv16575,nssv16142,nssv14891,nssv19890,nssv19334,nssv15992,nssv19830,nssv17258,nssv16160,nssv18342,nssv16686,nssv16130,nssv19860,nssv16040,nssv16918,nssv19980,nssv16387,nssv15654,nssv16016,nssv16114 M 31 11 27 Samples from several populations that are part of the HapMap project. "" NA07029,NA10839,NA10847,NA10863,NA11830,NA12155,NA12802,NA12872,NA18502,NA18517,NA18537,NA18552,NA18563,NA18564,NA18572,NA18853,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19144,NA19173,NA19221,NA19240 dgv9n29 7 142735783 142914994 CNV Complex Locke et al 2006 16826518 BAC_aCGH nsv469589,nsv469753 M 265 41 3 "" nsv442210 7 142735805 143005707 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv831172 7 142740171 142769533 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446582,nssv1446583,nssv1446585,nssv1446588,nssv1446594,nssv1446586,nssv1446587,nssv1446593,nssv1446589,nssv1446590,nssv1446592,nssv1446591 M 95 2 10 "" nsv7408 7 142775742 143043904 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6174,nssv11165,nssv5025,nssv6175,nssv9449,nssv1692,nssv3586,nssv11166,nssv5026,nssv9730 M 9 0 0 "" NA12156,NA12878,NA15510,NA18507,NA18517,NA18555,NA19129 nsv5986 7 142795481 142829843 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2777 S 9 1 0 "" NA18555 nsv16 7 142807852 143043869 OTHER Inversion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv16 S 1 0 0 "" NA15510 essv11145 7 142835546 143018052 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19211 nsv520055 7 142863026 142870567 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697198 S 2026 0 1 "" nsv818565 7 142863026 142870567 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415728 S 112 1 0 "" NA19140 nsv522225 7 142863026 143311838 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695002 S 2026 1 0 "" nsv17 7 142867441 142979905 OTHER Inversion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv17 S 1 0 0 "" NA15510 nsv469570 7 142875907 143093432 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649683 M 265 12 13 Samples from several populations that are part of the HapMap project. "" nsv471645 7 142875908 143093432 CNV Gain+Loss Sharp et al 2005 15918152 BAC_aCGH,FISH Eichler Segmental Duplication BAC array nssv549389,nssv549391,nssv549393,nssv549387,nssv549394,nssv549396,nssv549390,nssv549388,nssv549392,nssv549397,nssv549395,nssv549386,nssv549385 M 48 4 9 "" JK1051,JK1688,NA10469,NA10471,NA10472,NA10967,NA10969,NA10970,NA10971,NA10976,NA11776,NA17016,NA17017 esv33716 7 142953168 142985524 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98630 S 51 1 0 "" 22085 dgv842n27 7 142983367 143311838 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv465179,nsv465178,nsv465181 M 1557 3 0 "" HGDP00013,HGDP01293,NINDS_149 esv2752147 7 143009934 143304180 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6982880,essv6982881,essv6982882,essv6986296 M 771 1 0 "" BEC_607 dgv2149e1 7 143052813 143806286 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv3288,essv10345,essv1606,essv1873,essv18723,essv7804,essv8476,essv2588,essv22683,essv11824,essv17898,essv16414,essv21841,essv14403,essv1765,essv15416,essv533,essv4606,essv6988,essv22074,essv14563,essv3701,essv21195,essv19592,essv23458,essv24481,essv16488,essv12275,essv8280,essv7313,essv13734,essv18279,essv23249,essv15732,essv4489,essv9247,essv15098,essv4873,essv24971,essv7378,essv9019,essv10476,essv18364,essv4192,essv11965,essv16683,essv19668,essv668,essv24424,essv24813,essv368,essv5148,essv22421,essv23443,essv13784,essv6616,essv9643,essv14313,essv5385,essv23991,essv10131,essv20118,essv8849,essv12327,essv22180,essv12405,essv17831,essv8600,essv14619,essv14135,essv2787,essv16332,essv19405,essv11582,essv10220,essv24525,essv13473,essv13142,essv9397,essv24915,essv9423,essv3772,essv13923,essv10648,essv11438,essv24577,essv4258,essv23326,essv12984,essv9133,essv14092,essv21141,essv15347,essv20207,essv22904,essv14971,essv10851,essv19901,essv16762,essv5054,essv17731,essv21985,essv19987,essv9651,essv4700,essv17190,essv20562,essv22163,essv12726,essv17077,essv5510,essv14420,essv3368,essv23140,essv2271,essv237,essv9779,essv1218,essv18973,essv7603,essv13554,essv10582,essv8912,essv4726,essv23626,essv22316,essv13644,essv17276,essv17471,essv14857,essv111,essv15479,essv15855,essv2315,essv21449 M 271 0 0 "" NA06985,NA06994,NA07029,NA07034,NA07048,NA07056,NA07345,NA10831,NA10839,NA10846,NA10854,NA10857,NA10860,NA10861,NA11830,NA11832,NA11839,NA11840,NA11992,NA11995,NA12003,NA12005,NA12006,NA12044,NA12056,NA12154,NA12155,NA12249,NA12264,NA12707,NA12716,NA12717,NA12750,NA12752,NA12760,NA12762,NA12802,NA12813,NA12815,NA12872,NA12874,NA12891,NA18503,NA18505,NA18506,NA18507,NA18508,NA18515,NA18516,NA18517,NA18521,NA18522,NA18524,NA18526,NA18545,NA18552,NA18558,NA18561,NA18563,NA18564,NA18570,NA18576,NA18603,NA18612,NA18620,NA18621,NA18622,NA18623,NA18632,NA18853,NA18854,NA18855,NA18857,NA18859,NA18860,NA18861,NA18862,NA18863,NA18870,NA18871,NA18872,NA18913,NA18914,NA18940,NA18942,NA18945,NA18947,NA18948,NA18951,NA18961,NA18966,NA18968,NA18971,NA18972,NA18975,NA18976,NA18987,NA18990,NA18997,NA18998,NA19093,NA19101,NA19102,NA19103,NA19119,NA19127,NA19128,NA19129,NA19130,NA19131,NA19132,NA19138,NA19139,NA19140,NA19141,NA19142,NA19152,NA19153,NA19160,NA19171,NA19172,NA19173,NA19192,NA19193,NA19194,NA19200,NA19201,NA19202,NA19203,NA19208,NA19210,NA19223,NA19238,NA19239,NA19240 nsv831173 7 143095419 143267019 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446596 S 95 1 0 "" nsv525543 7 143110612 143125220 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701680 S 2026 0 1 "" nsv5987 7 143115293 143154287 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5028 S 9 0 1 "" NA19129 nsv437578 7 143117968 143134233 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467459 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19129 nsv465183 7 143123485 143125220 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541036 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01416 nsv516996 7 143123485 143125220 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv685717,nssv676090,nssv690744,nssv656665,nssv657447,nssv671630,nssv660602,nssv684172,nssv656578,nssv688534,nssv674990,nssv675801,nssv659844,nssv666929,nssv653486,nssv680525,nssv653853,nssv677543,nssv674444,nssv680636,nssv653358,nssv682099,nssv653196,nssv691858,nssv692181,nssv659208,nssv671653,nssv657794,nssv663310 M 2026 0 29 "" nsv818566 7 143123485 143125220 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416563,nssv1416564 M 112 0 2 "" NA19171,NA19173 nsv821653 7 143146751 143161058 CNV Loss Sebat_et_al_2004 15273396 ROMA Custom Nimblegen photoprint 85000 probe ROMA oligo array nssv1421199,nssv1421198,nssv1421197 M 31 0 3 "" nsv442219 7 143147744 143148799 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv2150e1 7 143176789 143479566 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv20227,essv2651,essv5585,essv7066,essv2444,essv4636,essv1399,essv23175,essv5260,essv3892,essv310,essv4136,essv12468,essv18453,essv8366,essv6338,essv5716,essv24125,essv6382,essv17436 M 271 0 0 "" NA10847,NA11831,NA12043,NA12144,NA12156,NA18529,NA18537,NA18555,NA18572,NA18593,NA18594,NA18609,NA18624,NA18858,NA18967,NA18978,NA18994,NA18999,NA19007,NA19207 nsv831174 7 143182512 143354063 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446602,nssv1446597,nssv1446598,nssv1446601,nssv1446600,nssv1446603,nssv1446604,nssv1446599 M 95 0 8 "" nsv507424 7 143185447 143191447 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623022,nssv617753 M 4 2 0 "" CHM,NA18994 nsv471453 7 143208961 143209892 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548319,nssv548320,nssv548321 M 3 "" essv3984 7 143283127 143479566 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18970 nsv7411 7 143295519 143547168 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1693,nssv9732,nssv3587,nssv10587,nssv9731,nssv10586,nssv6177,nssv691,nssv10585,nssv5029,nssv1695,nssv9450,nssv6176,nssv9451,nssv10584,nssv1694,nssv692,nssv3589,nssv3588 M 9 0 0 "" NA12156,NA12878,NA18507,NA18517,NA18555,NA18956,NA19129,NA19240 dgv24n31 7 143313333 143512027 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis nsv471485,nsv471516,nsv471515,nsv471486 M 3 "" nsv831175 7 143317195 143511372 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446658,nssv1446650,nssv1446608,nssv1446612,nssv1446661,nssv1446630,nssv1446622,nssv1446645,nssv1446619,nssv1446639,nssv1446616,nssv1446656,nssv1446627,nssv1446644,nssv1446613,nssv1446623,nssv1446657,nssv1446655,nssv1446624,nssv1446614,nssv1446626,nssv1446641,nssv1446605,nssv1446664,nssv1446615,nssv1446649,nssv1446660,nssv1446659,nssv1446607,nssv1446663,nssv1446618,nssv1446648,nssv1446647,nssv1446646,nssv1446611,nssv1446643,nssv1446653,nssv1446652,nssv1446638,nssv1446632,nssv1446609,nssv1446631,nssv1446621,nssv1446637,nssv1446620,nssv1446633,nssv1446625,nssv1446610,nssv1446654,nssv1446635,nssv1446636,nssv1446642,nssv1446634 M 95 0 53 "" nsv831176 7 143317949 143356258 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446727,nssv1446685,nssv1446683,nssv1446709,nssv1446716,nssv1446690,nssv1446698,nssv1446688,nssv1446713,nssv1446710,nssv1446682,nssv1446712,nssv1446711,nssv1446681,nssv1446689,nssv1446715,nssv1446714,nssv1446687,nssv1446719,nssv1446693,nssv1446726,nssv1446697,nssv1446669,nssv1446692,nssv1446718,nssv1446691,nssv1446666,nssv1446721,nssv1446694,nssv1446720,nssv1446668,nssv1446696,nssv1446725,nssv1446665,nssv1446724,nssv1446722,nssv1446723,nssv1446667,nssv1446674,nssv1446730,nssv1446708,nssv1446670,nssv1446700,nssv1446734,nssv1446671,nssv1446702,nssv1446699,nssv1446729,nssv1446680,nssv1446686,nssv1446733,nssv1446701,nssv1446731,nssv1446732,nssv1446672,nssv1446735,nssv1446737,nssv1446679,nssv1446707,nssv1446736,nssv1446705,nssv1446675,nssv1446704,nssv1446703,nssv1446678,nssv1446676,nssv1446677 M 95 0 67 "" nsv471454 7 143321325 143330384 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548324,nssv548325,nssv548323 M 3 "" nsv482116 7 143321325 143330384 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558477 S 1 1 0 "" KB1 esv33253 7 143321701 143391092 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101580,essv98666,essv97461,essv93941,essv100862,essv96775,essv100987,essv95115,essv98231,essv94782,essv94070,essv101390,essv94343,essv97069,essv95668,essv95525,essv93081,essv95357,essv101728,essv95762,essv94560,essv99036,essv92836,essv92711,essv93697,essv96083,essv96720,essv97136,essv98579,essv99994,essv96056,essv93497,essv93328,essv99568,essv92572,essv98107,essv99348,essv97751,essv100162,essv100359,essv99425,essv98412,essv96373,essv94162 M 51 44 0 "" 21603,21606,21616,21634,21656,21659,21693,21721,21772,21791,21802,21805,21808,21817,21841,21847,21863,21872,21909,21911,21932,21938,21939,21944,21972,22007,22011,22075,22085,22086,22127,22128,22170,22217,22233,22259,22275,22278,22286,22300,22335,22352,22371,22394 nsv433394 7 143324924 143465187 CNV Gain Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463275 S 9 1 0 Samples from several populations that are part of the HapMap project. "" NA12156 nsv508489 7 143331529 143430099 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620001 S 4 0 1 "" NA15510 nsv469769 7 143343592 143497470 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649790 M 265 97 2 Samples from several populations that are part of the HapMap project. "" nsv471646 7 143343593 143497470 CNV Gain+Loss Sharp et al 2005 15918152 BAC_aCGH,FISH Eichler Segmental Duplication BAC array nssv550510,nssv550523,nssv550508,nssv550507,nssv550511,nssv550524,nssv550520,nssv550506,nssv550514,nssv550516,nssv550521,nssv550522,nssv550526,nssv550519,nssv550515,nssv550518,nssv550512,nssv550525,nssv550505,nssv550513,nssv550509,nssv550517 M 48 20 2 "" JK1688,JK776,NA10472,NA10473,NA10494,NA10495,NA10967,NA10969,NA10970,NA15725,NA15728,NA15729,NA15730,NA16688,NA17014,NA17015,NA17016,NA17017,NA17020,NA17052,NA17058,NA17059 nsv510970 7 143372974 143447486 OTHER Inversion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622384 S 4 0 0 "" NA10860 nsv509222 7 143447486 143447486 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618068 S 4 1 0 "" CHM nsv471455 7 143452866 143453796 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548327,nssv548328,nssv548326 M 3 "" nsv831177 7 143471913 143646353 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446763,nssv1446786,nssv1446746,nssv1446752,nssv1446748,nssv1446750,nssv1446749,nssv1446783,nssv1446747,nssv1446753,nssv1446782,nssv1446754,nssv1446757,nssv1446755,nssv1446756,nssv1446761,nssv1446785,nssv1446758,nssv1446760,nssv1446759,nssv1446766,nssv1446745,nssv1446781,nssv1446765,nssv1446764,nssv1446770,nssv1446769,nssv1446767,nssv1446768,nssv1446779,nssv1446744,nssv1446771,nssv1446772,nssv1446743,nssv1446778,nssv1446738,nssv1446780,nssv1446741,nssv1446776,nssv1446775,nssv1446742,nssv1446774,nssv1446777 M 95 0 43 "" nsv471456 7 143490137 143515372 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548331,nssv548330,nssv548329 M 3 "" nsv482117 7 143490137 143515372 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558478 S 1 1 0 "" KB1 nsv831178 7 143675486 143835792 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446787 S 95 1 0 "" nsv8228 7 143740103 143743410 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17069 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19173 nsv525072 7 143757862 143759559 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701126 S 2026 0 1 "" nsv528077 7 143870995 143888317 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704613 S 2026 0 1 "" dgv136n17 7 143918197 143924149 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437580,nsv437581 M 60 0 2 "" NA18854,NA19205 nsv5989 7 144099594 144132196 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6178 S 9 1 0 "" NA12156 nsv831179 7 144267725 144436499 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446788 S 95 1 0 "" dgv433n21 7 144278372 144283243 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv517858,nsv527030 M 2026 0 2 "" nsv365422 7 144354530 144359046 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384000 M 24 "" nsv522818 7 144452447 144456375 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698466 S 2026 0 1 "" nsv831180 7 144701554 144863493 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446789 S 95 0 1 "" nsv507425 7 144745830 144751830 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621895 S 4 1 0 "" NA10860 nsv831182 7 144837454 144994137 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446790 S 95 0 1 "" nsv5990 7 144943032 144977878 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3591 S 9 1 0 "" NA12878 nsv5991 7 145058089 145089949 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5030 S 9 1 0 "" NA19129 nsv527435 7 145155198 145169651 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703875 S 2026 0 1 "" nsv465185 7 145231727 145237330 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541038 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00931 nsv5992 7 145360392 145405068 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8443 S 9 0 1 "" NA12156 nsv5993 7 145408277 145453624 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6179 S 9 0 1 "" NA12156 nsv524528 7 145435759 145523970 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700477 S 2026 0 1 "" nsv5994 7 145569625 145588932 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9912 S 9 0 1 "" NA18507 nsv442075 7 145571515 145577556 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv465186 7 145630525 145692308 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541039 S 1557 1 0 "" NINDS_197 nsv515777 7 145663096 145692308 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv691783,nssv681860,nssv690718,nssv683717,nssv693117,nssv680401,nssv675650,nssv678740,nssv664746,nssv669873,nssv678409,nssv660855,nssv668863,nssv690052,nssv659316 M 2026 5 10 "" dgv843n27 7 145663096 145694969 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv465187,nsv465188,nsv465189,nsv465190 M 1557 4 0 "" 1780854296_A,1780854393_A,1780862260_A,HGDP01058 nsv526330 7 145779970 145808829 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702620 S 2026 0 1 "" nsv525283 7 145844027 145851145 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701387 S 2026 0 1 "" nsv5995 7 145866579 145888286 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3592 S 9 1 0 "" NA12878 nsv522917 7 145884415 146132089 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698578 S 2026 0 1 "" nsv521212 7 145975409 145984657 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697848 S 2026 0 1 "" nsv818568 7 145975409 146009924 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418473 S 112 0 1 "" NA19193 nsv517352 7 145977004 145977058 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv679865,nssv660806,nssv674692,nssv658463,nssv674915,nssv675802,nssv653864 M 2026 0 7 "" nsv818569 7 145977004 145980635 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418162,nssv1418163 M 112 0 2 "" NA19143,NA19145 nsv507426 7 146006413 146012413 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621896 S 4 1 0 "" NA10860 nsv523284 7 146008608 146024104 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699023 S 2026 0 1 "" nsv519590 7 146008831 146027798 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696939 S 2026 1 0 "" nsv522426 7 146189283 146192102 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705779 S 2026 1 0 "" nsv521548 7 146304987 146309561 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698163 S 2026 0 1 "" nsv5996 7 146343347 146388333 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8444 S 9 0 1 "" NA12156 esv33975 7 146406088 146428984 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101395 S 51 0 1 "" 21805 nsv526693 7 146449036 146491898 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703030 S 2026 1 0 "" nsv5997 7 146499287 146529681 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv693 S 9 1 0 "" NA19240 nsv517892 7 146533834 146535006 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695300 S 2026 1 0 "" nsv365559 7 146709872 146709924 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384137 M 24 "" nsv507427 7 146755943 146761943 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623023 S 4 1 0 "" NA18994 dgv434n21 7 146775390 146798465 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv516942,nsv527018 M 2026 0 5 "" nsv510119 7 146872006 146878006 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622149,nssv618276,nssv624052,nssv621326 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv366964 7 146909971 146910024 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv385542 M 24 "" nsv365313 7 146910045 146910152 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv383891 M 24 "" nsv465193 7 146950267 147021328 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541044 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00822 nsv523350 7 147124813 147125529 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699099 S 2026 0 1 "" nsv366532 7 147292982 147299351 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv385110 M 24 "" nsv509223 7 147382022 147476121 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623519 S 4 1 0 "" NA18994 nsv366677 7 147428791 147431285 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv385255 M 24 "" nsv5998 7 147440807 147473096 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv694 S 9 1 0 "" NA19240 nsv6000 7 147477801 147521522 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6180 S 9 0 1 "" NA12156 nsv366797 7 147510512 147513971 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv385375 M 24 "" esv32966 7 147510944 147513905 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101578,essv101525,essv98759,essv101104,essv101259,essv100633,essv101089,essv101034,essv95204,essv95207,essv94034,essv94005,essv96915,essv97045,essv95412,essv93166,essv93017,essv95318,essv95259,essv97388,essv95778,essv95798,essv98963,essv99041,essv92863,essv92887,essv92726,essv93653,essv93778,essv96692,essv96724,essv97179,essv97187,essv99808,essv99842,essv93333,essv93385,essv92638,essv92585,essv97975,essv98014,essv96545,essv96551,essv97666,essv100319,essv99427,essv98473,essv98440,essv96411,essv96299,essv94189 M 51 0 30 "" 21603,21606,21618,21656,21693,21721,21802,21817,21847,21863,21872,21879,21911,21938,21939,21944,21972,22011,22075,22086,22170,22233,22259,22261,22278,22300,22335,22352,22371,22394 nsv527436 7 147557344 147581090 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703876 S 2026 0 1 "" nsv520711 7 147577047 147594151 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697569 S 2026 0 1 "" nsv519189 7 147694202 147718353 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694314 S 2026 0 1 "" nsv526993 7 147744597 147745827 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703367 S 2026 1 0 "" nsv522272 7 147811004 147832243 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695053 S 2026 0 1 "" nsv518186 7 147857132 147860229 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695609 S 2026 0 1 "" nsv528653 7 147899825 147906265 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705287 S 2026 0 1 "" nsv465194 7 147899825 147939817 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541045 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00669 nsv522305 7 147906265 147945845 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695087 S 2026 0 1 "" nsv522985 7 147939351 147939406 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698655 S 2026 0 1 "" nsv831183 7 147944912 148122806 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446792,nssv1446791 M 95 0 2 "" nsv519634 7 148027517 148080653 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696962 S 2026 1 0 "" nsv524408 7 148099150 148111013 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700328 S 2026 0 1 "" nsv528358 7 148099150 148175025 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704943 S 2026 0 1 "" nsv366077 7 148125801 148132822 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384655 M 24 "" nsv518773 7 148323525 148360314 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696224 S 2026 0 1 "" nsv465196 7 148327739 148384927 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541047 S 1557 0 1 "" 1780862101_A nsv6001 7 148401239 148433373 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3593 S 9 0 1 "" NA12878 nsv524496 7 148500640 148501985 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700435 S 2026 1 0 "" nsv469576 7 148817274 149000881 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649689 M 265 0 0 Samples from several populations that are part of the HapMap project. "" nsv831184 7 148862483 149037741 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446793 S 95 1 0 "" dgv2151e1 7 148879238 149394063 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1908,essv43,essv6245,esv708,essv1610 M 271 0 0 "" NA18636,NA18942,NA18976,NA18991 dgv844n27 7 148894007 148922707 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv465203,nsv465204 M 1557 0 2 "" 1782681313_A,HGDP01163 nsv517242 7 148894007 148973862 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv683294,nssv679912,nssv685132,nssv662782,nssv682006,nssv655050,nssv689006,nssv664620,nssv663453,nssv654765,nssv654110,nssv666660,nssv661526,nssv683093,nssv677707,nssv662303,nssv692721 M 2026 0 17 "" nsv521861 7 148896271 149020554 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694635 S 2026 0 1 "" dgv2152e1 7 148984351 149343695 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2380,essv3648,essv6486 M 271 0 0 "" NA18636,NA18976,NA18991 nsv8229 7 148987435 149320211 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16978,nssv19364,nssv16956,nssv18583,nssv16623,nssv15592,nssv15714,nssv20010,nssv16225,nssv19394 M 31 6 4 Samples from several populations that are part of the HapMap project. "" NA07048,NA10863,NA18504,NA18517,NA18942,NA18975,NA18980,NA19144,NA19221 nsv519323 7 148989641 149020554 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv693646,nssv692904,nssv655413,nssv674548 M 2026 0 4 "" dgv845n27 7 148989641 149023027 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv465209,nsv465205,nsv465210,nsv465207,nsv465208 M 1557 5 0 "" HGDP00753,HGDP00817,HGDP00960,HGDP00973,HGDP01102 nsv831185 7 148998753 149157307 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446794 S 95 1 0 "" nsv365614 7 149000683 149000766 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384192 M 24 "" nsv471647 7 149005837 149247375 CNV Gain Sharp et al 2005 15918152 BAC_aCGH,FISH Eichler Segmental Duplication BAC array nssv550533,nssv550528,nssv550527,nssv550534 M 48 2 0 "" NA17015,NA17058 nsv831186 7 149106042 149247375 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446796 S 95 1 0 "" dgv2153e1 7 149106042 149304235 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv7374,essv4520 M 271 0 0 "" NA18623 esv33919 7 149116632 149190232 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100807,essv93703 M 51 2 0 "" 21656,21972 nsv6002 7 149166338 149202860 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3594 S 9 0 1 "" NA12878 nsv442076 7 149232703 149242301 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv6003 7 149295984 149325471 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5031 S 9 0 1 "" NA19129 nsv510120 7 149296792 149302792 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618277 S 4 0 1 "" CHM nsv508490 7 149443716 149488889 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620002 S 4 0 1 "" NA15510 dgv435n21 7 149457943 149474312 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv516052,nsv518774 M 2026 0 58 "" nsv521407 7 149457943 149556238 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698017 S 2026 0 1 "" nsv518150 7 149578339 149578410 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695571 S 2026 0 1 "" nsv437033 7 149666343 149683636 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv466914 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA10855 dgv2154e1 7 149671475 149684632 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv24538,esv1146 M 271 0 0 "" NA11831 nsv438012 7 149671689 149676934 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv469579,nssv469578 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA10855,NA11831 dgv2155e1 7 149689597 149901452 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1530,esv33 M 271 0 0 "" NA18980 nsv442238 7 149723449 149739217 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv831187 7 149763561 149941148 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446797 S 95 0 1 "" nsv522859 7 149914536 149923817 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698514 S 2026 0 1 "" esv2750627 7 149922685 149923543 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv92826 S 51 1 0 "" 21944 nsv519444 7 149924706 149926116 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696857 S 2026 0 1 "" dgv2156e1 7 149976469 150101345 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv17547,esv488 M 271 0 0 "" NA12762 esv32879 7 149990797 150011343 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv95641 S 51 0 1 "" 21841 nsv523701 7 149996047 149997970 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699509 S 2026 0 1 "" nsv8230 7 150003334 150011915 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17348 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA12155 nsv442077 7 150003604 150010085 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv465213 7 150043936 150104858 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541056 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01027 nsv8231 7 150109015 150118662 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18613 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18504 nsv526410 7 150152460 150212954 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702710 S 2026 0 1 "" nsv365674 7 150162112 150162164 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384252 M 24 "" nsv524928 7 150169346 150204447 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700941 S 2026 1 0 "" nsv831188 7 150172852 150350523 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446802,nssv1446799,nssv1446801,nssv1446800,nssv1446803,nssv1446798 M 95 0 6 "" nsv517508 7 150200519 150212954 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv686321,nssv652227 M 2026 0 2 "" nsv465215 7 150200519 150262735 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541057 S 1557 0 1 "" 1780862416_A nsv6004 7 150202654 150233593 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv695 S 9 1 0 "" NA19240 nsv527369 7 150259840 150262735 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703801 S 2026 0 1 "" dgv436n21 7 150259840 150270561 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv523930,nsv528732 M 2026 0 2 "" nsv465216 7 150389467 150429443 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541058 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01283 nsv509225 7 150432180 150493456 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619501 S 4 1 0 "" NA10860 nsv6005 7 150522577 150531582 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3595 S 9 1 0 "" NA12878 nsv6006 7 150566665 150607595 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8446,nssv3596 M 9 2 0 "" NA12156,NA12878 nsv831189 7 150586755 150756902 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446804 S 95 1 0 "" nsv818570 7 150590313 150603900 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417632 S 112 1 0 "" NA18987 nsv6007 7 150661856 150679071 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5032 S 9 1 0 "" NA19129 nsv831190 7 150709360 150875049 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446805 S 95 1 0 "" nsv465218 7 150816153 150833901 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541060 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00655 nsv465219 7 150824845 150843466 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541061 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00551 nsv520072 7 150825179 150835747 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694077 S 2026 0 1 "" nsv465220 7 150942738 150950930 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541062 S 1557 0 1 "" 1780854465_A nsv465221 7 150948385 150989441 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541063 S 1557 0 1 "" 1780862019_A nsv366572 7 150955742 150955742 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv385150 M 24 "" dgv437n21 7 150958579 150970933 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv522866,nsv520452 M 2026 0 2 "" nsv465222 7 150978965 151004520 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541064 S 1557 0 1 "" NINDS_50 nsv365974 7 150989688 150990127 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384552 M 24 "" nsv366635 7 150992142 150996261 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv385213 M 24 "" nsv525776 7 151030364 151037151 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701949 S 2026 0 1 "" nsv523467 7 151134680 151136021 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699226 S 2026 0 1 "" nsv831191 7 151211236 151395090 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446807 S 95 1 0 "" nsv522613 7 151280613 151282135 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv706008 S 2026 0 1 "" nsv8232 7 151350573 151449865 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19454 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18517 nsv465225 7 151465272 151507806 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541065 S 1557 0 1 "" NINDS_7 nsv517255 7 151472958 151560570 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705184,nssv682686,nssv655125,nssv692905,nssv662417,nssv687644,nssv692789,nssv658355,nssv673658,nssv669571,nssv678607,nssv664571,nssv667435,nssv669613,nssv682213,nssv693647,nssv654127,nssv670972,nssv679630,nssv663550 M 2026 16 4 "" nsv522183 7 151616603 151629769 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694956 S 2026 0 1 "" nsv516157 7 151627443 151629769 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv684284,nssv658135,nssv680757,nssv663293,nssv668744,nssv682073,nssv666529,nssv669983 M 2026 0 8 "" nsv365318 7 151658143 151658143 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv383896 M 24 "" nsv526884 7 151665268 151668969 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703242 S 2026 1 0 "" nsv831193 7 151791192 152030326 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446808 S 95 0 1 "" nsv524701 7 151820810 151829413 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700684 S 2026 1 0 "" nsv365657 7 151857062 151857377 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384235 M 24 "" nsv508491 7 151996263 152025880 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622589 S 4 0 1 "" NA18994 nsv6008 7 152000918 152034905 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv697,nssv1696 M 9 0 2 "" NA18555,NA19240 dgv846n27 7 152033500 152045380 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv465230,nsv465229 M 1557 0 2 "" HGDP01288,HGDP01295 nsv527668 7 152041926 152041990 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704143 S 2026 1 0 "" nsv520317 7 152149866 152151559 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697345 S 2026 1 0 "" nsv6009 7 152196997 152229638 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5033 S 9 1 0 "" NA19129 nsv831194 7 152200048 152401585 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446809 S 95 1 0 "" nsv6011 7 152207616 152252770 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8447 S 9 0 1 "" NA12156 nsv6012 7 152272434 152294643 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3597 S 9 1 0 "" NA12878 dgv2157e1 7 152281712 152287772 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv9858,esv973 M 271 0 0 "" NA19144 nsv8233 7 152288338 152292451 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15139,nssv16046 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA18572,NA19007 nsv516950 7 152348218 152349872 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv653491,nssv686322 M 2026 0 2 "" dgv2158e1 7 152438821 152736427 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv636,essv13013 M 271 0 0 "" NA18859 nsv8234 7 152499072 152503155 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16234 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA10839 nsv366965 7 152502159 152502209 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv385543 M 24 "" nsv6013 7 152518695 152567129 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3598,nssv8448 M 9 2 0 "" NA12156,NA12878 dgv2159e1 7 152566427 152736427 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv14989,essv16801 M 271 0 0 "" NA18870,NA18872 nsv8235 7 152575870 152577747 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16567 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA11830 nsv437582 7 152582426 152613898 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467463 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18872 dgv2160e1 7 152584598 152662168 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv14817,essv13122,essv13402 M 271 0 0 "" NA18859,NA18870,NA18872 esv34925 7 152585000 152621728 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6979914,essv6986969,essv6979913,essv6990424 M 771 1 0 "" NA18859 nsv442078 7 152586769 152632014 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv510121 7 152620539 152626539 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622150,nssv624053 M 4 0 2 "" NA10860,NA18994 nsv6014 7 152629805 152664770 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv698 S 9 1 0 "" NA19240 esv2422311 7 152655925 153164158 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161271 S 181 1 0 "" ND01666 nsv524774 7 152669393 153145033 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700765 S 2026 1 0 "" nsv522069 7 152748664 152996597 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694841 S 2026 1 0 "" nsv520959 7 152775987 152778379 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697709 S 2026 0 1 "" nsv528882 7 152775987 152784050 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705562 S 2026 0 1 "" dgv2161e1 7 152831155 153249486 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2400,essv6222,esv747,essv1838,essv19,essv1617,essv7403 M 271 0 0 "" NA18623,NA18636,NA18942,NA18976,NA18991 dgv2162e1 7 152891524 153098241 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv3659,essv4507,essv6482,essv1707 M 271 0 0 "" NA18623,NA18636,NA18968,NA18991 dgv2163e1 7 152891524 153195879 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv107,essv1977 M 271 0 0 "" NA18942,NA18968 dgv238e55 7 152899254 153166000 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv34234,esv34787 M 771 2 0 "" NA18623,NA18968 nsv8237 7 152915745 153246494 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20070,nssv16653,nssv19484,nssv16986,nssv16255,nssv20040,nssv15622,nssv16285,nssv15744,nssv18402,nssv18643 M 31 4 5 Samples from several populations that are part of the HapMap project. "" NA07048,NA10863,NA18502,NA18504,NA18517,NA18942,NA18975,NA18980,NA19221 nsv469536 7 152918298 153070917 CNV Gain Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649645 M 265 5 0 Samples from several populations that are part of the HapMap project. "" nsv471648 7 152918299 153195879 CNV Gain+Loss Sharp et al 2005 15918152 BAC_aCGH,FISH Eichler Segmental Duplication BAC array nssv548948,nssv550236,nssv548947,nssv550238,nssv550237 M 48 2 1 "" NA10492,NA17015,NA17058 dgv847n27 7 152925592 153091693 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv465232,nsv465235,nsv465234,nsv465233 M 1557 4 0 "" HGDP00749,HGDP00753,HGDP00960,HGDP00973 nsv465231 7 152925592 153091693 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541069 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01271 nsv527276 7 152925592 153145033 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703686 S 2026 1 0 "" nsv442079 7 152937625 153106266 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv818571 7 152959823 153091693 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417533 S 112 1 0 "" NA18968 esv32553 7 152961768 152963365 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99103,essv98030,essv99468 M 51 3 0 "" 21938,22259,22335 dgv239e55 7 152962526 153109098 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv34730,esv34682,esv35042,esv35143 M 771 4 0 "" NA18636,NA18942,NA18976,NA18991 nsv469546 7 153119433 153321448 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649656 M 265 0 0 Samples from several populations that are part of the HapMap project. "" nsv366534 7 153124989 153124989 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv385112 M 24 "" nsv510122 7 153128453 153134453 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621327,nssv624054 M 4 0 2 "" NA15510,NA18994 nsv365901 7 153258416 153258509 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384479 M 24 "" nsv465236 7 153302313 153360502 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541074 S 1557 0 1 "" 1780854295_A nsv526720 7 153302846 153384199 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703060 S 2026 1 0 "" nsv527203 7 153326183 153350493 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703603 S 2026 0 1 "" nsv518759 7 153401752 153403593 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696209 S 2026 0 1 "" nsv465238 7 153411529 153517283 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541075 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01021 nsv831195 7 153441322 153586968 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446810 S 95 1 0 "" nsv366921 7 153578389 153578476 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv385499 M 24 "" nsv6015 7 153816348 153864881 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9913,nssv5034,nssv1697,nssv6182,nssv699 M 9 0 5 "" NA12156,NA18507,NA18555,NA19129,NA19240 nsv442256 7 153830819 153838481 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv366340 7 153883769 153883769 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384918 M 24 "" nsv366762 7 153885520 153885597 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv385340 M 24 "" nsv366906 7 153891434 153892048 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv385484 M 24 "" nsv366238 7 153892897 153892984 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384816 M 24 "" nsv6016 7 153915516 153949645 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8449 S 9 1 0 "" NA12156 nsv509226 7 153927926 154014861 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623520 S 4 1 0 "" NA18994 nsv507428 7 153981698 153987698 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620398 S 4 1 0 "" NA15510 nsv523054 7 154044235 154045465 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698737 S 2026 0 1 "" nsv365937 7 154047085 154047173 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384515 M 24 "" nsv517537 7 154090250 154143429 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv658517,nssv693842,nssv683656,nssv692722,nssv653345,nssv694057,nssv665138,nssv654300,nssv684892,nssv652295,nssv675122,nssv674425,nssv661617 M 2026 0 13 "" dgv848n27 7 154110294 154131262 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv465241,nsv465240 M 1557 0 2 "" HGDP01163,NINDS_66 nsv8238 7 154133205 154135783 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16683 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA07048 nsv366608 7 154311562 154311732 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv385186 M 24 "" nsv8239 7 154313297 154317760 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16713 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA07048 dgv2164e1 7 154322472 154327193 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv974,essv14042 M 271 0 0 "" NA18862 nsv442080 7 154322647 154327189 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv8240 7 154325486 154330142 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15370 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA12802 nsv515561 7 154349129 154352499 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv659951,nssv664793,nssv663908,nssv692525,nssv693021,nssv661727 M 2026 0 6 "" nsv366387 7 154353442 154353617 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384965 M 24 "" nsv365470 7 154369676 154369995 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384048 M 24 "" nsv437583 7 154396352 154410603 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467464 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18500 nsv520815 7 154400911 154403027 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv688180,nssv675741 M 2026 0 2 "" nsv465243 7 154404182 154416522 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541079 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01044 nsv465244 7 154410572 154416522 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541080 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01053 nsv526885 7 154425268 154427052 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703243 S 2026 1 0 "" nsv519304 7 154495645 154516382 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv655251,nssv685888,nssv689636,nssv697298 M 2026 0 4 "" nsv523176 7 154675020 154681802 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698889 S 2026 0 1 "" nsv465245 7 154681802 154713119 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541081 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00788 nsv517243 7 154720892 154722060 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv689406,nssv654111,nssv678520,nssv675777 M 2026 0 4 "" nsv831196 7 154729921 154901700 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446811 S 95 1 0 "" nsv520626 7 154746368 154757370 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv673323,nssv697992,nssv691888 M 2026 0 3 "" nsv6017 7 154767345 154799157 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10588 S 9 1 0 "" NA18956 nsv366007 7 154774742 154774805 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384585 M 24 "" nsv365283 7 155003332 155008486 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv383861 M 24 "" nsv509227 7 155045200 155115598 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619502 S 4 1 0 "" NA10860 nsv509228 7 155148252 155194374 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618069,nssv623521,nssv619503,nssv620892 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv366255 7 155151973 155152026 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384833 M 24 "" nsv6018 7 155164573 155196331 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8450,nssv3599 M 9 2 0 "" NA12156,NA12878 nsv518485 7 155168976 155172125 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695924 S 2026 0 1 "" nsv437584 7 155181208 155214557 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467465 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18914 nsv510971 7 155194374 155258994 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624320 S 4 0 0 "" NA18994 nsv508492 7 155235435 155260058 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620003 S 4 0 1 "" NA15510 nsv507429 7 155237378 155243378 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621897,nssv617754 M 4 2 0 "" CHM,NA10860 nsv465246 7 155333537 155364164 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541082 S 1557 0 1 "" NINDS_61 nsv465247 7 155355597 155383944 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541083 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00684 nsv366031 7 155440270 155440270 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384609 M 24 "" nsv831197 7 155514709 155739542 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446812 S 95 1 0 "" nsv525273 7 155561647 155612639 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701374 S 2026 1 0 "" dgv2165e1 7 155658864 155925343 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv21754,essv20938,esv727,essv19909,esv604,essv20587 M 271 0 0 "" NA07056,NA12239,NA12801,NA12813 nsv465248 7 155730581 155738604 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541084 S 1557 0 1 "" 1780846322_A dgv2166e1 7 155764762 155819766 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv25028,essv23745,essv24185 M 271 0 0 "" NA07056,NA12801,NA12813 nsv365771 7 155774678 155774743 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384349 M 24 "" nsv442081 7 155798085 155810424 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" essv22713 7 155798087 155819766 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12239 nsv517859 7 155824573 155824796 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695263 S 2026 0 1 "" nsv6019 7 155869605 155894611 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3601 S 9 0 1 "" NA12878 nsv8241 7 155885314 155894331 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15400,nssv17259,nssv16486,nssv17378,nssv15652 M 31 0 5 Samples from several populations that are part of the HapMap project. "" NA12155,NA12740,NA12802,NA18552,NA18942 nsv366456 7 155889674 155889884 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv385034 M 24 "" nsv442282 7 155891266 155893655 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv831198 7 155922117 156121832 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446813 S 95 0 1 "" nsv6020 7 155949628 155980157 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5035 S 9 1 0 "" NA19129 nsv525099 7 155963587 155969096 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701158 S 2026 1 0 "" nsv465249 7 156236181 156315447 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541085 S 1557 0 1 "" 1780862444_A nsv6022 7 156280715 156314293 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5037 S 9 1 0 "" NA19129 esv32984 7 156579745 156590960 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98732 S 51 1 0 "" 21606 nsv518702 7 156610196 156622002 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696152 S 2026 0 1 "" nsv818572 7 156610196 156622002 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416850 S 112 0 1 "" NA12043 nsv465251 7 156616226 156622002 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541087 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00638 nsv517521 7 156616226 156622002 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv685932,nssv670700,nssv680235,nssv682426,nssv685407,nssv687678,nssv678382,nssv652262,nssv658103,nssv693711,nssv659149,nssv663054,nssv682949,nssv677991 M 2026 0 14 "" esv32861 7 156618082 156621369 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98553 S 51 0 1 "" 22085 nsv366429 7 156711088 156711088 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv385007 M 24 "" nsv366008 7 156722759 156722818 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384586 M 24 "" nsv366618 7 156734161 156734237 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv385196 M 24 "" nsv509229 7 156751512 156828412 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619504 S 4 1 0 "" NA10860 nsv366769 7 156776042 156776042 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv385347 M 24 "" nsv8242 7 156785179 156848025 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15804,nssv16315 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18975,NA18980 nsv507430 7 156801236 156807236 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617755 S 4 1 0 "" CHM nsv442286 7 156837843 156850316 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv2167e1 7 156849831 157112954 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1727,esv334,esv47 M 271 0 0 "" NA18997 nsv365287 7 156887522 156887633 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv383865 M 24 "" nsv8243 7 156938932 156943373 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18801,nssv16773,nssv16605,nssv15682,nssv15460,nssv16516,nssv16190,nssv16076,nssv16172 M 31 5 4 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA12802,NA18537,NA18552,NA18853,NA18860,NA18942,NA19007 esv33068 7 156948248 156950433 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv94439,essv95939,essv95018 M 51 3 0 "" 21808,22127,22231 esv2752150 7 156952000 157428000 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6987081,essv6981908,essv6981907,essv6981906,essv6981905 M 771 1 0 "" BEC_500 nsv523513 7 156955409 156961362 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699286 S 2026 0 1 "" esv2422331 7 156955737 157353404 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161425 S 181 1 0 "" ND01580 nsv8244 7 156975812 156979033 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18673,nssv16202,nssv16220,nssv19514,nssv17008,nssv15834,nssv14951,nssv16848,nssv15545,nssv17521,nssv16067,nssv16803,nssv17016,nssv17289,nssv17129,nssv16546,nssv18831,nssv17438 M 31 16 2 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10847,NA10863,NA12155,NA12740,NA12872,NA18504,NA18517,NA18552,NA18563,NA18564,NA18853,NA18860,NA18975,NA19144,NA19173,NA19240 nsv509230 7 156979743 157078478 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619506,nssv620893,nssv619505 M 4 2 0 "" NA10860,NA15510 nsv8245 7 156986734 156990244 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18657 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19132 essv14331 7 156989700 157112954 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19194 esv33838 7 156993620 157014041 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98743 S 51 1 0 "" 21606 nsv365377 7 157002939 157003487 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv383955 M 24 "" nsv366775 7 157008688 157008747 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv385353 M 24 "" nsv6023 7 157012715 157047727 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3602 S 9 1 0 "" NA12878 nsv8246 7 157016604 157018678 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15169,nssv15712,nssv16345,nssv17046 M 31 4 0 Samples from several populations that are part of the HapMap project. "" NA10863,NA18572,NA18942,NA18980 nsv8248 7 157022471 157028409 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16127,nssv16136,nssv15575,nssv15742,nssv20130,nssv15490,nssv17468,nssv17551,nssv17159,nssv18703,nssv15864 M 31 11 0 Samples from several populations that are part of the HapMap project. "" NA10847,NA12155,NA12802,NA18504,NA18563,NA18942,NA18975,NA19007,NA19173,NA19221,NA19240 nsv366707 7 157023812 157023939 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv385285 M 24 "" nsv365867 7 157032603 157032655 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384445 M 24 "" nsv366306 7 157040189 157040311 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384884 M 24 "" nsv522408 7 157046860 157050313 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695190 S 2026 0 1 "" nsv521980 7 157049314 157050313 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694747 S 2026 0 1 "" nsv509231 7 157097680 157200931 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619507 S 4 1 0 "" NA10860 nsv8249 7 157097757 157115720 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18462 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18502 nsv465252 7 157101772 157158172 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541088 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01339 nsv831199 7 157105012 157315334 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446814 S 95 1 0 "" nsv518635 7 157105291 157124527 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696084 S 2026 0 1 "" dgv849n27 7 157222522 157302148 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv465254,nsv465253,nsv465256,nsv465257,nsv465255 M 1557 5 0 "" 1780862480_A,HGDP00600,HGDP00644,HGDP00668,HGDP00670 nsv507431 7 157228503 157234503 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617756,nssv620399 M 4 2 0 "" CHM,NA15510 esv2752151 7 157232000 157334736 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6987235,essv6985364,essv6985365 M 771 1 0 "" SPC_153 nsv365835 7 157233289 157233561 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384413 M 24 "" nsv519942 7 157233790 157302148 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698180,nssv686042,nssv659580 M 2026 2 1 "" nsv509232 7 157344065 157415391 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619508 S 4 1 0 "" NA10860 nsv6024 7 157376109 157395450 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1698 S 9 1 0 "" NA18555 nsv510972 7 157415391 157506044 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618659 S 4 0 0 "" CHM nsv831200 7 157422158 157552466 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446815 S 95 0 1 "" nsv509233 7 157428389 157506044 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619509,nssv620894,nssv623522 M 4 3 0 "" NA10860,NA15510,NA18994 nsv6025 7 157442003 157446689 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6183 S 9 1 0 "" NA12156 nsv365303 7 157451257 157451392 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv383881 M 24 "" nsv6026 7 157502743 157532882 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8451 S 9 0 1 "" NA12156 nsv366062 7 157558180 157558180 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384640 M 24 "" nsv831201 7 157575793 157760598 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446816 S 95 0 1 "" nsv6027 7 157603023 157640293 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9914 S 9 0 1 "" NA18507 nsv509234 7 157605961 157780097 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619510 S 4 1 0 "" NA10860 nsv442294 7 157617027 157631641 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" esv33849 7 157618017 157677340 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98929,essv100817 M 51 2 0 "" 21606,21656 nsv366744 7 157626353 157626909 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv385322 M 24 "" nsv366337 7 157633066 157633324 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384915 M 24 "" nsv520895 7 157654735 157678998 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697675 S 2026 0 1 "" nsv366114 7 157717321 157717770 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384692 M 24 "" nsv366641 7 157717831 157718080 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv385219 M 24 "" nsv509236 7 157808498 157822377 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619511 S 4 1 0 "" NA10860 nsv510974 7 157831396 157921819 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618660 S 4 0 0 "" CHM nsv509237 7 157874169 157921819 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620895,nssv623523,nssv619512 M 4 3 0 "" NA10860,NA15510,NA18994 nsv438013 7 157937662 157939751 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv469580,nssv469581,nssv469582 M 269 0 3 Samples from several populations that are part of the HapMap project. "" NA18566,NA18593,NA18947 nsv507432 7 157950600 157956600 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623025,nssv620402 M 4 2 0 "" NA15510,NA18994 nsv518319 7 158076616 158143344 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695750 S 2026 1 0 "" nsv366535 7 158089139 158089188 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv385113 M 24 "" nsv366251 7 158096534 158096603 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384829 M 24 "" nsv527634 7 158125505 158165463 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704103 S 2026 1 0 "" dgv438n21 7 158125505 158258927 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv522139,nsv523055 M 2026 2 0 "" nsv509238 7 158161045 158234650 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620896,nssv623524,nssv619513 M 4 3 0 "" NA10860,NA15510,NA18994 nsv519749 7 158168051 158549256 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697030 S 2026 0 1 "" nsv465262 7 158183628 158419661 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541095 S 1557 1 0 "" 1780862379_A nsv18 7 158193346 158221229 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv18 S 1 1 0 "" NA15510 nsv6028 7 158193346 158221229 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv11167 S 9 1 0 "" NA15510 nsv8250 7 158206344 158210428 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16250,nssv15199,nssv18861,nssv16878,nssv16576,nssv19043,nssv15520,nssv16157,nssv17581,nssv17189,nssv15894,nssv16232,nssv15605,nssv18687,nssv16597 M 31 15 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA10847,NA11830,NA12802,NA18552,NA18563,NA18564,NA18572,NA18853,NA18860,NA18972,NA18975,NA19132,NA19173,NA19240 nsv526756 7 158210355 158618962 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703106 S 2026 1 0 "" nsv366807 7 158250179 158250179 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv385385 M 24 "" nsv6029 7 158282153 158291851 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1699 S 9 1 0 "" NA18555 nsv366254 7 158310473 158310566 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384832 M 24 "" nsv831202 7 158413174 158594317 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446818 S 95 1 0 "" nsv507433 7 158448121 158454121 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621898 S 4 1 0 "" NA10860 nsv366083 7 158454352 158454446 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384661 M 24 "" nsv509239 7 158480254 158523069 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619514,nssv620897 M 4 2 0 "" NA10860,NA15510 nsv366691 7 158495492 158495631 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv385269 M 24 "" nsv365655 7 158501300 158501381 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv384233 M 24 "" nsv519357 7 158549256 158618962 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696809 S 2026 0 1 "" nsv437034 7 158614428 158624663 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv466915 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA10851 nsv8251 7 158616165 158627081 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19544,nssv16833,nssv15550,nssv15635,nssv17106,nssv16187,nssv16280,nssv16262,nssv18733,nssv16627,nssv16908,nssv15229,nssv16166,nssv16635,nssv20160,nssv17319,nssv16606,nssv18891,nssv17498,nssv17219,nssv18717,nssv18492,nssv16264,nssv15924,nssv17611,nssv15802,nssv14981,nssv16375,nssv19073,nssv17038 M 31 30 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10847,NA10863,NA11830,NA12155,NA12740,NA12802,NA12872,NA18502,NA18504,NA18517,NA18537,NA18552,NA18563,NA18564,NA18572,NA18853,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19144,NA19173,NA19221,NA19240 nsv442082 7 158617117 158618730 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" esv32741 7 158617233 158628005 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv94370,essv94217 M 51 0 2 "" 21808,22394 nsv516608 7 158617919 158618962 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv660392,nssv653208 M 2026 0 2 "" nsv471521 8 2 160543 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv547895,nssv547894,nssv547896 M 3 "" nsv8252 8 1752 12850 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16217 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18563 nsv8253 8 10326 126606 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15259,nssv16687,nssv17279,nssv15665,nssv18921,nssv17136,nssv15011,nssv17249,nssv16294,nssv16665,nssv15580,nssv16657 M 31 1 9 Samples from several populations that are part of the HapMap project. "" NA10839,NA10847,NA10863,NA11830,NA12802,NA12872,NA18537,NA18572,NA18860,NA19173 nsv831205 8 30472 188712 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446820,nssv1446819,nssv1446822,nssv1446821,nssv1446823 M 95 0 5 "" dgv2168e1 8 59932 223973 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv16152,essv9463,essv22989,essv18204,essv12831,essv10730,essv17894,essv19439,essv14532,essv9344,essv10646,essv8920,essv19258,essv19949,essv15014,essv16761,essv16046,essv15538 M 271 0 0 "" NA07357,NA10838,NA11840,NA12003,NA12057,NA12813,NA18501,NA18505,NA18523,NA18853,NA18855,NA18870,NA18872,NA19100,NA19120,NA19200,NA19202,NA19208 dgv2169e1 8 59932 484890 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv10954,esv580,esv588,essv11079 M 271 0 0 "" NA19209,NA19211 nsv6034 8 151699 186841 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv705 S 9 1 0 "" NA19240 nsv520036 8 154984 199152 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697189 S 2026 1 0 "" nsv527387 8 154984 250716 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703822 S 2026 1 0 "" nsv465263 8 154984 403288 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541096 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01414 nsv524542 8 154984 523699 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700492 S 2026 1 0 "" nsv465264 8 154984 624607 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541097 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00602 nsv831206 8 156973 319315 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446824 S 95 0 1 "" nsv8254 8 169851 176505 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15289 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18572 dgv2170e1 8 177639 405401 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv10608,essv7923 M 271 0 0 "" NA19209,NA19211 dgv240e55 8 180568 400640 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv34734,esv34882 M 771 2 0 "" NA19209,NA19211 nsv396736 8 206485 206485 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415314 M 24 "" nsv6035 8 212185 257141 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8456 S 9 0 1 "" NA12156 essv9303 8 227333 250511 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18852 nsv8255 8 233786 266446 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15319,nssv20190 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA18572,NA19221 nsv522050 8 242662 277831 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694821 S 2026 0 1 "" nsv528684 8 270645 294569 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705326 S 2026 1 0 "" essv6400 8 304160 484890 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18572 nsv8256 8 313588 317286 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15041,nssv17349,nssv16938,nssv15349 M 31 4 0 Samples from several populations that are part of the HapMap project. "" NA12740,NA12872,NA18564,NA18572 nsv527388 8 322993 400640 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703823 S 2026 1 0 "" nsv471483 8 329001 389952 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548402,nssv548403,nssv548404 M 3 "" nsv8257 8 345046 346848 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16292,nssv16695,nssv16863,nssv17379,nssv16968,nssv19574 M 31 6 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA12740,NA18517,NA18537,NA18564 nsv8259 8 366066 380414 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15379 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18572 nsv523968 8 411858 415541 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699820 S 2026 0 1 "" nsv520480 8 416479 420397 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv681882,nssv706083,nssv671760 M 2026 1 2 "" nsv519615 8 427030 440369 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696952 S 2026 0 1 "" nsv465265 8 427030 523699 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541098 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00169 nsv510975 8 494340 595783 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621603 S 4 0 0 "" NA15510 nsv507434 8 505000 511000 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623026,nssv617757 M 4 2 0 "" CHM,NA18994 nsv438014 8 534755 588391 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv469602,nssv469600,nssv469586,nssv469593,nssv469599,nssv469595,nssv469603,nssv469610,nssv469588,nssv469606,nssv469612,nssv469597,nssv469587,nssv469611,nssv469592,nssv469604,nssv469608,nssv469591,nssv469594,nssv469590,nssv469583,nssv469589,nssv469598,nssv469601,nssv469605,nssv469609,nssv469584 M 269 0 26 Samples from several populations that are part of the HapMap project. "" NA18547,NA18550,NA18576,NA18593,NA18594,NA18608,NA18609,NA18611,NA18612,NA18622,NA18632,NA18635,NA18949,NA18953,NA18956,NA18960,NA18961,NA18966,NA18972,NA18974,NA18975,NA18976,NA18987,NA18995,NA18998,NA19000 nsv527594 8 539870 580861 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704055 S 2026 0 1 "" nsv508494 8 563664 595783 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617357 S 4 0 1 "" CHM nsv6036 8 577296 606629 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3606,nssv10593,nssv706,nssv6191,nssv1704 M 9 0 5 "" NA12156,NA12878,NA18555,NA18956,NA19240 nsv465267 8 580861 597779 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541099 S 1557 1 0 "" NINDS_90 esv33320 8 582266 584720 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99888 S 51 1 0 "" 22086 nsv397750 8 584401 589414 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416328 M 24 "" esv32600 8 584720 590672 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv94458,essv97236,essv99772,essv98032,essv100619,essv99548 M 51 5 1 "" 21808,22075,22086,22259,22298,22335 dgv30n14 8 584761 588391 CNV Loss Cooper et al 2008 18776910 SNP_array nsv433490,nsv433487,nsv433485,nsv433486,nsv433488 M 9 0 5 "" NA12156,NA12878,NA15510,NA18956,NA19240 nsv397108 8 599447 599906 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415686 M 24 "" nsv397438 8 615762 615817 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416016 M 24 "" nsv6037 8 629524 670925 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8457 S 9 0 1 "" NA12156 nsv509240 8 731568 767376 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618070 S 4 1 0 "" CHM nsv6038 8 732400 766133 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5043 S 9 1 0 "" NA19129 nsv521496 8 755944 769714 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698110 S 2026 1 0 "" nsv465269 8 755944 783149 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541100 S 1557 0 1 "" 1780854479_A nsv465270 8 778912 839254 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541101 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00759 nsv520448 8 812991 813711 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv692184,nssv677633,nssv699957,nssv674151,nssv671580 M 2026 1 4 "" nsv509241 8 831671 934730 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620898,nssv619515 M 4 2 0 "" NA10860,NA15510 nsv6039 8 904892 939093 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10594,nssv5044,nssv3607 M 9 3 0 "" NA12878,NA18956,NA19129 nsv6040 8 941482 985145 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv707 S 9 0 1 "" NA19240 nsv396680 8 971391 971472 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415258 M 24 "" nsv396847 8 1011318 1011380 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415425 M 24 "" nsv6041 8 1021055 1055449 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv708 S 9 1 0 "" NA19240 nsv465271 8 1024671 1070157 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541102 S 1557 0 1 "" 1780862444_A nsv6042 8 1037503 1073930 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8458 S 9 0 1 "" NA12156 nsv398246 8 1082354 1082354 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416824 M 24 "" nsv509242 8 1097354 1168282 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623525 S 4 1 0 "" NA18994 nsv818573 8 1098321 1105146 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415903 S 112 0 1 "" NA11994 nsv396497 8 1134973 1135022 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415075 M 24 "" nsv510123 8 1145916 1151916 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618278 S 4 0 1 "" CHM nsv396168 8 1175057 1175232 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv414746 M 24 "" nsv509243 8 1211433 1242747 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619516 S 4 1 0 "" NA10860 nsv526274 8 1211691 1228053 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702551 S 2026 0 1 "" nsv398113 8 1213416 1213416 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416691 M 24 "" nsv465273 8 1216556 1307131 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541104 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00600 nsv398404 8 1224442 1224442 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416982 M 24 "" nsv526013 8 1277082 1277468 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702241 S 2026 0 1 "" nsv519142 8 1279895 1307131 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696620 S 2026 0 1 "" nsv398100 8 1280787 1280787 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416678 M 24 "" nsv6044 8 1309860 1360582 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5046,nssv9739,nssv11174,nssv10595,nssv9453,nssv6192,nssv1707,nssv709,nssv3608 M 9 0 9 "" NA12156,NA12878,NA15510,NA18507,NA18517,NA18555,NA18956,NA19129,NA19240 nsv397715 8 1312316 1312379 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416293 M 24 "" nsv8260 8 1325775 1344224 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15071,nssv15409,nssv18522,nssv16324,nssv16893,nssv17439,nssv17641,nssv16310,nssv15954,nssv16998,nssv15832,nssv19604,nssv16725,nssv16405,nssv16196,nssv16636,nssv17309,nssv17528,nssv17068,nssv16247,nssv19133,nssv16322,nssv15695,nssv18793 M 31 0 24 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10847,NA12155,NA12740,NA12872,NA18502,NA18504,NA18517,NA18537,NA18552,NA18563,NA18564,NA18572,NA18853,NA18942,NA18972,NA18975,NA18980,NA19007,NA19144,NA19173,NA19240 nsv19 8 1327422 1358228 CNV Loss Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv19 S 1 0 1 "" NA15510 nsv442305 8 1346118 1348109 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv396792 8 1354711 1354831 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415370 M 24 "" nsv469881 8 1362044 1549356 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649902 M 265 0 20 Samples from several populations that are part of the HapMap project. "" nsv8261 8 1370378 1374443 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17339 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19173 nsv396133 8 1385376 1385857 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv414711 M 24 "" nsv396430 8 1385563 1385661 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415008 M 24 "" nsv396594 8 1392305 1392305 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415172 M 24 "" nsv8262 8 1393955 1413592 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18823,nssv19634,nssv19163,nssv16277,nssv16666,nssv15862,nssv15984,nssv15725 M 31 0 8 Samples from several populations that are part of the HapMap project. "" NA10847,NA18504,NA18517,NA18552,NA18563,NA18942,NA18972,NA18975 nsv397478 8 1396841 1397170 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416056 M 24 "" nsv396086 8 1426905 1426905 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv414664 M 24 "" nsv396012 8 1456646 1457106 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv414590 M 24 "" nsv397705 8 1457541 1457598 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416283 M 24 "" nsv6045 8 1478256 1512828 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2778 S 9 1 0 "" NA18555 nsv517779 8 1581714 1582857 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv675685,nssv659677,nssv653225,nssv667370,nssv684141,nssv689847 M 2026 0 6 "" nsv396525 8 1646285 1646531 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415103 M 24 "" nsv397250 8 1646285 1646901 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415828 M 24 "" nsv465274 8 1672471 1715699 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541105 S 1557 0 1 "" 1780862345_A dgv850n27 8 1684493 1764978 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv465276,nsv465275 M 1557 0 2 "" 1780862414_A,1782681313_A nsv509244 8 1692086 1786277 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620899 S 4 1 0 "" NA15510 nsv465277 8 1734357 1875854 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541108 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01222 nsv519049 8 1743992 1744207 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696520 S 2026 0 1 "" nsv395839 8 1763935 1764164 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv414417 M 24 "" nsv831207 8 1790762 1875731 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446825 S 95 0 1 "" nsv396415 8 1793831 1793831 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv414993 M 24 "" nsv397138 8 1794855 1794937 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415716 M 24 "" nsv6046 8 1803976 1848711 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8459 S 9 0 1 "" NA12156 nsv398112 8 1810398 1810574 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416690 M 24 "" nsv397324 8 1823631 1823689 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415902 M 24 "" nsv397172 8 1827902 1828201 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415750 M 24 "" nsv398111 8 1891093 1891093 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416689 M 24 "" nsv517213 8 1894037 1900541 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv656851,nssv667953,nssv678311,nssv691343,nssv693450,nssv675712,nssv681728,nssv671070,nssv683296,nssv662570,nssv692271,nssv683095,nssv682717,nssv678610,nssv654025,nssv651897,nssv656904,nssv690296,nssv692018,nssv667302 M 2026 0 20 "" nsv524631 8 1895262 1903551 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700594 S 2026 0 1 "" nsv525036 8 1898065 1905759 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701080 S 2026 0 1 "" nsv528662 8 1942219 2003460 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705298 S 2026 0 1 "" dgv439n21 8 1942690 1946743 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv520178,nsv518960 M 2026 0 2 "" nsv465278 8 1942690 1984944 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541109 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00971 esv2422414 8 1972946 2450699 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161508 S 181 1 0 "" ND02645 esv2422491 8 1982590 2020207 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161309 S 181 1 0 "" ND00709 nsv465279 8 1987994 2003460 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541110 S 1557 0 1 "" NINDS_159 nsv398389 8 1990512 1990701 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416967 M 24 "" nsv522301 8 2014561 2111558 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695082 S 2026 1 0 "" nsv397833 8 2021401 2021506 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416411 M 24 "" nsv516842 8 2024688 2036057 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv681810,nssv654384,nssv690730,nssv692197 M 2026 0 4 "" dgv851n27 8 2024688 2036238 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv465280,nsv465281 M 1557 0 2 "" 1782681110_A,NINDS_247 nsv821654 8 2027315 2208228 CNV Gain Sebat_et_al_2004 15273396 ROMA Custom Nimblegen photoprint 85000 probe ROMA oligo array nssv1421200 S 31 1 0 "" nsv516559 8 2042221 2044271 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv669166,nssv660145 M 2026 2 0 "" nsv526104 8 2052499 2084414 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702352 S 2026 0 1 "" nsv397359 8 2055855 2055935 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415937 M 24 "" nsv397311 8 2065452 2065601 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415889 M 24 "" nsv438016 8 2066222 2075642 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv469614,nssv469615,nssv469613 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA12864,NA12872 nsv442317 8 2067801 2069206 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv465282 8 2082848 2092133 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541113 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01086 esv34364 8 2082848 2375383 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6986559,essv6990208,essv6986558,essv6978204,essv6978203 M 771 1 0 "" NA18976 nsv528434 8 2088481 2099921 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705027 S 2026 0 1 "" nsv6047 8 2104655 2154129 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2779,nssv6193,nssv10596,nssv5047 M 9 4 0 "" NA12156,NA18555,NA18956,NA19129 nsv469836 8 2105019 2279635 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649857 M 265 1 2 Samples from several populations that are part of the HapMap project. "" nsv831208 8 2105020 2279635 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446826,nssv1446827,nssv1446829 M 95 0 3 "" dgv2171e1 8 2105020 2312389 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv12259,essv16064,essv9005,essv15543 M 271 0 0 "" NA18501,NA19101,NA19132,NA19137 dgv2172e1 8 2105020 2411266 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2389,esv694,esv601,essv1862 M 271 0 0 "" NA18976 nsv471649 8 2105020 2435332 CNV Gain+Loss Sharp et al 2005 15918152 BAC_aCGH,FISH Eichler Segmental Duplication BAC array nssv549917,nssv549919,nssv549916,nssv549925,nssv549924,nssv549920,nssv549923,nssv549921,nssv549926,nssv549927,nssv549928,nssv549918,nssv550823,nssv549922 M 48 11 2 "" NA10493,NA10967,NA10970,NA10971,NA11323,NA15724,NA17014,NA17015,NA17016,NA17017,NA17020,NA17051,NA17058 nsv8263 8 2108407 2123306 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16340,nssv18552 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18502,NA18853 dgv239n6 8 2109490 2109755 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv398484,nsv397182 M 24 "" nsv528801 8 2111101 2111558 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705475 S 2026 0 1 "" nsv524216 8 2116686 2123169 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700103 S 2026 0 1 "" nsv442083 8 2116952 2120782 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv852n27 8 2118532 2158362 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv465293,nsv465291,nsv465289,nsv465292,nsv465290 M 1557 0 5 "" 1780854206_A,1780854334_A,1780862109_A,1780862520_A,NINDS_89 nsv515930 8 2118532 2584738 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705092,nssv661002,nssv705280,nssv690141,nssv677415,nssv652308,nssv674185,nssv671953,nssv683011,nssv678856,nssv684584,nssv661394,nssv668797,nssv691928,nssv654512,nssv680254,nssv694848,nssv658648,nssv668767,nssv692502,nssv673522,nssv666171,nssv657224,nssv688587,nssv675066,nssv670976,nssv674992,nssv674599,nssv656503,nssv675383,nssv675123,nssv692826,nssv685897,nssv690142,nssv664269,nssv682915,nssv686375,nssv692882,nssv657122,nssv692391,nssv661259,nssv669895,nssv693508,nssv681452,nssv657374,nssv666912,nssv686244,nssv683012,nssv666037,nssv660297,nssv661393,nssv684309,nssv689253,nssv690228,nssv659363,nssv684585,nssv705757,nssv667436,nssv692230,nssv661260,nssv670898,nssv678113,nssv677416,nssv660296,nssv692231,nssv675324,nssv659583,nssv680219,nssv671579,nssv670975,nssv654511,nssv673523,nssv693948,nssv683968,nssv675516,nssv668766,nssv680218,nssv683442,nssv688316,nssv684235,nssv680330,nssv664296,nssv672275,nssv675325,nssv656504,nssv685896,nssv691213,nssv691212,nssv688586,nssv681067,nssv678112,nssv666807,nssv683441,nssv670443,nssv657124,nssv684554 M 2026 43 53 "" dgv853n27 8 2118593 2383995 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv465302,nsv465305,nsv465303 M 1557 3 0 "" HGDP00782,HGDP00811,HGDP01334 nsv509245 8 2121576 2130069 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620900,nssv623526,nssv619517 M 4 3 0 "" NA10860,NA15510,NA18994 nsv465304 8 2123169 2149713 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541124 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01384 nsv465307 8 2128549 2139361 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541127 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00062 dgv854n27 8 2128549 2149713 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv465311,nsv465313,nsv465308,nsv465310,nsv465309,nsv465312,nsv465314 M 1557 0 7 "" HGDP00025,HGDP00230,HGDP00438,HGDP00599,HGDP00612,HGDP00650,HGDP01399 essv3946 8 2129674 2191803 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18970 nsv396854 8 2132601 2132601 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415432 M 24 "" dgv67n64 8 2133500 2145944 CNV Loss Wang_et_al_2007 17921354 SNP_array nsv818574,nsv818575 M 112 0 2 "" NA18558,NA18608 nsv442328 8 2140221 2145353 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" esv2422292 8 2153586 2431221 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161394 S 181 1 0 "" ND00709 nsv509247 8 2154140 2190390 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619518 S 4 1 0 "" NA10860 esv2422319 8 2163275 2553922 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161451 S 181 1 0 "" ND05052 nsv7413 8 2170740 2360544 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv11175,nssv5051,nssv1709,nssv9740,nssv712,nssv6195,nssv9741,nssv710,nssv3610,nssv10597,nssv3609,nssv10598,nssv6194,nssv9454,nssv10599,nssv3612,nssv5050,nssv1708,nssv5049 M 9 0 0 "" NA12156,NA12878,NA15510,NA18507,NA18517,NA18555,NA18956,NA19129,NA19240 nsv6048 8 2171813 2192861 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5048 S 9 1 0 "" NA19129 nsv397014 8 2200870 2200870 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415592 M 24 "" nsv398120 8 2201031 2201031 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416698 M 24 "" nsv517808 8 2202194 2956184 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694167 S 2026 1 0 "" nsv8264 8 2202506 2205942 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17166,nssv16465,nssv15610,nssv17128,nssv17671,nssv19664,nssv18951,nssv16696,nssv18747,nssv16354 M 31 3 7 Samples from several populations that are part of the HapMap project. "" NA10839,NA10863,NA12802,NA18517,NA18552,NA18860,NA18980,NA19132,NA19144,NA19240 nsv469662 8 2215496 2435332 CNV Gain Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649591 M 265 1 0 Samples from several populations that are part of the HapMap project. "" dgv137n17 8 2220166 2283162 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437585,nsv437587,nsv437586 M 60 0 3 "" NA18503,NA18515,NA19173 dgv2173e1 8 2226740 2259919 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv8047,essv19328 M 271 0 0 "" NA12872,NA19103 nsv6049 8 2230773 2257418 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv711 S 9 0 1 "" NA19240 nsv8265 8 2232990 2257526 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16226,nssv17196,nssv16785,nssv17369,nssv16726,nssv18582,nssv15469,nssv18853,nssv16370,nssv16307,nssv15131,nssv18981,nssv19694,nssv17558,nssv16923,nssv19193,nssv18807,nssv16014,nssv16495,nssv20220,nssv15785,nssv17469,nssv17028,nssv15640,nssv16384,nssv15892 M 31 20 6 Samples from several populations that are part of the HapMap project. "" NA07048,NA10839,NA10847,NA10863,NA12155,NA12740,NA12802,NA12872,NA18502,NA18504,NA18517,NA18537,NA18552,NA18563,NA18564,NA18572,NA18853,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19173,NA19221 nsv433395 8 2233782 2275525 CNV Gain Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463276 S 9 1 0 Samples from several populations that are part of the HapMap project. "" NA12878 esv33002 8 2241489 2251040 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv96993,essv95754,essv94538,essv99062,essv100489,essv94291 M 51 0 6 "" 21817,21841,21932,21938,22298,22394 dgv2174e1 8 2241720 2258689 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv10723,essv14007 M 271 0 0 "" NA18508,NA19222 nsv442335 8 2242045 2246765 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv437588 8 2242110 2250519 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467469 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19145 nsv438017 8 2242110 2250519 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv469622,nssv469624,nssv469631,nssv469616,nssv469632,nssv469625,nssv469621,nssv469628,nssv469627,nssv469623,nssv469626,nssv469619,nssv469633,nssv469620,nssv469617 M 269 0 15 Samples from several populations that are part of the HapMap project. "" NA07000,NA07029,NA18500,NA18501,NA18503,NA18504,NA19101,NA19103,NA19127,NA19130,NA19137,NA19172,NA19173,NA19203,NA19209 nsv433491 8 2243942 2249691 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463372 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA19129 nsv433396 8 2254003 2275525 CNV Gain Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463277 S 9 1 0 Samples from several populations that are part of the HapMap project. "" NA19240 nsv397682 8 2259273 2259273 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416260 M 24 "" nsv510976 8 2262004 2365155 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621604,nssv624322,nssv622385,nssv618661 M 4 0 0 "" CHM,NA10860,NA15510,NA18994 nsv20 8 2270843 2278367 OTHER Inversion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv20 S 1 0 0 "" NA15510 nsv465315 8 2277246 2478431 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541135 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00080 dgv855n27 8 2277246 2570171 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv465329,nsv465316,nsv465326,nsv465330,nsv465331,nsv465327 M 1557 6 0 "" 1780854206_A,1780854334_A,1780862109_A,1780862520_A,NINDS_134,NINDS_89 nsv8266 8 2303064 2307299 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15815 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA10847 dgv2175e1 8 2303623 2411266 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2063,essv5584,essv387,essv18099,essv17741,essv21870,essv22922 M 271 0 0 "" NA10831,NA11839,NA11993,NA12760,NA18529,NA18949,NA18971 dgv241e55 8 2310221 2591249 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv2752249,esv2752247,esv2752246,esv2752248,esv2752250 M 771 5 0 "" BEC_11,BEC_665,BEC_668,BEC_705,SPC_113 nsv396764 8 2352049 2352049 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415342 M 24 "" nsv396848 8 2467848 2468094 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415426 M 24 "" nsv396067 8 2467850 2467941 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv414645 M 24 "" nsv520217 8 2583385 2586084 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697288 S 2026 0 1 "" nsv831209 8 2612347 2798932 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446830 S 95 0 1 "" nsv395885 8 2622119 2622266 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv414463 M 24 "" nsv397431 8 2622221 2622221 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416009 M 24 "" nsv398038 8 2622354 2622354 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416616 M 24 "" dgv2176e1 8 2684771 2697799 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv10970,esv1336,esv1272 M 271 0 0 "" NA19092 nsv818576 8 2687326 2696514 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418290 S 112 0 1 "" NA19092 nsv465341 8 2694184 2714722 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541145 S 1557 1 0 "" 1780854123_A nsv397283 8 2727438 2727549 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415861 M 24 "" nsv396579 8 2763667 2764429 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415157 M 24 "" nsv521223 8 2771825 2775515 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697853 S 2026 0 1 "" nsv520737 8 2796904 2812657 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv692906,nssv674863 M 2026 2 0 "" nsv831210 8 2854979 2917329 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446831 S 95 0 1 "" nsv396910 8 2869889 2870112 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415488 M 24 "" nsv515545 8 2877299 2878216 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv674464,nssv668285,nssv692198,nssv656645,nssv663870,nssv681962,nssv691088,nssv671033,nssv688096,nssv679718,nssv671618,nssv693989,nssv668366,nssv678706,nssv660362,nssv667832,nssv673956,nssv654433,nssv679067,nssv674709,nssv691687,nssv680567,nssv674134,nssv668779,nssv682558,nssv664639 M 2026 0 26 "" nsv526570 8 2896758 2898923 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702886 S 2026 1 0 "" nsv398434 8 2921320 2921320 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv417012 M 24 "" nsv397826 8 3028066 3028066 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416404 M 24 "" nsv397290 8 3028313 3028442 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415868 M 24 "" nsv396552 8 3028499 3028628 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415130 M 24 "" nsv397068 8 3035198 3035275 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415646 M 24 "" nsv465343 8 3077146 3089614 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541146 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01416 nsv520856 8 3102572 3115425 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697652 S 2026 0 1 "" nsv525017 8 3156682 3177303 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701056 S 2026 0 1 "" nsv465344 8 3307156 3320535 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541147 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00160 nsv519649 8 3336092 3337007 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696973 S 2026 0 1 "" nsv6050 8 3354276 3386846 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3613 S 9 1 0 "" NA12878 nsv465345 8 3379608 3411256 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541148 S 1557 0 1 "" NINDS_160 nsv525922 8 3408223 3411256 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702126 S 2026 0 1 "" nsv465346 8 3431416 3437725 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541149 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00234 nsv522726 8 3431416 3437725 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698357 S 2026 0 1 "" nsv522274 8 3437007 3437725 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695054 S 2026 0 1 "" nsv818577 8 3448656 3465484 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418474 S 112 0 1 "" NA19193 nsv523775 8 3448905 3449120 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699598 S 2026 0 1 "" nsv465347 8 3455113 3465853 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541150 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00903 dgv856n27 8 3470227 3475176 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv465349,nsv465348 M 1557 0 2 "" HGDP01030,HGDP01036 nsv397027 8 3483383 3488630 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415605 M 24 "" nsv831211 8 3492068 3647702 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446832 S 95 1 0 "" nsv465351 8 3508331 3530369 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541154 S 1557 0 1 "" 1782681263_A nsv396871 8 3516415 3516466 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415449 M 24 "" dgv2177e1 8 3551652 3554023 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv24948,esv1098,esv1117 M 271 0 0 "" NA12707 nsv6051 8 3559600 3604119 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1710 S 9 0 1 "" NA18555 nsv465352 8 3567534 3574226 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541155 S 1557 0 1 "" NINDS_131 nsv6052 8 3570249 3604086 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8461 S 9 1 0 "" NA12156 dgv2178e1 8 3586932 5942813 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv3273,essv3165,essv1551,essv2930,esv809,esv585,essv1414,essv2955 M 271 0 0 "" NA18972,NA19007,NA19012 nsv519760 8 3609467 3635298 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697035 S 2026 0 1 "" nsv821655 8 3611005 4928252 CNV Gain Sebat_et_al_2004 15273396 ROMA Custom Nimblegen photoprint 85000 probe ROMA oligo array nssv1421203,nssv1421201 M 31 2 0 "" nsv397509 8 3617345 3617428 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416087 M 24 "" nsv397194 8 3617371 3617428 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415772 M 24 "" nsv398299 8 3617565 3617620 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416877 M 24 "" nsv527376 8 3629330 3630327 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703808 S 2026 0 1 "" nsv8267 8 3631313 3635126 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17588,nssv20250 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA12155,NA19221 nsv524848 8 3671607 3696715 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700850 S 2026 0 1 "" nsv8268 8 3673110 5938878 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17768,nssv15700,nssv18867,nssv20340,nssv18927,nssv16367,nssv17731,nssv16460,nssv16044,nssv17459,nssv16816,nssv19003,nssv19041,nssv16256,nssv16953,nssv15730,nssv20310,nssv16400,nssv19071,nssv17589,nssv17701,nssv16786,nssv17499,nssv17188,nssv18612,nssv18837,nssv17708,nssv15790,nssv18943,nssv16555,nssv16337,nssv16983,nssv16777,nssv15922,nssv17559,nssv17678,nssv17278,nssv15905,nssv16525,nssv19011,nssv16717,nssv17256,nssv15845,nssv15875,nssv16520,nssv17013,nssv17529,nssv16807,nssv16815,nssv16442,nssv16472,nssv17648,nssv16875,nssv17618,nssv16534,nssv16846,nssv17226,nssv18913,nssv18883,nssv16615,nssv16876,nssv16490,nssv19131,nssv19784,nssv18642,nssv16382,nssv17791,nssv15559,nssv15499,nssv16502,nssv19161,nssv16585,nssv18897,nssv16074,nssv15952,nssv16444,nssv17399,nssv20280,nssv16474,nssv19223,nssv17248,nssv15529,nssv19814,nssv18973,nssv15191,nssv16504,nssv17058,nssv15221,nssv15589,nssv17218,nssv16845,nssv16134,nssv15161,nssv19724,nssv15670,nssv17821,nssv17158,nssv16352 M 31 30 18 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10847,NA10863,NA11830,NA12155,NA12740,NA12802,NA12872,NA18502,NA18504,NA18517,NA18537,NA18552,NA18563,NA18564,NA18572,NA18853,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19144,NA19173,NA19221,NA19240 nsv465353 8 3674807 5938053 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541156 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00747 nsv818579 8 3674807 5938053 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417580 S 112 1 0 "" NA18972 dgv242e55 8 3674807 5953489 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv34221,esv34327,esv35028 M 771 3 0 "" NA18972,NA19007,NA19012 nsv522242 8 3697068 3705388 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695022 S 2026 0 1 "" nsv516222 8 3729762 3732042 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv673915,nssv660002,nssv666885 M 2026 0 3 "" nsv518942 8 3745558 3750948 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696409 S 2026 0 1 "" nsv518459 8 3757879 3760056 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695896 S 2026 0 1 "" nsv6053 8 3757915 3789724 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1711,nssv10600 M 9 0 2 "" NA18555,NA18956 nsv507435 8 3759055 3765055 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621899 S 4 1 0 "" NA10860 nsv525969 8 3760537 3765443 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702183 S 2026 1 0 "" nsv522307 8 3766260 3766865 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694154 S 2026 0 1 "" nsv516708 8 3769301 3778770 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv693451,nssv657907,nssv683216,nssv679158,nssv672097,nssv683985,nssv671730,nssv653226,nssv690172,nssv663912,nssv679702,nssv687187,nssv688946,nssv683408,nssv683906,nssv672880,nssv687509,nssv676818,nssv683517,nssv674431,nssv684378,nssv657032,nssv672339,nssv678957,nssv665960,nssv673628,nssv660363,nssv677827,nssv681588,nssv672579,nssv689075,nssv657390,nssv680925,nssv682778,nssv662369,nssv684447,nssv681729,nssv665542,nssv665282,nssv669395,nssv657225,nssv680404,nssv669665,nssv677500,nssv677113,nssv659812,nssv659885,nssv674735,nssv686514,nssv664225,nssv668031,nssv692019,nssv659696,nssv669821,nssv675394,nssv658422,nssv690333,nssv651856,nssv664210,nssv686475,nssv663841,nssv670299,nssv671213,nssv675037,nssv660678,nssv682336,nssv680496,nssv659406,nssv688731,nssv655955,nssv662503,nssv653068,nssv657731,nssv670216,nssv654301,nssv654837,nssv653360,nssv685278,nssv693304,nssv664492,nssv668825,nssv664798,nssv681473,nssv661375,nssv686693,nssv673150,nssv663112,nssv674465,nssv689119,nssv689879,nssv687972,nssv693885,nssv679057,nssv680638,nssv684555,nssv667554,nssv667588,nssv658664,nssv663747,nssv692907,nssv657755,nssv691546,nssv662842,nssv672120,nssv653638,nssv671989,nssv657106,nssv692725,nssv669227,nssv661575,nssv678025,nssv666009,nssv664053,nssv672690,nssv658803,nssv658923,nssv692353,nssv657927,nssv679884,nssv669079,nssv677291,nssv686044,nssv666061,nssv657647,nssv663532,nssv686237,nssv655199,nssv671072,nssv677366,nssv682941,nssv657697,nssv674842,nssv680136,nssv692827,nssv672751,nssv662349,nssv666188,nssv689473,nssv669025,nssv678611,nssv672149,nssv686655,nssv688852,nssv665421,nssv667331,nssv661003,nssv666243,nssv684775,nssv668321,nssv662178,nssv669462,nssv654043,nssv668464,nssv676456,nssv674135,nssv676308,nssv692840,nssv664936,nssv660395,nssv678363,nssv667273,nssv677546,nssv670276,nssv659391,nssv668431,nssv681616,nssv678412,nssv681922,nssv675686,nssv660918,nssv653386,nssv673837,nssv689277,nssv662912,nssv654940,nssv673326,nssv687656,nssv655391,nssv686540,nssv673426,nssv675892,nssv669947,nssv679768,nssv668946,nssv676126,nssv689349,nssv653416,nssv659211,nssv670668,nssv654394,nssv689640,nssv672199,nssv678545,nssv693970,nssv688756,nssv652643,nssv655984,nssv687994,nssv691890,nssv681565,nssv664640,nssv673979,nssv672908,nssv653933,nssv667782,nssv681399,nssv681270,nssv684849,nssv654456,nssv671602,nssv666638,nssv664096,nssv684142,nssv683328,nssv687681,nssv666469,nssv661128,nssv678707 M 2026 0 218 "" nsv471725 8 3773395 3777972 CNV Loss Hinds et al 2006 16327809 Oligo_aCGH,PCR Custom Perlegen arrays nssv646006 M 0.192 95 "" dgv857n27 8 3774231 3777675 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv465357,nsv465355,nsv465359,nsv465356,nsv465354,nsv465358 M 1557 0 6 "" HGDP00541,HGDP00663,HGDP00926,NINDS_113,NINDS_135,NINDS_205 nsv818580 8 3774231 3777675 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415968,nssv1416647,nssv1417731,nssv1417870,nssv1415967,nssv1417468,nssv1416754,nssv1417089 M 112 0 8 "" NA06985,NA12740,NA12750,NA18529,NA18960,NA19003,NA19116,NA19160 nsv442356 8 3774469 3777514 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv465360 8 3776680 3777675 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541163 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00723 nsv522390 8 3777675 3779391 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695170 S 2026 1 0 "" nsv831212 8 3781339 3973562 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446833 S 95 1 0 "" esv2752253 8 3817272 3843394 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6989645,essv6982539 M 771 0 1 "" BEC_565 nsv396883 8 3828896 3829021 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415461 M 24 "" nsv522676 8 3842132 3842395 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv706082 S 2026 0 1 "" nsv516017 8 3854921 3861929 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv706107,nssv665755,nssv655161,nssv674265,nssv671603,nssv675038,nssv688947 M 2026 0 7 "" esv2752254 8 3897504 3908549 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6985217,essv6985218 M 771 0 1 "" SPC_127 nsv517894 8 3929480 4020594 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695302 S 2026 0 1 "" dgv440n21 8 3948393 3952313 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv522614,nsv517770 M 2026 0 5 "" nsv831213 8 3952434 4114711 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446834 S 95 0 1 "" nsv519259 8 3955339 3956945 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv683329,nssv655849,nssv655107,nssv692660 M 2026 0 4 "" nsv465363 8 3955339 3972317 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541165 S 1557 1 0 "" 1780862437_A nsv526045 8 3955793 3972317 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702280 S 2026 1 0 "" essv6531 8 3957010 4010219 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18611 nsv397564 8 3961323 3961400 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416142 M 24 "" essv8707 8 3965896 3991249 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19200 nsv515941 8 3971000 4063457 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv666576,nssv661310,nssv655597,nssv684704,nssv686656,nssv704530,nssv671561,nssv684415,nssv691563,nssv672276,nssv688780,nssv658521,nssv676133,nssv667165,nssv686853,nssv682428,nssv652848,nssv660396,nssv703760,nssv666010,nssv667989,nssv675653,nssv684776,nssv693587,nssv687465,nssv676127,nssv677435,nssv666189,nssv653873,nssv662787,nssv660642,nssv663366,nssv655800,nssv674446,nssv686730,nssv668867,nssv688897,nssv652610,nssv667131,nssv687734,nssv664132,nssv691407,nssv689599,nssv664799,nssv686772,nssv661754,nssv663822,nssv690877,nssv684660,nssv654976,nssv661093,nssv658732,nssv656715,nssv677042,nssv656666,nssv665052,nssv664463,nssv684724,nssv681179,nssv653611,nssv665914,nssv669677,nssv691861,nssv693924,nssv666062,nssv680784,nssv656792,nssv661342,nssv662337,nssv685431,nssv660349,nssv679719,nssv673885,nssv661731,nssv691547,nssv691040,nssv663017,nssv676972,nssv689690,nssv670217,nssv685855,nssv668605,nssv672648,nssv686121,nssv663016,nssv658058,nssv678205,nssv659029,nssv673815,nssv676770,nssv674517,nssv692135,nssv666956,nssv653590,nssv667833,nssv659862,nssv677745,nssv657309,nssv671954,nssv673659,nssv686966,nssv665982,nssv661243,nssv680271,nssv681204,nssv681323,nssv684288,nssv687188,nssv657570,nssv698826,nssv687878,nssv688678,nssv687902,nssv666228,nssv666488,nssv676497,nssv679104,nssv675590,nssv689948,nssv671248,nssv680104,nssv677547,nssv702184,nssv677685,nssv692392,nssv684266,nssv653361,nssv675554,nssv691518,nssv676096,nssv658035,nssv672200,nssv681985,nssv659623,nssv680578,nssv662828,nssv667954,nssv667371,nssv685323,nssv664750,nssv655699,nssv668033,nssv666407,nssv661458,nssv663963,nssv656422,nssv692815,nssv668237,nssv660004,nssv652319,nssv690825,nssv672752,nssv670427 M 2026 1 152 "" dgv2179e1 8 3981508 3992580 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv12066,essv14219,essv9561,essv13370 M 271 0 0 "" NA18861,NA18913,NA19159,NA19238 esv34888 8 3981508 4010220 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6979715,essv6979716,essv6988225 M 771 0 1 "" NA18611 nsv465364 8 3982139 3992429 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541166 S 1557 0 1 "" 1780862111_A essv7943 8 3982161 4010219 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19203 nsv471759 8 3982221 3982727 CNV Loss Hinds et al 2006 16327809 Oligo_aCGH,PCR Custom Perlegen arrays nssv646040 M 0.858 95 "" dgv2180e1 8 3984188 3993078 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv10978,essv15927,essv7907 M 271 0 0 "" NA19092,NA19205,NA19239 dgv858n27 8 3987468 3990969 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv465370,nsv465367,nsv465369,nsv465366,nsv465365,nsv465368 M 1557 0 6 "" HGDP00450,HGDP00463,HGDP00464,HGDP00478,HGDP01081,HGDP01202 nsv818581 8 3987468 3990969 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416847,nssv1416848,nssv1418291,nssv1416755 M 112 0 4 "" NA19092,NA19159,NA19238,NA19239 nsv438018 8 3987468 3992429 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv469634 S 269 0 1 Samples from several populations that are part of the HapMap project. "" NA19007 dgv859n27 8 3987468 3995365 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv465373,nsv465371 M 1557 0 2 "" HGDP00943,HGDP01283 nsv442357 8 3989600 3991699 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv818582 8 4013913 4020594 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415739,nssv1416565,nssv1415750 M 112 0 3 "" NA19140,NA19142,NA19171 nsv442084 8 4013916 4019232 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv523605 8 4028764 4095458 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699399 S 2026 0 1 "" nsv818583 8 4030154 4034142 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417886 S 112 0 1 "" NA18853 nsv438019 8 4039867 4040487 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv469635 S 269 0 1 Samples from several populations that are part of the HapMap project. "" NA19007 esv2422512 8 4040046 4114650 CNV Deletion Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161403 S 181 0 1 "" ND03938 nsv6055 8 4074526 4120563 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5052 S 9 0 1 "" NA19129 nsv522080 8 4112508 4116166 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694854 S 2026 0 1 "" nsv524875 8 4116166 4118096 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700880 S 2026 1 0 "" nsv437037 8 4124065 4139318 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv466918 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA12865 nsv438020 8 4150121 4158194 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv469636 S 269 0 1 Samples from several populations that are part of the HapMap project. "" NA19007 nsv465374 8 4157992 4166894 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541176 S 1557 0 1 "" NINDS_132 nsv438021 8 4173158 4183588 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv469637 S 269 0 1 Samples from several populations that are part of the HapMap project. "" NA19007 nsv465375 8 4188867 4238692 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541177 S 1557 0 1 "" NINDS_117 nsv519066 8 4200591 4241045 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696538 S 2026 0 1 "" nsv396623 8 4209458 4209797 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415201 M 24 "" esv2752255 8 4214384 4315624 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6990041,essv6984918,essv6984917 M 771 0 1 "" SPC_193 nsv524196 8 4221299 4227988 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700079 S 2026 0 1 "" essv15651 8 4230863 4755808 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18912 nsv465376 8 4245499 4259989 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541178 S 1557 0 1 "" NINDS_81 nsv521522 8 4245603 4249934 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698140 S 2026 0 1 "" nsv525809 8 4282853 4344933 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701993 S 2026 0 1 "" nsv522960 8 4285284 4309862 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698629 S 2026 0 1 "" esv34276 8 4290322 4338060 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6979995,essv6988287 M 771 0 1 "" NA18912 nsv523545 8 4290806 4323090 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699323 S 2026 0 1 "" nsv465377 8 4293028 4307750 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541179 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00057 nsv398214 8 4295266 4301915 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416792 M 24 "" nsv519564 8 4307750 4308064 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696923 S 2026 0 1 "" nsv465379 8 4308758 4439537 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541180 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01172 nsv465380 8 4312692 4344933 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541181 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01378 nsv519316 8 4312692 4344933 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694323 S 2026 0 1 "" nsv521320 8 4321294 4322026 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697927 S 2026 0 1 "" dgv240n6 8 4331053 4331203 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv396927,nsv397037 M 24 "" dgv441n21 8 4365120 4402479 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv518795,nsv527679 M 2026 0 2 "" nsv518401 8 4373478 4384009 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695831 S 2026 0 1 "" nsv465382 8 4387607 4400690 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541182 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00730 nsv465384 8 4400690 4499543 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541184 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00531 nsv528058 8 4432582 4453450 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704592 S 2026 0 1 "" nsv465385 8 4434467 4452509 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541185 S 1557 0 1 "" NINDS_228 nsv437589 8 4436543 4453450 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467470 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18515 esv2422279 8 4446054 4629092 CNV Deletion Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161301 S 181 0 1 "" ND00700 nsv465386 8 4454742 4664069 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541186 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00407 nsv465387 8 4458155 4468617 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541187 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01304 nsv517334 8 4460541 4476960 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv668982,nssv683063,nssv681630,nssv697897,nssv666172,nssv672503,nssv693525,nssv683217,nssv651758,nssv683114 M 2026 0 10 "" nsv465388 8 4463376 4472656 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541188 S 1557 0 1 "" 1782681114_A dgv860n27 8 4468794 4475454 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv465390,nsv465389 M 1557 0 2 "" 1788485381_A,HGDP00136 nsv831214 8 4485535 4666883 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446835 S 95 1 0 "" nsv527421 8 4496111 4501484 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703859 S 2026 0 1 "" nsv516820 8 4498078 4501484 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702084,nssv656423,nssv671161,nssv704195,nssv679105,nssv655578,nssv676950,nssv685766 M 2026 0 8 "" nsv465392 8 4551485 4561939 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541191 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01232 nsv524149 8 4551485 4647993 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700028 S 2026 0 1 "" nsv516719 8 4553929 4613968 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702244,nssv669417,nssv665254,nssv689085,nssv653408,nssv691444,nssv673427,nssv679260,nssv691613 M 2026 3 6 "" nsv831216 8 4553962 4715523 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446836 S 95 1 0 "" nsv438022 8 4576576 4586136 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv469638 S 269 0 1 Samples from several populations that are part of the HapMap project. "" NA19007 nsv818584 8 4587857 4589795 CNV Gain+Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416872,nssv1416455,nssv1416861,nssv1416454 M 112 2 2 "" NA10857,NA12043,NA18516,NA18517 essv12700 8 4596112 4755808 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18914 essv11627 8 4596112 4890346 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19154 dgv2181e1 8 4597504 4707779 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv8689,essv13505 M 271 0 0 "" NA18912,NA18914 nsv437592 8 4597753 4706329 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467473 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18914 nsv465393 8 4597753 4764703 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541192 S 1557 0 1 "" NINDS_169 nsv442086 8 4598305 4697836 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv243e55 8 4605186 4706329 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv34237,esv34896 M 771 0 2 "" NA18912,NA18914 nsv438023 8 4619513 4691949 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv469639,nssv469640 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA18912,NA18914 nsv465396 8 4625061 4631280 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541195 S 1557 0 1 "" 1780854337_A nsv522399 8 4644880 4646155 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695179 S 2026 0 1 "" nsv465397 8 4646730 4649068 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541196 S 1557 0 1 "" NINDS_133 nsv516545 8 4646730 4649068 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv669046,nssv682632 M 2026 0 2 "" essv19320 8 4654062 4688714 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12872 nsv465398 8 4669277 4673362 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541197 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00771 nsv465399 8 4677982 4688306 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541198 S 1557 0 1 "" NINDS_104 nsv465400 8 4680707 4687419 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541199 S 1557 0 1 "" NINDS_125 nsv437593 8 4691949 4749173 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467474 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19161 dgv2182e1 8 4696921 4754112 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv9477,essv8267,essv8063 M 271 0 0 "" NA19153,NA19154,NA19161 nsv818585 8 4706056 4743217 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416757,nssv1416756 M 112 0 2 "" NA19160,NA19161 nsv515524 8 4706056 4744792 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv682008,nssv663823,nssv655491,nssv692339,nssv682547,nssv693202,nssv677549,nssv692041,nssv688948,nssv666011,nssv674884,nssv677164 M 2026 0 12 "" essv13967 8 4706329 4742185 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19160 nsv442087 8 4706329 4742189 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv438024 8 4708927 4717662 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv469643,nssv469642 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA19160,NA19161 nsv465401 8 4716667 4736963 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541200 S 1557 0 1 "" NINDS_106 nsv397789 8 4765925 4765925 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416367 M 24 "" nsv523028 8 4797243 4797340 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698708 S 2026 0 1 "" nsv522042 8 4797243 4798506 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694812 S 2026 0 1 "" nsv524085 8 4799844 4803438 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699954 S 2026 1 0 "" nsv507436 8 4811610 4817610 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621900 S 4 1 0 "" NA10860 nsv397354 8 4928644 4928940 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415932 M 24 "" nsv523969 8 4988315 4989886 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699821 S 2026 0 1 "" nsv831217 8 4994857 5197501 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446837 S 95 0 1 "" nsv525020 8 5058678 5060702 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701059 S 2026 0 1 "" nsv465403 8 5063717 5103498 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541201 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00625 nsv438025 8 5065307 5076194 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv469644 S 269 0 1 Samples from several populations that are part of the HapMap project. "" NA19007 nsv516401 8 5094050 5095977 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv668072,nssv689779,nssv685573,nssv679605 M 2026 0 4 "" nsv507437 8 5107577 5113577 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617758 S 4 1 0 "" CHM nsv519292 8 5156294 5159862 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696772 S 2026 0 1 "" nsv526888 8 5172303 5173455 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703246 S 2026 1 0 "" nsv520806 8 5312389 5316899 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv692340,nssv675654 M 2026 0 2 "" nsv520454 8 5331434 5687429 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697430 S 2026 0 1 "" nsv438027 8 5340694 5350447 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv469645 S 269 0 1 Samples from several populations that are part of the HapMap project. "" NA19007 esv2422392 8 5394807 5761353 CNV Deletion Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161279 S 181 0 1 "" ND01676 nsv519050 8 5404426 5407105 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696521 S 2026 0 1 "" nsv465404 8 5413758 5430979 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541202 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01053 nsv510124 8 5426429 5432429 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618279 S 4 0 1 "" CHM dgv861n27 8 5448246 5690873 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv465407,nsv465405,nsv465408 M 1557 3 0 "" HGDP00302,HGDP00330,HGDP00333 nsv831218 8 5464898 5627723 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446838 S 95 1 0 "" esv2422369 8 5473011 6112336 CNV Deletion Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161366 S 181 0 1 "" ND03713 nsv510125 8 5504981 5510981 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618280 S 4 0 1 "" CHM nsv465409 8 5553852 5814540 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541207 S 1557 0 1 "" NINDS_84 essv23159 8 5561105 5594564 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA10831 nsv437038 8 5563446 5594564 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv466919 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA10859 essv23280 8 5571263 5591735 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA07345 nsv465410 8 5573594 5591903 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541208 S 1557 0 1 "" 1780854235_A nsv517052 8 5579321 5595071 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv677206,nssv675752,nssv671456,nssv660445,nssv668709,nssv664541,nssv688057,nssv661951,nssv671761,nssv672580,nssv688118,nssv693480,nssv669418,nssv667867,nssv688413,nssv689655,nssv693321,nssv691175,nssv652299,nssv681818,nssv671838,nssv671034,nssv690318,nssv681437,nssv687386,nssv659169,nssv665302,nssv668499,nssv665189,nssv659886,nssv690471,nssv667885,nssv654941,nssv685152,nssv666935,nssv684961,nssv672254,nssv655724,nssv654395,nssv659730,nssv661732,nssv670330,nssv655678,nssv698863,nssv671214,nssv678425,nssv656316,nssv654513,nssv692828,nssv653970,nssv654533,nssv671903,nssv658746,nssv665109,nssv675519,nssv665740,nssv680608,nssv653417,nssv686694,nssv660424,nssv680591,nssv670640,nssv688380,nssv683370,nssv692588,nssv694027,nssv690380,nssv657868,nssv673459,nssv689161,nssv676627,nssv663842,nssv667511,nssv667646,nssv666116,nssv675484,nssv683064,nssv658448,nssv688757,nssv685934,nssv680220,nssv681707,nssv687570,nssv672722,nssv676134,nssv689996,nssv670019,nssv684483,nssv653553,nssv690878,nssv662114,nssv680568,nssv658862,nssv686013,nssv668117,nssv673062,nssv690650,nssv653694,nssv667207,nssv688694,nssv675615,nssv655640,nssv651923,nssv688249,nssv691786,nssv682779,nssv683096,nssv687064,nssv684812,nssv669733,nssv655620,nssv657648,nssv670444,nssv671678,nssv689107,nssv682997,nssv687376,nssv678682,nssv691636,nssv657227,nssv663871,nssv688078,nssv652992,nssv663553,nssv692460,nssv676723,nssv663789,nssv668368,nssv682392,nssv667190,nssv692304,nssv682337,nssv688854,nssv679367,nssv674667,nssv673937,nssv668780,nssv655461,nssv673172,nssv663979,nssv652020,nssv684556,nssv685802,nssv683330,nssv689740,nssv688433,nssv662443,nssv664477,nssv693361,nssv678365,nssv691360,nssv676790,nssv672605,nssv690638,nssv675010,nssv668088,nssv661814,nssv683986,nssv656853,nssv679457,nssv680199,nssv673118,nssv671081,nssv666269,nssv685234,nssv686907,nssv680543,nssv679965,nssv653757,nssv690965,nssv692681,nssv666385,nssv656646,nssv654434,nssv675077,nssv663932,nssv661261,nssv657908,nssv662896 M 2026 0 179 "" dgv2183e1 8 5581441 5595762 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1058,essv1679,essv2724,essv25145,essv3315,essv6857,essv3504,essv3579,essv7245,essv4533,essv23763,essv6435,essv3641,essv18565 M 271 0 0 "" NA10851,NA11839,NA11994,NA18558,NA18566,NA18592,NA18635,NA18944,NA18948,NA18966,NA18975,NA18987,NA18992,NA18999 esv33313 8 5583136 5591731 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv96951 S 51 0 1 "" 21817 dgv862n27 8 5583199 5591903 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv465415,nsv465416,nsv465413,nsv465420,nsv465412,nsv465421,nsv465422,nsv465414,nsv465425,nsv465424,nsv465411,nsv465418,nsv465419,nsv465423 M 1557 0 14 "" 1780854210_A,1780854545_A,1780862299_A,1780862415_A,1780862432_A,1782681080_A,HGDP00070,HGDP00096,HGDP00433,HGDP00587,HGDP00684,HGDP00735,HGDP01065,HGDP01401 nsv818586 8 5583199 5591903 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416251,nssv1417640,nssv1418080,nssv1417189,nssv1416249,nssv1415970,nssv1418082,nssv1417623,nssv1417365,nssv1417681,nssv1415969 M 112 0 11 "" NA10851,NA10859,NA11882,NA12056,NA12740,NA12751,NA18558,NA18944,NA18987,NA18992,NA18999 nsv442386 8 5586134 5591731 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv438028 8 5587999 5590045 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv469646,nssv469647 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA10859,NA11882 dgv2184e1 8 5588817 5591735 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv6111,essv23699,essv5837 M 271 0 0 "" NA12740,NA18524,NA18573 dgv2185e1 8 5588817 5594564 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv21612,essv19730,essv24168,essv24328 M 271 0 0 "" NA10859,NA11882,NA12155,NA12751 nsv818587 8 5588859 5591903 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415904 S 112 0 1 "" NA11994 nsv526578 8 5594564 5632103 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702896 S 2026 1 0 "" nsv465426 8 5604398 5616334 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541224 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00460 nsv518159 8 5607458 5611166 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695580 S 2026 0 1 "" nsv438029 8 5638409 5641012 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv469648 S 269 0 1 Samples from several populations that are part of the HapMap project. "" NA19007 nsv465429 8 5671912 5707379 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541226 S 1557 0 1 "" NINDS_61 nsv521464 8 5671912 5707379 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698075 S 2026 0 1 "" nsv465430 8 5733260 5751358 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541227 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01319 nsv465431 8 5733260 6235652 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541228 S 1557 0 1 "" NINDS_219 esv2752258 8 5748550 5794040 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6982896,essv6982898,essv6982897,essv6989696 M 771 0 1 "" BEC_608 nsv465432 8 5751214 5814805 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541229 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00397 nsv507438 8 5768268 5774268 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617759,nssv620403,nssv621901,nssv623027 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv6056 8 5787859 5833679 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6196 S 9 0 1 "" NA12156 nsv521870 8 5805198 5812602 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694642 S 2026 0 1 "" esv33551 8 5813919 5818714 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101571 S 51 0 1 "" 21603 nsv528138 8 5819856 5823079 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704683 S 2026 0 1 "" nsv442088 8 5841704 5938256 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv523983 8 5851194 5853489 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699839 S 2026 0 1 "" nsv527841 8 5863519 5886581 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704339 S 2026 1 0 "" nsv397510 8 5874101 5875528 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416088 M 24 "" nsv831219 8 5905383 6095658 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446840,nssv1446841 M 95 2 0 "" nsv8270 8 5949893 6008396 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17489,nssv19033,nssv16550 M 31 3 0 Samples from several populations that are part of the HapMap project. "" NA18504,NA18853,NA19173 nsv397989 8 5960212 5960212 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416567 M 24 "" dgv2186e1 8 6023403 6069687 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv903,essv11472,esv1276 M 271 0 0 "" NA18856 nsv8271 8 6026540 6032874 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15619,nssv15820 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA12802,NA18572 nsv437594 8 6049216 6076293 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467475 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19221 dgv2187e1 8 6049479 6069687 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv8012,essv9532 M 271 0 0 "" NA19221,NA19223 nsv8272 8 6049956 6057404 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20370 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19221 nsv818588 8 6050208 6054003 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416359 S 112 0 1 "" NA18856 nsv395982 8 6050290 6050604 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv414560 M 24 "" esv34898 8 6050900 6055420 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6980600,essv6980601 M 771 0 1 "" NA19221 nsv442089 8 6050901 6056171 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv438030 8 6052575 6056851 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv469650,nssv469649 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA19221,NA19223 nsv465433 8 6052951 6071456 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541230 S 1557 0 1 "" 1780854238_A nsv507439 8 6057856 6063856 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621902 S 4 1 0 "" NA10860 esv2752259 8 6060650 6175745 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6988562,essv6986221,essv6982634,essv6982635,essv6982633 M 771 1 0 "" BEC_573 nsv518189 8 6066317 6118677 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695611 S 2026 1 0 "" esv2752260 8 6066540 6130460 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6983915,essv6989877,essv6983916 M 771 0 1 "" BEC_730 nsv8273 8 6067426 6069048 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18672 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18502 nsv465434 8 6078662 6158732 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541231 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01310 nsv516468 8 6089446 6102767 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv668571,nssv680528,nssv663508 M 2026 0 3 "" dgv2188e1 8 6092385 6147262 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv4944,esv912,esv1173 M 271 0 0 "" NA18537 nsv8274 8 6094686 6153100 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16905,nssv17308,nssv15649 M 31 2 1 Samples from several populations that are part of the HapMap project. "" NA18537,NA18572,NA19144 nsv522986 8 6101681 6107334 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698656 S 2026 0 1 "" nsv524587 8 6101681 6118677 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700546 S 2026 0 1 "" nsv818590 8 6101681 6147126 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417125 S 112 1 0 "" NA18537 nsv7414 8 6103490 6143946 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3614 S 9 0 0 "" NA12878 nsv465435 8 6106038 6240640 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541232 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01293 nsv438031 8 6108358 6147262 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv469651 S 269 0 1 Samples from several populations that are part of the HapMap project. "" NA18537 nsv442090 8 6109951 6111529 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv437039 8 6111533 6147262 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv466920 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA10831 nsv527005 8 6116459 6274578 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703380 S 2026 1 0 "" nsv437040 8 6140685 6147262 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv466921 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA07019 nsv518388 8 6143066 6158732 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695818 S 2026 0 1 "" dgv442n21 8 6155018 6165710 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv527627,nsv523817 M 2026 0 2 "" nsv517771 8 6158732 6176200 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv653179,nssv669876,nssv679686 M 2026 0 3 "" essv17381 8 6160762 6184590 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18855 dgv2189e1 8 6160762 6236366 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1289,essv19148,esv990 M 271 0 0 "" NA12812 essv17220 8 6163545 6201630 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18857 nsv818591 8 6164343 6211500 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416077 S 112 0 1 "" NA12812 nsv442091 8 6165713 6187827 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv818592 8 6166523 6187853 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416362,nssv1416360 M 112 0 2 "" NA18855,NA18857 nsv526765 8 6195497 6235652 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703117 S 2026 0 1 "" nsv521871 8 6201691 6211500 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694643 S 2026 0 1 "" nsv523757 8 6210533 6211500 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699577 S 2026 0 1 "" nsv524404 8 6250491 6278893 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700323 S 2026 0 1 "" dgv443n21 8 6266846 6283958 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv528663,nsv523681 M 2026 0 2 "" dgv444n21 8 6274750 6278932 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv517509,nsv526687 M 2026 0 29 "" nsv6057 8 6298019 6330167 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1712 S 9 1 0 "" NA18555 esv2422383 8 6349797 6769003 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161384 S 181 1 0 "" ND00672 nsv397733 8 6350217 6350299 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416311 M 24 "" nsv522043 8 6358884 6361761 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694813 S 2026 0 1 "" nsv6058 8 6444435 6461745 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10601 S 9 1 0 "" NA18956 nsv526417 8 6474857 6481791 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702718 S 2026 0 1 "" nsv521585 8 6478073 6478589 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698202 S 2026 0 1 "" nsv524670 8 6487952 6527395 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700640 S 2026 0 1 "" nsv831220 8 6515253 6715901 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446843,nssv1446842 M 95 2 0 "" nsv6059 8 6538807 6571669 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3615 S 9 1 0 "" NA12878 nsv465436 8 6555609 6908814 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541233 S 1557 1 0 "" NINDS_20 esv2752262 8 6626309 6998485 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6988577,essv6982741,essv6982740,essv6982739,essv6982738 M 771 1 0 "" BEC_586 nsv397975 8 6635591 6635730 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416553 M 24 "" nsv465437 8 6642801 6816495 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541234 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00805 nsv396625 8 6643506 6643560 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415203 M 24 "" dgv445n21 8 6697215 6702467 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv527446,nsv524867 M 2026 0 2 "" nsv528374 8 6718913 6908814 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704961 S 2026 1 0 "" dgv2190e1 8 6719130 6880128 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2221,essv446,essv10408,essv17546,essv13662,essv16507,essv9243,essv11279,essv11086,essv4306,essv23217,essv7819,essv16350,essv1481,essv19922,essv20044,essv14994,essv2536,essv1611,essv15092,essv2046,essv5095,essv11871,essv165,essv3107 M 271 0 0 "" NA07048,NA12156,NA12762,NA12813,NA18558,NA18577,NA18603,NA18870,NA18942,NA18949,NA18952,NA18960,NA18968,NA18969,NA18980,NA19003,NA19119,NA19128,NA19129,NA19193,NA19204,NA19210,NA19211,NA19221,NA19222 essv14510 8 6719130 7093758 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19202 dgv2191e1 8 6719130 8344153 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2986,esv655,essv4578,esv695 M 271 0 0 "" NA18524,NA18981 nsv516431 8 6732895 6741958 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv668322,nssv658367 M 2026 0 2 "" nsv831221 8 6741630 6923922 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446845,nssv1446844,nssv1446846,nssv1446847 M 95 4 0 "" nsv396875 8 6743635 6743755 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415453 M 24 "" esv32587 8 6745878 6747393 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98414 S 51 0 1 "" 22352 esv32865 8 6761814 6762938 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99102 S 51 0 1 "" 21938 nsv509248 8 6766245 6824281 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623527,nssv619519 M 4 2 0 "" NA10860,NA18994 nsv524367 8 6778120 6816495 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700279 S 2026 0 1 "" nsv8275 8 6784906 6789083 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16564 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA10839 nsv528781 8 6798969 6810195 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705447 S 2026 0 1 "" essv18512 8 6799659 6814575 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12763 nsv6060 8 6801529 6869017 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3616,nssv5053,nssv714,nssv10602,nssv9455,nssv11176,nssv1713,nssv6198 M 9 0 8 "" NA12156,NA12878,NA15510,NA18517,NA18555,NA18956,NA19129,NA19240 nsv21 8 6802213 6847036 CNV Loss Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv21 S 1 0 1 "" NA15510 nsv6061 8 6804531 6821155 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5054,nssv713 M 9 2 0 "" NA19129,NA19240 nsv438032 8 6810705 6811452 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv469653,nssv469654 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA12801,NA12813 nsv527917 8 6810952 6867213 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704423 S 2026 1 0 "" nsv525411 8 6811301 6813700 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701535 S 2026 1 0 "" nsv8276 8 6811881 6814375 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15982,nssv16645 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA18942,NA18980 esv32907 8 6813487 6816346 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101576,essv100865,essv96886,essv98093,essv99516,essv98461,essv96333 M 51 7 0 "" 21603,21656,21817,22259,22335,22352,22371 nsv8277 8 6813560 6815860 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15850,nssv16935,nssv19253,nssv15251,nssv16906,nssv16397 M 31 0 6 Samples from several populations that are part of the HapMap project. "" NA12802,NA12872,NA18537,NA18552,NA18563,NA18972 nsv8278 8 6815199 6868714 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16164,nssv15679,nssv20490,nssv17043,nssv17798,nssv15281,nssv19313,nssv20400,nssv19283,nssv16012,nssv16837,nssv19844,nssv19343,nssv16675,nssv16532,nssv20460 M 31 7 5 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA11830,NA12155,NA12872,NA18517,NA18572,NA18942,NA18972,NA18975,NA18980,NA19221 nsv471499 8 6816001 6853605 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv547838,nssv547839,nssv547840 M 3 "" nsv437041 8 6820793 6864878 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv466922 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA10859 nsv6062 8 6827900 6840527 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv11177,nssv10603 M 9 2 0 "" NA15510,NA18956 nsv22 8 6828365 6840527 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv22 S 1 1 0 "" NA15510 nsv482118 8 6841698 6844122 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558479 S 1 1 0 "" KB1 nsv6063 8 6844238 6845190 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10604 S 9 1 0 "" NA18956 nsv6064 8 6846814 6879044 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1714,nssv3617 M 9 2 0 "" NA12878,NA18555 nsv482119 8 6860805 6863226 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558480 S 1 1 0 "" KB1 nsv465438 8 6867213 6908814 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541235 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01035 nsv515968 8 6867213 8182850 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv688079,nssv675785,nssv655076,nssv690827,nssv675040,nssv699086,nssv678525,nssv694614,nssv698967,nssv689907,nssv665528,nssv693362,nssv676628,nssv687065 M 2026 9 5 "" nsv821656 8 6871616 8212037 CNV Gain Sebat_et_al_2004 15273396 ROMA Custom Nimblegen photoprint 85000 probe ROMA oligo array nssv1421211,nssv1421204,nssv1421209,nssv1421205,nssv1421207,nssv1421210,nssv1421208,nssv1421206 M 31 8 0 "" dgv2192e1 8 6890631 8212456 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv15948,essv18055,essv17370,essv15434,essv5544,essv14017,essv24375,essv737,essv6663,essv3302,essv23999,essv19447,essv18524,essv12055,essv13412,essv13110,essv21604,essv971,essv7718,essv19491,essv8030,essv21555,essv21994,essv21894,essv10504 M 271 0 0 "" NA06991,NA06993,NA11840,NA11995,NA12155,NA12707,NA12716,NA12763,NA12864,NA12873,NA18515,NA18517,NA18529,NA18608,NA18633,NA18859,NA18871,NA18972,NA18981,NA19003,NA19143,NA19192,NA19206,NA19222,NA19238 nsv831222 8 6901133 7115746 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446848 S 95 0 1 "" nsv433397 8 6928066 7041357 CNV Gain Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463278 S 9 1 0 Samples from several populations that are part of the HapMap project. "" NA19240 nsv508495 8 6934573 7162022 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618827,nssv622590 M 4 0 2 "" NA10860,NA18994 nsv510977 8 6934573 8059438 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624323,nssv621605 M 4 0 0 "" NA15510,NA18994 nsv469660 8 6936558 7093758 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649589 M 265 0 7 Samples from several populations that are part of the HapMap project. "" essv14350 8 6936559 7093758 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19194 dgv2193e1 8 6936559 7361701 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv7161,essv1578,essv21740 M 271 0 0 "" NA12248,NA18547,NA18997 nsv509249 8 7005858 7162022 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619520 S 4 1 0 "" NA10860 esv33606 8 7040625 7790962 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101567,essv97474,essv100704,essv97028,essv99056,essv98047,essv99517,essv96264 M 51 2 6 "" 21603,21616,21656,21817,21938,22259,22335,22371 nsv831223 8 7041464 7238576 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446865,nssv1446864,nssv1446852,nssv1446849,nssv1446857,nssv1446854,nssv1446855,nssv1446853,nssv1446863,nssv1446856,nssv1446861,nssv1446858,nssv1446859,nssv1446860 M 95 0 14 "" nsv8279 8 7060897 7076244 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17828,nssv19373,nssv16936,nssv19191,nssv18702 M 31 3 2 Samples from several populations that are part of the HapMap project. "" NA12155,NA18502,NA18552,NA18860,NA18972 nsv6066 8 7084394 7148441 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10605,nssv9742 M 9 0 2 "" NA18507,NA18956 nsv8281 8 7092123 7930429 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16995,nssv19311,nssv15910,nssv20610,nssv18151,nssv18031,nssv16897,nssv17133,nssv17971,nssv17338,nssv19874,nssv17107,nssv19251,nssv17025,nssv17941,nssv17769,nssv15889,nssv18732,nssv15799,nssv17458,nssv16867,nssv18061,nssv17518,nssv17193,nssv16517,nssv17118,nssv17346,nssv16042,nssv17103,nssv16957,nssv19137,nssv17017,nssv16547,nssv16735,nssv17488,nssv15371,nssv16610,nssv17148,nssv15995,nssv17858,nssv16025,nssv18957,nssv17709,nssv16194,nssv19403,nssv16594,nssv19183,nssv16712,nssv17223,nssv19904,nssv17286,nssv16592,nssv17238,nssv20730,nssv17679,nssv15859,nssv17911,nssv17163,nssv19153,nssv19017,nssv16132,nssv18181,nssv17316,nssv17376,nssv15739,nssv18001,nssv16316,nssv16682,nssv16987,nssv15935,nssv17609,nssv17851,nssv15709,nssv20520,nssv16652,nssv17699,nssv17649,nssv16965,nssv19463,nssv15341,nssv18211,nssv20580,nssv16795,nssv19221,nssv17178,nssv16487,nssv16684,nssv19123,nssv17368,nssv20550,nssv17208,nssv16577,nssv19493,nssv19994,nssv16622,nssv16654,nssv16286,nssv15880,nssv17549,nssv17055,nssv17619,nssv19047,nssv16966,nssv19063,nssv19281,nssv15311,nssv20640,nssv19934,nssv16774,nssv16624,nssv17398,nssv16825,nssv15829,nssv16562,nssv20700,nssv17579,nssv17519,nssv20670,nssv16927,nssv19964,nssv18987,nssv17881,nssv19077,nssv17669,nssv17137,nssv16072,nssv16705,nssv16714,nssv15965,nssv16457,nssv17639,nssv17047,nssv16580,nssv20024 M 31 25 15 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10847,NA10863,NA11830,NA12155,NA12740,NA12802,NA12872,NA18502,NA18504,NA18517,NA18537,NA18552,NA18563,NA18564,NA18572,NA18853,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19144,NA19173,NA19221,NA19240 nsv831224 8 7105087 7258467 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446877,nssv1446888,nssv1446875,nssv1446867,nssv1446882,nssv1446876,nssv1446872,nssv1446878,nssv1446871,nssv1446881,nssv1446879,nssv1446880,nssv1446866,nssv1446870,nssv1446887,nssv1446885,nssv1446874,nssv1446883,nssv1446886,nssv1446869,nssv1446868 M 95 1 20 "" nsv831225 8 7138613 7258467 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446891,nssv1446890,nssv1446897,nssv1446892,nssv1446893,nssv1446896,nssv1446889,nssv1446898,nssv1446899,nssv1446894,nssv1446900 M 95 0 11 "" dgv2194e1 8 7156826 7328299 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv3212,essv5505,essv15219,essv1777,essv20780,essv22550,essv578,essv13931,essv3155,essv23172,essv7754,essv6304,essv16168,essv14582,essv6174,essv12504,essv24769,essv22934,essv21283,essv7336,essv6000,essv8457,essv4272,essv3485,essv11568,essv4190,essv23334,essv14179,essv4382,essv16249,essv14083,essv15355,essv20176,essv17172,essv17908,essv22383,essv17740,essv14707,essv13520,essv493,essv12370,essv3734,essv13204,essv400 M 271 0 0 "" NA07348,NA07357,NA10831,NA10855,NA10860,NA11832,NA12003,NA12146,NA12156,NA12750,NA12875,NA18516,NA18526,NA18532,NA18542,NA18570,NA18571,NA18573,NA18603,NA18609,NA18632,NA18854,NA18861,NA18862,NA18952,NA18961,NA18971,NA18974,NA18992,NA18997,NA18998,NA19012,NA19094,NA19100,NA19102,NA19138,NA19140,NA19159,NA19160,NA19161,NA19171,NA19173,NA19202,NA19207 nsv471650 8 7156826 8067760 CNV Gain+Loss Sharp et al 2005 15918152 BAC_aCGH,FISH Eichler Segmental Duplication BAC array nssv550189,nssv549694,nssv548837,nssv550178,nssv550183,nssv549698,nssv548821,nssv548820,nssv548830,nssv548843,nssv549693,nssv548834,nssv550182,nssv550185,nssv550190,nssv548845,nssv548831,nssv549696,nssv548838,nssv548841,nssv549705,nssv549702,nssv549700,nssv550177,nssv548839,nssv548844,nssv548842,nssv548822,nssv548835,nssv549695,nssv550184,nssv548828,nssv548823,nssv550179,nssv548846,nssv548832,nssv548836,nssv550186,nssv550187,nssv549703,nssv548827,nssv549697,nssv550180,nssv550181,nssv549699,nssv548833,nssv549701,nssv548824,nssv548840,nssv550188,nssv548819,nssv548829,nssv548826,nssv548825,nssv549704 M 48 12 18 "" JK1051,JK1058,JK1061,NA10469,NA10470,NA10471,NA10472,NA10492,NA10493,NA10495,NA10496,NA10967,NA10969,NA10971,NA10976,NA10979,NA11323,NA11521,NA11523,NA11776,NA15725,NA15726,NA15727,NA15729,NA15732,NA16688,NA16689,NA17014,NA17017,P86GA dgv2195e1 8 7156826 8212456 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv16658,essv13777,essv8885,essv1677,essv10439,essv24912,essv17530,essv2502,essv16542,essv10039,essv7590,essv18666,essv9879,essv5916,essv4449,essv11387,essv9760,essv41,essv22161,essv14419,essv5330,essv9603,essv15052,essv10527,essv1885,essv5064,essv5168,essv21794,essv7031,essv8723,essv6756,essv16580,essv23783,essv20970,essv22086,essv22860,essv19246,essv10677,essv8364,essv13025,essv9117,essv8149,essv13398,essv15665,essv24014,essv10384,essv21856,essv1634,essv19014,essv24138,essv4672,essv11900,essv1003,essv11202,essv3091,essv11116 M 271 0 0 "" NA06994,NA10838,NA10847,NA10857,NA11839,NA12005,NA12154,NA12234,NA12239,NA12760,NA12762,NA12763,NA12801,NA12873,NA18502,NA18515,NA18545,NA18550,NA18552,NA18562,NA18563,NA18564,NA18576,NA18612,NA18622,NA18855,NA18858,NA18859,NA18860,NA18863,NA18872,NA18912,NA18942,NA18964,NA18969,NA18976,NA18991,NA18992,NA19003,NA19092,NA19099,NA19127,NA19129,NA19141,NA19142,NA19145,NA19153,NA19171,NA19193,NA19201,NA19204,NA19206,NA19210,NA19211,NA19222,NA19240 nsv438033 8 7201387 7206953 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv469667,nssv469664,nssv469655,nssv469661,nssv469660,nssv469656,nssv469659,nssv469662,nssv469666,nssv469665,nssv469657,nssv469658 M 269 0 12 Samples from several populations that are part of the HapMap project. "" NA06994,NA07029,NA18862,NA18863,NA18871,NA18872,NA19138,NA19139,NA19140,NA19142,NA19239,NA19240 dgv138n17 8 7202856 7210635 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437595,nsv437596 M 60 0 2 "" NA19139,NA19142 nsv7415 8 7207070 12500379 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1718,nssv9743,nssv6200,nssv3618,nssv716,nssv3624,nssv5055,nssv3619,nssv9744,nssv1717,nssv10610,nssv9915,nssv11181,nssv11179,nssv10607,nssv3622,nssv9457,nssv10609,nssv6201,nssv717,nssv6202,nssv5057 M 9 0 0 "" NA12156,NA12878,NA15510,NA18507,NA18517,NA18555,NA18956,NA19129,NA19240 essv14023 8 7209495 7222992 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18862 esv2752265 8 7222992 8183341 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6984041,essv6987484,essv6988746,essv6984042 M 771 1 0 "" BEC_758 dgv31n14 8 7230125 7381443 CNV Loss Cooper et al 2008 18776910 SNP_array nsv433241,nsv433242,nsv433240 M 9 0 3 "" NA18507,NA18517,NA19240 nsv442397 8 7237790 7836261 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv469521 8 7238603 7341931 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649554 M 265 8 42 Samples from several populations that are part of the HapMap project. "" dgv25n31 8 7275228 7390000 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis nsv471549,nsv471550,nsv471472,nsv471474,nsv471471 M 3 "" esv2752266 8 7278542 8208881 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6982530,essv6982529,essv6982528,essv6989642,essv6989643 M 771 0 1 "" BEC_563 nsv508496 8 7340033 7857571 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618828 S 4 0 1 "" NA10860 nsv396555 8 7342808 7352275 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415133 M 24 "" nsv471457 8 7408721 7427585 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548334,nssv548332,nssv548335 M 3 "" nsv6067 8 7427920 7428918 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6199 S 9 1 0 "" NA12156 nsv6068 8 7636808 7704556 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9456,nssv10606 M 9 0 2 "" NA18517,NA18956 nsv6069 8 7661371 7680653 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv11180,nssv3623,nssv1716,nssv1715 M 9 3 0 "" NA12878,NA15510,NA18555 nsv23 8 7662979 7680653 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv23 S 1 1 0 "" NA15510 nsv433398 8 7683445 7869061 CNV Gain Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463279 S 9 1 0 Samples from several populations that are part of the HapMap project. "" NA12156 dgv26n31 8 7693579 7777000 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis nsv471548,nsv471473,nsv471470,nsv471469 M 3 "" nsv471458 8 7742812 7758729 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548337,nssv548336 M 3 "" nsv482120 8 7742812 7758729 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558481 S 1 1 0 "" KB1 dgv10n29 8 7767399 7954978 CNV Gain Locke et al 2006 16826518 BAC_aCGH nsv469564,nsv469864 M 265 5 0 "" nsv471651 8 7767400 8067760 CNV Gain+Loss Sharp et al 2005 15918152 BAC_aCGH,FISH Eichler Segmental Duplication BAC array nssv550914,nssv549338,nssv549325,nssv550563,nssv549333,nssv549320,nssv549313,nssv550912,nssv549334,nssv551050,nssv550907,nssv551060,nssv550909,nssv550932,nssv550930,nssv549321,nssv551045,nssv549341,nssv551046,nssv551059,nssv550923,nssv550926,nssv549322,nssv549343,nssv549316,nssv549346,nssv550557,nssv549328,nssv550931,nssv550560,nssv549342,nssv550913,nssv550925,nssv550918,nssv551053,nssv549317,nssv550939,nssv550936,nssv551058,nssv551052,nssv550921,nssv550933,nssv550908,nssv549314,nssv550562,nssv551054,nssv550561,nssv550917,nssv550934,nssv550556,nssv549329,nssv551047,nssv550937,nssv550569,nssv551056,nssv549327,nssv550566,nssv549318,nssv549324,nssv549337,nssv549345,nssv549347,nssv550564,nssv550922,nssv551049,nssv549312,nssv550938,nssv550935,nssv551048,nssv550928,nssv549339,nssv549349,nssv551064,nssv551044,nssv550916,nssv551063,nssv549332,nssv550568,nssv549344,nssv550565,nssv550924,nssv550911,nssv550910,nssv550915,nssv550929,nssv549335,nssv549326,nssv549331,nssv551055,nssv549330,nssv550940,nssv551065,nssv550927,nssv551051,nssv550920,nssv550919,nssv549315,nssv549348,nssv549340,nssv550559,nssv549323,nssv551057,nssv550558,nssv551061,nssv549336,nssv550567,nssv551062,nssv549319 M 48 13 29 "" JK1051,JK1058,JK1061,JK1688,NA10469,NA10471,NA10472,NA10473,NA10492,NA10494,NA10495,NA10496,NA10967,NA10969,NA10970,NA10971,NA10976,NA10979,NA11323,NA11521,NA11523,NA11776,NA15724,NA15725,NA15726,NA15727,NA15728,NA15729,NA15730,NA15731,NA15732,NA15733,NA16688,NA16689,NA17014,NA17015,NA17016,NA17017,NA17020,NA17051,NA17059 nsv471459 8 7776324 7777590 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548340,nssv548339,nssv548338 M 3 "" nsv471477 8 7789060 7825000 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548383,nssv548384 M 3 "" nsv438034 8 7814659 7824363 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv469672,nssv469670,nssv469673,nssv469671,nssv469668,nssv469669 M 269 0 6 Samples from several populations that are part of the HapMap project. "" NA10854,NA10863,NA11839,NA12234,NA12801,NA12813 nsv469790 8 7873150 8024984 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649811 M 265 0 10 Samples from several populations that are part of the HapMap project. "" essv20225 8 7873151 8024993 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12144 nsv442400 8 7891705 7903572 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv6070 8 7913216 7920737 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10608,nssv5056 M 9 2 0 "" NA18956,NA19129 nsv469850 8 7917017 8067760 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649871 M 265 25 34 Samples from several populations that are part of the HapMap project. "" essv21038 8 7942417 8344153 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA06991 nsv8282 8 7950711 7966509 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16996,nssv18792,nssv20054,nssv19523,nssv17888,nssv19341 M 31 3 3 Samples from several populations that are part of the HapMap project. "" NA12155,NA18502,NA18517,NA18552,NA18860,NA18972 nsv510126 8 8018484 8024484 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622152 S 4 0 1 "" NA10860 nsv8283 8 8079382 8084898 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16055 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA10847 esv34195 8 8103381 11908066 OTHER Inversion Giglio et al 2002 12058347 FISH Not Provided "" S 7 "" esv34576 8 8106541 8183341 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6980256,essv6980258,essv6980257 M 771 1 0 "" NA06991 dgv863n27 8 8131816 8182850 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv465447,nsv465444,nsv465446,nsv465443,nsv465445,nsv465442,nsv465441,nsv465440 M 1557 8 0 "" 1780862274_A,1782681176_A,1782681555_A,HGDP00512,HGDP01077,HGDP01362,NINDS_152,NINDS_37 nsv818593 8 8135489 8182850 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417893,nssv1417882 M 112 2 0 "" NA06991,NA06993 nsv521240 8 8146665 8200653 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697863 S 2026 0 1 "" nsv8284 8 8191773 8194098 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19167 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19132 nsv831227 8 8242248 8404570 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446902,nssv1446904,nssv1446903,nssv1446901 M 95 1 3 "" nsv396756 8 8242880 8242929 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415334 M 24 "" esv33394 8 8267345 8269930 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99459 S 51 0 1 "" 22335 nsv396240 8 8282481 8282556 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv414818 M 24 "" esv33063 8 8284466 8286644 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100740 S 51 1 0 "" 21656 nsv465449 8 8300307 8400120 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541245 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00952 nsv6071 8 8306854 8341730 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8463 S 9 0 1 "" NA12156 nsv465451 8 8310453 8348708 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541247 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00547 nsv507440 8 8316537 8322537 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620404,nssv623028 M 4 2 0 "" NA15510,NA18994 nsv8285 8 8322712 8328617 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15940 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA12802 nsv510127 8 8323324 8329324 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618281 S 4 0 1 "" CHM nsv442093 8 8324455 8328763 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" esv33200 8 8324675 8327544 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99104 S 51 0 1 "" 21938 nsv519143 8 8333481 8365511 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696621 S 2026 0 1 "" nsv396608 8 8345579 8345579 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415186 M 24 "" nsv398400 8 8345735 8345735 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416978 M 24 "" dgv864n27 8 8350420 8488171 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv465456,nsv465454,nsv465455,nsv465457,nsv465452 M 1557 0 5 "" HGDP00112,HGDP00946,HGDP00967,HGDP01215,HGDP01234 nsv518525 8 8356260 8363163 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695968 S 2026 0 1 "" dgv2196e1 8 8375229 8448555 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv8582,esv996,esv1200 M 271 0 0 "" NA19130 nsv465458 8 8378515 8453220 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541253 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00559 nsv471721 8 8422947 8424304 CNV Loss Hinds et al 2006 16327809 Oligo_aCGH,PCR Custom Perlegen arrays nssv646002 M 0.890 95 "" nsv6072 8 8451973 8478066 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8464 S 9 0 1 "" NA12156 nsv517023 8 8610918 8623426 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv691282,nssv658104,nssv667113,nssv665110,nssv667999,nssv659064,nssv661115,nssv682122,nssv692589,nssv670768,nssv681292,nssv653633,nssv666604,nssv663790,nssv657177 M 2026 0 15 "" nsv818594 8 8620519 8623426 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416253,nssv1416252 M 112 0 2 "" NA10851,NA12056 nsv831228 8 8645797 8828200 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446905 S 95 0 1 "" dgv2197e1 8 8745049 8785304 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv879,esv1144,essv2736 M 271 0 0 "" NA18965 nsv818595 8 8750305 8790094 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417499 S 112 1 0 "" NA18965 nsv831229 8 8788933 8963645 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446908,nssv1446907 M 95 1 1 "" nsv526931 8 8802575 8804291 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703298 S 2026 0 1 "" nsv509250 8 8971359 9021352 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623528 S 4 1 0 "" NA18994 nsv518456 8 8976535 8985879 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695892 S 2026 0 1 "" dgv446n21 8 8981717 9019806 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv523098,nsv526092 M 2026 0 2 "" nsv507441 8 9009496 9015496 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617760,nssv621903 M 4 2 0 "" CHM,NA10860 nsv397048 8 9022289 9023686 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415626 M 24 "" nsv437042 8 9086791 9108383 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv466923 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA12752 dgv2198e1 8 9091324 9108239 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv950,esv1266,essv24029 M 271 0 0 "" NA12873 nsv8286 8 9092364 9100858 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16804 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA10839 nsv516730 8 9093118 9105237 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv659182,nssv668369,nssv676459,nssv664074,nssv668781,nssv684123,nssv678564,nssv690748,nssv691041,nssv658796,nssv653419,nssv685528,nssv666490,nssv671562,nssv666685,nssv685610,nssv659045,nssv670831,nssv661129,nssv652300,nssv681661,nssv680569,nssv657193,nssv693588,nssv662551,nssv652993,nssv672581,nssv692415,nssv665061,nssv677182,nssv653170,nssv670925,nssv673460,nssv684496,nssv693866,nssv685451,nssv705523 M 2026 0 37 "" nsv442094 8 9093876 9099936 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv526262 8 9171208 9188647 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702534 S 2026 0 1 "" nsv526001 8 9202136 9205275 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702227 S 2026 0 1 "" nsv6073 8 9227210 9272151 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8465 S 9 0 1 "" NA12156 nsv465459 8 9266173 9279967 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541254 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00783 nsv523921 8 9317221 9319876 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699764 S 2026 0 1 "" nsv518507 8 9327466 9335757 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695948 S 2026 0 1 "" nsv515989 8 9352194 9353217 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv690709,nssv665601,nssv659515,nssv657855,nssv672038,nssv693753,nssv656717 M 2026 0 7 "" nsv524879 8 9352194 9359190 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700885 S 2026 0 1 "" nsv6074 8 9502327 9537164 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3625 S 9 1 0 "" NA12878 nsv437043 8 9531111 9538857 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv466924 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA10846 nsv438035 8 9537015 9537654 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv469679,nssv469676,nssv469677,nssv469680,nssv469678,nssv469675 M 269 0 6 Samples from several populations that are part of the HapMap project. "" NA18558,NA18562,NA18944,NA18949,NA18959,NA18981 nsv6075 8 9641067 9674878 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5058 S 9 1 0 "" NA19129 nsv509251 8 9664916 9681345 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620902,nssv619521 M 4 2 0 "" NA10860,NA15510 nsv396276 8 9725978 9726028 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv414854 M 24 "" nsv397932 8 9726058 9726108 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416510 M 24 "" nsv520485 8 9755688 9767349 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697447 S 2026 0 1 "" nsv526932 8 9782060 9782762 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703299 S 2026 0 1 "" nsv831230 8 9990753 10176760 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446910,nssv1446909 M 95 1 1 "" nsv510128 8 9994541 10000541 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624055,nssv618282,nssv621328 M 4 0 3 "" CHM,NA15510,NA18994 nsv831231 8 10038624 10226504 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446911 S 95 1 0 "" nsv516061 8 10082523 10082861 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv658112,nssv665941 M 2026 0 2 "" nsv6078 8 10185168 10220341 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3626 S 9 1 0 "" NA12878 nsv518309 8 10193435 10197395 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694224 S 2026 0 1 "" nsv527326 8 10236958 10357429 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703751 S 2026 1 0 "" nsv818596 8 10372104 10372191 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416648 S 112 1 0 "" NA19116 nsv465462 8 10455449 10481547 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541256 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00971 nsv527445 8 10501616 10503892 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703886 S 2026 0 1 "" nsv523113 8 10519782 10523232 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698812 S 2026 0 1 "" nsv515898 8 10567447 10594817 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv677779,nssv665187 M 2026 0 2 "" nsv527184 8 10567447 10627323 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703580 S 2026 0 1 "" nsv398183 8 10569314 10569397 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416761 M 24 "" dgv865n27 8 10573236 10605040 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv465464,nsv465463 M 1557 0 2 "" 1780854535_A,HGDP00515 nsv519236 8 10594817 10602673 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696727 S 2026 0 1 "" dgv447n21 8 10637664 10729403 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv519376,nsv519768 M 2026 2 0 "" nsv831232 8 10643463 10812358 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446913,nssv1446912 M 95 0 2 "" nsv522226 8 10666357 10672727 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695003 S 2026 0 1 "" nsv508497 8 10718031 10787665 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622591 S 4 0 1 "" NA18994 nsv515946 8 10726901 10729403 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv676363,nssv667040,nssv665403 M 2026 3 0 "" nsv396674 8 10728469 10728594 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415252 M 24 "" nsv522127 8 10835241 10852925 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694901 S 2026 0 1 "" nsv521721 8 10839512 10873882 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694481 S 2026 0 1 "" dgv448n21 8 10841027 10854283 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv518360,nsv519822 M 2026 0 3 "" nsv516033 8 11025685 11032470 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv672434,nssv696486,nssv675573,nssv685502,nssv661798,nssv659548,nssv674811,nssv678931,nssv668030,nssv688056,nssv657372,nssv665830,nssv690422 M 2026 0 13 "" nsv519941 8 11054299 11077226 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697138 S 2026 0 1 "" nsv397981 8 11055322 11055831 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416559 M 24 "" nsv831233 8 11084264 11271794 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446914 S 95 1 0 "" esv33097 8 11271992 11272081 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101534,essv100717,essv96930,essv99006,essv98011 M 51 5 0 "" 21603,21656,21817,21938,22259 esv33920 8 11272218 11284367 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101610,essv97003,essv98019,essv98374,essv96404 M 51 0 5 "" 21603,21817,22259,22352,22371 nsv465465 8 11282474 11344528 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541259 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01317 nsv398266 8 11282969 11284617 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416844 M 24 "" nsv522860 8 11291289 11367774 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698515 S 2026 0 1 "" nsv509252 8 11314755 11376148 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620903 S 4 1 0 "" NA15510 nsv520117 8 11429059 11466556 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697231 S 2026 1 0 "" dgv866n27 8 11429059 11467894 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv465466,nsv465467 M 1557 2 0 "" HGDP00883,HGDP00889 nsv397436 8 11430244 11438188 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416014 M 24 "" nsv523827 8 11445810 11523629 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699658 S 2026 1 0 "" nsv6079 8 11601566 11610455 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8466 S 9 0 1 "" NA12156 nsv471715 8 11634244 11634783 CNV Loss Hinds et al 2006 16327809 Oligo_aCGH,PCR Custom Perlegen arrays nssv645996 M 0.107 95 "" nsv525089 8 11728551 11730250 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701147 S 2026 0 1 "" nsv516685 8 11736156 12614570 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699244,nssv682075,nssv670182,nssv694438,nssv702607,nssv661211,nssv702962,nssv663225,nssv664884,nssv690582,nssv661799,nssv653353,nssv681564,nssv669415,nssv661505,nssv704213 M 2026 6 10 "" dgv2199e1 8 11778967 12634940 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv15252,essv5832,essv4103,essv21590,essv17851,essv19823,essv16391,essv22712,essv11122,essv8564,essv10926,essv16141,essv11403,essv13128,essv9546,essv11291,essv24441,essv13408,essv15705,essv610,essv19892,essv20549,essv12887 M 271 0 0 "" NA10847,NA10857,NA11881,NA11995,NA12155,NA12239,NA12865,NA18502,NA18503,NA18524,NA18529,NA18859,NA18861,NA18863,NA18872,NA18912,NA18947,NA19094,NA19100,NA19172,NA19192,NA19209,NA19211 dgv2200e1 8 11778967 12646342 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv3001,essv13756,essv9641,essv14465,esv586,esv531 M 271 0 0 "" NA18981,NA19141,NA19153,NA19201 essv15113 8 11819907 12078007 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19129 nsv465468 8 11855773 11935618 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541262 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01351 nsv6080 8 11888274 11922905 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv718,nssv1719,nssv3627,nssv5060,nssv6203 M 9 5 0 "" NA12156,NA12878,NA18555,NA19129,NA19240 esv33396 8 11891058 11891595 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv96911 S 51 0 1 "" 21817 dgv27n31 8 11898231 12097364 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis nsv471482,nsv471480,nsv471476,nsv471341 M 3 "" nsv8287 8 11902919 11913153 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19553,nssv17918,nssv17026 M 31 1 2 Samples from several populations that are part of the HapMap project. "" NA12155,NA18552,NA18972 nsv818597 8 11929002 11935618 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415761,nssv1415772 M 112 0 2 "" NA19140,NA19142 dgv2201e1 8 11930637 12040126 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv9485,essv11346,essv1990 M 271 0 0 "" NA18942,NA19128,NA19154 dgv2202e1 8 11933744 12291512 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv21569,essv18486,essv18526,essv17397,essv5664,essv2127 M 271 0 0 "" NA12146,NA12156,NA12763,NA18605,NA18855,NA18959 dgv244e55 8 11941938 12646342 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv2752197,esv2752196,esv2752198,esv2752199 M 771 4 0 "" BEC_309,BEC_375,BEC_445,BEC_636 nsv8288 8 11982232 12571056 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17056,nssv18882,nssv20144,nssv17206,nssv17548,nssv19333,nssv20940,nssv17448,nssv16115,nssv20790,nssv16314,nssv18271,nssv17145,nssv19733,nssv16802,nssv16175,nssv16834,nssv16640,nssv17257,nssv16145,nssv15461,nssv16864,nssv19257,nssv17729,nssv16009,nssv17283,nssv16000,nssv17146,nssv19287,nssv16192,nssv16730,nssv17436,nssv17789,nssv17829,nssv17578,nssv19793,nssv18008,nssv18038,nssv16700,nssv19703,nssv20820,nssv16222,nssv19883,nssv16030,nssv15970,nssv17948,nssv17388,nssv16404,nssv16915,nssv17358,nssv17116,nssv17227,nssv18852,nssv15979,nssv19303,nssv16284,nssv17115,nssv18421,nssv17313,nssv18301,nssv19371,nssv16162,nssv18822,nssv16885,nssv17879,nssv16376,nssv18481,nssv17298,nssv19823,nssv15919,nssv20114,nssv17978,nssv19673,nssv16254,nssv20880,nssv18391,nssv20910,nssv18361,nssv17819,nssv19583,nssv17253,nssv16670,nssv17167,nssv15949,nssv18331,nssv20850,nssv17849,nssv18241,nssv16894,nssv19227,nssv19613,nssv19197,nssv15401,nssv16607,nssv17328,nssv19243,nssv19273,nssv16924,nssv17638,nssv17197,nssv17236,nssv16224,nssv19317,nssv16346,nssv19853,nssv19643,nssv17268,nssv16374,nssv16855,nssv19213,nssv17799,nssv17176,nssv20174,nssv16772,nssv17466,nssv16344,nssv17608 M 31 29 15 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10847,NA10863,NA11830,NA12155,NA12740,NA12802,NA12872,NA18502,NA18504,NA18517,NA18537,NA18552,NA18563,NA18564,NA18572,NA18853,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19144,NA19173,NA19221,NA19240 nsv471461 8 11984256 12010434 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548341,nssv548343,nssv548342 M 3 "" dgv2203e1 8 12011451 12537556 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv18673,essv2553,essv1056,essv22164,essv2951,essv1663,essv1568,essv19057,essv7350,essv3601,essv7977,essv3088,essv11477,essv6215,essv21936,essv5999,essv740,essv4319,essv6427,essv14751,essv14166,essv8263,essv22919,essv3567,essv20858,essv7244,essv6499,essv19473,essv25179,essv10652,essv11365,essv7896,essv24630,essv9896,essv7650,essv23804,essv7639,essv14211,essv13257,essv706,essv11610,essv5627,essv5983,essv8361,essv24020,essv8748,essv15178,essv6110,essv1709,essv20458 M 271 0 0 "" NA06994,NA10846,NA10857,NA11829,NA11830,NA11840,NA12056,NA12057,NA12750,NA12760,NA12763,NA12873,NA18504,NA18547,NA18552,NA18563,NA18564,NA18570,NA18571,NA18573,NA18579,NA18592,NA18632,NA18635,NA18636,NA18855,NA18856,NA18858,NA18913,NA18940,NA18968,NA18969,NA18972,NA18974,NA18975,NA18987,NA18992,NA18997,NA19003,NA19092,NA19140,NA19145,NA19153,NA19159,NA19201,NA19207,NA19239,NA19240 dgv2204e1 8 12011451 12632654 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv17474,essv25137,essv951,essv11253,essv5588,essv5013,essv22997,essv24133,essv9750,essv18906,essv7052,essv6649,essv19449,essv6460,essv23990,essv5071,essv19544,essv6929,essv23150 M 271 0 0 "" NA07357,NA10831,NA10847,NA11839,NA11840,NA12716,NA12717,NA12762,NA12864,NA18529,NA18570,NA18571,NA18608,NA18612,NA18637,NA18863,NA18981,NA19204 nsv442420 8 12025135 12039385 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv2205e1 8 12025186 12040126 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv15438,essv1315,essv6846 M 271 0 0 "" NA18558,NA18973,NA19206 dgv2206e1 8 12025186 12291610 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv22288,essv14018,essv2700,essv3852,essv19125 M 271 0 0 "" NA12044,NA12762,NA18944,NA18953,NA19222 nsv471462 8 12032086 12033678 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548345,nssv548346,nssv548347 M 3 "" esv33245 8 12077360 12264641 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97475,essv96900,essv99009 M 51 3 0 "" 21616,21817,21938 nsv821657 8 12090806 12549242 CNV Loss Sebat_et_al_2004 15273396 ROMA Custom Nimblegen photoprint 85000 probe ROMA oligo array nssv1421212 S 31 0 1 "" nsv831234 8 12199767 12359202 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446915 S 95 0 1 "" dgv2207e1 8 12233358 12611672 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv18494,essv21069,essv17749,essv12130,essv13825,essv11909 M 271 0 0 "" NA06991,NA10831,NA12156,NA18502,NA18853,NA19173 nsv469553 8 12242060 12399265 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649664 M 265 0 27 Samples from several populations that are part of the HapMap project. "" nsv471652 8 12242061 12399265 CNV Gain+Loss Sharp et al 2005 15918152 BAC_aCGH,FISH Eichler Segmental Duplication BAC array nssv549155,nssv549157,nssv549154,nssv549156,nssv549158,nssv549159,nssv549160 M 48 5 2 "" JK1058,JK1061,NA10469,NA10471,NA10492,NA15725,NA16688 nsv442421 8 12260380 12286526 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv2208e1 8 12264620 12291610 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv6413,essv18035,essv24333,essv6543,essv7451,essv13349,essv19028 M 271 0 0 "" NA06993,NA07034,NA11882,NA18500,NA18545,NA18582,NA18624 dgv2209e1 8 12264620 12487533 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv19358,essv9971,essv20818,essv2152,essv1310,essv12907,essv20760,essv12040,essv20725,essv21749,essv3934,essv21473,essv6080,essv16622,essv5605,essv8015,essv21493,essv18021,essv1334,essv25060,essv18005,essv1647,essv2751,essv23110,essv1795,essv14945 M 271 0 0 "" NA06985,NA10830,NA10855,NA10861,NA12003,NA12005,NA12043,NA12146,NA12752,NA12878,NA12892,NA18522,NA18593,NA18621,NA18871,NA18961,NA18965,NA18970,NA18971,NA18973,NA18978,NA18980,NA19116,NA19132,NA19204,NA19208 dgv245e55 8 12264620 12487533 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv2752200,esv2752203,esv2752204,esv2752205 M 771 4 0 "" BEC_354,BEC_556,BEC_589,BEC_596 dgv2210e1 8 12264620 12522182 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv15975,essv8591,essv21638,essv25056,essv18795 M 271 0 0 "" NA12761,NA12801,NA12891,NA19130,NA19142 dgv246e55 8 12264620 12630632 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv2752206,esv2752202,esv2752201 M 771 3 0 "" BEC_425,BEC_567,SPC_189 nsv831235 8 12275678 12452720 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446916,nssv1446918,nssv1446920,nssv1446921,nssv1446919 M 95 0 5 "" esv32998 8 12275909 12285493 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101511,essv97487,essv100700,essv99087,essv98013,essv99442,essv98494 M 51 4 3 "" 21603,21616,21656,21938,22259,22335,22352 nsv438036 8 12276030 12291924 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv469688,nssv469684,nssv469682,nssv469687,nssv469686,nssv469683,nssv469681,nssv469689 M 269 0 4 Samples from several populations that are part of the HapMap project. "" NA06991,NA06993,NA07034,NA07048 dgv140n17 8 12280185 12360133 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437046,nsv437045 M 60 0 2 "" NA06991,NA07048 dgv2211e1 8 12284241 12291610 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv15939,essv12444,essv2713,essv1001 M 271 0 0 "" NA18515,NA18944,NA18964,NA19152 nsv831236 8 12321285 12557354 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446922,nssv1446923,nssv1446924 M 95 0 3 "" nsv471463 8 12327497 12338223 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548350,nssv548348,nssv548349 M 3 "" nsv482121 8 12327497 12338223 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558482 S 1 1 0 "" KB1 nsv831238 8 12348420 12511915 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446927,nssv1446925,nssv1446932,nssv1446930,nssv1446929,nssv1446933,nssv1446931,nssv1446926,nssv1446934 M 95 0 9 "" nsv469548 8 12357608 12470366 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649658 M 265 1 2 Samples from several populations that are part of the HapMap project. "" nsv6081 8 12397410 12414457 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1720 S 9 0 1 "" NA18555 nsv6082 8 12421549 12456890 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1721 S 9 0 1 "" NA18555 dgv2212e1 8 12433487 12646342 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv6990,essv25114,essv8495,essv16078,essv10282 M 271 0 0 "" NA10856,NA18501,NA18506,NA18612,NA18854 essv3645 8 12446597 12466379 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18991 dgv2213e1 8 12446597 12537556 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv9304,essv11323 M 271 0 0 "" NA18852,NA19128 dgv2214e1 8 12466379 12575194 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv15926,essv13371 M 271 0 0 "" NA19159,NA19205 nsv6083 8 12487468 12522125 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2780 S 9 1 0 "" NA18555 essv10605 8 12517929 12575194 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19211 nsv438038 8 12590009 12599114 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv469691,nssv469690 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA18561,NA18621 nsv442096 8 12593598 12597159 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv818598 8 12595527 12614570 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417380 S 112 0 1 "" NA18949 nsv8289 8 12599098 12604716 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16406 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19007 esv2750483 8 12676052 12677876 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99484 S 51 0 1 "" 22335 esv33493 8 12680729 12688903 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101449 S 51 0 1 "" 21603 nsv442436 8 12693099 12696897 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" esv32567 8 12696881 12696948 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97017 S 51 0 1 "" 21817 nsv524268 8 12748013 12750501 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700166 S 2026 1 0 "" nsv465469 8 12851432 12940151 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541263 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01172 dgv2215e1 8 12883370 12926648 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1267,essv5781,esv1341 M 271 0 0 "" NA18540 nsv6084 8 13035991 13071333 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv719 S 9 1 0 "" NA19240 nsv8290 8 13135929 13579158 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17266,nssv16637 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA18552,NA18563 nsv521822 8 13162104 13164703 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694594 S 2026 0 1 "" nsv516894 8 13225184 13231736 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv655765,nssv654740 M 2026 2 0 "" nsv516452 8 13246509 13247210 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv684305,nssv673697,nssv662442,nssv668482,nssv677075 M 2026 0 5 "" esv2752209 8 13269177 13362620 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6989418,essv6984200 M 771 0 1 "" BEC_8 nsv465470 8 13305156 13325331 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541264 S 1557 0 1 "" NINDS_166 nsv465471 8 13311724 13325331 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541265 S 1557 0 1 "" 1780854576_A nsv6085 8 13340300 13360557 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3629 S 9 1 0 "" NA12878 nsv397643 8 13355290 13355371 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416221 M 24 "" nsv397741 8 13355340 13355438 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416319 M 24 "" nsv465473 8 13397564 13425962 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541267 S 1557 0 1 "" 1780854279_A nsv517019 8 13413432 14702986 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv653610,nssv652793,nssv688918,nssv659444,nssv661457,nssv690055,nssv671862,nssv657433,nssv669676,nssv659970,nssv690358,nssv667480,nssv670500,nssv691927,nssv662224,nssv670131,nssv666805,nssv688802,nssv664716,nssv680864,nssv693821,nssv657448,nssv693922,nssv697238,nssv660702,nssv672750,nssv673913,nssv675652,nssv662785,nssv664176,nssv685572,nssv661889,nssv659582,nssv684086,nssv664177,nssv665141,nssv684703,nssv704094,nssv681793,nssv667987,nssv658632,nssv656816,nssv665641,nssv698201,nssv674883,nssv706019,nssv690806,nssv705781,nssv652678,nssv666357,nssv668462,nssv665370,nssv655416,nssv653177,nssv655595,nssv687948,nssv675244,nssv653589,nssv659445,nssv666575,nssv691134,nssv683765,nssv676948,nssv676288,nssv680945,nssv678024,nssv692724,nssv657286,nssv672096,nssv686235,nssv675273,nssv674488,nssv659644,nssv680403,nssv694963,nssv665001,nssv676329,nssv651757,nssv653524,nssv674430,nssv663313,nssv660001,nssv676702,nssv681095,nssv692954,nssv666060,nssv673545,nssv663911,nssv678654,nssv684307,nssv681398,nssv658687,nssv666861,nssv683658,nssv671138,nssv657569,nssv653711,nssv682408,nssv670521,nssv653806,nssv662348,nssv658986,nssv665981,nssv691561,nssv659119,nssv653557,nssv658701,nssv657628,nssv662335,nssv687970,nssv667988,nssv674727,nssv678284,nssv687038,nssv683816,nssv688945,nssv673814,nssv701353,nssv652210,nssv662478,nssv679482,nssv657266,nssv667587,nssv664070,nssv695465,nssv676189,nssv674445,nssv666838,nssv692338,nssv671160,nssv668980,nssv676331,nssv675189,nssv654487,nssv688274,nssv670185,nssv685854,nssv659079,nssv676064,nssv677760,nssv662035,nssv661089,nssv694268,nssv681983,nssv694811,nssv691860,nssv661730,nssv664663,nssv678956,nssv683215,nssv665002,nssv667762,nssv653520,nssv669875,nssv663592,nssv684773,nssv695521,nssv672515,nssv660550,nssv653652,nssv653198,nssv665814,nssv664600,nssv696026,nssv654042,nssv691279,nssv686325,nssv653509,nssv655698,nssv674324,nssv689226,nssv696647,nssv692997,nssv677684,nssv658237,nssv673231,nssv682407,nssv692570,nssv663138,nssv679657,nssv657601,nssv675458,nssv685390,nssv661630,nssv675286,nssv659233,nssv703525,nssv675684,nssv686654,nssv686236,nssv671247,nssv677039,nssv664017,nssv659861,nssv668068,nssv673610,nssv664150,nssv682747,nssv682363,nssv664935,nssv690824,nssv690024,nssv697095,nssv655596,nssv662064,nssv676949,nssv676495,nssv685320,nssv689529,nssv659028,nssv659344,nssv661949,nssv689930,nssv690875,nssv688676,nssv690275,nssv692038,nssv677885,nssv667272,nssv686120,nssv673740,nssv674184,nssv654335,nssv677434,nssv685217,nssv664052,nssv668067,nssv674516,nssv681615,nssv661309,nssv677008,nssv657307,nssv661800,nssv686282,nssv664071,nssv671655,nssv660314,nssv689347,nssv658272,nssv680527,nssv692998,nssv667479,nssv664462,nssv660605,nssv678059,nssv681542,nssv676125,nssv684245,nssv684306,nssv679288,nssv656464,nssv657796,nssv687733,nssv703076,nssv666932,nssv666086,nssv654024 M 2026 3 254 "" nsv465474 8 13446836 13467550 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541268 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00472 nsv510129 8 13480113 13486113 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618283,nssv622153 M 4 0 2 "" CHM,NA10860 nsv465475 8 13519649 13571092 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541269 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00080 nsv831239 8 13532371 13716139 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446935 S 95 1 0 "" nsv465476 8 13569173 13580540 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541270 S 1557 0 1 "" 1788485381_A nsv396518 8 13576192 13576293 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415096 M 24 "" dgv2216e1 8 13581607 13896999 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv549,essv7771,esv565 M 271 0 0 "" NA18542 essv14210 8 13584750 13693864 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18913 nsv8292 8 13604028 13607649 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16466 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19007 nsv8293 8 13616575 13618443 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17287 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA11830 esv35045 8 13631654 13678755 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6980004,essv6980003,essv6988290 M 771 0 1 "" NA18913 dgv2217e1 8 13631654 13711639 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv10705,essv8525,essv9965,essv9001,essv11598,essv11412,essv13822,essv8506,essv9502,essv8552 M 271 0 0 "" NA18503,NA18508,NA18521,NA18523,NA18853,NA18854,NA19192,NA19194,NA19204,NA19207 nsv397203 8 13638836 13638999 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415781 M 24 "" nsv818599 8 13641801 13772865 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417142 S 112 0 1 "" NA18542 dgv247e55 8 13642500 13772900 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv2752210,esv34982 M 771 0 2 "" BEC_191,NA18542 essv5435 8 13642515 13781886 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18542 nsv437598 8 13643395 13655257 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467479 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18521 nsv442440 8 13643472 13644762 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv867n27 8 13643548 13655102 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv465481,nsv465482,nsv465492,nsv465495,nsv465479,nsv465478,nsv465480,nsv465496,nsv465486,nsv465497,nsv465484,nsv465487,nsv465490,nsv465493,nsv465489,nsv465485,nsv465491,nsv465477,nsv465488 M 1557 0 19 "" HGDP00013,HGDP00060,HGDP00459,HGDP00460,HGDP00640,HGDP00865,HGDP00905,HGDP00909,HGDP00920,HGDP00926,HGDP00932,HGDP00935,HGDP00942,HGDP01028,HGDP01033,HGDP01270,HGDP01274,HGDP01417,HGDP01418 nsv818601 8 13643825 13653134 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416566,nssv1415784,nssv1417888,nssv1416567,nssv1417887 M 112 0 5 "" NA18852,NA18854,NA19140,NA19172,NA19173 nsv8294 8 13644028 13653728 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17909 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19173 nsv465498 8 13648456 13711639 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541292 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01172 dgv141n17 8 13657264 13700280 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437604,nsv437603,nsv437600,nsv437599,nsv437601 M 60 0 5 "" NA18503,NA18521,NA18854,NA19094,NA19194 nsv465499 8 13657581 13670412 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541293 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00931 nsv8295 8 13658432 13695869 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16790,nssv18912,nssv19363 M 31 0 3 Samples from several populations that are part of the HapMap project. "" NA18502,NA18504,NA18853 nsv442445 8 13659088 13696077 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv868n27 8 13659506 13680110 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv465501,nsv465500,nsv465502 M 1557 0 3 "" 1798860047_A,HGDP00911,HGDP00937 nsv438039 8 13659506 13693201 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv469692,nssv469699,nssv469701,nssv469700,nssv469693,nssv469695,nssv469702,nssv469697,nssv469694,nssv469698 M 269 0 7 Samples from several populations that are part of the HapMap project. "" NA18503,NA18505,NA18521,NA18522,NA19092,NA19094,NA19205 nsv433244 8 13659506 13694172 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463125 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA19129 nsv818602 8 13659506 13694172 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416650,nssv1417890,nssv1415795,nssv1417889,nssv1416363,nssv1418293,nssv1418294,nssv1416651,nssv1418475,nssv1418476 M 112 0 10 "" NA18853,NA18854,NA18856,NA19092,NA19094,NA19119,NA19120,NA19141,NA19192,NA19194 dgv2218e1 8 13659506 13698354 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv12004,essv7946,essv10964,essv14913,essv14847,essv11390,essv12428,essv7920,essv14242,essv12904,essv11466,essv15920,essv15189,essv13972 M 271 0 0 "" NA18504,NA18522,NA18856,NA19092,NA19098,NA19100,NA19119,NA19127,NA19129,NA19141,NA19152,NA19203,NA19205,NA19209 dgv869n27 8 13659506 13701332 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv465509,nsv465507,nsv465516,nsv465503,nsv465510,nsv465515,nsv465508,nsv465504,nsv465513,nsv465511,nsv465512,nsv465514 M 1557 0 12 "" HGDP00161,HGDP00450,HGDP00458,HGDP00478,HGDP00906,HGDP00913,HGDP00928,HGDP00933,HGDP00994,HGDP01086,HGDP01271,HGDP01283 dgv2219e1 8 13659506 13722323 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv13247,essv12939,essv12886 M 271 0 0 "" NA18502,NA19094,NA19131 nsv465518 8 13670187 13694172 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541312 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01031 nsv395928 8 13675570 13678936 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv414506 M 24 "" nsv442097 8 13720460 13740957 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv465520 8 13721790 13740397 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541313 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01414 nsv396273 8 13781260 13788278 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv414851 M 24 "" nsv397294 8 13830748 13831384 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415872 M 24 "" nsv465521 8 13834782 13852041 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541314 S 1557 0 1 "" NINDS_145 nsv442448 8 13854600 13859608 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv465523 8 13928400 13948127 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541315 S 1557 0 1 "" NINDS_222 esv32769 8 13937798 13937960 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100697 S 51 0 1 "" 21656 nsv465524 8 13939562 14017836 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541316 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01270 nsv510130 8 13964466 13970466 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624056,nssv618284 M 4 0 2 "" CHM,NA18994 nsv396791 8 14003445 14003445 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415369 M 24 "" dgv870n27 8 14160810 14176825 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv465526,nsv465525 M 1557 0 2 "" 1780854491_A,HGDP00732 dgv871n27 8 14183678 14205409 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv465529,nsv465530 M 1557 0 2 "" HGDP01102,NINDS_89 nsv818603 8 14230075 14232324 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415905,nssv1415907 M 112 2 0 "" NA10861,NA11995 nsv507442 8 14298028 14304028 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621904 S 4 1 0 "" NA10860 dgv2220e1 8 14300858 14321648 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv9853,essv14663,esv1265,esv1105 M 271 0 0 "" NA19144,NA19145 nsv8296 8 14302768 14319307 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17668 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19144 esv35026 8 14303000 14317600 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6987878,essv6980924 M 771 0 1 "" NA19144 nsv818604 8 14307990 14317771 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418164,nssv1418165 M 112 0 2 "" NA19144,NA19145 nsv8297 8 14321823 14329349 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18511 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19240 nsv465531 8 14406609 14698487 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541322 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00631 dgv872n27 8 14417798 14432464 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv465532,nsv465533 M 1557 0 2 "" NINDS_27,NINDS_99 nsv465535 8 14509464 14510052 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541325 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01246 nsv6086 8 14525015 14565465 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5061 S 9 0 1 "" NA19129 dgv2221e1 8 14549778 14559616 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1318,essv14902,esv956 M 271 0 0 "" NA19129 nsv433245 8 14551152 14558151 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463126 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA19129 nsv442098 8 14553275 14559579 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv465536 8 14574222 14617946 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541326 S 1557 0 1 "" NINDS_152 nsv465537 8 14611359 14640612 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541327 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00668 nsv437048 8 14617592 14738100 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv466929 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA10863 nsv438040 8 14624539 14630697 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv469709,nssv469713,nssv469716,nssv469711,nssv469708,nssv469704,nssv469710,nssv469715,nssv469714,nssv469703,nssv469705,nssv469706,nssv469712 M 269 0 13 Samples from several populations that are part of the HapMap project. "" NA18507,NA18862,NA18863,NA18912,NA18913,NA18914,NA19102,NA19131,NA19152,NA19171,NA19238,NA19239,NA19240 nsv465538 8 14625719 14645799 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541328 S 1557 0 1 "" NINDS_6 dgv2222e1 8 14670571 15809077 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv18620,esv663,essv19850,essv20975,essv23648,esv677 M 271 0 0 "" NA10863,NA12234 nsv8298 8 14674267 15708103 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18128,nssv19377,nssv19913,nssv17496,nssv19401,nssv15491,nssv20970,nssv19347,nssv16954 M 31 2 7 Samples from several populations that are part of the HapMap project. "" NA10839,NA10863,NA12155,NA12872,NA18860,NA18972,NA19132,NA19221 nsv818605 8 14675272 15704610 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417705,nssv1417716 M 112 0 2 "" NA10863,NA12234 dgv248e55 8 14675298 15708398 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv34616,esv34951 M 771 0 2 "" NA10863,NA12234 nsv438041 8 14681135 15426553 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv469720,nssv469719,nssv469723,nssv469722,nssv469717,nssv469721 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA10863,NA12234 nsv465540 8 14715334 14722890 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541330 S 1557 0 1 "" NINDS_166 nsv524332 8 14719317 14721183 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700238 S 2026 0 1 "" nsv469745 8 14724716 14893465 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649766 M 265 0 15 Samples from several populations that are part of the HapMap project. "" nsv437049 8 14738100 14763878 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv466930 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA10863 nsv465541 8 14740116 14808735 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541331 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01053 nsv437050 8 14763878 14817558 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv466931 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA10863 nsv465542 8 14806163 14816648 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541332 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01330 nsv465543 8 14806562 14813872 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541333 S 1557 0 1 "" 1782681091_A nsv437051 8 14817558 14884772 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv466932 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA10863 nsv518542 8 14824624 14898946 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695986 S 2026 1 0 "" nsv465544 8 14829855 14852281 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541334 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00141 dgv449n21 8 14831731 14840170 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv525237,nsv516095 M 2026 0 23 "" nsv442099 8 14832796 14840174 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv524888 8 14835862 14840170 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700894 S 2026 0 1 "" nsv465545 8 14839288 14853304 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541335 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00127 nsv465546 8 14839288 14866475 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541336 S 1557 0 1 "" 1780854495_A nsv525799 8 14852007 14855604 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701981 S 2026 0 1 "" nsv523294 8 14852007 14870204 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699034 S 2026 0 1 "" nsv465547 8 14858679 14866475 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541337 S 1557 0 1 "" NINDS_174 nsv396378 8 14877691 14877835 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv414956 M 24 "" nsv465548 8 14882160 14895349 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541338 S 1557 0 1 "" NINDS_104 nsv437052 8 14884772 15112351 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv466933 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA10863 nsv520590 8 14887770 14890962 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv678108,nssv689299,nssv694957,nssv672907,nssv689348 M 2026 0 5 "" nsv465549 8 14929488 14947524 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541339 S 1557 0 1 "" NINDS_99 nsv831240 8 14937189 15126039 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446936,nssv1446937 M 95 2 0 "" nsv520906 8 14951669 14955994 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697681 S 2026 1 0 "" nsv519666 8 14965865 14966783 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv657465,nssv686269,nssv679157 M 2026 3 0 "" nsv527437 8 14995266 15001088 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703877 S 2026 0 1 "" dgv241n6 8 15045638 15045970 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv396889,nsv397835 M 24 "" nsv465551 8 15081123 15085068 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541341 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01263 nsv528003 8 15090097 15090196 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704528 S 2026 0 1 "" nsv524304 8 15091385 15095529 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700205 S 2026 0 1 "" nsv516690 8 15092801 15095529 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv671691,nssv685321,nssv657329,nssv670186,nssv661090,nssv661242,nssv682816,nssv702703,nssv680006,nssv693969,nssv678743,nssv678109,nssv658238,nssv693080,nssv692134,nssv685392,nssv679658,nssv682748 M 2026 0 18 "" nsv818606 8 15092801 15095529 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416568 S 112 0 1 "" NA19172 nsv437053 8 15112351 15216360 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv466934 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA10863 nsv524809 8 15133816 15138968 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700801 S 2026 0 1 "" nsv520158 8 15136614 15138968 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv689931,nssv661288 M 2026 0 2 "" nsv527456 8 15152819 15156725 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703898 S 2026 0 1 "" nsv523516 8 15156105 15156725 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699289 S 2026 0 1 "" nsv437054 8 15216360 15258515 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv466935 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA10863 nsv465552 8 15234679 15246864 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541342 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00171 nsv519719 8 15239936 15240823 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv672119,nssv657881,nssv672398 M 2026 0 3 "" nsv517993 8 15281238 15281427 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695406 S 2026 1 0 "" nsv437055 8 15300806 15708708 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv466936 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA10863 nsv522160 8 15309542 15333437 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694934 S 2026 0 1 "" nsv522196 8 15318148 15334490 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694143 S 2026 0 1 "" nsv523060 8 15366667 15367141 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698744 S 2026 0 1 "" nsv518433 8 15366667 15378062 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695867 S 2026 1 0 "" nsv6087 8 15371517 15392348 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv720 S 9 1 0 "" NA19240 nsv510131 8 15419371 15425371 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618285 S 4 0 1 "" CHM nsv517314 8 15432937 15455979 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv671601,nssv661813,nssv682735,nssv673287,nssv692160,nssv678262,nssv678765,nssv687251,nssv678110,nssv669914,nssv693045,nssv685080,nssv660462,nssv691147,nssv667905,nssv654365,nssv656624,nssv669461,nssv656081,nssv685623,nssv656955,nssv688143,nssv684342,nssv674013,nssv655723,nssv671383,nssv689654,nssv679454,nssv669105,nssv660097,nssv661853,nssv664601,nssv679013,nssv693770,nssv675588,nssv674943,nssv686628,nssv673765,nssv682665,nssv651686,nssv658534,nssv658113,nssv690557,nssv684877,nssv653316,nssv670298,nssv663978,nssv659565,nssv680662,nssv663407,nssv681491,nssv678178,nssv659063,nssv674798,nssv672940,nssv676364,nssv654911,nssv689988,nssv691087,nssv652298,nssv676455,nssv683010,nssv671202,nssv672360,nssv666981,nssv669614,nssv688195,nssv677464,nssv677860,nssv681726,nssv657645,nssv665655,nssv661773,nssv652358,nssv680236,nssv676065 M 2026 0 76 "" nsv465554 8 15439515 15455979 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541343 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00274 nsv6089 8 15440864 15467708 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6204 S 9 0 1 "" NA12156 nsv433246 8 15446378 15455979 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463127 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA12156 nsv465555 8 15447307 15455979 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541344 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00157 nsv818607 8 15447307 15455979 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417694,nssv1417288 M 112 0 2 "" NA12264,NA18608 dgv873n27 8 15447307 15471819 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv465557,nsv465556 M 1557 0 2 "" 1782681091_A,HGDP00805 nsv442472 8 15447431 15455977 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv6090 8 15455109 15488724 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3630 S 9 1 0 "" NA12878 nsv510132 8 15461764 15467764 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624058 S 4 0 1 "" NA18994 dgv874n27 8 15464497 15475846 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv465560,nsv465559 M 1557 0 2 "" HGDP00237,HGDP00550 dgv875n27 8 15464497 15475846 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv465562,nsv465563 M 1557 2 0 "" HGDP00619,HGDP00697 nsv517114 8 15464497 15475846 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv691431,nssv684001,nssv691003,nssv660294,nssv652518,nssv675780,nssv678522,nssv664767,nssv653807 M 2026 2 7 "" nsv818608 8 15464497 15475846 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417210 S 112 1 0 "" NA18558 nsv465564 8 15464497 15486984 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541352 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01302 nsv528536 8 15512029 15524009 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705148 S 2026 0 1 "" nsv510978 8 15549187 15611657 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621606 S 4 0 0 "" NA15510 nsv507443 8 15566851 15572851 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623029,nssv617761 M 4 2 0 "" CHM,NA18994 nsv520235 8 15571747 15573561 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv684467,nssv662065 M 2026 0 2 "" nsv516746 8 15644214 15651684 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv670843,nssv670600,nssv691443,nssv689084 M 2026 4 0 "" nsv522161 8 15656974 15657484 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694935 S 2026 0 1 "" nsv438042 8 15656974 15704929 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv469726,nssv469730,nssv469728,nssv469724,nssv469727,nssv469725 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA10863,NA12234 nsv528442 8 15657484 15660060 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705037 S 2026 1 0 "" nsv6091 8 15667725 15713161 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6206 S 9 0 1 "" NA12156 nsv529024 8 15693905 15702024 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705735 S 2026 1 0 "" nsv465565 8 15696490 15701490 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541353 S 1557 0 1 "" NINDS_173 nsv525544 8 15700499 15702127 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701681 S 2026 1 0 "" nsv528537 8 15721604 15723846 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705149 S 2026 0 1 "" nsv465566 8 15742470 15759870 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541354 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01308 nsv465567 8 15742470 15777260 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541355 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01310 nsv8299 8 15815179 15996410 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16205 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA10847 nsv517621 8 15828545 15831260 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv692924,nssv666115,nssv676722,nssv660875,nssv662671,nssv680807,nssv678263,nssv681041,nssv680134,nssv652545,nssv667482,nssv678341,nssv665848,nssv658356,nssv684977,nssv672410 M 2026 0 16 "" nsv818609 8 15828545 15831260 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417042 S 112 0 1 "" NA07000 nsv397151 8 15838369 15838369 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415729 M 24 "" nsv397716 8 15838466 15838466 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416294 M 24 "" nsv528487 8 15879934 15884216 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705091 S 2026 0 1 "" nsv526423 8 15898825 15917140 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702724 S 2026 0 1 "" nsv516825 8 15919229 15980161 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694355,nssv671560,nssv695560,nssv690856,nssv671203,nssv689441,nssv663419,nssv678889 M 2026 7 1 "" nsv831241 8 15927142 16048616 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446940,nssv1446938 M 95 1 1 "" esv2752241 8 15928697 15995420 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6986468,essv6983600 M 771 1 0 "" BEC_671 dgv876n27 8 15929497 15980161 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv465568,nsv465570,nsv465569 M 1557 3 0 "" 1780854257_A,1780854437_A,NINDS_232 nsv465571 8 15950903 15973409 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541359 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00947 nsv528459 8 15957152 15988678 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705061 S 2026 0 1 "" dgv249e55 8 15977607 16065839 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv2752242,esv2752243 M 771 0 2 "" BEC_191,BEC_73 nsv519848 8 15983553 15988678 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697083 S 2026 0 1 "" nsv465573 8 15984805 15988678 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541361 S 1557 0 1 "" 1780862212_A dgv877n27 8 15994142 16073465 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv465578,nsv465575,nsv465579,nsv465577,nsv465576,nsv465580 M 1557 0 6 "" 1780862041_A,1780862306_A,HGDP00524,HGDP00886,HGDP01402,NINDS_206 nsv516531 8 15994142 16073465 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv656737,nssv688288,nssv683327,nssv677314,nssv678254,nssv670726,nssv656442,nssv678562,nssv680206,nssv668914,nssv672836 M 2026 0 11 "" nsv465581 8 16016055 16029553 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541368 S 1557 0 1 "" 1780862466_A nsv465582 8 16031230 16073465 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541369 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01172 nsv519153 8 16073465 16137027 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696630 S 2026 0 1 "" nsv520688 8 16079224 16094506 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697557 S 2026 0 1 "" nsv525730 8 16123083 16125684 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701894 S 2026 0 1 "" nsv518492 8 16144651 16165538 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695932 S 2026 0 1 "" nsv831242 8 16150756 16348466 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446941 S 95 1 0 "" nsv6092 8 16231527 16267489 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10611,nssv5062 M 9 0 2 "" NA18956,NA19129 dgv2223e1 8 16231929 17010633 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv20693,esv623,essv24490,esv786,essv23895,essv25091 M 271 0 0 "" NA12802,NA12814 dgv142n17 8 16241663 16256536 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437056,nsv437057,nsv437059 M 60 0 3 "" NA07019,NA10835,NA12752 nsv8300 8 16245129 16252207 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17698,nssv16464,nssv17175,nssv19461,nssv16820,nssv18942,nssv20204,nssv19407,nssv16945,nssv17939,nssv16252,nssv18158,nssv19393 M 31 0 13 Samples from several populations that are part of the HapMap project. "" NA12155,NA18502,NA18504,NA18517,NA18537,NA18853,NA18860,NA18942,NA18975,NA18980,NA19132,NA19144,NA19173 nsv398384 8 16245684 16251904 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416962 M 24 "" nsv438043 8 16245929 16250731 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv469749,nssv469734,nssv469764,nssv469755,nssv469744,nssv469731,nssv469732,nssv469765,nssv469733,nssv469746,nssv469736,nssv469738,nssv469737,nssv469762,nssv469739,nssv469747,nssv469743,nssv469766,nssv469758,nssv469745,nssv469735,nssv469760,nssv469751,nssv469753,nssv469756,nssv469750,nssv469742,nssv469754,nssv469761,nssv469759,nssv469757,nssv469748 M 269 0 31 Samples from several populations that are part of the HapMap project. "" NA10835,NA12248,NA12752,NA12760,NA18505,NA18508,NA18515,NA18516,NA18517,NA18521,NA18522,NA18612,NA18852,NA18854,NA18956,NA18975,NA18990,NA18992,NA18998,NA19128,NA19129,NA19130,NA19153,NA19160,NA19192,NA19194,NA19201,NA19204,NA19208,NA19209,NA19211 nsv442478 8 16251325 16251494 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv437605 8 16304537 16370342 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467486 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19205 nsv517629 8 16304537 16377598 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv680685,nssv658777,nssv687569,nssv685504,nssv686667,nssv687971,nssv661341,nssv690842,nssv662569,nssv675824,nssv669915,nssv662238,nssv660315,nssv670501,nssv665467,nssv662786,nssv658447,nssv669842,nssv673132,nssv667781,nssv668394,nssv681809,nssv687385,nssv688790,nssv690540,nssv689442,nssv666267,nssv660917,nssv654164,nssv670408,nssv669129,nssv690359,nssv689386,nssv687655,nssv651787,nssv655224,nssv669987,nssv664192,nssv662549,nssv674264,nssv666934,nssv672972,nssv683407,nssv653840,nssv692076,nssv654791,nssv655106,nssv676289,nssv676365,nssv686561,nssv661753,nssv664421,nssv665371,nssv673627,nssv669664,nssv681864,nssv686270,nssv681933,nssv687553,nssv671759,nssv655983,nssv685624,nssv664664,nssv688144,nssv685829,nssv668945,nssv664540,nssv655346,nssv680946,nssv658811,nssv654383,nssv674354,nssv684917,nssv661935,nssv693221,nssv657646,nssv671976,nssv660946,nssv659405,nssv677333,nssv665571,nssv663715,nssv658397,nssv668463,nssv690202,nssv666506,nssv689778,nssv656714,nssv677545,nssv661054,nssv668866,nssv654366,nssv653067,nssv661091,nssv654336,nssv664295,nssv678625,nssv673836,nssv659390,nssv655198,nssv676768,nssv671821,nssv688236,nssv692980,nssv655295,nssv657629,nssv683314,nssv681904,nssv658987,nssv667189,nssv676095,nssv692039,nssv685081,nssv653102,nssv664389,nssv685322,nssv662129,nssv682914,nssv693120,nssv669226,nssv663331,nssv682100,nssv686885,nssv690295,nssv681984,nssv654878,nssv656023,nssv658366,nssv692017,nssv685469,nssv668981,nssv689409,nssv684430,nssv653364,nssv681517,nssv664342,nssv677907,nssv686283,nssv677041,nssv673232,nssv675862,nssv673643,nssv659829,nssv680989,nssv693559,nssv666911,nssv672009,nssv659138,nssv664072,nssv690784,nssv663163,nssv656791,nssv667866,nssv689932,nssv683766,nssv676703,nssv684058,nssv682391,nssv678111,nssv680897,nssv657926,nssv681424,nssv688509,nssv681414,nssv693449,nssv693237,nssv671435 M 2026 0 167 "" nsv8301 8 16304897 16324479 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19467,nssv18972,nssv19491 M 31 0 3 Samples from several populations that are part of the HapMap project. "" NA18502,NA18860,NA19132 nsv442481 8 16306635 16319032 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv818610 8 16306880 16312873 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416254,nssv1415817,nssv1415806,nssv1415662,nssv1415828,nssv1415663 M 112 0 6 "" NA10835,NA12057,NA12248,NA19140,NA19141,NA19142 nsv438044 8 16311380 16314838 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv469768,nssv469767 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA19204,NA19205 nsv8303 8 16325867 16333733 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17728 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19144 dgv250e55 8 16330262 16932710 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv34322,esv34335 M 771 2 0 "" NA12802,NA12814 nsv8304 8 16330605 16934028 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21000,nssv19521,nssv16060,nssv17317 M 31 2 2 Samples from several populations that are part of the HapMap project. "" NA11830,NA12802,NA18860,NA19221 nsv442100 8 16367417 16371014 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" essv14679 8 16387088 16428215 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19145 nsv471804 8 16428544 16428875 CNV Loss Hinds et al 2006 16327809 Oligo_aCGH,PCR Custom Perlegen arrays nssv646085 M 0.064 95 "" nsv526068 8 16453478 16509140 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702308 S 2026 0 1 "" esv2752244 8 16469779 16567300 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6989787,essv6983410 M 771 0 1 "" BEC_649 nsv521521 8 16479945 16582762 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698139 S 2026 0 1 "" nsv465584 8 16492939 16569399 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541371 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00630 nsv465585 8 16523131 16620928 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541372 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00643 nsv465586 8 16554923 16565923 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541373 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00648 nsv398357 8 16591135 16591234 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416935 M 24 "" nsv6093 8 16640572 16656075 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8467 S 9 0 1 "" NA12156 esv2752245 8 16715581 16857752 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6988808,essv6984468,essv6984469,essv6984470 M 771 1 0 "" BEC_708 nsv396749 8 16730296 16730347 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415327 M 24 "" nsv6094 8 16758466 16766174 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8468 S 9 0 1 "" NA12156 nsv6095 8 16797000 16842237 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8469 S 9 0 1 "" NA12156 nsv831243 8 16801855 17013749 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446942 S 95 1 0 "" nsv465587 8 16813187 16870668 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541374 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01365 nsv522966 8 16816208 16819341 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698636 S 2026 0 1 "" nsv6096 8 16854548 16889221 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2781 S 9 1 0 "" NA18555 nsv524384 8 16857203 16870668 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700301 S 2026 0 1 "" nsv396495 8 16866251 16866620 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415073 M 24 "" nsv507444 8 16876533 16882533 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621905 S 4 1 0 "" NA10860 nsv395865 8 16913140 16913140 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv414443 M 24 "" nsv396389 8 17006594 17006915 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv414967 M 24 "" nsv831244 8 17007797 17172590 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446943 S 95 1 0 "" dgv242n6 8 17029356 17029421 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv396900,nsv396194 M 24 "" nsv516091 8 17038314 17040806 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv667952,nssv666141 M 2026 0 2 "" nsv831245 8 17157454 17352779 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446944 S 95 1 0 "" nsv518761 8 17199032 17199803 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696211 S 2026 0 1 "" nsv465588 8 17237382 17252904 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541375 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01012 nsv465589 8 17257500 17348578 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541376 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00905 nsv465590 8 17263000 17390156 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541377 S 1557 0 1 "" 1780854487_A nsv6097 8 17306535 17334018 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5063 S 9 1 0 "" NA19129 nsv396808 8 17309987 17310310 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415386 M 24 "" nsv516180 8 17326782 17443528 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697890,nssv684286,nssv666663,nssv676769,nssv682529,nssv682614 M 2026 0 6 "" nsv831246 8 17332243 17522874 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446945 S 95 1 0 "" dgv2224e1 8 17335551 17685810 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1536,essv3157,esv538,esv797 M 271 0 0 "" NA19012 nsv396222 8 17385277 17394787 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv414800 M 24 "" esv34867 8 17390390 17627431 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6987381,essv6987382,essv6978388,essv6978387,essv6978386 M 771 0 1 "" NA19012 nsv507445 8 17406220 17412220 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623030,nssv620405,nssv621906 M 4 3 0 "" NA10860,NA15510,NA18994 nsv8305 8 17434174 17436248 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19002 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18502 nsv831247 8 17443477 17603707 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446946 S 95 1 0 "" nsv8306 8 17480098 17491197 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16850 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18853 essv13812 8 17480455 17493999 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18853 nsv516988 8 17482709 17490705 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv653558,nssv675036 M 2026 0 2 "" nsv818612 8 17482709 17490705 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417891 S 112 0 1 "" NA18853 nsv516779 8 17528538 17536010 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv685082,nssv696745,nssv692790,nssv657466,nssv701804,nssv686271,nssv698053,nssv670767 M 2026 6 2 "" nsv831249 8 17545905 17740558 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446948,nssv1446947 M 95 0 2 "" nsv8307 8 17560553 17567168 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16975 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18980 nsv510133 8 17575645 17581645 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622155 S 4 0 1 "" NA10860 dgv2225e1 8 17585213 17599309 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv7945,essv15915 M 271 0 0 "" NA19203,NA19205 nsv516696 8 17623070 17625980 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv675841,nssv675589,nssv691530,nssv670442,nssv654350,nssv654145,nssv689617,nssv655743,nssv680253,nssv663869,nssv680270,nssv693537,nssv664374,nssv689639,nssv678362,nssv689443,nssv680217,nssv688649,nssv674799,nssv681727,nssv674244,nssv669586,nssv653375,nssv684810,nssv668364,nssv681660,nssv692229,nssv684431,nssv659105,nssv665087,nssv674226,nssv683548,nssv684175,nssv673742,nssv672689,nssv677826,nssv680607,nssv659566,nssv683094,nssv681961,nssv685954,nssv674598,nssv688710,nssv679789,nssv655927,nssv664491,nssv684741,nssv677485,nssv691707,nssv673358,nssv687063,nssv690988,nssv657867,nssv688095,nssv660876,nssv672647,nssv691199,nssv660295,nssv685933,nssv656940,nssv691545,nssv658745,nssv682973,nssv659695,nssv677665,nssv665028,nssv654367,nssv675613,nssv687680,nssv679914,nssv675323,nssv666268,nssv688116,nssv658583,nssv685277,nssv693303,nssv678544,nssv692161,nssv670974,nssv675533,nssv656625,nssv690906 M 2026 0 82 "" nsv471727 8 17624833 17626145 CNV Loss Hinds et al 2006 16327809 Oligo_aCGH,PCR Custom Perlegen arrays nssv646008 M 0.125 95 "" nsv818613 8 17625071 17625980 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418380 S 112 0 1 "" NA12146 nsv526978 8 17625071 17626684 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703350 S 2026 0 1 "" nsv831250 8 17639027 17792121 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446949 S 95 0 1 "" nsv6098 8 17648443 17679837 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3631 S 9 1 0 "" NA12878 nsv8308 8 17671619 17674881 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16832,nssv17859,nssv18541,nssv19453,nssv16667 M 31 5 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA12740,NA18504,NA18563,NA19240 nsv398098 8 17721524 17721604 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416676 M 24 "" nsv396279 8 17721924 17721995 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv414857 M 24 "" nsv397275 8 17777273 17777378 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415853 M 24 "" nsv524215 8 17852008 17895528 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700102 S 2026 1 0 "" nsv522647 8 17881369 18216291 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv706047 S 2026 0 1 "" nsv831251 8 18118158 18165009 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446952,nssv1446951,nssv1446953 M 95 0 3 "" nsv517813 8 18126109 18158843 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695218 S 2026 1 0 "" nsv523339 8 18151237 18153536 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699085 S 2026 0 1 "" nsv831252 8 18249282 18450077 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446954 S 95 1 0 "" nsv520137 8 18253559 18254256 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv679455,nssv661092 M 2026 0 2 "" nsv518655 8 18261938 18287748 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696103 S 2026 0 1 "" nsv510134 8 18382839 18388839 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624059,nssv621329 M 4 0 2 "" NA15510,NA18994 nsv521053 8 18493921 18513631 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697363,nssv696164,nssv683732,nssv680847 M 2026 4 0 "" nsv519382 8 18516140 18519445 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv655766,nssv656530,nssv691592 M 2026 0 3 "" nsv471732 8 18519143 18520419 CNV Loss Hinds et al 2006 16327809 Oligo_aCGH,PCR Custom Perlegen arrays nssv646013 M 0.126 95 "" nsv521368 8 18519445 18523467 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694439 S 2026 0 1 "" nsv471720 8 18531889 18532828 CNV Loss Hinds et al 2006 16327809 Oligo_aCGH,PCR Custom Perlegen arrays nssv646001 M 0.021 95 "" nsv507446 8 18545955 18551955 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620406 S 4 1 0 "" NA15510 nsv525714 8 18598978 18604967 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701876 S 2026 0 1 "" nsv518488 8 18609292 18617744 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694241 S 2026 0 1 "" nsv520348 8 18656744 18656892 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv688625,nssv663098 M 2026 0 2 "" nsv6100 8 18707740 18734877 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1722 S 9 1 0 "" NA18555 nsv527228 8 18720801 18722837 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703628 S 2026 0 1 "" nsv397362 8 18723509 18723663 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415940 M 24 "" nsv519028 8 18749712 18767840 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696497 S 2026 0 1 "" nsv831253 8 18750693 18942661 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446955 S 95 1 0 "" nsv519244 8 18764904 18767840 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694071 S 2026 0 1 "" nsv465596 8 18796873 19034015 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541379 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01405 nsv831254 8 18825099 19049408 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446956 S 95 1 0 "" nsv831255 8 18849188 19004478 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446957 S 95 1 0 "" nsv8309 8 18888908 18892596 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16282 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18942 nsv526122 8 18891044 18905763 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702372 S 2026 0 1 "" essv8009 8 18893788 18914629 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19221 nsv8310 8 18894422 18910298 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16494,nssv16235,nssv16697,nssv16984,nssv17526,nssv17478,nssv17347,nssv19943,nssv16312,nssv17889,nssv16496,nssv16880,nssv21030 M 31 0 13 Samples from several populations that are part of the HapMap project. "" NA10839,NA10847,NA10863,NA11830,NA12740,NA18563,NA18564,NA18853,NA18942,NA18972,NA18975,NA19007,NA19221 nsv442101 8 18895819 18903101 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv878n27 8 18898220 18905763 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv465598,nsv465597 M 1557 0 2 "" HGDP00096,HGDP00650 nsv517395 8 18898220 18905763 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv670574,nssv679014,nssv666406,nssv680947,nssv655848,nssv691732,nssv652038,nssv668603,nssv681135,nssv668284,nssv680135,nssv663201,nssv669697,nssv662895,nssv680808,nssv676626,nssv668778,nssv671677,nssv686752,nssv658357,nssv668365,nssv671902,nssv676601,nssv688779,nssv675751,nssv654510,nssv678681,nssv657449,nssv651896,nssv678411,nssv662479,nssv656751 M 2026 0 32 "" nsv818614 8 18898220 18905763 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417727,nssv1417738 M 112 0 2 "" NA10863,NA12234 nsv519585 8 18898220 18933089 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696935 S 2026 0 1 "" esv32805 8 18899978 18902243 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98021 S 51 1 0 "" 22259 essv14002 8 18900123 18924134 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19222 nsv6101 8 18945870 18977416 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10612 S 9 1 0 "" NA18956 nsv522185 8 18999082 20399593 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694958 S 2026 1 0 "" nsv528088 8 19025993 19029391 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704624 S 2026 0 1 "" nsv519186 8 19043201 19043251 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696670 S 2026 0 1 "" nsv6102 8 19095768 19140626 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8470 S 9 0 1 "" NA12156 dgv879n27 8 19159416 19203362 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv465600,nsv465599 M 1557 0 2 "" HGDP00579,HGDP01397 nsv396786 8 19190874 19190930 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415364 M 24 "" nsv521992 8 19200181 19203362 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694759 S 2026 0 1 "" nsv398156 8 19224503 19224554 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416734 M 24 "" nsv6103 8 19250922 19284621 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5064 S 9 1 0 "" NA19129 nsv523271 8 19259670 19270615 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699005 S 2026 0 1 "" nsv528004 8 19269052 19272477 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704529 S 2026 0 1 "" nsv522774 8 19289999 19292202 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698415 S 2026 0 1 "" nsv396275 8 19381619 19381687 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv414853 M 24 "" nsv6104 8 19412791 19447324 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3632 S 9 1 0 "" NA12878 nsv525772 8 19478301 19478978 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701943 S 2026 0 1 "" nsv465601 8 19478301 19500753 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541384 S 1557 0 1 "" NINDS_230 nsv6105 8 19486408 19518510 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6207 S 9 1 0 "" NA12156 nsv527023 8 19534228 19534278 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703398 S 2026 0 1 "" nsv6106 8 19543834 19588529 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8471 S 9 0 1 "" NA12156 nsv527615 8 19556817 19559214 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704081 S 2026 0 1 "" dgv880n27 8 19580295 19599678 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv465607,nsv465604,nsv465606,nsv465602,nsv465603 M 1557 0 5 "" HGDP00454,HGDP00455,HGDP00475,HGDP01086,HGDP01090 nsv528523 8 19590976 19599678 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705133 S 2026 0 1 "" nsv521981 8 19670400 19676370 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694748 S 2026 1 0 "" nsv526671 8 19687894 19699599 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703003 S 2026 1 0 "" nsv520043 8 19777848 19783092 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv682377,nssv660259 M 2026 0 2 "" nsv510135 8 19778557 19784557 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622156 S 4 0 1 "" NA10860 esv32767 8 19784469 19917362 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100850 S 51 0 1 "" 21656 nsv515694 8 19865513 19869176 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv667012,nssv669946,nssv684287,nssv670870,nssv680848,nssv654766,nssv656067,nssv658398,nssv664442,nssv665849,nssv691763,nssv690297,nssv671071 M 2026 13 0 "" nsv510136 8 19979326 19985326 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622157,nssv618286 M 4 0 2 "" CHM,NA10860 nsv525841 8 20001369 20015169 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702034 S 2026 0 1 "" nsv8311 8 20019323 20025204 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16265,nssv16524,nssv16342,nssv17205,nssv16727,nssv17343,nssv19497,nssv17556,nssv16862,nssv17377,nssv16120,nssv19973,nssv20234,nssv17005,nssv16526,nssv17788,nssv19483,nssv17508,nssv18571 M 31 0 19 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10847,NA10863,NA11830,NA12802,NA18504,NA18517,NA18537,NA18563,NA18564,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19144,NA19240 nsv508498 8 20029169 20076420 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617358 S 4 0 1 "" CHM essv1565 8 20030851 20073883 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18997 nsv438045 8 20037382 20067451 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv469769 S 269 0 1 Samples from several populations that are part of the HapMap project. "" NA18997 nsv8312 8 20042443 20051291 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17035 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18980 nsv6107 8 20100434 20145074 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8472 S 9 0 1 "" NA12156 nsv520882 8 20146286 20153772 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv683297,nssv676886 M 2026 0 2 "" nsv831256 8 20206513 20344504 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446958 S 95 0 1 "" nsv510137 8 20253239 20259239 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624060,nssv621331 M 4 0 2 "" NA15510,NA18994 essv23685 8 20273229 20559087 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA10863 nsv469890 8 20283394 20489416 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649911 M 265 0 5 Samples from several populations that are part of the HapMap project. "" nsv520924 8 20510232 20510385 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697691 S 2026 0 1 "" essv19243 8 20577324 23167554 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA10838 nsv8314 8 20629908 20652970 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17437,nssv18188 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA11830,NA12155 nsv831257 8 20654716 20811713 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446959 S 95 1 0 "" nsv525207 8 20729747 20735575 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701289 S 2026 0 1 "" nsv831258 8 20799212 20984660 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446960 S 95 1 0 "" nsv6108 8 20865144 20898017 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6208 S 9 1 0 "" NA12156 nsv6109 8 20914401 20947840 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3633 S 9 1 0 "" NA12878 nsv509253 8 20924365 20957027 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620904,nssv619522 M 4 2 0 "" NA10860,NA15510 nsv397090 8 20944957 20945760 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415668 M 24 "" nsv831260 8 20951546 21141405 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446963 S 95 0 1 "" nsv520495 8 20987208 20988531 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694385 S 2026 0 1 "" nsv469878 8 20999540 21172587 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649899 M 265 0 8 Samples from several populations that are part of the HapMap project. "" nsv831261 8 21040375 21237899 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446965,nssv1446964 M 95 0 2 "" nsv6111 8 21170892 21176126 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2783 S 9 1 0 "" NA18555 nsv469767 8 21181594 21388675 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649788 M 265 0 6 Samples from several populations that are part of the HapMap project. "" nsv8315 8 21212110 21216409 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16910 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18853 nsv397592 8 21214827 21215002 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416170 M 24 "" nsv398031 8 21215013 21215817 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416609 M 24 "" nsv6112 8 21216491 21261490 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8473 S 9 0 1 "" NA12156 nsv471770 8 21254710 21255325 CNV Loss Hinds et al 2006 16327809 Oligo_aCGH,PCR Custom Perlegen arrays nssv646051 M 0.045 95 "" nsv831262 8 21326397 21464672 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446966 S 95 0 1 "" nsv507447 8 21335380 21341380 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623031,nssv621907 M 4 2 0 "" NA10860,NA18994 nsv433492 8 21343107 21344107 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463373 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA18956 nsv6113 8 21354708 21400768 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv721 S 9 0 1 "" NA19240 nsv8316 8 21373178 21381007 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18601 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19240 nsv442102 8 21374732 21379526 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv6114 8 21397220 21429697 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6209 S 9 1 0 "" NA12156 nsv8317 8 21428460 21432141 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17919 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA12740 nsv8318 8 21660494 21714958 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21060,nssv17296 M 31 1 1 Samples from several populations that are part of the HapMap project. "" NA18552,NA19221 nsv509254 8 21708293 21779621 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623529 S 4 1 0 "" NA18994 nsv465608 8 21718252 21735360 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541391 S 1557 0 1 "" 1780854418_A essv21913 8 21729708 22858325 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA10838 nsv519854 8 21748175 21762020 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697087 S 2026 0 1 "" nsv8319 8 21832108 21834257 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18218,nssv20264,nssv17949,nssv17538,nssv17014,nssv19513,nssv19551 M 31 7 0 Samples from several populations that are part of the HapMap project. "" NA10839,NA12155,NA12740,NA18504,NA18517,NA18564,NA18860 nsv831263 8 21944545 22097871 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446970,nssv1446969,nssv1446967,nssv1446968,nssv1446972,nssv1446971,nssv1446975,nssv1446976,nssv1446974 M 95 0 9 "" nsv528590 8 21947885 22081589 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705215 S 2026 0 1 "" nsv8320 8 21951089 21953587 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17969 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19173 nsv465613 8 21960158 22111293 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541392 S 1557 0 1 "" NINDS_51 nsv831264 8 22007157 22241498 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446977,nssv1446986,nssv1446980,nssv1446979,nssv1446978,nssv1446985,nssv1446982,nssv1446981,nssv1446983 M 95 1 8 "" dgv450n21 8 22008172 22044460 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv524566,nsv519698 M 2026 0 5 "" dgv881n27 8 22008172 22076982 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv465615,nsv465618,nsv465614 M 1557 0 3 "" HGDP00776,HGDP00784,HGDP00961 nsv527293 8 22020323 22076982 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703708 S 2026 0 1 "" nsv524720 8 22034017 22063238 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700705 S 2026 0 1 "" nsv831265 8 22113146 22280376 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446987 S 95 0 1 "" nsv6115 8 22163282 22195880 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6210 S 9 1 0 "" NA12156 nsv518646 8 22210078 22434063 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696095 S 2026 1 0 "" nsv831266 8 22229411 22389491 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446988 S 95 0 1 "" essv1932 8 22241469 22414061 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18959 nsv6116 8 22282033 22312824 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5066 S 9 1 0 "" NA19129 nsv398059 8 22309907 22310036 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416637 M 24 "" dgv451n21 8 22317574 22466102 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv517680,nsv519758 M 2026 0 12 "" nsv8321 8 22320584 22323164 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19581 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18860 nsv6117 8 22583902 22615332 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10613 S 9 1 0 "" NA18956 nsv8322 8 22602161 22609731 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18248,nssv21120 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA12155,NA19221 nsv831267 8 22638260 22806628 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446989 S 95 1 0 "" nsv396765 8 22679225 22679225 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415343 M 24 "" nsv523385 8 22823484 22830055 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699134 S 2026 0 1 "" nsv517319 8 22826949 22828329 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv692367,nssv680383,nssv651699,nssv687196 M 2026 0 4 "" nsv529025 8 22893066 22893697 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705736 S 2026 0 1 "" nsv8323 8 22898453 22900949 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21150,nssv19527 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA19132,NA19221 nsv526377 8 22917187 22920567 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702673 S 2026 0 1 "" nsv522436 8 22917187 22928002 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705794 S 2026 0 1 "" nsv524231 8 22917187 22942075 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700120 S 2026 0 1 "" nsv520728 8 22993801 23097027 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694397 S 2026 0 1 "" nsv8326 8 23045918 23075955 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19611 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18860 dgv68n64 8 23049312 23075599 CNV Gain Wang_et_al_2007 17921354 SNP_array nsv818617,nsv818615 M 112 2 0 "" NA19144,NA19238 nsv818616 8 23056128 23063738 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415839 S 112 1 0 "" NA19141 nsv831268 8 23270459 23451537 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446990 S 95 1 0 "" nsv6118 8 23274995 23308648 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8474 S 9 1 0 "" NA12156 nsv508499 8 23365966 23478658 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620004 S 4 0 1 "" NA15510 nsv471717 8 23463108 23463898 CNV Loss Hinds et al 2006 16327809 Oligo_aCGH,PCR Custom Perlegen arrays nssv645998 M 1.036 95 "" nsv396338 8 23463165 23463804 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv414916 M 24 "" nsv6119 8 23511720 23546728 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3634,nssv722 M 9 2 0 "" NA12878,NA19240 nsv831269 8 23575125 23763289 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1446991 S 95 1 0 "" nsv519613 8 23733945 23746576 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696951 S 2026 0 1 "" nsv465622 8 23733945 23751848 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541397 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01191 nsv397455 8 23811637 23811714 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416033 M 24 "" nsv397954 8 23811886 23811969 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416532 M 24 "" nsv396676 8 23854037 23854037 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415254 M 24 "" nsv396366 8 23954409 23954543 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv414944 M 24 "" nsv520461 8 23966612 23977730 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv693949,nssv690424,nssv678204,nssv671664 M 2026 0 4 "" nsv396163 8 24039794 24039794 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv414741 M 24 "" nsv831271 8 24116700 24305391 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447003,nssv1446992,nssv1446993,nssv1446994,nssv1446998,nssv1446997,nssv1447001,nssv1446996,nssv1447000,nssv1447002,nssv1446999 M 95 11 0 "" nsv6120 8 24189670 24221735 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1723 S 9 0 1 "" NA18555 nsv397573 8 24201255 24207030 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416151 M 24 "" nsv442506 8 24201375 24207011 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv507448 8 24276708 24282708 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617762,nssv621908 M 4 2 0 "" CHM,NA10860 dgv452n21 8 24334889 24418700 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv518606,nsv521359 M 2026 0 2 "" nsv397333 8 24358741 24358741 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415911 M 24 "" nsv437606 8 24556400 24566268 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467487 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19221 nsv6122 8 24586554 24631590 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1724 S 9 0 1 "" NA18555 nsv818618 8 24589083 24594137 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417251 S 112 1 0 "" NA18577 nsv509255 8 24971520 24985633 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623530 S 4 1 0 "" NA18994 esv33239 8 24980920 24981464 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98779 S 51 1 0 "" 21606 esv33341 8 24981464 24990511 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99563 S 51 1 0 "" 22335 esv32628 8 25001296 25001594 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98008 S 51 0 1 "" 22259 nsv510138 8 25007936 25013936 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624061 S 4 0 1 "" NA18994 dgv143n17 8 25015392 25048380 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437608,nsv437607 M 60 0 2 "" NA19100,NA19240 nsv6123 8 25018449 25081492 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1725,nssv9745,nssv5067,nssv723 M 9 0 4 "" NA18507,NA18555,NA19129,NA19240 dgv2226e1 8 25026436 25049622 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv21620,essv3505,essv14262,essv987 M 271 0 0 "" NA07348,NA18964,NA18999,NA19100 dgv144n17 8 25026922 25048380 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437610,nsv437609,nsv437060,nsv437061 M 60 0 4 "" NA10861,NA12878,NA19139,NA19173 essv23722 8 25027869 25040250 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12813 nsv8327 8 25027885 25047057 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16039,nssv17999,nssv18631,nssv17818,nssv17065,nssv17373,nssv16892,nssv16787,nssv17044 M 31 0 9 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA18563,NA18572,NA18980,NA19144,NA19173,NA19240 nsv438046 8 25030376 25045471 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv469800,nssv469781,nssv469772,nssv469778,nssv469799,nssv469794,nssv469804,nssv469801,nssv469795,nssv469810,nssv469775,nssv469791,nssv469802,nssv469780,nssv469783,nssv469771,nssv469782,nssv469777,nssv469786,nssv469770,nssv469808,nssv469809,nssv469789,nssv469784,nssv469788,nssv469798,nssv469797,nssv469779,nssv469776,nssv469792,nssv469790,nssv469773,nssv469812,nssv469803,nssv469793,nssv469811,nssv469787,nssv469806,nssv469805 M 269 0 27 Samples from several populations that are part of the HapMap project. "" NA06994,NA07029,NA07345,NA07348,NA07357,NA10838,NA10839,NA10846,NA10861,NA11995,NA12004,NA12005,NA12006,NA12144,NA12145,NA12707,NA12716,NA12801,NA12812,NA12878,NA12892,NA18506,NA18999,NA19098,NA19100,NA19239,NA19240 nsv442509 8 25030439 25040250 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" esv32992 8 25034999 25047279 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98655 S 51 0 1 "" 21606 nsv508500 8 25046236 25131408 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620005,nssv618829,nssv622592 M 4 0 3 "" NA10860,NA15510,NA18994 nsv8328 8 25047579 25050567 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17104 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA10839 nsv521360 8 25066422 25084588 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697970 S 2026 0 1 "" nsv6124 8 25107348 25141729 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4611,nssv1727,nssv3635 M 9 0 3 "" NA12878,NA18555,NA19129 dgv243n6 8 25122596 25126576 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv396934,nsv397342 M 24 "" nsv396824 8 25259993 25260217 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415402 M 24 "" nsv397748 8 25282586 25282586 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416326 M 24 "" nsv527803 8 25294379 25296354 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704297 S 2026 0 1 "" dgv453n21 8 25311501 25321843 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv519361,nsv526195 M 2026 0 3 "" nsv6125 8 25323799 25358111 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv724 S 9 1 0 "" NA19240 essv1351 8 25324942 25478051 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19007 nsv396689 8 25383139 25383195 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415267 M 24 "" nsv437611 8 25450071 25472750 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467492 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19129 nsv6126 8 25451542 25529181 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5068,nssv8475 M 9 0 2 "" NA12156,NA19129 dgv145n17 8 25463222 25474125 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437062,nsv437063,nsv437064 M 60 0 3 "" NA06991,NA10846,NA10861 nsv8329 8 25464392 25472676 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17125,nssv16556,nssv16554 M 31 0 3 Samples from several populations that are part of the HapMap project. "" NA18975,NA18980,NA19007 nsv438047 8 25467962 25470607 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv469815,nssv469821,nssv469817,nssv469814,nssv469816,nssv469819,nssv469813,nssv469820 M 269 0 8 Samples from several populations that are part of the HapMap project. "" NA06991,NA06993,NA10846,NA10861,NA11994,NA12144,NA19127,NA19129 dgv454n21 8 25575129 25628787 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv517955,nsv528079 M 2026 0 2 "" dgv882n27 8 25575129 25628787 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv465624,nsv465623 M 1557 0 2 "" 1798860587_A,HGDP00888 nsv465625 8 25582234 25595747 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541400 S 1557 0 1 "" 1780854327_A dgv455n21 8 25601673 25707517 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv520516,nsv522868 M 2026 0 2 "" nsv509256 8 25628066 25650137 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619523 S 4 1 0 "" NA10860 nsv507449 8 25681826 25687826 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623032,nssv621909 M 4 2 0 "" NA10860,NA18994 essv17389 8 25737239 25763131 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18855 esv32961 8 25755569 25857299 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99541 S 51 1 0 "" 22335 nsv831272 8 25799620 25962090 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447005,nssv1447004 M 95 1 1 "" nsv524032 8 25810608 25812598 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699895 S 2026 0 1 "" nsv6127 8 25855937 25888559 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1728 S 9 1 0 "" NA18555 nsv6128 8 25973925 26018715 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1729 S 9 0 1 "" NA18555 nsv6129 8 25995446 26029522 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3636 S 9 1 0 "" NA12878 nsv396565 8 26129941 26129941 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415143 M 24 "" nsv396336 8 26129943 26129943 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv414914 M 24 "" esv32875 8 26159204 26159859 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv95813 S 51 1 0 "" 21911 nsv831273 8 26272422 26426708 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447007 S 95 0 1 "" nsv519912 8 26388640 26404795 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697120 S 2026 1 0 "" nsv6130 8 26473239 26508259 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6211,nssv2784 M 9 2 0 "" NA12156,NA18555 nsv465626 8 26544163 26564684 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541401 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00553 nsv437065 8 26621687 26637085 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv466946 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA07048 nsv527478 8 26764903 26889115 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703922 S 2026 1 0 "" nsv524598 8 26814567 26818151 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700559 S 2026 0 1 "" nsv519039 8 26820864 26845125 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696508 S 2026 0 1 "" nsv471728 8 26935177 26936925 CNV Loss Hinds et al 2006 16327809 Oligo_aCGH,PCR Custom Perlegen arrays nssv646009 M 0.021 95 "" nsv442103 8 26935440 26942727 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv831274 8 26980569 27191083 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447008 S 95 1 0 "" nsv510979 8 27052200 27119357 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624324,nssv621607,nssv618609 M 4 0 0 "" CHM,NA15510,NA18994 nsv507450 8 27065452 27071452 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621910 S 4 1 0 "" NA10860 nsv6131 8 27151734 27196834 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8476 S 9 0 1 "" NA12156 nsv471719 8 27236168 27236380 CNV Loss Hinds et al 2006 16327809 Oligo_aCGH,PCR Custom Perlegen arrays nssv646000 M 0.238 95 "" nsv831275 8 27384207 27537524 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447009 S 95 0 1 "" nsv437612 8 27458049 27461726 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467493 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19094 nsv526133 8 27493305 27506452 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702387 S 2026 0 1 "" nsv397633 8 27574094 27574164 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416211 M 24 "" nsv397387 8 27673067 27673215 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415965 M 24 "" nsv507451 8 27681288 27687288 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623033 S 4 1 0 "" NA18994 nsv528584 8 27684805 27685724 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705206 S 2026 1 0 "" nsv524133 8 27689983 27772227 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700011 S 2026 0 1 "" nsv519636 8 27691536 27745224 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696963 S 2026 1 0 "" nsv397930 8 27716070 27718723 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416508 M 24 "" nsv398258 8 27739980 27740265 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416836 M 24 "" nsv510139 8 27758796 27764796 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624062 S 4 0 1 "" NA18994 nsv397623 8 27768541 27771798 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416201 M 24 "" nsv6133 8 27784584 27817389 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv725 S 9 1 0 "" NA19240 nsv509259 8 27793655 27924490 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623532 S 4 1 0 "" NA18994 nsv396611 8 27832094 27832147 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415189 M 24 "" nsv524295 8 27974287 27979307 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700196 S 2026 0 1 "" nsv521155 8 27990118 27990592 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv683113,nssv686513 M 2026 0 2 "" nsv398063 8 28026902 28026902 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416641 M 24 "" nsv524953 8 28132190 28181198 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700974 S 2026 1 0 "" esv32577 8 28133065 28142218 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100755,essv98172 M 51 0 2 "" 21656,21772 esv33323 8 28163974 28170312 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100837 S 51 0 1 "" 21656 esv32982 8 28191137 28200833 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98825,essv99859 M 51 0 2 "" 21606,22086 nsv520948 8 28202619 28202672 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv678230,nssv685450 M 2026 0 2 "" nsv6134 8 28208420 28243561 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3638 S 9 1 0 "" NA12878 dgv456n21 8 28234932 28381330 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv524153,nsv518985 M 2026 2 0 "" nsv6135 8 28263596 28308463 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5069 S 9 0 1 "" NA19129 nsv527661 8 28352090 28360688 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704133 S 2026 0 1 "" nsv526818 8 28825166 28828062 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703172 S 2026 0 1 "" nsv6136 8 28871609 28904402 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3639 S 9 1 0 "" NA12878 nsv398424 8 28873658 28873658 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv417002 M 24 "" nsv831276 8 28972457 29123109 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447010 S 95 1 0 "" nsv528871 8 29164298 29166073 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705551 S 2026 0 1 "" nsv398265 8 29527103 29528563 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416843 M 24 "" nsv6137 8 29817844 29847758 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8477 S 9 0 1 "" NA12156 nsv831277 8 29954486 30157355 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447011 S 95 1 0 "" nsv395926 8 29957081 29957827 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv414504 M 24 "" nsv517326 8 30004340 30038184 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv688489,nssv651725,nssv678638,nssv691050,nssv671502,nssv699628 M 2026 0 6 "" nsv6138 8 30061264 30095696 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2785 S 9 1 0 "" NA18555 nsv6139 8 30123873 30169183 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8478 S 9 0 1 "" NA12156 nsv518061 8 30285744 30288664 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695472 S 2026 0 1 "" nsv526509 8 30305114 30620257 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702819 S 2026 1 0 "" nsv509260 8 30325576 30383038 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623533,nssv620905 M 4 2 0 "" NA15510,NA18994 nsv396470 8 30511820 30512123 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415048 M 24 "" nsv528908 8 30535526 30540139 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705593 S 2026 0 1 "" nsv516544 8 30655202 30680429 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv663202,nssv662239,nssv661356,nssv654368,nssv663063,nssv679571,nssv669045 M 2026 0 7 "" nsv519692 8 30819036 30822067 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696995 S 2026 1 0 "" nsv396112 8 30928094 30928365 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv414690 M 24 "" nsv527651 8 30973934 30976006 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704122 S 2026 0 1 "" nsv831278 8 31036526 31190448 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447013,nssv1447012 M 95 2 0 "" nsv465631 8 31266000 31293400 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541403 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00868 nsv507452 8 31296299 31302299 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620407,nssv617763,nssv621911,nssv623034 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv6140 8 31338113 31371627 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2786 S 9 1 0 "" NA18555 nsv831279 8 31384433 31577178 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447014 S 95 1 0 "" nsv397118 8 31418379 31418428 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415696 M 24 "" nsv6141 8 31565847 31597328 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5070 S 9 1 0 "" NA19129 nsv831280 8 31652473 31831039 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447015 S 95 0 1 "" nsv398284 8 31690784 31691136 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416862 M 24 "" nsv6142 8 31722271 31754432 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5071 S 9 1 0 "" NA19129 nsv831282 8 31891138 32062006 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447016 S 95 1 0 "" nsv528531 8 32057067 32062099 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705142 S 2026 0 1 "" nsv465632 8 32113352 32347468 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541404 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00654 nsv522780 8 32200083 32204713 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698422 S 2026 0 1 "" nsv518140 8 32217872 32234798 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695561 S 2026 0 1 "" nsv397244 8 32268942 32270165 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415822 M 24 "" nsv510140 8 32390138 32396138 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622158,nssv618287,nssv624063,nssv621332 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv526564 8 32437459 32439080 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702880 S 2026 0 1 "" nsv398013 8 32451733 32461657 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416591 M 24 "" nsv465633 8 32567884 32609852 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541405 S 1557 0 1 "" 1780862194_A nsv397271 8 32609628 32611159 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415849 M 24 "" nsv397437 8 32758267 32762736 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416015 M 24 "" nsv6144 8 32773134 32829181 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6212,nssv9746,nssv11182,nssv10614,nssv9458,nssv3640,nssv1730,nssv726,nssv5072 M 9 0 9 "" NA12156,NA12878,NA15510,NA18507,NA18517,NA18555,NA18956,NA19129,NA19240 nsv25 8 32780745 32824999 CNV Loss Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv25 S 1 0 1 "" NA15510 nsv397341 8 32793267 32796907 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415919 M 24 "" nsv8330 8 32799314 32811127 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19543,nssv19557,nssv16940 M 31 3 0 Samples from several populations that are part of the HapMap project. "" NA18504,NA18853,NA19132 nsv508501 8 32801153 32812935 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620006,nssv618830,nssv622593,nssv617359 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv442510 8 32802640 32807955 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv396742 8 33103053 33103106 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415320 M 24 "" nsv396773 8 33103184 33103233 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415351 M 24 "" nsv507453 8 33163204 33169204 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623035,nssv617764,nssv620408 M 4 3 0 "" CHM,NA15510,NA18994 nsv507454 8 33215829 33221829 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617765,nssv623037,nssv620409 M 4 3 0 "" CHM,NA15510,NA18994 nsv520975 8 33259628 33264445 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv685505,nssv679103,nssv684947 M 2026 0 3 "" nsv6145 8 33301704 33346328 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8479 S 9 0 1 "" NA12156 nsv465634 8 33326334 33385822 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541406 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00534 nsv6146 8 33482473 33527785 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8480 S 9 0 1 "" NA12156 esv2752251 8 33534036 34002284 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6981625,essv6987991,essv6989252,essv6987990,essv6981626 M 771 0 1 "" BEC_307 nsv398229 8 33548778 33552212 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416807 M 24 "" nsv398435 8 33553774 33555448 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv417013 M 24 "" nsv507455 8 33781784 33787784 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621912,nssv620410,nssv623038 M 4 3 0 "" NA10860,NA15510,NA18994 nsv508502 8 33811004 33920818 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618831,nssv620008 M 4 0 2 "" NA10860,NA15510 nsv507456 8 34130285 34136285 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620411 S 4 1 0 "" NA15510 nsv510980 8 34405006 34449914 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618662 S 4 0 0 "" CHM nsv507457 8 34418985 34424985 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620412,nssv621913,nssv623039 M 4 3 0 "" NA10860,NA15510,NA18994 nsv6147 8 34433571 34478666 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5073 S 9 0 1 "" NA19129 nsv507458 8 34490866 34496866 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621914 S 4 1 0 "" NA10860 nsv396306 8 34545731 34545794 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv414884 M 24 "" nsv831283 8 34620785 34782176 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447018 S 95 1 0 "" nsv525800 8 34687557 34734996 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701982 S 2026 1 0 "" nsv517906 8 34780638 34789074 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695318 S 2026 1 0 "" nsv6148 8 34789186 34833638 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4612 S 9 0 1 "" NA19129 nsv6149 8 34905751 34927810 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10615 S 9 1 0 "" NA18956 nsv517950 8 34916945 34923482 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695362 S 2026 0 1 "" nsv831284 8 35137961 35312626 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447019 S 95 1 0 "" nsv507459 8 35146611 35152611 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620413,nssv623040 M 4 2 0 "" NA15510,NA18994 nsv520421 8 35275059 35599010 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv671338,nssv689820 M 2026 2 0 "" nsv396482 8 35282685 35282843 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415060 M 24 "" nsv6150 8 35295436 35323852 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5074 S 9 1 0 "" NA19129 nsv831285 8 35605416 35767659 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447021,nssv1447020 M 95 0 2 "" nsv6151 8 35632820 35645402 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8481 S 9 0 1 "" NA12156 nsv6152 8 35655375 35688891 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5075 S 9 1 0 "" NA19129 nsv831286 8 35921930 36070128 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447022 S 95 0 1 "" nsv442104 8 36194697 36197883 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv6153 8 36310472 36355107 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5076 S 9 0 1 "" NA19129 nsv520391 8 36450669 36503989 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697387 S 2026 0 1 "" nsv6155 8 36526804 36571899 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5077 S 9 0 1 "" NA19129 nsv831287 8 36549946 36724532 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447023 S 95 1 0 "" esv2752252 8 36638511 36740746 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6989517,essv6981789 M 771 0 1 "" BEC_468 nsv831288 8 36772939 36927928 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447024 S 95 1 0 "" nsv6156 8 36978364 37023188 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8482 S 9 0 1 "" NA12156 nsv6157 8 37102716 37138450 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8483 S 9 0 1 "" NA12156 nsv6158 8 37111077 37141805 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1731 S 9 1 0 "" NA18555 nsv831289 8 37153187 37307820 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447025 S 95 1 0 "" nsv437614 8 37157791 37167392 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467495 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19202 nsv831290 8 37193795 37395020 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447026 S 95 1 0 "" nsv6159 8 37240663 37286146 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6214 S 9 0 1 "" NA12156 nsv831291 8 37399409 37535863 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447027 S 95 1 0 "" nsv831293 8 37418779 37607801 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447029 S 95 1 0 "" nsv522883 8 37458281 37463440 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698539 S 2026 0 1 "" nsv522913 8 37463664 37472939 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698573 S 2026 0 1 "" nsv831294 8 37481144 37696334 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447030 S 95 1 0 "" nsv6160 8 37483934 37518440 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5078 S 9 0 1 "" NA19129 nsv442106 8 37509143 37514234 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv509261 8 37743827 37858110 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620906 S 4 1 0 "" NA15510 nsv528524 8 37765824 37816032 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705134 S 2026 0 1 "" nsv528598 8 37780229 37836279 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705224 S 2026 0 1 "" nsv397948 8 37783219 37787844 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416526 M 24 "" nsv6161 8 37881844 37908396 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5079 S 9 1 0 "" NA19129 nsv397579 8 38152357 38157197 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416157 M 24 "" nsv438049 8 38227290 38229372 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv469823,nssv469822 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA10856,NA11882 nsv528419 8 38344506 38351031 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705011 S 2026 0 1 "" nsv831295 8 38463691 38632874 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447033,nssv1447032,nssv1447031,nssv1447034 M 95 1 3 "" nsv397414 8 38501785 38501785 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415992 M 24 "" nsv831296 8 38640387 38776969 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447035 S 95 1 0 "" nsv396891 8 38730581 38730581 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415469 M 24 "" nsv528721 8 38815153 38828710 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705375 S 2026 0 1 "" nsv465637 8 38873687 38917306 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541407 S 1557 0 1 "" NINDS_98 nsv522550 8 38901784 38918214 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705931 S 2026 0 1 "" nsv516960 8 38912839 38918214 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv689906,nssv657246,nssv662094,nssv660003,nssv672361,nssv672253,nssv656108,nssv686078,nssv684811,nssv663388,nssv674666,nssv661854,nssv673838,nssv693452,nssv659345,nssv653514,nssv688693,nssv682146,nssv690667,nssv667632,nssv679241,nssv663748,nssv688626,nssv670871,nssv656852,nssv667332 M 2026 0 26 "" nsv524818 8 39031963 39038564 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700812 S 2026 0 1 "" nsv6162 8 39078465 39111039 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5080 S 9 1 0 "" NA19129 nsv397485 8 39127613 39127710 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416063 M 24 "" nsv507460 8 39188097 39194097 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617766,nssv620414 M 4 2 0 "" CHM,NA15510 dgv2227e1 8 39293436 39577556 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv21565,essv2394,essv20830,essv20869,essv6848,essv19060,essv16606,essv18034,essv3314,essv3920,essv12884 M 271 0 0 "" NA06993,NA10855,NA11830,NA12145,NA12146,NA18502,NA18558,NA18948,NA18960,NA18976,NA19208 dgv2228e1 8 39295787 39440685 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv18822,essv1061,essv25136,essv24204,essv1557,essv3942,essv20834,essv11612,essv20511,essv18780,essv7630,essv21919,essv25055,essv6554,essv5621,essv24118,essv11366,essv11406,essv23701,essv23760,essv2735,essv23149,essv5069 M 271 0 0 "" NA07048,NA10831,NA10856,NA11829,NA11994,NA12057,NA12144,NA12248,NA12716,NA12740,NA12801,NA12891,NA18547,NA18570,NA18593,NA18624,NA18858,NA18965,NA18970,NA18975,NA18997,NA19192,NA19207 dgv2229e1 8 39326152 39548228 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv23318,essv5985,essv21368,essv5686,essv19486,essv16587,essv19324,essv15902,essv7952,essv520 M 271 0 0 "" NA10860,NA12264,NA12750,NA12872,NA18552,NA18605,NA18860,NA18952,NA19203,NA19205 esv33764 8 39341029 39341370 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98317,essv99840 M 51 0 2 "" 21772,22086 nsv528858 8 39344125 39350791 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705537 S 2026 0 1 "" nsv527334 8 39344125 39450167 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703759 S 2026 0 1 "" dgv146n17 8 39344125 39527585 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437068,nsv437066,nsv437616,nsv437615,nsv437070,nsv437067,nsv437071 M 60 0 7 "" NA06991,NA10838,NA10854,NA10855,NA12740,NA19205,NA19208 nsv508503 8 39345182 39498643 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617360 S 4 0 1 "" CHM nsv6163 8 39345232 39510046 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3641,nssv6215 M 9 0 2 "" NA12156,NA12878 nsv8331 8 39350826 39508063 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17235,nssv16817,nssv16586,nssv20294,nssv19032,nssv16372,nssv19587,nssv18661,nssv16069,nssv19573,nssv21180,nssv16922,nssv20003,nssv17467,nssv18029,nssv17568,nssv17155,nssv17848,nssv17134 M 31 15 4 Samples from several populations that are part of the HapMap project. "" NA07029,NA10839,NA11830,NA18502,NA18504,NA18517,NA18537,NA18563,NA18564,NA18572,NA18942,NA18972,NA18980,NA19007,NA19132,NA19144,NA19173,NA19221,NA19240 esv32816 8 39351386 39507955 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101521,essv98786,essv97579,essv101221,essv93826,essv100662,essv101095,essv101087,essv101063,essv95174,essv95121,essv94783,essv94092,essv101411,essv101318,essv101315,essv96876,essv95705,essv95431,essv93019,essv95385,essv97322,essv101630,essv101722,essv101698,essv95819,essv98996,essv99082,essv99098,essv92944,essv93677,essv96597,essv98627,essv100044,essv96051,essv93506,essv99714,essv92658,essv96527,essv99255,essv100503,essv100346,essv100306,essv100297,essv99422 M 51 0 34 "" 21603,21606,21616,21618,21634,21656,21693,21721,21791,21802,21805,21817,21841,21847,21863,21872,21879,21909,21911,21938,21939,21972,22011,22085,22086,22127,22128,22217,22233,22261,22275,22298,22300,22335 nsv433493 8 39351896 39497557 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463374 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA12156 nsv438050 8 39351896 39513212 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv469849,nssv469877,nssv469945,nssv469856,nssv469848,nssv469894,nssv469959,nssv469884,nssv469915,nssv469895,nssv469928,nssv469942,nssv469845,nssv469936,nssv469902,nssv469830,nssv469835,nssv469872,nssv469839,nssv469825,nssv469881,nssv469869,nssv469892,nssv469860,nssv469955,nssv469886,nssv469949,nssv469954,nssv469947,nssv469946,nssv469844,nssv469890,nssv469899,nssv469833,nssv469919,nssv469900,nssv469879,nssv469870,nssv469866,nssv469912,nssv469922,nssv469923,nssv469948,nssv469858,nssv469836,nssv469950,nssv469908,nssv469909,nssv469935,nssv469898,nssv469941,nssv469952,nssv469842,nssv469917,nssv469921,nssv469888,nssv469857,nssv469871,nssv469862,nssv469965,nssv469958,nssv469875,nssv469861,nssv469882,nssv469944,nssv469891,nssv469961,nssv469904,nssv469960,nssv469876,nssv469841,nssv469905,nssv469932,nssv469957,nssv469916,nssv469901,nssv469867,nssv469911,nssv469837,nssv469927,nssv469868,nssv469853,nssv469931,nssv469906,nssv469850,nssv469838,nssv469938,nssv469827,nssv469914,nssv469924,nssv469878,nssv469854,nssv469834,nssv469933,nssv469937,nssv469934,nssv469859,nssv469846,nssv469897,nssv469925,nssv469956,nssv469826,nssv469831,nssv469864,nssv469887,nssv469865,nssv469920,nssv469855,nssv469880,nssv469889,nssv469847,nssv469913,nssv469893,nssv469832,nssv469824,nssv469953,nssv469939,nssv469926,nssv469943,nssv469873,nssv469903,nssv469910,nssv469930,nssv469828,nssv469883,nssv469843 M 269 0 54 Samples from several populations that are part of the HapMap project. "" NA06985,NA06991,NA07048,NA07055,NA10831,NA10835,NA10838,NA10839,NA10846,NA10847,NA10851,NA10854,NA10855,NA10856,NA10860,NA10863,NA11829,NA11831,NA11839,NA11992,NA12004,NA12005,NA12006,NA12057,NA12144,NA12154,NA12155,NA12156,NA12239,NA12248,NA12249,NA12264,NA12716,NA12740,NA12750,NA12801,NA12802,NA12813,NA12814,NA12864,NA12872,NA12873,NA12875,NA12891,NA18524,NA18526,NA18858,NA18860,NA18942,NA18967,NA19203,NA19205,NA19207,NA19208 nsv442511 8 39354760 39506122 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv2230e1 8 39364955 39577487 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv3236,essv8853,essv14520,essv11488,essv22428,essv3574,essv2612,essv18401,essv51,essv1468,essv3479,essv4525,essv3878,essv16206,essv10732,essv24821,essv23988,essv20729,essv2456,essv23233,essv891,essv22040,essv5534,essv11876,essv15857,essv6154,essv8751,essv21595,essv22166,essv11199,essv7100,essv15255,essv12543,essv9890,essv4642,essv10001,essv7776,essv3377,essv5178,essv12157,essv8282,essv18646,essv5120,essv11100,essv20290,essv13680,essv541,essv11821,essv17470,essv21770,essv12778,essv13648,essv22536,essv9166,essv4547,essv14632,essv15115,essv20566,essv1006,essv303,essv10089,essv15749,essv4189,essv5475,essv15571,essv5352,essv3128,essv12310,essv14177,essv5146,essv7009,essv23109,essv4838,essv5785,essv4753,essv5929,essv12978,essv23171,essv10478,essv20186,essv23835,essv1243,essv16099,essv19342,essv16775,essv23495,essv16718,essv24675,essv22466,essv1931,essv12627,essv4885,essv1403,essv3046,essv4140,essv4222,essv17783,essv21475,essv14324,essv10535,essv18844,essv8935,essv820,essv14889,essv6316,essv14472,essv20344,essv14404,essv11979,essv6638,essv13171,essv17619,essv6759,essv11720,essv20455,essv23002,essv6943,essv2233,essv14739,essv10219,essv9602,essv10270,essv19122,essv25155,essv3750,essv4046,essv6260,essv4954,essv13041,essv4677,essv5044,essv8482,essv20695,essv17665,essv13845,essv23028,essv10627,essv4398,essv17288,essv13799,essv22524,essv10396,essv16321,essv25017,essv16947,essv6659,essv24569,essv23950,essv16396,essv14111,essv10913,essv15374,essv11768,essv18152,essv21159,essv5994,essv11435,essv19515,essv9752,essv19648,essv14809,essv10832,essv7735,essv7289,essv21965,essv15701,essv9701,essv15450,essv1519,essv21526,essv17176,essv12714,essv2344,essv17910,essv11005,essv1633,essv3803,essv7578,essv22355,essv24642,essv17095,essv3692,essv23143,essv2045,essv17995,essv12380,essv1217,essv16533,essv2901,essv21439,essv18567,essv793,essv22763,essv15997,essv8603,essv13530,essv9052,essv23293,essv1120,essv17229,essv144,essv2667,essv19786,essv24054,essv15494,essv21884,essv3284 M 271 0 0 "" NA06985,NA06991,NA06994,NA07000,NA07019,NA07022,NA07029,NA07034,NA07056,NA07348,NA07357,NA10830,NA10831,NA10835,NA10839,NA10846,NA10851,NA10857,NA10859,NA10861,NA11829,NA11832,NA11839,NA11881,NA11882,NA11992,NA11993,NA11995,NA12003,NA12005,NA12006,NA12043,NA12044,NA12144,NA12154,NA12155,NA12156,NA12234,NA12236,NA12239,NA12249,NA12264,NA12716,NA12717,NA12751,NA12752,NA12753,NA12761,NA12762,NA12802,NA12812,NA12814,NA12815,NA12864,NA12873,NA12875,NA12891,NA18500,NA18501,NA18503,NA18504,NA18505,NA18506,NA18507,NA18508,NA18515,NA18516,NA18517,NA18521,NA18522,NA18523,NA18524,NA18526,NA18529,NA18532,NA18537,NA18540,NA18542,NA18545,NA18550,NA18555,NA18561,NA18562,NA18563,NA18564,NA18566,NA18571,NA18573,NA18576,NA18577,NA18582,NA18592,NA18594,NA18603,NA18608,NA18609,NA18611,NA18612,NA18620,NA18621,NA18622,NA18623,NA18632,NA18633,NA18635,NA18636,NA18637,NA18852,NA18854,NA18855,NA18856,NA18857,NA18859,NA18861,NA18862,NA18863,NA18870,NA18871,NA18872,NA18912,NA18913,NA18914,NA18940,NA18942,NA18943,NA18944,NA18945,NA18947,NA18949,NA18951,NA18953,NA18956,NA18959,NA18961,NA18964,NA18966,NA18967,NA18968,NA18969,NA18972,NA18973,NA18974,NA18978,NA18980,NA18981,NA18987,NA18990,NA18991,NA18992,NA18994,NA18995,NA18998,NA18999,NA19000,NA19005,NA19007,NA19092,NA19093,NA19094,NA19098,NA19099,NA19100,NA19101,NA19102,NA19103,NA19119,NA19120,NA19127,NA19128,NA19129,NA19130,NA19131,NA19132,NA19137,NA19138,NA19139,NA19140,NA19141,NA19142,NA19143,NA19144,NA19145,NA19152,NA19153,NA19154,NA19159,NA19160,NA19161,NA19171,NA19172,NA19173,NA19193,NA19194,NA19200,NA19201,NA19202,NA19204,NA19206,NA19209,NA19210,NA19211,NA19221,NA19222,NA19223,NA19238,NA19239,NA19240 dgv2231e1 8 39364955 39716796 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv6379,essv19931 M 271 0 0 "" NA12813,NA18572 nsv437617 8 39379684 39424950 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467498 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18860 dgv2232e1 8 39394152 39440685 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv24360,essv5840,essv5653,essv22612,essv12030,essv18491,essv17676,essv20480,essv23636,essv18510,essv21901,essv13823,essv24544,essv22258,essv23721,essv25094,essv22717,essv19807,essv24440,essv24031,essv1982,essv24609,essv5649,essv25172,essv18020,essv22692,essv25074,essv19819,essv3247,essv21087 M 271 0 0 "" NA07055,NA10835,NA10838,NA10839,NA10847,NA10854,NA11831,NA11840,NA11992,NA12004,NA12154,NA12156,NA12239,NA12249,NA12763,NA12813,NA12814,NA12864,NA12865,NA12873,NA12875,NA12878,NA12892,NA18524,NA18526,NA18579,NA18853,NA18942,NA18967,NA19116 nsv831297 8 39420278 39553850 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447036 S 95 1 0 "" nsv433247 8 39421344 39497557 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463128 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA12878 dgv147n17 8 39421344 39524494 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437618,nsv437072 M 60 0 2 "" NA10860,NA18860 esv33750 8 39507846 39563631 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98730,essv99935 M 51 0 2 "" 21606,22086 nsv8332 8 39537529 39540575 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21210 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19221 nsv522716 8 39641770 39714136 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698346 S 2026 0 1 "" nsv510141 8 39645777 39651777 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618288,nssv622159 M 4 0 2 "" CHM,NA10860 nsv520045 8 39716485 39718817 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv680103,nssv677838,nssv697364,nssv680179,nssv660283,nssv680497,nssv682055,nssv682559,nssv660260 M 2026 3 6 "" nsv8333 8 39716554 39717095 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16952,nssv19603 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA07029,NA18504 nsv526355 8 39727788 39728783 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702648 S 2026 0 1 "" nsv6164 8 39831688 39832711 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6216 S 9 1 0 "" NA12156 nsv508505 8 39849251 39910488 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620009 S 4 0 1 "" NA15510 nsv398207 8 40180120 40188506 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416785 M 24 "" nsv510142 8 40201574 40207574 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618289 S 4 0 1 "" CHM nsv6166 8 40275861 40326682 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5081,nssv6217 M 9 0 2 "" NA12156,NA19129 dgv148n17 8 40295676 40312571 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437073,nsv437074 M 60 0 2 "" NA10831,NA10847 nsv8334 8 40301316 40309268 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16295,nssv18059 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA10847,NA19173 nsv515952 8 40301460 40310033 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv679703,nssv672121,nssv651961,nssv667483,nssv675517,nssv666358,nssv655873,nssv655460,nssv675614,nssv652331,nssv682409,nssv657247,nssv671837,nssv691004,nssv669290,nssv668193,nssv666330,nssv691409,nssv672837,nssv692571,nssv654655,nssv693712,nssv666957,nssv682041,nssv676800,nssv675326,nssv685830,nssv654581,nssv659678,nssv674150,nssv673644,nssv661357,nssv684948,nssv687017,nssv653220,nssv661433,nssv678523,nssv661970,nssv657766,nssv667166,nssv669666,nssv672098,nssv691408,nssv665850,nssv652412,nssv676348,nssv659549,nssv690187,nssv671955,nssv675781,nssv676512,nssv681324,nssv690843,nssv653989,nssv683409,nssv693248,nssv658342,nssv690505,nssv680948,nssv672292,nssv652752,nssv664054,nssv675356,nssv677346,nssv652568,nssv661950,nssv684236,nssv674355,nssv655744,nssv688473,nssv666727,nssv670872,nssv655438,nssv689725,nssv652700,nssv651857,nssv685740,nssv689010,nssv685609,nssv664493,nssv691497,nssv678364,nssv671436,nssv657226,nssv690425,nssv664811,nssv664839,nssv656485,nssv681986,nssv674266,nssv663567,nssv692077,nssv659392,nssv661244,nssv674288,nssv685920,nssv693733,nssv689989,nssv678626,nssv655893,nssv672201,nssv688378,nssv667906,nssv679389,nssv654792,nssv684122,nssv691603,nssv674211,nssv665072,nssv688919,nssv661801,nssv690637,nssv684747,nssv665188,nssv671977,nssv670356,nssv668367,nssv670991,nssv682250,nssv692232,nssv657944,nssv679632,nssv678958,nssv657895,nssv657013,nssv692696,nssv673171,nssv690989,nssv664343,nssv688781,nssv691838,nssv669948,nssv660111,nssv676528,nssv662843,nssv660463,nssv652228,nssv692272,nssv668032,nssv653874,nssv686344,nssv691468,nssv659120,nssv674728,nssv688853,nssv653397,nssv667811,nssv667853,nssv659645,nssv678038,nssv667237,nssv667610,nssv672604,nssv686571,nssv655956,nssv659514,nssv676025,nssv684448,nssv671278,nssv677973,nssv680312,nssv652832,nssv665422,nssv660261,nssv668623,nssv683202,nssv670034,nssv677800,nssv692183,nssv658313,nssv675136,nssv670502,nssv662725,nssv686376,nssv679366,nssv673936,nssv668465,nssv677996,nssv670146,nssv680121,nssv688117,nssv693222,nssv678231,nssv657542,nssv660146,nssv684960,nssv682215,nssv672542,nssv688732,nssv667670,nssv677828,nssv691720,nssv692738,nssv662550,nssv690056,nssv677548,nssv667930,nssv668071 M 2026 0 198 "" nsv508506 8 40302120 40309731 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617361 S 4 0 1 "" CHM nsv442512 8 40302954 40308668 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv438051 8 40303569 40308706 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv469967,nssv469968,nssv469966,nssv469969 M 269 0 4 Samples from several populations that are part of the HapMap project. "" NA10831,NA10847,NA12156,NA12239 nsv818619 8 40304748 40308096 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415665,nssv1416569,nssv1418383,nssv1416570,nssv1415664,nssv1415850,nssv1418382 M 112 0 7 "" NA10835,NA10847,NA12239,NA12248,NA19140,NA19171,NA19173 esv33641 8 40560906 40575649 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv95663 S 51 1 0 "" 21841 esv33198 8 40588917 40590960 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100723 S 51 0 1 "" 21656 esv33015 8 40593623 40593786 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98130,essv96972,essv97145,essv100433 M 51 4 0 "" 21772,21817,22075,22300 nsv519446 8 40603396 40609019 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696858 S 2026 1 0 "" nsv523192 8 40634761 40658513 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698908 S 2026 1 0 "" nsv523193 8 40790271 40794888 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698909 S 2026 1 0 "" nsv465638 8 40822524 40859630 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541408 S 1557 0 1 "" 1798860372_A nsv522210 8 40841485 40912690 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694986 S 2026 0 1 "" nsv6167 8 40882037 40907073 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6218,nssv3642,nssv1732,nssv5082 M 9 0 4 "" NA12156,NA12878,NA18555,NA19129 nsv508507 8 40892696 40987090 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618832 S 4 0 1 "" NA10860 nsv396419 8 41003596 41003596 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv414997 M 24 "" nsv831298 8 41198833 41337788 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447038,nssv1447037 M 95 1 1 "" nsv438052 8 41226502 41227279 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv469970 S 269 0 1 Samples from several populations that are part of the HapMap project. "" NA18632 esv33397 8 41240377 41347615 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98081 S 51 0 1 "" 22259 nsv397308 8 41398502 41398824 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415886 M 24 "" nsv831299 8 41425293 41669161 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447040 S 95 0 1 "" nsv831300 8 41795492 41975651 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447041 S 95 0 1 "" nsv818620 8 41842707 41848950 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417289 S 112 0 1 "" NA18608 nsv521189 8 42027305 42033161 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697835 S 2026 0 1 "" nsv397995 8 42030309 42030937 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416573 M 24 "" nsv6168 8 42069647 42114305 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3643 S 9 0 1 "" NA12878 nsv398046 8 42159064 42168674 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416624 M 24 "" nsv831301 8 42220755 42450341 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447042 S 95 0 1 "" nsv508508 8 42233277 42332154 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617362,nssv622594,nssv618833 M 4 0 3 "" CHM,NA10860,NA18994 nsv6169 8 42275666 42319254 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1733,nssv6219,nssv3644 M 9 0 3 "" NA12156,NA12878,NA18555 nsv398024 8 42292598 42301196 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416602 M 24 "" nsv396143 8 42309547 42313509 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv414721 M 24 "" nsv397871 8 42324131 42324131 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416449 M 24 "" nsv396084 8 42391327 42400781 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv414662 M 24 "" nsv6170 8 42470922 42502299 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5083 S 9 1 0 "" NA19129 nsv397520 8 42705051 42705395 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416098 M 24 "" nsv6171 8 42827761 42861632 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv727 S 9 1 0 "" NA19240 nsv831302 8 43028640 43224677 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447043 S 95 0 1 "" dgv883n27 8 43143782 43910848 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv465640,nsv465642,nsv465643,nsv465641,nsv465645 M 1557 5 0 "" HGDP00258,HGDP00608,HGDP00650,HGDP00694,HGDP00776 nsv519841 8 43143782 43910848 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv689990,nssv662225,nssv671799,nssv686284,nssv687308,nssv692040,nssv658988,nssv704757,nssv688817,nssv691410,nssv701354,nssv685362 M 2026 2 10 "" nsv465644 8 43206085 43405534 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541414 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00587 nsv509262 8 43211620 43219338 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623534,nssv619525 M 4 2 0 "" NA10860,NA18994 nsv510143 8 43216338 43222338 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621333 S 4 0 1 "" NA15510 nsv510144 8 43230193 43236193 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622160,nssv624064 M 4 0 2 "" NA10860,NA18994 esv2752256 8 43618300 43820300 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6983630,essv6989834 M 771 0 1 "" BEC_674 nsv465652 8 43658198 43910848 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541417 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00624 nsv465654 8 43689385 43868883 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541418 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00286 nsv465656 8 43746145 43868883 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541419 S 1557 0 1 "" NINDS_259 nsv465658 8 43765570 43811979 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541420 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00798 nsv465662 8 43770263 43831744 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541422 S 1557 0 1 "" 1798860336_A dgv884n27 8 43770263 43910848 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv465664,nsv465663,nsv465665 M 1557 0 3 "" 1780854065_A,1798860280_A,HGDP00110 nsv516063 8 47062007 47859016 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv675245,nssv672779,nssv671503,nssv684878,nssv658399,nssv661004,nssv695868,nssv654214,nssv663689,nssv693391,nssv677632,nssv701099,nssv653291,nssv660919,nssv697854,nssv672838,nssv663552,nssv679633,nssv689135,nssv680366,nssv698565,nssv660044,nssv667013,nssv682503,nssv672150,nssv672151,nssv670084,nssv685625,nssv668692,nssv692273,nssv682216,nssv668745,nssv702321,nssv701513,nssv674760,nssv670133,nssv677780,nssv701098,nssv705174,nssv654924,nssv662637,nssv685677,nssv657467,nssv687189,nssv654717,nssv681923,nssv705949,nssv667303,nssv691280,nssv672362,nssv695656,nssv683605,nssv665404,nssv689835,nssv687466,nssv661527,nssv678978,nssv651836,nssv700278,nssv688565,nssv658158,nssv652267,nssv669615,nssv664621,nssv703638,nssv652464,nssv676704,nssv688097,nssv670791,nssv688035,nssv654196,nssv692908,nssv665942,nssv663256 M 2026 24 50 "" nsv831304 8 47102600 47282188 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447044,nssv1447045 M 95 0 2 "" nsv465666 8 47180142 47859016 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541426 S 1557 0 1 "" 1787431197_A nsv831305 8 47199356 47359806 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447048,nssv1447047,nssv1447046 M 95 0 3 "" nsv465667 8 47224322 47287319 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541427 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01330 nsv433400 8 47224322 47297374 CNV Gain Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463281 S 9 1 0 Samples from several populations that are part of the HapMap project. "" NA19240 dgv885n27 8 47229654 47309786 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv465673,nsv465670,nsv465674 M 1557 0 3 "" HGDP00862,HGDP00895,NINDS_70 dgv886n27 8 47287319 47400858 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv465677,nsv465675 M 1557 0 2 "" 1780854039_A,1780862573_A nsv831306 8 47345318 47541900 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447049 S 95 0 1 "" nsv509263 8 47384261 47481837 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619526 S 4 1 0 "" NA10860 dgv30e196 8 47497632 47562753 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array esv2422350,esv2422266 M 181 2 0 "" ND03938,ND04019 nsv831307 8 47520938 47714847 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447051 S 95 1 0 "" essv25128 8 47534345 47624665 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA10856 dgv2233e1 8 47609486 47672535 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv21602,essv23169 M 271 0 0 "" NA10831,NA12155 nsv831308 8 47610135 47803951 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447052,nssv1447053 M 95 2 0 "" nsv818621 8 47635787 47654762 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415667,nssv1418083,nssv1415668,nssv1416170,nssv1415666 M 112 5 0 "" NA10835,NA11881,NA12248,NA12249,NA12892 nsv8335 8 47637780 47688117 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17979,nssv17164,nssv18278 M 31 3 0 Samples from several populations that are part of the HapMap project. "" NA10839,NA12155,NA12740 esv33020 8 47645876 47658735 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93660,essv97223 M 51 2 0 "" 21972,22075 nsv442513 8 47646713 47655709 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv818623 8 47647579 47654762 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418084,nssv1418085,nssv1417915,nssv1417904,nssv1415971,nssv1415973 M 112 6 0 "" NA06985,NA06991,NA10859,NA11882,NA12740,NA12751 nsv6172 8 47647930 47652053 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3645 S 9 1 0 "" NA12878 essv25065 8 47649547 47684445 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12892 nsv6173 8 47707695 47720937 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8485 S 9 0 1 "" NA12156 nsv6174 8 47715564 47737784 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3646 S 9 1 0 "" NA12878 nsv6175 8 47875213 47904196 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10618 S 9 1 0 "" NA18956 nsv6177 8 47959526 48004032 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1734 S 9 0 1 "" NA18555 nsv6178 8 48178266 48199214 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv728 S 9 0 1 "" NA19240 nsv7416 8 48340588 48432534 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3647,nssv9747,nssv10619,nssv9459,nssv5085,nssv6220,nssv1736 M 9 0 0 "" NA12156,NA12878,NA18507,NA18517,NA18555,NA18956,NA19129 essv21712 8 48343375 48554996 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12248 nsv510981 8 48369506 48399560 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624325,nssv622387,nssv621608 M 4 0 0 "" NA10860,NA15510,NA18994 nsv507461 8 48379204 48385204 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617767 S 4 1 0 "" CHM nsv510145 8 48385621 48391621 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618290 S 4 0 1 "" CHM esv32677 8 48429387 48430698 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93642 S 51 0 1 "" 21972 nsv525063 8 48504523 48554848 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701115 S 2026 0 1 "" dgv2234e1 8 48950846 49170567 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv16629,essv14185 M 271 0 0 "" NA19140,NA19142 nsv6179 8 48957732 48979848 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8486 S 9 0 1 "" NA12156 nsv8337 8 48976779 48980097 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20033 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18972 nsv831309 8 48977843 49140409 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447054 S 95 0 1 "" nsv6180 8 48997304 49030117 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6221 S 9 1 0 "" NA12156 nsv8338 8 49079497 49084910 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20324,nssv19641,nssv17586,nssv20063,nssv15521,nssv17433,nssv19633,nssv18691,nssv17598,nssv18308,nssv18009,nssv16584,nssv16982 M 31 10 3 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10863,NA12155,NA12740,NA12872,NA18504,NA18517,NA18564,NA18860,NA18972,NA18975,NA19240 nsv398353 8 49184373 49186016 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416931 M 24 "" nsv396443 8 49200502 49200657 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415021 M 24 "" dgv91n68 8 49242730 49452762 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH nsv831310,nsv831311 M 95 14 0 "" nsv526887 8 49887252 49891573 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703245 S 2026 0 1 "" nsv528067 8 49932007 49942500 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704603 S 2026 0 1 "" nsv6181 8 50047895 50093067 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5086 S 9 0 1 "" NA19129 nsv6182 8 50218658 50253482 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv729 S 9 1 0 "" NA19240 nsv510146 8 50302028 50308028 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621335,nssv624065,nssv622161,nssv618291 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv396113 8 50363227 50365552 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv414691 M 24 "" dgv2235e1 8 50577786 50710060 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1067,essv3935 M 271 0 0 "" NA18970,NA18990 dgv251e55 8 50577800 50710060 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv34838,esv34784,esv34964 M 771 3 0 "" NA18570,NA18970,NA18990 dgv2236e1 8 50578416 50757620 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv7362,essv5070 M 271 0 0 "" NA18570 dgv2237e1 8 50578416 50819905 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2592,essv3995 M 271 0 0 "" NA18970,NA18990 nsv397980 8 50611627 50611719 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416558 M 24 "" nsv396971 8 50611835 50611938 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415549 M 24 "" nsv442515 8 50622571 50695376 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv6183 8 50787027 50793325 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3649 S 9 1 0 "" NA12878 nsv507462 8 50894569 50900569 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623042,nssv621915,nssv620415 M 4 3 0 "" NA10860,NA15510,NA18994 esv34788 8 51035800 51127991 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6978411,essv6978410 M 771 0 1 "" NA19093 essv8403 8 51035846 51131495 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19093 nsv818624 8 51045383 51107628 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418295 S 112 0 1 "" NA19093 essv14613 8 51049146 51223381 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19093 essv376 8 51049146 51300548 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18971 nsv6184 8 51160078 51222985 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1737,nssv11184,nssv8487 M 9 0 3 "" NA12156,NA15510,NA18555 nsv508509 8 51184390 51203941 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620010 S 4 0 1 "" NA15510 nsv26 8 51190334 51207434 CNV Loss Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv26 S 1 0 1 "" NA15510 nsv437619 8 51191924 51202265 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467500 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19202 nsv8339 8 51193335 51201438 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21240,nssv17497,nssv17878,nssv16129,nssv16325,nssv17463,nssv16614,nssv17616 M 31 0 8 Samples from several populations that are part of the HapMap project. "" NA07048,NA10847,NA10863,NA11830,NA18572,NA18975,NA19144,NA19221 nsv433494 8 51193774 51196070 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463375 S 9 0 1 "" NA15510 nsv442516 8 51194577 51195974 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv438053 8 51194778 51196571 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv469971,nssv469972 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA19201,NA19202 nsv8340 8 51248117 51249683 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19663 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18504 nsv8341 8 51286464 51293400 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19062 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18502 nsv524203 8 51323785 51351228 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700089 S 2026 1 0 "" nsv522665 8 51349159 51351228 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv706067 S 2026 1 0 "" nsv507463 8 51360175 51366175 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623043 S 4 1 0 "" NA18994 nsv6185 8 51376201 51399749 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1738 S 9 0 1 "" NA18555 nsv517030 8 51389781 51390059 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv653531,nssv663593,nssv666229,nssv670110,nssv656559,nssv664962,nssv686731,nssv666913,nssv676398,nssv674040,nssv682009,nssv672122,nssv691785,nssv682580,nssv673728,nssv677114,nssv675518,nssv684176,nssv656989,nssv659163,nssv663269,nssv655801,nssv665468,nssv692136,nssv672909,nssv689410,nssv657631,nssv652569,nssv693178,nssv654582,nssv679456,nssv673442,nssv677165,nssv685767,nssv667333,nssv662226,nssv690583,nssv690057,nssv683636,nssv675782,nssv677043,nssv668297,nssv666426,nssv658239,nssv681180 M 2026 0 45 "" nsv831312 8 51402325 51585397 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447071,nssv1447075,nssv1447070 M 95 3 0 "" dgv457n21 8 51418991 51419119 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv522554,nsv526909 M 2026 0 2 "" nsv525765 8 51432067 51447054 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701933 S 2026 0 1 "" nsv520800 8 51528506 51534463 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv675574,nssv693121 M 2026 0 2 "" nsv522428 8 51670112 51681799 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705782 S 2026 1 0 "" nsv521625 8 51895895 51922963 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698244 S 2026 0 1 "" esv34807 8 51900540 52046000 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6986726,essv6978849,essv6978850 M 771 1 0 "" NA12740 nsv6186 8 51901322 51935650 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2787 S 9 1 0 "" NA18555 dgv2238e1 8 51912593 52045960 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv19471,essv23711 M 271 0 0 "" NA12740,NA12750 nsv8342 8 51921580 52047444 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19122,nssv16644,nssv18039,nssv20123 M 31 1 3 Samples from several populations that are part of the HapMap project. "" NA12740,NA18502,NA18972,NA18975 nsv818625 8 51922963 52046480 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415974,nssv1415975 M 112 2 0 "" NA12740,NA12750 nsv465679 8 52046480 52352349 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541434 S 1557 1 0 "" 1780862345_A nsv397869 8 52186317 52186590 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416447 M 24 "" nsv398054 8 52223563 52223873 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416632 M 24 "" nsv6189 8 52308387 52353685 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8488 S 9 0 1 "" NA12156 nsv6190 8 52413749 52442990 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10621 S 9 1 0 "" NA18956 nsv831313 8 52621388 52801521 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447078,nssv1447077,nssv1447076 M 95 0 3 "" nsv516548 8 52656134 52678723 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv688379,nssv686045,nssv675137,nssv669080 M 2026 4 0 "" nsv398056 8 52682867 52683863 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416634 M 24 "" nsv6191 8 52804712 52826998 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5087 S 9 1 0 "" NA19129 nsv831316 8 52822906 53005481 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447079 S 95 1 0 "" nsv509265 8 52846516 52880480 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623537 S 4 1 0 "" NA18994 nsv526922 8 52935068 52949344 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703286 S 2026 0 1 "" nsv520947 8 53050094 53078547 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697703 S 2026 0 1 "" nsv507464 8 53069655 53075655 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623044,nssv617768,nssv620416 M 4 3 0 "" CHM,NA15510,NA18994 nsv831317 8 53408474 53575828 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447080 S 95 1 0 "" nsv507465 8 53547662 53553662 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621916 S 4 1 0 "" NA10860 nsv525936 8 53555854 53560664 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702142 S 2026 0 1 "" nsv465680 8 53579504 53668308 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541435 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00582 nsv521443 8 53656824 53661751 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698054 S 2026 0 1 "" nsv831318 8 53701152 53886240 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447081 S 95 0 1 "" nsv526722 8 53816100 53908391 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703062 S 2026 1 0 "" essv1731 8 53823346 54105603 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18997 nsv521012 8 53867668 53868361 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697735 S 2026 0 1 "" nsv525618 8 53890131 53917714 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701763 S 2026 1 0 "" essv1561 8 53897210 54039563 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18997 nsv523753 8 53908391 53911329 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699571 S 2026 0 1 "" esv35145 8 53908391 53996124 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6978288,essv6978289,essv6990218 M 771 1 0 "" NA18997 nsv516933 8 53997047 53998088 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv661919,nssv655051 M 2026 2 0 "" nsv525238 8 53997047 54104226 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701328 S 2026 1 0 "" nsv8343 8 54001673 54003346 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21270,nssv17493,nssv17527,nssv20153,nssv17185,nssv16159,nssv19617,nssv18721,nssv19693,nssv18149,nssv17646,nssv16970 M 31 0 12 Samples from several populations that are part of the HapMap project. "" NA07048,NA10863,NA11830,NA18504,NA18572,NA18853,NA18972,NA18980,NA19132,NA19173,NA19221,NA19240 nsv8344 8 54013425 54017062 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20183 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18972 nsv6192 8 54028743 54072770 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8490 S 9 0 1 "" NA12156 dgv887n27 8 54037306 54080020 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv465684,nsv465682 M 1557 2 0 "" 1780862530_A,HGDP01375 nsv8345 8 54043738 54060425 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21300 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19221 nsv437620 8 54089687 54152959 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467501 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19205 essv12081 8 54090134 54163645 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19099 dgv2239e1 8 54102064 54153567 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv8545,essv9967,essv15186 M 271 0 0 "" NA18503,NA18504,NA19204 nsv8346 8 54112932 54158499 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19723 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18504 nsv442107 8 54122300 54154739 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv519261 8 54132195 54180766 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv685972,nssv655108,nssv671410,nssv686122,nssv680105,nssv660746,nssv658273,nssv658649 M 2026 0 8 "" nsv6193 8 54291711 54303676 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6223 S 9 1 0 "" NA12156 nsv397858 8 54301778 54301778 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416436 M 24 "" nsv438054 8 54315535 54323911 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv469974,nssv469973,nssv469976,nssv469978,nssv469977 M 269 0 5 Samples from several populations that are part of the HapMap project. "" NA18854,NA18860,NA19100,NA19103,NA19132 nsv6194 8 54317163 54348317 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6224 S 9 1 0 "" NA12156 nsv527486 8 54356785 54372682 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703933 S 2026 0 1 "" dgv2240e1 8 54637142 54900026 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv7595,essv5337 M 271 0 0 "" NA18545,NA18563 nsv509266 8 54648001 54746737 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623538 S 4 1 0 "" NA18994 essv22151 8 54995543 55179518 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA10857 nsv510147 8 55219480 55225480 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618292,nssv622162,nssv624066 M 4 0 3 "" CHM,NA10860,NA18994 nsv6195 8 55310413 55333231 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8491 S 9 1 0 "" NA12156 nsv437621 8 55364293 55374945 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467502 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19202 nsv818626 8 55371210 55371303 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416456 S 112 1 0 "" NA18516 dgv69n64 8 55371210 55373358 CNV Loss Wang_et_al_2007 17921354 SNP_array nsv818627,nsv818628,nsv818629 M 112 0 6 "" NA18515,NA18517,NA18856,NA18857,NA19192,NA19194 nsv517041 8 55371210 55373358 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv665642,nssv652849,nssv676190,nssv658650,nssv684059,nssv686174,nssv659624,nssv661702,nssv661920,nssv675039,nssv656829,nssv686854,nssv653350,nssv688782,nssv673103,nssv660808,nssv680727,nssv678085,nssv692341,nssv662066,nssv685973,nssv656817,nssv682530,nssv659317,nssv676438,nssv660747,nssv679106,nssv680926,nssv666914,nssv689278,nssv658082,nssv663594,nssv663913,nssv653542,nssv693950,nssv668693,nssv653227,nssv689227,nssv659791,nssv685218,nssv666577,nssv683606,nssv681865,nssv676457,nssv684203,nssv657330,nssv654583,nssv680785,nssv658036,nssv693673,nssv675783,nssv693417,nssv686886,nssv659584,nssv657518,nssv680865,nssv665003,nssv674518,nssv683719,nssv656560,nssv679015,nssv674813,nssv655109,nssv655700,nssv687657,nssv654741,nssv668395,nssv674843,nssv658274,nssv653069,nssv663140,nssv668868,nssv661343,nssv684416,nssv658466,nssv659646,nssv689530,nssv666840,nssv664327,nssv653559,nssv652546,nssv682916,nssv690807,nssv687236,nssv675287,nssv691135,nssv687879,nssv672277,nssv654026,nssv679885,nssv666087 M 2026 0 91 "" nsv437622 8 55371210 55374945 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467503 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18515 nsv442517 8 55371599 55373373 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv888n27 8 55371601 55373358 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv465686,nsv465685,nsv465687,nsv465688 M 1557 0 4 "" HGDP00199,HGDP00554,HGDP00925,HGDP01276 nsv7417 8 55444950 55608496 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10622 S 9 0 0 "" NA18956 nsv438055 8 55527137 55536440 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv469979,nssv469980 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA19128,NA19172 dgv458n21 8 55566337 55568807 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv518856,nsv517989 M 2026 0 2 "" nsv509267 8 55586555 55634546 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623539 S 4 1 0 "" NA18994 nsv507466 8 55627119 55633119 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620417 S 4 1 0 "" NA15510 nsv6196 8 55704652 55714020 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8492 S 9 0 1 "" NA12156 nsv6197 8 55720469 55725676 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5088 S 9 1 0 "" NA19129 nsv8348 8 56244078 56614476 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19671 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18860 nsv6198 8 56277606 56322879 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8493 S 9 0 1 "" NA12156 nsv525982 8 56520828 56529289 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702201 S 2026 0 1 "" nsv516136 8 56543364 56565461 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv689411,nssv663314,nssv680544,nssv681425,nssv678857,nssv666443,nssv700712,nssv687467,nssv705842 M 2026 1 8 "" nsv398441 8 56563772 56564087 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv417019 M 24 "" esv32815 8 56670290 56672458 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99780 S 51 1 0 "" 22086 nsv6200 8 56723951 56755832 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8494 S 9 1 0 "" NA12156 dgv459n21 8 56751982 57105693 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv523483,nsv525361 M 2026 2 0 "" nsv527341 8 56754845 56970812 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703767 S 2026 1 0 "" esv2422388 8 56782207 56887550 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161337 S 181 1 0 "" ND04069 dgv245n6 8 56838832 56838962 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv396121,nsv396270 M 24 "" nsv510148 8 56850012 56856012 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618293 S 4 0 1 "" CHM dgv889n27 8 56874267 57038773 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv465691,nsv465692,nsv465690 M 1557 3 0 "" 1780854477_A,1780862082_A,NINDS_186 esv2752257 8 56942200 57045000 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6985606,essv6985605,essv6981553,essv6981552,essv6981551 M 771 1 0 "" BEC_299 nsv522326 8 56985962 57008823 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695107 S 2026 1 0 "" nsv527033 8 57006484 57008823 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703408 S 2026 0 1 "" nsv831319 8 57031842 57210565 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447082 S 95 1 0 "" nsv507467 8 57073814 57079814 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623045 S 4 1 0 "" NA18994 nsv524526 8 57079720 57190661 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700475 S 2026 0 1 "" nsv398124 8 57129871 57130023 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416702 M 24 "" nsv525972 8 57149291 57158229 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702188 S 2026 0 1 "" nsv516227 8 57157874 57158229 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv660809,nssv666958 M 2026 0 2 "" nsv442108 8 57212475 57256905 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv433401 8 57233890 57259395 CNV Gain Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463282 S 9 1 0 Samples from several populations that are part of the HapMap project. "" NA12156 nsv397753 8 57462756 57462871 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416331 M 24 "" nsv6201 8 57497250 57510040 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8495 S 9 0 1 "" NA12156 nsv6202 8 57640125 57676061 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8496 S 9 0 1 "" NA12156 nsv831320 8 57642465 57808196 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447083 S 95 0 1 "" nsv6203 8 57677734 57711171 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3650 S 9 1 0 "" NA12878 nsv438056 8 57781260 57791776 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv469981 S 269 0 1 Samples from several populations that are part of the HapMap project. "" NA18500 nsv6204 8 57857456 57902747 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8497 S 9 0 1 "" NA12156 nsv527346 8 57870488 57878293 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703773 S 2026 0 1 "" nsv509268 8 57923536 57961918 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623540 S 4 1 0 "" NA18994 essv6717 8 58092946 58378511 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18608 dgv246n6 8 58125976 58131991 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv395875,nsv395797 M 24 "" nsv8349 8 58126633 58132346 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18179 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19173 nsv509270 8 58129179 58156670 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619529,nssv620908 M 4 2 0 "" NA10860,NA15510 nsv508510 8 58129582 58156670 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622595 S 4 0 1 "" NA18994 nsv510982 8 58129582 58169050 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618663 S 4 0 0 "" CHM nsv6205 8 58132701 58159311 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3651,nssv730,nssv10623,nssv1739,nssv5089,nssv8498 M 9 6 0 "" NA12156,NA12878,NA18555,NA18956,NA19129,NA19240 nsv8350 8 58152856 58154930 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17908 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19144 nsv509271 8 58181233 58181233 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623541 S 4 1 0 "" NA18994 dgv2241e1 8 58226061 58378511 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv14409,essv23861,essv305,essv20226,essv20034,essv4608,essv15484,essv3871,essv7337,essv534,essv910,essv16667,essv22073,essv2437,essv2491,essv216,essv2055,essv3145,essv8726,essv22173,essv16487,essv8652,essv14645,essv10880,essv10028,essv2984,essv4165,essv23011,essv6292,essv16087,essv6603,essv20439,essv19650,essv13194,essv13444,essv18654,essv9698,essv17952,essv2826,essv20359,essv13714,essv4830,essv12821,essv9185,essv10671,essv23496,essv10230,essv7823,essv10388,essv10167,essv16898,essv12260,essv10736,essv17796,essv6133,essv9051,essv5942,essv15577,essv18209,essv14197,essv20122,essv21871,essv9622,essv5808,essv18,essv24367,essv15762,essv19422,essv22641,essv11050,essv16354,essv4871,essv12300,essv3954,essv24480,essv9877,essv7548,essv15846,essv14316,essv11647,essv7219,essv14967,essv4629,essv13514,essv13786,essv4818,essv4078,essv6287,essv8944,essv15060,essv23353,essv24884,essv20884,essv17663,essv8133,essv24515,essv4423,essv13597,essv11967,essv7279,essv7433,essv1207,essv16957,essv17147,essv18840,essv9316,essv17293,essv22489,essv11424,essv19973,essv1732,essv24566,essv22462,essv8326,essv24987,essv3413,essv23433,essv23945,essv12507,essv4235,essv11589,essv21154,essv9454,essv18425,essv9771,essv15414,essv11162,essv19532,essv16767,essv21450,essv15699,essv12417,essv16248,essv11207,essv6742,essv12712,essv15285,essv18270,essv22376,essv5300,essv1450,essv23119,essv3696,essv19002,essv12588,essv5228,essv16418,essv24066,essv419,essv10533,essv2888,essv6922,essv22859,essv1967,essv2180,essv14784,essv15376,essv23593,essv6992,essv11950,essv1151,essv17706,essv2280,essv11792,essv17443,essv14109,essv22209,essv4442 M 271 0 0 "" NA07000,NA07022,NA07034,NA07048,NA07345,NA10830,NA10831,NA10839,NA10846,NA10854,NA10857,NA10859,NA11831,NA11839,NA11840,NA11881,NA11882,NA11992,NA12003,NA12005,NA12006,NA12043,NA12044,NA12056,NA12057,NA12144,NA12154,NA12234,NA12236,NA12264,NA12707,NA12717,NA12750,NA12751,NA12752,NA12760,NA12761,NA12801,NA12802,NA12812,NA12813,NA12814,NA12815,NA12864,NA12872,NA12875,NA12891,NA18502,NA18504,NA18505,NA18507,NA18517,NA18523,NA18524,NA18532,NA18540,NA18545,NA18547,NA18550,NA18552,NA18555,NA18558,NA18561,NA18562,NA18563,NA18566,NA18570,NA18573,NA18592,NA18594,NA18603,NA18605,NA18609,NA18611,NA18612,NA18620,NA18621,NA18623,NA18635,NA18636,NA18853,NA18855,NA18856,NA18857,NA18861,NA18862,NA18863,NA18870,NA18871,NA18872,NA18912,NA18913,NA18914,NA18944,NA18945,NA18947,NA18948,NA18949,NA18951,NA18952,NA18953,NA18959,NA18960,NA18964,NA18966,NA18970,NA18978,NA18981,NA18987,NA18991,NA18994,NA18997,NA18998,NA18999,NA19000,NA19003,NA19012,NA19092,NA19093,NA19094,NA19098,NA19099,NA19100,NA19101,NA19102,NA19103,NA19119,NA19120,NA19127,NA19128,NA19129,NA19130,NA19131,NA19132,NA19137,NA19138,NA19139,NA19140,NA19141,NA19142,NA19143,NA19144,NA19145,NA19152,NA19153,NA19154,NA19159,NA19160,NA19161,NA19171,NA19173,NA19192,NA19193,NA19194,NA19200,NA19203,NA19204,NA19205,NA19206,NA19207,NA19208,NA19210,NA19211,NA19222,NA19223,NA19238,NA19239,NA19240 essv23829 8 58226061 58525998 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12763 nsv831321 8 58249439 58400298 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447092,nssv1447089,nssv1447090,nssv1447106,nssv1447095,nssv1447091,nssv1447105,nssv1447104,nssv1447108,nssv1447094,nssv1447093,nssv1447084,nssv1447098,nssv1447097,nssv1447088,nssv1447099,nssv1447103,nssv1447087,nssv1447100,nssv1447086,nssv1447101,nssv1447102 M 95 16 6 "" nsv509272 8 58273475 58297411 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619530,nssv620909,nssv618071,nssv623542 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv8351 8 58274186 58300991 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17676,nssv16402,nssv17224,nssv19701,nssv17523,nssv17215,nssv17938,nssv17968,nssv19731,nssv20354,nssv17628,nssv16847,nssv21330,nssv18751,nssv16674,nssv18129,nssv16180,nssv18811,nssv16355,nssv19783,nssv17265,nssv20213,nssv18338,nssv16616,nssv17000,nssv17557,nssv19677,nssv17326,nssv19647,nssv15581,nssv15551,nssv18209,nssv16150,nssv17658,nssv17194,nssv16189,nssv18368,nssv17030,nssv17012,nssv19152 M 31 30 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10847,NA10863,NA11830,NA12155,NA12740,NA12802,NA12872,NA18502,NA18504,NA18517,NA18537,NA18552,NA18563,NA18564,NA18572,NA18853,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19144,NA19173,NA19221,NA19240 nsv6206 8 58276684 58285605 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv11185,nssv9749,nssv10624,nssv1740,nssv731,nssv9460,nssv1741,nssv5091,nssv5090 M 9 7 0 "" NA15510,NA18507,NA18517,NA18555,NA18956,NA19129,NA19240 nsv442518 8 58279104 58292579 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv397205 8 58280824 58282177 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415783 M 24 "" esv33623 8 58280866 58306288 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv94332,essv95599,essv95445,essv99126,essv99197 M 51 5 0 "" 21808,21841,21847,21938,22275 nsv27 8 58281102 58283638 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv27 S 1 1 0 "" NA15510 nsv6207 8 58285663 58299667 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3652,nssv3653,nssv1742,nssv5092,nssv733,nssv9750,nssv9461,nssv5093,nssv11186 M 9 7 0 "" NA12878,NA15510,NA18507,NA18517,NA18555,NA19129,NA19240 nsv28 8 58285950 58287592 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv28 S 1 1 0 "" NA15510 nsv8352 8 58332402 58336742 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21360 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19221 nsv8353 8 58341760 58350868 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17553,nssv20384 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA07048,NA18517 nsv8354 8 58357174 58359706 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17356,nssv17583 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA07048,NA18552 dgv460n21 8 58468523 58735025 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv518178,nsv524390 M 2026 2 0 "" essv12251 8 58468949 58637003 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19101 nsv398466 8 58505955 58512469 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv417044 M 24 "" nsv6208 8 58507765 58552442 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9916,nssv8499,nssv5095 M 9 0 3 "" NA12156,NA18507,NA19129 nsv437623 8 58512321 58539057 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467504 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19129 nsv396987 8 58512483 58512749 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415565 M 24 "" nsv517684 8 58517980 58530376 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv683410,nssv682817,nssv678206,nssv668869,nssv692999,nssv668298,nssv688679,nssv682687,nssv674919,nssv667014,nssv687605,nssv693418,nssv656872,nssv664768,nssv664243,nssv674885,nssv662370,nssv666532,nssv653070,nssv667484,nssv667537,nssv677550,nssv654163,nssv691519,nssv690360,nssv674519,nssv678655,nssv688237,nssv683817,nssv673104 M 2026 0 30 "" nsv818630 8 58520049 58530376 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416652,nssv1417894,nssv1417892 M 112 0 3 "" NA18852,NA18854,NA19119 dgv32n14 8 58520505 58530376 CNV Loss Cooper et al 2008 18776910 SNP_array nsv433249,nsv433248 M 9 0 2 "" NA18507,NA19129 nsv442109 8 58520879 58529512 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv438057 8 58526557 58527676 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv469983,nssv469982 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA19127,NA19129 nsv831322 8 58551970 58713796 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447110,nssv1447109 M 95 1 1 "" nsv6209 8 58615975 58649154 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1743 S 9 1 0 "" NA18555 nsv6211 8 58817728 58852283 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3654 S 9 1 0 "" NA12878 nsv831323 8 58855102 59012416 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447111 S 95 1 0 "" nsv831324 8 59006705 59207863 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447112,nssv1447113 M 95 0 2 "" nsv526320 8 59300918 59310810 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702608 S 2026 0 1 "" essv723 8 59467844 59504885 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18940 nsv438058 8 59468387 59481002 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv469985,nssv469984 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA18940,NA19003 nsv6212 8 59598225 59614304 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1744 S 9 0 1 "" NA18555 nsv397168 8 59651547 59660430 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415746 M 24 "" nsv831325 8 59655134 59856997 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447114 S 95 1 0 "" nsv6213 8 59865620 59899741 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3655 S 9 1 0 "" NA12878 nsv526468 8 59962374 59976363 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702772 S 2026 0 1 "" nsv525018 8 60139388 60151133 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701057 S 2026 0 1 "" nsv831327 8 60170966 60321706 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447115 S 95 0 1 "" nsv6214 8 60182291 60215303 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1745 S 9 1 0 "" NA18555 nsv831328 8 60225525 60450830 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447125,nssv1447122,nssv1447124,nssv1447123,nssv1447116,nssv1447119,nssv1447120,nssv1447117,nssv1447121 M 95 9 0 "" nsv507468 8 60264095 60270095 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621917 S 4 1 0 "" NA10860 nsv507469 8 60305100 60311100 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623046,nssv620418,nssv617769 M 4 3 0 "" CHM,NA15510,NA18994 nsv831329 8 60325531 60518585 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447126 S 95 1 0 "" esv33211 8 60365961 60367522 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv95546 S 51 0 1 "" 21847 nsv831330 8 60432952 60676632 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447127 S 95 1 0 "" nsv6215 8 60602744 60646693 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6225 S 9 0 1 "" NA12156 nsv526889 8 60818748 60829785 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703247 S 2026 1 0 "" nsv397124 8 60827967 60828023 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415702 M 24 "" nsv831331 8 60932936 61122187 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447128 S 95 0 1 "" essv15945 8 61146767 61184397 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18515 nsv831332 8 61148154 61320284 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447130 S 95 1 0 "" nsv6216 8 61158290 61173423 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv734 S 9 0 1 "" NA19240 nsv8355 8 61158589 61170436 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18841 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19240 nsv433250 8 61159909 61168404 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463131 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA19240 nsv465693 8 61159909 61168404 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541446 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00904 nsv818631 8 61159909 61168404 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416851,nssv1416852,nssv1416366,nssv1416459,nssv1416460 M 112 0 5 "" NA18515,NA18516,NA18855,NA19238,NA19240 nsv517115 8 61159909 61171540 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv680063,nssv674447,nssv670056,nssv675784,nssv664861,nssv653228,nssv660748,nssv661703,nssv662521,nssv653809,nssv657797,nssv683969,nssv680728,nssv658651,nssv684039,nssv690826,nssv665643,nssv683065,nssv656873,nssv666489,nssv687606,nssv693081,nssv677141,nssv668947,nssv651962,nssv664751,nssv675575,nssv662371,nssv658522,nssv678524,nssv665190 M 2026 0 31 "" nsv438060 8 61164061 61168404 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv469987 S 269 0 1 Samples from several populations that are part of the HapMap project. "" NA18516 nsv442519 8 61165356 61170323 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" essv17394 8 61165748 61172818 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18855 nsv831333 8 61265416 61437676 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447132,nssv1447131 M 95 2 0 "" nsv396601 8 61265589 61266051 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415179 M 24 "" nsv831334 8 61311350 61492744 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447133 S 95 1 0 "" nsv396979 8 61367552 61367868 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415557 M 24 "" nsv523071 8 61404416 61436119 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698760 S 2026 0 1 "" nsv6217 8 61459231 61487656 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5096 S 9 1 0 "" NA19129 nsv6218 8 61647964 61693487 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6226 S 9 0 1 "" NA12156 nsv831335 8 61660094 61851546 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447134 S 95 0 1 "" nsv525495 8 61729209 61730764 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701627 S 2026 0 1 "" nsv526196 8 61756123 62040177 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702458 S 2026 1 0 "" nsv6219 8 61762324 61807112 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8500 S 9 0 1 "" NA12156 nsv397201 8 61850480 61850480 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415779 M 24 "" nsv521032 8 62020767 62030149 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv691531,nssv680272,nssv686572,nssv688695,nssv697545 M 2026 0 5 "" dgv890n27 8 62020767 62032203 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv465695,nsv465696 M 1557 0 2 "" HGDP01079,HGDP01378 nsv525076 8 62109521 62110127 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701131 S 2026 0 1 "" nsv465697 8 62126253 62188502 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541450 S 1557 1 0 "" 1780854061_A nsv527468 8 62156727 62157335 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703911 S 2026 0 1 "" nsv397049 8 62196885 62197682 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415627 M 24 "" nsv465698 8 62199347 62342019 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541451 S 1557 0 1 "" 1780854327_A nsv6220 8 62262750 62318559 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3656,nssv2789,nssv6227,nssv735 M 9 4 0 "" NA12156,NA12878,NA18555,NA19240 nsv509273 8 62273373 62305714 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618072,nssv620910,nssv623543 M 4 3 0 "" CHM,NA15510,NA18994 nsv396693 8 62282406 62282406 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415271 M 24 "" nsv397289 8 62282520 62282520 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415867 M 24 "" nsv6222 8 62319328 62325327 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv736 S 9 1 0 "" NA19240 nsv831336 8 62350950 62527427 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447135,nssv1447136 M 95 2 0 "" nsv523363 8 62402587 62408338 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699112 S 2026 0 1 "" nsv6223 8 62457458 62502542 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8501 S 9 0 1 "" NA12156 nsv521898 8 62527217 62581674 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694669 S 2026 1 0 "" nsv831338 8 62898948 63075602 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447137,nssv1447138 M 95 2 0 "" nsv528894 8 63048242 63048407 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705578 S 2026 0 1 "" nsv520442 8 63091269 63124625 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv678691,nssv702665,nssv671504 M 2026 0 3 "" nsv6224 8 63200745 63216818 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8502 S 9 1 0 "" NA12156 dgv2242e1 8 63318677 63422736 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv14950,essv12107 M 271 0 0 "" NA19132,NA19173 nsv818632 8 63371253 63385435 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416368,nssv1416367 M 112 0 2 "" NA18855,NA18857 nsv6225 8 63376794 63424839 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9751 S 9 0 1 "" NA18507 nsv8356 8 63377712 63388232 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18239,nssv19707,nssv19791 M 31 0 3 Samples from several populations that are part of the HapMap project. "" NA18860,NA19132,NA19173 dgv891n27 8 63378169 63385435 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv465699,nsv465700 M 1557 0 2 "" HGDP00915,HGDP01286 nsv517136 8 63378169 63385435 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv672099,nssv668073,nssv676332,nssv669988,nssv658688,nssv682076,nssv667167,nssv666886,nssv659212,nssv660947,nssv687468,nssv672340,nssv693971,nssv660856,nssv668826,nssv685324,nssv692393,nssv653876,nssv669206,nssv671384,nssv658275,nssv692137,nssv653841,nssv656716,nssv656373,nssv692042,nssv654337,nssv659792,nssv668194,nssv680949,nssv693122 M 2026 0 31 "" nsv818634 8 63378169 63385435 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415861,nssv1416758,nssv1416571,nssv1416574,nssv1416573 M 112 0 5 "" NA19141,NA19160,NA19171,NA19172,NA19173 nsv818635 8 63378169 63408237 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416853 S 112 0 1 "" NA19238 nsv442520 8 63380105 63386639 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" esv32676 8 63419477 63421608 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99821 S 51 0 1 "" 22086 nsv831339 8 63475003 63663681 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447139 S 95 1 0 "" nsv6226 8 63541269 63574484 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1748 S 9 1 0 "" NA18555 nsv396044 8 63656931 63656994 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv414622 M 24 "" nsv831340 8 63677680 63865214 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447141 S 95 0 1 "" nsv831341 8 63821248 64014767 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447142 S 95 0 1 "" nsv398473 8 63867643 63867643 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv417051 M 24 "" nsv521804 8 63867792 63920624 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694574 S 2026 0 1 "" nsv398476 8 63934635 63942003 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv417054 M 24 "" nsv398074 8 63945328 63945328 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416652 M 24 "" nsv515602 8 64010852 64011110 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv664055,nssv685005,nssv676951,nssv680950 M 2026 0 4 "" nsv6227 8 64054641 64099506 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8503 S 9 0 1 "" NA12156 nsv523048 8 64179435 64186259 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698731 S 2026 0 1 "" nsv523317 8 64182386 64186259 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699059 S 2026 0 1 "" nsv522934 8 64182386 64192456 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698597 S 2026 0 1 "" nsv527503 8 64190953 64192456 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703953 S 2026 0 1 "" nsv395793 8 64198865 64198994 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv414371 M 24 "" nsv831342 8 64246885 64457495 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447143,nssv1447152,nssv1447146,nssv1447145,nssv1447150,nssv1447148,nssv1447147,nssv1447149,nssv1447144 M 95 9 0 "" nsv6228 8 64415045 64416114 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9752 S 9 1 0 "" NA18507 nsv6229 8 64444572 64489084 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1749 S 9 0 1 "" NA18555 nsv831343 8 64598822 64804882 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447153 S 95 1 0 "" nsv831344 8 64820783 64874892 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447191,nssv1447190,nssv1447161,nssv1447189,nssv1447178,nssv1447160,nssv1447158,nssv1447192,nssv1447193,nssv1447154,nssv1447159,nssv1447157,nssv1447156,nssv1447155,nssv1447186,nssv1447169,nssv1447164,nssv1447165,nssv1447188,nssv1447163,nssv1447168,nssv1447166,nssv1447167,nssv1447172,nssv1447170,nssv1447171,nssv1447187,nssv1447174,nssv1447177,nssv1447176,nssv1447175,nssv1447180,nssv1447179,nssv1447181,nssv1447182,nssv1447183 M 95 0 36 "" nsv8357 8 64946114 65014629 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19737 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19132 nsv526321 8 65006365 65009964 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702609 S 2026 0 1 "" nsv438061 8 65012004 65013235 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv469989,nssv469988 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA19131,NA19132 nsv438062 8 65278431 65280359 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv469991,nssv469990 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA10861,NA11994 nsv507470 8 65397973 65403973 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617770 S 4 1 0 "" CHM nsv6230 8 65405123 65435790 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9462 S 9 0 1 "" NA18517 nsv442110 8 65409538 65420057 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv516030 8 65413437 65418673 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv693951,nssv684949,nssv665815,nssv677009,nssv672100,nssv672341 M 2026 0 6 "" nsv523097 8 65446245 65458045 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698789 S 2026 0 1 "" nsv510149 8 65569960 65575960 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622163 S 4 0 1 "" NA10860 nsv507471 8 65621018 65627018 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621918,nssv623047 M 4 2 0 "" NA10860,NA18994 nsv6231 8 65701147 65746177 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8505 S 9 0 1 "" NA12156 nsv831345 8 66151383 66325607 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447195,nssv1447194,nssv1447197 M 95 0 3 "" esv2752261 8 66151700 66463034 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6986172,essv6986171,essv6982438,essv6982437,essv6982436 M 771 1 0 "" BEC_442 nsv397355 8 66221408 66223855 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415933 M 24 "" nsv508511 8 66226085 66251788 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622597 S 4 0 1 "" NA18994 nsv471756 8 66473886 66474072 CNV Loss Hinds et al 2006 16327809 Oligo_aCGH,PCR Custom Perlegen arrays nssv646037 M 1.108 95 "" nsv510150 8 66516348 66522348 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622164 S 4 0 1 "" NA10860 nsv397599 8 66611712 66613094 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416177 M 24 "" nsv398101 8 66694929 66695588 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416679 M 24 "" nsv398351 8 66695598 66697801 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416929 M 24 "" nsv395879 8 66794286 66798330 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv414457 M 24 "" nsv395873 8 66798410 66799042 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv414451 M 24 "" dgv247n6 8 66799141 66799567 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv395822,nsv395829 M 24 "" dgv248n6 8 66799710 66801666 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv395858,nsv395821 M 24 "" nsv395795 8 66801756 66801958 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv414373 M 24 "" nsv395893 8 66809684 66814290 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv414471 M 24 "" nsv6233 8 66824538 66857499 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1750 S 9 1 0 "" NA18555 nsv6234 8 67029785 67050627 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3657 S 9 1 0 "" NA12878 nsv521159 8 67283489 67283897 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv683203,nssv684978 M 2026 0 2 "" nsv6235 8 67350635 67395291 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8506 S 9 0 1 "" NA12156 nsv397030 8 67451593 67451706 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415608 M 24 "" nsv396912 8 67451931 67452044 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415490 M 24 "" nsv6236 8 67521866 67566535 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5097 S 9 0 1 "" NA19129 nsv6237 8 67527076 67561603 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3658 S 9 1 0 "" NA12878 nsv465702 8 67538073 67547642 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541454 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01009 nsv395880 8 67544439 67544439 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv414458 M 24 "" nsv395907 8 67567524 67567634 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv414485 M 24 "" nsv516599 8 67586551 67594660 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv670792,nssv672649,nssv670085,nssv676705,nssv661163,nssv669463,nssv674761,nssv684979 M 2026 0 8 "" nsv831346 8 67649109 67837878 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447198 S 95 0 1 "" nsv6238 8 67846111 67865508 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5098 S 9 1 0 "" NA19129 nsv6239 8 67894273 67928447 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3659 S 9 1 0 "" NA12878 nsv438063 8 68152555 68155980 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv469999,nssv469995,nssv469998,nssv470000,nssv469994,nssv469996,nssv469993,nssv469992 M 269 0 8 Samples from several populations that are part of the HapMap project. "" NA18861,NA19100,NA19116,NA19119,NA19120,NA19130,NA19141,NA19211 esv2752263 8 68333500 68951047 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6986267,essv6986268,essv6982809,essv6982808,essv6988587 M 771 1 0 "" BEC_596 esv2752264 8 68407100 68809755 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6986207,essv6988557,essv6986208,essv6982597,essv6982596 M 771 1 0 "" BEC_569 nsv518005 8 68475372 68482222 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695418 S 2026 0 1 "" nsv6240 8 68594220 68628110 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8507 S 9 1 0 "" NA12156 nsv437625 8 68704404 68716767 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467506 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19145 nsv8359 8 68708618 68717788 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21390 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19221 nsv442521 8 68710013 68712760 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv524930 8 68828486 68839502 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700943 S 2026 0 1 "" nsv831347 8 69012104 69196458 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447199 S 95 1 0 "" nsv6241 8 69048506 69077898 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv11187 S 9 1 0 "" NA15510 nsv507472 8 69072401 69078401 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620420,nssv617771,nssv621919 M 4 3 0 "" CHM,NA10860,NA15510 nsv396660 8 69167044 69167044 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415238 M 24 "" nsv396474 8 69190344 69190393 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415052 M 24 "" nsv471757 8 69260455 69260908 CNV Loss Hinds et al 2006 16327809 Oligo_aCGH,PCR Custom Perlegen arrays nssv646038 M 0.357 95 "" nsv6242 8 69332480 69362988 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5099 S 9 1 0 "" NA19129 nsv519469 8 69348080 69348830 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv673594,nssv688456,nssv656294,nssv663294,nssv660005 M 2026 5 0 "" nsv508512 8 69431348 69487086 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618834 S 4 0 1 "" NA10860 nsv397515 8 69580222 69580543 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416093 M 24 "" nsv520587 8 69692982 69698176 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697505 S 2026 0 1 "" nsv831349 8 69718015 69896069 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447200,nssv1447201 M 95 2 0 "" nsv818636 8 69799153 69804759 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417895 S 112 1 0 "" NA18852 nsv465703 8 69803841 69977132 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541455 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01169 nsv519549 8 69844942 69850406 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv688898,nssv656830,nssv683154 M 2026 3 0 "" nsv465704 8 69907620 69977132 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541456 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00950 nsv523414 8 69924814 69927069 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699165 S 2026 0 1 "" esv33049 8 69999367 70105914 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99024 S 51 1 0 "" 21938 esv33773 8 70113797 70114754 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99407 S 51 1 0 "" 22335 nsv437626 8 70362698 70372315 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467507 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19205 nsv515701 8 70364259 70368717 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv664963,nssv689076,nssv669178,nssv686657,nssv671162,nssv669327,nssv664464,nssv669949,nssv686326,nssv681631,nssv659318,nssv688058,nssv680405,nssv655802 M 2026 0 14 "" nsv519220 8 70392524 70416984 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696710 S 2026 1 0 "" nsv528599 8 70398027 70400478 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705225 S 2026 0 1 "" nsv518901 8 70398027 70416984 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696359 S 2026 0 1 "" nsv518857 8 70414584 70416984 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696311 S 2026 0 1 "" nsv398144 8 70519876 70520191 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416722 M 24 "" dgv892n27 8 70586825 70627467 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv465707,nsv465706 M 1557 2 0 "" HGDP00952,HGDP00961 dgv92n68 8 70634717 70820687 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH nsv831351,nsv831350 M 95 0 3 "" nsv6244 8 70741850 70776656 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8508 S 9 0 1 "" NA12156 esv33249 8 70807060 70857490 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98325 S 51 0 1 "" 21772 nsv520987 8 70932975 70933356 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697723 S 2026 0 1 "" nsv818637 8 70967071 70980566 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417154 S 112 1 0 "" NA18542 nsv465709 8 70980566 71020425 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541460 S 1557 1 0 "" 1780862461_A nsv527289 8 70990827 71175365 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703704 S 2026 1 0 "" nsv528527 8 71000949 71011268 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705138 S 2026 0 1 "" nsv6245 8 71001509 71035499 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv737 S 9 1 0 "" NA19240 nsv508513 8 71022975 71188097 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620011 S 4 0 1 "" NA15510 nsv521702 8 71045914 71053342 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698325 S 2026 0 1 "" nsv831352 8 71074337 71257395 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447205 S 95 1 0 "" nsv465710 8 71108153 71124068 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541461 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00656 nsv438064 8 71109832 71123983 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470001,nssv470002 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA18913,NA18914 nsv6246 8 71181305 71211837 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1751 S 9 1 0 "" NA18555 nsv6247 8 71192903 71237806 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8509 S 9 0 1 "" NA12156 nsv397839 8 71275847 71278050 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416417 M 24 "" nsv6248 8 71351788 71396674 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8510 S 9 0 1 "" NA12156 nsv521190 8 71505331 71506986 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv690426,nssv684246 M 2026 0 2 "" nsv6249 8 71768265 71774730 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1752 S 9 0 1 "" NA18555 nsv520505 8 71778516 71779536 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697459 S 2026 0 1 "" nsv465711 8 72060927 72125965 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541462 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00635 nsv521495 8 72373732 72379585 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698109 S 2026 0 1 "" nsv8360 8 72376214 72380725 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17295,nssv18159,nssv19182,nssv16210,nssv17245,nssv17587 M 31 0 6 Samples from several populations that are part of the HapMap project. "" NA11830,NA12740,NA12802,NA18502,NA18537,NA18980 nsv471758 8 72377270 72380484 CNV Loss Hinds et al 2006 16327809 Oligo_aCGH,PCR Custom Perlegen arrays nssv646039 M 0.696 95 "" esv32722 8 72377373 72380559 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101603,essv98878,essv101217,essv94399,essv96882,essv95817,essv98961,essv93000,essv96626,essv98651,essv99722,essv100342,essv99479,essv98382 M 51 0 14 "" 21603,21606,21618,21808,21817,21911,21938,21939,22011,22085,22217,22300,22335,22352 nsv442522 8 72377865 72379153 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv465712 8 72378412 72379585 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541463 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01216 nsv818638 8 72378412 72379585 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417186,nssv1417601,nssv1415978,nssv1417043,nssv1415976,nssv1418008,nssv1415977,nssv1417641,nssv1418007,nssv1417118 M 112 0 10 "" NA06994,NA07348,NA07357,NA12740,NA12750,NA12751,NA18537,NA18558,NA18978,NA18992 nsv515719 8 72378412 72380736 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv690828,nssv656601,nssv683423,nssv678342,nssv658276,nssv661005,nssv661996,nssv689618,nssv655177,nssv692816,nssv668915,nssv690990,nssv666728,nssv664073,nssv690188,nssv677465,nssv670548,nssv691708,nssv683115,nssv675041,nssv677801,nssv665720,nssv688351,nssv688414,nssv658358,nssv671839,nssv674963,nssv678708,nssv683036,nssv653267,nssv665073,nssv653128,nssv662615,nssv656180,nssv693363,nssv666386,nssv693123,nssv667886,nssv652377,nssv683218,nssv687237,nssv674136,nssv652031,nssv652039,nssv692572,nssv653843,nssv668261,nssv688317,nssv686823,nssv652735,nssv669228,nssv653934,nssv688474,nssv692233,nssv688381,nssv688855,nssv665943,nssv655894,nssv659953,nssv684343,nssv681492,nssv677207,nssv689136,nssv667699,nssv658037,nssv663389,nssv668890,nssv673298,nssv681589,nssv655928,nssv687833,nssv689836,nssv684143,nssv678385,nssv668500,nssv672463,nssv670300,nssv683204,nssv654793,nssv676566,nssv660503,nssv674944,nssv658159,nssv675879,nssv660531,nssv662994,nssv685261,nssv689641,nssv691787,nssv689792,nssv685134,nssv656854,nssv685409,nssv676458,nssv683137,nssv671035,nssv673766,nssv652949,nssv686046,nssv659005,nssv693771,nssv688098,nssv686459,nssv691281,nssv661971,nssv668286,nssv666603,nssv663605,nssv655347,nssv659813,nssv661815,nssv661245,nssv686272,nssv652112,nssv678683,nssv655296,nssv676026,nssv685768,nssv662955,nssv686435,nssv689474,nssv653560,nssv663980,nssv690010,nssv660761,nssv681811,nssv653292,nssv676602,nssv684327,nssv659393,nssv705398,nssv664681,nssv682191,nssv669734,nssv669081,nssv684633 M 2026 1 135 "" nsv818639 8 72378412 72380736 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417732,nssv1415585,nssv1417217 M 112 0 3 "" NA12154,NA18576,NA19003 nsv465713 8 72378412 72384875 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541464 S 1557 0 1 "" 1780854219_A nsv6250 8 72551135 72568542 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9917,nssv5100 M 9 2 0 "" NA18507,NA19129 nsv6251 8 72644566 72676967 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5101 S 9 1 0 "" NA19129 nsv523845 8 72649282 72654792 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699679 S 2026 0 1 "" nsv397525 8 72785720 72785839 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416103 M 24 "" nsv396409 8 72844394 72844466 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv414987 M 24 "" nsv831353 8 72911346 73106987 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447206 S 95 0 1 "" esv33409 8 72917557 72923277 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97185 S 51 0 1 "" 22075 esv33654 8 72949037 72949290 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93783 S 51 0 1 "" 21972 esv32637 8 73000365 73000568 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93971,essv94379,essv95673,essv92882,essv97125,essv99679 M 51 6 0 "" 21802,21808,21841,21939,22075,22217 esv33298 8 73001619 73001987 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98394 S 51 0 1 "" 22352 nsv6252 8 73028509 73038854 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5102 S 9 1 0 "" NA19129 nsv526807 8 73157032 73161192 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703161 S 2026 0 1 "" nsv397593 8 73245449 73251563 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416171 M 24 "" nsv396639 8 73286429 73286506 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415217 M 24 "" nsv395812 8 73454515 73457808 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv414390 M 24 "" nsv517290 8 73489836 73491174 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv675042,nssv671731,nssv670669,nssv657602,nssv665484,nssv668034,nssv693972,nssv683066,nssv664465,nssv658083,nssv690025,nssv654215,nssv675655 M 2026 0 13 "" nsv524033 8 73606130 73607217 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699896 S 2026 0 1 "" nsv6253 8 73698538 73733627 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv738 S 9 1 0 "" NA19240 nsv526000 8 73749235 73798508 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702226 S 2026 1 0 "" esv33951 8 73761886 73765191 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97164 S 51 1 0 "" 22075 esv33601 8 73765036 73765191 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98334,essv99618 M 51 2 0 "" 21772,22217 nsv527962 8 73780154 73797426 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704472 S 2026 1 0 "" nsv465714 8 73780154 73805335 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541465 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00886 nsv438065 8 73786197 73798508 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470003 S 269 0 1 Samples from several populations that are part of the HapMap project. "" NA12873 nsv465715 8 73848086 73924759 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541466 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00782 nsv396083 8 73926011 73926011 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv414661 M 24 "" nsv6255 8 73930635 73986631 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9753,nssv739,nssv3660,nssv6228,nssv9463,nssv1753,nssv5103 M 9 0 7 "" NA12156,NA12878,NA18507,NA18517,NA18555,NA19129,NA19240 nsv398337 8 73950320 73956377 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416915 M 24 "" nsv831354 8 73980945 74139885 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447208 S 95 1 0 "" nsv6256 8 74188377 74204355 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8511 S 9 0 1 "" NA12156 nsv397813 8 74226127 74226127 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416391 M 24 "" nsv6257 8 74295314 74340069 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8512 S 9 0 1 "" NA12156 nsv516903 8 74331172 74337982 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv654794,nssv679687,nssv676191,nssv680786 M 2026 0 4 "" nsv465717 8 74334996 74345111 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541468 S 1557 0 1 "" 1780846005_A nsv396937 8 74464429 74473978 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415515 M 24 "" nsv524697 8 74509416 74511210 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700676 S 2026 0 1 "" nsv522502 8 74510907 74511210 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705870 S 2026 0 1 "" nsv6258 8 74551254 74561069 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8513 S 9 0 1 "" NA12156 nsv507473 8 74552881 74558881 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617772,nssv621920,nssv620421,nssv623048 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv395886 8 74723262 74724658 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv414464 M 24 "" nsv471760 8 74950257 74950433 CNV Loss Hinds et al 2006 16327809 Oligo_aCGH,PCR Custom Perlegen arrays nssv646041 M 0.402 95 "" nsv831355 8 75012726 75219332 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447209 S 95 0 1 "" nsv510151 8 75028460 75034460 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621336 S 4 0 1 "" NA15510 nsv396789 8 75050839 75050893 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415367 M 24 "" nsv528688 8 75061410 75062568 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705331 S 2026 0 1 "" nsv6259 8 75061481 75094342 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3661 S 9 1 0 "" NA12878 nsv521015 8 75199960 75204100 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv680828,nssv679836 M 2026 0 2 "" nsv515910 8 75249820 75317421 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv665255,nssv700210,nssv684495 M 2026 0 3 "" nsv6260 8 75467458 75509675 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5105,nssv9464 M 9 0 2 "" NA18517,NA19129 nsv433495 8 75478412 75490452 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463376 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA19129 nsv442523 8 75481738 75490149 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv508514 8 75518646 75546331 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618835,nssv622598 M 4 0 2 "" NA10860,NA18994 nsv6261 8 75519005 75559453 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4613,nssv1754 M 9 0 2 "" NA18555,NA19129 nsv396631 8 75537902 75537902 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415209 M 24 "" nsv396688 8 75564880 75564880 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415266 M 24 "" nsv510152 8 75844056 75850056 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624067 S 4 0 1 "" NA18994 nsv524736 8 75912537 75927270 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700727 S 2026 0 1 "" nsv519265 8 75927270 75929969 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv655136,nssv693650 M 2026 0 2 "" nsv520038 8 76167307 76172082 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697190 S 2026 0 1 "" nsv831356 8 76200653 76432889 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447210,nssv1447213,nssv1447212,nssv1447211,nssv1447215,nssv1447214 M 95 0 6 "" nsv525773 8 76227272 76252267 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701944 S 2026 0 1 "" nsv524160 8 76252267 76263163 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700039 S 2026 0 1 "" nsv516895 8 76263163 76273605 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv654742,nssv692394,nssv671956 M 2026 0 3 "" nsv396654 8 76272490 76272554 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415232 M 24 "" nsv396069 8 76289458 76289781 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv414647 M 24 "" nsv397746 8 76300690 76300746 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416324 M 24 "" nsv520966 8 76322923 76360794 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697712 S 2026 0 1 "" nsv524725 8 76322923 76390049 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700713 S 2026 0 1 "" nsv526310 8 76423553 76448650 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702594 S 2026 0 1 "" nsv519803 8 76445199 76448650 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv658778,nssv681751,nssv679720 M 2026 0 3 "" nsv831357 8 76533254 76729008 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447216 S 95 0 1 "" nsv831358 8 76556788 76582410 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447217 S 95 0 1 "" nsv465718 8 76606018 76639424 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541469 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01286 nsv465719 8 76637274 76682389 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541470 S 1557 0 1 "" 1782681086_A nsv395984 8 76737723 76737792 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv414562 M 24 "" nsv6262 8 76776343 76821235 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8514 S 9 0 1 "" NA12156 nsv397071 8 76777618 76777690 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415649 M 24 "" esv33077 8 76849619 77057229 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv94126 S 51 1 0 "" 21802 nsv831360 8 76923625 77046089 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447219 S 95 1 0 "" nsv831361 8 77032195 77193046 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447220 S 95 0 1 "" nsv526170 8 77162687 77168950 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702431 S 2026 0 1 "" nsv522503 8 77168950 77222036 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705871 S 2026 1 0 "" nsv396564 8 77378430 77378554 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415142 M 24 "" nsv397624 8 77499941 77500985 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416202 M 24 "" nsv831362 8 77525995 77677515 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447221 S 95 1 0 "" nsv398363 8 77699474 77705950 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416941 M 24 "" nsv522697 8 77948002 77954898 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv706108 S 2026 1 0 "" nsv515569 8 77997540 77997918 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv674920,nssv682896,nssv671656,nssv689412,nssv677010,nssv671800,nssv673414,nssv693952,nssv670187,nssv667015,nssv692395,nssv691136,nssv665888,nssv659407,nssv678285,nssv663933,nssv664270,nssv677115,nssv671957,nssv657603,nssv686123,nssv691891,nssv691498 M 2026 0 23 "" nsv397952 8 78095375 78101406 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416530 M 24 "" nsv831363 8 78530552 78685129 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447223,nssv1447222 M 95 1 1 "" nsv519653 8 78708196 78715231 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696974 S 2026 0 1 "" esv2752267 8 78824141 79158549 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6989614,essv6982364,essv6982363,essv6982362 M 771 0 1 "" BEC_427 nsv6263 8 78889410 78922903 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2790 S 9 1 0 "" NA18555 nsv525111 8 78911817 78990172 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701172 S 2026 0 1 "" nsv6264 8 79073042 79107254 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8515 S 9 1 0 "" NA12156 dgv461n21 8 79171163 79209250 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv526123,nsv525612 M 2026 2 0 "" nsv831364 8 79197324 79385874 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447225,nssv1447224 M 95 2 0 "" nsv831365 8 79291388 79444200 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447226 S 95 1 0 "" nsv471761 8 79313946 79314077 CNV Loss Hinds et al 2006 16327809 Oligo_aCGH,PCR Custom Perlegen arrays nssv646042 M 0.632 95 "" nsv6266 8 79319378 79364575 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8516 S 9 0 1 "" NA12156 nsv442111 8 79341169 79347883 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv818640 8 79381850 79386014 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417896 S 112 1 0 "" NA18852 nsv517866 8 79381850 79419904 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695270 S 2026 0 1 "" nsv396893 8 79424478 79424532 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415471 M 24 "" nsv397013 8 79762359 79762426 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415591 M 24 "" essv4456 8 79784789 79950902 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18552 esv33928 8 79910315 79913243 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv94469,essv98012 M 51 0 2 "" 21808,22259 essv5782 8 79962967 79974635 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18540 nsv507474 8 79964677 79970677 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620422 S 4 1 0 "" NA15510 essv5699 8 79972581 79977663 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18550 nsv6267 8 80015768 80026530 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8517 S 9 1 0 "" NA12156 nsv525364 8 80027705 80030823 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701484 S 2026 0 1 "" nsv6268 8 80450819 80474087 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2791 S 9 1 0 "" NA18555 nsv6269 8 80531530 80563202 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10626 S 9 1 0 "" NA18956 nsv523754 8 80798145 80802441 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699572 S 2026 0 1 "" nsv6270 8 80862614 80896977 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3662 S 9 1 0 "" NA12878 nsv397174 8 80966686 80966742 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415752 M 24 "" nsv397709 8 80966767 80966823 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416287 M 24 "" esv33694 8 81208515 81208907 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99744 S 51 1 0 "" 22217 nsv518684 8 81228135 81232410 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696133 S 2026 1 0 "" nsv6271 8 81344346 81345635 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2793 S 9 1 0 "" NA18555 nsv524281 8 81479936 81483150 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700180 S 2026 0 1 "" nsv6272 8 81501047 81545836 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8518 S 9 0 1 "" NA12156 nsv397562 8 81636489 81639590 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416140 M 24 "" nsv525842 8 81668403 81673151 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702035 S 2026 0 1 "" nsv525916 8 81672976 81680875 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702120 S 2026 0 1 "" nsv831366 8 81782690 81947898 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447227 S 95 0 1 "" nsv831367 8 82009609 82218790 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447228 S 95 1 0 "" nsv396304 8 82038964 82044914 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv414882 M 24 "" nsv397185 8 82409215 82409313 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415763 M 24 "" nsv6273 8 82445973 82479832 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8519 S 9 1 0 "" NA12156 nsv465721 8 82480411 82842822 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541471 S 1557 1 0 "" 1798860292_A nsv510153 8 82494684 82500684 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622165 S 4 0 1 "" NA10860 nsv520913 8 82498631 82498840 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv690844,nssv677634 M 2026 0 2 "" nsv438066 8 82542508 82543678 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470004,nssv470005 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA19204,NA19205 nsv6274 8 82586890 82618821 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6229 S 9 1 0 "" NA12156 nsv831368 8 82629716 82772185 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447230 S 95 1 0 "" nsv831369 8 82680623 82898376 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447232,nssv1447231 M 95 1 1 "" nsv6275 8 82681270 82714133 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3663 S 9 1 0 "" NA12878 nsv465722 8 82838100 82919646 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541472 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01077 nsv6277 8 82889873 82935384 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6230 S 9 0 1 "" NA12156 nsv398267 8 82917134 82921265 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416845 M 24 "" nsv831371 8 83044345 83220530 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447233 S 95 1 0 "" nsv508516 8 83109506 83115396 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620012 S 4 0 1 "" NA15510 nsv831372 8 83186370 83345110 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447234,nssv1447235 M 95 2 0 "" nsv6278 8 83295721 83329756 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2794 S 9 1 0 "" NA18555 nsv510154 8 83339473 83345473 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621337,nssv618294,nssv624068,nssv622166 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv519448 8 83420902 83443991 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696859 S 2026 0 1 "" nsv516905 8 83434235 83456427 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701148,nssv654818,nssv678639,nssv688818,nssv658484,nssv678563,nssv677208,nssv687113,nssv679554 M 2026 0 9 "" nsv465723 8 83474787 83567703 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541473 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01385 dgv462n21 8 83481896 83652299 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv527926,nsv528268 M 2026 0 2 "" nsv521034 8 83650750 83652299 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv686255,nssv680273 M 2026 0 2 "" nsv831373 8 83730189 83910311 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447236 S 95 1 0 "" dgv893n27 8 83850516 83891770 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv465725,nsv465724 M 1557 0 2 "" HGDP01185,NINDS_241 nsv398259 8 84163330 84163438 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416837 M 24 "" nsv524996 8 84182673 84286633 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701027 S 2026 0 1 "" nsv6279 8 84295183 84313082 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1755 S 9 1 0 "" NA18555 nsv465726 8 84317769 84417819 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541476 S 1557 0 1 "" NINDS_116 nsv465729 8 84381829 84489630 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541479 S 1557 0 1 "" 1782681115_A nsv465730 8 84426578 84490303 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541480 S 1557 0 1 "" 1780854449_A nsv397439 8 84512322 84512394 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416017 M 24 "" nsv508517 8 84633228 84644852 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618836 S 4 0 1 "" NA10860 nsv526890 8 84661995 84662096 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703248 S 2026 1 0 "" nsv398167 8 84689214 84689275 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416745 M 24 "" dgv894n27 8 84690825 84722898 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv465732,nsv465731 M 1557 0 2 "" HGDP00141,HGDP00926 nsv397667 8 84791587 84791643 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416245 M 24 "" nsv510155 8 84872301 84878301 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621338 S 4 0 1 "" NA15510 nsv508518 8 84926211 85012232 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618837 S 4 0 1 "" NA10860 nsv509274 8 84926211 85012232 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620911 S 4 1 0 "" NA15510 esv2752268 8 84967900 86064700 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6986283,essv6986284,essv6988593,essv6982849,essv6982848 M 771 1 0 "" BEC_604 nsv6280 8 85073583 85106022 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5106 S 9 1 0 "" NA19129 nsv397390 8 85121928 85122110 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415968 M 24 "" nsv523311 8 85189484 85194559 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699052 S 2026 1 0 "" nsv831374 8 85266159 85471531 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447237 S 95 0 1 "" nsv522543 8 85327376 85328338 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705923 S 2026 0 1 "" nsv6281 8 85419205 85434430 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv741 S 9 0 1 "" NA19240 dgv149n17 8 85420095 85434199 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437076,nsv437075 M 60 0 2 "" NA10851,NA12864 nsv8361 8 85423043 85432493 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17042,nssv20444,nssv16219,nssv16646,nssv18269,nssv19797,nssv17386,nssv17613,nssv17706,nssv17060,nssv19212,nssv19821,nssv16462,nssv17275,nssv18398,nssv18189,nssv17617,nssv17688,nssv17325,nssv16240,nssv17254,nssv16877,nssv20243,nssv16704 M 31 24 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10863,NA11830,NA12155,NA12740,NA12802,NA18502,NA18517,NA18537,NA18552,NA18563,NA18564,NA18572,NA18853,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19173 nsv438067 8 85423712 85428552 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470007,nssv470010,nssv470006,nssv470009 M 269 0 4 Samples from several populations that are part of the HapMap project. "" NA10851,NA12057,NA12864,NA12872 nsv442524 8 85425438 85431221 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv831375 8 85434907 85626176 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447238 S 95 1 0 "" dgv463n21 8 85477395 85493479 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv521782,nsv523312 M 2026 2 0 "" nsv6282 8 85587391 85594487 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5107 S 9 1 0 "" NA19129 nsv831376 8 85739977 85888866 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447239,nssv1447241,nssv1447242,nssv1447243,nssv1447244 M 95 5 0 "" nsv6283 8 85799293 85832288 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6232 S 9 1 0 "" NA12156 nsv397288 8 86242577 86244322 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415866 M 24 "" nsv831377 8 86450359 86631393 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447245,nssv1447248,nssv1447247,nssv1447268,nssv1447246,nssv1447290,nssv1447267,nssv1447249,nssv1447250,nssv1447258,nssv1447254,nssv1447288,nssv1447252,nssv1447253,nssv1447256,nssv1447257,nssv1447255,nssv1447266,nssv1447259,nssv1447261,nssv1447260,nssv1447289,nssv1447263,nssv1447264,nssv1447265,nssv1447269,nssv1447271,nssv1447275,nssv1447270,nssv1447291,nssv1447274,nssv1447287,nssv1447272,nssv1447277,nssv1447278,nssv1447276,nssv1447285,nssv1447280,nssv1447279,nssv1447283,nssv1447281,nssv1447286,nssv1447282 M 95 43 0 "" essv5478 8 86592730 86763703 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18632 dgv2243e1 8 86592730 86955528 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv12329,essv14410,essv15203,essv13144,essv666,essv1859,essv10541,essv5233,essv21263,essv18228,essv21538,essv3010,essv20797,essv2816,essv11964,essv24058,essv4679,essv11637,essv12391,essv11798,essv24252,essv3457,essv24704,essv23864,essv7605,essv10484,essv570,essv15120,essv4599,essv917,essv22584,essv1279,essv22071,essv5570,essv23264,essv16482,essv8740,essv221,essv14618,essv14860,essv12562,essv4853,essv16843,essv22990,essv18604,essv2197,essv12619,essv8192,essv24749,essv13665,essv1366,essv14981,essv23986,essv2481,essv24907,essv18846,essv17800,essv3144,essv280,essv10059,essv24379,essv6566,essv18363,essv7742,essv16148,essv9465,essv22855,essv22646,essv10160,essv9596,essv15820,essv17494,essv321,essv13606,essv7129,essv5170,essv10305,essv14748,essv12855,essv3298,essv8318,essv5349,essv1518,essv4420,essv4268,essv8872,essv23490,essv6231,essv14302,essv13740,essv6384,essv13468,essv18442,essv147,essv8926,essv11194,essv15378,essv15790,essv23376,essv10778,essv8093,essv20561,essv14479,essv19412,essv10360,essv14427,essv12282,essv19595,essv13044,essv9891,essv24502,essv17652,essv9331,essv21050,essv23042,essv5939,essv13909,essv8479,essv23669,essv10687,essv11237,essv22500,essv23793,essv20083,essv10990,essv19947,essv24601,essv11417,essv8388,essv23891,essv4651,essv9161,essv21207,essv17111,essv21129,essv15366,essv18141,essv9793,essv7725,essv6295,essv21395,essv24969,essv10874,essv19192,essv3790,essv16765,essv15708,essv5732,essv6942,essv477,essv17049,essv9733,essv9060,essv12735,essv20337,essv7299,essv4806,essv2231,essv1630,essv17015,essv13031,essv4164,essv22368,essv22749,essv1425,essv21341,essv3348,essv17423,essv19662,essv5214,essv20655,essv6695,essv3190,essv4496,essv13556,essv21413,essv16253,essv15592,essv9259,essv2011,essv1206,essv18996,essv2843,essv17335,essv787,essv16031,essv7840,essv1935,essv23573,essv11911,essv1117,essv17639,essv3522,essv17240,essv17954,essv19770,essv20113,essv23417,essv15466,essv22234,essv12467,essv4020,essv21808,essv23522 M 271 0 0 "" NA06991,NA06993,NA06994,NA07019,NA07022,NA07029,NA07034,NA07048,NA07056,NA07345,NA07348,NA07357,NA10831,NA10835,NA10839,NA10854,NA10855,NA10856,NA10859,NA10860,NA10863,NA11829,NA11830,NA11831,NA11839,NA11840,NA11881,NA11882,NA11992,NA11993,NA12003,NA12005,NA12006,NA12043,NA12044,NA12057,NA12146,NA12154,NA12155,NA12234,NA12236,NA12249,NA12264,NA12707,NA12716,NA12717,NA12740,NA12750,NA12751,NA12752,NA12753,NA12760,NA12762,NA12763,NA12802,NA12812,NA12813,NA12814,NA12815,NA12865,NA12873,NA12875,NA12878,NA12892,NA18500,NA18501,NA18502,NA18503,NA18505,NA18506,NA18507,NA18508,NA18515,NA18516,NA18517,NA18521,NA18522,NA18523,NA18524,NA18529,NA18537,NA18540,NA18542,NA18545,NA18550,NA18552,NA18555,NA18558,NA18563,NA18564,NA18572,NA18573,NA18582,NA18592,NA18593,NA18594,NA18603,NA18608,NA18609,NA18611,NA18620,NA18621,NA18622,NA18624,NA18633,NA18636,NA18852,NA18853,NA18854,NA18855,NA18856,NA18857,NA18858,NA18859,NA18860,NA18862,NA18863,NA18870,NA18871,NA18872,NA18912,NA18913,NA18914,NA18942,NA18943,NA18944,NA18945,NA18948,NA18949,NA18951,NA18952,NA18953,NA18956,NA18959,NA18960,NA18964,NA18965,NA18966,NA18968,NA18969,NA18970,NA18971,NA18972,NA18974,NA18975,NA18976,NA18978,NA18980,NA18981,NA18987,NA18992,NA18995,NA18998,NA18999,NA19000,NA19007,NA19092,NA19093,NA19094,NA19098,NA19099,NA19100,NA19101,NA19102,NA19103,NA19116,NA19119,NA19120,NA19127,NA19128,NA19129,NA19130,NA19131,NA19132,NA19137,NA19138,NA19141,NA19143,NA19144,NA19145,NA19153,NA19154,NA19159,NA19160,NA19161,NA19171,NA19172,NA19192,NA19194,NA19200,NA19201,NA19202,NA19203,NA19204,NA19205,NA19206,NA19207,NA19208,NA19210,NA19211,NA19222,NA19223,NA19238,NA19240 essv1724 8 86592730 87124169 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18997 nsv525974 8 86594772 86603211 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702192 S 2026 0 1 "" nsv831378 8 86620595 86756907 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447299,nssv1447298,nssv1447292,nssv1447297,nssv1447294,nssv1447293 M 95 3 3 "" nsv517627 8 86657440 86735603 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv683391,nssv695212,nssv677367,nssv652588,nssv687855,nssv664422 M 2026 1 5 "" esv32802 8 86682938 86688867 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97120 S 51 0 1 "" 22075 nsv8362 8 86726002 86911567 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21480,nssv17718,nssv16907,nssv18871,nssv16249,nssv17643,nssv20474,nssv19813,nssv16734,nssv19827,nssv16492,nssv20273,nssv18219,nssv17998,nssv17120,nssv17102,nssv17647,nssv17766,nssv19242,nssv17305,nssv17284,nssv18458,nssv16676,nssv19851,nssv17446,nssv17355 M 31 26 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10863,NA11830,NA12155,NA12740,NA18502,NA18504,NA18517,NA18537,NA18552,NA18563,NA18564,NA18572,NA18853,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19144,NA19221,NA19240 nsv442112 8 86726773 86744665 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv471542 8 86739822 86761576 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv547958,nssv547957,nssv547955 M 3 "" nsv6284 8 86740331 86760428 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv744,nssv9754,nssv3666,nssv10627,nssv3664,nssv11189,nssv10629,nssv6233,nssv11188,nssv5108 M 9 7 0 "" NA12156,NA12878,NA15510,NA18507,NA18956,NA19129,NA19240 dgv2244e1 8 86743869 86955528 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv22309,essv10953,essv1028,essv11776,essv2531,essv23210,essv22165,essv3156,essv16399,essv14201,essv20437,essv16650,essv10208,essv11894,essv20929,essv19492,essv8610,essv2662 M 271 0 0 "" NA06985,NA10830,NA10857,NA12156,NA12801,NA12864,NA18504,NA18967,NA19003,NA19005,NA19012,NA19139,NA19140,NA19142,NA19152,NA19209,NA19221,NA19239 nsv29 8 86744550 86746013 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv29 S 1 1 0 "" NA15510 nsv7418 8 86745690 86909323 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3674,nssv743,nssv3668,nssv3671,nssv11193,nssv9756,nssv6236,nssv11190,nssv9755,nssv5111,nssv1757,nssv10628,nssv6242,nssv5109,nssv746,nssv3665,nssv10632,nssv6240,nssv6235,nssv10631,nssv9465,nssv6234,nssv742,nssv5110,nssv1761,nssv3670,nssv1756,nssv1759,nssv748 M 9 0 0 "" NA12156,NA12878,NA15510,NA18507,NA18517,NA18555,NA18956,NA19129,NA19240 nsv30 8 86749175 86752060 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv30 S 1 1 0 "" NA15510 nsv482122 8 86755947 86762978 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558483 S 1 1 0 "" KB1 nsv831379 8 86851015 86910934 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447303,nssv1447301,nssv1447304,nssv1447316,nssv1447305,nssv1447309,nssv1447315,nssv1447308,nssv1447306,nssv1447310,nssv1447314,nssv1447311,nssv1447312,nssv1447320,nssv1447319,nssv1447317,nssv1447321,nssv1447322,nssv1447302,nssv1447313,nssv1447300 M 95 12 9 "" nsv31 8 86860428 86892874 OTHER Inversion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv31 S 1 0 0 "" NA15510 nsv6285 8 86860499 86935353 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv11192,nssv3669,nssv10633,nssv749 M 9 0 4 "" NA12878,NA15510,NA18956,NA19240 nsv6286 8 86862557 86872446 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5112,nssv10630,nssv1758,nssv745,nssv6237,nssv11191 M 9 6 0 "" NA12156,NA15510,NA18555,NA18956,NA19129,NA19240 nsv831380 8 86862766 86899546 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447344,nssv1447342,nssv1447345,nssv1447343,nssv1447346,nssv1447339,nssv1447326,nssv1447325,nssv1447341,nssv1447324,nssv1447323,nssv1447330,nssv1447328,nssv1447327,nssv1447337,nssv1447331,nssv1447336,nssv1447338,nssv1447332,nssv1447333,nssv1447334,nssv1447335 M 95 7 15 "" nsv32 8 86867463 86871701 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv32 S 1 1 0 "" NA15510 nsv33 8 86871247 86932655 CNV Loss Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv33 S 1 0 1 "" NA15510 nsv831382 8 86873807 86898973 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447364,nssv1447350,nssv1447363,nssv1447370,nssv1447365,nssv1447360,nssv1447356,nssv1447369,nssv1447368,nssv1447349,nssv1447366,nssv1447347,nssv1447348,nssv1447352,nssv1447359,nssv1447371,nssv1447355,nssv1447354,nssv1447353,nssv1447367,nssv1447358,nssv1447357,nssv1447361 M 95 8 15 "" nsv469603 8 86874898 87026027 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649719 M 265 14 8 Samples from several populations that are part of the HapMap project. "" nsv6288 8 86880243 86883571 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3672,nssv6238 M 9 2 0 "" NA12156,NA12878 nsv34 8 86882411 86894984 OTHER Inversion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv34 S 1 0 0 "" NA15510 nsv6289 8 86883811 86922101 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3675,nssv1760,nssv750,nssv11195,nssv6243,nssv6244,nssv10634,nssv11194,nssv3673,nssv6239 M 9 6 0 "" NA12156,NA12878,NA15510,NA18555,NA18956,NA19240 nsv36 8 86884371 86889095 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv36 S 1 1 0 "" NA15510 nsv37 8 86896630 86899755 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv37 S 1 1 0 "" NA15510 dgv464n21 8 86910517 86918425 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv524454,nsv522895 M 2026 0 2 "" nsv522252 8 86918262 86918425 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695032 S 2026 0 1 "" nsv8363 8 87020363 87024932 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21510,nssv19843 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18504,NA19221 nsv520085 8 87103350 87110990 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697216 S 2026 0 1 "" nsv6290 8 87244856 87298924 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5114,nssv3676 M 9 0 2 "" NA12878,NA19129 nsv465733 8 87256166 87371444 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541483 S 1557 1 0 "" NINDS_9 nsv519507 8 87256311 87403084 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv679671,nssv656452,nssv678919,nssv695925 M 2026 3 1 "" nsv397543 8 87443325 87443325 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416121 M 24 "" esv2422239 8 87616509 88896042 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161487 S 181 1 0 "" ND01354 nsv818641 8 87712857 87727855 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416462 S 112 0 1 "" NA18517 nsv465734 8 87783091 88970925 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541484 S 1557 1 0 "" NINDS_45 nsv398104 8 87884125 87884196 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416682 M 24 "" nsv831383 8 87896390 88074013 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447372 S 95 1 0 "" nsv519200 8 87938792 87942336 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694315 S 2026 0 1 "" nsv398035 8 88180094 88180378 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416613 M 24 "" nsv525991 8 88454193 88485434 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702214 S 2026 0 1 "" nsv437627 8 88580849 88585533 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467508 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19132 nsv831384 8 88815834 88986364 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447376,nssv1447375,nssv1447374,nssv1447377 M 95 4 0 "" nsv527669 8 88832035 88855893 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704144 S 2026 0 1 "" nsv6291 8 88836263 88872072 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8521 S 9 0 1 "" NA12156 nsv831385 8 88876378 89034588 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447378 S 95 0 1 "" nsv6292 8 88989851 89034488 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8522 S 9 0 1 "" NA12156 essv19267 8 89032945 89202820 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA10838 nsv396473 8 89265936 89266091 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415051 M 24 "" nsv831386 8 89278904 89472662 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447379 S 95 1 0 "" nsv527243 8 89286657 89297086 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703645 S 2026 0 1 "" nsv397331 8 89461324 89461630 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415909 M 24 "" nsv520279 8 89603207 89676553 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv662350,nssv688733 M 2026 0 2 "" nsv831387 8 89873310 90080226 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447380 S 95 0 1 "" esv2752269 8 89956774 90043500 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6983032,essv6983031,essv6983033,essv6986329,essv6986330 M 771 1 0 "" BEC_535 nsv831388 8 89961838 90120053 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447382,nssv1447381 M 95 0 2 "" nsv442113 8 89997494 89999111 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv519294 8 90007341 90010330 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696773 S 2026 0 1 "" nsv526069 8 90067358 90075430 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702309 S 2026 0 1 "" essv1813 8 90162190 90164239 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18971 nsv397759 8 90173959 90180065 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416337 M 24 "" nsv526917 8 90235545 90271053 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703279 S 2026 0 1 "" nsv821658 8 90268651 90314197 CNV Gain Sebat_et_al_2004 15273396 ROMA Custom Nimblegen photoprint 85000 probe ROMA oligo array nssv1421214 S 31 1 0 "" essv8888 8 90390763 90407394 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19171 nsv8364 8 90398809 90407280 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18299 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19173 nsv818642 8 90399318 90406126 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416575,nssv1416576 M 112 0 2 "" NA19171,NA19173 nsv438068 8 90399970 90406126 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470012,nssv470013,nssv470014,nssv470011 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA19171,NA19173 essv12134 8 90400200 90407394 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19173 nsv522956 8 90400478 90402277 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698625 S 2026 0 1 "" nsv437628 8 90400506 90408458 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467509 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19173 nsv6293 8 90435039 90467063 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5115 S 9 1 0 "" NA19129 nsv510156 8 90534530 90540530 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622167,nssv624069 M 4 0 2 "" NA10860,NA18994 nsv396094 8 90537377 90537538 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv414672 M 24 "" nsv528988 8 90544491 90677362 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705688 S 2026 0 1 "" nsv525380 8 90602043 90616095 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701502 S 2026 1 0 "" nsv527244 8 90602043 90658746 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703646 S 2026 1 0 "" nsv831389 8 90644633 90822242 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447383 S 95 0 1 "" nsv524399 8 90696552 90704907 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700317 S 2026 0 1 "" nsv6294 8 90774902 90819223 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1762 S 9 0 1 "" NA18555 nsv6295 8 90889316 90922713 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8523 S 9 1 0 "" NA12156 nsv520356 8 90892832 90927156 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv684002,nssv663164 M 2026 0 2 "" nsv6296 8 90963008 90997735 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv751 S 9 1 0 "" NA19240 essv345 8 91069962 91398845 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18971 nsv8365 8 91083536 91088776 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20303 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18972 essv1701 8 91159997 91248302 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18968 esv34347 8 91170515 91248302 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6980207,essv6980208 M 771 1 0 "" NA18968 essv1798 8 91196856 91304511 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18971 esv35109 8 91219902 91296116 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6978141,essv6987334,essv6978142 M 771 0 1 "" NA18971 nsv818643 8 91222484 91281324 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417540 S 112 0 1 "" NA18971 nsv438069 8 91252950 91255894 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470015 S 269 0 1 Samples from several populations that are part of the HapMap project. "" NA18971 nsv8366 8 91259228 91264514 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16279 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18572 nsv510157 8 91275479 91281479 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618295,nssv621339 M 4 0 2 "" CHM,NA15510 nsv510158 8 91360814 91366814 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621340 S 4 0 1 "" NA15510 nsv6297 8 91483713 91503743 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10635 S 9 1 0 "" NA18956 essv220 8 92043675 92342900 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18948 nsv831390 8 92106187 92267781 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447385 S 95 1 0 "" nsv6300 8 92109758 92144758 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv752 S 9 1 0 "" NA19240 nsv465736 8 92192384 92243291 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541485 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01057 nsv525292 8 92192384 92243291 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701398 S 2026 0 1 "" essv3326 8 92196639 92253014 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18948 esv35058 8 92196639 92287952 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6988307,essv6980074 M 771 0 1 "" NA18948 nsv6301 8 92254321 92286429 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10636 S 9 1 0 "" NA18956 nsv398405 8 92255441 92255441 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416983 M 24 "" nsv524992 8 92256914 92258116 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701021 S 2026 0 1 "" nsv6302 8 92336232 92350693 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8524 S 9 0 1 "" NA12156 nsv523642 8 92461046 92612139 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699443 S 2026 1 0 "" nsv6303 8 92546676 92591595 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8525 S 9 0 1 "" NA12156 nsv831391 8 92647432 92830267 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447386 S 95 0 1 "" nsv831393 8 92732973 92896230 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447387 S 95 1 0 "" nsv465737 8 92756892 92939935 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541486 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01186 nsv398262 8 92915880 92915880 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416840 M 24 "" nsv831394 8 93331212 93555276 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447388 S 95 0 1 "" nsv6304 8 93424369 93458234 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2795 S 9 1 0 "" NA18555 essv23808 8 93612869 93782102 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12763 nsv831395 8 93630969 93815239 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447389 S 95 1 0 "" nsv396166 8 93652672 93652722 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv414744 M 24 "" nsv8367 8 93705785 93707383 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17314 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA10839 nsv520319 8 93729883 93750484 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697346 S 2026 1 0 "" nsv524263 8 93733795 93741652 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700160 S 2026 0 1 "" nsv438071 8 93767166 93775734 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470017,nssv470018,nssv470020,nssv470016 M 269 0 4 Samples from several populations that are part of the HapMap project. "" NA07056,NA10860,NA12878,NA12892 nsv520321 8 93975352 93986958 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697347 S 2026 1 0 "" nsv516524 8 94115488 94115766 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv680760,nssv670623,nssv685110,nssv688457,nssv668870,nssv685325 M 2026 6 0 "" nsv517836 8 94115488 94146747 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695241 S 2026 1 0 "" nsv6305 8 94126057 94157293 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3678,nssv8526 M 9 0 2 "" NA12156,NA12878 nsv831396 8 94127529 94331876 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447390 S 95 1 0 "" nsv508519 8 94140348 94160880 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617363 S 4 0 1 "" CHM nsv465738 8 94212383 94236830 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541487 S 1557 0 1 "" 1780854017_A nsv6306 8 94299224 94315571 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv753 S 9 0 1 "" NA19240 nsv6307 8 94407727 94450765 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8527 S 9 0 1 "" NA12156 nsv510159 8 94418977 94424977 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624070 S 4 0 1 "" NA18994 nsv831397 8 94424364 94588607 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447392,nssv1447393,nssv1447391 M 95 3 0 "" nsv831398 8 94574109 94712488 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447394 S 95 1 0 "" nsv6308 8 94719693 94754554 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv754 S 9 1 0 "" NA19240 nsv528872 8 94759374 94813989 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705552 S 2026 0 1 "" nsv831399 8 94784579 94974041 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447396 S 95 0 1 "" nsv6309 8 94810961 94845178 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv755 S 9 1 0 "" NA19240 nsv831400 8 94937953 94974041 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447397 S 95 1 0 "" nsv518975 8 95054898 95062134 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696443 S 2026 0 1 "" nsv6311 8 95241315 95274197 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv756 S 9 1 0 "" NA19240 dgv465n21 8 95265970 95302512 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv518636,nsv522024 M 2026 2 0 "" nsv831401 8 95287473 95463144 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447398 S 95 0 1 "" nsv396169 8 95291659 95292424 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv414747 M 24 "" nsv6312 8 95393627 95408381 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5116 S 9 1 0 "" NA19129 nsv398390 8 95422398 95422452 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416968 M 24 "" nsv6313 8 95493461 95527047 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5117 S 9 1 0 "" NA19129 nsv438072 8 95627870 95640619 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470021 S 269 0 1 Samples from several populations that are part of the HapMap project. "" NA19116 nsv520435 8 95667774 95677543 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697417 S 2026 0 1 "" nsv516679 8 95686156 95707672 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694141,nssv670111,nssv682581 M 2026 2 1 "" nsv6314 8 95941110 95975296 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8528 S 9 1 0 "" NA12156 nsv508520 8 96008549 96209244 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622600,nssv622599,nssv618838 M 4 0 2 "" NA10860,NA18994 nsv818645 8 96037014 96043549 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416463 S 112 0 1 "" NA18516 nsv524876 8 96070095 96096482 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700881 S 2026 1 0 "" nsv397508 8 96242553 96242937 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416086 M 24 "" nsv523655 8 96275096 96308289 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699456 S 2026 0 1 "" nsv516035 8 96277902 96304627 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704862,nssv693651,nssv665851 M 2026 1 2 "" nsv6315 8 96285641 96330847 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8529 S 9 0 1 "" NA12156 nsv465741 8 96290298 96317011 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541489 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00757 nsv525440 8 96323522 96345468 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701568 S 2026 0 1 "" dgv249n6 8 96414432 96414569 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv396098,nsv396880,nsv397075 M 24 "" nsv465742 8 96513778 96525248 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541490 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01297 nsv522163 8 96516902 96524629 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694936 S 2026 0 1 "" esv2752270 8 96519623 96528370 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6984155,essv6984156,essv6989919 M 771 0 1 "" BEC_789 nsv6316 8 96522794 96557131 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv758 S 9 1 0 "" NA19240 nsv398341 8 96534687 96543089 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416919 M 24 "" nsv465743 8 96541599 96587380 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541491 S 1557 0 1 "" 1782681195_A nsv465744 8 96652727 96665530 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541492 S 1557 0 1 "" 1780862001_A nsv397435 8 96875030 96884242 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416013 M 24 "" essv14665 8 96892887 96916149 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19145 nsv522677 8 96915454 96924940 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv706084 S 2026 0 1 "" nsv525944 8 96922591 96932613 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702150 S 2026 0 1 "" nsv437629 8 96923538 96927197 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467510 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18872 nsv442114 8 96923541 96926233 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv516316 8 96923821 96924940 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv679289,nssv661506,nssv655745,nssv690361,nssv689780,nssv656154,nssv667538 M 2026 0 7 "" nsv6317 8 96929575 96987460 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5118,nssv759 M 9 0 2 "" NA19129,NA19240 nsv831402 8 96955451 97126165 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447400,nssv1447399 M 95 1 1 "" nsv397239 8 97167265 97167616 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415817 M 24 "" nsv6318 8 97300405 97327177 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3679 S 9 1 0 "" NA12878 nsv6319 8 97352965 97385069 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5119 S 9 1 0 "" NA19129 nsv6320 8 97412550 97437829 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2796 S 9 1 0 "" NA18555 nsv526171 8 97431010 97565172 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702432 S 2026 1 0 "" nsv831404 8 97495439 97666911 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447401 S 95 1 0 "" nsv515603 8 97531391 97532234 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv668933,nssv656486,nssv664056 M 2026 0 3 "" nsv519431 8 97546132 97588101 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696850 S 2026 1 0 "" nsv396800 8 97654742 97654742 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415378 M 24 "" nsv6322 8 97671325 97715742 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4614 S 9 0 1 "" NA19129 nsv507475 8 97679001 97685001 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617773 S 4 1 0 "" CHM nsv6323 8 97718550 97751233 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6245 S 9 1 0 "" NA12156 esv33454 8 97720501 97720650 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv95734 S 51 0 1 "" 21841 esv33311 8 97720501 97724641 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100893 S 51 0 1 "" 21656 nsv510160 8 97920717 97926717 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618296,nssv621341 M 4 0 2 "" CHM,NA15510 nsv6324 8 97977108 98006557 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1763 S 9 1 0 "" NA18555 nsv522477 8 98263065 98279184 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705843 S 2026 0 1 "" nsv520129 8 98316100 98320814 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697239 S 2026 0 1 "" nsv510161 8 98381173 98387173 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624071 S 4 0 1 "" NA18994 nsv521434 8 98426558 98427422 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698045 S 2026 0 1 "" nsv522488 8 98426558 98429188 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705855 S 2026 0 1 "" nsv523469 8 98469164 98469831 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699228 S 2026 0 1 "" esv2752271 8 98618400 98809595 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6986331,essv6988617,essv6983035,essv6983034 M 771 1 0 "" BEC_535 nsv397972 8 98664586 98664924 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416550 M 24 "" nsv397699 8 98668752 98668752 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416277 M 24 "" nsv6325 8 98700480 98745218 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8531 S 9 0 1 "" NA12156 nsv526913 8 98810881 98857662 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703274 S 2026 0 1 "" nsv526544 8 98812839 98833969 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702858 S 2026 0 1 "" nsv517493 8 98833969 98857662 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv674186,nssv681846,nssv674109,nssv688803,nssv687421,nssv688080,nssv668606,nssv657014,nssv683356,nssv652187,nssv667539,nssv682504 M 2026 0 12 "" nsv396425 8 98852625 98852956 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415003 M 24 "" nsv528695 8 99029989 99091185 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705340 S 2026 1 0 "" nsv465745 8 99131168 99185377 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541493 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01047 nsv507476 8 99138582 99144582 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620424 S 4 1 0 "" NA15510 nsv398164 8 99154833 99154882 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416742 M 24 "" dgv250n6 8 99154839 99154924 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv396193,nsv396218,nsv396152 M 24 "" nsv465746 8 99157427 99186708 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541494 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01053 nsv831405 8 99164415 99330110 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447402 S 95 1 0 "" nsv465747 8 99174902 99208786 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541495 S 1557 1 0 "" 1782681495_A nsv524078 8 99178976 99179299 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699947 S 2026 0 1 "" nsv6326 8 99290850 99332863 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8532 S 9 0 1 "" NA12156 nsv397166 8 99325671 99325750 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415744 M 24 "" nsv831406 8 99359921 99551252 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447403 S 95 0 1 "" nsv515633 8 99443835 99448435 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv680137,nssv664178 M 2026 0 2 "" nsv507477 8 99875593 99881593 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617774,nssv620425,nssv621921,nssv623050 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv6327 8 99988810 100033739 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5120 S 9 0 1 "" NA19129 dgv2245e1 8 100098024 100265857 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv872,essv21732,essv16993,essv11718,essv4857,essv5338,essv10358,essv9929,essv8248 M 271 0 0 "" NA12248,NA18506,NA18540,NA18563,NA19000,NA19116,NA19144,NA19145,NA19154 nsv524617 8 100102020 100787101 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700578 S 2026 0 1 "" nsv821659 8 100216817 100439005 CNV Loss Sebat_et_al_2004 15273396 ROMA Custom Nimblegen photoprint 85000 probe ROMA oligo array nssv1421215 S 31 0 1 "" nsv6328 8 100232706 100264916 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6246 S 9 1 0 "" NA12156 nsv831407 8 100353582 100517901 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447404 S 95 0 1 "" dgv2246e1 8 100473327 100604045 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv16652,essv10993,essv12369,essv23819,essv19208,essv24807,essv17942,essv10287 M 271 0 0 "" NA10838,NA10860,NA12003,NA12763,NA18506,NA19138,NA19142,NA19143 dgv2247e1 8 100473327 100731377 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv6365,essv4772,essv11680,essv20376,essv7113,essv4385,essv4081,essv23367 M 271 0 0 "" NA10830,NA12750,NA18537,NA18573,NA18609,NA18620,NA18635,NA19154 essv20276 8 100473327 100907800 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12144 nsv831408 8 100592699 100790683 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447405 S 95 0 1 "" nsv396580 8 100705413 100713139 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415158 M 24 "" nsv8368 8 100705541 100709656 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16706 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19007 nsv523290 8 100777771 100787101 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699030 S 2026 0 1 "" nsv396852 8 100931314 100931381 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415430 M 24 "" nsv396616 8 101180250 101180310 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415194 M 24 "" nsv6329 8 101255861 101300564 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8533 S 9 0 1 "" NA12156 nsv509275 8 101480286 101557910 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620912,nssv623544 M 4 2 0 "" NA15510,NA18994 nsv527071 8 101654425 101665082 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703450 S 2026 0 1 "" nsv438073 8 101727812 101728344 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470022 S 269 0 1 Samples from several populations that are part of the HapMap project. "" NA06985 esv2752193 8 101882000 101984143 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6985408,essv6980781,essv6980782 M 771 1 0 "" BEC_149 nsv396135 8 101959697 101959764 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv414713 M 24 "" nsv831409 8 102005665 102162609 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447408 S 95 0 1 "" nsv508521 8 102028687 102069935 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617364 S 4 0 1 "" CHM nsv396890 8 102044507 102045209 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415468 M 24 "" nsv442115 8 102057367 102061693 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv519968 8 102057402 102063590 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv689297,nssv679208,nssv659727 M 2026 0 3 "" nsv523235 8 102083768 102110206 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698959 S 2026 0 1 "" nsv524119 8 102087563 102156725 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699997 S 2026 1 0 "" nsv465748 8 102178213 102200916 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541496 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00772 nsv6330 8 102211034 102244557 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3680 S 9 1 0 "" NA12878 nsv831410 8 102246501 102392370 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447409 S 95 1 0 "" nsv6331 8 102329783 102359585 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1764 S 9 1 0 "" NA18555 nsv6333 8 102462104 102492830 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5121 S 9 1 0 "" NA19129 essv7888 8 102462222 102471681 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19140 nsv520170 8 102463356 102467091 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv680062,nssv661339 M 2026 0 2 "" nsv519060 8 102516263 102516747 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696531 S 2026 0 1 "" nsv521805 8 102535237 102536556 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694575 S 2026 0 1 "" nsv396225 8 102590562 102590562 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv414803 M 24 "" nsv396957 8 102667495 102673504 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415535 M 24 "" dgv2248e1 8 102678650 102718857 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv9306,essv14849 M 271 0 0 "" NA18852,NA19119 nsv8370 8 102689349 102696042 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18028,nssv18901 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA19144,NA19240 nsv442525 8 102689782 102694888 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" essv9539 8 102689866 102693736 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18861 dgv466n21 8 102910207 102962802 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv523850,nsv518162 M 2026 0 2 "" nsv465749 8 102916378 102998636 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541497 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00625 nsv507478 8 102936757 102942757 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623051,nssv621922,nssv620426 M 4 3 0 "" NA10860,NA15510,NA18994 nsv831411 8 103007167 103177316 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447410 S 95 1 0 "" nsv8371 8 103122170 103126455 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19881 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18860 nsv438074 8 103123275 103124395 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470025,nssv470027,nssv470026,nssv470023,nssv470024 M 269 0 5 Samples from several populations that are part of the HapMap project. "" NA18522,NA18858,NA18860,NA19138,NA19139 nsv517149 8 103123275 103125693 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv653872,nssv685501,nssv681629,nssv682074,nssv678653,nssv659209,nssv664860,nssv660548,nssv688273,nssv658907,nssv655515,nssv675341,nssv683250,nssv671098,nssv690356,nssv683718,nssv682502,nssv662033,nssv686119,nssv665506,nssv658519,nssv661210,nssv661033,nssv659728,nssv666804,nssv664461,nssv653396,nssv653347 M 2026 0 28 "" nsv818646 8 103123275 103125693 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416946,nssv1416947 M 112 0 2 "" NA19138,NA19139 nsv517893 8 103191165 103192213 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695301 S 2026 0 1 "" nsv523654 8 103191165 103193388 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699455 S 2026 1 0 "" nsv6334 8 103235263 103270465 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv760 S 9 1 0 "" NA19240 nsv528486 8 103349098 103442480 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705090 S 2026 0 1 "" nsv6335 8 103391032 103422906 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6247 S 9 1 0 "" NA12156 nsv831412 8 103406372 103605573 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447411 S 95 1 0 "" esv33118 8 103427743 104137348 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98614 S 51 0 1 "" 22085 nsv523096 8 103560090 103567964 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698788 S 2026 0 1 "" nsv520922 8 103847985 103849762 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697690 S 2026 0 1 "" nsv519814 8 103847985 103876090 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697065 S 2026 0 1 "" nsv525735 8 103874273 103876090 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701900 S 2026 0 1 "" nsv465752 8 104023166 104048890 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541499 S 1557 0 1 "" 1780862484_A nsv831413 8 104154317 104338965 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447412,nssv1447413 M 95 2 0 "" nsv521033 8 104162535 104179751 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697745 S 2026 0 1 "" nsv437077 8 104201341 104202402 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv466958 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA10863 nsv527031 8 104390104 104403014 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703406 S 2026 0 1 "" nsv523544 8 104394510 104395399 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699322 S 2026 0 1 "" nsv397277 8 104437571 104443460 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415855 M 24 "" nsv396392 8 104452076 104452395 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv414970 M 24 "" nsv831415 8 104976933 105184496 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447414 S 95 0 1 "" nsv465753 8 105025881 105205725 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541500 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00580 esv32618 8 105146754 105148665 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99775 S 51 0 1 "" 22086 nsv6336 8 105169495 105195167 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8534 S 9 1 0 "" NA12156 nsv831416 8 105206965 105366141 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447415 S 95 1 0 "" nsv397279 8 105336597 105336697 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415857 M 24 "" nsv507479 8 105366786 105372786 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620427,nssv623052,nssv621923 M 4 3 0 "" NA10860,NA15510,NA18994 nsv6337 8 105496233 105526197 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2797 S 9 1 0 "" NA18555 nsv831417 8 105524990 105694784 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447416 S 95 0 1 "" nsv508522 8 105601210 105683579 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618839 S 4 0 1 "" NA10860 esv2422460 8 105642552 105815505 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161383 S 181 1 0 "" ND04017 nsv398062 8 105722993 105723058 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416640 M 24 "" nsv465754 8 105833704 105948008 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541501 S 1557 1 0 "" NINDS_171 nsv528963 8 105896394 105910413 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705659 S 2026 0 1 "" nsv517607 8 105901403 105910413 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv691299,nssv654141 M 2026 0 2 "" nsv6338 8 105918000 105962918 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8535 S 9 0 1 "" NA12156 nsv510162 8 106018554 106024554 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621342 S 4 0 1 "" NA15510 nsv522524 8 106051022 106051129 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705894 S 2026 0 1 "" nsv465755 8 106177173 106190921 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541502 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01187 nsv523932 8 106293050 106303818 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699777 S 2026 0 1 "" nsv525494 8 106365896 106373584 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701626 S 2026 0 1 "" nsv521187 8 106392912 106434027 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697834 S 2026 0 1 "" nsv510163 8 106518814 106524814 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618297 S 4 0 1 "" CHM nsv525601 8 106579694 106580866 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701745 S 2026 1 0 "" nsv395924 8 106640883 106641592 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv414502 M 24 "" nsv831418 8 106717632 106902509 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447417 S 95 1 0 "" nsv396362 8 106739695 106740014 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv414940 M 24 "" nsv510164 8 106749739 106755739 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621343 S 4 0 1 "" NA15510 nsv6339 8 106857794 106891227 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv761 S 9 1 0 "" NA19240 nsv6340 8 106983757 107018449 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv762 S 9 1 0 "" NA19240 nsv515580 8 106995171 107025603 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv667926,nssv663962 M 2026 0 2 "" nsv396682 8 107090756 107090808 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415260 M 24 "" nsv526103 8 107117271 107118001 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702351 S 2026 0 1 "" nsv437078 8 107155595 107161387 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv466959 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA12865 nsv438075 8 107157602 107159676 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470028,nssv470029 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA12865,NA12875 nsv516086 8 107158155 107159676 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv661812,nssv677993,nssv680806,nssv654554,nssv662502,nssv666114,nssv685783,nssv655074,nssv689471,nssv671534,nssv655577,nssv667535,nssv691761,nssv685449,nssv669365,nssv670083,nssv693649 M 2026 0 17 "" nsv818647 8 107158155 107159676 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415769,nssv1415768 M 112 0 2 "" NA12865,NA12875 nsv6341 8 107236371 107270550 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv763 S 9 1 0 "" NA19240 nsv397163 8 107290880 107299238 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415741 M 24 "" nsv397388 8 107502164 107511432 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415966 M 24 "" dgv467n21 8 107571607 107575479 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv522141,nsv523056 M 2026 0 2 "" nsv396328 8 107580270 107580594 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv414906 M 24 "" nsv396739 8 107601601 107601674 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415317 M 24 "" nsv396629 8 107601676 107601749 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415207 M 24 "" nsv831419 8 107693885 107896977 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447420,nssv1447419 M 95 0 2 "" esv33830 8 107707708 107708178 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv95993 S 51 0 1 "" 22127 nsv6342 8 107713268 107758074 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8536 S 9 0 1 "" NA12156 nsv397838 8 107797747 107798076 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416416 M 24 "" dgv468n21 8 107886832 107892324 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv516791,nsv523126 M 2026 0 8 "" nsv465756 8 107908068 107941753 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541503 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00515 nsv517618 8 107926391 107931173 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv679209,nssv654152,nssv656343,nssv652151,nssv684916,nssv686212,nssv689929,nssv686965,nssv664715,nssv659729,nssv653805,nssv660000,nssv689408,nssv670519,nssv653755,nssv690747,nssv657627,nssv653049,nssv693247,nssv686234,nssv672093,nssv657371,nssv656579,nssv691405,nssv655320,nssv688944,nssv665463,nssv669874,nssv660393,nssv660282,nssv674918,nssv679685,nssv672338,nssv673695,nssv691132,nssv655159,nssv678876,nssv654418,nssv670130,nssv661456,nssv659475,nssv667927,nssv668029,nssv652567,nssv666226,nssv669393,nssv671314,nssv671559,nssv664662,nssv660744,nssv684659,nssv693119 M 2026 0 52 "" nsv437630 8 107926391 107935025 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467511 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19205 nsv442116 8 107927695 107931446 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv465758 8 107929316 107931173 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541504 S 1557 0 1 "" 1782681378_A nsv818648 8 107929316 107931173 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416760,nssv1416759 M 112 0 2 "" NA19159,NA19161 nsv438076 8 107930039 107931173 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470031,nssv470032 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA19203,NA19205 nsv507480 8 108011786 108017786 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620428 S 4 1 0 "" NA15510 nsv516674 8 108013847 108024735 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv670868,nssv689159,nssv653342,nssv672833,nssv669044,nssv684685 M 2026 0 6 "" nsv465759 8 108018022 108062827 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541505 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00701 nsv397473 8 108189411 108189733 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416051 M 24 "" nsv397529 8 108442915 108443004 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416107 M 24 "" nsv396372 8 108442987 108443076 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv414950 M 24 "" nsv524618 8 108525981 108527758 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700579 S 2026 0 1 "" nsv396231 8 108573995 108575539 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv414809 M 24 "" nsv516660 8 108729679 108773687 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv672197,nssv669945 M 2026 0 2 "" nsv6344 8 108737369 108767586 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10637 S 9 1 0 "" NA18956 dgv469n21 8 108834967 108837523 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv525051,nsv525390 M 2026 0 2 "" nsv528821 8 109084974 109089576 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705495 S 2026 0 1 "" nsv6345 8 109168509 109186351 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6248 S 9 0 1 "" NA12156 nsv396747 8 109217151 109217151 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415325 M 24 "" nsv510165 8 109544712 109550712 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621344,nssv622168 M 4 0 2 "" NA10860,NA15510 nsv831420 8 109781628 109985482 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447421,nssv1447422 M 95 2 0 "" nsv397356 8 109799338 109799662 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415934 M 24 "" nsv398270 8 109846831 109851355 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416848 M 24 "" nsv525052 8 109970833 109972734 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701097 S 2026 0 1 "" nsv397402 8 110146539 110146539 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415980 M 24 "" nsv515589 8 110337280 110369755 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv680099,nssv664016,nssv669986,nssv665886,nssv690468 M 2026 0 5 "" nsv6346 8 110378286 110413580 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9467,nssv3681 M 9 2 0 "" NA12878,NA18517 nsv396947 8 110579484 110579805 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415525 M 24 "" nsv528208 8 110653350 110654464 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704769 S 2026 0 1 "" nsv519645 8 110671493 110682176 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv657959,nssv663200,nssv657328,nssv673425 M 2026 0 4 "" nsv396337 8 110761864 110761864 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv414915 M 24 "" nsv398033 8 110761933 110761933 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416611 M 24 "" nsv831421 8 110943810 111107471 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447423 S 95 1 0 "" nsv6347 8 111047319 111092366 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8538 S 9 0 1 "" NA12156 nsv525742 8 111182883 111192080 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701908 S 2026 0 1 "" dgv470n21 8 111182883 111213795 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv526118,nsv522041 M 2026 0 2 "" nsv465762 8 111207860 111250561 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541507 S 1557 0 1 "" 1782681262_A nsv527414 8 111288033 111531312 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703852 S 2026 0 1 "" nsv510166 8 111319622 111325622 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621345 S 4 0 1 "" NA15510 nsv396544 8 111449402 111450862 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415122 M 24 "" nsv831422 8 111648125 111824346 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447424,nssv1447426,nssv1447425 M 95 1 2 "" nsv831423 8 111741977 111938994 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447427 S 95 0 1 "" nsv521944 8 111778978 111782334 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694713 S 2026 0 1 "" nsv442117 8 112057232 112059278 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv507481 8 112156646 112162646 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621924,nssv620429,nssv617775 M 4 3 0 "" CHM,NA10860,NA15510 nsv6348 8 112220828 112256091 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv764 S 9 1 0 "" NA19240 nsv397319 8 112237402 112237754 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415897 M 24 "" nsv508523 8 112360716 112373216 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618841 S 4 0 1 "" NA10860 nsv471762 8 112363134 112368265 CNV Loss Hinds et al 2006 16327809 Oligo_aCGH,PCR Custom Perlegen arrays nssv646043 M 1.631 95 "" nsv397505 8 112363229 112366316 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416083 M 24 "" nsv442527 8 112363455 112364436 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv396324 8 112380484 112387762 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv414902 M 24 "" nsv465763 8 112394240 112781214 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541508 S 1557 0 1 "" 1780862360_A nsv433251 8 112470017 112524840 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463132 S 9 0 1 "" NA15510 nsv831424 8 112613664 112775932 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447428 S 95 1 0 "" dgv471n21 8 112645854 112804764 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv521997,nsv521821 M 2026 0 2 "" nsv525808 8 112648947 112685591 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701992 S 2026 0 1 "" nsv465764 8 112648947 112693377 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541509 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00160 nsv6349 8 112872460 112909812 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8539 S 9 0 1 "" NA12156 nsv6350 8 112934108 112978819 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8540 S 9 0 1 "" NA12156 nsv465765 8 113046555 113129808 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541510 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01347 nsv471763 8 113064819 113065106 CNV Loss Hinds et al 2006 16327809 Oligo_aCGH,PCR Custom Perlegen arrays nssv646044 M 0.063 95 "" nsv6351 8 113136532 113171108 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9468 S 9 0 1 "" NA18517 nsv396227 8 113154613 113154942 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv414805 M 24 "" nsv397857 8 113260975 113260975 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416435 M 24 "" nsv397178 8 113261017 113261017 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415756 M 24 "" nsv398191 8 113295039 113295381 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416769 M 24 "" nsv518270 8 113510014 113519213 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695701 S 2026 0 1 "" nsv831427 8 113563495 113768440 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447430 S 95 0 1 "" nsv524089 8 113830319 113921953 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699961 S 2026 1 0 "" nsv465766 8 114028382 114094881 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541511 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01337 nsv6352 8 114055456 114088675 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5123 S 9 1 0 "" NA19129 nsv831428 8 114172159 114389978 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447431 S 95 1 0 "" nsv507482 8 114387596 114393596 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621925 S 4 1 0 "" NA10860 nsv831429 8 114507737 114664741 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447432 S 95 0 1 "" nsv523752 8 114544229 114578348 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699569 S 2026 0 1 "" esv32891 8 114608976 114612964 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100049 S 51 0 1 "" 22086 nsv818649 8 114629553 114634992 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417897 S 112 1 0 "" NA18852 nsv818650 8 114644039 115546776 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416078 S 112 1 0 "" NA12801 essv20921 8 114644879 115391133 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12801 nsv6353 8 114714323 114745612 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3682 S 9 1 0 "" NA12878 nsv6355 8 114778480 114823246 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8541 S 9 0 1 "" NA12156 nsv8372 8 114800095 114807999 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17677 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA11830 nsv465769 8 114884852 114906174 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541512 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01368 nsv518188 8 114885218 114887911 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695610 S 2026 0 1 "" nsv818651 8 114918139 114969743 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418479 S 112 0 1 "" NA19193 essv25038 8 114954608 115280348 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12801 nsv510983 8 114975055 115005454 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621609 S 4 0 0 "" NA15510 esv33010 8 114982031 114982439 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98805 S 51 0 1 "" 21606 nsv507483 8 114982619 114988619 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623053,nssv621926,nssv617776 M 4 3 0 "" CHM,NA10860,NA18994 nsv507484 8 114998023 115004023 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621927,nssv617777 M 4 2 0 "" CHM,NA10860 dgv251n6 8 115003569 115003859 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv398457,nsv398016 M 24 "" nsv8373 8 115009261 115012648 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19857 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19132 nsv8374 8 115132392 115136180 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17673 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA07048 nsv8375 8 115144075 115147694 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16385 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA10847 nsv8376 8 115147694 115150484 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16270,nssv16445,nssv18488,nssv18058,nssv17703,nssv18931,nssv21540,nssv19887 M 31 0 8 Samples from several populations that are part of the HapMap project. "" NA07048,NA10847,NA12155,NA12802,NA19132,NA19144,NA19221,NA19240 essv10146 8 115165252 115326300 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19130 nsv442118 8 115222742 115279466 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv523338 8 115223980 115278440 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699084 S 2026 0 1 "" nsv438077 8 115238845 115243377 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470033,nssv470034 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA19130,NA19131 nsv521584 8 115253840 115269899 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698200 S 2026 0 1 "" dgv895n27 8 115297043 115350017 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv465777,nsv465776 M 1557 0 2 "" HGDP00144,HGDP00189 nsv465778 8 115301193 115411853 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541516 S 1557 0 1 "" NINDS_142 dgv896n27 8 115374884 115390367 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv465780,nsv465779 M 1557 0 2 "" HGDP00577,HGDP00583 nsv521163 8 115390010 115464627 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv683369,nssv685276,nssv693844 M 2026 0 3 "" nsv465784 8 115536411 115575346 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541520 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00647 nsv516943 8 115631498 115672835 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv687276,nssv655104 M 2026 2 0 "" nsv438078 8 115653282 115724060 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470040,nssv470039,nssv470036,nssv470035,nssv470038,nssv470037 M 269 0 5 Samples from several populations that are part of the HapMap project. "" NA18612,NA18636,NA18947,NA18948,NA18956 nsv508524 8 115669704 115727017 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622602,nssv620014 M 4 0 2 "" NA15510,NA18994 nsv6356 8 115687195 115737714 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9757,nssv10638 M 9 0 2 "" NA18507,NA18956 nsv398069 8 115688098 115688156 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416647 M 24 "" nsv517280 8 115695278 115711712 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv681363,nssv652496,nssv683572,nssv665350,nssv661391,nssv690841,nssv654681,nssv671921,nssv671276,nssv683266,nssv670599,nssv662869,nssv688875,nssv691038,nssv659602,nssv667076,nssv662568,nssv659908,nssv691133,nssv683904,nssv656179,nssv661432,nssv667810,nssv660576,nssv678705,nssv686281,nssv657464,nssv656623,nssv677994,nssv686151,nssv687900,nssv686303,nssv687679,nssv685260,nssv677180,nssv677112,nssv690423,nssv654836,nssv693506,nssv660874,nssv685079,nssv676565,nssv676834,nssv686411,nssv662612,nssv693732,nssv669859,nssv673248,nssv691442,nssv687374,nssv679964,nssv660258,nssv665253,nssv676166,nssv677398,nssv674991,nssv674396,nssv687062,nssv663977,nssv652948,nssv669894,nssv662724,nssv655345,nssv660640,nssv680566,nssv676527,nssv651854,nssv667697,nssv692723,nssv659137,nssv662670,nssv677037,nssv677544,nssv698757,nssv670990,nssv680684,nssv675065,nssv678917,nssv689472,nssv655981,nssv676347,nssv660615,nssv669351,nssv692323,nssv665464,nssv657060,nssv698870,nssv682856,nssv687487,nssv657175,nssv667608,nssv669205,nssv656133,nssv670945,nssv680005,nssv672094,nssv689638,nssv654334,nssv681921,nssv693220,nssv659389,nssv675483,nssv693558,nssv670547,nssv675425,nssv691277,nssv684414,nssv655294,nssv675980,nssv691784,nssv671974,nssv654195,nssv693968,nssv655925,nssv664680,nssv689598,nssv681269,nssv681659,nssv671315 M 2026 1 118 "" dgv33n14 8 115701219 115711712 CNV Loss Cooper et al 2008 18776910 SNP_array nsv433496,nsv433252 M 9 0 2 "" NA18507,NA18956 nsv8377 8 115701237 115718749 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16736,nssv15611,nssv20333,nssv17335,nssv17707,nssv17763,nssv17385,nssv16794 M 31 0 8 Samples from several populations that are part of the HapMap project. "" NA07048,NA11830,NA12872,NA18537,NA18972,NA18975,NA18980,NA19007 esv33905 8 115703066 115712529 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98701,essv100804,essv98263,essv96983,essv95583,essv93652,essv97084,essv99969,essv98429 M 51 9 0 "" 21606,21656,21772,21817,21841,21972,22075,22086,22352 nsv442528 8 115703663 115710907 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv818652 8 115711058 115711712 CNV Gain+Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416079,nssv1416949,nssv1417348,nssv1417602,nssv1416369,nssv1416080,nssv1416948,nssv1418482,nssv1415669,nssv1417044,nssv1417490,nssv1418009,nssv1418480,nssv1416370,nssv1417642,nssv1417045,nssv1417333,nssv1415670 M 112 1 17 "" NA06994,NA07000,NA07357,NA10835,NA12248,NA12801,NA12813,NA18609,NA18612,NA18855,NA18856,NA18965,NA18978,NA18992,NA19137,NA19139,NA19192,NA19194 nsv527138 8 115711058 115719585 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703526 S 2026 0 1 "" nsv831430 8 115760303 115915249 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447434,nssv1447433 M 95 1 1 "" nsv398306 8 115829179 115834849 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416884 M 24 "" esv2752194 8 115905670 116015087 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6984512,essv6984513 M 771 0 1 "" BEC_713 nsv527336 8 115932676 115935292 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703762 S 2026 0 1 "" nsv507485 8 116114065 116120065 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623054 S 4 1 0 "" NA18994 nsv518999 8 116257839 116258151 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696469 S 2026 0 1 "" nsv831431 8 116278520 116471480 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447435 S 95 0 1 "" nsv510167 8 116638849 116644849 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618298 S 4 0 1 "" CHM nsv6357 8 116809176 116853960 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8542 S 9 0 1 "" NA12156 nsv507486 8 116832519 116838519 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621928 S 4 1 0 "" NA10860 dgv2249e1 8 116948684 117250765 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv7446,essv6975 M 271 0 0 "" NA18582 nsv527309 8 116957644 117632713 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703730 S 2026 1 0 "" esv35019 8 116984000 117174737 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6986914,essv6979628,essv6979629 M 771 1 0 "" NA18582 nsv831432 8 117067679 117160888 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447436 S 95 1 0 "" nsv831433 8 117118953 117325269 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447438,nssv1447437 M 95 0 2 "" nsv6358 8 117436678 117471854 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv765 S 9 1 0 "" NA19240 essv1309 8 117692900 117714868 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18980 nsv8378 8 117698548 117702372 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17365 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18980 nsv525169 8 117699864 117701145 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701243 S 2026 0 1 "" nsv818653 8 117699864 117701145 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417218 S 112 0 1 "" NA18576 nsv442119 8 117699864 117702442 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv2250e1 8 117699864 117708713 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv6493,essv5890,essv201 M 271 0 0 "" NA18576,NA18636,NA18994 essv3425 8 117699864 117714868 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18956 nsv831434 8 117853648 118047006 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447439 S 95 1 0 "" nsv510168 8 117868843 117874843 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622169,nssv618299,nssv621346 M 4 0 3 "" CHM,NA10860,NA15510 nsv6359 8 117931822 117965858 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8543 S 9 1 0 "" NA12156 nsv6360 8 118074551 118100095 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8544 S 9 0 1 "" NA12156 nsv527876 8 118081446 118106497 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704377 S 2026 0 1 "" nsv397892 8 118292724 118293003 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416470 M 24 "" nsv831435 8 118335598 118535832 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447441 S 95 1 0 "" nsv831436 8 118453644 118612478 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447442 S 95 0 1 "" nsv831438 8 118749077 118892781 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447443 S 95 0 1 "" nsv521355 8 118797555 118797995 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697966 S 2026 0 1 "" nsv831439 8 118816533 118968299 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447444 S 95 1 0 "" nsv831440 8 118941111 119121450 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447445 S 95 1 0 "" nsv465785 8 118971109 119039481 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541521 S 1557 0 1 "" 1780862373_A dgv252n6 8 119049939 119050304 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv397395,nsv398105 M 24 "" nsv831441 8 119124551 119332151 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447446 S 95 1 0 "" esv2752195 8 119128000 119209000 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6987473,essv6984007,essv6988742 M 771 1 0 "" BEC_742 nsv526044 8 119148377 119151385 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702278 S 2026 0 1 "" nsv821660 8 119151243 119381364 CNV Loss Sebat_et_al_2004 15273396 ROMA Custom Nimblegen photoprint 85000 probe ROMA oligo array nssv1421216 S 31 0 1 "" nsv831442 8 119250856 119459303 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447447 S 95 0 1 "" nsv8379 8 119281718 119285726 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19272 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18502 nsv8381 8 119315263 119319122 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21570 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19221 nsv6361 8 119331973 119365964 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv766 S 9 1 0 "" NA19240 nsv8382 8 119393405 119410247 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18329 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19173 nsv831443 8 119459771 119659843 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447448 S 95 1 0 "" nsv516067 8 119489440 119490201 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv654419,nssv665980 M 2026 0 2 "" nsv519793 8 119516601 119517449 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697055 S 2026 0 1 "" nsv510169 8 119570869 119576869 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621347 S 4 0 1 "" NA15510 nsv6362 8 119623917 119668450 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1767 S 9 0 1 "" NA18555 nsv465786 8 119696852 119836346 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541522 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00262 nsv465787 8 119710350 119795423 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541523 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00054 nsv831444 8 119826536 119985147 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447449 S 95 0 1 "" nsv517081 8 119941620 119956070 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv653756,nssv696487,nssv662592 M 2026 0 3 "" nsv8383 8 119995336 120003603 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19917 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19132 essv8481 8 120012490 120193443 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18516 essv5532 8 120020198 120344931 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18529 nsv522241 8 120064878 120097052 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695021 S 2026 0 1 "" nsv437631 8 120085144 120120837 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467512 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19240 nsv8384 8 120088183 120098730 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18961,nssv18148,nssv19873 M 31 0 3 Samples from several populations that are part of the HapMap project. "" NA18504,NA19144,NA19240 nsv465788 8 120088774 120091667 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541524 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01285 nsv818654 8 120088774 120091667 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416855,nssv1418296,nssv1418168,nssv1418297,nssv1418167,nssv1418169,nssv1416856,nssv1416854 M 112 0 8 "" NA19093,NA19094,NA19143,NA19144,NA19145,NA19238,NA19239,NA19240 nsv515918 8 120088774 120098890 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv675553,nssv677252,nssv683634,nssv661212,nssv652297,nssv653492,nssv675272,nssv653223,nssv657285,nssv679033,nssv655415,nssv680726,nssv666425,nssv680476,nssv678157,nssv679815,nssv675457,nssv661752,nssv666910,nssv666169,nssv687186,nssv693947,nssv666573,nssv658136,nssv655390,nssv688181,nssv686323,nssv663590,nssv681350,nssv670498,nssv673976,nssv672095,nssv699570,nssv660641,nssv684376,nssv671246,nssv664796,nssv686538,nssv666356,nssv663745,nssv690357,nssv693077,nssv663910,nssv660549,nssv659078,nssv685109,nssv653588,nssv672501,nssv670520,nssv660394,nssv689009,nssv661308,nssv671689,nssv663226,nssv681679,nssv691495,nssv651755,nssv667761,nssv674038,nssv665887,nssv673811,nssv657516,nssv663995,nssv684723,nssv666931,nssv673696,nssv652792,nssv686851,nssv677584,nssv686588,nssv678877,nssv665000,nssv660604,nssv693921,nssv669394,nssv694089,nssv658647,nssv660701,nssv685853,nssv658700,nssv673544,nssv664765,nssv664174,nssv663312,nssv667928,nssv671617,nssv684304,nssv680382,nssv690469,nssv689225,nssv680100,nssv685570,nssv675651,nssv669523 M 2026 1 93 "" nsv521945 8 120195147 120196767 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694714 S 2026 1 0 "" nsv8385 8 120218251 120230470 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18518,nssv16937,nssv18249,nssv17796,nssv16475,nssv16522,nssv16796,nssv21600,nssv17793,nssv15641,nssv19903,nssv17132,nssv17476,nssv16309,nssv18991,nssv17395,nssv20363,nssv17344,nssv16824,nssv17778,nssv16300,nssv17445,nssv17767 M 31 23 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10847,NA10863,NA11830,NA12155,NA12740,NA12802,NA12872,NA18504,NA18537,NA18552,NA18563,NA18564,NA18572,NA18942,NA18972,NA18975,NA18980,NA19007,NA19221,NA19240 nsv6363 8 120219412 120258138 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5124,nssv3683 M 9 0 2 "" NA12878,NA19129 nsv395817 8 120223724 120230396 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv414395 M 24 "" nsv442529 8 120223965 120228627 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv510170 8 120271300 120277300 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618300 S 4 0 1 "" CHM nsv521624 8 120503157 120504886 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698242 S 2026 0 1 "" nsv527032 8 120503157 120519178 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703407 S 2026 0 1 "" nsv510171 8 120843463 120849463 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618301 S 4 0 1 "" CHM nsv524750 8 121059249 121062315 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700741 S 2026 0 1 "" nsv528705 8 121061745 121062315 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705352 S 2026 0 1 "" nsv528628 8 121088918 121093148 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705258 S 2026 0 1 "" nsv6364 8 121176330 121221387 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8545 S 9 0 1 "" NA12156 nsv519152 8 121527638 121640447 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696629 S 2026 1 0 "" nsv6366 8 121593009 121599835 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8547 S 9 0 1 "" NA12156 nsv6367 8 121644109 121664094 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3684 S 9 1 0 "" NA12878 nsv6368 8 121673155 121707615 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2798 S 9 1 0 "" NA18555 nsv6369 8 121723846 121769101 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8548 S 9 0 1 "" NA12156 nsv396363 8 121750854 121751172 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv414941 M 24 "" nsv527545 8 121763500 121763831 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704006 S 2026 1 0 "" nsv518562 8 121831867 121832227 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696005 S 2026 0 1 "" dgv472n21 8 121831867 121839737 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv527375,nsv518569 M 2026 0 2 "" essv10963 8 121834882 121898100 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19092 dgv253n6 8 121923941 121924259 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv396486,nsv397169 M 24 "" nsv437632 8 121930646 121946257 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467513 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19129 nsv438079 8 121941910 121942526 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470043,nssv470042 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA19127,NA19129 nsv528893 8 121983746 121997743 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705577 S 2026 0 1 "" nsv396462 8 121999786 121999891 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415040 M 24 "" nsv398319 8 122283003 122283003 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416897 M 24 "" nsv520756 8 122387731 122411127 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv690053,nssv685468,nssv675034,nssv677931 M 2026 4 0 "" nsv465791 8 122389741 122411127 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541525 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00931 nsv442120 8 122390260 122408901 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv831445 8 122406058 122578481 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447450 S 95 1 0 "" nsv520758 8 122474278 122496853 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv690054,nssv701273,nssv675035 M 2026 3 0 "" nsv465793 8 122474278 122521501 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541526 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01199 nsv442121 8 122474363 122496536 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv525416 8 122494517 122514503 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701540 S 2026 0 1 "" nsv527877 8 122495263 122541478 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704378 S 2026 0 1 "" nsv396288 8 122520637 122520792 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv414866 M 24 "" nsv520451 8 122534792 122535608 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697429 S 2026 0 1 "" nsv6370 8 122539710 122575047 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv767 S 9 1 0 "" NA19240 nsv524843 8 122579622 122588116 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700845 S 2026 1 0 "" nsv831446 8 122604220 122781140 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447452 S 95 0 1 "" esv33669 8 122732489 122732754 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97193,essv99381 M 51 2 0 "" 22075,22335 esv32856 8 122733919 122743541 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100074 S 51 0 1 "" 22086 esv2752207 8 122938832 123031029 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6984304,essv6989941 M 771 0 1 "" BEC_687 nsv465795 8 122964440 123078880 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541528 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01095 nsv465796 8 123073238 123129701 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541529 S 1557 0 1 "" 1780862195_A nsv465797 8 123109377 123116590 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541530 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01241 nsv471764 8 123127800 123130521 CNV Loss Hinds et al 2006 16327809 Oligo_aCGH,PCR Custom Perlegen arrays nssv646045 M 0.108 95 "" nsv8386 8 123127942 123130522 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20504,nssv19911 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18517,NA18860 nsv818656 8 123129597 123130027 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416763,nssv1416762 M 112 0 2 "" NA19159,NA19161 nsv516987 8 123129597 123131375 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv658137,nssv654023,nssv694140,nssv671797,nssv657795,nssv674322,nssv689528,nssv665280,nssv676494,nssv681982,nssv667929,nssv676188,nssv656712,nssv680759,nssv653556,nssv677683,nssv674429,nssv673324,nssv674841,nssv686884,nssv679412,nssv667455,nssv659860,nssv663531,nssv667353,nssv681423,nssv658271,nssv662593,nssv665420,nssv676437,nssv686243,nssv673812,nssv665507,nssv671951,nssv687508,nssv672502,nssv662034,nssv656370,nssv666574,nssv671455,nssv683905,nssv671137,nssv663821,nssv653398,nssv685571,nssv671690,nssv673977,nssv687877,nssv699370,nssv671600,nssv692389,nssv673215,nssv674262,nssv693507,nssv686610,nssv661851,nssv668066,nssv690822,nssv676971,nssv671654,nssv686324,nssv690470,nssv663096,nssv665465,nssv681386,nssv686511,nssv688675,nssv656558,nssv673739,nssv686539,nssv665912,nssv667478,nssv652677,nssv666442,nssv671633 M 2026 1 74 "" nsv818657 8 123129597 123131375 CNV Gain+Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418298,nssv1416465,nssv1417898,nssv1416464 M 112 1 3 "" NA18516,NA18517,NA18852,NA19093 nsv438080 8 123139715 123146817 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470044 S 269 0 1 Samples from several populations that are part of the HapMap project. "" NA18516 nsv465798 8 123252137 123740177 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541531 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01095 nsv510172 8 123255106 123261106 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618302,nssv621348 M 4 0 2 "" CHM,NA15510 nsv507487 8 123396528 123402528 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621929,nssv620430,nssv623055 M 4 3 0 "" NA10860,NA15510,NA18994 nsv831447 8 123525927 123697987 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447453,nssv1447454 M 95 1 1 "" nsv465800 8 123621921 123677896 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541532 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00699 nsv6371 8 123706924 123721053 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv768 S 9 1 0 "" NA19240 nsv521469 8 124242076 124247107 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698079 S 2026 0 1 "" nsv831449 8 124345866 124540921 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447455 S 95 0 1 "" nsv831450 8 124540922 124730540 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447456 S 95 1 0 "" nsv525935 8 124569328 124576109 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702141 S 2026 1 0 "" nsv525827 8 124624416 124634492 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702016 S 2026 0 1 "" nsv520481 8 124634384 124634492 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697445 S 2026 0 1 "" nsv6372 8 124757941 124759367 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5125 S 9 1 0 "" NA19129 nsv831451 8 124780127 124954329 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447458,nssv1447457 M 95 1 1 "" nsv6373 8 124810748 124855790 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8549 S 9 0 1 "" NA12156 nsv507488 8 124901411 124907411 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623056,nssv617778,nssv620432,nssv621930 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv6374 8 124923338 124968590 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8550 S 9 0 1 "" NA12156 nsv523612 8 124924957 124926481 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699408 S 2026 0 1 "" nsv395998 8 124937344 124937344 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv414576 M 24 "" nsv510173 8 124959232 124965232 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618303 S 4 0 1 "" CHM nsv6375 8 125125724 125156439 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8551 S 9 0 1 "" NA12156 nsv510985 8 125158824 125189075 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622388 S 4 0 0 "" NA10860 nsv831452 8 125168889 125329107 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447459 S 95 1 0 "" nsv396418 8 125223259 125223259 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv414996 M 24 "" nsv397298 8 125223260 125223260 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415876 M 24 "" nsv521356 8 125378236 125473944 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697967 S 2026 0 1 "" nsv516190 8 125392192 125412622 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv666684,nssv677995,nssv678955,nssv691278 M 2026 0 4 "" nsv527751 8 125407397 125500211 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704237 S 2026 0 1 "" nsv397554 8 125467348 125467405 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416132 M 24 "" nsv397732 8 125485456 125485604 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416310 M 24 "" nsv465801 8 125634509 125645862 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541533 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00862 nsv525649 8 125634509 125669999 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701803 S 2026 1 0 "" nsv465802 8 125639325 125645862 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541534 S 1557 0 1 "" 1780854205_A nsv528287 8 125639981 125640838 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704859 S 2026 1 0 "" nsv396843 8 125683630 125683630 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415421 M 24 "" nsv507489 8 125780124 125786124 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623057 S 4 1 0 "" NA18994 nsv517427 8 125818888 125835452 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv664797,nssv693078,nssv663137,nssv668260,nssv652000,nssv660969 M 2026 6 0 "" nsv397542 8 125836615 125836615 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416120 M 24 "" nsv528288 8 125907308 125916538 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704860 S 2026 1 0 "" nsv527372 8 125971596 125974839 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703804 S 2026 0 1 "" nsv398300 8 125998340 125998389 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416878 M 24 "" nsv510174 8 125999229 126005229 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618304,nssv622170 M 4 0 2 "" CHM,NA10860 nsv465803 8 126137379 126201998 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541535 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01418 nsv509276 8 126441135 126530539 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619532 S 4 1 0 "" NA10860 nsv396567 8 126472606 126479084 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415145 M 24 "" nsv397442 8 126485461 126489787 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416020 M 24 "" nsv397506 8 126559403 126559564 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416084 M 24 "" nsv6377 8 126648802 126708435 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6249,nssv1768,nssv11196,nssv3685,nssv10639,nssv5126,nssv769 M 9 0 7 "" NA12156,NA12878,NA15510,NA18555,NA18956,NA19129,NA19240 nsv38 8 126662647 126708435 CNV Loss Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv38 S 1 0 1 "" NA15510 dgv254n6 8 126664304 126670324 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv396836,nsv396311 M 24 "" nsv7419 8 126775889 129803035 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv770 S 9 0 0 "" NA19240 nsv6378 8 126878036 126889727 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8552 S 9 0 1 "" NA12156 nsv6379 8 126910333 126942210 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6251 S 9 1 0 "" NA12156 nsv831453 8 126928764 127123353 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447460 S 95 1 0 "" nsv524724 8 126957771 126964458 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700711 S 2026 1 0 "" nsv395994 8 127017043 127024219 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv414572 M 24 "" nsv521643 8 127079224 127087997 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698263 S 2026 0 1 "" nsv395935 8 127156111 127156111 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv414513 M 24 "" nsv6380 8 127189631 127223027 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8553 S 9 1 0 "" NA12156 nsv465804 8 127294920 127346508 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541536 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01290 nsv831454 8 127298427 127470974 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447461,nssv1447463 M 95 2 0 "" nsv442122 8 127346504 127348627 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv398140 8 127439443 127439443 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416718 M 24 "" nsv528870 8 127450528 127455376 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705550 S 2026 0 1 "" nsv522894 8 127450879 127485749 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698552 S 2026 1 0 "" nsv522099 8 127507365 127507948 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694871 S 2026 0 1 "" nsv6381 8 127552518 127573873 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9758 S 9 1 0 "" NA18507 nsv521078 8 127739521 127744348 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv687603,nssv681321 M 2026 0 2 "" nsv831455 8 127750944 127855439 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447464 S 95 0 1 "" nsv515671 8 127867756 127892844 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv664326,nssv661888 M 2026 0 2 "" nsv397060 8 127906066 127906601 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415638 M 24 "" nsv6382 8 127914628 127959731 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8554 S 9 0 1 "" NA12156 nsv831456 8 127930765 128094690 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447465 S 95 1 0 "" nsv507490 8 127977808 127983808 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617779,nssv623058,nssv621931,nssv620433 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv517839 8 128048306 128050431 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695244 S 2026 0 1 "" nsv397684 8 128079174 128079174 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416262 M 24 "" nsv6383 8 128122573 128156234 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8556 S 9 1 0 "" NA12156 nsv526759 8 128131764 128144872 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703109 S 2026 0 1 "" nsv831457 8 128164553 128342032 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447466 S 95 1 0 "" nsv508525 8 128215527 128282481 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618842 S 4 0 1 "" NA10860 nsv517444 8 128565688 128601055 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv665108,nssv680133,nssv668192,nssv678361,nssv691039,nssv652036 M 2026 0 6 "" nsv6384 8 128655545 128686642 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10640 S 9 1 0 "" NA18956 nsv507491 8 128661699 128667699 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620434,nssv621932 M 4 2 0 "" NA10860,NA15510 nsv6385 8 128702699 128748146 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6252 S 9 0 1 "" NA12156 esv2752208 8 128714000 128977143 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6984213,essv6984214,essv6987529 M 771 1 0 "" BEC_806 nsv831458 8 128784030 128957168 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447469,nssv1447468,nssv1447467,nssv1447470 M 95 0 4 "" nsv516713 8 128808953 128837336 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv690823,nssv688896,nssv702593,nssv680986,nssv655252,nssv670329,nssv672834,nssv695912,nssv674107,nssv687604 M 2026 2 8 "" nsv6386 8 128825076 128868512 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5127,nssv771 M 9 2 0 "" NA19129,NA19240 nsv397550 8 128950220 128950220 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416128 M 24 "" nsv396423 8 128950231 128950231 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415001 M 24 "" nsv520172 8 129016957 129017198 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv685828,nssv661340 M 2026 0 2 "" nsv524801 8 129024607 129034734 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700793 S 2026 0 1 "" nsv523895 8 129119976 129126294 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699738 S 2026 0 1 "" nsv6388 8 129159416 129195156 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8557 S 9 0 1 "" NA12156 nsv528321 8 129207845 129220171 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704902 S 2026 0 1 "" nsv507492 8 129270321 129276321 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617780,nssv620435 M 4 2 0 "" CHM,NA15510 nsv520611 8 129298882 129299376 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv679656,nssv679933,nssv673230 M 2026 0 3 "" nsv6389 8 129326060 129361327 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3687 S 9 1 0 "" NA12878 nsv6390 8 129461246 129493250 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10641 S 9 1 0 "" NA18956 nsv6391 8 129503741 129569709 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5128,nssv9918,nssv1769,nssv772,nssv10642,nssv9469,nssv3688,nssv6253 M 9 0 8 "" NA12156,NA12878,NA18507,NA18517,NA18555,NA18956,NA19129,NA19240 nsv508527 8 129527752 129553983 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622603,nssv620015,nssv618843,nssv617365 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv465806 8 129534206 129693249 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541538 S 1557 0 1 "" 1780854206_A dgv255n6 8 129534336 129540463 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv396171,nsv398468 M 24 "" nsv465807 8 129541703 129553356 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541539 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00734 nsv527164 8 129542194 129764191 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703558 S 2026 0 1 "" essv3176 8 129633607 129784954 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19012 nsv509277 8 129780555 129809847 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619533,nssv623545,nssv620913 M 4 3 0 "" NA10860,NA15510,NA18994 nsv6392 8 129785677 129818007 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5129 S 9 1 0 "" NA19129 nsv508528 8 129809847 129862747 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618844 S 4 0 1 "" NA10860 nsv6393 8 129834071 129867872 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2800,nssv5130 M 9 2 0 "" NA18555,NA19129 nsv517445 8 129929106 129950481 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv681322,nssv668964,nssv652037,nssv682145,nssv671820,nssv682190,nssv674962 M 2026 0 7 "" nsv397845 8 129952083 129952083 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416423 M 24 "" nsv437633 8 130083382 130091439 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467514 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18860 nsv442530 8 130211860 130213708 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv831460 8 130254862 130435399 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447471 S 95 1 0 "" nsv6394 8 130490684 130515217 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv773 S 9 0 1 "" NA19240 nsv519611 8 130658858 130659199 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696950 S 2026 1 0 "" nsv523007 8 130658858 130659199 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698679 S 2026 0 1 "" nsv525691 8 130696737 130701112 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701850 S 2026 1 0 "" nsv8387 8 130780241 130825836 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19947,nssv21630 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA19132,NA19221 nsv510986 8 130806969 130836747 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618664 S 4 0 0 "" CHM nsv509278 8 130813150 130836747 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619534 S 4 1 0 "" NA10860 nsv6395 8 130816133 130854581 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1770,nssv774,nssv6254,nssv11197,nssv5131 M 9 5 0 "" NA12156,NA15510,NA18555,NA19129,NA19240 nsv39 8 130824995 130854581 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv39 S 1 1 0 "" NA15510 nsv522535 8 130873475 130913582 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705909 S 2026 1 0 "" nsv526686 8 130878155 130908314 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703019 S 2026 0 1 "" nsv524349 8 130937545 131201774 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700257 S 2026 1 0 "" nsv398375 8 130976863 130976863 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416953 M 24 "" nsv6396 8 130984046 131003212 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8558 S 9 1 0 "" NA12156 nsv521998 8 130990344 131001609 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694767 S 2026 0 1 "" nsv465808 8 131032441 131187840 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541540 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01097 nsv398482 8 131050460 131051856 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv417060 M 24 "" nsv397955 8 131088101 131088101 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416533 M 24 "" nsv465810 8 131108291 131400194 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541541 S 1557 1 0 "" 1780862212_A nsv831461 8 131229001 131372082 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447474,nssv1447472 M 95 2 0 "" nsv507493 8 131348917 131354917 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623059 S 4 1 0 "" NA18994 nsv396330 8 131751449 131751951 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv414908 M 24 "" nsv831462 8 131773301 131964975 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447475 S 95 1 0 "" nsv396197 8 131919933 131921920 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv414775 M 24 "" nsv525692 8 131935521 131957444 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701851 S 2026 1 0 "" nsv6397 8 132055376 132090399 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv776 S 9 1 0 "" NA19240 nsv6399 8 132191319 132236690 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6255 S 9 0 1 "" NA12156 nsv398269 8 132237484 132237796 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416847 M 24 "" nsv517761 8 132272071 132321621 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv671975,nssv660110,nssv653149 M 2026 0 3 "" nsv465811 8 132272071 132326126 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541542 S 1557 0 1 "" 1780862410_A nsv6400 8 132321951 132356206 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3689 S 9 1 0 "" NA12878 nsv528585 8 132324654 132326126 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705207 S 2026 0 1 "" nsv508529 8 132338494 132372444 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620016,nssv617366 M 4 0 2 "" CHM,NA15510 nsv523000 8 132373690 132398482 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698672 S 2026 0 1 "" nsv521358 8 132373690 132421333 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697968 S 2026 0 1 "" nsv465812 8 132497693 132633840 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541543 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01271 dgv897n27 8 132528131 132647856 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv465814,nsv465815 M 1557 2 0 "" HGDP00688,HGDP01279 nsv397046 8 132635404 132635477 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415624 M 24 "" nsv518107 8 132692128 132696340 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695520 S 2026 0 1 "" nsv526552 8 132746775 132777104 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702866 S 2026 1 0 "" nsv396604 8 133011907 133011907 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415182 M 24 "" nsv442123 8 133060271 133063758 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" esv33463 8 133069835 133070348 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98866 S 51 0 1 "" 21606 nsv397361 8 133090304 133099603 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415939 M 24 "" nsv517297 8 133129494 133130328 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv681134,nssv672749,nssv657373,nssv664175,nssv666531,nssv669261,nssv652913,nssv664766,nssv673813,nssv655697,nssv657517,nssv683635,nssv671952,nssv673978,nssv686512,nssv676093,nssv677038,nssv653348,nssv690805,nssv672198,nssv654236,nssv663591,nssv672820,nssv669765,nssv668521,nssv658908,nssv684173,nssv667536,nssv659210,nssv679746 M 2026 0 30 "" nsv517992 8 133129494 133133678 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695405 S 2026 0 1 "" nsv6401 8 133161488 133194917 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8559 S 9 1 0 "" NA12156 nsv507494 8 133180038 133186038 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621933,nssv620436,nssv617781 M 4 3 0 "" CHM,NA10860,NA15510 nsv465817 8 133360679 133388980 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541547 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01003 nsv527996 8 133420085 133420302 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704521 S 2026 0 1 "" dgv2251e1 8 133470532 133650145 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv19569,essv20127,essv7013,essv15201,essv5221,essv19206,essv23671,essv9798 M 271 0 0 "" NA07345,NA10838,NA10863,NA12864,NA18611,NA18612,NA18863,NA19094 dgv2252e1 8 133470532 133754071 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv3289,essv15804,essv14402,essv22886,essv13810,essv8787,essv692,essv1910,essv8487,essv22537,essv13633,essv11236,essv4994,essv7791,essv1247,essv17597,essv10807,essv20769,essv2279,essv22091,essv15142,essv308,essv24816,essv8745,essv5251,essv19604,essv5039,essv11804,essv15493,essv17793,essv7777,essv16167,essv3720,essv18605,essv11141,essv7080,essv12797,essv2337,essv22170,essv21803,essv5111,essv4833,essv23905,essv18371,essv3882,essv19651,essv13693,essv20584,essv9380,essv2089,essv845,essv10022,essv7366,essv2894,essv14560,essv20374,essv8954,essv23251,essv18859,essv7610,essv6349,essv14359,essv4057,essv7405,essv5490,essv13462,essv13091,esv353,essv10925,essv11519,essv24505,essv21182,essv13863,essv4276,essv10676,essv15580,essv7714,essv23329,essv22631,essv2810,essv8381,essv13012,essv24565,essv23828,essv23562,essv12621,essv18111,essv9404,essv15371,essv14110,essv14421,essv21137,essv6685,essv4413,essv23507,essv6958,essv10824,essv5803,essv18336,essv16781,essv17117,essv19194,essv16431,essv21971,essv17713,essv1776,essv12710,essv18318,essv22308,essv18761,essv17048,essv11845,essv20183,essv1428,essv22829,essv23146,essv16213,essv231,essv15429,essv20634,essv1184,essv13549,essv12448,essv476,essv22743,essv5164,essv16690,essv16043,essv10359,essv4735,essv7234,essv21428,essv6808,essv2219,essv14790,essv3765,essv19775,essv1106,essv23398,essv11774,essv16835,essv18972,essv2627,essv3119,essv3983 M 271 0 0 "" NA06985,NA06993,NA07019,NA07029,NA07034,NA07056,NA07348,NA10830,NA10831,NA10835,NA10846,NA10854,NA10857,NA10860,NA11830,NA11832,NA11992,NA11993,NA11994,NA11995,NA12004,NA12005,NA12146,NA12154,NA12155,NA12234,NA12239,NA12249,NA12264,NA12717,NA12750,NA12751,NA12752,NA12753,NA12760,NA12763,NA12802,NA12814,NA12815,NA12865,NA12872,NA12874,NA12891,NA12892,NA18500,NA18501,NA18504,NA18505,NA18507,NA18508,NA18516,NA18521,NA18523,NA18537,NA18540,NA18542,NA18545,NA18547,NA18558,NA18564,NA18566,NA18570,NA18573,NA18576,NA18577,NA18579,NA18582,NA18603,NA18608,NA18609,NA18620,NA18623,NA18624,NA18632,NA18633,NA18635,NA18637,NA18852,NA18853,NA18854,NA18855,NA18858,NA18859,NA18861,NA18862,NA18871,NA18872,NA18914,NA18940,NA18944,NA18947,NA18948,NA18949,NA18951,NA18952,NA18953,NA18960,NA18961,NA18964,NA18966,NA18967,NA18969,NA18970,NA18972,NA18973,NA18975,NA18976,NA18978,NA18987,NA18994,NA18995,NA18997,NA19092,NA19099,NA19100,NA19119,NA19120,NA19127,NA19129,NA19137,NA19139,NA19142,NA19153,NA19159,NA19160,NA19161,NA19171,NA19172,NA19173,NA19192,NA19194,NA19200,NA19201,NA19202,NA19203,NA19204,NA19205,NA19207,NA19208,NA19209,NA19211,NA19221,NA19222,NA19223 dgv2253e1 8 133564090 133754071 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv10431,essv3386 M 271 0 0 "" NA18515,NA18945 nsv831463 8 133804634 133987182 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447476 S 95 1 0 "" dgv256n6 8 133827795 133827934 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv398410,nsv396661 M 24 "" nsv509279 8 133942005 134023264 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619535 S 4 1 0 "" NA10860 esv33367 8 133950488 133951058 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99524 S 51 0 1 "" 22335 esv32666 8 133966699 133969713 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99526 S 51 1 0 "" 22335 esv32776 8 134054679 134054836 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98550,essv98015,essv99365 M 51 3 0 "" 22085,22259,22335 esv33561 8 134069889 134070082 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98064 S 51 0 1 "" 22259 esv32991 8 134102753 134103460 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99529 S 51 0 1 "" 22335 nsv6402 8 134125023 134154254 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10643 S 9 1 0 "" NA18956 nsv525105 8 134158836 134160329 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701164 S 2026 0 1 "" esv33548 8 134162735 134163857 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98079,essv99450 M 51 2 0 "" 22259,22335 nsv465818 8 134174503 134203855 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541548 S 1557 0 1 "" 1780862484_A nsv526697 8 134209728 134249059 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703035 S 2026 0 1 "" nsv6403 8 134214347 134248154 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3690 S 9 1 0 "" NA12878 dgv2254e1 8 134236863 134249655 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv11342,esv894 M 271 0 0 "" NA19128 nsv517333 8 134238349 134249059 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv670183,nssv659762,nssv667369,nssv657306,nssv651756,nssv666227,nssv674263 M 2026 0 7 "" nsv519775 8 134347037 134354989 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv658465,nssv658520 M 2026 0 2 "" nsv831464 8 134351820 134544029 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447477 S 95 0 1 "" nsv515902 8 134392759 134396554 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv665212,nssv702279,nssv698243,nssv684809 M 2026 2 2 "" nsv396953 8 134398627 134398948 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415531 M 24 "" nsv516732 8 134455519 134463459 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv670499,nssv692015,nssv655374 M 2026 0 3 "" nsv524031 8 134455519 134497425 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699894 S 2026 0 1 "" nsv524719 8 134455881 134481279 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700704 S 2026 0 1 "" nsv6404 8 134510048 134543698 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8560 S 9 1 0 "" NA12156 nsv516099 8 134533858 134534241 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv683232,nssv668765,nssv666186 M 2026 0 3 "" nsv6405 8 134553939 134598817 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8561 S 9 0 1 "" NA12156 nsv528683 8 134569429 134569991 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705325 S 2026 0 1 "" nsv520436 8 134696137 134713751 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv671382,nssv671634,nssv701865 M 2026 0 3 "" nsv831465 8 134707520 134896260 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447478,nssv1447480,nssv1447479 M 95 0 3 "" nsv398161 8 134724455 134724455 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416739 M 24 "" nsv465819 8 134734221 134746071 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541549 S 1557 0 1 "" 1798860371_A nsv520662 8 134750738 134755247 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697543 S 2026 0 1 "" nsv523219 8 134758757 134896018 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698941 S 2026 1 0 "" nsv508530 8 134778780 134801806 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617367 S 4 0 1 "" CHM nsv397011 8 134934593 134934593 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415589 M 24 "" nsv6406 8 134955522 135000202 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8562 S 9 0 1 "" NA12156 nsv521660 8 135017247 135022811 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698277 S 2026 0 1 "" nsv437634 8 135069594 135074477 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467515 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19205 nsv8388 8 135127707 135138000 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16826,nssv16854 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18975,NA19007 nsv465820 8 135129150 135135129 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541550 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00758 nsv442531 8 135130437 135135890 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv2255e1 8 135130463 135131756 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1045,essv7256,esv890,essv609,essv3318,essv3614 M 271 0 0 "" NA18635,NA18947,NA18948,NA18969,NA18975 nsv6407 8 135133365 135188617 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3691,nssv11198,nssv777,nssv5134,nssv6256 M 9 0 5 "" NA12156,NA12878,NA15510,NA19129,NA19240 nsv508531 8 135133881 135158832 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620017 S 4 0 1 "" NA15510 nsv517468 8 135133983 135135129 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv691406,nssv688624,nssv674323,nssv670184,nssv661701,nssv652111,nssv686077 M 2026 0 7 "" nsv40 8 135141298 135188617 CNV Loss Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv40 S 1 0 1 "" NA15510 nsv396633 8 135152112 135158213 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415211 M 24 "" nsv831466 8 135154542 135319239 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447481,nssv1447482 M 95 2 0 "" dgv2256e1 8 135212786 135244049 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv9275,essv12101,esv1160 M 271 0 0 "" NA19099,NA19137 nsv397783 8 135321075 135323008 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416361 M 24 "" nsv398370 8 135346528 135346528 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416948 M 24 "" nsv831467 8 135383624 135520671 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447483 S 95 1 0 "" nsv396547 8 135521053 135521124 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415125 M 24 "" nsv525439 8 135726935 135734300 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701567 S 2026 0 1 "" nsv397081 8 135739776 135748917 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415659 M 24 "" nsv397734 8 135949093 135949093 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416312 M 24 "" nsv6408 8 135980355 135984862 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2801 S 9 1 0 "" NA18555 nsv831468 8 136207383 136388703 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447485 S 95 1 0 "" nsv507495 8 136253732 136259732 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623060,nssv620437 M 4 2 0 "" NA15510,NA18994 nsv396858 8 136272224 136272224 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415436 M 24 "" nsv6411 8 136279793 136324607 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8563 S 9 0 1 "" NA12156 nsv528589 8 136450777 136474066 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705214 S 2026 0 1 "" nsv6412 8 136593241 136594930 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8564 S 9 1 0 "" NA12156 nsv524132 8 136627865 136677351 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700010 S 2026 0 1 "" nsv831469 8 136691972 136890023 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447486 S 95 1 0 "" nsv442124 8 136692574 136694147 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv526020 8 136840051 136841906 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702250 S 2026 0 1 "" nsv397378 8 136916614 136916729 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415956 M 24 "" nsv831471 8 137015734 137195022 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447487 S 95 1 0 "" nsv515957 8 137092988 137095742 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv684583,nssv665466,nssv701780 M 2026 0 3 "" nsv6413 8 137114991 137147092 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5135 S 9 1 0 "" NA19129 nsv522308 8 137215600 137355370 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695088 S 2026 1 0 "" nsv6414 8 137225929 137244164 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3692,nssv4615 M 9 0 2 "" NA12878,NA19129 nsv465822 8 137362343 137390988 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541551 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00559 nsv433497 8 137370623 137381178 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463378 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA18956 nsv6415 8 137454497 137467103 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9759 S 9 1 0 "" NA18507 dgv473n21 8 137578654 137579685 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv522867,nsv520473 M 2026 0 2 "" dgv2257e1 8 137585971 138040412 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv18395,essv23001,essv19781,essv20165,esv838,essv18753 M 271 0 0 "" NA07357,NA10835,NA11832,NA12249,NA12874 dgv31e196 8 137608702 137817175 CNV Deletion Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array esv2422411,esv2422462 M 181 0 2 "" ND01688,ND01885 nsv831472 8 137671007 137841775 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447488 S 95 0 1 "" nsv6416 8 137694669 137724756 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10644 S 9 1 0 "" NA18956 dgv252e55 8 137726974 137980282 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv2752221,esv2752216,esv2752219,esv2752218,esv2752217,esv2752233,esv2752234,esv2752232,esv34538,esv34324,esv2752240,esv2752211,esv2752212,esv2752213,esv2752214,esv2752215,esv2752220,esv2752222,esv2752223,esv2752224,esv2752225,esv2752226,esv2752227,esv2752228,esv2752229,esv2752230,esv2752231,esv2752235,esv2752236,esv2752239,esv34379,esv34900,esv35104,esv35111,esv2752237,esv2752238 M 771 0 36 "" BEC_175,BEC_177,BEC_333,BEC_353,BEC_362,BEC_402,BEC_405,BEC_406,BEC_408,BEC_516,BEC_543,BEC_565,BEC_575,BEC_603,BEC_625,BEC_644,BEC_669,BEC_735,BEC_737,BEC_91,NA07357,NA10835,NA11832,NA12056,NA12249,NA12874,SPC_129,SPC_133,SPC_156,SPC_163,SPC_167,SPC_173,SPC_194,SPC_3,SPC_36,SPC_52 nsv515708 8 137732671 137932941 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv684000,nssv654975,nssv686058,nssv691740,nssv658957,nssv659952,nssv660043,nssv674812,nssv673521,nssv666140,nssv662613,nssv657730,nssv655926,nssv659062,nssv690855,nssv668147,nssv672558,nssv663365,nssv672462,nssv682214,nssv666933,nssv664420,nssv654716,nssv658312,nssv667698,nssv687375,nssv652009,nssv685547,nssv693320,nssv688876,nssv679310,nssv687993,nssv687786,nssv662336,nssv673835,nssv695269,nssv679553,nssv684215,nssv683353,nssv663746,nssv677181,nssv670145,nssv678497,nssv655437,nssv670869,nssv678261,nssv654088,nssv656315,nssv688350,nssv660221,nssv691342,nssv667872,nssv674397,nssv689807,nssv687568,nssv688605,nssv689560,nssv665508,nssv684308,nssv674861,nssv691562,nssv691576,nssv669289,nssv673626,nssv679934,nssv665600,nssv682040,nssv656033,nssv683937,nssv676094,nssv655197,nssv657854,nssv667481,nssv677563,nssv667041,nssv669416,nssv669459,nssv654555,nssv667609,nssv666771,nssv659044,nssv689160,nssv658568,nssv670132,nssv683731,nssv704893,nssv665846 M 2026 0 87 "" dgv898n27 8 137746857 137948247 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv465865,nsv465837,nsv465917,nsv465836,nsv465919,nsv465846,nsv465843,nsv465918,nsv465856,nsv465840,nsv465847,nsv465920,nsv465830,nsv465860,nsv465857,nsv465848,nsv465868,nsv465870,nsv465874,nsv465842,nsv465864,nsv465867,nsv465855,nsv465873,nsv465854,nsv465835,nsv465863,nsv465880,nsv465859,nsv465862,nsv465882,nsv465871,nsv465869,nsv465924,nsv465858,nsv465845,nsv465849,nsv465866,nsv465852,nsv465926,nsv465851,nsv465841,nsv465881,nsv465844,nsv465853 M 1557 0 45 "" 1780854095_A,1780854129_A,1780854334_A,1780854455_A,1780854566_A,1780862002_A,1780862014_A,1780862101_A,1780862227_A,1780862274_A,1780862452_A,1782681096_A,1782681217_A,1782681317_A,1798860361_A,1798860594_A,HGDP00003,HGDP00025,HGDP00037,HGDP00072,HGDP00076,HGDP00141,HGDP00144,HGDP00150,HGDP00155,HGDP00259,HGDP00279,HGDP00330,HGDP00338,HGDP00518,HGDP00559,HGDP00564,HGDP00584,HGDP00594,HGDP00622,HGDP00667,HGDP00670,HGDP00892,HGDP01075,HGDP01386,NINDS_13,NINDS_136,NINDS_14,NINDS_240,NINDS_82 esv32811 8 137754694 137919337 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv92667 S 51 0 1 "" 21944 nsv818658 8 137757137 137920837 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416255,nssv1418010,nssv1415671,nssv1415770,nssv1415674 M 112 0 5 "" NA07357,NA10835,NA12056,NA12249,NA12874 dgv2258e1 8 137757137 137969110 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv18677,essv20746,essv20476,essv20491,essv18472,essv17675 M 271 0 0 "" NA07357,NA10835,NA11832,NA12056,NA12249,NA12874 essv24473 8 137760390 138040412 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12056 nsv8389 8 137763097 137782255 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17150,nssv19933 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18504,NA18853 nsv831473 8 137773471 137919464 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447490,nssv1447489 M 95 1 1 "" nsv398085 8 137786012 137786337 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416663 M 24 "" dgv899n27 8 137796899 137932941 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv465930,nsv465932,nsv465931,nsv465929 M 1557 0 4 "" 1780854511_A,HGDP00148,NINDS_102,NINDS_215 nsv6417 8 137807984 137823638 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8565 S 9 0 1 "" NA12156 nsv437079 8 137814359 137931782 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv466960 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA10835 nsv526775 8 137832092 137979397 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703127 S 2026 1 0 "" nsv442532 8 137836926 137925499 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv465933 8 137848567 137867553 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541611 S 1557 0 1 "" NINDS_116 nsv465934 8 137859169 137920837 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541612 S 1557 0 1 "" 1780854058_A nsv465936 8 137895355 137909582 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541613 S 1557 0 1 "" NINDS_125 nsv438083 8 137909582 137920941 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470045,nssv470046 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA10835,NA12249 nsv507496 8 137928981 137934981 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623061,nssv620439,nssv617782 M 4 3 0 "" CHM,NA15510,NA18994 nsv519195 8 137974247 137988611 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696679 S 2026 0 1 "" nsv831474 8 138033807 138179780 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447491,nssv1447492 M 95 1 1 "" nsv518850 8 138060228 138061959 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696303 S 2026 0 1 "" nsv527455 8 138126549 138198738 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703897 S 2026 1 0 "" nsv520483 8 138126549 138385179 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697446 S 2026 1 0 "" nsv397719 8 138218307 138218358 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416297 M 24 "" nsv396770 8 138269360 138269604 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415348 M 24 "" nsv831475 8 138275001 138426000 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447493 S 95 0 1 "" nsv520144 8 138305697 138310309 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697247 S 2026 0 1 "" nsv398235 8 138377029 138377193 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416813 M 24 "" nsv507497 8 138386613 138392613 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617783 S 4 1 0 "" CHM nsv396128 8 138426911 138426911 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv414706 M 24 "" nsv465937 8 138507052 138631593 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541614 S 1557 0 1 "" 1780862595_A nsv522635 8 138778500 138828924 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv706033 S 2026 1 0 "" nsv396043 8 138812150 138813045 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv414621 M 24 "" nsv517417 8 138870446 138871060 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv680365,nssv653224,nssv680442,nssv659234,nssv664749,nssv667354,nssv666806,nssv651960,nssv676330,nssv654455,nssv691496,nssv658340,nssv657176,nssv671798,nssv672906,nssv663097,nssv684774 M 2026 0 17 "" nsv831476 8 138881259 139063561 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447494 S 95 1 0 "" nsv396994 8 138886322 138888624 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415572 M 24 "" nsv396554 8 138955977 138965623 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415132 M 24 "" nsv397029 8 138996200 138996200 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415607 M 24 "" nsv8390 8 139048858 139054524 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18178 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19144 dgv2259e1 8 139050457 139114328 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv3258,esv878 M 271 0 0 "" NA18967 nsv831477 8 139078132 139229545 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447496 S 95 0 1 "" nsv509281 8 139247429 139289340 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623546 S 4 1 0 "" NA18994 nsv395932 8 139282872 139283550 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv414510 M 24 "" nsv465939 8 139293683 139309774 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541616 S 1557 0 1 "" NINDS_236 nsv831478 8 139384691 139545976 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447497 S 95 1 0 "" nsv6418 8 139456210 139491050 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv778 S 9 1 0 "" NA19240 nsv525300 8 139496096 139496420 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701406 S 2026 0 1 "" nsv6419 8 139612485 139642220 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10645 S 9 1 0 "" NA18956 nsv517244 8 139838041 139843091 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv658396,nssv669444,nssv661852,nssv692814,nssv658607,nssv660191,nssv669820,nssv662911,nssv656713,nssv666329,nssv688275,nssv682248,nssv680987,nssv657012,nssv656903,nssv685527,nssv674694,nssv675459,nssv674108,nssv664441,nssv651835,nssv682306,nssv671069,nssv678609,nssv689986,nssv688536,nssv684377,nssv676242,nssv673413,nssv692228,nssv668965,nssv679631,nssv682972,nssv652266,nssv655016,nssv681238,nssv663015,nssv656293,nssv667042,nssv658984,nssv686852,nssv674210,nssv668339,nssv676884,nssv672778,nssv663767,nssv679913,nssv680101,nssv655417,nssv677744,nssv655160,nssv657673,nssv693079,nssv687771,nssv661258,nssv654113,nssv673611,nssv669103,nssv658341,nssv689370,nssv666266,nssv683354,nssv691994,nssv669460,nssv679413,nssv684740,nssv692390,nssv666772,nssv681845,nssv678106,nssv663454,nssv663660,nssv684848,nssv665847,nssv665913,nssv682760,nssv660143,nssv691241,nssv668865,nssv688677,nssv658157,nssv672835,nssv656066,nssv678177,nssv680025,nssv676767,nssv675612,nssv692016,nssv671409,nssv657061,nssv685391,nssv677932,nssv689688,nssv657696,nssv658421,nssv684174,nssv665959,nssv689905,nssv672603,nssv692979,nssv665281,nssv683201,nssv673325,nssv690140 M 2026 102 2 "" nsv521435 8 139843066 139844252 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694446 S 2026 1 0 "" nsv519838 8 139938492 139940650 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv658985,nssv676885,nssv689987 M 2026 0 3 "" nsv520099 8 139980721 139986008 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv660745,nssv678384,nssv680120,nssv686043 M 2026 0 4 "" nsv526443 8 139980721 139988449 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702746 S 2026 0 1 "" nsv507498 8 140016999 140022999 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623062,nssv617784,nssv621934,nssv620440 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv397632 8 140083253 140083369 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416210 M 24 "" nsv396677 8 140083311 140083427 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415255 M 24 "" nsv519290 8 140088180 140090202 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696771 S 2026 0 1 "" nsv518241 8 140088180 140093351 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695673 S 2026 0 1 "" nsv524541 8 140163078 140208116 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700491 S 2026 0 1 "" nsv523023 8 140182096 140227476 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698702 S 2026 0 1 "" nsv6420 8 140204129 140237941 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3693 S 9 1 0 "" NA12878 nsv507499 8 140265533 140271533 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621935 S 4 1 0 "" NA10860 dgv2260e1 8 140327110 140328379 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1155,essv12132 M 271 0 0 "" NA19173 nsv518541 8 140358168 140372239 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695985 S 2026 0 1 "" nsv524663 8 140399778 140521054 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700632 S 2026 1 0 "" nsv831479 8 140401809 140430509 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447498,nssv1447502,nssv1447501,nssv1447504,nssv1447503,nssv1447505,nssv1447500,nssv1447499 M 95 0 8 "" nsv398121 8 140491377 140491531 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416699 M 24 "" nsv6422 8 140496145 140541183 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8566 S 9 0 1 "" NA12156 dgv257n6 8 140544441 140544783 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv396719,nsv395808 M 24 "" nsv6423 8 140654474 140698887 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1771 S 9 0 1 "" NA18555 nsv515503 8 140658831 140660763 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv658663,nssv653349 M 2026 2 0 "" nsv442125 8 140673518 140675508 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv6424 8 140673910 140677571 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5136 S 9 1 0 "" NA19129 nsv522721 8 140713751 140725052 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698352 S 2026 0 1 "" nsv525709 8 140714686 140747601 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701871 S 2026 1 0 "" nsv6425 8 140751136 140797606 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6257 S 9 0 1 "" NA12156 nsv397287 8 140759189 140759408 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415865 M 24 "" nsv397727 8 140768917 140768986 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416305 M 24 "" nsv465942 8 140772366 140811036 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541617 S 1557 0 1 "" 1780862093_A nsv524756 8 140777899 140779139 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700747 S 2026 1 0 "" nsv521446 8 140817276 140821201 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694447 S 2026 0 1 "" dgv900n27 8 140828138 140875114 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv465946,nsv465945 M 1557 0 2 "" 1780862156_A,1780862403_A dgv901n27 8 140846433 140892147 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv465948,nsv465947 M 1557 0 2 "" HGDP00527,NINDS_111 nsv831480 8 140919525 141098715 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447507 S 95 0 1 "" nsv518058 8 140956822 140983812 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695469 S 2026 0 1 "" nsv396941 8 141011464 141011464 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415519 M 24 "" nsv397143 8 141011521 141011521 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415721 M 24 "" dgv2261e1 8 141036810 141046387 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv3921,esv1116 M 271 0 0 "" NA18960 nsv396630 8 141040679 141040732 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415208 M 24 "" nsv509282 8 141041764 141083646 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623547 S 4 1 0 "" NA18994 nsv524624 8 141114914 141115086 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700586 S 2026 0 1 "" nsv522837 8 141114914 141129209 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698488 S 2026 0 1 "" nsv6426 8 141118070 141153097 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8567 S 9 0 1 "" NA12156 nsv507500 8 141209398 141215398 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620441 S 4 1 0 "" NA15510 nsv521508 8 141308196 141381723 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698125 S 2026 0 1 "" nsv509283 8 141514296 141601682 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620914 S 4 1 0 "" NA15510 nsv524887 8 141527676 141537142 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700893 S 2026 0 1 "" nsv465951 8 141527676 141599239 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541623 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00663 nsv397785 8 141552317 141553984 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416363 M 24 "" nsv6427 8 141641416 141705434 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5137,nssv779 M 9 2 0 "" NA19129,NA19240 nsv465952 8 141690220 141748999 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541624 S 1557 0 1 "" 1780862444_A nsv526444 8 141709476 142107091 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702747 S 2026 1 0 "" nsv831482 8 142015496 142175683 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447508 S 95 0 1 "" nsv524300 8 142065125 142072236 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700201 S 2026 1 0 "" nsv8392 8 142070908 142110862 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20534,nssv19963 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA18504,NA18517 nsv438084 8 142072079 142073375 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470047 S 269 0 1 Samples from several populations that are part of the HapMap project. "" NA19116 nsv509284 8 142089395 142209014 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619536 S 4 1 0 "" NA10860 nsv398136 8 142153391 142153391 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416714 M 24 "" nsv396950 8 142153393 142153393 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415528 M 24 "" nsv526368 8 142168429 142174126 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702663 S 2026 0 1 "" nsv831483 8 142202743 142369651 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447509 S 95 1 0 "" nsv516666 8 142288992 142310420 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv671883,nssv693448,nssv656371,nssv670018 M 2026 0 4 "" nsv6428 8 142291249 142324812 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8569 S 9 1 0 "" NA12156 nsv465955 8 142305519 142325898 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541625 S 1557 0 1 "" NINDS_194 nsv516911 8 142322438 142331509 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv689959,nssv688315,nssv654910,nssv675492,nssv662940,nssv691965,nssv675861,nssv682528,nssv697609 M 2026 1 8 "" nsv522318 8 142322438 142371206 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694155 S 2026 0 1 "" nsv831484 8 142337249 142491552 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447510 S 95 0 1 "" nsv465956 8 142349265 142503053 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541626 S 1557 1 0 "" 1780862071_A nsv6429 8 142358652 142423004 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1772,nssv6258 M 9 0 2 "" NA12156,NA18555 nsv509285 8 142385772 142584535 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623548,nssv619538,nssv619537,nssv623549 M 4 2 0 "" NA10860,NA18994 nsv465957 8 142402607 142457437 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541627 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00713 nsv465958 8 142405862 142528214 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541628 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00402 nsv465959 8 142439838 142512371 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541629 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00856 nsv6430 8 142466867 142472633 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv780 S 9 1 0 "" NA19240 nsv398456 8 142474850 142474901 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv417034 M 24 "" nsv6431 8 142489554 142505732 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10646,nssv3694,nssv8570,nssv5138,nssv2802 M 9 5 0 "" NA12156,NA12878,NA18555,NA18956,NA19129 nsv397582 8 142493154 142493154 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416160 M 24 "" dgv902n27 8 142502439 142536757 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv465960,nsv465963,nsv465962 M 1557 0 3 "" 1782681313_A,HGDP00784,NINDS_111 nsv397559 8 142516502 142516612 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416137 M 24 "" nsv524817 8 142529990 142536757 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700811 S 2026 0 1 "" nsv465964 8 142538260 142559261 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541634 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01075 nsv517560 8 142560420 142565324 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv676649,nssv680988,nssv657062,nssv669104,nssv692768,nssv695137,nssv652357,nssv663455,nssv704861,nssv674862,nssv661392,nssv703002,nssv670725,nssv685676 M 2026 11 3 "" nsv6433 8 142567758 142590455 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1773 S 9 1 0 "" NA18555 nsv398406 8 142571655 142571777 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416984 M 24 "" nsv521766 8 142577090 142582314 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694533 S 2026 1 0 "" nsv465966 8 142586404 142613592 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541635 S 1557 0 1 "" NINDS_70 nsv465967 8 142599893 142625987 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541636 S 1557 0 1 "" NINDS_4 nsv516333 8 142600146 142602117 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv667645,nssv662614 M 2026 0 2 "" nsv465968 8 142618960 142655292 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541637 S 1557 0 1 "" NINDS_272 nsv396282 8 142628674 142628757 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv414860 M 24 "" dgv903n27 8 142644713 142682236 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv465973,nsv465974,nsv465975 M 1557 0 3 "" HGDP01163,HGDP01339,HGDP01351 nsv509286 8 142665749 142863512 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619539,nssv623550,nssv623551,nssv620915,nssv619540 M 4 3 0 "" NA10860,NA15510,NA18994 nsv6434 8 142695540 142736783 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3696,nssv781 M 9 2 0 "" NA12878,NA19240 nsv526295 8 142702107 142702812 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702576 S 2026 0 1 "" nsv818659 8 142716870 142718373 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417899 S 112 0 1 "" NA18853 nsv398378 8 142724188 142724244 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416956 M 24 "" nsv465976 8 142776025 142800507 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541642 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00875 nsv465977 8 142796991 142814556 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541643 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00838 nsv516547 8 142800438 142800507 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv687901,nssv669056,nssv683984 M 2026 0 3 "" nsv6435 8 142836270 142867429 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv782,nssv3697,nssv6261 M 9 3 0 "" NA12156,NA12878,NA19240 nsv509287 8 142921492 142955151 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619541,nssv620916 M 4 2 0 "" NA10860,NA15510 nsv442126 8 142926302 142931358 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv397374 8 142950926 142951011 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415952 M 24 "" nsv509288 8 143037137 143128693 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620917,nssv619543 M 4 2 0 "" NA10860,NA15510 nsv396975 8 143140331 143140420 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415553 M 24 "" nsv398080 8 143175940 143175940 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416658 M 24 "" dgv70n64 8 143231219 143232830 CNV Loss Wang_et_al_2007 17921354 SNP_array nsv818661,nsv818660 M 112 0 2 "" NA18968,NA18971 nsv818662 8 143231219 143245585 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417290 S 112 0 1 "" NA18608 nsv396920 8 143243770 143243770 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415498 M 24 "" nsv509289 8 143257103 143338545 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619544,nssv623552 M 4 2 0 "" NA10860,NA18994 nsv465984 8 143321016 143392115 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541645 S 1557 0 1 "" 1780862444_A nsv510175 8 143340122 143346122 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624073 S 4 0 1 "" NA18994 nsv465985 8 143360944 143401600 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541646 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00438 nsv465986 8 143388522 143414319 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541647 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00832 esv33359 8 143395422 143396265 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101417,essv97943 M 51 2 0 "" 21805,21837 nsv465987 8 143403196 143456740 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541648 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00774 nsv396730 8 143429411 143429461 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415308 M 24 "" dgv2262e1 8 143460347 143679430 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv20524,esv1309 M 271 0 0 "" NA12716 nsv8393 8 143481293 143484232 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19302 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18502 nsv6436 8 143631938 143654534 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv783 S 9 1 0 "" NA19240 dgv904n27 8 143650366 143691186 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv465990,nsv465989 M 1557 0 2 "" HGDP00607,HGDP00619 nsv818663 8 143653023 143678903 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417291 S 112 0 1 "" NA18608 nsv396450 8 143717704 143717775 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415028 M 24 "" nsv831485 8 143746092 143852945 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447511 S 95 0 1 "" nsv831486 8 143762931 143916668 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447512 S 95 1 0 "" esv33000 8 143848902 143850157 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101322 S 51 1 0 "" 21805 nsv396254 8 143855797 143855890 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv414832 M 24 "" nsv528545 8 143903890 143917299 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705157 S 2026 0 1 "" nsv520940 8 143923929 143951225 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv679788,nssv678107 M 2026 2 0 "" nsv482123 8 143950777 143958238 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558484 S 1 1 0 "" KB1 nsv521110 8 144004941 144005183 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv682364,nssv693923 M 2026 0 2 "" nsv395856 8 144129629 144129828 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv414434 M 24 "" nsv465991 8 144173868 144236804 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541651 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00949 esv33872 8 144191422 144192676 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv96107 S 51 1 0 "" 22007 nsv6437 8 144203816 144238531 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1774,nssv6262,nssv784 M 9 3 0 "" NA12156,NA18555,NA19240 nsv524696 8 144240466 144246305 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700675 S 2026 0 1 "" nsv528834 8 144263833 144273229 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705509 S 2026 0 1 "" nsv465992 8 144337489 144406670 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541652 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01215 nsv6438 8 144347821 144383961 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv11199,nssv8571 M 9 2 0 "" NA12156,NA15510 nsv41 8 144354955 144383961 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv41 S 1 1 0 "" NA15510 nsv395807 8 144371259 144371875 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv414385 M 24 "" esv33151 8 144447276 144448878 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101624,essv92708,essv96157 M 51 3 0 "" 21909,21944,22007 nsv397650 8 144527055 144527055 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416228 M 24 "" nsv831487 8 144587890 144673902 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447513 S 95 1 0 "" nsv465993 8 144625874 144650385 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541653 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00772 dgv905n27 8 144630308 144686338 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv465996,nsv465995 M 1557 0 2 "" HGDP00864,NINDS_111 dgv259n6 8 144674700 144674768 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv398362,nsv396982 M 24 "" nsv516210 8 144686338 144768796 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv683035,nssv680783,nssv671277,nssv684285,nssv662894,nssv688537,nssv673102,nssv697287,nssv662870,nssv656600,nssv656372,nssv677886,nssv679976,nssv680459,nssv701314,nssv657960,nssv655982,nssv677040,nssv682249,nssv678918,nssv666839,nssv680416,nssv660204,nssv655075,nssv679311,nssv669057,nssv679483,nssv689298,nssv669128,nssv661241,nssv688015,nssv680102,nssv671663,nssv685503 M 2026 0 34 "" nsv466000 8 144704699 144735737 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541657 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00491 nsv466004 8 144734804 144793335 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541658 S 1557 0 1 "" NINDS_50 nsv831488 8 144743767 144838602 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447516,nssv1447514,nssv1447515 M 95 0 3 "" nsv6439 8 144759832 144804595 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10647,nssv3698,nssv11200,nssv5139 M 9 0 4 "" NA12878,NA15510,NA18956,NA19129 nsv42 8 144763913 144788813 CNV Loss Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv42 S 1 0 1 "" NA15510 nsv8394 8 144771440 144786099 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19332,nssv17823,nssv17808,nssv19941,nssv20564,nssv17826,nssv18208,nssv16552,nssv17455 M 31 7 2 Samples from several populations that are part of the HapMap project. "" NA07048,NA10863,NA18502,NA18517,NA18564,NA18860,NA18942,NA18980,NA19144 nsv442533 8 144776300 144778949 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" esv33279 8 144785565 144785822 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv94718,essv94355,essv95383,essv95926,essv92731,essv96676,essv92575,essv99315,essv100133 M 51 9 0 "" 21791,21808,21872,21911,21944,22011,22233,22275,22286 nsv6440 8 144798256 144831443 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5140 S 9 1 0 "" NA19129 nsv397432 8 144820508 144820508 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416010 M 24 "" nsv466007 8 144844832 144932865 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541660 S 1557 0 1 "" 1780862444_A nsv519816 8 144849509 144894025 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697066 S 2026 0 1 "" nsv6441 8 144867638 144900325 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1775 S 9 1 0 "" NA18555 nsv6442 8 144935988 144980451 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4616 S 9 0 1 "" NA19129 nsv398483 8 144962602 144962602 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv417061 M 24 "" nsv466009 8 144966484 145046951 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541661 S 1557 0 1 "" 1780862347_A dgv906n27 8 144999260 145288211 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv466010,nsv466012,nsv466013 M 1557 0 3 "" 1780862304_A,HGDP00491,HGDP00950 nsv6444 8 145000411 145022079 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10648,nssv785,nssv9919,nssv9470,nssv6263,nssv3699,nssv1776,nssv5141 M 9 8 0 "" NA12156,NA12878,NA18507,NA18517,NA18555,NA18956,NA19129,NA19240 nsv396174 8 145030063 145030183 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv414752 M 24 "" nsv396670 8 145030187 145030187 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415248 M 24 "" nsv515809 8 145050595 145715426 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv657105,nssv678442,nssv675373,nssv690379,nssv705660,nssv664838,nssv704389,nssv674649,nssv669632,nssv699069,nssv659811,nssv689689,nssv677163,nssv681012,nssv700446,nssv688165,nssv683355,nssv684895,nssv705822,nssv697495,nssv660144,nssv702166,nssv683295,nssv658922 M 2026 1 23 "" nsv818664 8 145079175 145090342 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417900 S 112 0 1 "" NA18853 nsv6445 8 145107571 145140678 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8572 S 9 1 0 "" NA12156 nsv466014 8 145153236 145351076 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541665 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01177 nsv6446 8 145158685 145176939 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5142,nssv10649,nssv787,nssv1779,nssv3700 M 9 5 0 "" NA12878,NA18555,NA18956,NA19129,NA19240 nsv6447 8 145191556 145214280 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8573 S 9 1 0 "" NA12156 dgv2263e1 8 145203172 145357632 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv240,essv16359 M 271 0 0 "" NA19193 nsv6448 8 145229056 145255155 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5143 S 9 1 0 "" NA19129 nsv8395 8 145260806 145290638 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19362,nssv20594,nssv21660,nssv18548 M 31 3 1 Samples from several populations that are part of the HapMap project. "" NA12155,NA18502,NA18517,NA19221 nsv397598 8 145306812 145306866 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416176 M 24 "" nsv398283 8 145306867 145306921 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416861 M 24 "" nsv508532 8 145351919 145405160 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618845 S 4 0 1 "" NA10860 nsv8396 8 145364657 145555757 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18279,nssv17162,nssv17838,nssv21690,nssv19392 M 31 5 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA12740,NA18502,NA18564,NA19221 nsv396397 8 145476168 145476227 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv414975 M 24 "" dgv2264e1 8 145494501 145668486 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1034,esv28,essv4846 M 271 0 0 "" NA18540,NA19005 nsv831489 8 145536610 145740218 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447532,nssv1447524,nssv1447520,nssv1447519,nssv1447523,nssv1447522,nssv1447521,nssv1447531,nssv1447525,nssv1447527,nssv1447526,nssv1447528,nssv1447530,nssv1447534,nssv1447535,nssv1447533 M 95 0 16 "" nsv8397 8 145572258 145578581 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17485 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18980 dgv907n27 8 145612372 145721314 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv466019,nsv466022 M 1557 0 2 "" 1780862014_A,HGDP00433 nsv482124 8 145619808 145624735 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558485 S 1 1 0 "" KB1 nsv466020 8 145623814 145639251 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541668 S 1557 0 1 "" 1780854517_A nsv395802 8 145640648 145640701 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv414380 M 24 "" nsv482126 8 145692917 145698311 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558487 S 1 1 0 "" KB1 nsv482127 8 145714199 145721365 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558488 S 1 1 0 "" KB1 nsv522459 8 145715426 146041482 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705823 S 2026 0 1 "" nsv831490 8 145749309 145882680 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447538,nssv1447537,nssv1447536 M 95 0 3 "" nsv397749 8 145813563 145813622 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv416327 M 24 "" nsv398470 8 145820746 145821561 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv417048 M 24 "" nsv509290 8 145835580 145893602 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619545,nssv623553 M 4 2 0 "" NA10860,NA18994 nsv6449 8 145866720 145892921 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3701 S 9 1 0 "" NA12878 nsv396913 8 145958628 145958700 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415491 M 24 "" nsv523879 8 145995756 146002506 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699721 S 2026 0 1 "" nsv396906 8 146013751 146013885 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415484 M 24 "" nsv397373 8 146017904 146017904 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv415951 M 24 "" nsv519962 8 146021800 146022007 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697150 S 2026 0 1 "" nsv469809 8 146038512 146236298 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649830 M 265 0 1 Samples from several populations that are part of the HapMap project. "" nsv6450 8 146046315 146078662 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5145 S 9 1 0 "" NA19129 nsv519737 8 146106670 146142241 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697021 S 2026 0 1 "" dgv2265e1 8 146120191 146264218 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv10958,esv1078 M 271 0 0 "" NA19092 nsv524560 8 146144440 146174216 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700514 S 2026 1 0 "" nsv527660 8 146166636 146189313 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704132 S 2026 0 1 "" nsv466024 8 146166636 146263890 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541670 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01307 nsv508533 8 146166948 146252493 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622604 S 4 0 1 "" NA18994 nsv515504 8 146189245 146245512 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv685622,nssv699678,nssv691242,nssv681066,nssv668069,nssv673741,nssv699778,nssv653359,nssv655105,nssv690926 M 2026 1 9 "" nsv818665 8 146189245 146245512 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418299 S 112 0 1 "" NA19092 nsv466025 8 146195916 146263890 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541671 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00475 nsv8398 8 146195920 146201882 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19452 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18502 nsv466026 8 146196084 146245512 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541672 S 1557 0 1 "" 1780862306_A nsv8399 8 146248197 146249469 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21720 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19221 nsv8400 9 1 41412 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20624,nssv16330,nssv21750,nssv19971,nssv19977,nssv19993 M 31 5 1 Samples from several populations that are part of the HapMap project. "" NA12802,NA18504,NA18517,NA18860,NA19132,NA19221 nsv471464 9 4511 19739 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548353,nssv548351,nssv548352 M 3 "" nsv482128 9 4511 19739 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558489 S 1 1 0 "" KB1 dgv2266e1 9 21994 293073 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv865,essv5412,essv5892,essv7034,essv2896,essv20010,essv3415,essv15474 M 271 0 0 "" NA07048,NA18505,NA18563,NA18576,NA18612,NA18945,NA18953,NA19000 esv735 9 21994 373816 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent + Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 "" dgv253e55 9 30910 307370 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv2752302,esv34610,esv2752301,esv2752303,esv34714 M 771 5 0 "" BEC_376,BEC_501,BEC_544,NA18572,NA18576 dgv254e55 9 30910 489586 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv2752304,esv2752306 M 771 2 0 "" BEC_131,BEC_635 nsv515505 9 36587 439700 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv706085,nssv653362,nssv662594,nssv659213,nssv666773,nssv692287,nssv666039,nssv668624,nssv662116,nssv686304,nssv657757 M 2026 10 1 "" nsv8401 9 46139 49087 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17868 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18564 nsv8403 9 52805 314255 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18238,nssv20654,nssv16884,nssv19021,nssv16369,nssv17856,nssv17506,nssv17192,nssv20393,nssv16856,nssv17515,nssv16582,nssv16967,nssv15671,nssv18578,nssv16339,nssv16505 M 31 8 8 Samples from several populations that are part of the HapMap project. "" NA07029,NA10847,NA10863,NA12155,NA12872,NA18517,NA18552,NA18563,NA18572,NA18942,NA18972,NA18975,NA18980,NA19007,NA19144,NA19240 nsv471465 9 111038 169075 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548357,nssv548354,nssv548358 M 3 "" essv1889 9 116314 293073 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18976 dgv2267e1 9 116314 373816 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv6378,essv6516 M 271 0 0 "" NA18572 nsv442127 9 139481 264606 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv466028 9 194201 219826 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541674 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01095 nsv818668 9 194201 256999 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417232 S 112 1 0 "" NA18576 dgv908n27 9 194201 280670 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv466029,nsv466030,nsv466036,nsv466037,nsv466041,nsv466039 M 1557 6 0 "" 1780862355_A,1780862466_A,1780862484_A,HGDP00884,HGDP01153,NINDS_182 dgv909n27 9 194201 388673 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv466042,nsv466043 M 1557 2 0 "" HGDP00141,HGDP00521 esv32541 9 195098 261286 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv96444 S 51 1 0 "" 22261 nsv438085 9 205917 238749 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470048 S 269 0 1 Samples from several populations that are part of the HapMap project. "" NA18576 nsv466044 9 228389 624160 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541684 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01276 nsv6451 9 257688 291547 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3702 S 9 1 0 "" NA12878 nsv437636 9 334229 337559 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467517 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19120 esv33469 9 351747 361827 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98791 S 51 0 1 "" 21606 esv2752307 9 372810 723212 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6988944,essv6985787,essv6985788,essv6987261,essv6987260 M 771 1 0 "" SPC_47 nsv416232 9 393897 393994 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434810 M 24 "" nsv518784 9 447290 450072 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696238 S 2026 0 1 "" nsv416638 9 459450 459629 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv435216 M 24 "" nsv527958 9 479338 516772 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704468 S 2026 0 1 "" nsv433253 9 493735 516772 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463134 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA19129 nsv6452 9 495156 533550 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv788,nssv5146 M 9 0 2 "" NA19129,NA19240 nsv416596 9 498545 498825 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv435174 M 24 "" nsv8404 9 504417 520198 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19051,nssv19482,nssv20684 M 31 0 3 Samples from several populations that are part of the HapMap project. "" NA18502,NA18517,NA19240 nsv818669 9 505616 511172 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416371 S 112 0 1 "" NA18855 dgv34n14 9 505616 516772 CNV Loss Cooper et al 2008 18776910 SNP_array nsv433255,nsv433256 M 9 0 2 "" NA18517,NA19240 dgv910n27 9 505616 516772 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv466047,nsv466048,nsv466050 M 1557 0 3 "" HGDP00458,HGDP00460,HGDP01202 nsv818670 9 505616 516772 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416466,nssv1416857,nssv1416858 M 112 0 3 "" NA18517,NA19238,NA19240 nsv466051 9 505616 521565 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541689 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01406 nsv517150 9 505616 521565 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv689351,nssv653878,nssv662160,nssv660046,nssv660318,nssv674887,nssv689949,nssv656719,nssv680162,nssv672997,nssv654302,nssv659319,nssv653401,nssv658198,nssv653071,nssv684310,nssv676333,nssv669263,nssv655093,nssv660812,nssv684449,nssv670134,nssv672516,nssv665470,nssv677368,nssv670057,nssv666359,nssv693085,nssv676192,nssv673916,nssv666864,nssv687607,nssv678837,nssv693125,nssv664151,nssv655769,nssv663409,nssv657334,nssv666534,nssv685220,nssv662595,nssv665373,nssv651761,nssv671506,nssv666578,nssv678858,nssv654027,nssv668651,nssv652499,nssv681634 M 2026 0 50 "" nsv442534 9 508099 516993 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv2268e1 9 514413 843033 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv811,essv9111,essv12968 M 271 0 0 "" NA18859,NA18860 esv33737 9 534479 553315 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93596 S 51 0 1 "" 21972 nsv528413 9 545293 546399 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705005 S 2026 1 0 "" dgv2269e1 9 554836 598703 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv12945,essv13258 M 271 0 0 "" NA19102,NA19201 nsv523525 9 558846 684511 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699298 S 2026 1 0 "" nsv528489 9 559892 559992 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705094 S 2026 0 1 "" nsv516951 9 559992 694075 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv667274,nssv659551,nssv674448,nssv665053,nssv660704,nssv668299,nssv655747,nssv679035,nssv658940,nssv687238,nssv692086,nssv676801,nssv692504,nssv677515,nssv677686,nssv661462,nssv689695,nssv679414,nssv660047,nssv693926,nssv656991,nssv689012,nssv651800,nssv667017,nssv663018,nssv674111,nssv662161,nssv654044,nssv678658,nssv685006,nssv661311,nssv671163,nssv659320,nssv655200,nssv668652,nssv669950,nssv675102,nssv665757,nssv673744,nssv687422,nssv657310,nssv690720,nssv669314,nssv689352,nssv690428,nssv679107,nssv675275,nssv662829,nssv653493,nssv672278,nssv658039,nssv665644,nssv672203,nssv685921,nssv685470,nssv677045,nssv682411,nssv661953,nssv675342,nssv684292,nssv688119,nssv683443,nssv656296,nssv665194,nssv694495,nssv677887 M 2026 0 66 "" nsv469655 9 561838 712561 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649583 M 265 0 0 Samples from several populations that are part of the HapMap project. "" nsv466052 9 573025 598622 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541690 S 1557 0 1 "" NINDS_55 dgv911n27 9 580735 603908 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv466057,nsv466062,nsv466055,nsv466053,nsv466056,nsv466058,nsv466054,nsv466059,nsv466063,nsv466064 M 1557 0 10 "" 1782681378_A,HGDP00456,HGDP00474,HGDP00478,HGDP00932,HGDP00942,HGDP01028,HGDP01415,HGDP01416,HGDP01419 nsv438086 9 581040 598622 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470049,nssv470051,nssv470050 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA18862,NA19201 nsv818671 9 581094 598622 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416764 S 112 0 1 "" NA19159 dgv2270e1 9 581610 597901 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv13299,essv14027,essv13373 M 271 0 0 "" NA18862,NA19159,NA19202 essv15173 9 581610 603260 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19210 dgv2271e1 9 581610 622131 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv10616,essv11312 M 271 0 0 "" NA18863,NA19211 nsv442535 9 581969 592903 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" esv34433 9 582757 597901 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6979948,essv6989132 M 771 0 1 "" NA18862 dgv2272e1 9 592204 728434 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv16590,essv13109 M 271 0 0 "" NA18859,NA18860 nsv8405 9 599060 695515 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20001,nssv20023,nssv16612,nssv19081,nssv17797 M 31 1 4 Samples from several populations that are part of the HapMap project. "" NA11830,NA18504,NA18860,NA18942,NA19240 dgv255e55 9 602167 708872 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv35002,esv34685 M 771 0 2 "" NA18859,NA18860 nsv6453 9 606860 639030 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv789 S 9 0 1 "" NA19240 nsv466065 9 625677 648446 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541703 S 1557 0 1 "" 1782681080_A nsv437637 9 636078 646878 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467518 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18860 nsv437638 9 665377 676753 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467519 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18860 nsv438087 9 665600 685607 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470054,nssv470053 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA18859,NA18860 nsv437639 9 676753 691026 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467520 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18860 nsv416517 9 697616 698299 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv435095 M 24 "" nsv516314 9 714217 723049 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv688434,nssv667513 M 2026 0 2 "" nsv529028 9 715147 766739 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705739 S 2026 1 0 "" nsv831491 9 784113 964142 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447539 S 95 1 0 "" nsv510176 9 834839 840839 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622171,nssv618305 M 4 0 2 "" CHM,NA10860 nsv6455 9 908351 944194 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8576 S 9 0 1 "" NA12156 nsv507501 9 1032336 1038336 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617785,nssv620442,nssv621936,nssv623064 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 dgv2273e1 9 1045347 1519128 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv807,essv22494 M 271 0 0 "" NA11882 esv2752273 9 1052218 1814888 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6986286,essv6982857,essv6988594,essv6986287 M 771 1 0 "" BEC_605 nsv525810 9 1070866 1071038 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701994 S 2026 0 1 "" nsv437640 9 1151738 1153046 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467521 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19103 essv24316 9 1173321 1403700 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA11882 esv34351 9 1174213 1403700 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6989512,essv6978537,essv6978536,essv6989030 M 771 0 1 "" NA11882 nsv818672 9 1190036 1394430 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418086 S 112 0 1 "" NA11882 nsv416748 9 1233418 1233502 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv435326 M 24 "" nsv8406 9 1238354 1252348 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19512 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18502 nsv518691 9 1287287 1287949 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696142 S 2026 0 1 "" nsv510177 9 1318994 1324994 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621349,nssv624074,nssv618306 M 4 0 3 "" CHM,NA15510,NA18994 dgv474n21 9 1436459 1440428 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv516907,nsv528289 M 2026 0 39 "" nsv516586 9 1465940 1477108 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv669397,nssv660045,nssv697121 M 2026 0 3 "" nsv466066 9 1489641 1503917 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541704 S 1557 0 1 "" NINDS_163 nsv522460 9 1489641 1503917 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705824 S 2026 0 1 "" nsv437641 9 1493647 1506692 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467522 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18872 nsv438088 9 1500299 1516383 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470056,nssv470055 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA18870,NA18872 nsv524182 9 1607716 1652585 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700064 S 2026 0 1 "" nsv522744 9 1697518 1697568 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698378 S 2026 0 1 "" nsv466067 9 1721076 1749811 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541705 S 1557 1 0 "" 1780862176_A nsv526553 9 1779663 1783162 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702867 S 2026 0 1 "" nsv466068 9 1826746 1935517 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541706 S 1557 1 0 "" 1780862125_A nsv831493 9 1875733 2064135 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447541 S 95 1 0 "" dgv912n27 9 2008825 2059765 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv466073,nsv466071,nsv466069 M 1557 0 3 "" 1780862100_A,1780862345_A,1780862414_A nsv466070 9 2014639 2034721 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541708 S 1557 0 1 "" 1780862101_A nsv466076 9 2032083 2073755 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541712 S 1557 0 1 "" 1780862093_A nsv518473 9 2034721 2044409 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695909 S 2026 0 1 "" nsv516236 9 2055892 2058747 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv666983,nssv669106,nssv670188,nssv704909 M 2026 0 4 "" nsv466077 9 2127725 2147934 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541713 S 1557 0 1 "" NINDS_104 nsv442128 9 2138837 2140663 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv6456 9 2158853 2168719 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10650 S 9 1 0 "" NA18956 nsv518986 9 2177750 2181246 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696454 S 2026 0 1 "" nsv466078 9 2208129 2611030 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541714 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00759 nsv6457 9 2218493 2261756 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8577 S 9 0 1 "" NA12156 nsv526664 9 2243678 2244498 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702993 S 2026 0 1 "" nsv466079 9 2251944 2264492 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541715 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00796 nsv466080 9 2308486 2422800 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541716 S 1557 0 1 "" 1782681317_A nsv466081 9 2343522 2586783 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541717 S 1557 1 0 "" 1780862125_A nsv415429 9 2387101 2387101 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434007 M 24 "" nsv466082 9 2393909 2411273 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541718 S 1557 0 1 "" NINDS_134 nsv525208 9 2579864 2584577 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701290 S 2026 0 1 "" nsv518550 9 2608969 2611030 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695993 S 2026 0 1 "" nsv527298 9 2611030 2621092 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703716 S 2026 0 1 "" nsv466084 9 2671397 2700537 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541719 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00986 dgv913n27 9 2680980 2700537 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv466085,nsv466086 M 1557 0 2 "" HGDP00460,HGDP00469 nsv516425 9 2680980 2780307 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700988,nssv694552,nssv674844,nssv668433,nssv668287,nssv657571,nssv699054,nssv662583,nssv694398 M 2026 1 8 "" nsv466087 9 2736548 2780307 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541722 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01338 nsv507502 9 2875491 2881491 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617786 S 4 1 0 "" CHM dgv2274e1 9 2955090 2975743 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1802,esv1177 M 271 0 0 "" NA18971 nsv466088 9 2962380 2968377 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541723 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00197 nsv831494 9 2997268 3162056 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447542 S 95 0 1 "" nsv525902 9 3004254 3012906 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702106 S 2026 0 1 "" nsv466091 9 3339487 3379660 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541724 S 1557 0 1 "" NINDS_147 nsv416089 9 3356754 3356754 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434667 M 24 "" nsv522711 9 3470671 3490471 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv706124 S 2026 1 0 "" nsv415859 9 3495339 3495339 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434437 M 24 "" nsv510178 9 3545012 3551012 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624075 S 4 0 1 "" NA18994 nsv528551 9 3856465 3856849 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705164 S 2026 0 1 "" nsv518476 9 3961303 3963853 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695913 S 2026 0 1 "" dgv2275e1 9 3998954 4012297 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv10957,esv1227 M 271 0 0 "" NA19092 nsv438089 9 4006814 4009224 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470057,nssv470058 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA19092,NA19093 nsv6458 9 4026720 4060165 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8578 S 9 1 0 "" NA12156 nsv519359 9 4036569 4040630 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv686437,nssv655621 M 2026 0 2 "" nsv416336 9 4043650 4043705 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434914 M 24 "" nsv517705 9 4104353 4108111 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv686542,nssv652914,nssv665193,nssv677438,nssv674110 M 2026 0 5 "" nsv520350 9 4193214 4348255 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv663100,nssv672852,nssv704738,nssv703731,nssv699984 M 2026 2 3 "" nsv524574 9 4209259 4533307 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700530 S 2026 1 0 "" nsv527431 9 4321717 4437405 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703870 S 2026 0 1 "" nsv416309 9 4336659 4336969 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434887 M 24 "" nsv516546 9 4385314 4407219 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv673119,nssv669047 M 2026 2 0 "" dgv914n27 9 4400854 4433086 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv466092,nsv466093 M 1557 0 2 "" HGDP01253,HGDP01276 nsv818673 9 4489426 4492575 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416374,nssv1416373 M 112 0 2 "" NA18855,NA18857 nsv515747 9 4491492 4492575 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv691930,nssv667457,nssv673699,nssv669880,nssv675805,nssv685859,nssv684727,nssv676226,nssv664665,nssv671317,nssv674041,nssv660317,nssv678526 M 2026 0 13 "" nsv8407 9 4516442 4556030 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16997 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18563 nsv466095 9 4516796 4519671 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541728 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00750 nsv517270 9 4516796 4519671 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv682583,nssv654171,nssv685189 M 2026 0 3 "" nsv818674 9 4516796 4519671 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417734,nssv1417334 M 112 0 2 "" NA18609,NA19003 dgv2276e1 9 4517262 4518816 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv753,essv7238,esv1380 M 271 0 0 "" NA18635,NA19003 nsv442536 9 4518770 4519873 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv528488 9 4532803 4532890 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705093 S 2026 0 1 "" nsv466096 9 4720743 4748022 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541729 S 1557 0 1 "" 1780854296_A nsv466097 9 4733477 4748022 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541730 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00655 nsv518048 9 4740269 4777987 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695459 S 2026 0 1 "" nsv6459 9 4819645 4839963 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8579 S 9 1 0 "" NA12156 nsv6460 9 4885242 4918196 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv790 S 9 1 0 "" NA19240 nsv517956 9 4885947 4893818 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695369 S 2026 1 0 "" nsv466098 9 4899719 4943916 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541731 S 1557 1 0 "" NINDS_34 nsv466099 9 4928232 4947650 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541732 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00131 nsv527495 9 4998070 5407881 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703943 S 2026 1 0 "" nsv466100 9 5088223 5257043 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541733 S 1557 1 0 "" NINDS_223 nsv438090 9 5102519 5103577 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470060,nssv470059 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA18505,NA19093 nsv831495 9 5136781 5335751 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447543 S 95 0 1 "" nsv525777 9 5171467 5282257 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701950 S 2026 0 1 "" dgv24e24 9 5225860 5256342 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH esv2750686,esv2750645,esv2750612,esv2750646 M 51 0 4 "" 21634,21847,21879,22231 nsv516752 9 5257043 5335673 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv691005,nssv666665,nssv693086,nssv662692,nssv661863,nssv654420,nssv687856,nssv670702,nssv693620,nssv657676,nssv669698,nssv678781,nssv663716,nssv693024,nssv683252,nssv663257,nssv661774,nssv674580,nssv689053,nssv705911,nssv694047,nssv660662,nssv692662,nssv663769,nssv667259,nssv678640,nssv653442,nssv659409,nssv667458,nssv653758,nssv686194,nssv668467,nssv673365 M 2026 9 24 "" essv18911 9 5278908 5326984 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12717 dgv2277e1 9 5278908 5444512 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv24412,esv537 M 271 0 0 "" NA12707 nsv466102 9 5282257 5325470 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541734 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00642 nsv466103 9 5296824 5325470 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541735 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00537 nsv818675 9 5296824 5325470 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417297 S 112 0 1 "" NA18608 nsv466104 9 5296824 5335673 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541736 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00351 nsv466106 9 5296824 5345536 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541738 S 1557 0 1 "" 1780846005_A nsv442130 9 5301567 5327707 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv466108 9 5335673 5504372 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541739 S 1557 1 0 "" 1798860570_A essv12011 9 5344558 5398335 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19141 nsv8408 9 5369173 5374852 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20453 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18972 nsv466109 9 5371870 5400624 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541740 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00576 nsv442131 9 5375779 5388011 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv466110 9 5375783 5382243 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541741 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00723 esv34378 9 5375783 5382330 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6980898,essv6987873 M 771 0 1 "" NA19141 essv11336 9 5375783 5398358 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19128 nsv818676 9 5376384 5382243 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415872 S 112 0 1 "" NA19141 nsv515508 9 5376384 5397628 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv681544,nssv664018,nssv680367,nssv683607,nssv679459,nssv651798,nssv690810,nssv677585,nssv662914,nssv656794,nssv675956,nssv657288,nssv665756,nssv701938,nssv676066,nssv687190,nssv689279,nssv666959,nssv680163,nssv684380,nssv675045,nssv677439,nssv683909,nssv664717,nssv689078,nssv664244,nssv675555,nssv693974,nssv653655,nssv678116,nssv683871,nssv651762,nssv671484,nssv685702,nssv652054,nssv656602,nssv667990,nssv679034,nssv693419,nssv685393,nssv673613,nssv655957,nssv675806 M 2026 0 43 "" nsv519771 9 5450910 5454065 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv681109,nssv658438,nssv659183,nssv688016,nssv691639,nssv675996,nssv676309,nssv661704 M 2026 0 8 "" nsv509292 9 5459291 5536768 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619546 S 4 1 0 "" NA10860 nsv6461 9 5460916 5490311 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10651,nssv6264 M 9 2 0 "" NA12156,NA18956 nsv6462 9 5689178 5733953 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8580 S 9 0 1 "" NA12156 nsv6463 9 5826620 5860203 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8581 S 9 1 0 "" NA12156 nsv523739 9 5860703 5862531 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699555 S 2026 0 1 "" nsv6464 9 5873378 5904698 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3703 S 9 1 0 "" NA12878 nsv6466 9 6074555 6108758 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8582 S 9 1 0 "" NA12156 nsv831496 9 6091763 6275088 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447544 S 95 1 0 "" nsv521598 9 6132157 6281125 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698215 S 2026 0 1 "" nsv6467 9 6342439 6346712 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv791 S 9 1 0 "" NA19240 nsv6468 9 6348344 6392978 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5147,nssv10652 M 9 2 0 "" NA18956,NA19129 nsv509293 9 6356939 6381154 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623554,nssv619547,nssv618073,nssv620918 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv831497 9 6367501 6602402 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447545 S 95 1 0 "" dgv475n21 9 6392856 6399874 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv523692,nsv523675 M 2026 0 2 "" nsv831498 9 6486021 6679728 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447546 S 95 0 1 "" nsv526323 9 6498149 6500453 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702612 S 2026 0 1 "" esv2752308 9 6513060 6889149 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6983017,essv6986323,essv6986324,essv6983016,essv6983018 M 771 1 0 "" BEC_533 nsv466111 9 6557841 7007391 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541742 S 1557 1 0 "" 1782681216_A dgv2278e1 9 6566991 6835561 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv854,essv18172 M 271 0 0 "" NA12057 nsv519777 9 6610059 6740556 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694346 S 2026 1 0 "" nsv416560 9 6619946 6619946 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv435138 M 24 "" nsv521556 9 6631895 6666953 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698172 S 2026 0 1 "" nsv524645 9 6640885 6654901 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700611 S 2026 0 1 "" nsv43 9 6641440 6662988 CNV Loss Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv43 S 1 0 1 "" NA15510 nsv6469 9 6641440 6662988 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv11201 S 9 0 1 "" NA15510 nsv508534 9 6650585 6660327 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620019 S 4 0 1 "" NA15510 nsv433498 9 6654282 6659474 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463379 S 9 0 1 "" NA15510 nsv466112 9 6659474 6776734 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541743 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00998 esv2752309 9 6660448 6898200 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6988800,essv6984404,essv6984405,essv6987590 M 771 1 0 "" BEC_703 nsv442132 9 6662095 6663766 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv517628 9 6662097 6666953 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv665680,nssv664770,nssv680384,nssv667168,nssv652590,nssv659647,nssv652794,nssv689321,nssv698423,nssv665213,nssv676193 M 2026 0 11 "" nsv466113 9 6662097 6721786 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541744 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00711 nsv818677 9 6663465 6663957 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416375,nssv1416376 M 112 0 2 "" NA18856,NA18857 nsv6470 9 6678118 6707908 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8583 S 9 0 1 "" NA12156 esv32977 9 6684812 6733422 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv94022 S 51 0 1 "" 21802 nsv8409 9 6685281 6701394 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17222,nssv17374 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA07029,NA10839 nsv521256 9 6685397 6687128 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv692044,nssv688759 M 2026 0 2 "" nsv466114 9 6687128 6714015 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541745 S 1557 0 1 "" 1780854338_A essv18872 9 6691130 6695914 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA07029 nsv831499 9 6713287 6920933 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447547 S 95 0 1 "" essv2425 9 6733440 6835561 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18951 nsv466115 9 6740556 6849189 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541746 S 1557 1 0 "" 1780854098_A nsv818679 9 6753072 6778085 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417403 S 112 0 1 "" NA18951 esv35116 9 6759429 6788091 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6980093,essv6980092,essv6988310 M 771 0 1 "" NA18951 nsv524069 9 6827912 6870263 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699937 S 2026 1 0 "" nsv831500 9 6837952 6982535 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447548 S 95 0 1 "" nsv831501 9 6858099 7048526 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447549 S 95 1 0 "" nsv416139 9 6878788 6879101 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434717 M 24 "" nsv522977 9 6988948 6994340 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698647 S 2026 0 1 "" nsv466117 9 7020268 7074558 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541748 S 1557 1 0 "" 1780862573_A nsv523788 9 7054934 7065305 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699615 S 2026 0 1 "" nsv524896 9 7131418 8328431 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700903 S 2026 1 0 "" nsv519762 9 7153530 7162498 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697036 S 2026 0 1 "" nsv528873 9 7153530 7167936 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705553 S 2026 0 1 "" dgv2279e1 9 7165387 7472982 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv6708,esv540 M 271 0 0 "" NA18608 nsv519922 9 7193306 7202446 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697128 S 2026 0 1 "" dgv476n21 9 7217918 7223161 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv526674,nsv520185 M 2026 0 3 "" dgv256e55 9 7250390 7380841 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv34220,esv2752310 M 771 0 2 "" BEC_667,NA18608 essv6937 9 7260158 7363868 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18608 nsv510179 9 7263743 7269743 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618307,nssv622172,nssv624076 M 4 0 3 "" CHM,NA10860,NA18994 nsv818680 9 7278704 7361646 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417298 S 112 0 1 "" NA18608 esv34566 9 7281742 7771370 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6980359,essv6980360,essv6980361,essv6980362,essv6987771,essv6987772 M 771 0 1 "" NA07345 nsv818681 9 7282836 7771365 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418011 S 112 0 1 "" NA07345 nsv8410 9 7324684 7328121 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21810 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19221 nsv466118 9 7326443 7353648 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541749 S 1557 0 1 "" 1780854491_A nsv8411 9 7410218 7440456 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19542,nssv17898 M 31 1 1 Samples from several populations that are part of the HapMap project. "" NA18502,NA18564 nsv831502 9 7418505 7589941 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447550 S 95 1 0 "" nsv522302 9 7468453 7479047 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695083 S 2026 0 1 "" nsv526451 9 7475343 7479047 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702754 S 2026 0 1 "" dgv2280e1 9 7514075 7551271 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv8520,esv930,essv16387 M 271 0 0 "" NA18523,NA19172 essv8041 9 7524111 7529567 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19103 essv9500 9 7524111 7537216 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18521 essv12077 9 7525580 7550779 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19099 nsv8412 9 7532679 7534390 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17886 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA10863 nsv6471 9 7606358 7638836 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10653 S 9 1 0 "" NA18956 nsv6472 9 7720851 7733520 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1780 S 9 1 0 "" NA18555 nsv466120 9 7724250 7760942 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541750 S 1557 0 1 "" 1780862081_A nsv519687 9 7724250 7760942 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv657572,nssv688145 M 2026 0 2 "" nsv509294 9 7730110 7735877 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618074,nssv620919 M 4 2 0 "" CHM,NA15510 nsv517976 9 7779577 7780940 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695388 S 2026 0 1 "" nsv8414 9 7817373 8501613 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16642 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18942 nsv466121 9 7846992 7879991 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541751 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01032 nsv521550 9 7903952 7909153 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698165 S 2026 0 1 "" nsv6473 9 7906627 7938409 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10654 S 9 1 0 "" NA18956 nsv516864 9 7931682 7935146 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv654534,nssv654617 M 2026 0 2 "" nsv519428 9 7987936 8029781 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv656956,nssv673151,nssv656685,nssv677417,nssv684516,nssv679180,nssv681110,nssv656155,nssv688980,nssv695847,nssv672840 M 2026 0 11 "" nsv466122 9 7999428 8002166 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541752 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00693 nsv818682 9 7999428 8004674 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417191 S 112 0 1 "" NA18558 nsv415784 9 8077348 8085433 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434362 M 24 "" nsv523627 9 8096282 8151572 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699425 S 2026 1 0 "" nsv416210 9 8209580 8209580 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434788 M 24 "" nsv466123 9 8237628 8260248 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541753 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01310 nsv523768 9 8329606 8332540 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699589 S 2026 0 1 "" nsv526971 9 8372720 8378220 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703343 S 2026 0 1 "" nsv527205 9 8442899 8442953 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703605 S 2026 0 1 "" nsv831504 9 8486277 8655773 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447552 S 95 0 1 "" nsv528895 9 8506003 8506194 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705579 S 2026 0 1 "" nsv528345 9 8528919 8544938 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704928 S 2026 0 1 "" nsv442133 9 8605659 8610138 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv6474 9 8696602 8741414 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8584 S 9 0 1 "" NA12156 nsv466124 9 8777733 8790078 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541754 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01298 nsv524721 9 8787533 8788347 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700706 S 2026 0 1 "" nsv528774 9 8837233 8837353 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705438 S 2026 0 1 "" nsv525293 9 8837233 8840071 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701399 S 2026 0 1 "" nsv522121 9 8855925 8860553 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694893 S 2026 0 1 "" nsv415985 9 8924464 8924533 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434563 M 24 "" nsv466128 9 8965175 8983618 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541756 S 1557 0 1 "" NINDS_142 nsv509295 9 8977794 9001331 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623555,nssv619548,nssv620920 M 4 3 0 "" NA10860,NA15510,NA18994 nsv6475 9 8985678 9004305 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3705,nssv5148 M 9 2 0 "" NA12878,NA19129 nsv519716 9 9010223 9012205 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697009 S 2026 0 1 "" nsv831505 9 9062216 9267320 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447553 S 95 1 0 "" nsv517639 9 9109229 9109349 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv652645,nssv689782,nssv680444,nssv671734,nssv674449,nssv660813,nssv672063,nssv683637,nssv666173 M 2026 0 9 "" nsv518679 9 9109327 9115205 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696128 S 2026 0 1 "" nsv519001 9 9182961 9187298 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696470 S 2026 0 1 "" nsv520273 9 9185240 9187298 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv682584,nssv662289,nssv681885 M 2026 0 3 "" nsv466129 9 9254932 9287697 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541757 S 1557 0 1 "" 1780862358_A nsv818683 9 9316805 9320772 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417749 S 112 1 0 "" NA12234 nsv520832 9 9316805 9354637 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697640 S 2026 0 1 "" nsv524993 9 9317159 9320772 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701022 S 2026 1 0 "" nsv466130 9 9375640 9389018 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541758 S 1557 0 1 "" NINDS_27 nsv6477 9 9385052 9418901 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8585 S 9 1 0 "" NA12156 nsv528425 9 9427674 9546992 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705018 S 2026 0 1 "" dgv477n21 9 9492055 9496433 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv523352,nsv522761 M 2026 0 2 "" nsv466131 9 9506348 9530141 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541759 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00099 esv2422381 9 9637540 9877820 CNV Deletion Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161428 S 181 0 1 "" ND04152 nsv527763 9 9677742 9690448 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704250 S 2026 0 1 "" nsv526471 9 9708066 9822245 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702775 S 2026 0 1 "" dgv2281e1 9 9786608 9804116 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv25178,esv954,essv21096 M 271 0 0 "" NA10854,NA11840 nsv437081 9 9788410 9814156 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv466962 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA10854 nsv518851 9 9788666 9809028 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696304 S 2026 0 1 "" nsv438091 9 9791153 9794313 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470064,nssv470061,nssv470062,nssv470065 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA10854,NA11840 nsv466144 9 9793954 9850735 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541761 S 1557 0 1 "" 1780862088_A nsv507503 9 9801201 9807201 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620443,nssv621937,nssv623065 M 4 3 0 "" NA10860,NA15510,NA18994 nsv466145 9 9806955 9845408 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541762 S 1557 0 1 "" 1780862459_A nsv466147 9 9849571 9952204 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541763 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00782 esv2752311 9 9850870 9875640 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6983130,essv6989736 M 771 0 1 "" BEC_544 nsv528854 9 9872950 9927753 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705533 S 2026 0 1 "" nsv524955 9 9880747 9883002 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700976 S 2026 0 1 "" nsv466148 9 9895178 9952381 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541764 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00726 nsv519026 9 9914724 9916888 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696495 S 2026 0 1 "" nsv466150 9 9935648 9960203 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541766 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00612 nsv416942 9 9940429 9940758 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv435520 M 24 "" dgv915n27 9 9947866 9960203 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv466151,nsv466152 M 1557 0 2 "" HGDP00641,HGDP00688 dgv478n21 9 9947866 10001571 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv526124,nsv525613 M 2026 0 2 "" nsv466153 9 9952204 9961050 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541769 S 1557 0 1 "" 1780862358_A dgv2282e1 9 9952603 9964221 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv5422,esv1195 M 271 0 0 "" NA18542 nsv818684 9 9958038 9961050 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417144 S 112 0 1 "" NA18542 nsv466155 9 9979765 10081133 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541770 S 1557 1 0 "" NINDS_251 nsv831506 9 10030172 10194609 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447554 S 95 1 0 "" nsv466156 9 10071387 10105338 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541771 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01238 nsv510180 9 10087332 10093332 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621351 S 4 0 1 "" NA15510 nsv466157 9 10109504 10160101 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541772 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00009 nsv507504 9 10123429 10129429 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617787 S 4 1 0 "" CHM nsv466158 9 10162573 10267602 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541773 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01283 nsv416572 9 10171969 10172259 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv435150 M 24 "" dgv2283e1 9 10178450 10360398 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv417,essv17829 M 271 0 0 "" NA10831 nsv416854 9 10192700 10200812 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv435432 M 24 "" nsv516073 9 10304941 10323382 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv673957,nssv702008,nssv700436,nssv697773,nssv666038,nssv657756,nssv656374,nssv671535,nssv684725 M 2026 6 3 "" nsv466159 9 10332841 10361281 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541774 S 1557 0 1 "" 1780862001_A nsv466161 9 10355060 10547349 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541776 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01332 nsv466162 9 10359161 10396755 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541777 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01329 nsv6478 9 10372390 10416916 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4617 S 9 0 1 "" NA19129 nsv415375 9 10394562 10395091 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv433953 M 24 "" nsv831507 9 10429463 10666779 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447555 S 95 0 1 "" nsv466163 9 10453098 10495161 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541778 S 1557 1 0 "" NINDS_149 nsv526611 9 10453098 10495161 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702931 S 2026 1 0 "" nsv521326 9 10458666 10474849 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697932 S 2026 0 1 "" nsv466164 9 10480752 10513720 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541779 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00197 nsv415727 9 10488741 10489050 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434305 M 24 "" esv34558 9 10502307 10571500 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6978879,essv6988064 M 771 0 1 "" NA12752 dgv2284e1 9 10502307 10576527 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1256,essv20712 M 271 0 0 "" NA12752 dgv479n21 9 10513334 10514338 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv526560,nsv520437 M 2026 0 2 "" nsv437082 9 10531042 10537886 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv466963 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA12752 nsv442134 9 10531175 10573273 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" essv17415 9 10536257 10576527 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12760 esv34992 9 10536257 10576527 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6988069,essv6978900 M 771 0 1 "" NA12760 dgv916n27 9 10536779 10582492 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv466165,nsv466166 M 1557 0 2 "" HGDP00846,HGDP01009 nsv438092 9 10536814 10572586 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470067,nssv470066 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA12752,NA12760 nsv437083 9 10537886 10548102 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv466964 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA12752 nsv437084 9 10549329 10580179 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv466965 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA12752 nsv466167 9 10555574 10565728 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541782 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00341 nsv831508 9 10574843 10759475 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447556 S 95 1 0 "" dgv2285e1 9 10629445 10670025 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv12104,esv1165 M 271 0 0 "" NA19173 nsv466168 9 10637333 10676548 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541783 S 1557 0 1 "" NINDS_209 nsv516181 9 10651370 10676548 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv693619,nssv678890,nssv666664 M 2026 0 3 "" nsv466169 9 10668556 10686313 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541784 S 1557 0 1 "" 1780862095_A nsv526808 9 10669889 10682461 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703162 S 2026 0 1 "" nsv6479 9 10717435 10746220 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8586 S 9 1 0 "" NA12156 nsv526362 9 10763858 10780580 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702655 S 2026 0 1 "" nsv466170 9 10775491 10846892 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541785 S 1557 0 1 "" 1780862309_A nsv520118 9 10853514 10857032 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv679935,nssv660920 M 2026 0 2 "" dgv917n27 9 11098586 11129558 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv466174,nsv466175 M 1557 0 2 "" HGDP01078,NINDS_241 dgv918n27 9 11101223 11186016 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv466176,nsv466180 M 1557 0 2 "" 1780862432_A,1798860084_A nsv466177 9 11107514 11145468 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541792 S 1557 0 1 "" NINDS_115 nsv466178 9 11119139 11145468 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541793 S 1557 1 0 "" 1780854339_A nsv466179 9 11119139 11149953 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541794 S 1557 0 1 "" NINDS_127 nsv508535 9 11137628 11157669 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620020 S 4 0 1 "" NA15510 nsv523016 9 11140966 11145468 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698692 S 2026 0 1 "" nsv466181 9 11140966 11181795 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541796 S 1557 0 1 "" 1798860567_A nsv516342 9 11145468 11149953 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv667700,nssv662616,nssv700092,nssv670727 M 2026 0 4 "" nsv8415 9 11163118 11621933 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16535 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA10847 nsv466182 9 11177028 11225126 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541797 S 1557 1 0 "" NINDS_228 nsv519566 9 11186016 11208170 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696924 S 2026 0 1 "" nsv433499 9 11200214 11212778 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463380 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA18956 esv2752275 9 11214627 11573747 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6989247,essv6981532,essv6981531,essv6981533,essv6987979,essv6987978 M 771 0 1 "" BEC_293 esv2752276 9 11214627 11948106 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6980664,essv6987830,essv6980662,essv6980663 M 771 0 1 "" BEC_101 nsv507505 9 11221192 11227192 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620444,nssv623066,nssv617788 M 4 3 0 "" CHM,NA15510,NA18994 nsv520912 9 11244070 11298992 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697684 S 2026 1 0 "" nsv466183 9 11295052 11551438 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541798 S 1557 0 1 "" 1780854455_A nsv433257 9 11349656 11408394 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463138 S 9 0 1 "" NA15510 nsv6480 9 11409939 11444220 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2803 S 9 1 0 "" NA18555 nsv466185 9 11430880 11551385 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541800 S 1557 0 1 "" NINDS_192 nsv466186 9 11443474 11635495 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541801 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00608 esv2422486 9 11502989 11665590 CNV Deletion Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161480 S 181 0 1 "" ND01701 nsv415625 9 11516325 11519374 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434203 M 24 "" esv2752278 9 11590500 11691727 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6982683,essv6982682 M 771 0 1 "" BEC_579 nsv517037 9 11609839 11715843 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv653654,nssv693392,nssv682307,nssv657779,nssv686436,nssv702992,nssv683357,nssv654634 M 2026 0 8 "" nsv466187 9 11609839 11786468 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541802 S 1557 0 1 "" 1798860336_A nsv818685 9 11631257 11650080 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417233 S 112 1 0 "" NA18576 nsv466188 9 11635495 11706862 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541803 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00460 esv35053 9 11635592 11701800 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6979288,essv6988143 M 771 0 1 "" NA18523 dgv2286e1 9 11637401 11701989 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv8521,esv897 M 271 0 0 "" NA18523 nsv510181 9 11672518 11678518 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621352 S 4 0 1 "" NA15510 nsv8416 9 11681456 11685070 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18268 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19144 nsv831509 9 11692977 11877425 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447557 S 95 0 1 "" nsv517379 9 11735912 12371912 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv678657,nssv682615,nssv700144,nssv693925,nssv666862,nssv662339,nssv679851,nssv674695,nssv651858,nssv702511,nssv695452,nssv692043,nssv658038,nssv683549,nssv658467,nssv659971,nssv677292,nssv702331,nssv671139,nssv681205,nssv687539,nssv662262,nssv671801,nssv659490,nssv694465,nssv700369,nssv697096,nssv654457,nssv700104,nssv668572,nssv676650,nssv657287,nssv702303,nssv658702,nssv667485,nssv666915,nssv678366,nssv684289,nssv700329,nssv670445,nssv693538,nssv696996,nssv688276,nssv678878,nssv677436,nssv686589,nssv683660,nssv657909,nssv705071,nssv673886,nssv681988,nssv656684,nssv671863,nssv702876,nssv674152,nssv702980,nssv704209,nssv681987,nssv663533,nssv699252,nssv699853,nssv678207,nssv681453,nssv688827,nssv686245,nssv656718,nssv652440,nssv678834,nssv664937,nssv681680,nssv687309,nssv680027,nssv662522,nssv692461,nssv697419,nssv673216,nssv684607,nssv675981,nssv699829 M 2026 0 79 "" nsv466192 9 11736915 11772345 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541804 S 1557 0 1 "" NINDS_78 dgv2287e1 9 11783343 12187607 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv8006,essv11885,esv751,essv10421,essv13999 M 271 0 0 "" NA19221,NA19222 nsv466194 9 11786032 11895556 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541805 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01296 esv33110 9 11787265 11817757 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101374 S 51 0 1 "" 21805 esv2422478 9 11809951 12002316 CNV Deletion Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161258 S 181 0 1 "" ND00700 nsv831510 9 11825277 11963059 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447558 S 95 0 1 "" dgv919n27 9 11825471 12021101 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv466198,nsv466196 M 1557 0 2 "" 1780862081_A,HGDP00544 dgv257e55 9 11827866 12172800 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv34579,esv34791 M 771 0 2 "" NA19221,NA19222 nsv8417 9 11859288 12175635 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21840 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19221 esv32883 9 11861762 11959728 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100080 S 51 0 1 "" 22086 nsv466199 9 11864502 11893938 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541809 S 1557 0 1 "" NINDS_142 nsv466200 9 11869832 11986163 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541810 S 1557 0 1 "" 1780862595_A nsv466201 9 11877764 12138057 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541811 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00407 nsv438094 9 11881381 11883047 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470068,nssv470070,nssv470069 M 269 0 3 Samples from several populations that are part of the HapMap project. "" NA18859,NA19221,NA19222 dgv920n27 9 11893938 11955111 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv466204,nsv466202 M 1557 0 2 "" 1780862460_A,HGDP00759 dgv921n27 9 11893938 12102566 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv466203,nsv466214 M 1557 0 2 "" 1780854039_A,HGDP00187 nsv437642 9 11895556 11939893 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467523 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19161 dgv2288e1 9 11895556 12021984 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv8081,essv13383 M 271 0 0 "" NA19159,NA19161 esv34720 9 11895556 12057914 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6980988,essv6980987 M 771 0 1 "" NA19161 essv3936 9 11895556 12081983 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18970 nsv438095 9 11903287 11978036 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470071,nssv470072 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA19159,NA19161 nsv466205 9 11905692 11995070 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541815 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01333 nsv818686 9 11905692 12000374 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416766,nssv1416765 M 112 0 2 "" NA19159,NA19161 nsv466207 9 11920627 11942643 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541817 S 1557 0 1 "" 1780854445_A nsv818687 9 11924556 11942796 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418483,nssv1418484 M 112 0 2 "" NA19193,NA19194 nsv442135 9 11931913 11942799 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv466208 9 11936421 11967968 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541818 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00620 nsv466210 9 11936421 11997658 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541819 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01023 nsv437643 9 11939893 12009425 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467524 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19161 nsv466215 9 11941983 11942796 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541821 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01406 dgv258e55 9 11947750 12129870 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv34686,esv2752279,esv2752280 M 771 0 3 "" BEC_293,NA18970,SPC_87 dgv922n27 9 11948106 11986163 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv466218,nsv466216 M 1557 0 2 "" 1780862393_A,NINDS_174 dgv2289e1 9 11948972 12164755 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1946,essv3953 M 271 0 0 "" NA18959,NA18970 nsv442537 9 11957036 11965492 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv466219 9 11959789 12003711 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541824 S 1557 0 1 "" NINDS_6 dgv923n27 9 11985297 12114410 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv466230,nsv466223,nsv466229,nsv466221,nsv466231,nsv466222,nsv466224,nsv466226 M 1557 0 8 "" 1780862274_A,HGDP00060,HGDP00338,HGDP00684,HGDP00769,HGDP00955,HGDP00968,NINDS_169 nsv818688 9 11994095 12005741 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417669 S 112 1 0 "" NA18994 essv2107 9 11997006 12107194 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18959 esv34918 9 11997375 12089400 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6980137,essv6980138,essv6987722 M 771 0 1 "" NA18959 dgv924n27 9 12003711 12091436 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv466225,nsv466232,nsv466233,nsv466234 M 1557 0 4 "" HGDP00243,HGDP00251,HGDP00476,HGDP01337 nsv466227 9 12005741 12055319 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541831 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00522 nsv6481 9 12013049 12045458 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10655 S 9 1 0 "" NA18956 dgv925n27 9 12041998 12090880 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv466237,nsv466240,nsv466238 M 1557 0 3 "" HGDP01206,HGDP01229,HGDP01245 nsv466241 9 12085022 12105049 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541843 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00552 dgv926n27 9 12100840 12169991 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv466247,nsv466246,nsv466243 M 1557 0 3 "" 1780854491_A,1798860567_A,HGDP00738 nsv416435 9 12110360 12110360 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv435013 M 24 "" nsv831511 9 12149074 12379058 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447559 S 95 0 1 "" nsv466249 9 12155072 12360104 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541847 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00614 nsv526773 9 12190957 12459893 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703125 S 2026 1 0 "" nsv466252 9 12196873 12332809 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541848 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01250 dgv2290e1 9 12225048 12612041 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv8573,essv10083 M 271 0 0 "" NA19130 esv557 9 12225048 12774092 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent + Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 "" esv34901 9 12273944 12579068 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6980815,essv6980816,essv6980817,essv6987856,essv6987857 M 771 0 1 "" NA19130 nsv831512 9 12279276 12433754 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447560 S 95 0 1 "" nsv466253 9 12323231 12354913 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541849 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01231 nsv466254 9 12369547 12411929 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541850 S 1557 0 1 "" 1780862412_A nsv524238 9 12425710 12489211 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700128 S 2026 0 1 "" esv2422212 9 12438789 13117738 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161537 S 181 1 0 "" ND03071 nsv8418 9 12461413 12480843 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17545,nssv20007,nssv19572,nssv16360 M 31 0 4 Samples from several populations that are part of the HapMap project. "" NA12802,NA18502,NA18980,NA19132 nsv831513 9 12521673 12685747 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447561 S 95 1 0 "" nsv416575 9 12546834 12549646 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv435153 M 24 "" nsv516127 9 12571270 12602897 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694491,nssv666387,nssv704725,nssv676835 M 2026 2 2 "" essv18757 9 12611942 12774092 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12874 nsv466257 9 12661693 12682364 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541851 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00951 nsv524095 9 12662097 12667412 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699969 S 2026 1 0 "" nsv521549 9 12665264 12667412 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698164 S 2026 1 0 "" nsv8419 9 12671187 12677171 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20483,nssv16914 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA18972,NA18975 essv9842 9 12711881 12748881 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19144 nsv8420 9 12715200 12740151 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18298 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19144 nsv818690 9 12716962 12738962 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418171 S 112 0 1 "" NA19144 nsv516527 9 12728690 12738486 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv669026,nssv655544,nssv668891 M 2026 0 3 "" nsv518878 9 12738486 12738633 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696335 S 2026 0 1 "" nsv528532 9 12897902 12900295 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705143 S 2026 0 1 "" nsv466258 9 12918475 12958196 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541852 S 1557 0 1 "" 1780854568_A nsv416305 9 12952792 12952846 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434883 M 24 "" nsv528464 9 13127603 13137764 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705066 S 2026 0 1 "" nsv518837 9 13134078 13137764 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696290 S 2026 0 1 "" esv2752281 9 13274600 13395072 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6989497,essv6985737,essv6985736,essv6990134 M 771 0 1 "" SPC_38 nsv520729 9 13305466 13323297 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv686461,nssv674821 M 2026 0 2 "" nsv831515 9 13323205 13507308 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447563 S 95 0 1 "" nsv527389 9 13370507 13378038 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703824 S 2026 0 1 "" nsv515730 9 13561341 13561933 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv674668,nssv662956,nssv652042,nssv655579,nssv669735,nssv669229,nssv669027,nssv665469,nssv669485,nssv652126,nssv653268,nssv675982,nssv668916,nssv655516,nssv665111,nssv678835,nssv676027 M 2026 0 17 "" nsv526341 9 13599898 13602345 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702633 S 2026 0 1 "" nsv507506 9 13740829 13746829 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621938,nssv623068 M 4 2 0 "" NA10860,NA18994 nsv831516 9 14270695 14427445 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447564 S 95 0 1 "" nsv528796 9 14282720 14283522 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705467 S 2026 0 1 "" dgv480n21 9 14334888 14338563 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv523410,nsv527980 M 2026 0 2 "" nsv526315 9 14337811 14352390 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702599 S 2026 0 1 "" nsv831517 9 14502924 14728206 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447565,nssv1447568,nssv1447567,nssv1447571,nssv1447570,nssv1447569,nssv1447566 M 95 0 7 "" nsv520645 9 14556116 14556406 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv673524,nssv691090 M 2026 0 2 "" nsv521363 9 14556406 14681897 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697973 S 2026 0 1 "" nsv527019 9 14582180 14584501 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703394 S 2026 0 1 "" nsv466260 9 14629666 14652459 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541853 S 1557 0 1 "" NINDS_199 nsv507507 9 14630453 14636453 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623069 S 4 1 0 "" NA18994 nsv526219 9 14647139 14653394 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702483 S 2026 0 1 "" nsv510182 9 14655868 14661868 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621353 S 4 0 1 "" NA15510 nsv6482 9 14663695 14708568 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5149 S 9 0 1 "" NA19129 nsv6483 9 14691613 14721879 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5150 S 9 1 0 "" NA19129 nsv831518 9 14750638 14943501 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447572 S 95 0 1 "" nsv416930 9 14768629 14770431 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv435508 M 24 "" nsv6484 9 14809687 14841742 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5151 S 9 1 0 "" NA19129 nsv521718 9 14856389 14857958 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694091 S 2026 0 1 "" nsv831519 9 15008160 15199127 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447574 S 95 0 1 "" nsv416688 9 15051456 15051456 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv435266 M 24 "" nsv520384 9 15056819 15073613 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697384 S 2026 0 1 "" nsv524381 9 15155032 15192417 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700296 S 2026 1 0 "" nsv521191 9 15208947 15236652 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697836 S 2026 0 1 "" nsv517975 9 15276446 15524070 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695387 S 2026 0 1 "" nsv524849 9 15289590 15352057 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700851 S 2026 0 1 "" nsv831520 9 15394866 15434447 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447575 S 95 0 1 "" nsv527616 9 15564853 15569744 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704082 S 2026 0 1 "" esv2752286 9 15568017 15784897 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6984931,essv6984930,essv6990045 M 771 0 1 "" SPC_194 dgv927n27 9 15605321 15717518 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv466263,nsv466262 M 1557 0 2 "" HGDP01415,NINDS_42 nsv6485 9 15641852 15673001 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10656 S 9 1 0 "" NA18956 esv32957 9 15710059 15727099 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100084 S 51 0 1 "" 22086 nsv528964 9 15750822 15865162 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705661 S 2026 1 0 "" nsv6486 9 15795220 15827639 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv792,nssv3706 M 9 0 2 "" NA12878,NA19240 nsv508536 9 15801619 15824267 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622605,nssv617368 M 4 0 2 "" CHM,NA18994 nsv519593 9 15845317 15851885 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv683720,nssv656990 M 2026 0 2 "" nsv6488 9 15962167 15995792 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8587 S 9 1 0 "" NA12156 nsv831521 9 15964174 16096565 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447576 S 95 0 1 "" nsv525782 9 16051960 16061439 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701958 S 2026 0 1 "" dgv2291e1 9 16053191 16072467 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv952,essv956 M 271 0 0 "" NA18981 nsv442136 9 16061336 16064727 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv6489 9 16175370 16193744 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2804 S 9 1 0 "" NA18555 nsv520183 9 16199181 16201320 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv693124,nssv661461 M 2026 0 2 "" nsv523890 9 16200610 16201712 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699733 S 2026 0 1 "" nsv6490 9 16264423 16298462 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv793 S 9 1 0 "" NA19240 nsv520831 9 16279428 16280269 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv676224,nssv682365 M 2026 0 2 "" nsv466264 9 16349608 16380629 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541857 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00516 dgv261n6 9 16379395 16379743 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv416795,nsv416318 M 24 "" nsv6491 9 16379836 16388649 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8588 S 9 0 1 "" NA12156 nsv524954 9 16422544 16436091 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700975 S 2026 0 1 "" dgv262n6 9 16453295 16453601 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv415383,nsv415605 M 24 "" nsv466265 9 16474731 16506941 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541858 S 1557 0 1 "" 1780854128_A nsv528443 9 16560142 16571967 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705038 S 2026 0 1 "" nsv524264 9 16586071 16601692 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700161 S 2026 1 0 "" dgv2292e1 9 16631966 16799203 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv199,essv23625 M 271 0 0 "" NA12006 nsv510183 9 16702237 16708237 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624077 S 4 0 1 "" NA18994 nsv518608 9 16790341 16794082 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696055 S 2026 0 1 "" nsv8421 9 16889923 16894878 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17928,nssv16672,nssv16886 M 31 0 3 Samples from several populations that are part of the HapMap project. "" NA18564,NA18942,NA19007 nsv466266 9 16893446 16940860 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541859 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01304 dgv2293e1 9 16893850 16908196 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv8669,esv1328 M 271 0 0 "" NA19101 nsv526253 9 16911847 16923037 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702525 S 2026 0 1 "" nsv466267 9 16927552 16972584 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541860 S 1557 0 1 "" 1782681313_A nsv515906 9 16945672 16953863 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv692883,nssv665243 M 2026 0 2 "" nsv466269 9 17155698 17700407 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541861 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00635 nsv466270 9 17226376 17367629 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541862 S 1557 0 1 "" 1780862312_A nsv416983 9 17267063 17267288 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv435561 M 24 "" nsv510184 9 17296332 17302332 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622173 S 4 0 1 "" NA10860 nsv466273 9 17381531 17426662 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541864 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00005 nsv523411 9 17384536 17444799 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699162 S 2026 1 0 "" esv2422265 9 17386711 17588187 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161298 S 181 1 0 "" ND03903 nsv526787 9 17426801 17430278 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703139 S 2026 0 1 "" nsv522698 9 17477945 17478111 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv706109 S 2026 0 1 "" nsv416405 9 17544261 17544261 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434983 M 24 "" nsv517380 9 17554267 17623232 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv651859,nssv672798,nssv675357,nssv692769,nssv701429,nssv692590,nssv666605,nssv656453 M 2026 7 1 "" dgv928n27 9 17573310 17623232 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv466277,nsv466275 M 1557 2 0 "" 1780862003_A,NINDS_200 esv2752287 9 17583258 17622543 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6985926,essv6985927 M 771 1 0 "" SPC_85 nsv466279 9 17689981 17716581 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541867 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00602 nsv510185 9 17727782 17733782 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618308 S 4 0 1 "" CHM nsv8422 9 17800758 17819560 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17958 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18564 dgv2294e1 9 17801584 17818437 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1174,essv4307 M 271 0 0 "" NA18564 nsv6492 9 17826353 17854938 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5152 S 9 1 0 "" NA19129 nsv508538 9 17877411 17910964 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620021,nssv622606 M 4 0 2 "" NA15510,NA18994 dgv35n14 9 17900043 17901466 CNV Loss Cooper et al 2008 18776910 SNP_array nsv433502,nsv433501 M 9 0 2 "" NA15510,NA18956 nsv518330 9 17955723 18007562 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695760 S 2026 0 1 "" esv2752288 9 17955723 18026892 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6982067,essv6982066 M 771 0 1 "" BEC_516 nsv466280 9 18023944 18156112 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541868 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00290 nsv515739 9 18072704 18079614 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv664641,nssv658368,nssv655648 M 2026 0 3 "" nsv6493 9 18099813 18119772 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8589 S 9 1 0 "" NA12156 nsv520180 9 18177403 18183796 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697266 S 2026 0 1 "" nsv831522 9 18221982 18449492 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447577 S 95 0 1 "" nsv525659 9 18278212 18999041 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701814 S 2026 1 0 "" nsv525743 9 18302578 18349014 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701909 S 2026 0 1 "" nsv6494 9 18313276 18343982 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10657 S 9 1 0 "" NA18956 nsv518001 9 18373380 18398771 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695413 S 2026 0 1 "" nsv416588 9 18390145 18390145 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv435166 M 24 "" nsv6495 9 18519849 18553942 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2805 S 9 1 0 "" NA18555 nsv509296 9 18530461 18555708 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623556 S 4 1 0 "" NA18994 nsv416839 9 18568658 18569517 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv435417 M 24 "" nsv6496 9 18576934 18599801 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8590 S 9 0 1 "" NA12156 nsv831523 9 18582398 18743451 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447578 S 95 0 1 "" nsv519362 9 18588470 18589029 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696811 S 2026 0 1 "" nsv415467 9 18741827 18742116 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434045 M 24 "" nsv525887 9 18768319 18781355 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702089 S 2026 0 1 "" nsv466282 9 18910357 18950393 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541869 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01414 nsv519384 9 18914136 18921061 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv689027,nssv655768 M 2026 0 2 "" nsv510186 9 18917876 18923876 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622174,nssv618309,nssv621355,nssv624078 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv526254 9 18921061 18924303 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702526 S 2026 0 1 "" nsv510187 9 19012309 19018309 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618310 S 4 0 1 "" CHM nsv519909 9 19017880 19023376 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv659447,nssv663408 M 2026 0 2 "" nsv8423 9 19115975 19118690 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17853,nssv16390,nssv17475,nssv20714 M 31 4 0 Samples from several populations that are part of the HapMap project. "" NA07048,NA12802,NA18517,NA18537 dgv2295e1 9 19116476 19151145 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1219,essv515 M 271 0 0 "" NA18952 nsv466285 9 19123732 19163783 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541872 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00319 nsv818691 9 19134191 19146784 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417421 S 112 0 1 "" NA18952 nsv526715 9 19135435 19199546 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703055 S 2026 0 1 "" nsv524062 9 19146784 19163783 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699928 S 2026 0 1 "" nsv466286 9 19271099 19506863 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541873 S 1557 1 0 "" 1780854295_A nsv416048 9 19418024 19418078 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434626 M 24 "" nsv524474 9 19420331 19573437 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700412 S 2026 1 0 "" nsv831524 9 19430354 19612084 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447580,nssv1447579 M 95 1 1 "" nsv415862 9 19537518 19538285 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434440 M 24 "" nsv507508 9 19657929 19663929 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620445,nssv621939,nssv623070 M 4 3 0 "" NA10860,NA15510,NA18994 nsv466288 9 19791918 19859438 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541874 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00972 dgv481n21 9 19858092 20011047 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv523164,nsv524659 M 2026 2 0 "" nsv466289 9 19904829 19933585 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541875 S 1557 0 1 "" NINDS_125 nsv437644 9 19930143 19933585 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467525 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18506 esv33124 9 19959839 19960262 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98654 S 51 0 1 "" 21606 nsv6497 9 20030399 20075273 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8591 S 9 0 1 "" NA12156 nsv526645 9 20073046 20087230 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702971 S 2026 0 1 "" nsv528196 9 20271246 20272519 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704755 S 2026 0 1 "" nsv521193 9 20321681 20327131 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv689693,nssv684291,nssv686213 M 2026 0 3 "" nsv466290 9 20498503 20538238 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541876 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00806 nsv521488 9 20621633 20639911 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698099 S 2026 0 1 "" dgv2296e1 9 20746547 20753840 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1564,esv1240 M 271 0 0 "" NA18997 nsv510188 9 20749928 20755928 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624079,nssv618311 M 4 0 2 "" CHM,NA18994 nsv437645 9 20752473 20756254 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467526 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19194 nsv516765 9 20791595 20793597 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv670701,nssv690584 M 2026 0 2 "" nsv442137 9 20791650 20794674 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv524000 9 20801421 20807348 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699860 S 2026 0 1 "" nsv466291 9 20807348 20887266 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541877 S 1557 0 1 "" NINDS_145 nsv6499 9 20817623 20849652 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6265 S 9 1 0 "" NA12156 nsv466292 9 20822095 20922868 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541878 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01021 nsv507509 9 20833045 20839045 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623071,nssv620446,nssv617789 M 4 3 0 "" CHM,NA15510,NA18994 nsv527232 9 20866513 20873241 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703632 S 2026 0 1 "" nsv523258 9 20887266 20892081 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698990 S 2026 0 1 "" nsv524984 9 20950170 20953374 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701013 S 2026 0 1 "" nsv518943 9 20950170 20978666 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696410 S 2026 0 1 "" nsv466294 9 21027771 21072814 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541879 S 1557 0 1 "" 1798860565_A nsv466296 9 21112681 21120177 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541881 S 1557 0 1 "" 1782681262_A dgv2297e1 9 21171454 21186515 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1087,essv6086 M 271 0 0 "" NA18621 nsv438096 9 21180827 21189680 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470073 S 269 0 1 Samples from several populations that are part of the HapMap project. "" NA19131 nsv516132 9 21181463 21196427 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv675288,nssv671884,nssv657402,nssv681239,nssv662974,nssv688805,nssv681632,nssv687311,nssv666408,nssv660703,nssv671732,nssv659408,nssv677116,nssv662871,nssv660007,nssv693713,nssv691662,nssv690488 M 2026 0 18 "" nsv8425 9 21185026 21196846 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20037,nssv17434 M 31 1 1 Samples from several populations that are part of the HapMap project. "" NA10839,NA19132 dgv2298e1 9 21271544 21293689 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1226,essv8697,essv13495 M 271 0 0 "" NA18912,NA18914 nsv438097 9 21275389 21296318 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470080,nssv470077,nssv470081,nssv470082,nssv470078,nssv470079,nssv470076 M 269 0 3 Samples from several populations that are part of the HapMap project. "" NA18912,NA18914,NA19208 esv2752289 9 21351957 21489624 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6988542,essv6986186 M 771 1 0 "" BEC_451 nsv466297 9 21381698 21497589 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541882 S 1557 1 0 "" 1780854081_A nsv525510 9 21471556 21474695 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701643 S 2026 1 0 "" dgv2299e1 9 21489624 21516526 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1339,essv6800 M 271 0 0 "" NA18594 nsv6500 9 21624401 21653726 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8593 S 9 0 1 "" NA12156 nsv510189 9 21706999 21712999 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618312 S 4 0 1 "" CHM nsv416172 9 21728962 21728962 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434750 M 24 "" nsv8426 9 21753810 22166200 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19602 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18502 esv33626 9 21817421 21818357 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99542 S 51 0 1 "" 22335 nsv416308 9 22047961 22048037 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434886 M 24 "" nsv6501 9 22444234 22477340 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8594 S 9 1 0 "" NA12156 nsv416673 9 22454892 22458766 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv435251 M 24 "" nsv510949 9 22476315 22515291 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621610,nssv618601 M 4 0 0 "" CHM,NA15510 nsv6502 9 22477566 22508348 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6266,nssv3707 M 9 0 2 "" NA12156,NA12878 esv33878 9 22486611 22492632 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98769,essv97603,essv100760,essv100995,essv98196,essv94134,essv101276,essv96950,essv95609,essv94529,essv92992,essv96207,essv98540,essv92651,essv99545 M 51 7 8 "" 21606,21616,21656,21693,21772,21802,21805,21817,21841,21932,21939,22007,22085,22233,22335 nsv433503 9 22486640 22492851 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463384 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA12878 nsv466298 9 22503927 22552121 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541883 S 1557 0 1 "" 1780862599_A nsv416956 9 22534001 22537731 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv435534 M 24 "" nsv519091 9 22596575 22645723 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696564 S 2026 0 1 "" esv34240 9 22618700 22685593 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6988160,essv6979359 M 771 0 1 "" NA18532 dgv2300e1 9 22618931 22686345 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv7520,esv967 M 271 0 0 "" NA18532 nsv8427 9 22658170 22661247 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20031 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18860 nsv525354 9 22907331 22915116 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701473 S 2026 0 1 "" nsv525901 9 22935119 22939246 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702105 S 2026 0 1 "" nsv528983 9 22937998 22939246 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705682 S 2026 0 1 "" nsv415372 9 22989504 22989835 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv433950 M 24 "" nsv433258 9 22998119 23056126 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463139 S 9 0 1 "" NA15510 nsv521195 9 23063969 23107288 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700519,nssv692503,nssv684328,nssv691411,nssv705327,nssv693990 M 2026 3 3 "" nsv515509 9 23117310 23120500 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv691256,nssv653379,nssv688510,nssv687760 M 2026 0 4 "" nsv525257 9 23144239 23151189 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701356 S 2026 1 0 "" dgv482n21 9 23144239 23153808 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv527457,nsv528435 M 2026 0 2 "" dgv929n27 9 23161516 23176453 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv466300,nsv466301 M 1557 0 2 "" 1782681169_A,HGDP00019 nsv6503 9 23189511 23218543 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3708 S 9 1 0 "" NA12878 nsv415586 9 23235291 23235291 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434164 M 24 "" nsv508539 9 23330135 23365839 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622607,nssv620022 M 4 0 2 "" NA15510,NA18994 nsv510580 9 23330135 23390731 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618602 S 4 0 0 "" CHM nsv6504 9 23337187 23395339 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9760,nssv3709,nssv6267 M 9 0 3 "" NA12156,NA12878,NA18507 nsv433504 9 23352799 23361855 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463385 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA18956 nsv442539 9 23353115 23363484 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" esv32535 9 23353147 23368121 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98739,essv93849,essv100823,essv101017,essv98140,essv94649,essv101425,essv96991,essv97846,essv95751,essv95597,essv95596,essv93023,essv95293,essv95833,essv94590,essv99108,essv96153,essv97112,essv98591,essv100030,essv98060,essv100188,essv99482,essv98389 M 51 13 10 "" 21606,21634,21656,21693,21772,21791,21805,21817,21837,21841,21863,21872,21911,21932,21938,22007,22075,22085,22086,22259,22286,22335,22352 esv33943 9 23393187 23393415 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100825 S 51 0 1 "" 21656 nsv527740 9 23474919 23476165 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704225 S 2026 0 1 "" nsv524265 9 23507989 23514441 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700162 S 2026 0 1 "" nsv6505 9 23548111 23593761 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6268 S 9 0 1 "" NA12156 nsv510190 9 23696853 23702853 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618313 S 4 0 1 "" CHM nsv438098 9 23759754 23765449 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470085,nssv470084,nssv470087,nssv470083 M 269 0 4 Samples from several populations that are part of the HapMap project. "" NA06994,NA07029,NA19144,NA19145 nsv831526 9 23857998 24032423 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447581 S 95 1 0 "" nsv831527 9 24026609 24194882 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447583,nssv1447582 M 95 1 1 "" esv2752290 9 24121800 24534900 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6981634,essv6988430,essv6985622,essv6981635 M 771 1 0 "" BEC_309 nsv515741 9 24136203 24136436 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv661529,nssv690299,nssv673461,nssv656181,nssv673013,nssv684113,nssv682647,nssv676724,nssv655272,nssv693023,nssv679346,nssv672544,nssv659259,nssv690668,nssv675358,nssv688498,nssv658863,nssv678546,nssv652053,nssv652270 M 2026 0 20 "" nsv523633 9 24136203 24142518 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699433 S 2026 0 1 "" nsv519880 9 24142518 24144680 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697102 S 2026 0 1 "" nsv831528 9 24157266 24340892 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447585 S 95 0 1 "" nsv466303 9 24195004 24325841 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541886 S 1557 0 1 "" 1782681169_A nsv522253 9 24322121 24325841 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695033 S 2026 0 1 "" nsv526799 9 24322121 24375357 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703153 S 2026 0 1 "" nsv438099 9 24457698 24484302 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470088 S 269 0 1 Samples from several populations that are part of the HapMap project. "" NA11881 nsv527099 9 24457698 24485241 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703478 S 2026 1 0 "" nsv818692 9 24457698 24485241 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418087 S 112 1 0 "" NA11881 dgv2301e1 9 24457996 24518103 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv24177,esv983 M 271 0 0 "" NA12751 nsv6506 9 24480866 24506126 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9761 S 9 0 1 "" NA18507 nsv415427 9 24482759 24484792 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434005 M 24 "" nsv831529 9 24485736 24625767 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447586 S 95 0 1 "" nsv8428 9 24486510 24489685 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19632 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18502 nsv442138 9 24487680 24498238 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv8429 9 24492034 24509135 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17916 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA10863 nsv466305 9 24595821 24641946 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541887 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01414 nsv510942 9 24941981 24972166 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621611 S 4 0 0 "" NA15510 nsv6507 9 24968823 24993607 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv794,nssv8595 M 9 2 0 "" NA12156,NA19240 nsv509297 9 24969317 24972166 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623557,nssv619549 M 4 2 0 "" NA10860,NA18994 nsv509298 9 24978698 24978698 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618075 S 4 1 0 "" CHM nsv466307 9 25017430 25109899 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541889 S 1557 0 1 "" 1780854576_A nsv415349 9 25089791 25089876 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv433927 M 24 "" dgv32e196 9 25108499 25204172 CNV Deletion Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array esv2422367,esv2422340 M 181 0 2 "" ND00745,ND04404 dgv2302e1 9 25211244 25374959 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1372,essv21950 M 271 0 0 "" NA07000 nsv466310 9 25253760 25284701 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541890 S 1557 0 1 "" 1780862599_A nsv519409 9 25253760 25342327 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv678343,nssv658958,nssv691663,nssv671505,nssv695833,nssv656046,nssv657945 M 2026 1 6 "" nsv818693 9 25253760 25342327 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417046 S 112 0 1 "" NA07000 nsv466311 9 25253918 25342327 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541891 S 1557 0 1 "" NINDS_22 nsv466313 9 25265811 25288264 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541892 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01065 nsv415887 9 25276010 25276173 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434465 M 24 "" nsv522942 9 25488831 25490238 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698607 S 2026 0 1 "" dgv930n27 9 25552454 25589995 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv466316,nsv466319,nsv466318 M 1557 0 3 "" HGDP00267,NINDS_156,NINDS_213 nsv831530 9 25553811 25744022 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447587 S 95 1 0 "" nsv416591 9 25584088 25584448 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv435169 M 24 "" nsv466320 9 25600272 25633333 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541897 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00647 nsv521564 9 25649613 25656291 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698181 S 2026 0 1 "" nsv416965 9 25766954 25767024 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv435543 M 24 "" nsv415941 9 25776578 25776578 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434519 M 24 "" esv2422440 9 25840788 25978298 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161380 S 181 1 0 "" ND01684 nsv466322 9 25894637 25924932 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541898 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00925 nsv516906 9 25903301 25909851 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv681240,nssv680221,nssv681494,nssv654856 M 2026 0 4 "" nsv466323 9 25909851 25961497 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541899 S 1557 0 1 "" 1780862001_A nsv519537 9 25914754 25919109 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696907 S 2026 1 0 "" nsv522142 9 25914754 25924932 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694915 S 2026 0 1 "" nsv466324 9 25995487 26102748 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541900 S 1557 1 0 "" NINDS_79 nsv526445 9 26229410 26238035 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702748 S 2026 0 1 "" esv2752291 9 26255534 26385883 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6983945,essv6983946 M 771 0 1 "" BEC_736 nsv518193 9 26265964 26292964 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695617 S 2026 0 1 "" nsv466329 9 26292903 26312639 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541902 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00674 nsv831531 9 26324440 26465736 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447590,nssv1447600,nssv1447598,nssv1447592,nssv1447597,nssv1447599,nssv1447604,nssv1447601,nssv1447591,nssv1447605,nssv1447603,nssv1447602,nssv1447608,nssv1447596,nssv1447593,nssv1447589,nssv1447594,nssv1447588,nssv1447607,nssv1447609,nssv1447610 M 95 17 4 "" nsv522329 9 26371874 26381495 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694156 S 2026 0 1 "" nsv528542 9 26499378 26505052 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705154 S 2026 0 1 "" nsv520604 9 26536080 26541726 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697514 S 2026 0 1 "" nsv442139 9 26557699 26562239 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv522727 9 26557999 26562236 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698359 S 2026 0 1 "" nsv818694 9 26557999 26562236 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417760,nssv1417769 M 112 0 2 "" NA10863,NA12234 nsv6508 9 26592437 26637117 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8596 S 9 0 1 "" NA12156 nsv6510 9 26597669 26631966 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv795 S 9 1 0 "" NA19240 dgv931n27 9 26631557 26681668 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv466331,nsv466330 M 1557 0 2 "" HGDP01330,HGDP01336 nsv528085 9 26649562 26656571 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704621 S 2026 0 1 "" dgv932n27 9 26699294 26779975 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv466333,nsv466332 M 1557 0 2 "" 1780862459_A,HGDP00106 nsv442140 9 26703320 26708477 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv6511 9 26742486 26775973 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2806 S 9 1 0 "" NA18555 nsv416604 9 26804396 26804478 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv435182 M 24 "" nsv528614 9 26883662 27064233 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705242 S 2026 1 0 "" nsv517269 9 26935976 27127242 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv654170,nssv681883,nssv670112,nssv682582 M 2026 4 0 "" nsv466334 9 27018947 27088940 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541907 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00573 nsv6512 9 27145677 27190455 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8597 S 9 0 1 "" NA12156 nsv466336 9 27186119 27282703 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541908 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01418 nsv466337 9 27240868 27343460 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541909 S 1557 0 1 "" 1780862529_A nsv525488 9 27271151 27273020 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701617 S 2026 0 1 "" nsv831532 9 27559115 27780167 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447611 S 95 1 0 "" nsv517654 9 27611563 27613558 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv665372,nssv652680,nssv662942,nssv673698,nssv671316,nssv668035,nssv658780 M 2026 0 7 "" nsv507510 9 27720968 27726968 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617790,nssv621940 M 4 2 0 "" CHM,NA10860 dgv933n27 9 27835760 27887124 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv466340,nsv466341 M 1557 2 0 "" HGDP00843,HGDP00846 nsv519211 9 28030264 28033247 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694316 S 2026 0 1 "" nsv521408 9 28032791 28040777 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698018 S 2026 0 1 "" nsv442540 9 28037588 28040691 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv515752 9 28039518 28045603 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv681884,nssv656753,nssv653180,nssv655137,nssv690381,nssv663509,nssv672691,nssv661246,nssv682917,nssv677437,nssv693143,nssv684417,nssv656376,nssv662115,nssv705913,nssv688459,nssv690585,nssv689052,nssv693973,nssv670113,nssv665679,nssv652064,nssv674600,nssv659763,nssv689933,nssv658835,nssv663141,nssv657708,nssv679532,nssv679748,nssv685279,nssv689531,nssv659550,nssv670086,nssv680222,nssv690809,nssv655297,nssv682011,nssv675044,nssv674289,nssv684247,nssv680545,nssv691929,nssv694984,nssv693084,nssv652589,nssv681633,nssv681495,nssv676225,nssv669179,nssv667355,nssv687197,nssv680580,nssv678836,nssv660811,nssv662288,nssv678745,nssv690427,nssv676400,nssv672255,nssv659697,nssv683067,nssv680898,nssv685188,nssv692726,nssv683097 M 2026 0 66 "" nsv515582 9 28083874 28084175 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv663997,nssv685974 M 2026 0 2 "" dgv259e55 9 28156400 28370167 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv2752294,esv2752293,esv2752292 M 771 0 3 "" BEC_451,BEC_628,BEC_704 nsv520823 9 28188623 28332179 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv677648,nssv699392,nssv702610,nssv699955,nssv675995 M 2026 0 5 "" nsv466346 9 28303126 28331935 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541913 S 1557 0 1 "" 1780854293_A nsv526322 9 28427141 28463654 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702611 S 2026 1 0 "" esv2422438 9 28434243 28630263 CNV Deletion Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161482 S 181 0 1 "" ND01757 nsv6513 9 28443763 28489523 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6269 S 9 0 1 "" NA12156 nsv6514 9 28444555 28447652 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10658 S 9 1 0 "" NA18956 nsv442141 9 28454272 28463650 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv2303e1 9 28462018 28840774 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv22968,esv669 M 271 0 0 "" NA07357 nsv523607 9 28506764 28519410 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699401 S 2026 0 1 "" nsv6515 9 28530696 28576037 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6270 S 9 0 1 "" NA12156 nsv466347 9 28532803 28556849 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541914 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00302 nsv523230 9 28534375 28650665 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698953 S 2026 0 1 "" nsv521666 9 28552149 28561014 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698285 S 2026 0 1 "" nsv519569 9 28552149 28591613 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696925 S 2026 1 0 "" dgv263n6 9 28574920 28575027 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv416886,nsv416643 M 24 "" essv20759 9 28577774 28769376 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA07357 esv34239 9 28583600 28756228 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6989171,essv6980381,essv6980380,essv6987779,essv6987778 M 771 0 1 "" NA07357 nsv517027 9 28585171 28751593 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv653229,nssv665423,nssv682078,nssv666863,nssv687540,nssv663595,nssv656344,nssv694218,nssv677348,nssv675011,nssv701173,nssv666533,nssv656295,nssv676462,nssv668466,nssv668710,nssv653639,nssv699467 M 2026 0 18 "" nsv818695 9 28585171 28751593 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418012 S 112 0 1 "" NA07357 dgv934n27 9 28585171 28758411 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv466348,nsv466351 M 1557 0 2 "" 1798860010_A,NINDS_40 nsv466352 9 28599758 28712712 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541917 S 1557 0 1 "" 1780854305_A nsv6516 9 28619167 28653141 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8599 S 9 1 0 "" NA12156 esv2752295 9 28642515 28705838 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6982616,essv6989316,essv6982617 M 771 0 1 "" BEC_570 esv2752296 9 28642515 28751593 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6982242,essv6989595,essv6982241 M 771 0 1 "" BEC_405 nsv466356 9 28695607 28724729 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541918 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00766 nsv519040 9 28700505 28816601 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696509 S 2026 0 1 "" essv18511 9 28705838 28724248 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12763 nsv8430 9 28827815 28839110 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17883,nssv17988,nssv17180,nssv20774,nssv16399,nssv17505,nssv17027,nssv20053 M 31 0 8 Samples from several populations that are part of the HapMap project. "" NA07048,NA18504,NA18517,NA18537,NA18563,NA18564,NA18572,NA18853 nsv415588 9 28837801 28837854 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434166 M 24 "" nsv526640 9 29024430 29117577 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702963 S 2026 0 1 "" nsv831533 9 29028933 29198810 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447612,nssv1447613 M 95 2 0 "" nsv6517 9 29077822 29099196 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv796,nssv1781 M 9 0 2 "" NA18555,NA19240 nsv442541 9 29084549 29087680 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv508540 9 29086927 29095277 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622608,nssv618847 M 4 0 2 "" NA10860,NA18994 dgv2304e1 9 29125948 29299828 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv16310,esv287 M 271 0 0 "" NA19193 nsv8431 9 29127566 29135977 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20067 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19132 nsv517063 9 29152253 31265688 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv659679,nssv653199,nssv701983,nssv699166,nssv695271,nssv671424,nssv693653,nssv670977,nssv689991,nssv687761,nssv658084,nssv689793,nssv700363,nssv683908,nssv657333,nssv652644,nssv703846,nssv660465,nssv687018,nssv684204,nssv654175,nssv703368,nssv655393,nssv677997,nssv660606,nssv670672,nssv653877,nssv672607,nssv689162,nssv663270,nssv679312,nssv672881,nssv670524,nssv687312,nssv686214,nssv704262,nssv693345,nssv655492,nssv693203,nssv666272,nssv653564,nssv690362,nssv654557,nssv685678,nssv663099,nssv696817,nssv671733,nssv697392,nssv689694,nssv667103,nssv685611,nssv653380,nssv669083,nssv674502 M 2026 10 44 "" nsv466359 9 29208907 30133230 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541919 S 1557 1 0 "" 1780854339_A nsv6518 9 29340896 29371516 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5153 S 9 1 0 "" NA19129 nsv831534 9 29354010 29517896 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447616,nssv1447614,nssv1447615 M 95 0 3 "" nsv466360 9 29546577 29581709 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541920 S 1557 0 1 "" NINDS_189 dgv2305e1 9 29784954 30063518 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv599,essv20063 M 271 0 0 "" NA07048 nsv466362 9 29806259 29843258 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541922 S 1557 0 1 "" NINDS_46 nsv8432 9 29849162 29850951 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20061 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18860 nsv510581 9 29855030 29864568 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622390 S 4 0 0 "" NA10860 nsv507511 9 29865749 29871749 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623073 S 4 1 0 "" NA18994 essv19089 9 29874301 30063518 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA07055 nsv437085 9 29911210 29921748 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv466966 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA07048 nsv8433 9 29912912 29993420 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17913 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA07048 nsv438100 9 29914682 29976250 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470091,nssv470093,nssv470089,nssv470090,nssv470092 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA07048,NA07055 dgv2306e1 9 29918566 29999947 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv24117,essv23638 M 271 0 0 "" NA07048,NA07055 dgv260e55 9 29918676 29981403 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv34837,esv35153 M 771 0 2 "" NA07048,NA07055 nsv437086 9 29928824 29979597 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv466967 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA07048 esv2752297 9 29933700 30005536 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6982136,essv6982137 M 771 0 1 "" BEC_522 dgv935n27 9 29935574 29952398 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv466363,nsv466364 M 1557 0 2 "" 1780862042_A,1780862466_A nsv818696 9 29949547 29952701 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415675 S 112 0 1 "" NA10835 dgv936n27 9 29976250 30043820 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv466366,nsv466365 M 1557 0 2 "" 1780862574_A,HGDP00146 nsv466367 9 30077981 30148784 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541927 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01033 esv34879 9 30107312 30388367 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6988338,essv6980968,essv6980967,essv6985450 M 771 1 0 "" NA19154 nsv466368 9 30165446 30262267 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541928 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00971 dgv2307e1 9 30199650 30421507 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv10205,essv11709,esv633 M 271 0 0 "" NA19152,NA19154 esv35141 9 30238450 30452800 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6985445,essv6985444,essv6980949,essv6980948,essv6980947 M 771 1 0 "" NA19152 dgv2308e1 9 30245385 30379493 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv9491,essv12427 M 271 0 0 "" NA19152,NA19154 nsv466369 9 30247784 30368771 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541929 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01265 nsv831535 9 30286191 30435723 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447618 S 95 1 0 "" nsv831538 9 30325017 30485819 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447619 S 95 0 1 "" esv2752298 9 30351738 30651612 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6984188,essv6984187,essv6989928 M 771 0 1 "" BEC_799 nsv8434 9 30369742 30372399 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20127 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19132 esv2752299 9 30388367 30555386 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6983331,essv6983332,essv6989772 M 771 0 1 "" BEC_639 nsv6519 9 30400866 30434956 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8600 S 9 1 0 "" NA12156 dgv264n6 9 30481284 30481609 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv415417,nsv415675 M 24 "" esv2752300 9 30541595 30582305 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6980793,essv6987850,essv6980794 M 771 0 1 "" BEC_158 nsv466371 9 30620020 30644630 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541930 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00183 nsv831539 9 30686205 30839691 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447621,nssv1447620 M 95 2 0 "" dgv2309e1 9 30854032 31028881 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv24299,esv31 M 271 0 0 "" NA10856 nsv8437 9 30914002 30921014 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19662 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18502 nsv415723 9 31058386 31060926 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434301 M 24 "" nsv507512 9 31275902 31281902 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621941 S 4 1 0 "" NA10860 nsv522186 9 31462633 31469005 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694959 S 2026 0 1 "" nsv508541 9 31520964 31539050 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617369 S 4 0 1 "" CHM nsv515810 9 31536488 31551234 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv681990,nssv664841 M 2026 2 0 "" nsv466373 9 31832562 31882857 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541932 S 1557 0 1 "" 1780854449_A nsv520931 9 31858612 31862062 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv677909,nssv687555 M 2026 0 2 "" nsv525783 9 31995136 31997381 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701959 S 2026 0 1 "" nsv510191 9 32004707 32010707 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624080 S 4 0 1 "" NA18994 esv2752305 9 32010350 32128500 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6981059,essv6981060,essv6985462 M 771 1 0 "" BEC_345 esv33080 9 32034918 32055694 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99933 S 51 0 1 "" 22086 nsv527469 9 32050229 32051243 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703912 S 2026 0 1 "" nsv517678 9 32071117 32077232 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv663166,nssv683501,nssv682648,nssv659006,nssv652811 M 2026 5 0 "" dgv2310e1 9 32085083 32107175 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv5847,esv1020 M 271 0 0 "" NA18524 nsv525245 9 32094829 32111137 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701336 S 2026 0 1 "" nsv416994 9 32097359 32097426 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv435572 M 24 "" dgv937n27 9 32100072 32115244 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv466374,nsv466375 M 1557 0 2 "" HGDP01101,HGDP01181 nsv466376 9 32214466 32273644 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541935 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00687 nsv524698 9 32247426 32249801 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700678 S 2026 0 1 "" dgv483n21 9 32294303 32309634 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv525811,nsv522961 M 2026 0 2 "" nsv519222 9 32295020 32295904 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694317 S 2026 0 1 "" nsv415870 9 32305154 32305380 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434448 M 24 "" nsv521047 9 32399046 32399442 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv687683,nssv681029,nssv680687 M 2026 0 3 "" nsv519447 9 32446656 32447558 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv693754,nssv656223 M 2026 0 2 "" nsv831540 9 32499385 32641744 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447622 S 95 1 0 "" nsv442142 9 32706572 32717150 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv518244 9 32707013 32715773 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695674 S 2026 0 1 "" nsv525853 9 32707013 32715773 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702047 S 2026 1 0 "" dgv71n64 9 32707013 32717136 CNV Gain Wang_et_al_2007 17921354 SNP_array nsv818697,nsv818698 M 112 2 0 "" NA18516,NA19143 nsv526161 9 32707013 32729599 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702420 S 2026 1 0 "" dgv938n27 9 32707510 32717136 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv466378,nsv466377 M 1557 0 2 "" HGDP00105,HGDP00462 dgv484n21 9 32738365 32744685 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv525112,nsv515949 M 2026 0 6 "" nsv415690 9 32808846 32808846 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434268 M 24 "" nsv6522 9 32924696 32972357 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3710,nssv8601 M 9 2 0 "" NA12156,NA12878 nsv438101 9 32991449 33014917 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470095,nssv470094 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA07357,NA12057 nsv8438 9 33005136 33019069 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20513 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18972 nsv509299 9 33038935 33163528 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623558 S 4 1 0 "" NA18994 nsv527001 9 33103970 33105556 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703376 S 2026 0 1 "" nsv6523 9 33122727 33139709 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8602 S 9 0 1 "" NA12156 nsv519369 9 33124617 33273161 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv655702,nssv660858 M 2026 2 0 "" nsv416090 9 33242086 33242250 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434668 M 24 "" nsv6524 9 33317243 33327748 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8603 S 9 0 1 "" NA12156 nsv8439 9 33354854 33412602 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17943 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA07048 nsv482129 9 33374949 33392517 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558490 S 1 1 0 "" KB1 nsv415992 9 33413362 33414654 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434570 M 24 "" nsv466380 9 33424931 33443638 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541938 S 1557 0 1 "" 1780854215_A nsv516500 9 33424931 33456859 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv668695,nssv682721 M 2026 0 2 "" nsv518168 9 33455182 33468434 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695589 S 2026 0 1 "" nsv527128 9 33455651 33457595 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703513 S 2026 0 1 "" nsv8440 9 33588656 33601082 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15701 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA12872 nsv8441 9 33607283 33608941 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20157 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19132 nsv471653 9 33607645 33750742 CNV Gain Sharp et al 2005 15918152 BAC_aCGH,FISH Eichler Segmental Duplication BAC array nssv550884,nssv550887,nssv550888,nssv550889,nssv550885,nssv550883,nssv550882,nssv550886 M 48 8 0 "" NA15724,NA15728,NA15729,NA15731,NA15733,NA16689,NA17014,NA17016 nsv507513 9 33622047 33628047 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617791 S 4 1 0 "" CHM nsv8442 9 33646355 33649489 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv15731,nssv20121,nssv16944,nssv17210 M 31 0 4 Samples from several populations that are part of the HapMap project. "" NA12872,NA18853,NA18860,NA18975 nsv518977 9 33665629 33835079 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696445 S 2026 1 0 "" nsv8443 9 33687588 33692108 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19692,nssv18328,nssv20804,nssv20187,nssv17240,nssv21870,nssv20151 M 31 0 7 Samples from several populations that are part of the HapMap project. "" NA18502,NA18517,NA18853,NA18860,NA19132,NA19144,NA19221 nsv8444 9 33782372 33797431 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16974,nssv16916,nssv17536,nssv17535,nssv17575 M 31 0 5 Samples from several populations that are part of the HapMap project. "" NA18537,NA18552,NA18975,NA18980,NA19007 dgv2311e1 9 33794006 33809555 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1064,essv7474 M 271 0 0 "" NA18633 nsv520467 9 33794813 34136645 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv671679,nssv686824 M 2026 2 0 "" nsv831541 9 33879013 34065664 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447623 S 95 0 1 "" nsv6525 9 34037775 34080440 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9920 S 9 0 1 "" NA18507 nsv509300 9 34100034 34208309 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623559 S 4 1 0 "" NA18994 nsv831542 9 34263803 34451545 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447624 S 95 1 0 "" nsv831543 9 34421289 34605381 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447625 S 95 0 1 "" nsv519946 9 34511867 34544999 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694356 S 2026 0 1 "" nsv818699 9 34525209 34675940 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415676 S 112 1 0 "" NA12248 nsv415912 9 34634298 34640279 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434490 M 24 "" nsv831544 9 34640000 34808948 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447626 S 95 1 0 "" nsv509301 9 34693174 34789266 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620921 S 4 1 0 "" NA15510 nsv6526 9 34719794 34735496 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3711 S 9 1 0 "" NA12878 nsv529026 9 34733681 34809531 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705737 S 2026 0 1 "" nsv519332 9 34774168 34809531 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696797 S 2026 1 0 "" nsv517832 9 34781536 34805932 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695236 S 2026 1 0 "" nsv415893 9 34894796 34894796 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434471 M 24 "" nsv6527 9 34974487 35005046 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1782 S 9 1 0 "" NA18555 nsv508542 9 35200283 35258841 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622609 S 4 0 1 "" NA18994 nsv831545 9 35317928 35497319 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447627,nssv1447631,nssv1447630 M 95 0 3 "" nsv527028 9 35547206 35564609 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703403 S 2026 0 1 "" nsv528256 9 35547206 35618739 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704822 S 2026 0 1 "" nsv466385 9 35652251 35695086 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541939 S 1557 0 1 "" NINDS_65 nsv6528 9 35656749 35690669 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3712 S 9 1 0 "" NA12878 nsv416447 9 35793097 35793399 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv435025 M 24 "" nsv831546 9 35816694 36034564 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447632 S 95 0 1 "" esv32581 9 35971122 35971678 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98680,essv101196,essv101071,essv98337,essv94819,essv101288,essv94358,essv95274,essv101776,essv95918,essv99072,essv100431,essv98513 M 51 0 13 "" 21606,21618,21693,21772,21791,21805,21808,21872,21909,21911,21938,22300,22352 esv33339 9 35974360 35978828 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98934 S 51 0 1 "" 21606 nsv519496 9 35981115 35982302 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv691137,nssv656425 M 2026 0 2 "" esv2750744 9 35983984 35986683 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv94687 S 51 1 0 "" 21791 nsv831547 9 35985129 36133758 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447633 S 95 0 1 "" esv32839 9 35989407 35991876 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101222,essv98339 M 51 0 2 "" 21618,21772 nsv416245 9 35998986 35999049 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434823 M 24 "" nsv416223 9 36123038 36123038 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434801 M 24 "" nsv527617 9 36127346 36130115 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704083 S 2026 1 0 "" nsv519442 9 36127346 36133566 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694329 S 2026 0 1 "" nsv528600 9 36127346 36163148 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705226 S 2026 0 1 "" nsv466386 9 36282975 36305900 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541940 S 1557 0 1 "" 1780862484_A nsv524120 9 36300642 36300778 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699998 S 2026 0 1 "" nsv416514 9 36331791 36331842 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv435092 M 24 "" nsv7420 9 36351713 36389833 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6271 S 9 0 0 "" NA12156 esv33302 9 36353014 36353550 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101596,essv101153,essv93827,essv100685,essv100956,essv98139,essv94725,essv101388,essv95372,essv101647,essv95784,essv94508,essv92852,essv93290,essv92626,essv100296,essv96272 M 51 0 17 "" 21603,21618,21634,21656,21693,21772,21791,21805,21872,21909,21911,21932,21939,22170,22233,22300,22371 nsv6529 9 36389225 36396118 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5154 S 9 1 0 "" NA19129 nsv831549 9 36392178 36539166 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447634 S 95 0 1 "" nsv831550 9 36499102 36699458 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447635 S 95 0 1 "" nsv6530 9 36650247 36694971 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8604 S 9 0 1 "" NA12156 nsv6531 9 36822802 36866605 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8605 S 9 0 1 "" NA12156 nsv466387 9 36846268 36875583 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541941 S 1557 0 1 "" NINDS_49 nsv466388 9 36862314 36876065 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541942 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00602 nsv516601 9 36871866 36875450 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv669486,nssv687078 M 2026 0 2 "" nsv438102 9 36872141 36890817 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470098,nssv470096 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA18500,NA19207 nsv466389 9 36891494 36912924 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541943 S 1557 0 1 "" NINDS_173 nsv522345 9 36950765 36951472 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695125 S 2026 0 1 "" nsv416411 9 37042699 37046904 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434989 M 24 "" nsv466390 9 37048135 37279932 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541944 S 1557 0 1 "" 1780854231_A nsv818701 9 37060398 37105196 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416081 S 112 0 1 "" NA12801 nsv6533 9 37070630 37103286 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv798 S 9 1 0 "" NA19240 nsv529027 9 37098497 37343252 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705738 S 2026 0 1 "" nsv520965 9 37105196 37144793 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv681030,nssv678920 M 2026 0 2 "" nsv6534 9 37191741 37201797 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9762 S 9 1 0 "" NA18507 nsv831551 9 37229857 37363678 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447637,nssv1447636 M 95 1 1 "" nsv6535 9 37332670 37365362 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3713 S 9 1 0 "" NA12878 nsv518327 9 37372099 37377218 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695757 S 2026 0 1 "" nsv442144 9 37494703 37504032 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv469813 9 37618197 37767278 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649834 M 265 0 1 Samples from several populations that are part of the HapMap project. "" nsv831552 9 37683649 37849977 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447638 S 95 1 0 "" nsv469814 9 37767283 37940151 CNV Gain Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649835 M 265 2 0 Samples from several populations that are part of the HapMap project. "" esv32947 9 37779026 37779736 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98135 S 51 0 1 "" 21772 dgv485n21 9 37910230 37929673 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv527731,nsv518526 M 2026 0 2 "" nsv519498 9 38099555 38106868 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv656426,nssv682897 M 2026 0 2 "" nsv6536 9 38224688 38264818 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3715,nssv8607 M 9 2 0 "" NA12156,NA12878 nsv8445 9 38273615 38675717 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20543,nssv17566,nssv21900,nssv19722,nssv15791 M 31 1 4 Samples from several populations that are part of the HapMap project. "" NA12872,NA18502,NA18552,NA18972,NA19221 nsv527063 9 38386065 38386502 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703442 S 2026 0 1 "" nsv6537 9 38412795 38446109 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv799 S 9 1 0 "" NA19240 dgv261e55 9 38449763 38673300 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv35073,esv34705 M 771 0 2 "" NA12864,NA12872 nsv6538 9 38461174 38497218 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9763 S 9 0 1 "" NA18507 nsv442145 9 38476211 38488481 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv416101 9 38479356 38488345 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434679 M 24 "" dgv2312e1 9 38493875 38673287 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv19326,essv19811 M 271 0 0 "" NA12864,NA12872 nsv517584 9 38495208 38495602 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv692139,nssv652443,nssv682819,nssv680443,nssv661434,nssv680787,nssv661507,nssv654458 M 2026 0 8 "" nsv517861 9 38495208 38511164 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695265 S 2026 0 1 "" nsv438103 9 38509912 38524245 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470099 S 269 0 1 Samples from several populations that are part of the HapMap project. "" NA12872 dgv2313e1 9 38557168 38736668 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv17723,essv19514 M 271 0 0 "" NA12864,NA12872 dgv2314e1 9 38557168 40388570 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1904,essv2971,essv5595,essv4888,essv23265,essv24725,essv6297,essv6256,essv20904,essv3410,essv22826,essv3534,essv16693,essv15535 M 271 0 0 "" NA07345,NA11829,NA12004,NA12801,NA18505,NA18529,NA18561,NA18609,NA18636,NA18945,NA18965,NA18976,NA18981,NA19142 nsv6539 9 38564430 38598184 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2807 S 9 1 0 "" NA18555 nsv527646 9 38626463 38636995 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704117 S 2026 0 1 "" nsv437087 9 38638775 38642714 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv466968 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA12864 nsv437088 9 38642714 38675643 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv466969 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA12864 nsv519267 9 38700614 38701068 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv655138,nssv691638,nssv684962 M 2026 0 3 "" dgv2315e1 9 38704188 38883075 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv7181,essv4304,essv20995,essv19420,essv1134,essv22352,essv867,essv23789 M 271 0 0 "" NA06985,NA06991,NA11840,NA12763,NA18547,NA18603,NA18964,NA19000 dgv2316e1 9 38704188 39177642 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv14500,essv10397,essv19767,essv22435,essv6672,essv8722,essv12185,essv16763,essv8628,essv23840,essv540,essv22868,essv9920,essv17484,essv24240,essv23380,essv25023,essv16272,essv17794,essv21532,essv17918,essv18740,essv8147,essv20581,essv14970,essv23392,essv381 M 271 0 0 "" NA07022,NA07056,NA10831,NA10835,NA10839,NA10854,NA10856,NA12003,NA12750,NA12760,NA12761,NA12762,NA12873,NA12874,NA18608,NA18870,NA18872,NA18971,NA18998,NA19092,NA19101,NA19145,NA19161,NA19202,NA19206,NA19222,NA19239 dgv2317e1 9 38704188 39638349 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv18381,essv9669 M 271 0 0 "" NA12249,NA18913 dgv2318e1 9 38704188 41639786 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2464,essv12419 M 271 0 0 "" NA18999,NA19238 nsv8446 9 38761896 38954719 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17464,nssv19782,nssv20834,nssv18309,nssv17827,nssv19141,nssv15821,nssv20181,nssv17596,nssv16946,nssv16565,nssv20573,nssv17004,nssv18358,nssv17973,nssv17605,nssv20211,nssv17057,nssv17494,nssv16702,nssv21930,nssv18018,nssv20217,nssv17270,nssv20247 M 31 6 17 Samples from several populations that are part of the HapMap project. "" NA07048,NA10839,NA10847,NA11830,NA12740,NA12872,NA18502,NA18517,NA18552,NA18563,NA18564,NA18853,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19144,NA19221,NA19240 nsv519835 9 38762575 39099101 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697077 S 2026 1 0 "" nsv6540 9 38824747 38868634 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1783,nssv5155 M 9 0 2 "" NA18555,NA19129 nsv821661 9 38826767 40751126 CNV Gain Sebat_et_al_2004 15273396 ROMA Custom Nimblegen photoprint 85000 probe ROMA oligo array nssv1421223,nssv1421227,nssv1421217,nssv1421218,nssv1421219,nssv1421228,nssv1421220,nssv1421225,nssv1421221,nssv1421229,nssv1421226,nssv1421222 M 31 12 0 "" nsv508543 9 38850296 38862264 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617370,nssv618848 M 4 0 2 "" CHM,NA10860 dgv2319e1 9 38859439 41216390 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv3459,essv3746,essv5293,essv20024,essv6777 M 271 0 0 "" NA07048,NA18562,NA18624,NA18961,NA18992 nsv831553 9 38860163 39067744 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447641,nssv1447639,nssv1447642 M 95 2 1 "" nsv442146 9 38906782 40090088 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv507514 9 38929249 38935249 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620447,nssv623074,nssv621942 M 4 3 0 "" NA10860,NA15510,NA18994 nsv8448 9 38973122 38974318 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17034,nssv16732 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA18942,NA18975 dgv2320e1 9 38981975 39177642 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv642,essv21981 M 271 0 0 "" NA11995,NA18975 dgv2321e1 9 38981975 39294206 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv9637,essv10564 M 271 0 0 "" NA19141,NA19240 dgv2322e1 9 38981975 39638349 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2608,essv24261,essv24395,essv23923 M 271 0 0 "" NA10856,NA12707,NA12814,NA18990 dgv2323e1 9 38981975 40388570 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv20782,essv25064,essv5363 M 271 0 0 "" NA12146,NA12892,NA18563 nsv520007 9 38994140 39174065 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv675894,nssv660070,nssv686079,nssv675190,nssv706055,nssv688627 M 2026 3 3 "" nsv818702 9 38994140 39174065 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416173,nssv1416171 M 112 2 0 "" NA12878,NA12892 nsv8449 9 39017085 39049029 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19171,nssv18608,nssv17300,nssv18003,nssv17626 M 31 2 3 Samples from several populations that are part of the HapMap project. "" NA07048,NA12155,NA18552,NA18853,NA19240 nsv8450 9 39052333 39407722 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20603,nssv18418,nssv21960,nssv18388,nssv19812,nssv19842,nssv18033,nssv21990,nssv17857,nssv20241,nssv20277,nssv18638,nssv18048,nssv17117 M 31 4 8 Samples from several populations that are part of the HapMap project. "" NA07048,NA11830,NA12155,NA18502,NA18563,NA18564,NA18860,NA18972,NA19132,NA19144,NA19221 nsv471466 9 39062766 39278300 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548360,nssv548359,nssv548361 M 3 "" nsv831554 9 39073855 39224644 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447645,nssv1447644,nssv1447643 M 95 3 0 "" nsv415608 9 39086068 39086292 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434186 M 24 "" nsv469512 9 39097669 39246164 CNV Gain Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649648 M 265 22 0 Samples from several populations that are part of the HapMap project. "" nsv508544 9 39131672 40618136 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618850,nssv620023,nssv618849 M 4 0 2 "" NA10860,NA15510 nsv831555 9 39149715 39302027 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447646,nssv1447647 M 95 2 0 "" esv32556 9 39167092 40238075 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100151 S 51 0 1 "" 22286 dgv2324e1 9 39175643 39294206 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv9043,essv5938,essv17024,essv15793,essv14546,essv8929,essv19586,essv8638,essv17059,essv16769,essv17787,essv18968,essv9871,essv394 M 271 0 0 "" NA10831,NA12005,NA12864,NA18550,NA18872,NA18971,NA19131,NA19132,NA19144,NA19145,NA19172,NA19200,NA19202,NA19239 nsv469801 9 39190165 39384628 CNV Gain Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649822 M 265 2 0 Samples from several populations that are part of the HapMap project. "" nsv469632 9 39237030 39387764 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649558 M 265 1 1 Samples from several populations that are part of the HapMap project. "" essv367 9 39258647 39435726 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18971 nsv8451 9 39433497 39435676 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16976 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19007 nsv8452 9 39435676 39719001 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19872,nssv20633,nssv18508,nssv18123,nssv19902,nssv22050,nssv18478,nssv20307,nssv17147,nssv17565,nssv20271,nssv17006,nssv22020,nssv18668 M 31 4 8 Samples from several populations that are part of the HapMap project. "" NA07048,NA12155,NA18502,NA18537,NA18563,NA18860,NA18972,NA19007,NA19132,NA19144,NA19221 nsv482130 9 39657015 39663247 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558491 S 1 1 0 "" KB1 nsv8453 9 39744775 39797038 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17036 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19007 nsv8454 9 39746360 40011316 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17595,nssv19201,nssv18389,nssv17330,nssv17656,nssv18698,nssv17207,nssv17064,nssv17946,nssv19932,nssv20864,nssv17124,nssv17066,nssv18568,nssv18153,nssv20663,nssv17237,nssv17625,nssv17177,nssv20337,nssv18538,nssv20693,nssv18359 M 31 9 11 Samples from several populations that are part of the HapMap project. "" NA07048,NA10863,NA12155,NA18502,NA18517,NA18537,NA18552,NA18563,NA18853,NA18972,NA18975,NA19007,NA19132,NA19144,NA19173,NA19240 dgv2325e1 9 40004730 40104563 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv17753,essv16754,essv10401,essv10327 M 271 0 0 "" NA10831,NA18506,NA18872,NA19222 dgv2326e1 9 40004730 40155117 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv24281,essv693,essv19927,essv17070,essv1474,essv17552,essv22450,essv14552 M 271 0 0 "" NA10856,NA12761,NA12762,NA12813,NA18944,NA18975,NA19172,NA19202 dgv2327e1 9 40004730 41282840 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv5196,essv10523,essv18383 M 271 0 0 "" NA12249,NA18611,NA19240 nsv831556 9 40009981 40146305 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447648 S 95 0 1 "" dgv2328e1 9 40012313 40388570 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv4126,essv19191,essv10867 M 271 0 0 "" NA12865,NA18555,NA18871 nsv8455 9 40053762 40086726 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19231 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19240 nsv8456 9 40089166 40491719 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17887,nssv18419,nssv18628,nssv19962,nssv17267,nssv18183,nssv18728,nssv15851,nssv16595,nssv22080,nssv17360,nssv22140,nssv20301,nssv20113,nssv16792,nssv18598,nssv20367,nssv18788,nssv19992 M 31 3 13 Samples from several populations that are part of the HapMap project. "" NA07048,NA10847,NA11830,NA12155,NA12872,NA18502,NA18504,NA18563,NA18853,NA18860,NA18942,NA19132,NA19144,NA19173,NA19221 nsv831557 9 40104681 40326475 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447652,nssv1447650,nssv1447649 M 95 1 2 "" dgv2329e1 9 40205118 40388570 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv9601,essv14553,essv8957,essv4756,essv22545,essv10985,essv9982,essv1736,essv5899,essv9210,essv10151,essv9029,essv19691,essv15738,essv24378,essv8143,essv22053,essv9875,essv6653,essv4265,essv17841,essv2570,essv24288,essv11198,essv19286,essv23330,essv13881,essv14730,essv21184,essv22114,essv11510,essv18590,essv10393,essv23899,essv17039,essv3182,essv17092,essv16816,essv18767,essv19518,essv16427,essv18944,essv8633,essv22225,essv326 M 271 0 0 "" NA07348,NA10831,NA10838,NA10856,NA10857,NA11830,NA12005,NA12044,NA12154,NA12234,NA12264,NA12707,NA12750,NA12814,NA12864,NA12874,NA18550,NA18603,NA18608,NA18620,NA18854,NA18872,NA18971,NA18990,NA18997,NA19012,NA19099,NA19128,NA19130,NA19131,NA19132,NA19139,NA19141,NA19143,NA19144,NA19145,NA19159,NA19172,NA19173,NA19200,NA19202,NA19204,NA19206,NA19222,NA19239 essv9712 9 40205118 40513847 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18913 dgv2330e1 9 40205118 41135908 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv654,essv8247,essv14306,essv5353,essv19937,essv2321,essv412 M 271 0 0 "" NA12813,NA18563,NA18940,NA18971,NA18975,NA19116,NA19194 nsv831558 9 40233156 40391302 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447655,nssv1447654,nssv1447653 M 95 2 1 "" nsv831560 9 40307197 40501551 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447656,nssv1447657 M 95 2 0 "" dgv2331e1 9 40335514 41784440 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv20926,essv23068,essv12246,essv17237 M 271 0 0 "" NA12801,NA12812,NA18503,NA19101 dgv2332e1 9 40335514 42118524 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv15498,essv1898,essv5533,essv7606,essv6342,essv12833 M 271 0 0 "" NA18505,NA18529,NA18545,NA18609,NA18976,NA19120 nsv469605 9 40359014 40502015 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649721 M 265 0 0 Samples from several populations that are part of the HapMap project. "" nsv831561 9 40403376 40598755 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447658 S 95 0 1 "" nsv8457 9 40491324 41479783 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17976,nssv15881,nssv20487,nssv22170,nssv17917,nssv17685,nssv17186,nssv20457,nssv16852,nssv17390,nssv18718,nssv17126,nssv17524,nssv20331,nssv19291,nssv20022,nssv20052,nssv15911,nssv16459,nssv20361,nssv17327,nssv18369,nssv17655,nssv16625,nssv17480,nssv18243,nssv17387,nssv20391,nssv17447,nssv18339,nssv20723,nssv18213,nssv17450,nssv18658,nssv20397,nssv18138,nssv18688,nssv20783,nssv16822,nssv17297,nssv19261,nssv20894,nssv17156,nssv19321,nssv18748,nssv17154,nssv17686,nssv20813,nssv17635,nssv17715,nssv17357 M 31 16 19 Samples from several populations that are part of the HapMap project. "" NA07048,NA10839,NA10847,NA10863,NA11830,NA12740,NA12872,NA18502,NA18517,NA18537,NA18552,NA18563,NA18564,NA18572,NA18853,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19144,NA19221,NA19240 nsv831562 9 40503214 40726866 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447659,nssv1447660,nssv1447663,nssv1447661 M 95 2 2 "" nsv7422 9 40598385 42965048 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3716,nssv800 M 9 0 0 "" NA12878,NA19240 nsv508545 9 40655964 41699407 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618851,nssv620024 M 4 0 2 "" NA10860,NA15510 dgv2333e1 9 40719624 41282840 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv24242,essv568,essv11926 M 271 0 0 "" NA10856,NA18502,NA18998 essv3525 9 40719624 42928370 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18965 nsv831563 9 40793935 41028977 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447664,nssv1447666,nssv1447665 M 95 2 1 "" essv8148 9 40844671 41507122 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19206 dgv2334e1 9 40961066 41282840 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv8801,essv8455,essv16676,essv15406,essv14559,essv15017,essv17102,essv17905,essv10355 M 271 0 0 "" NA12003,NA18506,NA18508,NA18516,NA18870,NA19142,NA19172,NA19202,NA19203 dgv2335e1 9 40961066 41784440 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv3355,essv7351 M 271 0 0 "" NA18570,NA18945 nsv831564 9 41017379 41163886 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447677,nssv1447667,nssv1447668,nssv1447676,nssv1447672,nssv1447669,nssv1447670,nssv1447674,nssv1447671,nssv1447678,nssv1447679,nssv1447675 M 95 0 12 "" dgv2336e1 9 41065891 41282840 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv23518,essv22879,essv20117,essv3160,essv14442,essv21537,essv11898,essv6704,essv9034,essv9932,essv18595,essv19464,essv23373,essv23122,essv8637,essv13421,essv16294,essv15354,essv10373,essv16747,essv22822,essv22449,essv20609,essv17572,essv17748,essv23411,essv9239 M 271 0 0 "" NA06993,NA07056,NA07345,NA10831,NA10854,NA11840,NA12004,NA12234,NA12750,NA12760,NA12761,NA12762,NA12873,NA12891,NA18608,NA18862,NA18872,NA19012,NA19128,NA19132,NA19145,NA19161,NA19192,NA19201,NA19221,NA19222,NA19239 dgv2337e1 9 41194015 41282840 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv276,essv3064,essv21013,essv10870,essv17284,essv20015,essv14714,essv8762,essv24997,essv9794,essv24670 M 271 0 0 "" NA06991,NA07048,NA10839,NA11829,NA18856,NA18863,NA18871,NA18978,NA18981,NA19092,NA19159 dgv2338e1 9 41194015 41639786 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv10094,essv414 M 271 0 0 "" NA18971,NA19130 dgv2339e1 9 41343328 42118524 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv3477,essv5350,essv20028 M 271 0 0 "" NA07048,NA18563,NA18992 nsv831565 9 41374048 41538524 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447680,nssv1447681,nssv1447682,nssv1447683 M 95 3 1 "" essv23921 9 41415897 41784440 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12814 nsv469526 9 41491178 41610697 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649609 M 265 0 0 Samples from several populations that are part of the HapMap project. "" nsv471654 9 41491179 41610697 CNV Loss Sharp et al 2005 15918152 BAC_aCGH,FISH Eichler Segmental Duplication BAC array nssv548848 S 48 0 1 "" NA15732 nsv8459 9 41505565 42216147 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17717,nssv18509,nssv20843,nssv17507,nssv20873,nssv17510,nssv20451,nssv18006,nssv17554,nssv17567,nssv17597,nssv20903,nssv20112,nssv16489,nssv18838,nssv18273,nssv17716,nssv17276,nssv18818,nssv18878,nssv17537,nssv17306,nssv18399,nssv18036,nssv17477,nssv18988,nssv17865,nssv17835,nssv18126,nssv17214,nssv17274,nssv16450,nssv22200,nssv18156,nssv17540,nssv17246,nssv17657,nssv17837,nssv17687,nssv17775,nssv17895,nssv17805,nssv17627,nssv20517,nssv15941,nssv17216,nssv18898,nssv18868,nssv17807,nssv18928,nssv17244,nssv18808,nssv18479,nssv19351,nssv17777,nssv19381,nssv18848,nssv20547,nssv20954,nssv18958,nssv20924,nssv17184 M 31 15 12 Samples from several populations that are part of the HapMap project. "" NA07048,NA10839,NA10863,NA12155,NA12740,NA12802,NA12872,NA18502,NA18517,NA18537,NA18552,NA18563,NA18572,NA18853,NA18860,NA18972,NA18975,NA19007,NA19132,NA19144,NA19173,NA19221,NA19240 nsv442147 9 41517661 41526822 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" essv6778 9 41573887 41784440 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18562 dgv2340e1 9 41573887 42118524 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2471,essv12218,essv8236 M 271 0 0 "" NA18999,NA19101,NA19116 essv5269 9 41573887 43065826 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18624 nsv831566 9 41582417 41784440 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447685 S 95 0 1 "" dgv2341e1 9 41582417 43951965 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv3570,essv2130,essv14653,essv2366,essv6547,essv12376,essv12073,essv19864,essv8714,essv23166,essv2760,essv6479,essv6470,essv24094,essv16383,essv14214,essv719,essv3488,essv18029,essv18909,essv25067,essv3829,essv2957 M 271 0 0 "" NA07048,NA10831,NA12234,NA12717,NA12878,NA12892,NA18624,NA18636,NA18637,NA18913,NA18940,NA18953,NA18972,NA18978,NA18987,NA18995,NA18999,NA19000,NA19145,NA19172,NA19200,NA19238 nsv442542 9 41889553 41902234 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv508546 9 41895609 42293698 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618852 S 4 0 1 "" NA10860 essv23275 9 42050602 43050473 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA07345 nsv8460 9 42219819 43822914 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18276,nssv21173,nssv18045,nssv18277,nssv20984,nssv20601,nssv15971,nssv20607,nssv16181,nssv17985,nssv20203,nssv19501,nssv16480,nssv17776,nssv16151,nssv20967,nssv19561,nssv19651,nssv21263,nssv16685,nssv20877,nssv22470,nssv16655,nssv20697,nssv19258,nssv17780,nssv19018,nssv19891,nssv19741,nssv20817,nssv17927,nssv19048,nssv19801,nssv19681,nssv19558,nssv19168,nssv16570,nssv20577,nssv18135,nssv21203,nssv20727,nssv20262,nssv21044,nssv18287,nssv19498,nssv22380,nssv21023,nssv20571,nssv16600,nssv19228,nssv21293,nssv20511,nssv22410,nssv17867,nssv17396,nssv17660,nssv20963,nssv20481,nssv19318,nssv18168,nssv19348,nssv17836,nssv19138,nssv17486,nssv18908,nssv16061,nssv18489,nssv17304,nssv19378,nssv18247,nssv22290,nssv20541,nssv19028,nssv19198,nssv20933,nssv20173,nssv21014,nssv20143,nssv18459,nssv20202,nssv18303,nssv17630,nssv21113,nssv17947,nssv21233,nssv19831,nssv18998,nssv22320,nssv18539,nssv19058,nssv18569,nssv20787,nssv18047,nssv16031,nssv20997,nssv18216,nssv18307,nssv17897,nssv18197,nssv22260,nssv16001,nssv17720,nssv19411,nssv19711,nssv18246,nssv17690,nssv17584,nssv19621,nssv18938,nssv20993,nssv19591,nssv17600,nssv19471,nssv19078,nssv18127,nssv18187,nssv20292,nssv17925,nssv18157,nssv16882,nssv18167,nssv18217,nssv17977,nssv17806,nssv20172,nssv17987,nssv16912,nssv19468,nssv19408,nssv20667,nssv19921,nssv20907,nssv18015,nssv17665,nssv19861,nssv19528,nssv19618,nssv17955,nssv17456,nssv20293,nssv17570,nssv18007,nssv17810,nssv20847,nssv20263,nssv18968,nssv21053,nssv18165,nssv18599,nssv19531,nssv16540,nssv18227,nssv17366,nssv20142,nssv21027,nssv22350,nssv18137,nssv17957,nssv16121,nssv16510,nssv18037,nssv20637,nssv17334,nssv18186,nssv18337,nssv19118,nssv18017,nssv18257,nssv18629,nssv17866,nssv20937,nssv19588,nssv22230,nssv20232,nssv21143,nssv18336,nssv20233,nssv17364,nssv18306,nssv17336,nssv19288 M 31 14 22 Samples from several populations that are part of the HapMap project. "" NA07048,NA10839,NA10847,NA10863,NA11830,NA12155,NA12740,NA12802,NA12872,NA18502,NA18504,NA18517,NA18537,NA18552,NA18563,NA18564,NA18853,NA18860,NA18942,NA18972,NA18975,NA18980,NA19007,NA19132,NA19144,NA19173,NA19221,NA19240 dgv2342e1 9 42525734 43755411 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv22272,essv15282,essv12156,essv12834,essv4913,essv2431,essv5374,essv18368,essv22373,essv14319,essv23818,essv20774,essv15824,essv16335,essv19086,essv8224,essv2304,essv9671,essv32,essv395 M 271 0 0 "" NA07055,NA12146,NA12249,NA12762,NA12763,NA12875,NA18561,NA18563,NA18913,NA18940,NA18971,NA18991,NA18999,NA19094,NA19101,NA19116,NA19120,NA19193,NA19194,NA19223 nsv442543 9 42602159 43202740 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv2343e1 9 42650537 43065826 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1930,essv7063,essv6236,essv4805,essv121,essv23026,essv3456 M 271 0 0 "" NA12812,NA18537,NA18620,NA18636,NA18959,NA18968,NA18992 dgv2344e1 9 42650537 44769175 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1370,essv24677,essv4066,essv20946,essv20101,essv19972,essv3808,essv2066,essv2847 M 271 0 0 "" NA07048,NA11829,NA12801,NA12813,NA18635,NA18943,NA18949,NA18953,NA19007 dgv2345e1 9 42650537 45530433 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv664,essv5549,essv2803 M 271 0 0 "" NA18529,NA18975,NA18987 nsv821662 9 42671740 43945910 CNV Gain Sebat_et_al_2004 15273396 ROMA Custom Nimblegen photoprint 85000 probe ROMA oligo array nssv1421230,nssv1421231,nssv1421234,nssv1421232,nssv1421233 M 31 5 0 "" nsv831567 9 42808474 42952700 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447687,nssv1447686,nssv1447690,nssv1447689,nssv1447688 M 95 0 5 "" nsv831568 9 42921526 43098777 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447692,nssv1447691 M 95 1 1 "" dgv2346e1 9 42936442 43618057 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv4932,essv17873,essv9856,essv1799 M 271 0 0 "" NA10857,NA18537,NA18971,NA19144 dgv2347e1 9 42936442 43951965 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv5864,essv11339,essv13250,essv20847,essv6071,essv18503,essv21573,essv5 M 271 0 0 "" NA11829,NA12146,NA12763,NA18555,NA18621,NA18945,NA19128,NA19131 nsv831569 9 43281494 43349650 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447693,nssv1447694 M 95 0 2 "" nsv831571 9 43281494 43389513 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447696 S 95 1 0 "" nsv831572 9 43299196 43417700 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447697,nssv1447698 M 95 0 2 "" nsv6541 9 43370147 43401379 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10659 S 9 1 0 "" NA18956 nsv442544 9 43394507 43424314 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv2348e1 9 43409087 45007237 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv5206,essv6950 M 271 0 0 "" NA18582,NA18611 nsv7423 9 43428673 43530967 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9765,nssv9764,nssv803,nssv10660,nssv3717,nssv802 M 9 0 0 "" NA12878,NA18507,NA18956,NA19240 essv23039 9 43456697 43755411 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12812 nsv831573 9 43478056 43724197 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447700,nssv1447699 M 95 0 2 "" dgv2349e1 9 43709588 45013784 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv3539,essv5286 M 271 0 0 "" NA18624,NA18965 nsv442545 9 43806624 43934502 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv831574 9 43809946 43901276 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447707,nssv1447701,nssv1447704,nssv1447703,nssv1447702,nssv1447705,nssv1447710,nssv1447709,nssv1447708 M 95 0 9 "" nsv8461 9 43868064 43869808 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18195 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18537 nsv8462 9 43885267 43886812 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21057,nssv17695,nssv18519,nssv19148 M 31 3 1 Samples from several populations that are part of the HapMap project. "" NA12155,NA12740,NA18980,NA19132 nsv8463 9 43936836 43944216 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18367,nssv21323,nssv21117,nssv16211,nssv22500 M 31 4 1 Samples from several populations that are part of the HapMap project. "" NA11830,NA12872,NA18972,NA19132,NA19221 nsv8464 9 43947942 43949448 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18549 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA12740 nsv8465 9 43959984 44065288 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16942,nssv18317,nssv16715,nssv20631,nssv16519,nssv17614,nssv17394,nssv17725 M 31 0 8 Samples from several populations that are part of the HapMap project. "" NA10839,NA10847,NA18563,NA18572,NA18860,NA18942,NA18975,NA18980 nsv831575 9 43973635 44172843 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447712,nssv1447711 M 95 0 2 "" dgv2350e1 9 44037059 44239139 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv19756,essv18413 M 271 0 0 "" NA10835,NA12249 dgv2351e1 9 44037059 44672026 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv9096,essv11809,essv7343,essv22818,essv2270 M 271 0 0 "" NA12004,NA18521,NA18570,NA18966,NA19132 dgv2352e1 9 44037059 45013784 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv17058,essv3769 M 271 0 0 "" NA18961,NA19172 nsv469618 9 44038104 44215582 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649542 M 265 0 0 Samples from several populations that are part of the HapMap project. "" nsv8466 9 44083617 44086228 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19951 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19240 nsv8467 9 44105816 44130595 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18333 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA07048 nsv831576 9 44113105 44170412 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447719,nssv1447714,nssv1447713,nssv1447718,nssv1447716,nssv1447720,nssv1447715,nssv1447721 M 95 0 8 "" nsv8468 9 44148167 44150464 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22530,nssv20661 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA18860,NA19221 nsv8470 9 44153348 44153721 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18363,nssv18225,nssv18366,nssv17252,nssv20323 M 31 0 5 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10863,NA18504,NA18537 nsv8471 9 44185383 44222638 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21147,nssv22560 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA19132,NA19221 nsv442148 9 44201128 44555455 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv831577 9 44225893 44438500 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447723,nssv1447724,nssv1447722 M 95 2 1 "" dgv2353e1 9 44289140 44567187 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1229,essv8595,essv12353,essv12648,essv10236,essv19184,essv17703,essv2616,essv19542,essv22866,essv22197,essv24476 M 271 0 0 "" NA12044,NA12056,NA12760,NA12864,NA12865,NA12872,NA18500,NA18990,NA18995,NA19138,NA19152,NA19239 dgv2354e1 9 44289140 44769175 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv822,essv8794,essv21302,essv2166,essv8471,essv3017,essv5461,essv1921,essv20299,essv16902,essv6158,essv468,essv10756,essv14096,essv22045,essv14888,essv22127,essv17879,essv7396,essv19600,essv10058,essv23216,essv7764,essv16109,essv14441,essv16802,essv8277,essv8182,essv24797,essv9222,essv11994,essv13798,essv13836,essv16440,essv9874,essv20399,essv14144,essv15544,essv18314,essv3979,essv11021,essv6043,essv23468,essv10468,essv10113,essv1770,essv16928,essv5797,essv21441,essv6841,essv23401,essv8123,essv15066,essv21180,essv19414,essv5907,essv15765,essv11571,essv4638,essv13088,essv9390,essv19268,essv24669,essv13446,essv10669,essv24863,essv17760,essv17317,essv11421,essv281,essv24598,essv11215,essv8380,essv11913,essv7593,essv5128,essv6341,essv18134,essv581,essv7290,essv5724,essv15309,essv9792,essv14972,essv17189,essv15616,essv9722,essv12698,essv1592,essv1470,essv20591,essv3384,essv11160,essv3727,essv14761,essv213,essv17520,essv16699,essv18935,essv13132,essv1214,essv24303,essv1092,essv2624,essv163,essv3102,essv7201,essv14374,essv10948,essv11633,essv10353,essv12521 M 271 0 0 "" NA07000,NA07034,NA07056,NA10830,NA10831,NA10838,NA10846,NA10854,NA10855,NA10856,NA10857,NA10860,NA11829,NA11830,NA11840,NA11992,NA11993,NA12003,NA12005,NA12144,NA12154,NA12155,NA12156,NA12717,NA12762,NA18502,NA18506,NA18507,NA18508,NA18515,NA18516,NA18517,NA18522,NA18523,NA18532,NA18542,NA18545,NA18547,NA18550,NA18566,NA18571,NA18577,NA18579,NA18592,NA18593,NA18594,NA18609,NA18623,NA18632,NA18852,NA18853,NA18854,NA18855,NA18856,NA18857,NA18858,NA18861,NA18862,NA18863,NA18870,NA18872,NA18912,NA18913,NA18914,NA18942,NA18944,NA18945,NA18947,NA18948,NA18951,NA18952,NA18959,NA18960,NA18964,NA18967,NA18968,NA18969,NA18970,NA18973,NA18978,NA18981,NA18997,NA18998,NA19099,NA19100,NA19102,NA19103,NA19116,NA19128,NA19129,NA19130,NA19131,NA19137,NA19139,NA19140,NA19142,NA19143,NA19144,NA19145,NA19153,NA19154,NA19159,NA19171,NA19173,NA19192,NA19201,NA19204,NA19205,NA19206,NA19207,NA19209,NA19211 dgv2355e1 9 44289140 45422149 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv12581,essv6755,essv12792 M 271 0 0 "" NA18562,NA19098,NA19120 dgv2356e1 9 44289140 45935928 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2873,essv4894,essv5390,essv15471 M 271 0 0 "" NA18505,NA18561,NA18563,NA18953 nsv831578 9 44289144 44441420 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447726,nssv1447725 M 95 0 2 "" nsv8472 9 44308845 44609976 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19648,nssv18347,nssv22590,nssv18659,nssv17840,nssv22620,nssv20691,nssv17896,nssv21353,nssv17785,nssv18579 M 31 7 4 Samples from several populations that are part of the HapMap project. "" NA12740,NA18552,NA18563,NA18853,NA18860,NA18972,NA18980,NA19144,NA19173,NA19221 nsv7424 9 44327401 45520639 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3718,nssv9921,nssv6273,nssv9766,nssv11202,nssv804,nssv10662,nssv10661,nssv5157 M 9 0 0 "" NA12156,NA12878,NA15510,NA18507,NA18956,NA19129,NA19240 nsv831579 9 44330575 44502477 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447729,nssv1447732,nssv1447731,nssv1447730,nssv1447727 M 95 2 3 "" nsv416246 9 44358998 44358998 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434824 M 24 "" nsv469542 9 44387673 44482178 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649652 M 265 1 5 Samples from several populations that are part of the HapMap project. "" nsv471658 9 44387674 44620237 CNV Loss Sharp et al 2005 15918152 BAC_aCGH,FISH Eichler Segmental Duplication BAC array nssv549078,nssv549065,nssv549074,nssv549060,nssv549004,nssv549010,nssv549059,nssv549075,nssv549002,nssv549019,nssv549066,nssv548992,nssv549000,nssv549080,nssv549009,nssv549061,nssv549058,nssv548998,nssv548990,nssv549014,nssv548994,nssv548993,nssv549090,nssv549088,nssv549083,nssv549015,nssv548988,nssv548991,nssv549003,nssv549070,nssv549071,nssv549005,nssv549092,nssv549084,nssv549006,nssv548995,nssv549089,nssv549011,nssv549018,nssv549068,nssv548996,nssv549008,nssv549072,nssv549085,nssv549076,nssv548987,nssv548984,nssv549069,nssv549086,nssv549073,nssv548989,nssv549082,nssv549091,nssv549063,nssv549095,nssv549094,nssv548985,nssv549064,nssv549098,nssv549016,nssv548997,nssv549062,nssv549079,nssv549013,nssv549012,nssv549017,nssv549087,nssv549020,nssv549081,nssv549096,nssv549097,nssv548999,nssv549067,nssv548986,nssv549007,nssv549093,nssv549077,nssv548983,nssv549001 M 48 0 43 "" JK1051,JK1058,JK1061,JK1688,JK776,NA10469,NA10470,NA10471,NA10472,NA10473,NA10492,NA10493,NA10494,NA10495,NA10496,NA10967,NA10969,NA10970,NA10971,NA10976,NA10979,NA11323,NA11521,NA11523,NA15724,NA15725,NA15726,NA15727,NA15729,NA15730,NA15731,NA15732,NA16689,NA17014,NA17015,NA17016,NA17017,NA17020,NA17051,NA17052,NA17058,NA17059,P86GA nsv433402 9 44403501 44562362 CNV Gain Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463283 S 9 1 0 Samples from several populations that are part of the HapMap project. "" NA12878 nsv831580 9 44424546 44574192 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447734,nssv1447733 M 95 1 1 "" nsv469540 9 44456167 44620237 CNV Gain Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649650 M 265 2 0 Samples from several populations that are part of the HapMap project. "" nsv831582 9 44461601 44565470 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447735,nssv1447736,nssv1447737 M 95 3 0 "" nsv831583 9 44482174 44638331 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447738,nssv1447741,nssv1447742,nssv1447743 M 95 2 2 "" essv24060 9 44502980 44567187 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA10859 nsv831584 9 44505226 44591064 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447746,nssv1447745,nssv1447744 M 95 1 2 "" essv18712 9 44505796 44672026 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12874 nsv831585 9 44549697 44672644 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447747 S 95 0 1 "" nsv438105 9 44551833 44577510 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470100,nssv470101 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA18500,NA19207 nsv831586 9 44570231 44765012 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447749,nssv1447748 M 95 0 2 "" essv20082 9 44586810 45244282 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA07048 nsv8473 9 44616475 44617469 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18393 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA07048 dgv36n14 9 44647846 44764133 CNV Gain Cooper et al 2008 18776910 SNP_array nsv433403,nsv433404 M 9 2 0 "" NA18507,NA19240 nsv8474 9 44650514 44686568 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21177,nssv22650,nssv16241,nssv17644,nssv19981,nssv18397 M 31 5 1 Samples from several populations that are part of the HapMap project. "" NA10839,NA11830,NA12872,NA19132,NA19221,NA19240 nsv831587 9 44669521 44759677 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447750,nssv1447756,nssv1447757,nssv1447758,nssv1447752,nssv1447755,nssv1447753,nssv1447754,nssv1447759,nssv1447761,nssv1447763,nssv1447760 M 95 0 12 "" nsv8475 9 44692675 44696994 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18377 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18563 essv18406 9 44819176 45013784 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12249 dgv2357e1 9 44819176 45530433 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv8449,essv1789,essv19905,essv6132,essv15712,essv1417 M 271 0 0 "" NA12813,NA18516,NA18532,NA18912,NA18944,NA18997 nsv831588 9 44825699 44902257 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447769,nssv1447765,nssv1447764,nssv1447768,nssv1447767,nssv1447770,nssv1447766 M 95 0 7 "" nsv433405 9 44832680 44935106 CNV Gain Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463286 S 9 1 0 Samples from several populations that are part of the HapMap project. "" NA19240 nsv469761 9 44840600 45007222 CNV Gain Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649782 M 265 2 0 Samples from several populations that are part of the HapMap project. "" nsv471659 9 44840601 45007222 CNV Gain+Loss Sharp et al 2005 15918152 BAC_aCGH,FISH Eichler Segmental Duplication BAC array nssv548945,nssv548940,nssv548941,nssv548937,nssv550443,nssv550445,nssv548942,nssv550441,nssv550444,nssv548946,nssv550439,nssv550440,nssv548943,nssv550442,nssv548938,nssv548939,nssv548944 M 48 1 10 "" JK1058,NA10970,NA10976,NA10979,NA11523,NA15724,NA15726,NA15727,NA15732,NA15733,NA16688 essv8096 9 44840604 45935928 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19206 nsv469535 9 44851608 44958138 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649644 M 265 0 0 Samples from several populations that are part of the HapMap project. "" nsv8476 9 44912772 44916802 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18407 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18563 nsv8477 9 44923203 44959289 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16271,nssv20322,nssv21207,nssv18457,nssv17674,nssv20011,nssv22680 M 31 6 1 Samples from several populations that are part of the HapMap project. "" NA10839,NA11830,NA12872,NA18502,NA19132,NA19221,NA19240 nsv8478 9 45005889 45065297 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18467 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18563 dgv2358e1 9 45063785 45530433 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv7745,essv1282,essv9085,essv2686,essv10436,essv19618,essv7330,essv9936,essv14478,essv9389,essv13191,essv2032,essv11935,essv174 M 271 0 0 "" NA12155,NA18502,NA18515,NA18542,NA18570,NA18853,NA18949,NA18967,NA18968,NA18995,NA19102,NA19132,NA19145,NA19201 dgv2359e1 9 45063785 45935928 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1015,essv6896,essv4232,essv11578,essv3528,essv17131,essv3818,essv6948,essv3421 M 271 0 0 "" NA18582,NA18603,NA18605,NA18943,NA18945,NA18965,NA19005,NA19171,NA19173 nsv8479 9 45066451 45093537 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19178 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA12155 nsv8481 9 45179935 45182276 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20721 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18860 nsv8482 9 45193819 45417715 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17870,nssv17815,nssv18609,nssv20781,nssv22709,nssv17926,nssv21104,nssv19678 M 31 5 3 Samples from several populations that are part of the HapMap project. "" NA12740,NA18517,NA18552,NA18853,NA18860,NA18980,NA19144,NA19221 dgv2360e1 9 45294283 45422149 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv18083,essv7434,essv3726 M 271 0 0 "" NA12145,NA18623,NA18947 dgv2361e1 9 45294283 45530433 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv8822,essv20281,essv14865,essv1400,essv9743,essv10010,essv8298,essv3759,essv10092,essv15756,essv16943,essv5091,essv8200,essv11658,essv6015,essv5212,essv24761,essv12564,essv4055,essv13847,essv17751,essv24289,essv11446,essv5898,essv23936,essv6314,essv7284,essv18320,essv11974,essv5734,essv3858,essv11035,essv445,essv18919,essv1945,essv10697 M 271 0 0 "" NA10831,NA10846,NA10856,NA10860,NA12005,NA12144,NA12814,NA18508,NA18517,NA18522,NA18550,NA18571,NA18577,NA18592,NA18593,NA18609,NA18611,NA18635,NA18854,NA18855,NA18857,NA18913,NA18952,NA18959,NA18961,NA18994,NA19007,NA19098,NA19099,NA19103,NA19116,NA19130,NA19131,NA19143,NA19144,NA19154 nsv831589 9 45294614 45429009 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447771,nssv1447772,nssv1447774,nssv1447775,nssv1447776 M 95 1 4 "" nsv831590 9 45311470 45490540 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447778,nssv1447777 M 95 1 1 "" nsv8483 9 45429117 45498263 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21383,nssv19708,nssv20352,nssv17900,nssv18689,nssv21134,nssv17956,nssv21237 M 31 8 0 Samples from several populations that are part of the HapMap project. "" NA18502,NA18517,NA18552,NA18853,NA18972,NA19132,NA19144,NA19173 nsv8484 9 45500511 45502857 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20811 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18860 nsv8485 9 45516856 45523209 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17845 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18980 dgv2362e1 9 45519341 45935928 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv19986,essv324 M 271 0 0 "" NA07048,NA18971 nsv8486 9 45589224 45624804 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17986,nssv19208,nssv20382 M 31 2 1 Samples from several populations that are part of the HapMap project. "" NA12155,NA18502,NA18552 nsv6542 9 45601562 45606640 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10663 S 9 1 0 "" NA18956 nsv8487 9 45711249 45719807 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18453 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA07048 nsv8488 9 45778095 45784100 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18255 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18537 dgv2363e1 9 64135929 64295467 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2855,essv4251,essv20778,essv12348 M 271 0 0 "" NA12146,NA18603,NA18953,NA19138 essv355 9 64135929 64504445 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18971 dgv2364e1 9 64135929 64767717 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv7618,essv1996,essv6729,essv15506 M 271 0 0 "" NA18505,NA18545,NA18562,NA18949 dgv2365e1 9 64135929 65072855 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv8235,essv6941 M 271 0 0 "" NA18582,NA19116 dgv2366e1 9 64135929 65886538 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv5600,essv4044,essv3408,essv7753,essv12775,essv20659 M 271 0 0 "" NA12892,NA18529,NA18542,NA18635,NA18945,NA19120 essv20094 9 64135929 66380661 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA07048 nsv438106 9 64137942 64162950 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470103,nssv470102 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA18500,NA19207 nsv6544 9 64141347 64192367 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv805,nssv6274 M 9 0 2 "" NA12156,NA19240 nsv7425 9 64151322 64199980 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10664,nssv6275 M 9 0 0 "" NA12156,NA18956 nsv7426 9 64209765 64252409 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv806 S 9 0 0 "" NA19240 nsv821663 9 64258651 64260121 CNV Loss Sebat_et_al_2004 15273396 ROMA Custom Nimblegen photoprint 85000 probe ROMA oligo array nssv1421236 S 31 0 1 "" nsv442149 9 64266131 64443018 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv8489 9 64286990 64346119 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22738,nssv21267,nssv18483 M 31 0 3 Samples from several populations that are part of the HapMap project. "" NA07048,NA19132,NA19221 essv1350 9 64345468 64767717 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19007 nsv7427 9 64447249 64687955 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10665 S 9 0 0 "" NA18956 nsv442546 9 64672805 64717369 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" essv23946 9 64724577 64835350 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12814 dgv2367e1 9 64724577 65072855 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv11549,essv2282 M 271 0 0 "" NA18966,NA19173 dgv2368e1 9 64817718 65886538 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv428,essv4231 M 271 0 0 "" NA18603,NA18952 dgv2369e1 9 64817718 66380661 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv19964,essv10821,essv2832 M 271 0 0 "" NA12813,NA18871,NA18953 dgv2370e1 9 64885350 65072855 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv6337,essv11031,essv20284,essv1447,essv17774,essv13187,essv15766,essv6020,essv24254,essv7166,essv3749,essv9941,essv8127,essv14720,essv17946,essv649,essv2660 M 271 0 0 "" NA10831,NA10856,NA12003,NA12144,NA18547,NA18571,NA18609,NA18944,NA18961,NA18967,NA18975,NA19102,NA19131,NA19143,NA19145,NA19159,NA19206 dgv2371e1 9 64885350 65433585 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv21349,essv4899,essv6161,essv2034,essv24374 M 271 0 0 "" NA12707,NA12878,NA18532,NA18561,NA18949 dgv2372e1 9 64885350 67651405 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv3542,essv15521 M 271 0 0 "" NA18505,NA18965 nsv7428 9 64893471 64931110 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10666,nssv3720 M 9 0 0 "" NA12878,NA18956 nsv831591 9 64937782 65072604 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447779,nssv1447780 M 95 0 2 "" nsv6545 9 64942356 64947625 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2809 S 9 1 0 "" NA18555 nsv469519 9 64942569 65028177 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649532 M 265 6 3 Samples from several populations that are part of the HapMap project. "" nsv7429 9 64942603 68150142 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5158,nssv3722,nssv6276,nssv1785,nssv10667 M 9 0 0 "" NA12156,NA12878,NA18555,NA18956,NA19129 nsv8490 9 64948675 64959130 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19738 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19144 nsv8492 9 65007266 65286786 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18016,nssv18513,nssv20041,nssv19798,nssv18285,nssv17875 M 31 2 4 Samples from several populations that are part of the HapMap project. "" NA07048,NA18537,NA18552,NA18980,NA19144,NA19240 nsv8493 9 65309534 65309907 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18315,nssv18543,nssv18396,nssv20353,nssv17282 M 31 0 5 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10863,NA18504,NA18537 nsv831593 9 65352200 65427365 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447781,nssv1447783,nssv1447782,nssv1447786,nssv1447787,nssv1447785 M 95 0 6 "" nsv8494 9 65409831 65410861 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18573 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA07048 nsv8495 9 65417323 65429703 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18527 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18563 nsv8496 9 65432315 65506767 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16630 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA12802 dgv2373e1 9 65483586 65886538 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv329,essv4567 M 271 0 0 "" NA18524,NA18971 nsv433406 9 65497340 65664740 CNV Gain Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463287 S 9 1 0 Samples from several populations that are part of the HapMap project. "" NA19240 nsv8497 9 65540141 65842267 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18617,nssv18603,nssv18557,nssv18587 M 31 1 1 Samples from several populations that are part of the HapMap project. "" NA07048,NA18563 nsv433407 9 65559825 65672604 CNV Gain Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463288 S 9 1 0 Samples from several populations that are part of the HapMap project. "" NA18507 dgv93n68 9 65660903 65886472 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH nsv831594,nsv831595 M 95 0 4 "" dgv94n68 9 65758059 65886472 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH nsv831597,nsv831596 M 95 0 2 "" essv996 9 65853919 66714351 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18964 essv2759 9 65853919 68256580 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19000 nsv8498 9 65886442 65944974 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21473,nssv17454,nssv16972,nssv20071 M 31 3 1 Samples from several populations that are part of the HapMap project. "" NA18942,NA18972,NA18975,NA19240 nsv8499 9 65957144 66149539 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18633,nssv18639,nssv20442,nssv17930,nssv17002,nssv16775,nssv20472,nssv18345,nssv22797,nssv16301,nssv20161,nssv21503,nssv21164,nssv21327,nssv17905,nssv20841,nssv18046,nssv20131,nssv17704,nssv18198,nssv20871,nssv18487,nssv21297,nssv17516 M 31 8 14 Samples from several populations that are part of the HapMap project. "" NA07048,NA10839,NA10847,NA11830,NA12740,NA12872,NA18502,NA18517,NA18537,NA18552,NA18564,NA18853,NA18860,NA18942,NA18972,NA18980,NA19007,NA19132,NA19221,NA19240 nsv831598 9 66037363 66224401 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447794 S 95 0 1 "" dgv2374e1 9 66093288 66188415 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv14691,essv17482 M 271 0 0 "" NA12762,NA19159 dgv2375e1 9 66093288 66380661 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv10545,essv6269,essv20954,essv18398 M 271 0 0 "" NA12249,NA12801,NA18636,NA19240 dgv2376e1 9 66093288 67246069 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv12826,essv4876,essv6761,essv5596,essv1401,essv257,essv4074,essv2038 M 271 0 0 "" NA18529,NA18561,NA18562,NA18635,NA18948,NA18949,NA19007,NA19120 nsv8500 9 66162260 66166888 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18375 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18537 essv22590 9 66186416 66380661 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA07348 dgv2377e1 9 66186416 66762700 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1744,essv1477,essv21312,essv20654 M 271 0 0 "" NA12878,NA12892,NA18944,NA18997 nsv8501 9 66230842 66231215 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18405,nssv20383,nssv18663,nssv17312,nssv18456 M 31 0 5 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10863,NA18504,NA18537 nsv8503 9 66262543 66299797 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22826 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19221 nsv831599 9 66273824 66311972 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447799,nssv1447796,nssv1447798,nssv1447797 M 95 0 4 "" nsv8504 9 66283602 66341671 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18647,nssv18693,nssv17484 M 31 2 1 Samples from several populations that are part of the HapMap project. "" NA07048,NA18563,NA18975 nsv8505 9 66340327 66760496 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21224,nssv22884,nssv18719,nssv18677,nssv20901,nssv17960,nssv20931,nssv22855,nssv18669,nssv18228,nssv21194,nssv19828,nssv18749,nssv18486 M 31 6 4 Samples from several populations that are part of the HapMap project. "" NA10863,NA12740,NA18517,NA18563,NA18564,NA18853,NA18860,NA19144,NA19173,NA19221 nsv508547 9 66452762 67351017 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618853 S 4 0 1 "" NA10860 dgv2378e1 9 66528164 66762700 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv14382,essv18128,essv8425,essv89,essv12479,essv11997,essv11829,essv5127,essv18428,essv14864,essv3859,essv5911,essv10752,essv21254,essv1221,essv10116,essv5795,essv14474,essv6142,essv22096,essv20195,essv12573,essv22842,essv5172,essv3080,essv13138,essv7163,essv7427,essv19627,essv15725,essv9027,essv13754,essv12289,essv11962,essv23514,essv8636,essv4612,essv17553,essv11290,essv24705,essv24313,essv10244,essv23178,essv15590,essv21426,essv9928,essv16717,essv13418,essv23426,essv13926,essv16454,essv10660,essv17310,essv11560,essv11448,essv24586,essv8359,essv22126,essv11127,essv5504,essv19457,essv14132,essv20364,essv8730,essv9754,essv2240,essv14997,essv17137,essv17730,essv7280,essv10934,essv19180,essv8832,essv14775,essv6018,essv12647,essv429,essv6827,essv20612,essv23623,essv14193,essv10064,essv9209,essv24390,essv4684,essv10263,essv24475 M 271 0 0 "" NA07034,NA07056,NA10830,NA10854,NA10855,NA10856,NA10857,NA11829,NA11831,NA11832,NA11840,NA11992,NA11993,NA12004,NA12006,NA12056,NA12154,NA12155,NA12156,NA12707,NA12717,NA12762,NA12865,NA12872,NA18500,NA18502,NA18506,NA18507,NA18508,NA18516,NA18517,NA18521,NA18522,NA18523,NA18532,NA18547,NA18550,NA18566,NA18571,NA18577,NA18579,NA18592,NA18594,NA18611,NA18622,NA18623,NA18632,NA18854,NA18855,NA18856,NA18857,NA18858,NA18861,NA18863,NA18870,NA18952,NA18966,NA18969,NA18991,NA18994,NA18995,NA19092,NA19098,NA19099,NA19102,NA19128,NA19130,NA19131,NA19132,NA19137,NA19138,NA19139,NA19140,NA19142,NA19145,NA19152,NA19153,NA19159,NA19171,NA19173,NA19192,NA19201,NA19204,NA19207,NA19209,NA19211,NA19239 dgv2379e1 9 66528164 66987465 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv9324,essv9662 M 271 0 0 "" NA18853,NA18913 dgv2380e1 9 66528164 67246069 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv813,essv663,essv1636,essv17832,essv15650,essv307,essv20295,essv18091,essv572,essv16888,essv7784,essv16100,essv8303,essv7530,essv10989,essv161,essv8216,essv13061,essv15152,essv24780,essv7340,essv16930,essv16810,essv11648,essv24850,essv19245,essv15318,essv18261,essv21173,essv5709,essv12746,essv17960,essv3717,essv1165,essv18962,essv16262,essv1951,essv2200,essv3782,essv4002,essv1109,essv2659 M 271 0 0 "" NA07000,NA10831,NA10838,NA10846,NA10860,NA11830,NA12003,NA12005,NA12144,NA12145,NA18542,NA18545,NA18570,NA18593,NA18852,NA18862,NA18872,NA18912,NA18914,NA18942,NA18947,NA18951,NA18959,NA18960,NA18961,NA18964,NA18967,NA18968,NA18970,NA18973,NA18975,NA18978,NA18998,NA19100,NA19103,NA19116,NA19129,NA19143,NA19144,NA19154,NA19161,NA19205 dgv2381e1 9 66528164 67978103 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv6955,essv3338 M 271 0 0 "" NA18582,NA18945 dgv12n29 9 66528167 66704225 CNV Complex Locke et al 2006 16826518 BAC_aCGH nsv469554,nsv469763 M 265 3 6 "" nsv471661 9 66528168 66762700 CNV Loss Sharp et al 2005 15918152 BAC_aCGH,FISH Eichler Segmental Duplication BAC array nssv549165,nssv550448,nssv550551,nssv548926,nssv550473,nssv548903,nssv550482,nssv550479,nssv548915,nssv548908,nssv550478,nssv550449,nssv549181,nssv550454,nssv550546,nssv550552,nssv549189,nssv548910,nssv550455,nssv549171,nssv550543,nssv550554,nssv549180,nssv549175,nssv549162,nssv550550,nssv548918,nssv549197,nssv548906,nssv550460,nssv548905,nssv550466,nssv550452,nssv550468,nssv550458,nssv548931,nssv549166,nssv550549,nssv549177,nssv549198,nssv549199,nssv550461,nssv549161,nssv550453,nssv548928,nssv550547,nssv549168,nssv548901,nssv548925,nssv550542,nssv549186,nssv548909,nssv550540,nssv549174,nssv549195,nssv549191,nssv548917,nssv549172,nssv550447,nssv550548,nssv548916,nssv548923,nssv548919,nssv549194,nssv548927,nssv550537,nssv550477,nssv549188,nssv550471,nssv550451,nssv548930,nssv550474,nssv550446,nssv549173,nssv549193,nssv550464,nssv548935,nssv549176,nssv549182,nssv548911,nssv550553,nssv548922,nssv550536,nssv548902,nssv548932,nssv550555,nssv549192,nssv550457,nssv550462,nssv550470,nssv550541,nssv550545,nssv549163,nssv549187,nssv550456,nssv549185,nssv548913,nssv550539,nssv550544,nssv549179,nssv548936,nssv548907,nssv550459,nssv548912,nssv549178,nssv548921,nssv550469,nssv549190,nssv549164,nssv548924,nssv549170,nssv550463,nssv550475,nssv548933,nssv548920,nssv550538,nssv548904,nssv549167,nssv549196,nssv550472,nssv548914,nssv548934,nssv550465,nssv550450,nssv549169,nssv549184,nssv550535,nssv549200,nssv549183,nssv548929,nssv550480,nssv550467,nssv550476,nssv548900,nssv550481 M 48 0 44 "" JK1051,JK1058,JK1061,JK1688,JK776,NA10469,NA10470,NA10471,NA10472,NA10473,NA10492,NA10493,NA10494,NA10496,NA10967,NA10969,NA10970,NA10971,NA10976,NA10979,NA11323,NA11521,NA11523,NA11776,NA15724,NA15725,NA15727,NA15728,NA15729,NA15730,NA15731,NA15732,NA15733,NA16689,NA17014,NA17015,NA17016,NA17017,NA17020,NA17051,NA17052,NA17058,NA17059,P86GA nsv831600 9 66531944 66679227 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447802,nssv1447801,nssv1447803,nssv1447800 M 95 2 2 "" nsv442548 9 66576216 66578712 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv469784 9 66582867 66762700 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649805 M 265 0 0 Samples from several populations that are part of the HapMap project. "" nsv831601 9 66586338 66736323 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447805,nssv1447804 M 95 0 2 "" essv10454 9 66599110 66762700 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18515 nsv831602 9 66599167 66762645 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447808,nssv1447807 M 95 1 1 "" nsv469533 9 66631158 66732930 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649642 M 265 0 0 Samples from several populations that are part of the HapMap project. "" nsv831604 9 66757075 67041314 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447809 S 95 1 0 "" nsv8506 9 66761966 66840042 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17514,nssv18699,nssv19858,nssv20502,nssv17990,nssv17935 M 31 6 0 Samples from several populations that are part of the HapMap project. "" NA12740,NA18502,NA18853,NA18975,NA18980,NA19144 essv19908 9 66812701 67246069 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12813 nsv469532 9 66831263 66923685 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649641 M 265 0 3 Samples from several populations that are part of the HapMap project. "" nsv442549 9 66832366 66873866 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv469517 9 66839734 66975089 CNV Gain Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649703 M 265 2 0 Samples from several populations that are part of the HapMap project. "" nsv442550 9 66902140 66986363 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv8507 9 66902253 66936298 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18707 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18563 nsv831605 9 66922814 67041314 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447810 S 95 1 0 "" esv33449 9 66931960 68131416 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93889,essv101336,essv94575,essv100146 M 51 0 4 "" 21634,21805,21932,22286 nsv831606 9 66980000 67205945 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447811 S 95 1 0 "" nsv8508 9 66986373 67134783 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18729,nssv19888 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA12740,NA19144 essv24050 9 67037466 67246069 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA10859 essv17250 9 67037466 67533672 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18503 nsv6546 9 67077787 67113208 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3721 S 9 1 0 "" NA12878 nsv469684 9 67092963 67246069 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649615 M 265 1 1 Samples from several populations that are part of the HapMap project. "" nsv8509 9 67142651 67179694 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18737,nssv16660 M 31 1 1 Samples from several populations that are part of the HapMap project. "" NA12802,NA18563 nsv8510 9 67195691 67197049 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18789,nssv17342,nssv18258,nssv21254 M 31 4 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA12740,NA18517,NA18564 nsv8511 9 67236325 67241463 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17764 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA10839 dgv2382e1 9 67346070 67769770 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv405,essv19994,essv4271,essv6901 M 271 0 0 "" NA07048,NA18603,NA18605,NA18971 essv2899 9 67346070 68271653 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18953 nsv8512 9 67355740 67379052 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18136,nssv21533 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18552,NA18972 nsv469728 9 67379001 67565003 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649749 M 265 0 1 Samples from several populations that are part of the HapMap project. "" nsv8514 9 67380092 67535439 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18797,nssv18723 M 31 1 1 Samples from several populations that are part of the HapMap project. "" NA07048,NA18563 nsv831607 9 67391925 67589026 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447812 S 95 1 0 "" nsv469823 9 67392169 67613493 CNV Gain Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649844 M 265 2 0 Samples from several populations that are part of the HapMap project. "" nsv442551 9 67408822 67425701 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" essv10838 9 67469692 67651405 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18871 nsv442552 9 67503101 67518504 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv469514 9 67519200 67660106 CNV Gain Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649670 M 265 2 0 Samples from several populations that are part of the HapMap project. "" nsv8515 9 67554914 67576142 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18827 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18563 nsv508549 9 67578493 67866075 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618854 S 4 0 1 "" NA10860 nsv8516 9 67647094 67685051 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16690 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA12802 nsv442553 9 67727842 67744265 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv469665 9 67819815 67978103 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649594 M 265 0 0 Samples from several populations that are part of the HapMap project. "" dgv2383e1 9 67827217 68383081 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv20002,essv4299 M 271 0 0 "" NA07048,NA18603 nsv8517 9 67869806 67907061 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv22913,nssv16720 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA12802,NA19221 nsv471467 9 67935112 67938218 CNV Duplication Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548363,nssv548362,nssv548364 M 3 "" nsv8518 9 67935695 68145056 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18857,nssv22971,nssv22942 M 31 1 1 Samples from several populations that are part of the HapMap project. "" NA18563,NA19221 dgv2384e1 9 68065023 68271653 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1819,essv15274,essv23051 M 271 0 0 "" NA12812,NA18976,NA19094 dgv2385e1 9 68065023 68383081 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1013,essv12248,essv3406,essv352 M 271 0 0 "" NA18945,NA18971,NA19005,NA19101 nsv6547 9 68076995 68111427 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2810 S 9 1 0 "" NA18555 nsv831608 9 68094579 68124036 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447813 S 95 0 1 "" nsv831609 9 68137546 68273938 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447814,nssv1447816,nssv1447815 M 95 3 0 "" nsv8519 9 68200578 68202101 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18288,nssv21284,nssv18819,nssv17372,nssv20443,nssv17546 M 31 6 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA12740,NA18504,NA18517,NA18564,NA19007 nsv8520 9 68223878 68243331 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18887 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18563 nsv8521 9 68272461 68359406 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20961 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18860 nsv415834 9 68428188 68428264 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434412 M 24 "" esv2422258 9 68464399 68892894 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161274 S 181 1 0 "" ND05155 dgv2386e1 9 68520661 68583297 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv3687,esv953 M 271 0 0 "" NA18943 nsv6548 9 68659081 68700471 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8608 S 9 0 1 "" NA12156 nsv466393 9 68682997 68934381 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541945 S 1557 1 0 "" NINDS_214 nsv466397 9 68804311 69072577 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541947 S 1557 1 0 "" 1798860277_A nsv508550 9 68908720 69038987 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620025,nssv622610,nssv618855 M 4 0 3 "" NA10860,NA15510,NA18994 nsv6549 9 68930947 68938310 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6277 S 9 0 1 "" NA12156 nsv6550 9 68943698 68989602 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3723,nssv5159,nssv10669,nssv807,nssv1786,nssv6279 M 9 0 6 "" NA12156,NA12878,NA18555,NA18956,NA19129,NA19240 nsv416127 9 69007496 69007813 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434705 M 24 "" nsv416623 9 69057444 69057444 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv435201 M 24 "" nsv525532 9 69068593 69072577 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701667 S 2026 0 1 "" nsv831610 9 69076495 69246389 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447818 S 95 1 0 "" nsv415460 9 69174599 69174679 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434038 M 24 "" nsv8522 9 69238826 69264289 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19238,nssv16331,nssv18517,nssv20991,nssv17794 M 31 5 0 Samples from several populations that are part of the HapMap project. "" NA10839,NA11830,NA12155,NA12872,NA18860 dgv2387e1 9 69247800 69277652 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1126,essv8526 M 271 0 0 "" NA18523 nsv442554 9 69264747 69278582 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv520760 9 69265401 69278031 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv680064,nssv675046 M 2026 2 0 "" nsv818703 9 69265401 69278031 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416951,nssv1416952,nssv1416653,nssv1415883 M 112 4 0 "" NA19116,NA19138,NA19139,NA19141 nsv6551 9 69277327 69290951 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10670 S 9 1 0 "" NA18956 nsv515519 9 69320967 69348516 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv678641,nssv686124,nssv679148,nssv661864,nssv666088,nssv651809,nssv655439,nssv658314,nssv657632,nssv655725,nssv691788,nssv672478,nssv693526,nssv664193,nssv681182,nssv677635,nssv671411 M 2026 5 12 "" nsv466399 9 69320967 69363930 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541948 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00464 nsv8523 9 69321093 69356940 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv19268 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA12155 nsv442151 9 69328122 69349674 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" esv34257 9 69329605 69344100 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6987785,essv6980400,essv6980401 M 771 0 1 "" NA10831 dgv939n27 9 69329605 69348516 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv466412,nsv466402,nsv466407,nsv466404 M 1557 4 0 "" 1780862345_A,HGDP00454,HGDP00557,HGDP00579 dgv940n27 9 69329605 69348516 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv466400,nsv466410,nsv466403,nsv466405,nsv466401,nsv466408,nsv466411,nsv466409,nsv466414 M 1557 0 9 "" 1780862043_A,HGDP00125,HGDP00167,HGDP00460,HGDP00571,HGDP00688,HGDP00727,HGDP00815,HGDP01294 nsv818704 9 69329605 69348516 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417458,nssv1415895 M 112 2 0 "" NA18953,NA19140 esv34446 9 69329605 69363930 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6980108,essv6980107 M 771 1 0 "" NA18953 nsv466413 9 69329605 69389728 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541961 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00598 nsv466415 9 69329672 69361753 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541963 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00594 dgv2388e1 9 69330123 69363930 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv21606,essv23164,essv14028,essv11304,esv980,essv516,essv3839 M 271 0 0 "" NA10831,NA12155,NA18862,NA18863,NA18952,NA18953 nsv438107 9 69336183 69338631 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470104 S 269 0 1 Samples from several populations that are part of the HapMap project. "" NA18953 nsv415787 9 69432572 69432572 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434365 M 24 "" nsv831611 9 69591459 69741688 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447819 S 95 1 0 "" nsv6552 9 69659998 69694532 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2811 S 9 1 0 "" NA18555 nsv831612 9 69703332 69863807 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447820 S 95 1 0 "" nsv466416 9 69708600 69742794 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541964 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00704 esv32574 9 69732479 69732630 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv96891,essv95634 M 51 0 2 "" 21817,21841 nsv524309 9 69743731 69757242 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700211 S 2026 0 1 "" nsv515734 9 69749824 69759869 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv664624,nssv655376 M 2026 0 2 "" nsv831613 9 69815612 69969615 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447821 S 95 1 0 "" nsv510192 9 69839452 69845452 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622176 S 4 0 1 "" NA10860 nsv415477 9 69858782 69867314 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434055 M 24 "" nsv6553 9 70002485 70018526 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10671 S 9 1 0 "" NA18956 nsv6555 9 70069524 70104281 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3724,nssv5160 M 9 2 0 "" NA12878,NA19129 nsv831615 9 70082259 70249246 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447822 S 95 1 0 "" nsv507515 9 70140929 70146929 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617792,nssv621943 M 4 2 0 "" CHM,NA10860 nsv831616 9 70307409 70450482 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447823 S 95 1 0 "" nsv510944 9 70525768 70606596 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621612,nssv622391 M 4 0 0 "" NA10860,NA15510 nsv6556 9 70533712 70592652 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6280,nssv808,nssv9471,nssv10672,nssv3725,nssv5161,nssv9767 M 9 0 7 "" NA12156,NA12878,NA18507,NA18517,NA18956,NA19129,NA19240 nsv508551 9 70559383 70577376 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617371,nssv622612 M 4 0 2 "" CHM,NA18994 nsv521565 9 70697226 70697579 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698182 S 2026 0 1 "" nsv6557 9 70706132 70740334 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2812 S 9 1 0 "" NA18555 dgv72n64 9 70730411 70740434 CNV Loss Wang_et_al_2007 17921354 SNP_array nsv818706,nsv818705 M 112 0 3 "" NA19137,NA19160,NA19161 nsv442152 9 70731809 70736775 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv516833 9 70731978 70744512 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv654303,nssv686611,nssv673816,nssv676067 M 2026 0 4 "" nsv6558 9 70818645 70829929 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8609 S 9 0 1 "" NA12156 nsv527618 9 70984988 70986085 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704084 S 2026 0 1 "" nsv527238 9 70985156 70986085 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703639 S 2026 1 0 "" nsv466418 9 70987124 70998102 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541966 S 1557 0 1 "" NINDS_174 nsv522946 9 70996579 71001170 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698612 S 2026 0 1 "" nsv521140 9 71137179 71139335 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv684609,nssv682857 M 2026 2 0 "" nsv528257 9 71137179 71145089 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704823 S 2026 1 0 "" nsv466419 9 71143923 71169744 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541967 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00534 dgv486n21 9 71213447 71213948 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv526220,nsv520199 M 2026 0 2 "" nsv831617 9 71411022 71558151 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447824 S 95 1 0 "" nsv8525 9 71483392 71490472 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18020 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18853 nsv442556 9 71486290 71488376 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv2389e1 9 71486407 71491754 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv16566,esv1268 M 271 0 0 "" NA19193 nsv416820 9 71498940 71499220 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv435398 M 24 "" nsv507516 9 71565737 71571737 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620448,nssv621944 M 4 2 0 "" NA10860,NA15510 nsv416322 9 71596959 71596959 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434900 M 24 "" nsv520949 9 71623397 71640309 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697704 S 2026 0 1 "" nsv831618 9 71742634 71964853 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447825 S 95 0 1 "" nsv521672 9 71795980 71804735 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698290 S 2026 0 1 "" nsv515763 9 71909008 71924998 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv687377,nssv689255,nssv667813,nssv672293,nssv655377,nssv683573,nssv652075 M 2026 0 7 "" nsv524550 9 71936045 71945991 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700501 S 2026 1 0 "" nsv466420 9 71977341 71986096 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541968 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01318 nsv6559 9 72118169 72140276 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9922,nssv6281 M 9 2 0 "" NA12156,NA18507 nsv831619 9 72317488 72484919 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447826,nssv1447827 M 95 0 2 "" nsv831620 9 72394581 72584203 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447829 S 95 0 1 "" nsv416490 9 72640332 72640332 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv435068 M 24 "" nsv527600 9 72656543 72682114 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704062 S 2026 0 1 "" nsv6560 9 72681334 72726997 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6282 S 9 0 1 "" NA12156 nsv519713 9 72824110 72844742 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697008 S 2026 0 1 "" nsv526225 9 72832457 73216733 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702491 S 2026 1 0 "" esv33586 9 72838320 72838734 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98002,essv94152 M 51 2 0 "" 22259,22394 nsv6561 9 72985197 73020153 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv809 S 9 1 0 "" NA19240 nsv519796 9 73011685 73013881 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv658757,nssv689256 M 2026 2 0 "" nsv519016 9 73018210 73058261 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696484 S 2026 1 0 "" nsv6562 9 73084258 73128914 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8610 S 9 0 1 "" NA12156 nsv442153 9 73250412 73256220 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv442154 9 73297566 73308717 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv831621 9 73413850 73578274 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447831,nssv1447830 M 95 1 1 "" esv2422439 9 73443115 74047682 CNV Deletion Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161562 S 181 0 1 "" ND01938 nsv466421 9 73491714 73550452 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541969 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00529 nsv6563 9 73545140 73588010 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1787,nssv8611 M 9 2 0 "" NA12156,NA18555 nsv516628 9 73805798 73855270 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv654744,nssv669699 M 2026 2 0 "" nsv6564 9 73817382 73862958 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6283 S 9 0 1 "" NA12156 nsv416261 9 73890454 73890454 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434839 M 24 "" nsv416693 9 73953499 73953499 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv435271 M 24 "" nsv416981 9 74090476 74090476 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv435559 M 24 "" nsv6566 9 74098327 74133336 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv811 S 9 1 0 "" NA19240 nsv516412 9 74201781 74204474 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv669487,nssv691176,nssv680417,nssv668195 M 2026 0 4 "" nsv507517 9 74210213 74216213 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620449 S 4 1 0 "" NA15510 nsv831622 9 74278554 74376570 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447832 S 95 1 0 "" dgv487n21 9 74330213 74393560 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv528271,nsv527927 M 2026 2 0 "" nsv517655 9 74483888 74494100 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv652681,nssv689532 M 2026 0 2 "" nsv831623 9 74487812 74657851 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447834,nssv1447833,nssv1447835 M 95 1 2 "" nsv6567 9 74491602 74536392 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8612 S 9 0 1 "" NA12156 nsv831624 9 74542162 74736980 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447837,nssv1447836 M 95 1 1 "" nsv528498 9 74544688 74547627 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705103 S 2026 0 1 "" nsv517373 9 74731714 74731876 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv674763,nssv665405,nssv656906,nssv682276,nssv667304,nssv651839,nssv658569,nssv678483,nssv682506 M 2026 0 9 "" nsv518879 9 74753244 74774792 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696336 S 2026 1 0 "" nsv415948 9 74753705 74753891 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434526 M 24 "" nsv518305 9 74787861 74795171 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695736 S 2026 0 1 "" nsv507518 9 74792393 74798393 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617793 S 4 1 0 "" CHM nsv509303 9 74807422 74816661 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618076 S 4 1 0 "" CHM nsv416909 9 74890723 74890772 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv435487 M 24 "" nsv416211 9 75228201 75228320 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434789 M 24 "" nsv821664 9 75236751 75237504 CNV Loss Sebat_et_al_2004 15273396 ROMA Custom Nimblegen photoprint 85000 probe ROMA oligo array nssv1421237,nssv1421238 M 31 0 2 "" nsv416828 9 75270752 75270752 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv435406 M 24 "" nsv6568 9 75424504 75455742 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8613 S 9 0 1 "" NA12156 nsv831626 9 75555887 75724060 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447838 S 95 0 1 "" nsv528032 9 75556054 75602582 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704563 S 2026 0 1 "" nsv526918 9 75560605 75561529 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703280 S 2026 0 1 "" nsv831627 9 75880688 76047223 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447840 S 95 0 1 "" esv33354 9 75901758 75971780 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97511 S 51 0 1 "" 21616 nsv437647 9 75971679 75972705 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467528 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19211 nsv6569 9 75972110 76005927 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5162 S 9 1 0 "" NA19129 nsv466422 9 76005124 76026076 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541970 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00797 nsv508552 9 76094467 76185880 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620026 S 4 0 1 "" NA15510 nsv521139 9 76132503 76133080 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697810 S 2026 1 0 "" nsv523103 9 76132503 76133577 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698799 S 2026 0 1 "" nsv526457 9 76152811 76154402 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702760 S 2026 0 1 "" nsv6570 9 76224536 76258657 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8614 S 9 1 0 "" NA12156 nsv520423 9 76276671 76294853 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv689821,nssv671339 M 2026 0 2 "" nsv437089 9 76346529 76369144 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv466970 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA12740 nsv442155 9 76351902 76354864 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv415505 9 76354067 76354382 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434083 M 24 "" nsv517178 9 76380457 76394200 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv654838,nssv652737,nssv669843,nssv659909,nssv670575,nssv679068,nssv653935,nssv692021,nssv683444,nssv677565,nssv668371,nssv677399,nssv655462,nssv666707 M 2026 0 14 "" nsv527438 9 76454882 76459796 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703878 S 2026 1 0 "" nsv510193 9 76466599 76472599 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622177,nssv621357,nssv618314,nssv624081 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 dgv2390e1 9 76595419 76903461 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv472,essv4064 M 271 0 0 "" NA18635 nsv6571 9 76708062 76740129 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6284 S 9 1 0 "" NA12156 nsv8526 9 76711430 76713624 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20473 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18504 essv5453 9 76731655 76903461 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18632 nsv8527 9 76776756 76779848 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21021,nssv21314,nssv18783,nssv19918,nssv23000,nssv21357,nssv17824 M 31 7 0 Samples from several populations that are part of the HapMap project. "" NA07048,NA10839,NA18517,NA18860,NA19132,NA19144,NA19221 nsv8528 9 76785038 76787927 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18516,nssv17432,nssv21344,nssv20503,nssv21387 M 31 0 5 Samples from several populations that are part of the HapMap project. "" NA07029,NA10863,NA18504,NA18517,NA19132 nsv831628 9 76785409 76927788 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447841 S 95 1 0 "" nsv442557 9 76786435 76788890 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv8529 9 76836891 76847187 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17965 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18980 nsv466423 9 76883511 76917370 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541971 S 1557 0 1 "" 1780862311_A nsv6572 9 76889014 76915888 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3726 S 9 1 0 "" NA12878 nsv6573 9 76997845 77010906 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3727 S 9 1 0 "" NA12878 dgv2391e1 9 76999952 77020098 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv24034,essv23093,esv1282,essv18009,essv25072,essv17863 M 271 0 0 "" NA10857,NA12043,NA12873,NA12878,NA12892 nsv442156 9 77000060 77006958 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv521364 9 77040443 77232014 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697974 S 2026 0 1 "" nsv831629 9 77343561 77509059 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447842 S 95 1 0 "" nsv6574 9 77654642 77691727 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8615 S 9 0 1 "" NA12156 nsv416999 9 77671872 77672529 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv435577 M 24 "" nsv507519 9 77783888 77789888 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617794 S 4 1 0 "" CHM nsv526255 9 77819314 77846080 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702527 S 2026 0 1 "" nsv831630 9 77849021 78032809 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447843 S 95 0 1 "" nsv831631 9 77905238 78073874 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447844 S 95 0 1 "" nsv510194 9 78064493 78070493 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618315,nssv621358 M 4 0 2 "" CHM,NA15510 nsv831632 9 78121343 78271771 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447845 S 95 1 0 "" nsv6575 9 78133902 78159791 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8616 S 9 1 0 "" NA12156 nsv521626 9 78162069 78260316 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698245 S 2026 0 1 "" nsv466425 9 78202322 78277445 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541972 S 1557 0 1 "" 1780862197_A nsv515900 9 78277445 78286963 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv655945,nssv665195,nssv677934 M 2026 0 3 "" nsv416134 9 78424897 78424897 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434712 M 24 "" nsv521768 9 78488749 78501015 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694535 S 2026 1 0 "" dgv2392e1 9 78658863 78703638 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1241,essv12047,essv13216,essv8561 M 271 0 0 "" NA18503,NA19116,NA19120 nsv416915 9 78662866 78662866 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv435493 M 24 "" nsv517750 9 78668093 78698583 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv653103,nssv685007 M 2026 0 2 "" nsv818707 9 78668093 78698583 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416654,nssv1416655 M 112 0 2 "" NA19116,NA19120 nsv442157 9 78668094 78698587 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv831633 9 78753980 78940453 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447846 S 95 0 1 "" nsv524858 9 78880842 78881500 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700862 S 2026 0 1 "" nsv521127 9 78880842 78882054 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697804 S 2026 0 1 "" nsv6577 9 78960870 78995065 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8617 S 9 1 0 "" NA12156 nsv520323 9 79001700 79003381 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697348 S 2026 1 0 "" nsv6578 9 79049557 79082562 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1788 S 9 1 0 "" NA18555 nsv510195 9 79174035 79180035 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621359 S 4 0 1 "" NA15510 nsv516194 9 79261906 79262468 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv660504,nssv686195,nssv684381,nssv678086,nssv666708 M 2026 0 5 "" nsv818708 9 79261906 79262468 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417544 S 112 0 1 "" NA18971 nsv831634 9 79274748 79434255 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447847 S 95 0 1 "" nsv525185 9 79373918 79375661 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701263 S 2026 0 1 "" nsv528040 9 79403581 79406687 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704572 S 2026 1 0 "" nsv831635 9 79711368 79883776 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447848 S 95 1 0 "" nsv6579 9 79795813 79829499 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5163 S 9 1 0 "" NA19129 nsv516724 9 79817780 79832278 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv670459,nssv691594 M 2026 0 2 "" nsv831637 9 80018969 80165067 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447849 S 95 1 0 "" nsv510196 9 80098396 80104396 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624082,nssv622178,nssv621360 M 4 0 3 "" NA10860,NA15510,NA18994 nsv524239 9 80193553 80194923 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700129 S 2026 0 1 "" nsv442158 9 80211945 80213949 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv508553 9 80480699 80521994 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617372 S 4 0 1 "" CHM nsv526226 9 80549747 80552781 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702492 S 2026 0 1 "" nsv8530 9 80594078 80595867 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21477 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19132 nsv821665 9 80597187 82137208 CNV Loss Sebat_et_al_2004 15273396 ROMA Custom Nimblegen photoprint 85000 probe ROMA oligo array nssv1421239 S 31 0 1 "" nsv416255 9 80614828 80614899 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434833 M 24 "" nsv507520 9 80644520 80650520 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620450,nssv617795,nssv621945 M 4 3 0 "" CHM,NA10860,NA15510 nsv466426 9 80715140 80753781 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541973 S 1557 1 0 "" NINDS_195 nsv416576 9 80742527 80742527 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv435154 M 24 "" nsv416441 9 80753270 80756372 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv435019 M 24 "" dgv2393e1 9 80822890 80931674 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv5317,esv280 M 271 0 0 "" NA18563 nsv8531 9 80877780 80880299 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18050,nssv18465,nssv21374,nssv18166,nssv19948 M 31 5 0 Samples from several populations that are part of the HapMap project. "" NA18517,NA18537,NA18552,NA18853,NA19144 nsv466427 9 81025721 81094772 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541974 S 1557 0 1 "" 1780846029_A nsv508554 9 81130706 81201225 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618856 S 4 0 1 "" NA10860 nsv6580 9 81163789 81204048 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8618 S 9 0 1 "" NA12156 nsv6581 9 81233003 81262402 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10673 S 9 1 0 "" NA18956 nsv522430 9 81235775 81239051 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705784 S 2026 0 1 "" nsv520040 9 81236678 81237418 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697191 S 2026 0 1 "" nsv528241 9 81256066 81257540 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704803 S 2026 1 0 "" nsv831638 9 81382613 81552238 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447852,nssv1447853 M 95 0 2 "" nsv8532 9 81439860 81442154 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18809 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19173 nsv521784 9 81445644 81452172 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694553 S 2026 1 0 "" nsv6582 9 81538040 81582806 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6285,nssv1789 M 9 0 2 "" NA12156,NA18555 nsv8533 9 81552817 81556599 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18546,nssv17576,nssv19978 M 31 3 0 Samples from several populations that are part of the HapMap project. "" NA10863,NA19007,NA19144 nsv525608 9 81553454 81556764 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701753 S 2026 0 1 "" nsv6583 9 81600001 81631814 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5164 S 9 1 0 "" NA19129 nsv522950 9 81685226 81687543 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698617 S 2026 0 1 "" nsv415865 9 81706641 81706972 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434443 M 24 "" nsv831639 9 81731102 81880705 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447854 S 95 0 1 "" nsv508555 9 81737253 81809582 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622613,nssv618857 M 4 0 2 "" NA10860,NA18994 nsv8534 9 81749264 81756167 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17462 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA07029 nsv8536 9 81760558 81793853 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17492 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA07029 nsv6584 9 81777425 81836006 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv812 S 9 0 1 "" NA19240 nsv8537 9 81832083 81840902 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17522 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA07029 nsv831640 9 81925512 82110089 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447855 S 95 0 1 "" nsv8538 9 82114963 82117216 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20008 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19144 nsv831641 9 82375115 82539143 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447856 S 95 1 0 "" nsv416042 9 82512072 82512125 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434620 M 24 "" nsv415973 9 82512353 82512406 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434551 M 24 "" nsv515920 9 82602458 82606781 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv672479,nssv688877,nssv655545,nssv657605,nssv701815,nssv681963,nssv665313 M 2026 0 7 "" nsv818709 9 82602458 82606781 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415771 S 112 0 1 "" NA12874 nsv442159 9 82606123 82613798 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv518664 9 82621240 82629477 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696114 S 2026 0 1 "" nsv525737 9 82719742 82723240 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701902 S 2026 0 1 "" nsv415968 9 82776426 82776556 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434546 M 24 "" nsv6585 9 82796213 82841043 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8619 S 9 0 1 "" NA12156 nsv831642 9 82908979 83046892 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447857 S 95 1 0 "" nsv831643 9 82908985 83028544 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447859,nssv1447858,nssv1447863,nssv1447860,nssv1447864,nssv1447861 M 95 0 6 "" nsv510197 9 82993168 82999168 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624083 S 4 0 1 "" NA18994 nsv818710 9 83063866 83064662 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416769 S 112 0 1 "" NA19159 nsv6586 9 83099382 83144366 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8620 S 9 0 1 "" NA12156 nsv6588 9 83104993 83138886 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5165 S 9 1 0 "" NA19129 nsv6589 9 83252096 83285980 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8621 S 9 1 0 "" NA12156 nsv416790 9 83390545 83391359 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv435368 M 24 "" nsv516587 9 83455673 83485319 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv669398,nssv661508 M 2026 0 2 "" nsv469859 9 83627706 83817511 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649880 M 265 0 0 Samples from several populations that are part of the HapMap project. "" dgv2394e1 9 83643578 83833156 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv333,essv17711 M 271 0 0 "" NA12872 nsv6590 9 83665157 83709996 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8622 S 9 0 1 "" NA12156 nsv8539 9 83676131 83678976 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20191 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19240 nsv8540 9 83688141 83699923 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16361 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA12872 nsv6591 9 83688348 83722864 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2813 S 9 1 0 "" NA18555 nsv8541 9 83699277 83823312 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16391 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA12872 nsv438108 9 83718140 83771760 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470105 S 269 0 1 Samples from several populations that are part of the HapMap project. "" NA12872 nsv442559 9 83744009 83747097 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv831644 9 83763864 83933949 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447865 S 95 1 0 "" nsv8542 9 83978854 84304464 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17995,nssv18917,nssv17606,nssv18495 M 31 0 4 Samples from several populations that are part of the HapMap project. "" NA18537,NA18563,NA18980,NA19007 dgv488n21 9 84086987 84096590 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv525533,nsv515888 M 2026 0 4 "" nsv525150 9 84099627 84100362 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701220 S 2026 0 1 "" nsv516025 9 84099679 84110047 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv674670,nssv668747,nssv661552,nssv679347,nssv697797,nssv701618,nssv663770,nssv689656,nssv687711,nssv654978,nssv665789 M 2026 0 11 "" nsv520182 9 84243374 84336603 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697267 S 2026 1 0 "" nsv524707 9 84358936 84391915 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700690 S 2026 0 1 "" dgv489n21 9 84358936 84408777 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv521509,nsv517882 M 2026 2 0 "" nsv466429 9 84469684 84505449 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541976 S 1557 1 0 "" NINDS_196 nsv520969 9 84469684 84505449 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv678959,nssv681496 M 2026 2 0 "" nsv516928 9 84955977 84965139 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv692480,nssv685174,nssv696746,nssv676097,nssv662915,nssv655018 M 2026 6 0 "" nsv6592 9 85020267 85041195 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8623 S 9 0 1 "" NA12156 nsv524286 9 85028736 85037067 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700186 S 2026 1 0 "" nsv416061 9 85130960 85131266 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434639 M 24 "" nsv521920 9 85147012 85148082 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694690 S 2026 0 1 "" dgv2395e1 9 85353708 85507991 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv366,essv11447 M 271 0 0 "" NA18857 nsv524134 9 85388100 85689618 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700012 S 2026 0 1 "" nsv6593 9 85430298 85456536 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8624 S 9 1 0 "" NA12156 nsv831645 9 85432066 85610539 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447866 S 95 0 1 "" nsv525362 9 85529014 85530295 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701481 S 2026 0 1 "" nsv831646 9 85604878 85791040 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447867 S 95 0 1 "" nsv519890 9 85814568 85826816 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv659321,nssv686125 M 2026 0 2 "" nsv510198 9 85897969 85903969 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622179 S 4 0 1 "" NA10860 nsv6594 9 85927113 85962481 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv813 S 9 1 0 "" NA19240 nsv6595 9 86002333 86015450 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2814 S 9 1 0 "" NA18555 nsv518696 9 86164942 86181867 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696147 S 2026 0 1 "" nsv416011 9 86337861 86338009 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434589 M 24 "" nsv415982 9 86337861 86344316 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434560 M 24 "" nsv6596 9 86356094 86391750 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8625 S 9 0 1 "" NA12156 nsv519025 9 86416529 86417844 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696494 S 2026 0 1 "" nsv517337 9 86534985 86535140 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv693811,nssv681924,nssv651763,nssv686855,nssv664542,nssv669366,nssv664964,nssv680809 M 2026 0 8 "" nsv522077 9 86649401 86651723 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694849 S 2026 0 1 "" nsv515532 9 86677554 86683401 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv673700,nssv663843 M 2026 0 2 "" nsv6597 9 86809013 86843486 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2815 S 9 1 0 "" NA18555 nsv509304 9 86836317 86845455 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620923 S 4 1 0 "" NA15510 nsv466430 9 86899559 87007051 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541977 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00955 nsv416816 9 87247072 87247072 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv435394 M 24 "" nsv524997 9 87247987 87248674 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701028 S 2026 0 1 "" dgv2396e1 9 87248281 87654534 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv297,essv11619 M 271 0 0 "" NA19154 nsv8543 9 87294771 87297357 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21507 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19132 nsv416811 9 87303513 87311306 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv435389 M 24 "" nsv8544 9 87321647 87331765 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23028 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19221 nsv8545 9 87492897 87495115 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20532 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18502 nsv8548 9 87615588 87618754 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17636,nssv17854 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA10839,NA19007 nsv518978 9 87685240 87699397 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694294 S 2026 0 1 "" nsv6599 9 87739616 87786082 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv814,nssv815,nssv10674,nssv6286,nssv1790 M 9 4 0 "" NA12156,NA18555,NA18956,NA19240 nsv6600 9 87744454 87767010 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5166 S 9 0 1 "" NA19129 nsv509305 9 87745219 87787995 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623560 S 4 1 0 "" NA18994 nsv6601 9 87831898 87845029 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8627 S 9 0 1 "" NA12156 nsv510199 9 87900336 87906336 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621361 S 4 0 1 "" NA15510 esv33467 9 87911499 87918815 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99566 S 51 1 0 "" 22335 nsv509306 9 87929980 88013171 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619550 S 4 1 0 "" NA10860 nsv521551 9 87951000 87985984 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698166 S 2026 0 1 "" nsv6602 9 87984547 88015774 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv816 S 9 1 0 "" NA19240 nsv6603 9 88035309 88063252 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5167,nssv1791,nssv9472 M 9 3 0 "" NA18517,NA18555,NA19129 nsv508556 9 88041281 88057944 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620027 S 4 0 1 "" NA15510 nsv509307 9 88041281 88057944 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619551,nssv623561 M 4 2 0 "" NA10860,NA18994 nsv517482 9 88046742 88050975 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv690189,nssv674245,nssv682858,nssv679313,nssv679838,nssv691957,nssv652154,nssv675426,nssv678180 M 2026 0 9 "" nsv6604 9 88086575 88132681 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5168,nssv6287 M 9 0 2 "" NA12156,NA19129 nsv520042 9 88124738 88129181 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697192 S 2026 0 1 "" nsv416462 9 88183067 88184564 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv435040 M 24 "" nsv831649 9 88184775 88363914 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447868 S 95 0 1 "" nsv466432 9 88272799 88339052 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541978 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01329 nsv6605 9 88352658 88387539 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv817 S 9 1 0 "" NA19240 nsv6606 9 88478445 88508050 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8628,nssv3729 M 9 2 0 "" NA12156,NA12878 nsv509308 9 88494214 88527603 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623562,nssv619552,nssv620924 M 4 3 0 "" NA10860,NA15510,NA18994 nsv831650 9 88581015 88724473 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447869 S 95 1 0 "" nsv516062 9 88613290 88615775 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv658160,nssv693975,nssv665945,nssv705785,nssv672152 M 2026 1 4 "" nsv6607 9 88707127 88740499 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8629 S 9 1 0 "" NA12156 nsv523702 9 88750094 88750414 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699510 S 2026 0 1 "" nsv523608 9 88776410 88792588 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699402 S 2026 0 1 "" esv33575 9 88793150 88793649 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101532,essv98838,essv101236,essv95053,essv97368,essv93501,essv94272 M 51 0 7 "" 21603,21606,21618,21721,21879,22128,22394 nsv831651 9 88947800 89164445 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447870 S 95 1 0 "" nsv6608 9 88988707 89033810 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8630 S 9 0 1 "" NA12156 nsv517495 9 89252025 89304388 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv669291,nssv699273,nssv705978,nssv652189,nssv669587,nssv687647,nssv686773,nssv676888,nssv674112 M 2026 0 9 "" nsv510200 9 89265970 89271970 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618316 S 4 0 1 "" CHM nsv415790 9 89316352 89316447 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434368 M 24 "" esv33568 9 89383530 89384253 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv96958,essv97167 M 51 2 0 "" 21817,22075 nsv469563 9 89389715 89568288 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649675 M 265 0 0 Samples from several populations that are part of the HapMap project. "" nsv471662 9 89389716 89568288 CNV Gain+Loss Sharp et al 2005 15918152 BAC_aCGH,FISH Eichler Segmental Duplication BAC array nssv549311,nssv549310 M 48 1 1 "" JK1688,NA17059 esv32654 9 89393851 89397388 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101159,essv96928,essv97215,essv99648 M 51 0 4 "" 21618,21817,22075,22217 nsv8549 9 89404572 89408685 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17032,nssv18525,nssv18025,nssv18196,nssv21563,nssv17544,nssv21051 M 31 0 7 Samples from several populations that are part of the HapMap project. "" NA18537,NA18552,NA18860,NA18942,NA18972,NA18975,NA18980 esv32845 9 89405331 89407383 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101260,essv96927,essv97266,essv99605 M 51 0 4 "" 21618,21817,22075,22217 nsv8550 9 89412804 89433140 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20533,nssv16805,nssv21593 M 31 3 0 Samples from several populations that are part of the HapMap project. "" NA10847,NA18504,NA18972 esv33786 9 89414326 89421347 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98658 S 51 0 1 "" 21606 nsv509309 9 89428908 89521571 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619553 S 4 1 0 "" NA10860 nsv466433 9 89491418 89520428 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541979 S 1557 0 1 "" 1780862093_A nsv466434 9 89520428 89569478 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541980 S 1557 0 1 "" 1780862345_A nsv415742 9 90004237 90004650 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434320 M 24 "" nsv528155 9 90186097 90232271 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704703 S 2026 1 0 "" nsv516680 9 90196498 90218154 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703021,nssv678979,nssv670114,nssv659095 M 2026 1 3 "" nsv6610 9 90507962 90552900 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5169 S 9 0 1 "" NA19129 nsv526632 9 90521228 90523085 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702954 S 2026 0 1 "" nsv523018 9 90546185 90548448 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698694 S 2026 0 1 "" nsv831652 9 90606966 90776478 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447871 S 95 1 0 "" dgv265n6 9 90718139 90723516 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv416141,nsv416495 M 24 "" nsv416826 9 90768290 90777877 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv435404 M 24 "" nsv523562 9 90870965 90879572 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699343 S 2026 0 1 "" nsv523129 9 91103130 91105546 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698832 S 2026 0 1 "" nsv818712 9 91227639 91233837 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417234 S 112 1 0 "" NA18576 nsv438109 9 91475614 91480313 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470106 S 269 0 1 Samples from several populations that are part of the HapMap project. "" NA12760 nsv516473 9 91475614 91485007 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv685012,nssv669617,nssv692663,nssv681947,nssv662852,nssv686668,nssv674227,nssv661936,nssv676206,nssv668573,nssv679704,nssv671340,nssv674398,nssv660762,nssv693322,nssv679181,nssv682736,nssv677011,nssv683574,nssv686789,nssv689475,nssv668711,nssv654618,nssv667814,nssv669231,nssv657543,nssv678464,nssv678484,nssv690203,nssv652964,nssv667514,nssv655657,nssv685803,nssv652316,nssv658105,nssv660086,nssv679555,nssv689822,nssv677349,nssv680867,nssv655780,nssv651878,nssv656874,nssv657767 M 2026 0 44 "" nsv818713 9 91475614 91485639 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417926 S 112 0 1 "" NA06993 nsv442160 9 91481823 91482996 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv6611 9 91486285 91505868 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3730 S 9 1 0 "" NA12878 dgv490n21 9 91536269 91555973 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv516266,nsv521046 M 2026 0 5 "" nsv415988 9 91556370 91556423 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434566 M 24 "" nsv6612 9 91570199 91615293 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8631 S 9 0 1 "" NA12156 nsv6613 9 91575850 91608200 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10675 S 9 1 0 "" NA18956 nsv523940 9 91626119 91653308 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699786 S 2026 0 1 "" nsv518372 9 91637681 91685463 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695799 S 2026 0 1 "" nsv6614 9 91650904 91689640 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8632 S 9 0 1 "" NA12156 nsv831653 9 91772009 91947097 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447872 S 95 1 0 "" nsv523871 9 91776334 91776663 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699712 S 2026 1 0 "" nsv6615 9 92066646 92100388 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8633 S 9 1 0 "" NA12156 nsv527206 9 92363767 92364537 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703606 S 2026 0 1 "" nsv6616 9 92594489 92640946 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2816,nssv818 M 9 2 0 "" NA18555,NA19240 nsv831654 9 92622475 92800516 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447874 S 95 1 0 "" nsv525363 9 92677755 92684622 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701482 S 2026 0 1 "" nsv526296 9 92787747 93109947 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702577 S 2026 0 1 "" nsv6617 9 92855705 92889274 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8634 S 9 1 0 "" NA12156 nsv521136 9 92862222 92878426 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv693087,nssv695612,nssv682722 M 2026 0 3 "" esv32996 9 92914038 92917351 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98813 S 51 1 0 "" 21606 nsv509310 9 93035654 93090832 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619554 S 4 1 0 "" NA10860 nsv415836 9 93036875 93037536 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434414 M 24 "" nsv415527 9 93040422 93041026 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434105 M 24 "" nsv415569 9 93078785 93078863 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434147 M 24 "" nsv509311 9 93422392 93538572 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619555 S 4 1 0 "" NA10860 nsv519449 9 93461655 93474984 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv673359,nssv656224,nssv672256 M 2026 0 3 "" nsv415728 9 93549910 93551019 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434306 M 24 "" nsv6618 9 93575487 93583884 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1792 S 9 0 1 "" NA18555 nsv6619 9 93639723 93672990 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8635 S 9 1 0 "" NA12156 nsv416501 9 93713811 93713811 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv435079 M 24 "" nsv415976 9 93713848 93713848 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434554 M 24 "" nsv509312 9 93721000 93804455 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619556 S 4 1 0 "" NA10860 nsv415390 9 93809901 93810152 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv433968 M 24 "" nsv507521 9 93893316 93899316 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621946,nssv620451 M 4 2 0 "" NA10860,NA15510 nsv831655 9 93913597 94121564 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447875,nssv1447893,nssv1447878,nssv1447877,nssv1447879,nssv1447881,nssv1447880,nssv1447882,nssv1447883,nssv1447887,nssv1447885,nssv1447886,nssv1447892,nssv1447888,nssv1447891,nssv1447890,nssv1447889,nssv1447876 M 95 18 0 "" nsv6621 9 94055738 94062065 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3731 S 9 1 0 "" NA12878 nsv482131 9 94160033 94170481 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558492 S 1 1 0 "" KB1 esv33917 9 94265147 94295767 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv96492,essv99327,essv100173 M 51 3 0 "" 22261,22275,22286 nsv415866 9 94292345 94294985 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434444 M 24 "" nsv525298 9 94369138 94392139 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701404 S 2026 0 1 "" nsv521698 9 94412830 94417776 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698320 S 2026 0 1 "" nsv466436 9 94423175 94448704 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541981 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00897 nsv415436 9 94466972 94467350 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434014 M 24 "" nsv517074 9 94542990 94543936 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv653575,nssv671735 M 2026 0 2 "" nsv831656 9 94911106 95069535 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447894 S 95 0 1 "" nsv831657 9 95038829 95284324 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447896 S 95 0 1 "" nsv831658 9 95232526 95421733 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447898,nssv1447897 M 95 2 0 "" nsv415659 9 95345570 95345898 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434237 M 24 "" nsv416250 9 95528438 95532119 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434828 M 24 "" nsv524323 9 95532348 95533235 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700227 S 2026 0 1 "" nsv524001 9 95636449 95638399 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699861 S 2026 0 1 "" nsv524894 9 95716985 95719799 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700900 S 2026 0 1 "" nsv524266 9 95860161 95883829 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700163 S 2026 0 1 "" nsv6622 9 95933206 95974410 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5170,nssv3732 M 9 2 0 "" NA12878,NA19129 nsv466437 9 96002354 96016159 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541982 S 1557 1 0 "" NINDS_158 nsv6623 9 96107363 96141920 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv820 S 9 1 0 "" NA19240 nsv416131 9 96266416 96266416 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434709 M 24 "" nsv522838 9 96370729 96449923 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698490 S 2026 0 1 "" nsv415660 9 96392968 96395197 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434238 M 24 "" nsv416110 9 96520489 96521797 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434688 M 24 "" nsv831660 9 96564613 96751635 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447899 S 95 1 0 "" nsv520001 9 96612989 96874680 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv683518,nssv660024,nssv673014,nssv693976,nssv660577 M 2026 0 5 "" nsv6624 9 96628342 96673523 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8636 S 9 0 1 "" NA12156 nsv831661 9 96691523 96880147 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447900,nssv1447902,nssv1447901 M 95 0 3 "" nsv442560 9 96739934 96768895 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv6625 9 96801780 96836822 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv821 S 9 1 0 "" NA19240 nsv831662 9 96832076 97018786 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447903 S 95 1 0 "" nsv6626 9 96930831 96937083 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8637 S 9 0 1 "" NA12156 nsv415491 9 97012830 97017477 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434069 M 24 "" nsv415696 9 97253005 97253116 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434274 M 24 "" nsv6627 9 97655813 97700589 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8638 S 9 0 1 "" NA12156 nsv507522 9 97683699 97689699 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623075,nssv620452 M 4 2 0 "" NA15510,NA18994 nsv525113 9 97749354 97766370 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701175 S 2026 0 1 "" nsv524282 9 97756721 97764312 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700181 S 2026 0 1 "" nsv416479 9 97840614 97840943 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv435057 M 24 "" nsv6628 9 97920224 97953912 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8639 S 9 1 0 "" NA12156 nsv520067 9 98006716 98058097 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697204 S 2026 1 0 "" nsv831663 9 98020603 98189047 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447904 S 95 0 1 "" nsv831664 9 98104417 98285192 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447905,nssv1447909,nssv1447907,nssv1447908 M 95 2 2 "" nsv519818 9 98104442 98171871 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697067 S 2026 1 0 "" nsv831665 9 98249616 98447247 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447913,nssv1447911,nssv1447912,nssv1447910 M 95 4 0 "" nsv415967 9 98269602 98269661 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434545 M 24 "" nsv6629 9 98290872 98324537 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8640 S 9 1 0 "" NA12156 nsv6630 9 98315879 98346904 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8641 S 9 0 1 "" NA12156 nsv6633 9 98387926 98422366 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8642 S 9 0 1 "" NA12156 nsv415863 9 98427541 98427871 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434441 M 24 "" nsv524087 9 98435179 98436218 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699958 S 2026 0 1 "" nsv466440 9 98435179 98447563 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541984 S 1557 0 1 "" NINDS_69 nsv522461 9 98436070 98436218 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705825 S 2026 0 1 "" nsv466441 9 98442388 98499387 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541985 S 1557 0 1 "" 1780854419_A nsv6634 9 98697871 98731759 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8643 S 9 1 0 "" NA12156 nsv6635 9 98807812 98852808 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8644 S 9 0 1 "" NA12156 nsv528933 9 98864332 98868077 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705624 S 2026 0 1 "" nsv466442 9 98868077 98895954 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541986 S 1557 0 1 "" NINDS_198 nsv831666 9 98954540 99098245 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447914,nssv1447915 M 95 2 0 "" nsv525784 9 99116468 99117525 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701960 S 2026 0 1 "" nsv520193 9 99117525 99118598 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv681753,nssv661590 M 2026 0 2 "" nsv526378 9 99124699 99135612 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702674 S 2026 1 0 "" nsv831667 9 99147602 99365246 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447916 S 95 1 0 "" nsv527165 9 99274476 99293724 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703559 S 2026 0 1 "" nsv6636 9 99277059 99322159 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8646 S 9 0 1 "" NA12156 nsv6637 9 99332653 99359817 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1793 S 9 1 0 "" NA18555 nsv6638 9 99390567 99425104 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2817 S 9 1 0 "" NA18555 nsv522018 9 99448096 99466261 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694119 S 2026 0 1 "" nsv528025 9 99619941 99693227 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704554 S 2026 1 0 "" nsv831668 9 99647724 99826848 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447919,nssv1447918,nssv1447920 M 95 2 1 "" nsv507523 9 100148159 100154159 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621947,nssv623076,nssv620453 M 4 3 0 "" NA10860,NA15510,NA18994 nsv6639 9 100363072 100392006 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3733 S 9 1 0 "" NA12878 nsv518402 9 100504836 100507855 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695832 S 2026 1 0 "" nsv515570 9 100505857 100506151 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv684432,nssv663614,nssv667931,nssv663934 M 2026 4 0 "" nsv6640 9 100570382 100615208 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8647 S 9 0 1 "" NA12156 nsv516284 9 100722332 100728397 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv684060,nssv667334 M 2026 0 2 "" nsv831669 9 100788680 100957677 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447921 S 95 1 0 "" nsv831671 9 100937662 101100371 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447922 S 95 1 0 "" nsv466443 9 100974716 101002740 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541987 S 1557 0 1 "" 1782681287_A nsv6641 9 101185434 101206938 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5172 S 9 1 0 "" NA19129 nsv509314 9 101196445 101210351 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619557 S 4 1 0 "" NA10860 nsv523287 9 101270947 101282358 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699026 S 2026 0 1 "" nsv415685 9 101299255 101299937 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434263 M 24 "" nsv831672 9 101380310 101560404 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447923 S 95 1 0 "" nsv527229 9 101450592 101451291 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703629 S 2026 0 1 "" nsv6642 9 101465514 101478292 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8648 S 9 0 1 "" NA12156 nsv415939 9 101501196 101501253 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434517 M 24 "" dgv266n6 9 101523517 101524300 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv415664,nsv415719 M 24 "" nsv516211 9 101655585 101664019 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv685506,nssv666841 M 2026 0 2 "" essv25191 9 101717505 101802243 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA11840 dgv2397e1 9 101717505 101905114 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv577,essv16368 M 271 0 0 "" NA19193 essv19715 9 101720948 101844439 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12236 nsv521116 9 101722521 101984009 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv688920,nssv700677,nssv682410,nssv699204 M 2026 1 3 "" essv17411 9 101759341 101828415 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12760 nsv8551 9 101763269 101767465 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16549 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18572 nsv6644 9 101785557 101824248 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10677,nssv3734,nssv1794 M 9 0 3 "" NA12878,NA18555,NA18956 dgv2398e1 9 101788561 101822523 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv3846,essv2753,essv4541,essv2401,essv2137,essv5975,essv500,essv7054,essv3626,essv6512,essv18873,essv21107,essv6471,essv18025,essv19135,essv19360,essv5960,essv5009,essv21635,essv994,essv4214 M 271 0 0 "" NA07019,NA07029,NA10854,NA12761,NA12812,NA12878,NA18552,NA18566,NA18571,NA18572,NA18577,NA18609,NA18612,NA18637,NA18952,NA18953,NA18964,NA18966,NA18976,NA18978,NA19000 nsv8552 9 101788588 101792166 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16451,nssv20563 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA12872,NA18504 nsv8553 9 101789706 101806039 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18576,nssv18318,nssv17574,nssv16780,nssv18226,nssv18813,nssv16579,nssv17552,nssv17884,nssv19298 M 31 0 10 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10863,NA12155,NA12802,NA18552,NA18564,NA18572,NA18975 dgv2399e1 9 101789718 101802243 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1057,essv4316,essv21614,essv6853,essv7236,essv18534,essv21472,essv23294 M 271 0 0 "" NA07348,NA10830,NA12006,NA12763,NA18558,NA18564,NA18635,NA18975 dgv2400e1 9 101789718 101836373 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv21747,essv20552,essv20841,essv24633,essv6097,essv3246,essv24108,essv22799,essv23631,essv24621,essv3606 M 271 0 0 "" NA07048,NA07055,NA10846,NA10861,NA11829,NA11995,NA12753,NA12875,NA18573,NA18967,NA18969 dgv2401e1 9 101789718 101862268 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv179,essv5869,essv6485,essv3677,essv18002 M 271 0 0 "" NA12005,NA18555,NA18636,NA18943,NA18994 dgv2402e1 9 101796515 101802243 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv3444,essv20877,essv5654,essv626,essv21597,essv19726,essv2720,essv7632,essv20979,essv6077,essv23312,essv20453,essv1535,essv22268,essv25110,essv733,essv24342,essv24197,essv25154,essv3325,essv25070,essv5624,essv1656,essv20694,essv19115 M 271 0 0 "" NA06994,NA07056,NA10839,NA10859,NA10863,NA11839,NA11992,NA12044,NA12145,NA12155,NA12264,NA12802,NA12814,NA12892,NA18526,NA18547,NA18579,NA18621,NA18944,NA18948,NA18956,NA18961,NA18998,NA19003,NA19012 nsv821666 9 101798113 101799613 CNV Loss Sebat_et_al_2004 15273396 ROMA Custom Nimblegen photoprint 85000 probe ROMA oligo array nssv1421240 S 31 0 1 "" esv2422433 9 101816384 101958360 CNV Deletion Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161477 S 181 0 1 "" ND04275 nsv831673 9 101878739 102017831 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447925,nssv1447924,nssv1447926 M 95 1 2 "" nsv466444 9 101891281 101920074 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541988 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00417 nsv8554 9 101902324 101957457 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16609,nssv17062 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18572,NA18942 nsv831674 9 101907274 102090745 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447927 S 95 0 1 "" dgv941n27 9 101917091 101938368 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv466446,nsv466445 M 1557 0 2 "" 1780862530_A,HGDP01237 dgv2403e1 9 101918912 101963391 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv6506,esv1185 M 271 0 0 "" NA18572 esv2752272 9 101918912 102041415 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6984873,essv6984874,essv6989459,essv6990035 M 771 0 1 "" SPC_188 nsv438110 9 101933002 101943351 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470107 S 269 0 1 Samples from several populations that are part of the HapMap project. "" NA18572 nsv466448 9 101982429 102021741 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541991 S 1557 0 1 "" NINDS_145 nsv520809 9 101983787 102001267 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697624 S 2026 0 1 "" nsv6645 9 102016140 102047340 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6288 S 9 1 0 "" NA12156 nsv466449 9 102017668 102057108 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541992 S 1557 0 1 "" NINDS_211 nsv521084 9 102017668 102057108 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv693683,nssv700775,nssv681543,nssv692479 M 2026 0 4 "" nsv507524 9 102033207 102039207 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623077,nssv620454,nssv617796 M 4 3 0 "" CHM,NA15510,NA18994 nsv831675 9 102093389 102264216 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447929 S 95 0 1 "" nsv526397 9 102098635 102104323 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702696 S 2026 0 1 "" nsv523870 9 102135141 102137976 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699711 S 2026 0 1 "" nsv466451 9 102156955 102207263 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541994 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00003 nsv524901 9 102204387 102207263 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700911 S 2026 1 0 "" nsv526618 9 102214696 102218461 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702938 S 2026 0 1 "" nsv528230 9 102298511 102301218 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704792 S 2026 0 1 "" nsv520177 9 102298511 102316725 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697265 S 2026 0 1 "" nsv524599 9 102534979 102544109 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700560 S 2026 0 1 "" nsv6646 9 102578883 102610271 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5173 S 9 1 0 "" NA19129 nsv518976 9 102582692 102583261 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696444 S 2026 0 1 "" nsv525658 9 102583261 102583332 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701813 S 2026 0 1 "" dgv942n27 9 102626048 102672935 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv466454,nsv466453 M 1557 0 2 "" NINDS_142,NINDS_147 nsv415353 9 102673774 102673774 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv433931 M 24 "" nsv6647 9 102691897 102737431 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6290 S 9 0 1 "" NA12156 nsv507525 9 102713865 102719865 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620455 S 4 1 0 "" NA15510 nsv466455 9 102787539 103078751 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541997 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00533 nsv516844 9 102797645 103078751 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv654396,nssv699852,nssv682089,nssv706068,nssv694078,nssv695702,nssv695601 M 2026 5 2 "" nsv415530 9 102856522 102856601 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434108 M 24 "" nsv416206 9 102856916 102856990 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434784 M 24 "" nsv416586 9 102913892 102913892 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv435164 M 24 "" nsv6648 9 102939511 102984233 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8649 S 9 0 1 "" NA12156 nsv416783 9 103015854 103015903 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv435361 M 24 "" nsv466456 9 103036478 103058779 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541998 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01268 nsv442161 9 103050465 103063361 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv818714 9 103054309 103063335 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416955,nssv1416954 M 112 2 0 "" NA19137,NA19139 nsv526470 9 103166907 103181563 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702774 S 2026 1 0 "" nsv466457 9 103318480 103383808 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv541999 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00599 dgv491n21 9 103458023 103469242 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv518496,nsv525034 M 2026 0 2 "" nsv466458 9 103458023 103469242 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542000 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01279 nsv516454 9 103480433 103511047 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv656222,nssv672167,nssv689254,nssv673958,nssv668501 M 2026 0 5 "" nsv466459 9 103557051 103638772 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542001 S 1557 0 1 "" 1782681096_A nsv508557 9 103654905 103688275 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618858 S 4 0 1 "" NA10860 nsv518462 9 103707510 103716588 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695899 S 2026 0 1 "" nsv831676 9 103743030 103954012 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447930 S 95 1 0 "" nsv416629 9 103795238 103795365 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv435207 M 24 "" nsv437090 9 103858362 103867936 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv466971 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA10839 nsv8555 9 103859589 103867035 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17914 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA10839 dgv2404e1 9 103893020 103919961 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv989,essv8902 M 271 0 0 "" NA19171 nsv516897 9 103893020 103930406 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv681136,nssv690026,nssv661459,nssv654743,nssv673263 M 2026 0 5 "" nsv818715 9 103893020 103930406 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416577 S 112 0 1 "" NA19171 nsv6649 9 104048099 104070760 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3735 S 9 1 0 "" NA12878 nsv466462 9 104360123 104380167 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542003 S 1557 0 1 "" 1780854566_A nsv831677 9 104361133 104529894 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447931 S 95 1 0 "" dgv492n21 9 104371556 104373576 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv527720,nsv527377 M 2026 0 2 "" nsv517609 9 104429195 104444137 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv658779,nssv693082,nssv698453,nssv666808,nssv658217,nssv667016,nssv653399,nssv678114,nssv689781,nssv675743,nssv684726,nssv667763,nssv689228,nssv652498,nssv663914,nssv693000,nssv689300,nssv675656,nssv678656,nssv699019,nssv656424,nssv691433,nssv661890,nssv685718,nssv684586,nssv673743,nssv663996,nssv675893,nssv664075,nssv661733,nssv679290,nssv687339,nssv672821,nssv679458,nssv668827,nssv682077,nssv670503,nssv652679,nssv680477 M 2026 1 38 "" dgv2405e1 9 104439357 104452133 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv7877,essv3655,essv17225,essv959,essv11358,essv15448,essv1719 M 271 0 0 "" NA18857,NA18858,NA18968,NA18981,NA18991,NA19140,NA19206 dgv2406e1 9 104439357 104463949 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1239,essv14251 M 271 0 0 "" NA19100 dgv2407e1 9 104439521 104445674 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv13995,essv12426,essv15957,essv2129,essv8910,essv3424 M 271 0 0 "" NA18956,NA18978,NA19098,NA19142,NA19152,NA19171 nsv8556 9 104440221 104449604 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21111,nssv18839 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18860,NA19173 dgv150n17 9 104441154 104450219 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis nsv437648,nsv437649 M 60 0 2 "" NA19154,NA19205 dgv2408e1 9 104443405 104452044 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv12121,essv15904,essv8716 M 271 0 0 "" NA19173,NA19200,NA19205 nsv442561 9 104443543 104446338 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv818716 9 104443976 104444137 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417603,nssv1415906,nssv1415917,nssv1416579,nssv1416578 M 112 0 5 "" NA18978,NA19140,NA19142,NA19171,NA19173 nsv524181 9 104443976 104453484 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700063 S 2026 0 1 "" nsv438111 9 104445525 104446026 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470110,nssv470112,nssv470109,nssv470111 M 269 0 4 Samples from several populations that are part of the HapMap project. "" NA19152,NA19154,NA19204,NA19205 nsv516313 9 104562968 104564881 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv692861,nssv667512,nssv685988,nssv686047,nssv672839,nssv654556,nssv662995,nssv691955 M 2026 0 8 "" nsv818717 9 104562968 104564881 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417048,nssv1417047 M 112 0 2 "" NA07000,NA07029 nsv521783 9 104599004 104611872 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694551 S 2026 0 1 "" nsv6650 9 104641892 104687063 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8650 S 9 0 1 "" NA12156 nsv466471 9 104691382 104756495 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542004 S 1557 0 1 "" 1780862197_A nsv44 9 104709775 104727682 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv44 S 1 1 0 "" NA15510 nsv6651 9 104709775 104727682 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv11203 S 9 1 0 "" NA15510 nsv509315 9 104709896 104739135 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620925 S 4 1 0 "" NA15510 nsv6652 9 104748335 104793073 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8651 S 9 0 1 "" NA12156 nsv528797 9 104761567 104762677 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705470 S 2026 0 1 "" nsv524600 9 104762677 104763831 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700561 S 2026 1 0 "" nsv416809 9 104864575 104864625 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv435387 M 24 "" dgv493n21 9 104876103 104878597 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv522636,nsv527230 M 2026 0 2 "" nsv520267 9 104878597 104881777 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv687710,nssv675138,nssv687834,nssv662261 M 2026 0 4 "" nsv524391 9 104906202 104907466 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700308 S 2026 0 1 "" nsv509316 9 104933858 104933858 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620926 S 4 1 0 "" NA15510 nsv831678 9 105003077 105192368 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447932,nssv1447933,nssv1447934 M 95 2 1 "" nsv523889 9 105059876 105061126 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699732 S 2026 0 1 "" nsv437650 9 105067752 105074184 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467531 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19208 nsv416298 9 105375277 105383124 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434876 M 24 "" nsv519023 9 105451104 105534300 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694299 S 2026 1 0 "" nsv518522 9 105506290 105506339 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695963 S 2026 1 0 "" nsv6653 9 105522387 105576903 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5174,nssv9768 M 9 2 0 "" NA18507,NA19129 nsv508558 9 105615670 105690642 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618860 S 4 0 1 "" NA10860 nsv831679 9 105682667 105864902 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447935 S 95 1 0 "" nsv6655 9 105698984 105702955 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv822 S 9 1 0 "" NA19240 nsv6656 9 105872435 105907220 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3736 S 9 1 0 "" NA12878 nsv525441 9 105964095 105973337 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701569 S 2026 0 1 "" nsv528178 9 106104675 106122127 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704728 S 2026 1 0 "" dgv2409e1 9 106230185 106435633 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv768,essv23014 M 271 0 0 "" NA12812 essv19134 9 106263491 106375395 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12812 nsv818718 9 106264150 106370752 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416082 S 112 0 1 "" NA12812 nsv524973 9 106377595 106389159 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700998 S 2026 0 1 "" nsv521586 9 106472537 106474168 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698203 S 2026 0 1 "" nsv831680 9 106733151 106928382 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447936 S 95 0 1 "" nsv466476 9 106893002 106919045 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542006 S 1557 0 1 "" 1780854326_A nsv831682 9 107016736 107155008 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447938,nssv1447937 M 95 2 0 "" nsv519264 9 107022720 107034367 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696755 S 2026 0 1 "" nsv466477 9 107040108 107066634 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542007 S 1557 0 1 "" 1780854599_A nsv508560 9 107086045 107140094 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622615,nssv618861,nssv620028 M 4 0 3 "" NA10860,NA15510,NA18994 nsv415896 9 107113010 107115012 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434474 M 24 "" nsv519266 9 107129032 107164810 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696756 S 2026 1 0 "" nsv523323 9 107234861 107234913 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699065 S 2026 0 1 "" nsv831683 9 107354767 107540843 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447940 S 95 0 1 "" nsv528269 9 107482512 107490443 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704837 S 2026 0 1 "" nsv521747 9 107498129 107520668 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694513 S 2026 0 1 "" nsv519833 9 107504130 107509894 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697076 S 2026 0 1 "" nsv525064 9 107580992 107583913 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701116 S 2026 0 1 "" nsv526623 9 107583320 107583913 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702943 S 2026 0 1 "" nsv520911 9 107583913 107597349 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv679368,nssv677564 M 2026 0 2 "" nsv508561 9 107585891 107624922 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617373,nssv618862 M 4 0 2 "" CHM,NA10860 nsv6657 9 107612761 107625026 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3737 S 9 0 1 "" NA12878 nsv416968 9 107617093 107620167 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv435546 M 24 "" nsv524813 9 107990673 107992709 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700807 S 2026 0 1 "" nsv6658 9 107998169 108029413 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1795 S 9 1 0 "" NA18555 nsv466478 9 108085293 108111866 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542008 S 1557 0 1 "" 1780854491_A nsv831684 9 108105089 108286623 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447941 S 95 0 1 "" nsv519943 9 108641599 108643632 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697139 S 2026 0 1 "" nsv526750 9 108667514 108668912 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703096 S 2026 0 1 "" nsv6659 9 108698098 108732117 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3739 S 9 1 0 "" NA12878 nsv416100 9 108742738 108742822 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434678 M 24 "" nsv6660 9 108804253 108849872 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6291 S 9 0 1 "" NA12156 nsv507526 9 108862907 108868907 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621948 S 4 1 0 "" NA10860 nsv831685 9 109074714 109253846 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447942 S 95 1 0 "" dgv2410e1 9 109264965 109454331 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv16366,esv43 M 271 0 0 "" NA19193 nsv8557 9 109276884 109279502 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21141 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18860 esv33615 9 109343333 109351338 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv94125 S 51 0 1 "" 21802 nsv831686 9 109441372 109612677 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447943 S 95 1 0 "" nsv509317 9 109454079 109501066 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619558 S 4 1 0 "" NA10860 nsv507527 9 109486608 109492608 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623078 S 4 1 0 "" NA18994 nsv6661 9 109494808 109520736 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2818 S 9 1 0 "" NA18555 nsv831687 9 109580419 109735116 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447944 S 95 1 0 "" nsv466479 9 109590117 109611092 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542009 S 1557 0 1 "" 1788485590_A nsv7430 9 109602891 109650492 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3740 S 9 0 0 "" NA12878 nsv831688 9 109618459 109778633 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447946,nssv1447945 M 95 1 1 "" nsv527195 9 109753058 109794654 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703593 S 2026 0 1 "" dgv494n21 9 109794654 110044291 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv524744,nsv528209 M 2026 2 0 "" nsv416423 9 109877156 109877156 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv435001 M 24 "" nsv466480 9 109909774 109938456 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542010 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01417 nsv466481 9 109998843 110017733 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542011 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00925 nsv515562 9 109999721 110017733 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv663915,nssv657331,nssv659585,nssv681426 M 2026 4 0 "" nsv524745 9 110008685 110044291 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700736 S 2026 1 0 "" esv2752274 9 110012826 110280000 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6986169,essv6982429,essv6982428,essv6982427 M 771 1 0 "" BEC_44 nsv508562 9 110079099 110118723 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622616 S 4 0 1 "" NA18994 nsv528080 9 110081328 110084842 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704616 S 2026 0 1 "" nsv521448 9 110081328 110086540 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698059 S 2026 0 1 "" nsv437092 9 110084815 110085843 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv466973 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA12864 nsv6662 9 110088637 110124018 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1796,nssv6292,nssv10678 M 9 0 3 "" NA12156,NA18555,NA18956 nsv442563 9 110104344 110107724 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" esv32751 9 110104445 110109416 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101215,essv95157,essv94390,essv96877,essv95544,essv95288,essv95916,essv96079,essv93386,essv99584,essv92644,essv99213 M 51 0 12 "" 21618,21721,21808,21817,21847,21872,21911,22007,22170,22217,22233,22275 nsv6663 9 110114729 110139993 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10679 S 9 1 0 "" NA18956 nsv518626 9 110183351 110229507 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696075 S 2026 1 0 "" nsv522509 9 110218125 110218585 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705877 S 2026 1 0 "" nsv466482 9 110221564 110555660 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542012 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00199 nsv416225 9 110232123 110232188 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434803 M 24 "" nsv516479 9 110255668 110256879 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv690808,nssv668607,nssv676460,nssv674579 M 2026 0 4 "" nsv521593 9 110255668 110267276 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698210 S 2026 0 1 "" nsv466484 9 110367110 110393058 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542014 S 1557 0 1 "" NINDS_159 nsv6664 9 110465350 110497660 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv823 S 9 1 0 "" NA19240 nsv527933 9 110478116 110483401 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704441 S 2026 0 1 "" nsv510201 9 110640857 110646857 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621362,nssv618317 M 4 0 2 "" CHM,NA15510 nsv6666 9 110652973 110698271 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8652 S 9 0 1 "" NA12156 nsv517281 9 110694276 110694533 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv660643,nssv654198 M 2026 0 2 "" nsv510202 9 110703414 110709414 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621363 S 4 0 1 "" NA15510 nsv527204 9 110725819 110730602 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703604 S 2026 0 1 "" nsv527998 9 110754522 110780819 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704523 S 2026 1 0 "" nsv526335 9 110765908 110802276 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702626 S 2026 1 0 "" nsv831689 9 110868732 111057762 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447947 S 95 1 0 "" esv33480 9 110878997 110881975 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101442,essv100908,essv101024,essv95217,essv94107,essv101308,essv97818,essv95589,essv95329,essv101617,essv95781,essv94510,essv93738,essv96126,essv97083,essv100090,essv95929,essv93431,essv93234,essv94928,essv96486,essv99164,essv97782,essv100452,essv100382,essv99436,essv96419 M 51 18 9 "" 21603,21656,21693,21721,21802,21805,21837,21841,21872,21909,21911,21932,21972,22007,22075,22086,22127,22128,22170,22231,22261,22275,22278,22298,22300,22335,22371 nsv518992 9 110891000 110991168 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696459 S 2026 0 1 "" esv33803 9 110915774 110917526 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101479,essv93936,essv94655,essv101426,essv97018,essv95672,essv95421,essv93704,essv99786,essv93313,essv94945,essv96567,essv97705,essv100626 M 51 14 0 "" 21603,21634,21791,21805,21817,21841,21847,21972,22086,22170,22231,22261,22278,22298 esv33423 9 110918769 110919139 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100822 S 51 0 1 "" 21656 esv33522 9 110923976 110924367 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100229 S 51 1 0 "" 22286 nsv517160 9 110965249 110972518 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv679159,nssv664885,nssv686094,nssv675155,nssv671279,nssv653896,nssv692661 M 2026 0 7 "" nsv466485 9 110965249 111068715 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542015 S 1557 0 1 "" NINDS_26 nsv415487 9 111093748 111093883 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434065 M 24 "" nsv442162 9 111104450 111111124 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv438112 9 111140266 111144841 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470113 S 269 0 1 Samples from several populations that are part of the HapMap project. "" NA19159 nsv525736 9 111226241 111228439 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701901 S 2026 0 1 "" nsv416941 9 111229522 111229595 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv435519 M 24 "" nsv466486 9 111506530 111557025 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542016 S 1557 1 0 "" NINDS_222 nsv831690 9 111616880 111812903 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447948,nssv1447949 M 95 0 2 "" nsv6667 9 111622948 111652063 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv824 S 9 1 0 "" NA19240 nsv416718 9 111657496 111665643 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv435296 M 24 "" nsv416550 9 111788403 111789618 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv435128 M 24 "" nsv517388 9 111805863 111806216 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv651877,nssv670331 M 2026 0 2 "" nsv510203 9 111811116 111817116 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624084,nssv622180,nssv618318,nssv621364 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv415720 9 111815984 111815984 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434298 M 24 "" nsv416652 9 111816015 111816015 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv435230 M 24 "" nsv415911 9 111981898 111982212 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434489 M 24 "" nsv518422 9 112076843 112084065 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695857 S 2026 1 0 "" nsv466487 9 112147152 112224136 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542017 S 1557 0 1 "" NINDS_272 nsv6668 9 112212932 112247480 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2820 S 9 1 0 "" NA18555 nsv516134 9 112213912 112217031 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv666427,nssv668370,nssv661952 M 2026 0 3 "" nsv521608 9 112213912 112221529 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698225 S 2026 0 1 "" nsv6669 9 112279834 112312859 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3741 S 9 1 0 "" NA12878 esv32838 9 112296351 112296444 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv94052,essv97449,essv101764,essv97144,essv93191,essv94907 M 51 6 0 "" 21802,21879,21909,22075,22170,22231 dgv2411e1 9 112320009 112727072 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv11277,essv16551 M 271 0 0 "" NA19204,NA19210 dgv2412e1 9 112320009 113082505 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv11113,essv10910,esv507 M 271 0 0 "" NA19209,NA19211 nsv416371 9 112344201 112344284 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434949 M 24 "" nsv6670 9 112348438 112349527 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv825 S 9 1 0 "" NA19240 nsv466488 9 112361591 112450952 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542018 S 1557 0 1 "" NINDS_93 nsv510204 9 112388471 112394471 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618319,nssv622181 M 4 0 2 "" CHM,NA10860 nsv515899 9 112438604 112673425 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv693083,nssv692817,nssv692622,nssv662159,nssv690694,nssv674489,nssv679688,nssv665191,nssv692354,nssv696532,nssv655701,nssv656683 M 2026 11 1 "" dgv262e55 9 112440060 112661008 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv34739,esv34763,esv34346,esv35051 M 771 4 0 "" NA19204,NA19209,NA19210,NA19211 dgv2413e1 9 112450952 112673663 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv7939,essv15168,essv10594,essv9964 M 271 0 0 "" NA19204,NA19209,NA19210,NA19211 nsv442163 9 112462810 112670133 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv6671 9 112474586 112519572 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8653 S 9 0 1 "" NA12156 nsv415734 9 112539904 112540916 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434312 M 24 "" nsv8559 9 112589954 112593874 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18256,nssv18140 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA18552,NA18853 esv2422302 9 112629894 112735988 CNV Deletion Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161446 S 181 0 1 "" ND04484 essv15169 9 112680178 112712453 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19210 nsv8560 9 112684198 112688467 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18348 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18564 dgv2414e1 9 112728012 112743854 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv15164,essv10612 M 271 0 0 "" NA19210,NA19211 nsv529036 9 112732391 112735404 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705747 S 2026 0 1 "" nsv525180 9 112768049 112775742 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701257 S 2026 0 1 "" dgv495n21 9 112774045 112775742 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv521767,nsv528659 M 2026 0 2 "" nsv416436 9 112783168 112792398 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv435014 M 24 "" nsv521966 9 112795710 112797130 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694734 S 2026 1 0 "" nsv466489 9 112795710 112825211 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542019 S 1557 0 1 "" NINDS_232 nsv466490 9 112795710 112863144 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542020 S 1557 0 1 "" 1782681114_A nsv8561 9 112796748 112801162 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21171 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18860 nsv466491 9 112824760 112894028 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542021 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00822 nsv831691 9 112834254 113009013 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447955,nssv1447953,nssv1447952,nssv1447951,nssv1447954,nssv1447956,nssv1447957 M 95 0 7 "" nsv517282 9 112854723 112894953 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697084,nssv704595,nssv703787,nssv670899,nssv654199 M 2026 0 5 "" nsv510987 9 112869864 112935282 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618665 S 4 0 0 "" CHM nsv508563 9 112880187 112935282 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620029 S 4 0 1 "" NA15510 nsv509318 9 112880187 112935282 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619559,nssv623563 M 4 2 0 "" NA10860,NA18994 nsv6672 9 112890585 112936009 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv826,nssv1798 M 9 0 2 "" NA18555,NA19240 nsv525545 9 112894028 112942406 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701682 S 2026 1 0 "" dgv943n27 9 112894028 112946830 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv466492,nsv466493 M 1557 0 2 "" HGDP00199,HGDP00692 dgv2415e1 9 112894953 112971799 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv7260,essv6551 M 271 0 0 "" NA18624,NA18635 nsv8562 9 112898222 112934152 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21201,nssv20593,nssv16639,nssv21623,nssv19328,nssv18378,nssv18947,nssv18843,nssv18286,nssv18869,nssv18555,nssv20562,nssv21464,nssv17666,nssv18170,nssv20221,nssv17604,nssv18547 M 31 16 2 Samples from several populations that are part of the HapMap project. "" NA07048,NA11830,NA12155,NA18502,NA18504,NA18517,NA18537,NA18552,NA18563,NA18564,NA18572,NA18853,NA18860,NA18972,NA18975,NA19007,NA19173,NA19240 dgv2416e1 9 112905346 113082505 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv10694,essv22891,essv15663,essv789 M 271 0 0 "" NA12760,NA18855,NA18912,NA18956 nsv6673 9 112910730 112926677 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9769,nssv828 M 9 2 0 "" NA18507,NA19240 nsv7431 9 112921706 112954266 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5175 S 9 0 0 "" NA19129 nsv6674 9 112926848 112945515 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv829,nssv3742 M 9 2 0 "" NA12878,NA19240 dgv944n27 9 112932269 112946830 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv466501,nsv466496,nsv466498,nsv466503,nsv466502,nsv466499,nsv466500,nsv466497 M 1557 0 8 "" HGDP00160,HGDP00216,HGDP00454,HGDP00906,HGDP00918,HGDP00920,HGDP00931,HGDP01094 nsv466495 9 112932269 112946830 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542025 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00057 nsv515822 9 112932269 112946830 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv657332,nssv664886,nssv671249,nssv655746,nssv662338,nssv686541,nssv682010,nssv674886,nssv692138,nssv683659,nssv680579,nssv686967,nssv689011,nssv661213,nssv690087,nssv680026,nssv685701,nssv692342 M 2026 0 18 "" nsv442164 9 112933905 112963307 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv466504 9 112970563 112985404 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542034 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00216 nsv466507 9 112985404 113016457 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542037 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01171 nsv8563 9 112993830 112996705 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18055 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18980 nsv521449 9 113180945 113182017 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698060 S 2026 0 1 "" nsv519849 9 113190961 113224527 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv659065,nssv684748,nssv681147 M 2026 3 0 "" nsv415849 9 113295374 113295637 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434427 M 24 "" nsv466508 9 113324536 113442292 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542038 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00746 nsv526579 9 113324536 113470716 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702897 S 2026 0 1 "" nsv466510 9 113443431 113476951 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542039 S 1557 0 1 "" 1780862585_A nsv466511 9 113454544 113476951 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542040 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00787 esv33646 9 113477353 113477497 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv95042 S 51 0 1 "" 22231 nsv516235 9 113479706 113486598 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704684,nssv700402,nssv655392,nssv681493,nssv657928,nssv662941,nssv702472,nssv694760,nssv679572,nssv657125,nssv692791,nssv690027,nssv699610,nssv666982,nssv697365 M 2026 3 12 "" esv32877 9 113501881 113502197 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100859,essv93655 M 51 0 2 "" 21656,21972 nsv466513 9 113523823 113551790 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542041 S 1557 0 1 "" 1780854392_A nsv6675 9 113552020 113585126 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1799 S 9 1 0 "" NA18555 nsv415373 9 113742784 113743017 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv433951 M 24 "" nsv521361 9 113853564 113860546 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697971 S 2026 1 0 "" nsv522429 9 113862475 113862539 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705783 S 2026 1 0 "" nsv523823 9 113862475 113862539 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699654 S 2026 0 1 "" nsv521362 9 113862475 113865112 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697972 S 2026 0 1 "" dgv33e196 9 113872498 114446197 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array esv2422396,esv2422492 M 181 2 0 "" ND00528,ND05067 dgv945n27 9 113890444 113946608 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv466516,nsv466522,nsv466521,nsv466524,nsv466520,nsv466518,nsv466515,nsv466519,nsv466523,nsv466525,nsv466514 M 1557 11 0 "" HGDP00559,HGDP00561,HGDP00567,HGDP00572,HGDP00573,HGDP00578,HGDP00582,HGDP00584,HGDP00604,HGDP00606,HGDP00734 nsv528822 9 113895331 113946608 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705496 S 2026 1 0 "" nsv515856 9 113933351 113946608 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv665029,nssv692925,nssv701100 M 2026 2 1 "" dgv946n27 9 113987002 114013003 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv466527,nsv466529 M 1557 0 2 "" HGDP00976,NINDS_49 dgv947n27 9 113996485 114019972 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv466530,nsv466531 M 1557 0 2 "" HGDP00774,NINDS_50 dgv948n27 9 114035822 114535729 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv466535,nsv466534 M 1557 2 0 "" NINDS_133,NINDS_192 nsv6677 9 114056038 114089432 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5176 S 9 1 0 "" NA19129 nsv466536 9 114063624 114079182 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542061 S 1557 0 1 "" 1798860192_A dgv949n27 9 114125355 114185690 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv466537,nsv466546,nsv466542,nsv466543,nsv466540,nsv466544,nsv466545,nsv466541,nsv466538 M 1557 9 0 "" HGDP00567,HGDP00572,HGDP00573,HGDP00578,HGDP00582,HGDP00584,HGDP00600,HGDP00604,HGDP00734 nsv528823 9 114126675 114188219 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705497 S 2026 1 0 "" nsv466547 9 114128163 114153142 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542072 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00688 nsv509319 9 114139020 114222439 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620927 S 4 1 0 "" NA15510 nsv522296 9 114151482 114152879 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695077 S 2026 0 1 "" nsv521043 9 114152879 114153142 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697751 S 2026 0 1 "" esv33804 9 114158213 114169829 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101514,essv97502,essv101150,essv93813,essv93824,essv96774,essv100985,essv95190,essv94705,essv94659,essv94009,essv101364,essv94342,essv97869,essv95575,essv95466,essv93042,essv97407,essv97344,essv101747,essv99095,essv92917,essv92733,essv96193,essv96625,essv96591,essv97181,essv95972,essv93578,essv93553,essv99580,essv99640,essv94999,essv95009,essv92664,essv96480,essv97732,essv100246,essv100578,essv100374,essv99441,essv96354 M 51 13 29 "" 21603,21616,21618,21634,21659,21693,21721,21791,21802,21805,21808,21837,21841,21847,21863,21879,21909,21938,21939,21944,22007,22011,22075,22127,22128,22217,22231,22233,22261,22278,22286,22298,22300,22335,22371 esv2752277 9 114165825 114180799 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6981910,essv6987082 M 771 1 0 "" BEC_500 nsv831693 9 114196004 114361449 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447958 S 95 1 0 "" nsv6678 9 114284865 114317398 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv830 S 9 1 0 "" NA19240 nsv516723 9 114404562 114418795 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv689848,nssv688250,nssv677253,nssv682633,nssv670458 M 2026 0 5 "" nsv831694 9 114408194 114582339 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447959 S 95 1 0 "" nsv7433 9 114426168 114461940 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6293 S 9 0 0 "" NA12156 nsv520757 9 114473222 114473459 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697593 S 2026 1 0 "" nsv6679 9 114485249 114508721 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3743 S 9 1 0 "" NA12878 nsv831695 9 114647180 114805801 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447963,nssv1447960 M 95 2 0 "" nsv7434 9 114741951 120647227 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5177 S 9 0 0 "" NA19129 nsv6680 9 114769942 114778858 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8654 S 9 0 1 "" NA12156 nsv519750 9 114780264 114780962 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv658139,nssv661289 M 2026 0 2 "" nsv831696 9 114781136 114953704 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447964 S 95 1 0 "" nsv519131 9 114876540 114884221 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696611 S 2026 0 1 "" nsv831697 9 114939970 115103481 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447965 S 95 0 1 "" nsv6681 9 114973480 115018163 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8655 S 9 0 1 "" NA12156 nsv507528 9 115004347 115010347 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620457 S 4 1 0 "" NA15510 nsv6682 9 115063613 115079981 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8656 S 9 0 1 "" NA12156 nsv527294 9 115147520 115148276 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703709 S 2026 0 1 "" nsv525037 9 115157560 115161012 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701081 S 2026 0 1 "" nsv519995 9 115237283 115243351 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv660006,nssv660857,nssv679866 M 2026 0 3 "" nsv523800 9 115339644 115342195 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699629 S 2026 0 1 "" nsv831698 9 115363813 115526010 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447967,nssv1447966 M 95 2 0 "" nsv516318 9 115420370 115428509 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv680686,nssv669082,nssv691548,nssv652763 M 2026 0 4 "" nsv831699 9 115536565 115721373 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447968,nssv1447969 M 95 1 1 "" nsv518670 9 115541377 115677391 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696120 S 2026 0 1 "" nsv521497 9 115591597 115593998 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698111 S 2026 1 0 "" nsv6683 9 115624134 115641259 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9770 S 9 1 0 "" NA18507 nsv818719 9 115646573 115650982 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416883 S 112 0 1 "" NA12044 nsv831700 9 115763381 115914053 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447970 S 95 1 0 "" nsv6684 9 115791954 115825484 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8657 S 9 1 0 "" NA12156 nsv6685 9 115859352 115892369 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3744 S 9 1 0 "" NA12878 nsv6686 9 115911120 115942601 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3745 S 9 1 0 "" NA12878 nsv6688 9 116272160 116317370 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8658 S 9 0 1 "" NA12156 nsv831701 9 116327591 116484806 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447971 S 95 1 0 "" nsv6689 9 116421437 116453033 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10680 S 9 1 0 "" NA18956 nsv831702 9 116479867 116658319 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447974,nssv1447972 M 95 2 0 "" nsv519739 9 116589720 116634064 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697022 S 2026 0 1 "" nsv516416 9 116598124 116616213 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv689051,nssv668224,nssv683768,nssv660948,nssv679817,nssv681752 M 2026 6 0 "" nsv466548 9 116599142 116612811 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542073 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00736 nsv8564 9 116601789 116617162 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18899 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19173 dgv2417e1 9 116604215 116620188 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv12136,esv1143 M 271 0 0 "" NA19173 nsv818720 9 116605202 116613291 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416580,nssv1416581 M 112 2 0 "" NA19172,NA19173 nsv466549 9 116605202 116616213 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542074 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01270 nsv521419 9 116620415 116623875 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698029 S 2026 0 1 "" nsv8565 9 116633778 116806728 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17944 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA10839 nsv415481 9 116655888 116657637 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434059 M 24 "" nsv528743 9 116693419 117367262 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705403 S 2026 1 0 "" nsv831704 9 116694275 116861522 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447975 S 95 1 0 "" nsv523606 9 116712171 116799260 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699400 S 2026 1 0 "" nsv525876 9 116767615 116773974 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702076 S 2026 0 1 "" nsv516642 9 116789742 116802811 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv663035,nssv705708,nssv674787,nssv673327,nssv669822,nssv682217,nssv703571,nssv691564 M 2026 4 4 "" nsv519360 9 116868684 116967131 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696810 S 2026 0 1 "" nsv818721 9 116900841 116903422 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415851,nssv1415852 M 112 0 2 "" NA10860,NA11992 esv32690 9 117018943 117027724 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99402 S 51 1 0 "" 22335 esv33017 9 117028476 117031739 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100649 S 51 1 0 "" 21656 esv32663 9 117037255 117037576 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100694 S 51 1 0 "" 21656 nsv831705 9 117037616 117210711 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447976 S 95 1 0 "" nsv415499 9 117182195 117187843 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434077 M 24 "" nsv527834 9 117367262 117377292 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704330 S 2026 0 1 "" nsv831706 9 117401754 117588588 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447977 S 95 1 0 "" nsv831707 9 117776272 117960015 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447979,nssv1447978,nssv1447980,nssv1447981 M 95 4 0 "" nsv6690 9 117850806 117885473 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2821 S 9 1 0 "" NA18555 nsv517914 9 118238195 118871753 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695326 S 2026 1 0 "" nsv6691 9 118305229 118318134 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10681 S 9 1 0 "" NA18956 nsv528108 9 118405075 118425233 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704649 S 2026 1 0 "" nsv6692 9 118460475 118487139 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9771,nssv831,nssv3746 M 9 3 0 "" NA12878,NA18507,NA19240 nsv415646 9 118590087 118590087 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434224 M 24 "" nsv6693 9 118826926 118859894 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv832 S 9 1 0 "" NA19240 nsv831708 9 119135027 119317188 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447982 S 95 0 1 "" nsv527574 9 119161372 119170024 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704035 S 2026 0 1 "" nsv6694 9 119301694 119346410 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5178 S 9 0 1 "" NA19129 nsv415634 9 119325265 119334523 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434212 M 24 "" nsv6695 9 119368331 119402692 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9923 S 9 0 1 "" NA18507 dgv2418e1 9 119368741 119383168 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv13316,esv1129 M 271 0 0 "" NA18507 nsv831709 9 119472672 119653064 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447983,nssv1447985 M 95 2 0 "" nsv528754 9 119549088 119554450 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705416 S 2026 0 1 "" nsv416583 9 119611389 119611706 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv435161 M 24 "" nsv831710 9 119655875 119822058 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447986 S 95 1 0 "" dgv496n21 9 119669408 119670851 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv521735,nsv525584 M 2026 0 2 "" nsv466553 9 119682632 119719973 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542076 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00837 nsv6696 9 119870942 119915917 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8659 S 9 0 1 "" NA12156 nsv6697 9 119923997 119969396 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6294 S 9 0 1 "" NA12156 nsv526970 9 119966899 119970508 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703342 S 2026 1 0 "" nsv523086 9 119966899 119974076 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698778 S 2026 0 1 "" nsv510205 9 120105476 120111476 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622182,nssv621365,nssv618320 M 4 0 3 "" CHM,NA10860,NA15510 nsv6699 9 120311707 120321126 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1800 S 9 0 1 "" NA18555 esv33143 9 120333255 120550643 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100043 S 51 0 1 "" 22086 nsv831711 9 120344862 120547195 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447987 S 95 1 0 "" nsv526071 9 120547124 120639046 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702311 S 2026 0 1 "" nsv517321 9 120629581 120639046 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv681052,nssv667764,nssv685989,nssv677381,nssv651713,nssv682531 M 2026 0 6 "" dgv2419e1 9 120727751 120922549 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv2463,esv459 M 271 0 0 "" NA18999 nsv8566 9 120734282 120738693 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21653 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18972 esv32780 9 120736735 120737105 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98773,essv100915,essv98296,essv99783 M 51 3 1 "" 21606,21693,21772,22086 nsv6700 9 120738801 120771846 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8660 S 9 1 0 "" NA12156 nsv507529 9 120816630 120822630 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620458,nssv621949,nssv623079 M 4 3 0 "" NA10860,NA15510,NA18994 nsv831712 9 121345536 121501114 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447988 S 95 0 1 "" nsv520039 9 121369616 121442056 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv686695,nssv702919,nssv682718,nssv660192 M 2026 0 4 "" nsv471468 9 121406001 121440540 CNV Deletion Alkan et al 2009 19718026 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen nssv548366,nssv548365 M 3 "" nsv518762 9 121518286 121596144 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696212 S 2026 1 0 "" nsv525090 9 121653059 121661315 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701149 S 2026 0 1 "" nsv521711 9 121683818 121690090 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698337 S 2026 0 1 "" nsv527192 9 121685450 121690090 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703589 S 2026 1 0 "" nsv521251 9 121686748 121687257 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv690249,nssv688539 M 2026 2 0 "" nsv416918 9 121721556 121721688 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv435496 M 24 "" nsv831713 9 121755479 121951937 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447989,nssv1447990 M 95 2 0 "" nsv522145 9 121759921 121782886 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694918 S 2026 0 1 "" nsv509320 9 121793194 121862252 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620929 S 4 1 0 "" NA15510 nsv416108 9 121842331 121844777 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434686 M 24 "" nsv6701 9 121851959 121886181 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8661 S 9 1 0 "" NA12156 nsv831715 9 121908445 122068553 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447991 S 95 1 0 "" nsv525442 9 121931840 121965150 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701570 S 2026 1 0 "" nsv6702 9 121993653 122025927 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6295 S 9 1 0 "" NA12156 nsv523017 9 122081539 122087447 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698693 S 2026 0 1 "" nsv416680 9 122087663 122091901 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv435258 M 24 "" nsv831716 9 122131135 122317273 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447992 S 95 1 0 "" nsv6703 9 122161031 122193790 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3748 S 9 1 0 "" NA12878 nsv416964 9 122233163 122233227 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv435542 M 24 "" nsv6704 9 122303581 122348497 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8662 S 9 0 1 "" NA12156 nsv516572 9 122325278 122329038 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv674864,nssv673415,nssv669262 M 2026 3 0 "" nsv6705 9 122459581 122489900 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8663 S 9 1 0 "" NA12156 nsv416421 9 122520838 122520989 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434999 M 24 "" nsv518250 9 122621753 122636272 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695681 S 2026 0 1 "" esv33734 9 122761694 122771523 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99992 S 51 0 1 "" 22086 nsv831717 9 122860643 123014618 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447994,nssv1447993 M 95 2 0 "" nsv517807 9 122941295 122952452 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695213 S 2026 0 1 "" nsv6706 9 123083921 123118031 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8665 S 9 1 0 "" NA12156 nsv518647 9 123129529 123275758 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696096 S 2026 0 1 "" nsv6707 9 123167493 123200809 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5180 S 9 1 0 "" NA19129 nsv521578 9 123396878 123403604 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698194 S 2026 0 1 "" nsv831718 9 123601911 123752054 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447996 S 95 0 1 "" nsv6708 9 123676398 123701626 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9473 S 9 1 0 "" NA18517 nsv7435 9 123779570 123872613 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv11205,nssv10682,nssv11204,nssv6296,nssv3750,nssv10683,nssv9474,nssv3749,nssv6297 M 9 0 0 "" NA12156,NA12878,NA15510,NA18517,NA18956 nsv45 9 123792139 123823112 OTHER Inversion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv45 S 1 0 0 "" NA15510 nsv47 9 123829124 123862559 OTHER Inversion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv47 S 1 0 0 "" NA15510 nsv831719 9 123935170 124121774 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447997 S 95 1 0 "" nsv831720 9 123935502 124104602 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447998 S 95 0 1 "" nsv6710 9 123940901 123951004 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3751 S 9 1 0 "" NA12878 nsv516649 9 124005585 124006839 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv669877,nssv677044 M 2026 0 2 "" nsv6711 9 124059083 124103884 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8666 S 9 0 1 "" NA12156 nsv416631 9 124075322 124075707 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv435209 M 24 "" nsv519767 9 124089816 124206726 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv674014,nssv685856,nssv688352,nssv660877,nssv692234,nssv658400,nssv683298,nssv679769,nssv683358 M 2026 0 9 "" nsv466558 9 124306246 124399758 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542077 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00774 nsv517372 9 124309672 124354405 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv651837,nssv698798,nssv672202,nssv654925,nssv667955 M 2026 0 5 "" nsv466559 9 124309672 124368772 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542078 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00515 nsv526209 9 124312761 124373739 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702473 S 2026 1 0 "" nsv6712 9 124364474 124387994 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8667 S 9 0 1 "" NA12156 nsv6713 9 124432816 124468023 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv833 S 9 1 0 "" NA19240 nsv831721 9 124513880 124701709 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1447999 S 95 1 0 "" nsv524034 9 124650194 124653304 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699897 S 2026 0 1 "" nsv831722 9 125143932 125317912 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448000 S 95 1 0 "" nsv515979 9 125230338 125307580 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv654926,nssv700721,nssv665572 M 2026 0 3 "" nsv6714 9 125415829 125432223 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9772 S 9 1 0 "" NA18507 nsv466560 9 125483063 125546075 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542079 S 1557 0 1 "" 1780854441_A nsv818723 9 125568348 125579168 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416084 S 112 1 0 "" NA12813 nsv6715 9 125644985 125671528 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3752,nssv5181,nssv834,nssv10684 M 9 4 0 "" NA12878,NA18956,NA19129,NA19240 nsv416676 9 125741037 125741096 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv435254 M 24 "" dgv2420e1 9 125822418 125845443 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv999,essv6492 M 271 0 0 "" NA18636 nsv525591 9 125827734 125879978 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701733 S 2026 0 1 "" nsv522609 9 125871057 125872533 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv706001 S 2026 0 1 "" nsv6716 9 125944644 125976399 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10685 S 9 1 0 "" NA18956 dgv2421e1 9 125955511 126116512 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1394,esv79 M 271 0 0 "" NA19007 nsv527902 9 125990900 126000024 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704406 S 2026 0 1 "" nsv518876 9 125995402 125998004 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696334 S 2026 0 1 "" nsv466562 9 125995402 126006543 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542081 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00870 nsv524301 9 126009325 126027029 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700202 S 2026 1 0 "" nsv442565 9 126023839 126033863 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv6717 9 126044447 126065206 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5182 S 9 0 1 "" NA19129 nsv437651 9 126049773 126064385 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467532 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19129 nsv8567 9 126050359 126059121 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20038,nssv20623 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18504,NA19144 nsv515564 9 126051654 126054865 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv663916,nssv681181,nssv687310,nssv688214,nssv678744 M 2026 0 5 "" nsv442566 9 126054869 126056256 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv8568 9 126059121 126076644 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20592,nssv23056 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA18502,NA19221 nsv526891 9 126066633 126067388 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703249 S 2026 0 1 "" nsv525607 9 126128121 126133085 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701752 S 2026 1 0 "" nsv528672 9 126286704 126306746 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705310 S 2026 1 0 "" nsv509322 9 126298247 126378311 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619561 S 4 1 0 "" NA10860 nsv516074 9 126338391 126355606 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv688680,nssv661528,nssv687039,nssv685784,nssv679514,nssv684608,nssv669989,nssv679721,nssv677486,nssv693886,nssv674212,nssv661094,nssv660222,nssv669616,nssv666270,nssv686460,nssv675713,nssv670020,nssv684379,nssv671536,nssv672606,nssv671215,nssv659446,nssv668694,nssv681989,nssv680180,nssv652301,nssv692020,nssv674762,nssv689908,nssv665852,nssv664840,nssv690276,nssv693453,nssv678179,nssv662913,nssv692697,nssv682505,nssv657674,nssv663749,nssv683251,nssv689691,nssv663690,nssv679915,nssv688353,nssv654879,nssv654977,nssv685219,nssv683359,nssv658608,nssv669633,nssv662571,nssv691320,nssv674356,nssv675327,nssv685326,nssv693589,nssv691892,nssv667812,nssv672650,nssv656375,nssv673612,nssv673729,nssv655375,nssv690143,nssv690298,nssv687949,nssv656024,nssv665192,nssv652475,nssv660464,nssv651838,nssv657519,nssv670624,nssv693305,nssv653738,nssv658423,nssv674187,nssv664622,nssv657267,nssv682719,nssv684290,nssv692862,nssv672023,nssv680849,nssv670670,nssv677933,nssv682308,nssv660878,nssv668323,nssv677781,nssv689108,nssv688804,nssv683205,nssv688566,nssv673039,nssv651899,nssv692438,nssv660446,nssv693344,nssv652950,nssv691344 M 2026 0 102 "" nsv466563 9 126338391 126361202 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542082 S 1557 0 1 "" NINDS_49 nsv521117 9 126338391 126363843 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697796 S 2026 0 1 "" nsv831723 9 126435251 126611819 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448002,nssv1448001,nssv1448003,nssv1448004,nssv1448005,nssv1448007,nssv1448008,nssv1448010,nssv1448009 M 95 2 7 "" nsv517494 9 126452789 126456789 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv688475,nssv675616,nssv656793,nssv652188,nssv671385 M 2026 0 5 "" nsv528719 9 126452789 126486543 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705369 S 2026 0 1 "" nsv6718 9 126486375 126531468 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8668 S 9 0 1 "" NA12156 nsv466568 9 126502337 126542149 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542083 S 1557 0 1 "" 1780854418_A nsv831724 9 126558471 126721807 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448014,nssv1448011,nssv1448013,nssv1448012,nssv1448015 M 95 5 0 "" nsv8570 9 126598552 126603138 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20622,nssv23114 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA18502,NA19221 nsv438113 9 126600349 126601862 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470115,nssv470116,nssv470120,nssv470114,nssv470118,nssv470117 M 269 0 6 Samples from several populations that are part of the HapMap project. "" NA18532,NA18582,NA18952,NA18970,NA18995,NA18998 nsv831726 9 126680408 126909104 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448021,nssv1448019,nssv1448016,nssv1448020,nssv1448018,nssv1448023,nssv1448024,nssv1448025,nssv1448022,nssv1448027,nssv1448026 M 95 10 1 "" nsv6719 9 126699000 126733138 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8669 S 9 1 0 "" NA12156 nsv6721 9 126818815 126853736 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv837 S 9 1 0 "" NA19240 nsv517522 9 127004206 127055159 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv676706,nssv688354,nssv656905,nssv652268,nssv687646,nssv693652,nssv691532 M 2026 0 7 "" nsv525053 9 127092855 127113769 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701101 S 2026 0 1 "" nsv516966 9 127102094 127118960 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv653844,nssv664752,nssv662788,nssv675043,nssv687469,nssv657520,nssv677761,nssv685062,nssv679818,nssv668871,nssv655598,nssv690028,nssv653525,nssv669396,nssv692573,nssv678208,nssv680181 M 2026 4 13 "" nsv523364 9 127102094 127144526 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699113 S 2026 0 1 "" nsv521594 9 127104910 127132659 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698211 S 2026 0 1 "" nsv527127 9 127113036 127138878 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703512 S 2026 1 0 "" nsv416166 9 127298012 127300237 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434744 M 24 "" nsv466569 9 127311977 127353844 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542084 S 1557 0 1 "" 1798860306_A nsv466570 9 127346120 127389727 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542085 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00776 nsv466571 9 127549757 127616271 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542086 S 1557 0 1 "" NINDS_124 nsv466573 9 127577674 127629688 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542088 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00774 nsv466575 9 127612542 127708693 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542089 S 1557 0 1 "" 1780862075_A nsv466576 9 127632469 127697931 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542090 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00688 dgv497n21 9 127712696 127740364 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv517661,nsv518602 M 2026 0 19 "" nsv466577 9 127748511 127796315 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542091 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00668 nsv6722 9 127753990 127787821 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2822 S 9 1 0 "" NA18555 nsv831727 9 127770915 127914515 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448029 S 95 0 1 "" nsv520376 9 127893920 127894150 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697380 S 2026 0 1 "" nsv518112 9 127930433 127933681 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695526 S 2026 0 1 "" nsv818724 9 127942267 127970614 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417299 S 112 0 1 "" NA18608 nsv6723 9 127948480 127983564 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8670 S 9 0 1 "" NA12156 nsv831728 9 128079827 128258347 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448030 S 95 0 1 "" nsv415888 9 128195577 128195577 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434466 M 24 "" nsv526979 9 128410874 128451226 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703351 S 2026 1 0 "" nsv416781 9 128447833 128448207 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv435359 M 24 "" nsv482132 9 128525488 128538229 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558493 S 1 1 0 "" KB1 nsv416266 9 128543800 128552329 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434844 M 24 "" nsv521120 9 128645108 128671704 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv687845,nssv682564 M 2026 0 2 "" nsv6724 9 128665039 128700248 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv838 S 9 1 0 "" NA19240 nsv416190 9 128781506 128784861 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434768 M 24 "" nsv831729 9 128814875 129000163 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448031 S 95 0 1 "" nsv509323 9 128832895 128971232 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623565,nssv623566 M 4 1 0 "" NA18994 nsv818725 9 128868723 129018467 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415677 S 112 1 0 "" NA12248 nsv466578 9 129018467 129046493 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542092 S 1557 0 1 "" 1780862304_A nsv519061 9 129090260 129090635 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696533 S 2026 0 1 "" nsv416927 9 129106240 129107623 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv435505 M 24 "" nsv6725 9 129114926 129123760 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1801 S 9 0 1 "" NA18555 nsv6726 9 129149307 129173435 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv839 S 9 1 0 "" NA19240 nsv527231 9 129158331 129164847 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703631 S 2026 0 1 "" nsv831730 9 129177632 129348984 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448032 S 95 0 1 "" nsv818726 9 129190852 129339904 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415678 S 112 1 0 "" NA12248 nsv6727 9 129195858 129198170 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10686 S 9 1 0 "" NA18956 dgv950n27 9 129225959 129247121 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv466581,nsv466580,nsv466582 M 1557 0 3 "" NINDS_59,NINDS_60,NINDS_98 nsv509325 9 129232461 129305051 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623568,nssv619562 M 4 2 0 "" NA10860,NA18994 nsv466586 9 129238170 129257767 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542097 S 1557 0 1 "" NINDS_71 nsv466587 9 129276085 129326566 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542098 S 1557 0 1 "" NINDS_200 nsv466588 9 129293213 129339904 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542099 S 1557 0 1 "" NINDS_111 nsv831731 9 129356784 129476479 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448033,nssv1448034 M 95 1 1 "" nsv516376 9 129383155 129388397 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv668983,nssv680592,nssv667873,nssv657604,nssv693272 M 2026 0 5 "" nsv466589 9 129529310 129577104 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542100 S 1557 0 1 "" NINDS_210 nsv6728 9 129594166 129626068 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5183 S 9 0 1 "" NA19129 nsv6729 9 129631492 129656749 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8671 S 9 1 0 "" NA12156 dgv2422e1 9 129679522 129702320 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1110,essv21883 M 271 0 0 "" NA06991 nsv8571 9 129705564 129717633 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21231 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18860 nsv517374 9 129708975 129720280 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv653886,nssv679484 M 2026 0 2 "" nsv831732 9 129762481 129945733 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448035 S 95 0 1 "" nsv416070 9 129843871 129845756 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434648 M 24 "" nsv831733 9 129927932 130118493 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448036 S 95 0 1 "" nsv518603 9 129937040 129939442 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696049 S 2026 0 1 "" nsv466590 9 129948898 130024099 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542101 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00189 nsv6730 9 129975837 130010429 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv840 S 9 1 0 "" NA19240 nsv6732 9 129977614 130021876 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1802 S 9 0 1 "" NA18555 nsv520802 9 129986040 130068263 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv675617,nssv681603,nssv694090,nssv701729 M 2026 1 3 "" nsv466592 9 129998784 130048188 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542102 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01023 nsv466593 9 130022597 130046750 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542103 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00445 nsv466595 9 130068263 130105503 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542105 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00011 nsv6733 9 130103206 130126476 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3753 S 9 0 1 "" NA12878 nsv466596 9 130125202 130151472 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542106 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00049 nsv818727 9 130256136 130337538 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415679 S 112 1 0 "" NA12248 nsv528828 9 130301482 130305133 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705502 S 2026 0 1 "" nsv522297 9 130303819 130305133 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695078 S 2026 0 1 "" nsv433505 9 130320055 130328685 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463386 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA18956 nsv466597 9 130348305 130364969 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542107 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00663 nsv831734 9 130355586 130523500 CNV Gain Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448037 S 95 1 0 "" nsv6734 9 130396227 130419238 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1803 S 9 0 1 "" NA18555 nsv466600 9 130396922 130425163 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542108 S 1557 0 1 "" NINDS_70 nsv518210 9 130452382 130453574 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695633 S 2026 0 1 "" esv33278 9 130458538 130461087 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93779 S 51 0 1 "" 21972 nsv831735 9 130503883 130696522 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448038,nssv1448040 M 95 0 2 "" esv32595 9 130620090 130624673 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98734 S 51 0 1 "" 21606 dgv2423e1 9 130767120 131058115 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv22140,esv474 M 271 0 0 "" NA10857 nsv6735 9 130782329 130826793 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4618 S 9 0 1 "" NA19129 nsv466601 9 130799776 130839329 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542109 S 1557 0 1 "" NINDS_271 nsv831737 9 130800044 131033498 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448042,nssv1448041 M 95 0 2 "" nsv522953 9 130806097 130809002 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698621 S 2026 0 1 "" nsv526527 9 130808574 130809002 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702839 S 2026 0 1 "" nsv8572 9 130840854 130849227 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21261,nssv19358 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA12155,NA18860 nsv509326 9 130861478 130869713 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619563 S 4 1 0 "" NA10860 nsv831738 9 130881493 131058115 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448044,nssv1448043 M 95 0 2 "" esv33889 9 130938560 130945447 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv95489 S 51 1 0 "" 21847 nsv415537 9 130952124 130952987 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434115 M 24 "" esv33161 9 130961204 130966535 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv94688,essv101313,essv94462,essv96909,essv93052,essv97297,essv95887,essv94481,essv93554,essv99668,essv94990,essv97777,essv100413,essv96358 M 51 14 0 "" 21791,21805,21808,21817,21863,21879,21911,21932,22128,22217,22231,22278,22300,22371 nsv831739 9 131050287 131215735 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448045,nssv1448046 M 95 0 2 "" nsv509327 9 131146322 131353753 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623569,nssv619565,nssv620930,nssv619564 M 4 3 0 "" NA10860,NA15510,NA18994 nsv466602 9 131174351 131252745 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542110 S 1557 0 1 "" NINDS_119 nsv831740 9 131222835 131422265 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448047 S 95 0 1 "" esv33736 9 131241742 131243633 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100745 S 51 1 0 "" 21656 nsv6736 9 131273307 131317468 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1804 S 9 0 1 "" NA18555 nsv8573 9 131287281 131297517 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18606,nssv21683,nssv18577 M 31 0 3 Samples from several populations that are part of the HapMap project. "" NA10863,NA11830,NA18972 nsv442567 9 131290480 131295258 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" essv2695 9 131300676 131448167 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18967 dgv2424e1 9 131300676 131508504 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv753,essv3262 M 271 0 0 "" NA18967 nsv818728 9 131301977 131437988 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417706 S 112 1 0 "" NA18999 nsv6737 9 131318042 131347147 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3754,nssv1806 M 9 2 0 "" NA12878,NA18555 esv34928 9 131319462 131470483 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6990453,essv6980189,essv6987029 M 771 1 0 "" NA18967 nsv831741 9 131334305 131468329 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448048 S 95 0 1 "" nsv517936 9 131372492 131437988 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695348 S 2026 0 1 "" nsv831742 9 131400056 131552271 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448049 S 95 0 1 "" nsv438114 9 131412227 131477850 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470121 S 269 0 1 Samples from several populations that are part of the HapMap project. "" NA18967 nsv466603 9 131416654 131435152 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542111 S 1557 0 1 "" NINDS_173 nsv8574 9 131434661 131439883 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18849 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA12740 nsv527193 9 131465788 131467282 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703590 S 2026 1 0 "" nsv518160 9 131465834 131467282 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695581 S 2026 0 1 "" nsv518141 9 131471583 131519317 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695562 S 2026 1 0 "" nsv6738 9 131502772 131535646 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5184 S 9 1 0 "" NA19129 nsv416087 9 131652135 131660469 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434665 M 24 "" nsv523988 9 131747212 131748556 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699844 S 2026 0 1 "" nsv509328 9 131988958 132175668 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620931 S 4 1 0 "" NA15510 nsv6739 9 132040120 132071895 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5185 S 9 1 0 "" NA19129 nsv519872 9 132069110 132080277 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697097 S 2026 0 1 "" nsv416829 9 132078881 132078881 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv435407 M 24 "" nsv416962 9 132079008 132079008 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv435540 M 24 "" nsv528270 9 132118808 132121160 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704838 S 2026 0 1 "" nsv527281 9 132121160 132121433 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703693 S 2026 0 1 "" nsv528123 9 132121160 132156012 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704667 S 2026 0 1 "" nsv6740 9 132122387 132133642 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10687 S 9 1 0 "" NA18956 nsv433506 9 132167812 132170947 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463387 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA18956 nsv6741 9 132287280 132332095 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8672 S 9 0 1 "" NA12156 nsv520491 9 132319351 132341784 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697450 S 2026 1 0 "" nsv416344 9 132326568 132326643 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434922 M 24 "" nsv6744 9 132374780 132405460 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5186 S 9 1 0 "" NA19129 nsv516741 9 132405846 132407363 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv654169,nssv653430 M 2026 0 2 "" nsv415812 9 132418845 132419054 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434390 M 24 "" nsv415449 9 132426726 132435095 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434027 M 24 "" nsv415926 9 132621519 132621653 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434504 M 24 "" nsv517306 9 132653751 132654457 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv693046,nssv689808,nssv655874,nssv655253,nssv668148,nssv684980,nssv654273,nssv671183,nssv664494 M 2026 0 9 "" nsv416899 9 132717472 132717472 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv435477 M 24 "" nsv831743 9 132725233 132887489 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448051 S 95 0 1 "" nsv510206 9 132737152 132743152 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621366,nssv618321,nssv624085 M 4 0 3 "" CHM,NA15510,NA18994 nsv6745 9 132834148 132863394 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9924,nssv6298 M 9 2 0 "" NA12156,NA18507 nsv509329 9 132846763 132861015 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623570,nssv618078 M 4 2 0 "" CHM,NA18994 nsv831744 9 132884991 133078984 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448052,nssv1448053 M 95 1 1 "" nsv526600 9 132906841 132910747 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702920 S 2026 0 1 "" nsv526336 9 132909010 132910747 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702627 S 2026 0 1 "" nsv508564 9 132918771 132978017 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620030 S 4 0 1 "" NA15510 nsv524217 9 132935255 132935611 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700105 S 2026 0 1 "" nsv520759 9 132935255 132943037 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697594 S 2026 0 1 "" nsv466606 9 132935255 132985226 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542113 S 1557 0 1 "" NINDS_197 nsv6746 9 132949234 132973818 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10688,nssv1807 M 9 2 0 "" NA18555,NA18956 esv33978 9 132972721 132986250 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98746,essv98673,essv96751,essv93670,essv100545,essv100475 M 51 1 3 "" 21606,21659,21972,22298 nsv442165 9 132972768 132986994 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv6747 9 132977545 132997589 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10689 S 9 1 0 "" NA18956 nsv516105 9 132983864 132985226 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv687682,nssv698791,nssv666244 M 2026 1 2 "" nsv466610 9 133006233 133052607 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542114 S 1557 0 1 "" NINDS_66 nsv508565 9 133016058 133094712 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620031 S 4 0 1 "" NA15510 dgv951n27 9 133061305 133216717 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv466613,nsv466614 M 1557 2 0 "" HGDP00545,HGDP00547 nsv6748 9 133094385 133125784 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5187 S 9 1 0 "" NA19129 nsv415875 9 133095273 133095496 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434453 M 24 "" nsv442166 9 133158096 133162425 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv415441 9 133160227 133160356 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434019 M 24 "" nsv516103 9 133160742 133163060 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703923,nssv667456,nssv670428,nssv689077,nssv685831,nssv656531,nssv660810,nssv666231,nssv698808,nssv675786 M 2026 0 10 "" nsv818729 9 133160742 133163060 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416377 S 112 0 1 "" NA18855 nsv415788 9 133189862 133189862 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434366 M 24 "" nsv519420 9 133195900 133204605 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696844 S 2026 0 1 "" nsv6749 9 133203181 133226433 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1808,nssv11206,nssv9926,nssv5189,nssv10690,nssv3755,nssv9475,nssv841,nssv6299 M 9 9 0 "" NA12156,NA12878,NA15510,NA18507,NA18517,NA18555,NA18956,NA19129,NA19240 nsv48 9 133210996 133226433 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv48 S 1 1 0 "" NA15510 nsv433408 9 133294047 133307036 CNV Gain Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463289 S 9 1 0 "" NA15510 dgv267n6 9 133408765 133409118 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv415525,nsv415631 M 24 "" dgv2425e1 9 133461155 133485243 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv7045,essv20033,esv306,essv5417 M 271 0 0 "" NA07048,NA18563,NA18612 nsv8575 9 133482128 133485967 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21713 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18972 nsv521138 9 133484254 133486700 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv682818,nssv685889 M 2026 0 2 "" esv33269 9 133484679 133489269 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101504,essv93917 M 51 1 1 "" 21603,21634 nsv528255 9 133524120 133526262 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704821 S 2026 0 1 "" nsv466615 9 133527697 133534795 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542117 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00445 nsv466618 9 133534152 133549256 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542120 S 1557 0 1 "" NINDS_66 nsv466619 9 133544851 133558275 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542121 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00961 nsv466620 9 133580371 133600643 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542122 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00788 nsv8576 9 133596185 133608827 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23142 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19221 nsv519503 9 133601575 133610973 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696888 S 2026 1 0 "" dgv95n68 9 133623256 133809827 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH nsv831745,nsv831746 M 95 0 27 "" nsv8577 9 133637352 133651399 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18929 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19173 nsv466622 9 133646846 133688370 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542123 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00244 nsv6750 9 133753695 133756980 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8673 S 9 1 0 "" NA12156 nsv466623 9 133785144 133791786 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542124 S 1557 0 1 "" 1780862403_A nsv437652 9 133788140 133796855 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467533 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA19221 nsv466624 9 133789141 133800873 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542125 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01163 nsv523970 9 133790405 133792354 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699822 S 2026 0 1 "" nsv521178 9 133791786 133796855 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704754,nssv702065,nssv685857,nssv683907,nssv704331 M 2026 0 5 "" nsv466625 9 133792354 133817526 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542126 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00927 nsv831748 9 133818038 133973880 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448086,nssv1448085 M 95 0 2 "" nsv466626 9 133837324 133864897 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542127 S 1557 0 1 "" 1780862345_A nsv831749 9 133838754 133945318 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448087 S 95 0 1 "" nsv466627 9 133900341 133968515 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542128 S 1557 0 1 "" 1780862416_A nsv466629 9 133923421 133968515 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542130 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01283 nsv526561 9 133968515 134016465 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702877 S 2026 1 0 "" nsv466631 9 133974381 134023144 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542131 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01249 nsv6751 9 133997029 134036685 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6300,nssv1809 M 9 0 2 "" NA12156,NA18555 nsv416109 9 134003819 134007148 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434687 M 24 "" nsv416545 9 134004326 134004629 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv435123 M 24 "" nsv831750 9 134285006 134406727 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448097,nssv1448088,nssv1448091,nssv1448089,nssv1448099,nssv1448090,nssv1448098,nssv1448092,nssv1448096,nssv1448094,nssv1448093 M 95 1 10 "" nsv466632 9 134343272 134395382 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542132 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00785 nsv6752 9 134350238 134394898 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8674 S 9 0 1 "" NA12156 nsv466633 9 134361653 134422937 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542133 S 1557 0 1 "" 1780862444_A nsv466634 9 134376792 134446258 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542134 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00857 nsv516927 9 134435632 134561466 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv683206,nssv705032,nssv678426,nssv683371,nssv662582,nssv681364,nssv656269,nssv683360,nssv702840,nssv702944,nssv655017,nssv676887 M 2026 0 12 "" nsv831751 9 134517510 134693859 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448100,nssv1448101 M 95 0 2 "" nsv466635 9 134517515 134578217 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542135 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00892 nsv831752 9 134520028 134618619 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448110,nssv1448118,nssv1448111,nssv1448108,nssv1448112,nssv1448115,nssv1448114,nssv1448113,nssv1448116,nssv1448120,nssv1448119,nssv1448107,nssv1448109,nssv1448105,nssv1448104,nssv1448102,nssv1448103 M 95 0 17 "" nsv466636 9 134525894 134561466 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542136 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00515 nsv416382 9 134584144 134584770 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434960 M 24 "" nsv818730 9 134590811 134601718 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417735 S 112 0 1 "" NA19003 nsv415998 9 134619253 134619253 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434576 M 24 "" nsv466637 9 134639562 134652880 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542137 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00819 nsv466638 9 134669841 134711821 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542138 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01268 nsv818731 9 134857143 134873259 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417707 S 112 1 0 "" NA18999 nsv6753 9 134887283 134931542 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1810 S 9 0 1 "" NA18555 nsv466640 9 134895947 134913259 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542139 S 1557 0 1 "" 1780862403_A nsv510207 9 134904425 134910425 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622183 S 4 0 1 "" NA10860 nsv416329 9 134916361 134916444 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434907 M 24 "" nsv416186 9 134967273 134967368 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434764 M 24 "" nsv831753 9 135003258 135156877 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448121 S 95 0 1 "" nsv416656 9 135097067 135097150 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv435234 M 24 "" nsv6755 9 135119224 135147500 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6301 S 9 1 0 "" NA12156 nsv415814 9 135132357 135132426 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434392 M 24 "" nsv831754 9 135139609 135283840 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448123,nssv1448122 M 95 0 2 "" nsv509330 9 135192095 135291996 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619566 S 4 1 0 "" NA10860 nsv6756 9 135206966 135226594 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv842 S 9 1 0 "" NA19240 nsv466641 9 135242643 135259278 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542140 S 1557 0 1 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP01019 nsv415426 9 135280125 135280325 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434004 M 24 "" nsv416071 9 135280304 135280370 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434649 M 24 "" nsv8578 9 135282803 135445118 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18879,nssv17696,nssv17122,nssv21743,nssv16835,nssv16810,nssv18636,nssv21291,nssv18873,nssv19388,nssv18977,nssv18607,nssv16669,nssv18585,nssv18316,nssv20068,nssv18408,nssv16481,nssv17974 M 31 19 0 Samples from several populations that are part of the HapMap project. "" NA07048,NA10839,NA10847,NA10863,NA11830,NA12155,NA12740,NA12802,NA12872,NA18537,NA18552,NA18563,NA18564,NA18572,NA18860,NA18942,NA18972,NA19007,NA19144 nsv416893 9 135325833 135326209 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv435471 M 24 "" dgv263e55 9 135343106 135560000 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv2752283,esv2752282,esv2752284 M 771 3 0 "" BEC_131,BEC_22,BEC_311 nsv526571 9 135346519 135353686 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702887 S 2026 0 1 "" nsv818732 9 135365451 135372773 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417545 S 112 0 1 "" NA18971 nsv818734 9 135365451 135377445 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417300 S 112 0 1 "" NA18608 dgv952n27 9 135365451 135536875 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv466655,nsv466642,nsv466648,nsv466653,nsv466643 M 1557 5 0 "" 1780854017_A,1780854090_A,1780862066_A,1782681087_A,1798860567_A nsv416034 9 135368449 135368449 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434612 M 24 "" nsv466646 9 135372773 135481853 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542143 S 1557 1 0 "" 1798860372_A nsv517428 9 135375111 135587115 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703715,nssv655985,nssv652001,nssv681068,nssv696539,nssv658114,nssv705895 M 2026 5 2 "" nsv416620 9 135376618 135376673 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv435198 M 24 "" nsv415351 9 135376666 135376749 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv433929 M 24 "" esv2752285 9 135385000 135536368 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6981213,essv6981211,essv6981212 M 771 1 0 "" BEC_363 nsv831755 9 135390844 135534873 CNV Gain+Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448125,nssv1448124 M 95 1 1 "" nsv415486 9 135398260 135398318 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434064 M 24 "" nsv6757 9 135403047 135449124 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1811 S 9 0 1 "" NA18555 nsv415694 9 135420082 135422201 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434272 M 24 "" nsv415380 9 135421891 135422227 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv433958 M 24 "" nsv416320 9 135433887 135433946 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434898 M 24 "" nsv416592 9 135440009 135443548 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv435170 M 24 "" nsv442568 9 135440050 135442357 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv438116 9 135447592 135451574 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470123,nssv470122 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA18526,NA18999 nsv6758 9 135456561 135477151 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10691 S 9 1 0 "" NA18956 esv2422430 9 135460527 135555556 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161525 S 181 1 0 "" ND03834 nsv509331 9 135467795 135524807 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620932,nssv623571,nssv619567 M 4 3 0 "" NA10860,NA15510,NA18994 nsv466656 9 135609158 135695680 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542147 S 1557 1 0 "" NINDS_230 nsv416052 9 135666769 135666769 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434630 M 24 "" nsv6759 9 135683295 135716765 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5190 S 9 1 0 "" NA19129 dgv953n27 9 135689111 135702768 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv466657,nsv466658 M 1557 0 2 "" HGDP00666,HGDP01179 dgv268n6 9 135705046 135706147 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv415542,nsv416898 M 24 "" nsv416293 9 135741331 135741331 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434871 M 24 "" nsv416064 9 135741393 135741393 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434642 M 24 "" nsv522861 9 135747299 135748584 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698516 S 2026 0 1 "" nsv466659 9 135757904 135806792 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542150 S 1557 0 1 "" 1780862444_A nsv6760 9 135762121 135791718 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3757 S 9 1 0 "" NA12878 nsv831756 9 135766225 135953368 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448130,nssv1448129,nssv1448126,nssv1448127 M 95 0 4 "" nsv818735 9 135772850 135829685 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415680 S 112 1 0 "" NA12248 nsv517335 9 135773399 135921180 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv651759,nssv660069,nssv673575,nssv676461,nssv683832,nssv663806,nssv667907,nssv688238,nssv680028,nssv691089,nssv679747,nssv691075,nssv660316,nssv665030,nssv692235,nssv675374,nssv667874,nssv663750,nssv682102,nssv674358,nssv655127,nssv660147,nssv664623,nssv690991,nssv674669,nssv675274,nssv668966,nssv657194,nssv682616,nssv669879,nssv685858,nssv673547,nssv677347,nssv668746,nssv676901,nssv689350,nssv653351,nssv667634,nssv660223,nssv685548,nssv681013,nssv667335,nssv684587,nssv664572,nssv656930,nssv656752,nssv657675,nssv688828,nssv678158,nssv674015,nssv657698,nssv662789,nssv678115,nssv687772,nssv675246,nssv685135,nssv669167,nssv652269,nssv690229,nssv679770,nssv665700,nssv670748,nssv663768,nssv657521,nssv666271,nssv672753,nssv684267,nssv670728,nssv662742,nssv677382,nssv689692,nssv674213,nssv660661,nssv662572,nssv661262,nssv682275,nssv665787,nssv683392,nssv665853,nssv678766,nssv661214,nssv674945,nssv664769,nssv693845,nssv668502,nssv669464,nssv682147,nssv653400,nssv676028 M 2026 0 89 "" nsv818736 9 135784828 135816083 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417708 S 112 1 0 "" NA18999 nsv415340 9 135788279 135788334 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv433918 M 24 "" nsv415506 9 135788321 135788375 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434084 M 24 "" nsv415465 9 135813897 135813897 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434043 M 24 "" nsv415350 9 135814054 135814054 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv433928 M 24 "" dgv954n27 9 135815930 135879597 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv466667,nsv466666,nsv466665 M 1557 0 3 "" HGDP00977,HGDP01351,NINDS_60 nsv831757 9 136003605 136301880 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448133,nssv1448131,nssv1448132,nssv1448137,nssv1448136,nssv1448135,nssv1448134 M 95 0 7 "" nsv6761 9 136109098 136143724 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3758 S 9 1 0 "" NA12878 nsv528559 9 136110645 136115521 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705175 S 2026 0 1 "" nsv525592 9 136110645 136139349 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701734 S 2026 0 1 "" nsv525309 9 136149725 136156001 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701416 S 2026 0 1 "" nsv415932 9 136163091 136163091 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434510 M 24 "" nsv415943 9 136163200 136163200 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434521 M 24 "" nsv509332 9 136175358 136280807 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619568 S 4 1 0 "" NA10860 nsv466670 9 136211379 136271773 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542154 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00576 nsv6762 9 136227983 136258640 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5191 S 9 1 0 "" NA19129 nsv528394 9 136275292 136277119 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704984 S 2026 1 0 "" nsv6763 9 136279410 136294008 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1812 S 9 0 1 "" NA18555 nsv416548 9 136352671 136352671 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv435126 M 24 "" nsv6764 9 136512964 136557950 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8675 S 9 0 1 "" NA12156 nsv509333 9 136517039 136610830 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619569 S 4 1 0 "" NA10860 dgv2426e1 9 136526666 137102322 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv194,essv17440 M 271 0 0 "" NA12043 nsv831760 9 136536719 136650647 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448138 S 95 0 1 "" nsv6766 9 136584504 136619165 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2823 S 9 1 0 "" NA18555 nsv522574 9 136672245 136678939 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705958 S 2026 0 1 "" nsv8579 9 136675721 136930545 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23170 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19221 nsv6767 9 136678172 136707759 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1813 S 9 1 0 "" NA18555 nsv466673 9 136678796 136733343 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542155 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00473 nsv509334 9 136684457 136894952 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619571,nssv619570 M 4 1 0 "" NA10860 nsv416297 9 136703362 136703624 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434875 M 24 "" nsv6768 9 136708153 136740605 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6302 S 9 1 0 "" NA12156 dgv2427e1 9 136744238 137102322 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv17930,essv24716,essv19428,essv19255,essv22108,essv24532,essv21140,essv23442 M 271 0 0 "" NA10838,NA10854,NA10857,NA11829,NA11840,NA12003,NA12802,NA12815 dgv955n27 9 136753367 136846454 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv466677,nsv466674,nsv466678 M 1557 0 3 "" HGDP00445,HGDP00512,NINDS_168 esv2422220 9 136754424 137520387 CNV Deletion Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161514 S 181 0 1 "" ND01705 dgv956n27 9 136759791 136797938 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv466675,nsv466676 M 1557 0 2 "" 1780862585_A,HGDP00776 nsv415446 9 136768648 136768720 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434024 M 24 "" nsv818737 9 136776723 136811551 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417192 S 112 0 1 "" NA18558 dgv957n27 9 136789375 136896148 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv466679,nsv466680 M 1557 0 2 "" 1780862100_A,1780862388_A nsv524671 9 136793277 136797938 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700641 S 2026 0 1 "" esv32979 9 136836853 136844379 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93231 S 51 1 0 "" 22170 nsv7436 9 136858903 136895479 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1814 S 9 0 0 "" NA18555 nsv6769 9 136894756 136922463 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6303,nssv10692,nssv843,nssv5192 M 9 4 0 "" NA12156,NA18956,NA19129,NA19240 nsv818738 9 136910332 137179874 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415681 S 112 1 0 "" NA12248 nsv466681 9 136922911 136969829 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542163 S 1557 0 1 "" 1780862197_A nsv818739 9 136924558 136944948 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417937,nssv1417948 M 112 2 0 "" NA06991,NA06993 nsv416534 9 136926452 136926523 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv435112 M 24 "" nsv8581 9 136942469 136961027 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16840 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA12802 dgv958n27 9 136944280 136950364 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv466686,nsv466684,nsv466685,nsv466687,nsv466682 M 1557 0 5 "" HGDP00338,HGDP00710,HGDP00876,HGDP01009,HGDP01055 dgv959n27 9 136944280 136955224 CNV Loss Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis nsv466688,nsv466689 M 1557 0 2 "" HGDP00875,HGDP00967 nsv516568 9 136944948 136950364 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv669230,nssv674622,nssv663165,nssv659139,nssv682720,nssv691956,nssv673839 M 2026 0 7 "" nsv523639 9 136944948 136965981 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699440 S 2026 0 1 "" nsv524322 9 136965981 137652505 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700226 S 2026 0 1 "" nsv416390 9 136973062 136973333 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434968 M 24 "" nsv416072 9 136981963 136987034 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434650 M 24 "" nsv8582 9 137015695 137032807 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23198 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19221 nsv482133 9 137110725 137115010 CNV Gain Schuster et al 2010 20164927 BAC_aCGH,Read-depth_analysis Illumina Genome Analyzer and Roche/454 sequencer nssv558494 S 1 1 0 "" KB1 nsv831761 9 137219963 137336762 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448140,nssv1448147,nssv1448144,nssv1448143,nssv1448141,nssv1448142,nssv1448145,nssv1448146,nssv1448151,nssv1448149,nssv1448148,nssv1448152 M 95 0 12 "" nsv416857 9 137240974 137246277 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv435435 M 24 "" nsv527575 9 137249657 137255113 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704036 S 2026 0 1 "" nsv416525 9 137272348 137273050 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv435103 M 24 "" nsv415676 9 137315042 137315160 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434254 M 24 "" nsv8583 9 137473537 137492413 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23226,nssv20652 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA18502,NA19221 dgv2428e1 9 137473621 137617588 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv10983,esv207,essv5017 M 271 0 0 "" NA18576,NA19143 nsv49 9 137486626 137504482 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv49 S 1 1 0 "" NA15510 nsv6770 9 137486626 137517729 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9773,nssv11207,nssv3759,nssv844,nssv8677,nssv10693,nssv1815,nssv5193 M 9 8 0 "" NA12156,NA12878,NA15510,NA18507,NA18555,NA18956,NA19129,NA19240 nsv416290 9 137498434 137498496 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434868 M 24 "" esv33008 9 137506626 137516622 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98659 S 51 0 1 "" 21606 nsv8584 9 137511284 137514839 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv18909 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA12740 nsv416338 9 137512128 137512633 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434916 M 24 "" nsv416493 9 137515965 137516527 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv435071 M 24 "" esv33368 9 137518170 137522395 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100834,essv97180 M 51 2 0 "" 21656,22075 nsv8585 9 137520154 137524651 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv21803,nssv21494,nssv16870 M 31 0 3 Samples from several populations that are part of the HapMap project. "" NA12802,NA18517,NA18972 dgv25e24 9 137523169 137523838 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH esv2750679,esv2750475,esv2750501,esv2750605,esv2750684,esv2750748,esv2750753,esv2750558 M 51 0 8 "" 21618,21693,21841,22011,22231,22261,22286,22298 nsv6771 9 137582959 137614955 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6304 S 9 1 0 "" NA12156 nsv831762 9 137614616 137789944 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448153 S 95 0 1 "" nsv8586 9 137620242 137622849 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23254 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19221 nsv6772 9 137665697 137705495 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5194,nssv3760 M 9 2 0 "" NA12878,NA19129 nsv831763 9 137715668 137889858 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448154 S 95 0 1 "" nsv6773 9 137864051 137916383 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2824,nssv5195,nssv8678,nssv3761,nssv9476,nssv845 M 9 6 0 "" NA12156,NA12878,NA18517,NA18555,NA19129,NA19240 nsv509336 9 137869077 137905610 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623572,nssv618079,nssv619572,nssv620933 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv509337 9 137927094 137964322 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619573 S 4 1 0 "" NA10860 nsv6774 9 137956595 138000890 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1817 S 9 0 1 "" NA18555 nsv509338 9 138009310 138154666 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619574,nssv623573,nssv619575,nssv620934 M 4 3 0 "" NA10860,NA15510,NA18994 nsv6775 9 138012977 138039456 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv847 S 9 1 0 "" NA19240 nsv415473 9 138048506 138049341 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434051 M 24 "" nsv415556 9 138049450 138053033 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434134 M 24 "" nsv416156 9 138091778 138092119 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434734 M 24 "" nsv415991 9 138091828 138091884 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434569 M 24 "" nsv415961 9 138092448 138092617 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv434539 M 24 "" nsv466691 9 138142026 138303776 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542172 S 1557 1 0 A resource of 1064 cultured lymphoblastoid cell lines from 1050 individuals in 51 world populations "" HGDP00938 nsv831764 9 138160083 138341690 CNV Loss Wong_et_al_2007 17160897 BAC_aCGH SMRT Whole Genome Tile Path BAC CGH Array nssv1448155 S 95 0 1 "" dgv2429e1 9 138161400 138429268 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv12252,essv18584,essv9092,essv16878,essv15792,esv115,essv11112,essv14687,essv9377,essv10690,essv15998,essv11714,essv23949,essv12643 M 271 0 0 "" NA12234,NA12814,NA18500,NA18501,NA18853,NA18855,NA19101,NA19131,NA19132,NA19154,NA19159,NA19205,NA19211 nsv8587 9 138187808 138191231 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv16900,nssv18939,nssv20128,nssv20653,nssv17582,nssv18200,nssv18666,nssv18004,nssv18903,nssv21321,nssv17634 M 31 9 2 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA10839,NA10863,NA12740,NA12802,NA18504,NA18853,NA18860,NA18975,NA19144 nsv433507 9 138188354 138189670 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463388 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA19240 nsv6777 9 138247327 138269725 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1818 S 9 0 1 "" NA18555 nsv438117 9 138248970 138254413 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470125,nssv470124 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA18540,NA18960 nsv517336 9 138267196 138303776 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv693797,nssv689444,nssv665256,nssv655178,nssv661116,nssv651760,nssv691637,nssv653378,nssv675825 M 2026 3 6 "" dgv2430e1 9 138274695 138429268 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv8870,essv24231,essv10927,essv16688,essv11289,essv8281,essv22941,essv13801,essv8136,essv15430,essv4744,essv9646,essv14281,essv10351 M 271 0 0 "" NA07357,NA10856,NA18506,NA18508,NA18620,NA19103,NA19141,NA19142,NA19153,NA19194,NA19203,NA19204,NA19206,NA19209 nsv438118 9 138279783 138287418 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470126 S 269 0 1 Samples from several populations that are part of the HapMap project. "" NA12814 nsv466692 9 138280782 138303776 CNV Gain Itsara et al 2009 19166990 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv542173 S 1557 1 0 "" NINDS_83 nsv8588 9 138282272 138293380 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv20682 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18502 nsv8589 9 138294774 138304875 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17612 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA07029 esv32968 9 138295346 138308999 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98821,essv95139,essv94011,essv93654,essv95941,essv96362 M 51 0 6 "" 21606,21721,21802,21972,22127,22371 nsv442167 9 138301155 138308985 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv8590 9 138311291 138406986 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv17664,nssv17726,nssv18145,nssv18230,nssv16699,nssv18959,nssv20712,nssv18260,nssv21537,nssv19448,nssv19007,nssv18969,nssv16865,nssv21524 M 31 6 8 Samples from several populations that are part of the HapMap project. "" NA10847,NA12155,NA12740,NA18502,NA18517,NA18563,NA18572,NA18853,NA18975,NA18980,NA19007,NA19132,NA19173 nsv442569 9 138347777 138351391 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" esv33178 9 138349711 138397921 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93825,essv100998,essv94681,essv101356,essv95748,essv95490,essv97410,essv95775,essv99105,essv92930,essv92830,essv96244,essv97126,essv96022,essv94983,essv98101,essv100352,essv98403,essv94246 M 51 19 0 "" 21634,21693,21791,21805,21841,21847,21879,21911,21938,21939,21944,22007,22075,22127,22231,22259,22300,22352,22394 dgv2431e1 X 313529 532251 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv9624,essv20235,esv497,essv16981 M 271 0 0 "" NA12144,NA19141,NA19144 nsv507940 X 328702 334702 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617960 S 4 1 0 "" CHM nsv508745 X 344076 504155 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618144,nssv623575,nssv623574 M 4 2 0 "" CHM,NA18994 nsv511078 X 344076 658073 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621613,nssv622393 M 4 0 0 "" NA10860,NA15510 nsv507941 X 377395 383395 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617961 S 4 1 0 "" CHM nsv469571 X 451675 623486 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649684 M 265 0 8 Samples from several populations that are part of the HapMap project. "" dgv1n32 X 451676 664235 CNV Gain+Loss Sharp et al 2005 15918152 BAC_aCGH,FISH nsv471599,nsv471600 M 48 25 13 "" JK1051,JK1058,JK1061,JK1688,JK776,NA10470,NA10471,NA10472,NA10473,NA10492,NA10493,NA10495,NA10496,NA10967,NA10970,NA10971,NA10979,NA11323,NA11521,NA11523,NA11776,NA15726,NA15727,NA15729,NA15730,NA15731,NA15732,NA15733,NA16688,NA16689,NA17014,NA17015,NA17017,NA17051,NA17052,NA17058,NA17059 nsv507942 X 564147 570147 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623081,nssv617962 M 4 2 0 "" CHM,NA18994 nsv9923 X 564762 573182 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27455 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18504 nsv9925 X 655166 658686 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28174,nssv24908,nssv23095 M 31 0 3 Samples from several populations that are part of the HapMap project. "" NA07029,NA12872,NA18860 nsv508747 X 950831 1000425 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618145,nssv620936,nssv619576 M 4 3 0 "" CHM,NA10860,NA15510 nsv510811 X 1696629 1866510 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620032 S 4 0 1 "" NA15510 nsv9926 X 1862943 1866276 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26161,nssv26473,nssv27463,nssv26808 M 31 0 4 Samples from several populations that are part of the HapMap project. "" NA18504,NA19007,NA19144,NA19173 dgv2432e1 X 1865728 3187726 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv570,essv2294 M 271 0 0 "" NA18966 nsv9927 X 1954338 1959400 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25805,nssv26099 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18563,NA18853 nsv9928 X 1979134 1985072 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26210,nssv24933,nssv28176,nssv23327,nssv27471 M 31 5 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA18504,NA18572,NA18860,NA19007 nsv9929 X 2285671 2289045 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27479,nssv26229,nssv26819,nssv24958,nssv28178,nssv23123,nssv26487,nssv25827 M 31 8 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA12872,NA18504,NA18853,NA18860,NA19007,NA19144,NA19173 nsv9930 X 2410165 2415654 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27419 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA12155 esv2752318 X 2415669 2687601 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6988506,essv6982216 M 771 1 0 "" BEC_402 nsv508748 X 2528620 2568993 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623576,nssv620937 M 4 2 0 "" NA15510,NA18994 esv34985 X 2535016 3169853 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6980174,essv6987024 M 771 1 0 "" NA18966 nsv516388 X 2693518 2770921 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv679790,nssv669823,nssv667956,nssv692885,nssv670793 M 2026 5 0 "" nsv526612 X 2693518 2840494 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702932 S 2026 0 1 "" dgv264e55 X 2696752 2796637 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv34451,esv2752319 M 771 2 0 "" BEC_727,NA12146 essv21575 X 2696752 2815614 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12146 essv3621 X 2696752 3169853 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18966 nsv510521 X 2699376 2705376 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624086,nssv621367,nssv618468,nssv622184 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 esv32744 X 2743277 2759617 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv93305 S 51 0 1 "" 22170 esv32931 X 2809234 2829748 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101439,essv95835,essv92953,essv96201,essv93370,essv92593,essv98095 M 51 0 7 "" 21603,21911,21939,22007,22170,22233,22259 esv33241 X 2879459 2945564 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99993 S 51 0 1 "" 22086 dgv13n29 X 2921415 3106243 CNV Gain Locke et al 2006 16826518 BAC_aCGH nsv469756,nsv469843 M 265 2 0 "" esv2752320 X 2945292 3146835 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6980775,essv6980776,essv6985405 M 771 1 0 "" BEC_148 nsv6778 X 3028395 3073279 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8679 S 9 0 1 "" NA12156 nsv520829 X 3146835 3160463 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv688784,nssv676068 M 2026 2 0 "" esv33968 X 3190495 3192787 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv95828 S 51 0 1 "" 21911 nsv521392 X 3201473 3207272 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698002 S 2026 0 1 "" esv32714 X 3217249 3217810 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100932 S 51 0 1 "" 21693 esv33979 X 3219694 3240088 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101432,essv100810,essv95118,essv94021,essv93089,essv101636,essv94541,essv96161,essv100053,essv93507,essv94974,essv98125,essv99277,essv97713,essv100114,essv100442,essv94196 M 51 1 16 "" 21603,21656,21721,21802,21863,21909,21932,22007,22086,22128,22231,22259,22275,22278,22286,22300,22394 nsv6779 X 3502422 3515291 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8680 S 9 1 0 "" NA12156 nsv6780 X 3542045 3567993 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6305,nssv1819 M 9 2 0 "" NA12156,NA18555 nsv508749 X 3549545 3558598 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620938 S 4 1 0 "" NA15510 nsv425475 X 3602835 3602889 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv444053 M 24 "" nsv510522 X 3821421 3827421 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624087 S 4 0 1 "" NA18994 nsv442799 X 3824443 3829009 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" esv33754 X 3883110 4650423 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100648,essv100028 M 51 1 1 "" 21656,22086 nsv518203 X 3963978 4015322 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695627 S 2026 1 0 "" dgv2433e1 X 4010786 4023267 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv25048,esv1357,essv24449 M 271 0 0 "" NA12801,NA12865 nsv517587 X 4088964 4119988 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv658781,nssv652500,nssv691243,nssv652445,nssv685860,nssv692140,nssv656686,nssv688277,nssv679160,nssv662227,nssv690117,nssv659476,nssv686518,nssv654459,nssv674698,nssv700239,nssv680868,nssv660705,nssv679460,nssv686285 M 2026 0 20 "" nsv818008 X 4098240 4105786 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416698 S 112 0 1 "" NA19119 nsv438119 X 4098240 4106414 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470127,nssv470128 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA19119,NA19205 nsv525963 X 4139136 4166330 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702175 S 2026 1 0 "" nsv525822 X 4354392 4725554 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702009 S 2026 1 0 "" nsv6781 X 4441124 4475569 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3762 S 9 1 0 "" NA12878 dgv498n21 X 4578373 4710792 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv525973,nsv527698 M 2026 2 0 "" nsv425552 X 4642282 4642355 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv444130 M 24 "" esv33612 X 4650623 4659953 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101444,essv100811 M 51 0 2 "" 21603,21656 nsv518609 X 4725554 4762807 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696056 S 2026 1 0 "" nsv528528 X 4735213 4794535 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705139 S 2026 1 0 "" nsv425536 X 4764444 4764758 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv444114 M 24 "" nsv424933 X 4792995 4792995 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv443511 M 24 "" nsv6782 X 4812956 4842826 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv848,nssv5197,nssv3763,nssv6306,nssv10694,nssv1820 M 9 6 0 "" NA12156,NA12878,NA18555,NA18956,NA19129,NA19240 nsv508750 X 4825005 4846765 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619577,nssv623577,nssv620939 M 4 3 0 "" NA10860,NA15510,NA18994 nsv511079 X 4825005 4846765 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618683 S 4 0 0 "" CHM nsv425425 X 4915080 4917235 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv444003 M 24 "" esv2752328 X 4918716 5447130 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6983580,essv6989820,essv6983582,essv6983581 M 771 0 1 "" BEC_669 nsv523194 X 4983762 5010377 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698910 S 2026 1 0 "" nsv522116 X 4983762 5128174 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694889 S 2026 1 0 "" nsv523195 X 5090333 5128174 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698911 S 2026 1 0 "" nsv818009 X 5090333 5139165 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417768 S 112 1 0 "" NA19003 nsv526111 X 5118851 5128174 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702359 S 2026 0 1 "" nsv522764 X 5264350 5305184 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698404 S 2026 1 0 "" nsv524416 X 5314253 5345243 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700342 S 2026 1 0 "" nsv518242 X 5336584 5350626 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694062 S 2026 1 0 "" nsv522615 X 5336584 5367784 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv706010 S 2026 1 0 "" nsv525871 X 5345243 5354955 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702071 S 2026 0 1 "" nsv522628 X 5350626 5354955 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv706026 S 2026 0 1 "" nsv510812 X 5391474 5398008 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622617 S 4 0 1 "" NA18994 dgv269n6 X 5430073 5430431 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv425230,nsv425396 M 24 "" nsv521826 X 5447349 5457070 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694599 S 2026 0 1 "" nsv525162 X 5447349 5461846 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701236 S 2026 0 1 "" nsv425283 X 5447427 5447606 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv443861 M 24 "" nsv425401 X 5448285 5448366 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv443979 M 24 "" nsv515922 X 5461846 5526065 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv693454,nssv689323,nssv671508,nssv686015,nssv670357,nssv672342,nssv691201,nssv655834,nssv665315,nssv660365,nssv667540,nssv662874,nssv658570,nssv676513,nssv656831 M 2026 15 0 "" nsv524057 X 5587912 5657620 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699923 S 2026 1 0 "" nsv524221 X 5622771 5657620 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700109 S 2026 1 0 "" nsv438120 X 5623935 5643592 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470133,nssv470132,nssv470129,nssv470131 M 269 0 4 Samples from several populations that are part of the HapMap project. "" NA18500,NA18501,NA18503,NA18504 nsv522938 X 5726359 5773498 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698601 S 2026 1 0 "" nsv528749 X 5743713 5803914 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705411 S 2026 1 0 "" nsv526949 X 5743713 5944366 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703320 S 2026 1 0 "" nsv507943 X 5822054 5828054 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620459,nssv623082,nssv617963 M 4 3 0 "" CHM,NA15510,NA18994 nsv519155 X 5863514 7539188 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696632 S 2026 0 1 "" nsv510523 X 5888984 5894984 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618469 S 4 0 1 "" CHM nsv520621 X 5992860 5995716 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694391 S 2026 1 0 "" esv33664 X 5997989 6007226 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101429,essv94119,essv95911,essv98566,essv99851,essv97781 M 51 2 4 "" 21603,21802,21911,22085,22086,22278 nsv525039 X 6014366 6085345 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701083 S 2026 1 0 "" nsv524163 X 6044070 6277795 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700042 S 2026 1 0 "" esv2422345 X 6139255 6569493 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161334 S 181 1 0 "" ND03664 esv2422493 X 6179747 6474462 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161531 S 181 1 0 "" ND02256 dgv265e55 X 6249179 6696119 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv35137,esv34585 M 771 2 0 "" NA12057,NA18992 dgv2434e1 X 6249179 6726074 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv21932,essv1665,esv1294 M 271 0 0 "" NA12057,NA18992 dgv266e55 X 6249476 7965910 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv2752330,esv2752329 M 771 2 0 "" BEC_366,BEC_500 nsv515914 X 6267304 7944789 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698338,nssv701453,nssv701120,nssv685343,nssv692481,nssv671341,nssv668373,nssv659626,nssv665283,nssv689824,nssv677567,nssv656084,nssv696006,nssv699020,nssv671991,nssv668396,nssv685804,nssv699648,nssv669573,nssv669572,nssv667815,nssv683575,nssv671342,nssv659395,nssv685507,nssv678612,nssv668783,nssv696603,nssv695900,nssv702067,nssv659764 M 2026 24 7 "" nsv511080 X 6298689 6341419 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618684,nssv624327 M 4 0 0 "" CHM,NA18994 nsv508751 X 6303162 6317796 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620940 S 4 1 0 "" NA15510 nsv6783 X 6306419 6325846 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8681,nssv5198,nssv2825 M 9 3 0 "" NA12156,NA18555,NA19129 nsv199 X 6310078 6325149 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv199 S 1 1 0 "" NA15510 dgv73n64 X 6317902 6716966 CNV Gain Wang_et_al_2007 17921354 SNP_array nsv818010,nsv818011 M 112 2 0 "" NA12057,NA18992 esv32830 X 6331833 6335938 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv96210 S 51 0 1 "" 22007 esv2752331 X 6341828 6511894 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6983724,essv6983725 M 771 1 0 "" BEC_617 nsv425458 X 6359993 6359993 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv444036 M 24 "" esv2752332 X 6605960 6687431 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6984181,essv6989926,essv6984180,essv6984182 M 771 0 1 "" BEC_795 nsv437197 X 6968819 6989714 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467078 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA10838 nsv9931 X 7042297 7047790 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26501 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19173 dgv2435e1 X 7061134 7483618 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv21707,esv696 M 271 0 0 "" NA12248 dgv267e55 X 7203680 7318332 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv2752333,esv34462 M 771 0 2 "" BEC_341,NA12248 nsv438121 X 7209256 7377061 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470136,nssv470135,nssv470134 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA10854,NA12248 essv18819 X 7211131 7355904 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12248 nsv818012 X 7212677 7377061 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415727 S 112 0 1 "" NA12248 esv2422194 X 7259570 7812598 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161344 S 181 1 0 "" ND04296 nsv6784 X 7364501 7396845 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1821 S 9 1 0 "" NA18555 dgv499n21 X 7555012 8161412 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv518551,nsv518656 M 2026 2 0 "" nsv6785 X 7586492 7619992 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8682,nssv1822 M 9 2 0 "" NA12156,NA18555 esv33658 X 7618685 7623776 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99899 S 51 0 1 "" 22086 esv33861 X 7631452 7631783 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99947 S 51 0 1 "" 22086 esv2752335 X 7640500 8247729 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6986248,essv6982713,essv6982712,essv6986249,essv6982714 M 771 1 0 "" BEC_581 nsv6786 X 7663935 7693918 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1825 S 9 1 0 "" NA18555 nsv424906 X 7668026 7668156 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv443484 M 24 "" esv2752336 X 7682639 7841040 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6989229,essv6987933,essv6981261,essv6981262 M 771 0 1 "" BEC_374 nsv818013 X 7820136 7944789 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417766 S 112 1 0 "" NA18992 dgv2436e1 X 7830174 7901660 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1686,esv1317 M 271 0 0 "" NA18992 nsv524164 X 7865234 8247729 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700043 S 2026 1 0 "" nsv528203 X 7885678 7983862 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704764 S 2026 1 0 "" nsv511081 X 7925468 7957850 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618685 S 4 0 0 "" CHM nsv6788 X 7944700 7964846 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1826 S 9 1 0 "" NA18555 nsv508752 X 7944825 7958828 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620941,nssv623578 M 4 2 0 "" NA15510,NA18994 nsv438122 X 7982043 7988424 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470137 S 269 0 1 Samples from several populations that are part of the HapMap project. "" NA18856 nsv516574 X 7982095 7988424 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv654599,nssv684707,nssv680075,nssv669264,nssv656819 M 2026 0 5 "" nsv818014 X 7982095 7988424 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416421 S 112 0 1 "" NA18856 nsv516754 X 8021347 8203989 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv661055,nssv678902,nssv670641 M 2026 3 0 "" esv2752338 X 8079141 8203640 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6982244,essv6986116 M 771 1 0 "" BEC_405 nsv518966 X 8165999 8231411 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696435 S 2026 1 0 "" esv2752339 X 8176462 8687870 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6983508,essv6983506,essv6983507,essv6983509,essv6988681 M 771 1 0 "" BEC_662 nsv520519 X 8207637 8241241 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv671992,nssv685344 M 2026 0 2 "" nsv518704 X 8247729 8492686 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696155 S 2026 1 0 "" nsv520929 X 8411456 8492686 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv679706,nssv677829 M 2026 2 0 "" nsv6789 X 8477577 8491524 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8683 S 9 0 1 "" NA12156 nsv526672 X 8633870 8826585 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703004 S 2026 1 0 "" nsv6790 X 8709473 8743407 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3764 S 9 1 0 "" NA12878 nsv515590 X 8730673 8826585 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv667635,nssv667305,nssv664625,nssv669465,nssv667389,nssv679244,nssv656931,nssv683873,nssv691178,nssv689993,nssv655420,nssv664019,nssv669030,nssv678040 M 2026 14 0 "" nsv6791 X 8807665 8841877 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3765 S 9 1 0 "" NA12878 nsv425235 X 8839254 8839254 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv443813 M 24 "" nsv510813 X 8938261 8968520 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617446 S 4 0 1 "" CHM dgv2437e1 X 9138826 9310156 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv3216,essv8919,essv21840,essv20296,essv2267,essv1362,essv12569,essv5361,essv4870,essv4245,essv4761,essv17522,essv13452,essv6562,esv437,essv20903,essv11594,essv11721,essv13844,essv15373,essv19531,essv17197,essv16808,essv18305,essv15410,essv491,essv2859,essv15986,essv2653 M 271 0 0 "" NA10846,NA11839,NA12144,NA12762,NA12801,NA12864,NA18501,NA18561,NA18563,NA18603,NA18620,NA18621,NA18854,NA18862,NA18872,NA18952,NA18953,NA18966,NA18967,NA18974,NA19007,NA19098,NA19154,NA19171,NA19173,NA19192,NA19200,NA19203 nsv9932 X 9141962 9145602 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27487 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18504 nsv469613 X 9168528 9318884 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649537 M 265 2 5 Samples from several populations that are part of the HapMap project. "" nsv6792 X 9176130 9203614 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv11209,nssv5199,nssv6307,nssv10695,nssv3766,nssv9477,nssv1827,nssv849 M 9 8 0 "" NA12156,NA12878,NA15510,NA18517,NA18555,NA18956,NA19129,NA19240 nsv9933 X 9179076 9192586 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26515,nssv26830,nssv26247,nssv27428,nssv25848,nssv23355,nssv27495,nssv28180,nssv26118 M 31 9 0 Samples from several populations that are part of the HapMap project. "" NA12155,NA18504,NA18563,NA18572,NA18853,NA18860,NA19007,NA19144,NA19173 nsv508753 X 9180339 9197036 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623579,nssv618146,nssv619578,nssv620942 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv425160 X 9183052 9184096 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv443738 M 24 "" nsv200 X 9183667 9185005 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv200 S 1 1 0 "" NA15510 nsv425028 X 9187821 9191887 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv443606 M 24 "" nsv6793 X 9359389 9404031 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8684 S 9 0 1 "" NA12156 nsv6794 X 9430715 9460712 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10696 S 9 1 0 "" NA18956 nsv507944 X 9748139 9754139 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620460,nssv621950 M 4 2 0 "" NA10860,NA15510 nsv425073 X 9810756 9810756 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv443651 M 24 "" dgv2438e1 X 9860872 10041747 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv160,essv19587 M 271 0 0 "" NA12864 nsv524562 X 9873184 9875804 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700516 S 2026 1 0 "" nsv425191 X 9882530 9891427 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv443769 M 24 "" nsv519068 X 9992296 9993261 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696540 S 2026 1 0 "" nsv6795 X 10008567 10040763 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5200 S 9 1 0 "" NA19129 nsv510524 X 10120822 10126822 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622186 S 4 0 1 "" NA10860 nsv6796 X 10142389 10154372 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5201 S 9 1 0 "" NA19129 dgv500n21 X 10265021 10351406 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv525785,nsv522012 M 2026 2 0 "" nsv6797 X 11034778 11061916 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8686 S 9 0 1 "" NA12156 nsv510814 X 11467097 11493099 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622618 S 4 0 1 "" NA18994 nsv6799 X 11471277 11510739 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv850,nssv3767,nssv1828 M 9 0 3 "" NA12878,NA18555,NA19240 nsv524154 X 11501039 11576032 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700033 S 2026 1 0 "" nsv526302 X 11501039 11641822 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702584 S 2026 1 0 "" nsv523223 X 11510522 11512878 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698945 S 2026 1 0 "" nsv6800 X 11684787 11750068 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv851,nssv10697,nssv6308,nssv1829 M 9 0 4 "" NA12156,NA18555,NA18956,NA19240 nsv510815 X 11698050 11738346 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622619,nssv618863 M 4 0 2 "" NA10860,NA18994 nsv438123 X 11779843 11808306 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470139,nssv470138,nssv470142,nssv470140 M 269 0 4 Samples from several populations that are part of the HapMap project. "" NA10838,NA10839,NA12003,NA12005 nsv6801 X 11827218 11861337 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2827 S 9 1 0 "" NA18555 nsv424962 X 11974688 11983976 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv443540 M 24 "" nsv6802 X 12091989 12136760 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8687 S 9 0 1 "" NA12156 nsv507945 X 12106565 12112565 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621951 S 4 1 0 "" NA10860 nsv516772 X 12147837 12179653 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv670749,nssv655418 M 2026 2 0 "" nsv518725 X 12198676 12203086 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696175 S 2026 1 0 "" nsv6803 X 12277111 12322470 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6309 S 9 0 1 "" NA12156 nsv510525 X 12354842 12360842 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622187,nssv618470 M 4 0 2 "" CHM,NA10860 nsv519419 X 12387090 12421483 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv656109,nssv676603 M 2026 2 0 "" nsv520250 X 12545666 12581551 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv690767,nssv662117,nssv662444 M 2026 3 0 "" nsv6804 X 12837171 12865909 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3768 S 9 1 0 "" NA12878 nsv6805 X 12947256 12980418 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3769 S 9 1 0 "" NA12878 nsv522512 X 12947546 12979224 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705880 S 2026 0 1 "" nsv524070 X 12992490 13012064 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699938 S 2026 1 0 "" nsv442800 X 13236442 13242348 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv528634 X 13474407 13816635 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705264 S 2026 1 0 "" nsv516360 X 13617581 13622440 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv667765,nssv684311,nssv658703 M 2026 0 3 "" nsv510816 X 13645961 13710865 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618864 S 4 0 1 "" NA10860 nsv526098 X 13687618 13706613 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702346 S 2026 0 1 "" nsv525945 X 13865147 13865831 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702151 S 2026 1 0 "" nsv528635 X 13865147 14245302 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705265 S 2026 1 0 "" dgv501n21 X 13893697 14029495 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv528363,nsv527337,nsv528086 M 2026 3 0 "" nsv515759 X 13909417 13927337 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv664699,nssv674964 M 2026 2 0 "" nsv6806 X 13947665 13955492 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9774 S 9 1 0 "" NA18507 nsv507946 X 13978734 13984734 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623083 S 4 1 0 "" NA18994 nsv6807 X 14038663 14074679 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8688 S 9 0 1 "" NA12156 nsv518109 X 14064131 14103398 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694202 S 2026 1 0 "" nsv6808 X 14133549 14166270 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5202 S 9 1 0 "" NA19129 nsv526475 X 14141093 14480281 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702781 S 2026 1 0 "" nsv522625 X 14279527 14392830 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv706022 S 2026 1 0 "" nsv518002 X 14321172 14480281 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695414 S 2026 1 0 "" nsv518062 X 14349019 14389047 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695474 S 2026 1 0 "" nsv6810 X 14354874 14399995 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8689 S 9 0 1 "" NA12156 dgv502n21 X 14369660 14480281 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv518884,nsv518237 M 2026 2 0 "" nsv520933 X 14377454 14419293 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv682566,nssv677975 M 2026 2 0 "" nsv507947 X 14391554 14397554 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617964 S 4 1 0 "" CHM nsv6811 X 14394721 14426729 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6310 S 9 1 0 "" NA12156 nsv9934 X 14508517 14951433 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28212 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18860 nsv6812 X 14614099 14646235 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8690 S 9 0 1 "" NA12156 nsv528005 X 15024876 15042152 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704531 S 2026 1 0 "" nsv528343 X 15049710 15163008 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704925 S 2026 1 0 "" nsv522729 X 15061190 15111831 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698361 S 2026 1 0 "" nsv517938 X 15074435 15108827 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695350 S 2026 1 0 "" nsv6813 X 15116859 15161740 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8691 S 9 0 1 "" NA12156 nsv515969 X 15166718 15184343 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv659567,nssv683425,nssv665529 M 2026 3 0 "" nsv521301 X 15189783 15207716 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694431 S 2026 1 0 "" nsv518666 X 15196273 15198672 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696115 S 2026 0 1 "" nsv510526 X 15311259 15317259 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624089,nssv621368,nssv618471,nssv622188 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 dgv2439e1 X 15418427 15483661 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv4930,esv925 M 271 0 0 "" NA18537 nsv510527 X 16027440 16033440 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618472 S 4 0 1 "" CHM nsv517315 X 16107554 16114186 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv668372,nssv676439,nssv651688,nssv671355 M 2026 0 4 "" nsv425161 X 16187354 16187886 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv443739 M 24 "" nsv442801 X 16231881 16237613 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" esv32680 X 16232062 16238084 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99543 S 51 0 1 "" 22335 nsv438124 X 16233136 16237847 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470144,nssv470143 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA18854,NA19161 nsv515596 X 16237638 16237847 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv663596,nssv653656,nssv651775,nssv657405,nssv658240,nssv683769 M 2026 0 6 "" nsv425209 X 16301562 16301679 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv443787 M 24 "" nsv6814 X 16321180 16365990 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8692 S 9 0 1 "" NA12156 nsv438125 X 16363008 16370179 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470146,nssv470148,nssv470145,nssv470147 M 269 0 4 Samples from several populations that are part of the HapMap project. "" NA19103,NA19128,NA19141,NA19154 nsv6815 X 16386952 16418649 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6311 S 9 1 0 "" NA12156 nsv6816 X 16428370 16459339 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv853 S 9 1 0 "" NA19240 esv33814 X 16462916 16463798 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100732 S 51 1 0 "" 21656 esv33194 X 16467169 16468465 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99403 S 51 0 1 "" 22335 dgv2440e1 X 16946317 16971335 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv5952,esv1378 M 271 0 0 "" NA18577 nsv818015 X 16946570 16954708 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417755 S 112 0 1 "" NA18577 nsv6817 X 17079385 17111082 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6312 S 9 1 0 "" NA12156 dgv503n21 X 17107274 17320633 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv528560,nsv522285 M 2026 2 0 "" nsv7438 X 17183604 17189425 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6313 S 9 0 0 "" NA12156 nsv6818 X 17185472 17230281 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8693 S 9 0 1 "" NA12156 nsv525786 X 17231561 17320633 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701962 S 2026 1 0 "" nsv510817 X 17786426 17878151 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622620 S 4 0 1 "" NA18994 nsv510818 X 17951780 17999758 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622621 S 4 0 1 "" NA18994 esv33657 X 18001411 18009575 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101142,essv94684,essv94067,essv97957,essv93151,essv95766,essv96615,essv93509,essv96565,essv99156,essv96313 M 51 0 11 "" 21618,21791,21802,21837,21863,21911,22011,22128,22261,22275,22371 nsv6819 X 18096690 18121536 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9775 S 9 1 0 "" NA18507 nsv6821 X 18400001 18434165 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8694 S 9 1 0 "" NA12156 nsv528654 X 18405216 18438347 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705288 S 2026 1 0 "" esv33517 X 18438825 18905844 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv96672,essv99804,essv99204,essv99383 M 51 0 4 "" 22011,22086,22275,22335 esv2752317 X 18469043 19070078 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6987252,essv6985768,essv6985769,essv6985767 M 771 1 0 "" SPC_42 nsv520478 X 18611740 18612552 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv671737,nssv692884 M 2026 2 0 "" nsv6822 X 18628329 18663053 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv854 S 9 1 0 "" NA19240 nsv508754 X 18638766 18714320 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619579 S 4 1 0 "" NA10860 nsv6823 X 18740183 18774235 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8695 S 9 1 0 "" NA12156 nsv425077 X 19145253 19145253 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv443655 M 24 "" nsv528469 X 19278589 19300705 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705072 S 2026 1 0 "" nsv6824 X 19314528 19359870 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6314 S 9 0 1 "" NA12156 nsv6825 X 19327210 19360862 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8696 S 9 1 0 "" NA12156 nsv6826 X 19409142 19440120 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5204 S 9 1 0 "" NA19129 nsv6827 X 19850377 19873156 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8697 S 9 0 1 "" NA12156 nsv425374 X 19872307 19872368 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv443952 M 24 "" nsv526033 X 19926978 19984225 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702264 S 2026 1 0 "" nsv520690 X 19926978 20096684 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697558 S 2026 1 0 "" nsv6828 X 20269467 20293496 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9478 S 9 1 0 "" NA18517 nsv517746 X 20505090 20852309 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv660608,nssv659731,nssv655419,nssv656818,nssv656378,nssv688460,nssv677048,nssv693591,nssv675659,nssv661855,nssv680223,nssv679390,nssv664573,nssv692462,nssv679314,nssv682820,nssv666142,nssv689823,nssv653087 M 2026 19 0 "" nsv507948 X 20632675 20638675 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617965,nssv621952 M 4 2 0 "" CHM,NA10860 nsv519154 X 20819359 21138763 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696631 S 2026 0 1 "" nsv6829 X 20972848 20991868 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8698 S 9 0 1 "" NA12156 nsv510819 X 21098384 21161032 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622622 S 4 0 1 "" NA18994 nsv6830 X 21344265 21378470 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv855 S 9 1 0 "" NA19240 nsv6832 X 21677970 21723867 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6316 S 9 0 1 "" NA12156 nsv425472 X 21726232 21728208 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv444050 M 24 "" nsv522700 X 21799406 21800079 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv706111 S 2026 1 0 "" nsv521384 X 21976424 22731101 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697994 S 2026 1 0 "" nsv425055 X 22002768 22002768 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv443633 M 24 "" nsv518528 X 22077180 22077370 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695971 S 2026 1 0 "" nsv524827 X 22077180 22088295 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700826 S 2026 1 0 "" nsv524358 X 22272733 22296352 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700269 S 2026 1 0 "" nsv510528 X 22313261 22319261 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622190 S 4 0 1 "" NA10860 nsv525571 X 22327659 22335791 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701710 S 2026 1 0 "" nsv524497 X 22327659 22341826 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700437 S 2026 1 0 "" nsv507949 X 22367873 22373873 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623084 S 4 1 0 "" NA18994 nsv527909 X 22407501 22428888 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704415 S 2026 1 0 "" nsv521854 X 22427648 22444018 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694628 S 2026 1 0 "" nsv6833 X 22435050 22467966 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv856 S 9 1 0 "" NA19240 nsv507950 X 22571904 22577904 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623085 S 4 1 0 "" NA18994 nsv526379 X 22620791 22673694 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702676 S 2026 1 0 "" dgv2441e1 X 22628358 22749222 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1305,esv1253 M 271 0 0 "" NA18980 nsv521967 X 22631528 22651419 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694735 S 2026 1 0 "" nsv527553 X 22673694 22726142 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704014 S 2026 0 1 "" essv1313 X 22702938 22749222 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18973 nsv527975 X 22735458 22769782 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704490 S 2026 0 1 "" nsv6834 X 22737148 22772221 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3770 S 9 1 0 "" NA12878 nsv519336 X 22795587 22813798 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696799 S 2026 0 1 "" nsv520197 X 22810817 22859573 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv661646,nssv673646 M 2026 2 0 "" nsv527982 X 23030584 23059065 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704501 S 2026 1 0 "" nsv521962 X 23130364 23143055 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694114 S 2026 1 0 "" nsv520240 X 23175546 23242304 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697302 S 2026 1 0 "" nsv518424 X 23200344 23285121 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695859 S 2026 1 0 "" nsv526380 X 23200344 23326188 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702677 S 2026 1 0 "" nsv522092 X 23209492 23292876 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694864 S 2026 0 1 "" dgv74n64 X 23271150 23309706 CNV Loss Wang_et_al_2007 17921354 SNP_array nsv818016,nsv818018 M 112 0 2 "" NA10859,NA11882 nsv6835 X 23367014 23372399 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8699 S 9 1 0 "" NA12156 nsv507951 X 23420385 23426385 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620461 S 4 1 0 "" NA15510 nsv526897 X 23445844 23461319 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703255 S 2026 1 0 "" nsv6836 X 23683315 23716384 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8700 S 9 1 0 "" NA12156 nsv524256 X 23799434 23938699 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700153 S 2026 1 0 "" nsv818019 X 23893123 23938699 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415931,nssv1415932 M 112 2 0 "" NA10861,NA11995 dgv504n21 X 23893123 23994154 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv522378,nsv516667 M 2026 7 0 "" nsv517960 X 24509516 24741630 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695373 S 2026 1 0 "" nsv425056 X 24988811 24988871 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv443634 M 24 "" nsv6837 X 24992296 25021203 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5205 S 9 1 0 "" NA19129 nsv510820 X 25018840 25039608 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622623 S 4 0 1 "" NA18994 nsv524226 X 25031282 25074379 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700114 S 2026 0 1 "" nsv527239 X 25065127 25068393 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703640 S 2026 1 0 "" nsv517323 X 25450920 25457099 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv651717,nssv706023,nssv686477,nssv679573 M 2026 4 0 "" nsv524523 X 25574994 25644363 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700471 S 2026 1 0 "" nsv522405 X 25985844 26867143 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695187 S 2026 1 0 "" nsv525877 X 26003364 26546593 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702077 S 2026 1 0 "" nsv526381 X 26414067 26864742 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702678 S 2026 1 0 "" nsv6838 X 26552439 26562399 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3772 S 9 1 0 "" NA12878 nsv524751 X 26569022 26574311 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700742 S 2026 1 0 "" nsv521524 X 26583681 26688389 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698141 S 2026 1 0 "" nsv510529 X 26599942 26605942 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624090 S 4 0 1 "" NA18994 nsv527781 X 26653261 26688389 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704272 S 2026 1 0 "" nsv511082 X 26827558 26842858 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624328 S 4 0 0 "" NA18994 nsv523912 X 26924162 27194965 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699755 S 2026 1 0 "" nsv507952 X 27003951 27009951 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620462,nssv621953,nssv617966,nssv623086 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv520612 X 27008333 27115350 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697518 S 2026 1 0 "" nsv510821 X 27091278 27098729 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620034 S 4 0 1 "" NA15510 nsv526948 X 27241949 27679063 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703318 S 2026 1 0 "" nsv510530 X 27269638 27275638 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622191 S 4 0 1 "" NA10860 nsv508755 X 27428174 27469131 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623580 S 4 1 0 "" NA18994 nsv527016 X 27470150 27482334 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703391 S 2026 1 0 "" nsv521729 X 27470150 27599229 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694092 S 2026 1 0 "" nsv508756 X 27522196 27556891 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623581 S 4 1 0 "" NA18994 nsv518944 X 27609595 27792673 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696411 S 2026 1 0 "" nsv6839 X 27742219 27790590 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6317,nssv5206 M 9 0 2 "" NA12156,NA19129 nsv524722 X 27781633 27792673 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700708 S 2026 1 0 "" nsv438127 X 27794114 27861622 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470149,nssv470150 M 269 0 1 Samples from several populations that are part of the HapMap project. "" NA18972 nsv522579 X 27844895 27859232 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705966 S 2026 1 0 "" nsv523291 X 27846153 27973877 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699031 S 2026 1 0 "" nsv425250 X 27854529 27854586 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv443828 M 24 "" essv2561 X 27959578 28189157 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18974 essv3191 X 27962843 28110213 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18974 nsv521194 X 28019567 28072457 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697837 S 2026 1 0 "" nsv527359 X 28059707 28064970 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703789 S 2026 1 0 "" nsv510822 X 28087422 28129826 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618865 S 4 0 1 "" NA10860 nsv6840 X 28089986 28121412 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv11210 S 9 1 0 "" NA15510 essv5207 X 28107442 28359884 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18611 nsv9936 X 28242771 28245732 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28214 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18860 nsv507953 X 28256496 28262496 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620463,nssv621954 M 4 2 0 "" NA10860,NA15510 nsv425098 X 28261501 28267021 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv443676 M 24 "" nsv510823 X 28269085 28287987 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622624 S 4 0 1 "" NA18994 nsv6841 X 28358092 28388488 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3773 S 9 1 0 "" NA12878 nsv521056 X 28367793 28442352 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697759 S 2026 1 0 "" nsv521806 X 28618447 28768907 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694577 S 2026 1 0 "" nsv516364 X 28658471 29133939 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697488,nssv680830,nssv682723,nssv661621,nssv662584,nssv700121,nssv694420,nssv701452,nssv704650,nssv702174,nssv655128,nssv655020,nssv700827,nssv694419,nssv656068,nssv667784,nssv700472 M 2026 17 0 "" nsv508758 X 28915835 28941572 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619580 S 4 1 0 "" NA10860 nsv507954 X 29037049 29043049 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621955 S 4 1 0 "" NA10860 nsv521673 X 29048306 29193011 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698291 S 2026 1 0 "" nsv508759 X 29195675 29218028 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619581 S 4 1 0 "" NA10860 nsv523313 X 29295782 29407678 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699055 S 2026 0 1 "" nsv522610 X 29333679 29356521 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv706002 S 2026 1 0 "" nsv527547 X 29341210 29379328 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704008 S 2026 1 0 "" nsv425042 X 29346112 29346112 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv443620 M 24 "" nsv527992 X 29397935 29451174 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704515 S 2026 1 0 "" nsv527548 X 29548545 29643995 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704009 S 2026 1 0 "" nsv818020 X 29551765 29583846 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416212 S 112 0 1 "" NA12892 nsv523207 X 29627838 29647590 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698927 S 2026 1 0 "" nsv6843 X 29736042 29753296 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3774 S 9 1 0 "" NA12878 esv33402 X 29748211 29751265 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97285 S 51 0 1 "" 21879 nsv521731 X 29876310 29896937 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694492 S 2026 1 0 "" nsv520531 X 29879434 29991833 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv673463,nssv672168 M 2026 2 0 "" nsv6844 X 29915422 29949328 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5207 S 9 1 0 "" NA19129 nsv518680 X 30037630 30065525 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696129 S 2026 1 0 "" nsv818021 X 30060898 30065525 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416427,nssv1416438 M 112 2 0 "" NA19140,NA19142 dgv505n21 X 30075837 30219170 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv520655,nsv526743 M 2026 4 0 "" nsv6845 X 30099184 30144391 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8701 S 9 0 1 "" NA12156 nsv6846 X 30173066 30218722 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6318 S 9 0 1 "" NA12156 nsv510531 X 30198744 30204744 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622192 S 4 0 1 "" NA10860 nsv510532 X 30332582 30338582 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618473,nssv621369,nssv622194,nssv624092 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv508760 X 30531112 30558971 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619582 S 4 1 0 "" NA10860 nsv6847 X 30553468 30569137 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5208 S 9 1 0 "" NA19129 nsv6848 X 30771769 30805762 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8702 S 9 1 0 "" NA12156 nsv521510 X 30991329 31014659 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698127 S 2026 1 0 "" dgv506n21 X 31018894 31041478 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv526304,nsv523957 M 2026 2 0 "" nsv519609 X 31059819 31081751 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694337 S 2026 1 0 "" essv17970 X 31123273 31278805 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12003 nsv818022 X 31206460 31240692 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416213 S 112 1 0 "" NA12892 nsv525349 X 31251637 31287212 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701468 S 2026 1 0 "" nsv527085 X 31251637 31337119 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703464 S 2026 1 0 "" nsv522266 X 31261814 31314202 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695046 S 2026 1 0 "" nsv425335 X 31305930 31306017 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv443913 M 24 "" nsv521457 X 31340194 31393749 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694448 S 2026 1 0 "" nsv520230 X 31370732 31679316 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697295 S 2026 0 1 "" nsv521797 X 31501903 31891987 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694567 S 2026 1 0 "" esv2752321 X 31526300 31738601 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6989528,essv6989266,essv6981851 M 771 0 1 "" BEC_493 nsv527851 X 31587529 31754990 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704349 S 2026 0 1 "" nsv526755 X 31604105 31622970 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703102 S 2026 1 0 "" nsv524418 X 31609923 31643067 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700344 S 2026 1 0 "" nsv525835 X 31627285 31637587 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702026 S 2026 0 1 "" nsv527890 X 31753330 31996150 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704393 S 2026 0 1 "" nsv6849 X 31754974 31800055 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8703 S 9 0 1 "" NA12156 nsv6850 X 31882664 31890789 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3775 S 9 1 0 "" NA12878 nsv521798 X 31925220 32275286 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694568 S 2026 1 0 "" nsv522580 X 31999062 32017747 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705967 S 2026 0 1 "" nsv528601 X 32077365 32081017 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705227 S 2026 1 0 "" nsv516788 X 32085422 32136602 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv670873,nssv676707,nssv678485,nssv686516,nssv687079 M 2026 5 0 "" nsv507955 X 32143572 32149572 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620464,nssv623087 M 4 2 0 "" NA15510,NA18994 nsv520320 X 32239947 32285475 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv672671,nssv662873,nssv682974,nssv680298 M 2026 4 0 "" nsv521825 X 32270359 32304212 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694598 S 2026 1 0 "" nsv6851 X 32306153 32336978 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv857 S 9 1 0 "" NA19240 nsv438128 X 32315462 32321067 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470154,nssv470155,nssv470151,nssv470153 M 269 0 4 Samples from several populations that are part of the HapMap project. "" NA18500,NA18501,NA18503,NA18504 nsv526588 X 32322920 32356174 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702906 S 2026 1 0 "" nsv510824 X 32357072 32373232 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622625 S 4 0 1 "" NA18994 nsv523241 X 32371951 32403110 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698969 S 2026 1 0 "" dgv507n21 X 32497316 32587122 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv527233,nsv522637 M 2026 2 0 "" nsv526613 X 32537848 32564347 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702933 S 2026 1 0 "" nsv528951 X 32568491 32568820 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705645 S 2026 0 1 "" nsv522648 X 32612922 32616448 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv706048 S 2026 1 0 "" nsv525602 X 32612922 32618683 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701746 S 2026 1 0 "" nsv526198 X 32732201 32741607 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702460 S 2026 1 0 "" dgv508n21 X 32825545 33080269 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv522100,nsv522469 M 2026 2 0 "" nsv522546 X 32835635 32873304 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705926 S 2026 1 0 "" nsv520052 X 32968837 32992031 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv681427,nssv660319 M 2026 2 0 "" nsv527706 X 32968837 33030108 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704185 S 2026 1 0 "" nsv437852 X 32991338 33002353 CNV Loss Conrad et al 2006 16327808 BAC_aCGH,SNP_genotyping_analysis Not Provided nssv467733 S 60 0 1 Samples from several populations that are part of the HapMap project. "" NA18500 nsv525750 X 33030108 33191324 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701917 S 2026 1 0 "" nsv525738 X 33054831 33127016 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701903 S 2026 1 0 "" nsv518478 X 33063688 33064527 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695914 S 2026 0 1 "" dgv509n21 X 33151401 33317560 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv516480,nsv526258 M 2026 4 0 "" nsv508761 X 33168315 33210923 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619583,nssv623582 M 4 2 0 "" NA10860,NA18994 nsv6852 X 33176448 33191717 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2828 S 9 1 0 "" NA18555 nsv523726 X 33318385 33489059 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699542 S 2026 1 0 "" esv2752322 X 33364882 34117732 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6981297,essv6981296,essv6985535,essv6981298 M 771 1 0 "" BEC_379 nsv528125 X 33454070 33489059 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704670 S 2026 1 0 "" nsv524162 X 33458496 33472079 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700041 S 2026 1 0 "" esv33038 X 33598786 33601181 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101043 S 51 0 1 "" 21693 nsv518993 X 33643360 33789587 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696460 S 2026 1 0 "" nsv520379 X 33694409 33798732 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv663390,nssv676708,nssv696466 M 2026 3 0 "" nsv510825 X 33784529 33809083 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622626 S 4 0 1 "" NA18994 esv33675 X 33802997 33831257 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98617 S 51 0 1 "" 22085 nsv516353 X 33814127 33827684 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv667739,nssv688567,nssv681571,nssv674399,nssv657195 M 2026 0 5 "" nsv438129 X 33880544 33881279 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470157,nssv470156 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA19141,NA19206 nsv6855 X 33989102 34021440 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8704 S 9 1 0 "" NA12156 nsv507956 X 33996309 34002309 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620465,nssv621956 M 4 2 0 "" NA10860,NA15510 nsv520530 X 34171447 34300484 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697471 S 2026 1 0 "" nsv6856 X 34183480 34204738 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3776 S 9 0 1 "" NA12878 nsv519268 X 34252027 34424692 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696757 S 2026 1 0 "" nsv6857 X 34413225 34447261 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8706 S 9 1 0 "" NA12156 nsv6858 X 34454446 34500358 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6319 S 9 0 1 "" NA12156 nsv510533 X 34510800 34516800 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624093,nssv618474 M 4 0 2 "" CHM,NA18994 nsv6859 X 34550592 34595786 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8707 S 9 0 1 "" NA12156 nsv519107 X 34704655 34796736 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696583 S 2026 1 0 "" nsv527976 X 34704655 35342035 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704491 S 2026 1 0 "" nsv424989 X 34747835 34748379 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv443567 M 24 "" nsv517572 X 34750817 34790711 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv659649,nssv664226,nssv652413 M 2026 3 0 "" nsv6860 X 34780354 34829265 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv858,nssv6320 M 9 2 0 "" NA12156,NA19240 nsv510826 X 34858136 34877030 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622627 S 4 0 1 "" NA18994 nsv516080 X 34869227 34876895 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv666063,nssv668768,nssv671507 M 2026 3 0 "" nsv523756 X 34869227 34908679 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699574 S 2026 1 0 "" nsv507957 X 35007237 35013237 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621957 S 4 1 0 "" NA10860 nsv507958 X 35076871 35082871 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617967 S 4 1 0 "" CHM nsv519084 X 35140436 35169507 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696557 S 2026 1 0 "" nsv527390 X 35241481 35323915 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703825 S 2026 1 0 "" nsv442802 X 35390666 35393442 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv522638 X 35640969 35647666 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv706036 S 2026 1 0 "" nsv516150 X 35767271 35938285 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv666507,nssv656379 M 2026 2 0 "" nsv515722 X 36381812 36386641 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv663349,nssv662351,nssv676902,nssv664559,nssv660112 M 2026 0 5 "" nsv518994 X 36438910 36448403 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696461 S 2026 1 0 "" nsv520640 X 36442312 36448403 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv681681,nssv673428 M 2026 2 0 "" nsv6861 X 36615099 36648833 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5209 S 9 1 0 "" NA19129 nsv6862 X 36664248 36697083 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv859 S 9 1 0 "" NA19240 nsv425353 X 36762481 36762691 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv443931 M 24 "" nsv425409 X 36825795 36827481 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv443987 M 24 "" nsv6863 X 36934111 36967115 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6321 S 9 1 0 "" NA12156 esv2752323 X 37546130 37732262 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6982411,essv6982410 M 771 1 0 "" BEC_437 nsv518029 X 37546199 37754231 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695439 S 2026 1 0 "" nsv6864 X 37547373 37569575 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8708 S 9 0 1 "" NA12156 nsv519012 X 37591385 37668492 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696480 S 2026 1 0 "" nsv424909 X 37607243 37610838 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv443487 M 24 "" nsv6866 X 37745264 37797414 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1830,nssv8709 M 9 0 2 "" NA12156,NA18555 nsv525751 X 37778474 37784743 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701918 S 2026 1 0 "" dgv510n21 X 37872939 37934184 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv520388,nsv520298 M 2026 2 0 "" nsv516365 X 37879124 37888845 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv667785,nssv678629 M 2026 2 0 "" nsv522957 X 37879207 37897059 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698626 S 2026 1 0 "" nsv6867 X 38034513 38065701 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv11212 S 9 1 0 "" NA15510 esv32678 X 38139446 38139589 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv94707,essv97376 M 51 0 2 "" 21791,21879 esv33331 X 38142784 38143506 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv94807,essv97386,essv92778,essv95965,essv93483,essv99496 M 51 0 6 "" 21791,21879,21944,22127,22128,22335 esv33197 X 38148527 38149482 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99270 S 51 0 1 "" 22275 esv33240 X 38154569 38155024 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97286,essv92789,essv93456 M 51 0 3 "" 21879,21944,22128 nsv520210 X 38247061 38412875 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv685749,nssv661891 M 2026 2 0 "" nsv510827 X 38324356 38347322 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622628,nssv620035 M 4 0 2 "" NA15510,NA18994 nsv202 X 38336142 38367325 CNV Loss Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv202 S 1 0 1 "" NA15510 nsv6868 X 38336142 38375193 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1831,nssv11213 M 9 0 2 "" NA15510,NA18555 nsv9937 X 38339963 38346623 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26137,nssv23413,nssv25585,nssv26265 M 31 0 4 Samples from several populations that are part of the HapMap project. "" NA07048,NA18563,NA18572,NA19007 nsv424979 X 38575584 38575652 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv443557 M 24 "" nsv6869 X 38731857 38763161 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3777 S 9 1 0 "" NA12878 nsv519630 X 38814921 38824815 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694338 S 2026 1 0 "" nsv517716 X 38836706 38863502 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv652951,nssv664211,nssv658584 M 2026 3 0 "" nsv522678 X 39045286 39048914 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv706086 S 2026 1 0 "" nsv6870 X 39256652 39264775 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8710 S 9 1 0 "" NA12156 nsv521450 X 39270702 39439217 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698061 S 2026 1 0 "" dgv511n21 X 39401362 39418392 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv527373,nsv518902 M 2026 2 0 "" nsv818023 X 39401362 39423852 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1418337,nssv1418326 M 112 2 0 "" NA06985,NA06991 esv32834 X 39429188 39529971 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100876,essv100968,essv95084,essv96630,essv99982,essv98105,essv99257 M 51 0 7 "" 21656,21693,21721,22011,22086,22259,22275 nsv510828 X 39573360 39631050 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622629 S 4 0 1 "" NA18994 esv33829 X 39732851 40307822 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99512 S 51 0 1 "" 22335 nsv508762 X 40060205 40174322 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619584 S 4 1 0 "" NA10860 nsv6871 X 40070171 40114957 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5210 S 9 0 1 "" NA19129 nsv518965 X 40184732 40369549 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696434 S 2026 1 0 "" nsv525223 X 40280427 40369549 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701311 S 2026 1 0 "" nsv524055 X 40427233 40517900 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699921 S 2026 1 0 "" nsv6872 X 40471019 40509707 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5211,nssv8711 M 9 2 0 "" NA12156,NA19129 nsv510534 X 40500465 40506465 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624094 S 4 0 1 "" NA18994 dgv26e24 X 40500618 40501600 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH esv2750485,esv2750515 M 51 2 0 "" 21656,22261 esv33720 X 40506994 42773021 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100731 S 51 0 1 "" 21656 nsv6873 X 40640537 40649373 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8712 S 9 0 1 "" NA12156 nsv507959 X 40680012 40686012 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620466 S 4 1 0 "" NA15510 dgv512n21 X 40720381 40884747 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv522594,nsv516661 M 2026 11 0 "" nsv6874 X 40818745 40852600 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8713 S 9 1 0 "" NA12156 nsv510829 X 40852920 40909433 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622630 S 4 0 1 "" NA18994 nsv508763 X 41031466 41147116 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619585,nssv620943 M 4 2 0 "" NA10860,NA15510 nsv510535 X 41044305 41050305 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622195,nssv624095 M 4 0 2 "" NA10860,NA18994 nsv523134 X 41215974 41532996 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698839 S 2026 1 0 "" nsv6875 X 41347738 41351818 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5212 S 9 1 0 "" NA19129 nsv511083 X 41769998 41870076 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622394 S 4 0 0 "" NA10860 nsv507960 X 41861458 41867458 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617968 S 4 1 0 "" CHM nsv510830 X 42350551 42432970 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622631 S 4 0 1 "" NA18994 nsv6877 X 42563677 42598225 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2829 S 9 1 0 "" NA18555 nsv6878 X 42741665 42787414 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6322 S 9 0 1 "" NA12156 nsv517077 X 42785763 43129138 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv692981,nssv682761,nssv682192,nssv659346,nssv689478,nssv667957,nssv691764,nssv675660,nssv666143,nssv690250,nssv653740,nssv692237,nssv678039,nssv676366 M 2026 14 0 "" nsv6879 X 43114777 43147911 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8714 S 9 1 0 "" NA12156 nsv527045 X 43158977 43249443 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703421 S 2026 1 0 "" nsv517873 X 43161081 43294463 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695279 S 2026 1 0 "" nsv527697 X 43670946 43700967 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704175 S 2026 1 0 "" esv32993 X 43736525 43742431 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv97162,essv100076 M 51 0 2 "" 22075,22086 esv33153 X 43749528 43749657 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99417 S 51 0 1 "" 22335 esv33270 X 43939187 43940173 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100640,essv97242,essv99894 M 51 3 0 "" 21656,22075,22086 nsv6880 X 44015753 44061044 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8715 S 9 0 1 "" NA12156 dgv513n21 X 44148659 44355955 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv527721,nsv527378 M 2026 2 0 "" nsv424950 X 44168020 44168156 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv443528 M 24 "" nsv520232 X 44177540 44190514 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697296 S 2026 0 1 "" nsv6881 X 44272739 44301397 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1832 S 9 0 1 "" NA18555 nsv508764 X 44290519 44362695 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620944 S 4 1 0 "" NA15510 nsv516286 X 44341361 44411209 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv659650,nssv660814,nssv703300,nssv656083,nssv667336,nssv705455 M 2026 6 0 "" nsv6882 X 44348147 44375393 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10698 S 9 1 0 "" NA18956 nsv508765 X 44756028 44798279 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620945 S 4 1 0 "" NA15510 nsv524833 X 44783727 44790374 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700834 S 2026 1 0 "" nsv521851 X 44826213 44845873 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694104 S 2026 1 0 "" nsv526364 X 44866886 45017408 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702658 S 2026 1 0 "" nsv519486 X 44881757 45017408 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv656380,nssv699234,nssv681812,nssv685890,nssv695715,nssv685137 M 2026 5 1 "" nsv522479 X 45060784 45130788 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705845 S 2026 1 0 "" nsv523785 X 45093573 45166885 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699611 S 2026 1 0 "" nsv7439 X 45264058 45346410 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10699,nssv3778 M 9 0 0 "" NA12878,NA18956 nsv526411 X 45426659 46092073 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702711 S 2026 1 0 "" nsv6883 X 45481033 45500373 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8716 S 9 1 0 "" NA12156 nsv523008 X 45766827 45834201 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698680 S 2026 1 0 "" nsv425474 X 45932818 45932818 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv444052 M 24 "" nsv6884 X 46217060 46249981 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5215 S 9 1 0 "" NA19129 nsv6885 X 46264239 46309250 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8717 S 9 0 1 "" NA12156 nsv818024 X 46525223 46666364 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417802 S 112 1 0 "" NA12234 nsv7440 X 46525278 46628065 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1833,nssv5217,nssv9776,nssv860,nssv6323,nssv3780,nssv9927,nssv10700,nssv9479,nssv9480,nssv3779,nssv11214,nssv10701,nssv5216,nssv1834,nssv6324,nssv861 M 9 0 0 "" NA12156,NA12878,NA15510,NA18507,NA18517,NA18555,NA18956,NA19129,NA19240 nsv203 X 46544673 46568124 OTHER Inversion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv203 S 1 0 0 "" NA15510 nsv508766 X 46578357 46600744 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623584 S 4 1 0 "" NA18994 nsv508767 X 46675929 46705842 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619586 S 4 1 0 "" NA10860 nsv6886 X 46783304 46791631 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8718 S 9 0 1 "" NA12156 nsv507961 X 46887950 46893950 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620467,nssv621958 M 4 2 0 "" NA10860,NA15510 nsv438130 X 47242812 47245247 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470158,nssv470160,nssv470161,nssv470159 M 269 0 4 Samples from several populations that are part of the HapMap project. "" NA18500,NA18502,NA19221,NA19223 nsv6888 X 47303727 47336505 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6325 S 9 1 0 "" NA12156 nsv6889 X 47339453 47373340 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2831,nssv9481 M 9 2 0 "" NA18517,NA18555 dgv2442e1 X 47523164 47902964 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv16424,esv650,essv17330,essv9730,essv5393 M 271 0 0 "" NA18563,NA18856,NA18913,NA19139 dgv2443e1 X 47575078 47760428 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv12060,essv14899,essv2422,essv8979,essv9283,essv11377,essv7968,essv14228,essv23168 M 271 0 0 "" NA10831,NA18913,NA18951,NA19127,NA19129,NA19137,NA19139,NA19238,NA19240 nsv6890 X 47583946 47783872 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv863,nssv5218 M 9 0 2 "" NA19129,NA19240 dgv14n29 X 47592145 47829624 CNV Complex Locke et al 2006 16826518 BAC_aCGH nsv469869,nsv469888 M 265 3 2 "" nsv471601 X 47592146 47829624 CNV Gain Sharp et al 2005 15918152 BAC_aCGH,FISH Eichler Segmental Duplication BAC array nssv551176,nssv551092,nssv551090,nssv551095,nssv551094,nssv551178,nssv551104,nssv551097,nssv551182,nssv551168,nssv551177,nssv551174,nssv551101,nssv551100,nssv551179,nssv551109,nssv551103,nssv551185,nssv551108,nssv551096,nssv551187,nssv551106,nssv551183,nssv551184,nssv551091,nssv551105,nssv551173,nssv551181,nssv551170,nssv551110,nssv551171,nssv551107,nssv551102,nssv551188,nssv551186,nssv551180,nssv551175,nssv551093,nssv551098,nssv551099,nssv551169,nssv551172 M 48 21 0 "" JK1058,NA10471,NA10472,NA10473,NA10493,NA10496,NA10967,NA10979,NA11323,NA11521,NA11523,NA15729,NA15730,NA15731,NA15732,NA15733,NA16688,NA17051,NA17052,NA17058,NA17059 nsv522886 X 47594114 47677925 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698542 S 2026 1 0 "" dgv2444e1 X 47610138 47825476 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv18493,essv13379 M 271 0 0 "" NA12156,NA19159 esv2752324 X 47610138 47928294 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6987426,essv6983815 M 771 1 0 "" BEC_629 esv32909 X 47619027 48898479 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100788,essv101014,essv97275,essv99915 M 51 2 2 "" 21656,21693,22075,22086 nsv9938 X 47622759 47628047 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26156 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18563 dgv2445e1 X 47627524 47726981 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv11486,essv6213 M 271 0 0 "" NA18563,NA18856 nsv425407 X 47627717 47628331 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv443985 M 24 "" dgv37n14 X 47628029 47769375 CNV Gain Cooper et al 2008 18776910 SNP_array nsv433460,nsv433461,nsv433459 M 9 3 0 "" NA12156,NA19129,NA19240 nsv9939 X 47629383 47643638 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26205 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18563 nsv6891 X 47636184 47670154 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8719 S 9 1 0 "" NA12156 nsv442804 X 47636411 47737128 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv438131 X 47639570 47738705 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470162 S 269 0 1 Samples from several populations that are part of the HapMap project. "" NA18856 nsv818025 X 47642545 47723896 CNV Gain+Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416900,nssv1417759,nssv1416422,nssv1416901 M 112 2 2 "" NA18856,NA18951,NA19238,NA19240 nsv517350 X 47642545 47820030 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv675807,nssv657289,nssv659911,nssv694514,nssv671958,nssv660949,nssv666444,nssv656156,nssv666331,nssv683792,nssv673817,nssv688499,nssv661035,nssv658369,nssv684897,nssv689301,nssv705846,nssv662067,nssv677334,nssv669207,nssv686753,nssv665196,nssv675191,nssv662975,nssv688540,nssv654657,nssv656738,nssv682617,nssv666843,nssv692141,nssv685235,nssv680255,nssv651801,nssv666579,nssv658085,nssv692574,nssv664666,nssv690490,nssv673217,nssv690173 M 2026 15 25 "" nsv519165 X 47642545 47874017 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696648 S 2026 0 1 "" dgv268e55 X 47643200 47727000 CNV Loss Pinto_et_al_2007 17911159 SNP_array esv2752327,esv2752325,esv2752326 M 771 0 3 "" BEC_27,SPC_165,SPC_76 esv34932 X 47643250 47726981 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6980006,essv6980005 M 771 1 0 "" NA18913 esv34308 X 47643250 47779695 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6980877,essv6980876 M 771 1 0 "" NA19139 nsv9940 X 47647230 47725392 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26841,nssv26224 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA18563,NA19144 nsv521227 X 47668125 47851400 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697857 S 2026 1 0 "" nsv6892 X 47728809 47762004 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3782 S 9 1 0 "" NA12878 nsv9941 X 47732110 47735109 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26243 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18563 nsv9942 X 47748639 47760875 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26261 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18563 nsv523595 X 47820030 47975323 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699387 S 2026 1 0 "" nsv519305 X 47851400 47910682 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696778 S 2026 1 0 "" nsv508769 X 47927367 47978426 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623585 S 4 1 0 "" NA18994 nsv7441 X 47958999 48049237 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5219,nssv5220,nssv6326,nssv864 M 9 0 0 "" NA12156,NA19129,NA19240 nsv528292 X 48047919 48887202 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704866 S 2026 1 0 "" nsv6893 X 48392936 48424803 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10702 S 9 1 0 "" NA18956 nsv6894 X 48519114 48551358 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3783 S 9 1 0 "" NA12878 nsv7442 X 48732448 48818752 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6327,nssv5221,nssv10703,nssv11215,nssv3784,nssv10704,nssv11216,nssv865 M 9 0 0 "" NA12156,NA12878,NA15510,NA18956,NA19129,NA19240 nsv204 X 48733936 48773084 OTHER Inversion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv204 S 1 0 0 "" NA15510 nsv205 X 48774003 48816532 OTHER Inversion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv205 S 1 0 0 "" NA15510 nsv469734 X 48817972 48933111 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649755 M 265 8 1 Samples from several populations that are part of the HapMap project. "" nsv471602 X 48817973 48933111 CNV Gain Sharp et al 2005 15918152 BAC_aCGH,FISH Eichler Segmental Duplication BAC array nssv550298,nssv550302,nssv550299,nssv550285,nssv550314,nssv550303,nssv550286,nssv550293,nssv550297,nssv550307,nssv550305,nssv550287,nssv550290,nssv550312,nssv550292,nssv550288,nssv550300,nssv550294,nssv550310,nssv550304,nssv550311,nssv550309,nssv550306,nssv550296,nssv550301,nssv550284,nssv550308,nssv550295,nssv550315,nssv550313,nssv550291,nssv550283,nssv550289 M 48 33 0 "" JK1058,JK1061,NA10470,NA10471,NA10472,NA10473,NA10493,NA10494,NA10495,NA10496,NA10967,NA10970,NA10971,NA10979,NA11323,NA11521,NA11523,NA11776,NA15729,NA15730,NA15731,NA15732,NA15733,NA16688,NA16689,NA17014,NA17015,NA17017,NA17051,NA17052,NA17058,NA17059,P86GA nsv6895 X 48840152 48875518 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3785 S 9 1 0 "" NA12878 nsv9943 X 48906199 49071572 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28216,nssv25869,nssv26912,nssv23151 M 31 2 2 Samples from several populations that are part of the HapMap project. "" NA12872,NA18853,NA18860,NA19144 nsv6896 X 48931135 48940690 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6328,nssv5222,nssv866,nssv9482,nssv867,nssv10705 M 9 5 0 "" NA12156,NA18517,NA18956,NA19129,NA19240 nsv6897 X 48941328 48946164 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10706,nssv868,nssv1836 M 9 3 0 "" NA18555,NA18956,NA19240 nsv6899 X 49048848 49080528 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5223,nssv3786,nssv10707,nssv869,nssv3787 M 9 4 0 "" NA12878,NA18956,NA19129,NA19240 nsv6900 X 49049434 49072916 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6329,nssv5224 M 9 0 2 "" NA12156,NA19129 nsv6901 X 49155991 49185460 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5225 S 9 1 0 "" NA19129 nsv524056 X 49167706 49218037 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699922 S 2026 1 0 "" nsv6902 X 49346241 49379982 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8720 S 9 1 0 "" NA12156 nsv6903 X 49353104 49370273 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8721 S 9 0 1 "" NA12156 esv33289 X 49386297 49463896 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100629 S 51 0 1 "" 21656 nsv508770 X 49499317 49526096 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619587,nssv620946 M 4 2 0 "" NA10860,NA15510 nsv6904 X 49611537 49641977 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6330 S 9 1 0 "" NA12156 nsv519612 X 49667273 49892875 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv657064,nssv683299 M 2026 2 0 "" nsv508771 X 49895332 50001862 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620947 S 4 1 0 "" NA15510 nsv523598 X 50024627 50144729 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699390 S 2026 1 0 "" nsv527767 X 50192124 50212111 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704256 S 2026 1 0 "" nsv508772 X 50374043 50453257 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619588 S 4 1 0 "" NA10860 nsv518265 X 50405504 50454532 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694220 S 2026 1 0 "" nsv510536 X 50456564 50462564 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622196 S 4 0 1 "" NA10860 nsv6905 X 50542321 50582061 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8723 S 9 0 1 "" NA12156 nsv471604 X 50992351 51151085 CNV Gain Sharp et al 2005 15918152 BAC_aCGH,FISH Eichler Segmental Duplication BAC array nssv550529 S 48 1 0 "" NA10971 nsv524351 X 51030747 51074708 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700259 S 2026 1 0 "" nsv7444 X 51228503 51325898 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1838,nssv10708,nssv9483,nssv1837,nssv870,nssv871 M 9 0 0 "" NA18517,NA18555,NA18956,NA19240 nsv516643 X 51336649 51833006 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701185,nssv659516,nssv669824,nssv691092,nssv673939,nssv675395,nssv691257,nssv691741 M 2026 8 0 "" nsv6906 X 51382423 51427103 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8724 S 9 0 1 "" NA12156 nsv510831 X 52094764 52417705 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618867,nssv622632,nssv620036 M 4 0 3 "" NA10860,NA15510,NA18994 nsv7445 X 52401153 52462854 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5226 S 9 0 0 "" NA19129 nsv7446 X 52573934 52737077 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5227,nssv3788,nssv1839,nssv10710,nssv10709,nssv873 M 9 0 0 "" NA12878,NA18555,NA18956,NA19129,NA19240 nsv7447 X 52808409 52910407 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10711,nssv3789,nssv6331 M 9 0 0 "" NA12156,NA12878,NA18956 nsv508773 X 52946611 53053613 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623587 S 4 1 0 "" NA18994 nsv6907 X 53243940 53276053 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6332 S 9 1 0 "" NA12156 nsv508774 X 53245680 53265107 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619589,nssv620948 M 4 2 0 "" NA10860,NA15510 nsv6908 X 53322515 53356474 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8725 S 9 1 0 "" NA12156 nsv6910 X 53556960 53601753 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8726 S 9 0 1 "" NA12156 nsv6911 X 53644396 53665800 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5228 S 9 0 1 "" NA19129 nsv524220 X 53665427 53859409 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700108 S 2026 1 0 "" nsv510832 X 53681258 53700661 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622633 S 4 0 1 "" NA18994 nsv517375 X 54479272 54524448 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv651841,nssv694173,nssv670088,nssv685680,nssv674764,nssv673549,nssv680730,nssv668748,nssv664444,nssv657826,nssv673861,nssv682193,nssv694499,nssv670429,nssv672608,nssv675661 M 2026 16 0 "" nsv508775 X 54786557 54809744 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619590 S 4 1 0 "" NA10860 nsv507962 X 54817314 54823314 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620468,nssv621959,nssv617969 M 4 3 0 "" CHM,NA10860,NA15510 nsv6912 X 54863537 54908338 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8727 S 9 0 1 "" NA12156 nsv469510 X 55346858 55453935 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649531 M 265 0 0 Samples from several populations that are part of the HapMap project. "" nsv7448 X 55347138 55457193 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9777,nssv10712,nssv9484,nssv6335,nssv10713 M 9 0 0 "" NA12156,NA18507,NA18517,NA18956 nsv524155 X 55391120 55572195 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700034 S 2026 1 0 "" nsv6913 X 55466157 55500209 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv874 S 9 1 0 "" NA19240 nsv508776 X 55504647 55577465 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618147,nssv619591,nssv623589,nssv623588 M 4 3 0 "" CHM,NA10860,NA18994 nsv6914 X 55578565 55614377 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10714,nssv875 M 9 0 2 "" NA18956,NA19240 nsv442805 X 55585680 55590577 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv6915 X 55841244 55872619 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10715 S 9 1 0 "" NA18956 nsv510537 X 56236997 56242997 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621370,nssv624096,nssv622197 M 4 0 3 "" NA10860,NA15510,NA18994 nsv524276 X 56252742 56326334 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700174 S 2026 0 1 "" nsv520834 X 56383669 56387981 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv676276,nssv690621 M 2026 2 0 "" nsv6916 X 56436916 56481775 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8728 S 9 0 1 "" NA12156 nsv510538 X 56469245 56475245 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624097,nssv618475 M 4 0 2 "" CHM,NA18994 nsv442806 X 56544933 56555726 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv2446e1 X 56622090 56770769 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv23532,essv21823,essv16025,essv12719,essv4032,essv2617,essv19750,essv5462,essv24283,essv24923,essv22912,essv1365,essv22032,essv23253,essv19601,essv15819,essv8941,essv11174,essv7428,essv3378,essv18334,essv12819,essv9183,essv22633,essv7797,essv5366,essv8606,essv9895,essv11813,essv24701,essv23513,essv4668,essv4257,essv6898,essv13708,essv14356,essv13470,essv22154,esv388,essv20937,essv9357,essv17425,essv6394,essv19219,essv23005,essv17349,essv10271,essv4869,essv9157,essv21704,essv9762,essv2848,essv3199,essv12544,essv12490,essv10091,essv17949,essv2323,essv1454,essv3169,essv13538,essv18934,essv19696,essv1970,essv20302,essv2225,essv3752,essv15408,essv3538,essv13776,essv2264,essv2672,essv3987,essv372,essv16744 M 271 0 0 "" NA06993,NA06994,NA07029,NA07034,NA10835,NA10838,NA10856,NA10857,NA11829,NA11839,NA11994,NA12003,NA12005,NA12043,NA12144,NA12154,NA12155,NA12248,NA12264,NA12752,NA12760,NA12801,NA12812,NA18501,NA18506,NA18521,NA18558,NA18561,NA18563,NA18572,NA18603,NA18605,NA18622,NA18623,NA18632,NA18635,NA18853,NA18856,NA18860,NA18863,NA18872,NA18914,NA18940,NA18944,NA18945,NA18953,NA18959,NA18960,NA18961,NA18965,NA18966,NA18967,NA18970,NA18971,NA18974,NA18990,NA19007,NA19012,NA19098,NA19119,NA19120,NA19128,NA19130,NA19145,NA19153,NA19160,NA19192,NA19194,NA19200,NA19203,NA19207,NA19211,NA19223,NA19239 nsv527262 X 56641252 56657847 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703668 S 2026 1 0 "" nsv510833 X 56649022 56724758 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622634 S 4 0 1 "" NA18994 nsv508777 X 56649022 56726186 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619592,nssv620950 M 4 2 0 "" NA10860,NA15510 nsv6917 X 56668192 56713220 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6336,nssv3791 M 9 0 2 "" NA12156,NA12878 nsv6918 X 56671260 56699429 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv876,nssv1840,nssv9485,nssv5229,nssv3792,nssv11217,nssv6337 M 9 7 0 "" NA12156,NA12878,NA15510,NA18517,NA18555,NA19129,NA19240 esv32659 X 56672079 56698585 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99506 S 51 0 1 "" 22335 nsv206 X 56675410 56692297 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv206 S 1 1 0 "" NA15510 nsv9944 X 56677130 56691019 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26283,nssv25608,nssv23441,nssv26279,nssv25008,nssv27437,nssv24983,nssv28218 M 31 7 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA12155,NA18563,NA18572,NA18860,NA19007 nsv9945 X 56697990 56703473 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25631,nssv26300,nssv26296,nssv27445 M 31 4 0 Samples from several populations that are part of the HapMap project. "" NA07048,NA12155,NA18563,NA19007 nsv517497 X 56834484 56835140 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv652190,nssv655599,nssv669767,nssv662038 M 2026 0 4 "" nsv438132 X 56834484 56839057 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470164,nssv470165 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA18504,NA19138 esv33226 X 57031397 57043485 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99410 S 51 0 1 "" 22335 dgv514n21 X 57288184 57811755 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv519013,nsv522078 M 2026 2 0 "" nsv6919 X 57478846 57510973 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv877 S 9 1 0 "" NA19240 dgv2447e1 X 57515394 57773429 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv14867,essv8729,essv15880,essv12545,essv13657,essv12791,essv8626,essv16941,esv455,essv10159,essv15395,essv13008,essv12280,essv16736,essv16865,essv14292,essv12675,essv16082,essv9893 M 271 0 0 "" NA18500,NA18501,NA18522,NA18859,NA18872,NA19092,NA19098,NA19101,NA19119,NA19120,NA19130,NA19144,NA19145,NA19194,NA19203,NA19205,NA19223,NA19239 nsv9947 X 57518804 57586325 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23179 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA12872 nsv9948 X 57624754 57640964 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26923 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA19144 nsv6921 X 57630879 57632909 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv878 S 9 1 0 "" NA19240 nsv6922 X 57733280 57767830 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3793 S 9 1 0 "" NA12878 nsv519471 X 57796706 57811755 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv685922,nssv656297 M 2026 2 0 "" nsv518933 X 57796706 57825574 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696399 S 2026 1 0 "" nsv520455 X 57825574 57888612 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv671620,nssv671990 M 2026 2 0 "" nsv6923 X 57851401 57893290 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6338 S 9 0 1 "" NA12156 nsv507963 X 57951545 57957545 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621960,nssv620469 M 4 2 0 "" NA10860,NA15510 nsv507964 X 57954097 57960097 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617970 S 4 1 0 "" CHM nsv521794 X 58004445 58077672 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694565 S 2026 1 0 "" nsv818026 X 58004445 58229693 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417754 S 112 1 0 "" NA18547 nsv6924 X 58007450 58042592 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3794 S 9 1 0 "" NA12878 nsv438133 X 58078304 58083267 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470166 S 269 0 1 Samples from several populations that are part of the HapMap project. "" NA18632 nsv6925 X 58146822 58191678 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8730 S 9 0 1 "" NA12156 nsv438134 X 58346495 58366268 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470167 S 269 0 1 Samples from several populations that are part of the HapMap project. "" NA18501 nsv818027 X 61711777 61723849 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417757,nssv1418335 M 112 2 0 "" NA18593,NA19093 nsv520427 X 61711777 61957142 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv677076,nssv687917,nssv683721,nssv671363,nssv691577 M 2026 5 0 "" nsv508778 X 61961340 61971722 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623590 S 4 1 0 "" NA18994 nsv507965 X 61964276 61970276 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617971,nssv620470 M 4 2 0 "" CHM,NA15510 dgv2448e1 X 61984759 62329082 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv283,essv22882 M 271 0 0 "" NA12760 nsv528200 X 62006834 62063140 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704760 S 2026 1 0 "" nsv6926 X 62049666 62082964 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3795 S 9 1 0 "" NA12878 nsv469778 X 62130137 62294591 CNV Gain Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649799 M 265 3 0 Samples from several populations that are part of the HapMap project. "" essv17439 X 62134485 62329082 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12043 nsv510929 X 62172651 62211685 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624329,nssv621615,nssv622396 M 4 0 0 "" NA10860,NA15510,NA18994 nsv507966 X 62186323 62192323 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617972 S 4 1 0 "" CHM nsv510539 X 62191697 62197697 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618476 S 4 0 1 "" CHM nsv442807 X 62240658 62288847 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" esv33047 X 62256398 62287161 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100632,essv97894,essv101646,essv97128 M 51 4 0 "" 21656,21837,21909,22075 nsv6927 X 62978416 63012862 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2832 S 9 1 0 "" NA18555 nsv6928 X 63056524 63091555 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv879 S 9 1 0 "" NA19240 nsv521560 X 63066625 63248873 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698175 S 2026 1 0 "" nsv6929 X 63251143 63273184 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv880,nssv5230 M 9 2 0 "" NA19129,NA19240 dgv2449e1 X 63292574 63919710 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv11068,esv875 M 271 0 0 "" NA19138 essv12363 X 63321820 63666298 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19138 nsv6930 X 63391701 63424620 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1841 S 9 1 0 "" NA18555 nsv818029 X 63419580 63570433 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416997 S 112 1 0 "" NA19138 nsv442808 X 63508888 63517881 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv438135 X 63790842 63838340 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470168 S 269 0 1 Samples from several populations that are part of the HapMap project. "" NA18995 nsv526117 X 63824408 63836930 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702367 S 2026 0 1 "" nsv6932 X 64884255 64915867 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv881 S 9 1 0 "" NA19240 nsv6933 X 65006292 65039290 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8731 S 9 1 0 "" NA12156 nsv6934 X 65041293 65074274 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6339 S 9 1 0 "" NA12156 nsv520630 X 65489100 65800048 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704733,nssv673360,nssv704867,nssv682762 M 2026 1 3 "" nsv507967 X 65699412 65705412 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617973,nssv620471,nssv621961 M 4 3 0 "" CHM,NA10860,NA15510 nsv508780 X 65723113 65723113 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623592 S 4 1 0 "" NA18994 nsv6935 X 65726037 65770730 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8732 S 9 0 1 "" NA12156 nsv424856 X 65813609 65814529 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv443434 M 24 "" nsv438136 X 66021366 66447240 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470175,nssv470173,nssv470172,nssv470171,nssv470170,nssv470169 M 269 0 5 Samples from several populations that are part of the HapMap project. "" NA18500,NA18501,NA18502,NA18503,NA18504 nsv510540 X 66090281 66096281 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618477,nssv624098,nssv622198,nssv621371 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv527836 X 66188450 66459416 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704334 S 2026 1 0 "" essv22087 X 66282690 66582954 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12154 dgv2450e1 X 66282690 67102115 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv801,essv24615 M 271 0 0 "" NA12875 nsv516884 X 66356764 66439297 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv685681,nssv682508,nssv654682,nssv674865 M 2026 4 0 "" nsv9949 X 66439794 66442469 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28220 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18860 nsv818030 X 66499227 67092321 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1415801 S 112 1 0 "" NA12875 nsv6936 X 66748407 66779871 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv11218 S 9 1 0 "" NA15510 nsv9950 X 66881715 66913387 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23497,nssv26529,nssv26934,nssv23469 M 31 0 3 Samples from several populations that are part of the HapMap project. "" NA18572,NA19144,NA19173 nsv6937 X 66884624 66918853 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3796,nssv1842 M 9 0 2 "" NA12878,NA18555 nsv517446 X 67079149 67186744 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv691931,nssv652040,nssv678921,nssv704874,nssv662791,nssv661435,nssv672910,nssv682821,nssv666916,nssv678117,nssv696779,nssv658941,nssv675916,nssv680951 M 2026 14 0 "" nsv6938 X 67084921 67129224 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1843 S 9 0 1 "" NA18555 nsv6939 X 67148758 67194023 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8733 S 9 0 1 "" NA12156 nsv6940 X 67442675 67476458 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8734 S 9 1 0 "" NA12156 nsv6941 X 67600830 67634079 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1844 S 9 1 0 "" NA18555 nsv6943 X 67640733 67677284 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2833,nssv882 M 9 2 0 "" NA18555,NA19240 nsv516469 X 67643116 67952437 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv655600,nssv670035,nssv660025,nssv690732,nssv681149,nssv668574,nssv657468,nssv662943,nssv660284 M 2026 9 0 "" nsv6944 X 67690664 67722404 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8735 S 9 0 1 "" NA12156 nsv519568 X 67996378 68054195 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701611,nssv656907,nssv692698,nssv692886 M 2026 3 1 "" nsv528655 X 68054195 68106781 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705289 S 2026 1 0 "" nsv528197 X 68106781 68125597 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704756 S 2026 1 0 "" dgv515n21 X 68168884 68183562 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv524851,nsv518868 M 2026 2 0 "" nsv527002 X 68188186 68203869 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703377 S 2026 1 0 "" nsv525710 X 68239846 68255848 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701872 S 2026 1 0 "" nsv6945 X 68365901 68373759 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3797 S 9 1 0 "" NA12878 nsv527003 X 68557496 68561891 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703378 S 2026 1 0 "" nsv425341 X 68609780 68609780 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv443919 M 24 "" esv33259 X 68619101 68619686 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100863,essv99779 M 51 2 0 "" 21656,22086 esv33223 X 68621285 68621642 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100079 S 51 0 1 "" 22086 nsv6946 X 68625748 68658652 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6340 S 9 1 0 "" NA12156 nsv6947 X 68668184 68712865 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8737 S 9 0 1 "" NA12156 nsv524859 X 68711519 68840588 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700863 S 2026 1 0 "" nsv521471 X 68726702 68910583 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698082 S 2026 0 1 "" nsv526923 X 68796342 68824616 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703287 S 2026 1 0 "" nsv520990 X 68919122 68976551 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv679243,nssv685190 M 2026 2 0 "" nsv6948 X 68954026 68988725 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2834 S 9 1 0 "" NA18555 nsv6949 X 69040065 69073814 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8738 S 9 1 0 "" NA12156 nsv519741 X 69192913 69241768 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697023 S 2026 1 0 "" nsv520416 X 69192913 69247429 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697403 S 2026 0 1 "" nsv527253 X 69222534 69247429 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703657 S 2026 1 0 "" nsv522033 X 69236055 69248293 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694802 S 2026 1 0 "" nsv519108 X 69260496 69261963 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696584 S 2026 0 1 "" nsv525258 X 69261796 69285075 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701357 S 2026 1 0 "" nsv425219 X 69376383 69376480 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv443797 M 24 "" nsv6950 X 69396940 69430707 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8739 S 9 1 0 "" NA12156 esv33082 X 69423556 70891054 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101708,essv97151,essv100013,essv99146,essv99499 M 51 0 5 "" 21909,22075,22086,22275,22335 nsv6951 X 69512079 69531406 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1845 S 9 0 1 "" NA18555 nsv517078 X 69548879 69904095 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv655536,nssv678486,nssv673361,nssv664119,nssv685682,nssv676367,nssv688356,nssv666887,nssv690519,nssv670446,nssv669990,nssv670089,nssv670022,nssv683300,nssv683661,nssv668288,nssv656908,nssv657733,nssv675714,nssv677228,nssv653741,nssv691177,nssv664152,nssv684706,nssv663554,nssv690319,nssv686519,nssv661775,nssv704926,nssv693455,nssv683315,nssv685786,nssv694750,nssv652128,nssv703917,nssv671216,nssv672025,nssv688476,nssv674866,nssv674114,nssv682194,nssv684114,nssv673040,nssv661622,nssv662504,nssv652952 M 2026 46 0 "" nsv510931 X 69805832 69972080 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624330 S 4 0 0 "" NA18994 nsv507968 X 69891879 69897879 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621962 S 4 1 0 "" NA10860 nsv425085 X 69900012 69900066 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv443663 M 24 "" nsv6952 X 70045892 70080404 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv883 S 9 1 0 "" NA19240 nsv508781 X 70208746 70289113 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620951 S 4 1 0 "" NA15510 nsv425542 X 70210702 70213082 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv444120 M 24 "" nsv6954 X 70592723 70626540 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv884 S 9 1 0 "" NA19240 nsv6955 X 70621616 70658723 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8740 S 9 0 1 "" NA12156 essv6290 X 70654274 70864233 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18636 dgv2451e1 X 70654274 71083437 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv16201,esv345,essv11761 M 271 0 0 "" NA18504,NA19161 nsv9951 X 70655953 70700220 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27533 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18504 dgv516n21 X 70669782 70893252 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv523166,nsv520952 M 2026 0 3 "" nsv7449 X 70687138 70838703 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3798 S 9 0 0 "" NA12878 nsv9952 X 70705657 70742677 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27541 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18504 nsv9953 X 70739871 70747400 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26317,nssv26543,nssv25654,nssv25033,nssv25890,nssv28222,nssv27549 M 31 5 2 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA18504,NA18853,NA18860,NA19007,NA19173 nsv9954 X 70744597 70781657 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27557 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18504 nsv9955 X 70787631 70792434 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27565 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18504 nsv507969 X 70886900 70892900 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617974,nssv620472,nssv621963 M 4 3 0 "" CHM,NA10860,NA15510 nsv517419 X 70891379 70927126 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv690058,nssv678286,nssv659347,nssv682509,nssv651963,nssv684178 M 2026 6 0 "" dgv270n6 X 70906242 70906569 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv425554,nsv424935 M 24 "" nsv6956 X 70965499 71010804 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8741 S 9 0 1 "" NA12156 nsv525711 X 71106121 71127609 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701873 S 2026 1 0 "" nsv6957 X 71479256 71513378 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3799 S 9 1 0 "" NA12878 nsv7450 X 71724180 71965812 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9778,nssv6341,nssv6342 M 9 0 0 "" NA12156,NA18507 nsv7451 X 71975743 72108096 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5232,nssv5231,nssv885 M 9 0 0 "" NA19129,NA19240 nsv508782 X 71994012 72031304 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618148 S 4 1 0 "" CHM nsv519269 X 72028372 72041426 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696758 S 2026 1 0 "" nsv507970 X 72064712 72070712 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617975 S 4 1 0 "" CHM nsv818031 X 72403664 72421471 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417761 S 112 1 0 "" NA18978 nsv6958 X 72593864 72622375 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9780,nssv886 M 9 0 2 "" NA18507,NA19240 nsv6959 X 72894794 72932894 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3800 S 9 0 1 "" NA12878 nsv6960 X 72954242 72969664 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6343 S 9 1 0 "" NA12156 nsv520605 X 73332348 73352497 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv674965,nssv704597,nssv673041 M 2026 3 0 "" nsv521472 X 73439436 73661122 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698083 S 2026 1 0 "" nsv424889 X 73462102 73462102 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv443467 M 24 "" nsv507971 X 73500321 73506321 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621964,nssv620473 M 4 2 0 "" NA10860,NA15510 nsv425323 X 74382759 74382821 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv443901 M 24 "" esv2752334 X 74570908 75033157 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6988571,essv6982702 M 771 1 0 "" BEC_580 nsv6961 X 74662162 74706877 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8742 S 9 0 1 "" NA12156 nsv6962 X 75002307 75042072 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8744 S 9 0 1 "" NA12156 nsv527422 X 75048373 75156640 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703860 S 2026 1 0 "" nsv6963 X 75705689 75737256 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6344 S 9 1 0 "" NA12156 dgv2452e1 X 75852421 75934438 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1005,essv24033 M 271 0 0 "" NA12873 nsv510541 X 75874098 75880098 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622199 S 4 0 1 "" NA10860 nsv438138 X 75912698 75927094 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470176 S 269 0 1 Samples from several populations that are part of the HapMap project. "" NA12864 nsv515864 X 75912698 75927094 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv658616,nssv687572,nssv695479,nssv660663,nssv668324,nssv668483,nssv676243,nssv665062,nssv667991 M 2026 0 9 "" essv19800 X 75918345 75923773 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12864 nsv442809 X 75920151 75923773 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv508783 X 76173733 76203950 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619593,nssv623593 M 4 2 0 "" NA10860,NA18994 nsv510542 X 76318969 76324969 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618478 S 4 0 1 "" CHM nsv6967 X 76348431 76382166 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv887 S 9 1 0 "" NA19240 dgv2453e1 X 77031055 77115217 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv12152,esv299 M 271 0 0 "" NA19101 nsv510834 X 77410290 77431169 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618868 S 4 0 1 "" NA10860 dgv517n21 X 77468584 77930223 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv528728,nsv521599 M 2026 2 0 "" nsv6968 X 77469877 77500644 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5233 S 9 1 0 "" NA19129 nsv510835 X 77501117 77588213 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618869 S 4 0 1 "" NA10860 nsv510836 X 77602155 77632064 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622635 S 4 0 1 "" NA18994 nsv510837 X 78097141 78163350 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622636 S 4 0 1 "" NA18994 nsv510543 X 78193938 78199938 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622200 S 4 0 1 "" NA10860 nsv507972 X 78268347 78274347 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617976 S 4 1 0 "" CHM nsv519126 X 78392889 78435323 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696604 S 2026 1 0 "" nsv520140 X 78450412 78539523 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697244 S 2026 1 0 "" nsv518181 X 78542575 78745121 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695602 S 2026 1 0 "" nsv507973 X 78643092 78649092 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621965 S 4 1 0 "" NA10860 nsv518714 X 78720416 78735254 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696165 S 2026 1 0 "" nsv519450 X 78720416 78745121 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696860 S 2026 1 0 "" nsv6969 X 78724077 78737732 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3803 S 9 0 1 "" NA12878 nsv510838 X 78727421 78745946 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618870 S 4 0 1 "" NA10860 nsv526654 X 78735254 78763172 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702982 S 2026 1 0 "" nsv424916 X 78752594 78754980 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv443494 M 24 "" dgv2454e1 X 78897478 78910649 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1072,essv19071 M 271 0 0 "" NA11830 nsv438139 X 78909191 78910174 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470178,nssv470177 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA10854,NA10856 nsv525585 X 78909191 78910174 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701724 S 2026 0 1 "" nsv525862 X 78934336 79004518 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702058 S 2026 1 0 "" esv2752337 X 78935733 79044603 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6986181,essv6982463 M 771 1 0 "" BEC_447 nsv526679 X 78951593 78999748 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703011 S 2026 1 0 "" nsv508784 X 79019428 79061040 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619594,nssv620952,nssv623594 M 4 3 0 "" NA10860,NA15510,NA18994 nsv521266 X 79037346 79081124 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv691093,nssv690320 M 2026 2 0 "" nsv6970 X 79040422 79065082 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10717 S 9 1 0 "" NA18956 nsv425516 X 79044382 79044446 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv444094 M 24 "" nsv6971 X 79142357 79175089 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6346 S 9 1 0 "" NA12156 nsv518523 X 79144065 79281873 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695964 S 2026 1 0 "" nsv510544 X 79286081 79292081 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618479 S 4 0 1 "" CHM nsv6972 X 79431777 79460946 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5234 S 9 1 0 "" NA19129 nsv818032 X 79555396 79592079 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417958 S 112 1 0 "" NA18852 nsv524776 X 79709314 79818952 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700767 S 2026 1 0 "" esv33127 X 79795763 80176286 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100702 S 51 0 1 "" 21656 nsv528109 X 79798768 79818952 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704651 S 2026 1 0 "" nsv510839 X 79982493 80056857 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618871 S 4 0 1 "" NA10860 nsv6973 X 80324504 80358858 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv888 S 9 1 0 "" NA19240 nsv6974 X 80432527 80477416 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8745 S 9 0 1 "" NA12156 nsv507974 X 80698107 80704107 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620474,nssv623088,nssv621966,nssv617977 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv6975 X 80885905 80926899 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5235,nssv1846,nssv3804 M 9 0 3 "" NA12878,NA18555,NA19129 nsv510840 X 80902106 80924348 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618872 S 4 0 1 "" NA10860 nsv519858 X 80959493 81082825 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697089 S 2026 1 0 "" nsv424907 X 80978807 80978807 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv443485 M 24 "" nsv6976 X 80981182 80983592 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10718 S 9 1 0 "" NA18956 nsv9956 X 81188859 81225007 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27573 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18504 nsv438140 X 81202485 81218114 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470180,nssv470179 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA18504,NA19103 nsv442810 X 81202918 81218289 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv517353 X 81205195 81209622 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv653230,nssv665375,nssv665142,nssv651802,nssv680076,nssv659793,nssv661095,nssv673416,nssv658199,nssv664718,nssv659410,nssv665509,nssv685327,nssv674325,nssv677254,nssv676953,nssv670673,nssv671140,nssv663998,nssv668610,nssv686327,nssv677012,nssv682548 M 2026 0 23 "" nsv6978 X 81396052 81440809 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8746 S 9 0 1 "" NA12156 nsv525819 X 81504071 82082893 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702005 S 2026 1 0 "" nsv6979 X 81710219 81741624 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6347 S 9 1 0 "" NA12156 nsv522910 X 81755699 81817383 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698569 S 2026 1 0 "" nsv510841 X 81771699 81821181 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618873,nssv622637 M 4 0 2 "" NA10860,NA18994 nsv6980 X 81783316 81797771 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3805 S 9 0 1 "" NA12878 nsv6981 X 81821482 81856605 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3806 S 9 1 0 "" NA12878 nsv6982 X 81963837 81998285 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv889 S 9 1 0 "" NA19240 nsv510842 X 82567948 82610591 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618874 S 4 0 1 "" NA10860 nsv9958 X 83126742 83131756 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23525 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18572 nsv425297 X 83253059 83253126 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv443875 M 24 "" nsv519860 X 83320595 83726808 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697090 S 2026 1 0 "" nsv520647 X 83571699 83770071 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv673525,nssv695480,nssv700025,nssv690768,nssv696106 M 2026 5 0 "" nsv510843 X 83630222 83690766 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618875 S 4 0 1 "" NA10860 nsv6983 X 83644594 83689430 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8747 S 9 0 1 "" NA12156 nsv510844 X 83804488 83858712 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622638 S 4 0 1 "" NA18994 nsv6984 X 84257754 84280695 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1847 S 9 1 0 "" NA18555 nsv424875 X 84568306 84574352 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv443453 M 24 "" nsv519786 X 84710901 84969107 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696662,nssv671840,nssv658617,nssv703256 M 2026 4 0 "" nsv438141 X 84993285 85006274 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470182,nssv470181 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA18532,NA18540 nsv510545 X 85063496 85069496 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622201,nssv618480 M 4 0 2 "" CHM,NA10860 nsv438142 X 85131657 85138458 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470183,nssv470184 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA18532,NA18540 nsv510845 X 85393874 85417323 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617447,nssv620039,nssv618876,nssv622640 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv6985 X 85395213 85442166 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6348,nssv890,nssv1848,nssv9928,nssv10719 M 9 0 5 "" NA12156,NA18507,NA18555,NA18956,NA19240 nsv525697 X 85456470 85476258 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701857 S 2026 1 0 "" nsv6986 X 85492833 85497330 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6349 S 9 1 0 "" NA12156 nsv425495 X 85531186 85531258 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv444073 M 24 "" nsv525946 X 85656856 85767255 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702152 S 2026 1 0 "" nsv520837 X 85730341 85750735 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697642 S 2026 1 0 "" nsv526936 X 85831972 85840844 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703304 S 2026 1 0 "" nsv519525 X 85831972 85903736 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694333 S 2026 1 0 "" nsv510546 X 85944255 85950255 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624099,nssv622202,nssv618481 M 4 0 3 "" CHM,NA10860,NA18994 nsv6987 X 85954126 85986186 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3807 S 9 1 0 "" NA12878 nsv519045 X 85979618 86018938 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694301 S 2026 0 1 "" nsv510547 X 86011559 86017559 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622203,nssv624100,nssv621372 M 4 0 3 "" NA10860,NA15510,NA18994 nsv522982 X 86102678 86110906 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698652 S 2026 0 1 "" nsv526382 X 86149759 86205755 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702679 S 2026 1 0 "" nsv519109 X 86271835 86276201 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696585 S 2026 1 0 "" nsv526412 X 86271835 86808586 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702712 S 2026 1 0 "" nsv526698 X 86289204 86386839 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703036 S 2026 1 0 "" nsv520678 X 86336099 86386839 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv691412,nssv690542,nssv701910,nssv673887 M 2026 4 0 "" nsv518194 X 86356117 86393445 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695618 S 2026 0 1 "" nsv520412 X 86356117 86394108 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697400 S 2026 1 0 "" nsv519271 X 86449962 86473731 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696759 S 2026 1 0 "" nsv520176 X 86473253 86668866 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699612,nssv694379,nssv671251,nssv698113,nssv687425,nssv688968,nssv661376 M 2026 7 0 "" nsv520266 X 86572486 86834993 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697315 S 2026 1 0 "" nsv521499 X 86673392 86736503 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698114 S 2026 1 0 "" nsv6989 X 86673921 86707965 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3808,nssv8748 M 9 2 0 "" NA12156,NA12878 nsv521252 X 86858455 86929007 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697869 S 2026 1 0 "" nsv521305 X 86927036 86929007 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697911 S 2026 0 1 "" nsv521636 X 87046846 87211924 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698254 S 2026 1 0 "" nsv528293 X 87214349 87298465 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704868 S 2026 1 0 "" nsv6990 X 87250624 87285148 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2835 S 9 1 0 "" NA18555 dgv518n21 X 87291851 87433155 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv523682,nsv518355 M 2026 2 0 "" nsv519179 X 87365771 87443252 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696663 S 2026 1 0 "" nsv522431 X 87391895 87398656 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705786 S 2026 1 0 "" nsv527086 X 87458632 87486132 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703465 S 2026 1 0 "" nsv527087 X 87817300 87820284 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703466 S 2026 1 0 "" dgv519n21 X 87820284 88059044 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv528918,nsv527903 M 2026 2 0 "" nsv507975 X 87838945 87844945 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621967,nssv620475,nssv617978,nssv623089 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv526633 X 88042743 88046354 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702955 S 2026 1 0 "" nsv528538 X 88046354 88070098 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705150 S 2026 1 0 "" nsv520439 X 88058928 88059044 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697420 S 2026 0 1 "" nsv425091 X 88099421 88099421 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv443669 M 24 "" nsv507976 X 88207219 88213219 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617979,nssv620476 M 4 2 0 "" CHM,NA15510 nsv526634 X 88250325 88438242 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702956 S 2026 1 0 "" nsv510885 X 88256241 88281128 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618686 S 4 0 0 "" CHM nsv508785 X 88262620 88281128 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619596,nssv620953,nssv623595 M 4 3 0 "" NA10860,NA15510,NA18994 nsv433339 X 88484340 88600220 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463220 S 9 0 1 "" NA15510 nsv507977 X 88763559 88769559 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623090 S 4 1 0 "" NA18994 dgv2455e1 X 88800734 89069512 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv4543,esv1396 M 271 0 0 "" NA18566 dgv2456e1 X 89260661 89673776 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv228,essv2276 M 271 0 0 "" NA18966 nsv6991 X 89316378 89354413 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6350,nssv3809,nssv10721,nssv891,nssv1849,nssv5236 M 9 6 0 "" NA12156,NA12878,NA18555,NA18956,NA19129,NA19240 nsv508786 X 89324202 89350408 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619597 S 4 1 0 "" NA10860 nsv507978 X 89515199 89521199 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621968,nssv620477 M 4 2 0 "" NA10860,NA15510 nsv507979 X 89532141 89538141 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621969 S 4 1 0 "" NA10860 nsv507980 X 89536857 89542857 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621970 S 4 1 0 "" NA10860 nsv438143 X 89703483 89714676 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470187,nssv470189,nssv470188 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA12003,NA12761 nsv507981 X 89825655 89831655 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620478 S 4 1 0 "" NA15510 nsv6992 X 89910513 89941976 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3810 S 9 1 0 "" NA12878 dgv2457e1 X 89957981 90252381 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv6571,esv528 M 271 0 0 "" NA18621 nsv9959 X 89977589 89985420 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25676 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA07048 essv6070 X 90003377 90134018 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18621 nsv528258 X 90110559 91297943 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704824 S 2026 1 0 "" nsv527159 X 90163081 90411394 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703553 S 2026 1 0 "" nsv521121 X 90374146 90537796 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697800 S 2026 1 0 "" nsv526620 X 90410857 90665640 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702940 S 2026 1 0 "" nsv516611 X 90477950 90537796 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv669524,nssv674070,nssv678922 M 2026 3 0 "" nsv510846 X 90502512 90521676 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622641 S 4 0 1 "" NA18994 nsv433340 X 90550583 90640082 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463221 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA19129 nsv438144 X 90777601 90784473 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470194,nssv470193,nssv470191,nssv470190,nssv470192 M 269 0 5 Samples from several populations that are part of the HapMap project. "" NA18871,NA19093,NA19094,NA19138,NA19145 nsv433341 X 90905530 91005792 CNV Loss Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463222 S 9 0 1 Samples from several populations that are part of the HapMap project. "" NA19240 nsv507982 X 90974568 90980568 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620479,nssv623091 M 4 2 0 "" NA15510,NA18994 nsv510548 X 91488243 91494243 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618482,nssv622204 M 4 0 2 "" CHM,NA10860 nsv522787 X 92075572 92594698 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698431 S 2026 1 0 "" nsv438145 X 92120293 92144054 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470196,nssv470195 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA19159,NA19200 nsv516563 X 92310305 92522345 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv658585,nssv704156,nssv678487,nssv669180,nssv700145,nssv670218,nssv672609,nssv703698,nssv697303 M 2026 9 0 "" nsv521321 X 92510431 92594698 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697928 S 2026 1 0 "" nsv6993 X 92597595 92647575 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6351 S 9 0 1 "" NA12156 nsv510847 X 92601449 92608256 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618878 S 4 0 1 "" NA10860 nsv425078 X 92602445 92607652 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv443656 M 24 "" nsv6994 X 92876887 92909216 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6352 S 9 1 0 "" NA12156 nsv510848 X 93079331 93128572 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618879 S 4 0 1 "" NA10860 nsv527156 X 93157946 93235723 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703548 S 2026 1 0 "" nsv438146 X 93207718 93210044 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470202,nssv470199,nssv470198,nssv470201,nssv470200 M 269 0 5 Samples from several populations that are part of the HapMap project. "" NA10838,NA18503,NA18506,NA18856,NA18945 nsv517706 X 93209739 93210044 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv684920,nssv683361,nssv675396,nssv665510,nssv693323,nssv693888,nssv682472,nssv668226,nssv670625,nssv654795,nssv656345,nssv686734,nssv693127,nssv666709,nssv657090,nssv652915,nssv658439,nssv693978,nssv682618,nssv653105 M 2026 0 20 "" nsv442811 X 93228706 93235719 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv519792 X 93418951 94050366 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697129,nssv685411,nssv658666,nssv706003,nssv696689,nssv690300,nssv673464,nssv661264 M 2026 6 2 "" nsv6995 X 93665983 93699085 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5237 S 9 1 0 "" NA19129 nsv507983 X 93921224 93927224 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623092 S 4 1 0 "" NA18994 nsv524998 X 94120536 94182134 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701029 S 2026 1 0 "" nsv525744 X 94144884 94187595 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701911 S 2026 1 0 "" nsv517225 X 94187595 94227106 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv657544,nssv686591,nssv671280,nssv664375,nssv667192,nssv691149,nssv652414,nssv651860,nssv685832,nssv654066,nssv656739,nssv654488,nssv689163,nssv679991 M 2026 14 0 "" nsv520642 X 94203825 94232860 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694392 S 2026 0 1 "" nsv525572 X 94418312 94781407 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701711 S 2026 0 1 "" nsv522611 X 94461927 94681015 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv706004 S 2026 1 0 "" nsv518968 X 94546776 94637395 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696436 S 2026 1 0 "" nsv6996 X 94641106 94659578 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5238 S 9 1 0 "" NA19129 nsv518637 X 94726308 94821607 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696086 S 2026 1 0 "" nsv6997 X 95092536 95133393 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3811,nssv6354,nssv893,nssv5240 M 9 0 4 "" NA12156,NA12878,NA19129,NA19240 nsv510849 X 95107470 95127466 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620040,nssv618880,nssv617448 M 4 0 3 "" CHM,NA10860,NA15510 nsv520414 X 95113363 95191738 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697401 S 2026 1 0 "" nsv6998 X 95308346 95353637 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8749 S 9 0 1 "" NA12156 nsv425099 X 95343501 95352937 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv443677 M 24 "" nsv507984 X 95413390 95419390 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623093 S 4 1 0 "" NA18994 nsv519679 X 95596964 95640523 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698961,nssv657545,nssv688981 M 2026 3 0 "" nsv521390 X 95732399 95741986 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694441 S 2026 1 0 "" nsv507985 X 95802858 95808858 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620480,nssv617980 M 4 2 0 "" CHM,NA15510 dgv520n21 X 95878191 96210020 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv521409,nsv515760 M 2026 9 0 "" nsv510549 X 95885838 95891838 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618483 S 4 0 1 "" CHM nsv507986 X 96151996 96157996 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620481 S 4 1 0 "" NA15510 esv32603 X 96200779 96201008 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv96590 S 51 0 1 "" 22011 nsv7000 X 96416917 96440980 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3812 S 9 1 0 "" NA12878 nsv818033 X 96594785 96636850 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417756 S 112 1 0 "" NA18577 nsv523507 X 96663713 96749311 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699278 S 2026 1 0 "" esv32779 X 96736044 96742773 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99530 S 51 1 0 "" 22335 dgv2458e1 X 96741719 96861762 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv22973,essv4263,esv94 M 271 0 0 "" NA07357,NA18603 nsv438147 X 96777270 96791546 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470203 S 269 0 1 Samples from several populations that are part of the HapMap project. "" NA18611 nsv516457 X 96780150 96786934 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv669265,nssv668522,nssv669768 M 2026 3 0 "" nsv517286 X 96802798 96908234 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv667786,nssv659698,nssv678547,nssv693223,nssv676651,nssv654558,nssv678996,nssv661623,nssv690770,nssv681206,nssv654819,nssv658401,nssv678980,nssv681708,nssv672153,nssv685683,nssv664701,nssv679634,nssv666984,nssv654202 M 2026 13 7 "" nsv9960 X 96817712 96822407 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26587 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19173 nsv525975 X 97129976 97214673 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702193 S 2026 1 0 "" nsv7001 X 97149332 97192808 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8750 S 9 0 1 "" NA12156 nsv818034 X 97155973 97239520 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417762 S 112 1 0 "" NA18978 nsv520216 X 97174974 97415442 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv663635,nssv661937 M 2026 2 0 "" nsv7002 X 97356530 97384844 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10722 S 9 1 0 "" NA18956 nsv524372 X 97507977 97562771 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700284 S 2026 0 1 "" nsv526383 X 97509625 97644027 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702680 S 2026 1 0 "" nsv525843 X 97509625 97800641 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702036 S 2026 1 0 "" nsv524646 X 97574098 97763216 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700612 S 2026 1 0 "" nsv519242 X 97620449 97639920 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696735 S 2026 1 0 "" dgv521n21 X 97620449 97744231 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv525519,nsv526259,nsv517679 M 2026 8 0 "" nsv818035 X 97630011 97716095 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417763 S 112 1 0 "" NA18978 nsv525739 X 97639920 97744231 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701904 S 2026 0 1 "" nsv522254 X 97703271 97763216 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695034 S 2026 1 0 "" nsv520300 X 97703271 97902558 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697335 S 2026 1 0 "" nsv7003 X 97742675 97788060 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6355 S 9 0 1 "" NA12156 nsv7004 X 97944468 97988973 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4620 S 9 0 1 "" NA19129 nsv424959 X 98025438 98031204 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv443537 M 24 "" nsv7005 X 98050773 98077904 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8752,nssv894 M 9 2 0 "" NA12156,NA19240 nsv7006 X 98225785 98293698 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5241,nssv8753 M 9 0 2 "" NA12156,NA19129 esv2752340 X 98292946 99574190 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6985909,essv6985910 M 771 1 0 "" SPC_83 nsv510550 X 98937437 98943437 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624101 S 4 0 1 "" NA18994 nsv7007 X 99287437 99358435 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1850,nssv8754 M 9 0 2 "" NA12156,NA18555 nsv7008 X 99547278 99555666 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8755 S 9 0 1 "" NA12156 nsv510850 X 99788666 99888851 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622643 S 4 0 1 "" NA18994 nsv7009 X 99834385 99866871 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6356 S 9 1 0 "" NA12156 nsv7011 X 99919105 99952075 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1851 S 9 1 0 "" NA18555 nsv7012 X 100026193 100060831 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv895 S 9 1 0 "" NA19240 nsv517937 X 100044083 100076503 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695349 S 2026 1 0 "" nsv515758 X 100048450 100099700 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697431,nssv664698,nssv657825 M 2026 3 0 "" nsv7013 X 100055936 100100942 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8756 S 9 0 1 "" NA12156 nsv425546 X 100151315 100151461 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv444124 M 24 "" nsv524411 X 100252109 100438782 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700333 S 2026 0 1 "" nsv7452 X 100624868 100710122 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5242,nssv11219,nssv10723,nssv6357 M 9 0 0 "" NA12156,NA15510,NA18956,NA19129 nsv524711 X 100657453 100687002 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700696 S 2026 1 0 "" nsv522728 X 100657453 100717211 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698360 S 2026 1 0 "" nsv207 X 100671457 100701321 OTHER Inversion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv207 S 1 0 0 "" NA15510 nsv7014 X 100862300 100892270 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3814,nssv9486,nssv3813 M 9 2 0 "" NA12878,NA18517 nsv7015 X 100863522 100908221 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8757 S 9 0 1 "" NA12156 nsv7016 X 101049823 101082893 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8758 S 9 1 0 "" NA12156 nsv469670 X 101081456 101247635 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649600 M 265 0 0 Samples from several populations that are part of the HapMap project. "" nsv526716 X 101643878 101995455 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703056 S 2026 1 0 "" nsv7017 X 101731752 101764452 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5243 S 9 1 0 "" NA19129 esv32775 X 102458813 102459234 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100646 S 51 1 0 "" 21656 dgv2459e1 X 102888546 103261206 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv20764,esv829 M 271 0 0 "" NA12146 nsv7018 X 102943370 102972397 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3815,nssv6358 M 9 0 2 "" NA12156,NA12878 nsv469772 X 102989397 103181829 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649793 M 265 0 0 Samples from several populations that are part of the HapMap project. "" nsv519626 X 102994212 103209216 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv672582,nssv677802,nssv673366,nssv671922,nssv657215,nssv683117 M 2026 6 0 "" nsv7453 X 103001250 103168486 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1853,nssv3817,nssv11221,nssv3818,nssv5244,nssv9781,nssv11220,nssv896,nssv1852,nssv11222,nssv5245,nssv1854,nssv3816 M 9 0 0 "" NA12878,NA15510,NA18507,NA18555,NA19129,NA19240 nsv208 X 103034605 103081920 OTHER Inversion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv208 S 1 0 0 "" NA15510 nsv510851 X 103048473 103064076 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622644,nssv617449 M 4 0 2 "" CHM,NA18994 dgv2460e1 X 103049195 103124000 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv19368,essv19301,essv23845 M 271 0 0 "" NA07019,NA07022 dgv5n1 X 103054538 103142002 OTHER Inversion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis nsv210,nsv209 M 1 0 0 "" NA15510 esv32549 X 103073810 103075095 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv94902,essv99222 M 51 0 2 "" 22231,22275 esv33973 X 103075310 103075702 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100879 S 51 0 1 "" 21656 esv2750614 X 103083808 103085167 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100706 S 51 1 0 "" 21656 esv32540 X 103085127 103085358 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100950,essv95132,essv101367,essv96167,essv96470,essv94172 M 51 6 0 "" 21693,21721,21805,22007,22261,22394 esv33789 X 103085358 103085494 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100889 S 51 0 1 "" 21656 esv32928 X 103085599 103086086 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101070,essv95057,essv101299,essv100190,essv96312 M 51 0 5 "" 21693,21721,21805,22286,22371 nsv508787 X 103099847 103111819 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623596,nssv618149 M 4 2 0 "" CHM,NA18994 nsv9961 X 103130384 103143470 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26334,nssv27453 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA12155,NA19007 nsv7019 X 103427108 103460397 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv897 S 9 1 0 "" NA19240 nsv522828 X 103482498 103499133 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698478 S 2026 1 0 "" nsv515495 X 103486507 103531148 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv667515,nssv653318,nssv665351,nssv675067 M 2026 4 0 "" nsv521379 X 103963089 103987290 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694440 S 2026 0 1 "" nsv425150 X 104058832 104058832 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv443728 M 24 "" dgv2461e1 X 104109151 104221182 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv236,essv14871 M 271 0 0 "" NA18522 nsv7020 X 104366876 104390634 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3819 S 9 1 0 "" NA12878 esv2752312 X 104756073 106173247 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6986336,essv6983047,essv6988619 M 771 1 0 "" BEC_536 nsv521259 X 104985277 105483579 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697872 S 2026 1 0 "" nsv7022 X 105054176 105088238 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv898 S 9 1 0 "" NA19240 nsv528467 X 105084506 105160522 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705069 S 2026 1 0 "" nsv7023 X 105169974 105201828 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6359 S 9 1 0 "" NA12156 nsv508788 X 105277514 105322524 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623597 S 4 1 0 "" NA18994 nsv7455 X 105289284 105377337 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv899,nssv10724,nssv9487,nssv900 M 9 0 0 "" NA18517,NA18956,NA19240 nsv7024 X 105318958 105332305 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6360 S 9 1 0 "" NA12156 nsv511084 X 105325284 105339798 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624331,nssv621616 M 4 0 0 "" NA15510,NA18994 esv33238 X 105335734 105500830 CNV Gain de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv94895 S 51 1 0 "" 22231 dgv2462e1 X 105343681 105487922 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv23238,esv359 M 271 0 0 "" NA07029 nsv9962 X 105352123 105363410 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26945,nssv25728,nssv26601,nssv25058,nssv26313,nssv27581 M 31 6 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA18504,NA18563,NA19144,NA19173 nsv7025 X 105408163 105452779 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8759 S 9 0 1 "" NA12156 nsv9963 X 105477870 105480131 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25911,nssv26956,nssv28224 M 31 0 3 Samples from several populations that are part of the HapMap project. "" NA18853,NA18860,NA19144 nsv510852 X 105741515 105750248 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618881 S 4 0 1 "" NA10860 nsv519484 X 106027635 106274853 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv656377,nssv697798,nssv701299,nssv696321,nssv696747,nssv673860 M 2026 6 0 "" nsv7026 X 106094131 106139472 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6361 S 9 0 1 "" NA12156 nsv7027 X 106250645 106282761 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1855 S 9 1 0 "" NA18555 nsv7028 X 106341353 106380200 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6362,nssv2836 M 9 2 0 "" NA12156,NA18555 nsv425009 X 106467618 106467618 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv443587 M 24 "" nsv510853 X 106492613 106597671 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622645 S 4 0 1 "" NA18994 nsv7029 X 106494249 106523999 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5246 S 9 1 0 "" NA19129 nsv7030 X 106587986 106622170 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8760 S 9 1 0 "" NA12156 nsv508789 X 106852823 106943866 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623598 S 4 1 0 "" NA18994 nsv525651 X 107016024 107050698 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701806 S 2026 1 0 "" nsv519041 X 107518051 107987305 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696510 S 2026 1 0 "" nsv7031 X 107659384 107692131 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1856 S 9 1 0 "" NA18555 nsv521532 X 107793917 107794547 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698149 S 2026 1 0 "" nsv511085 X 107817835 107826749 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618687 S 4 0 0 "" CHM nsv508791 X 107818799 107826749 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619598,nssv623599,nssv620954 M 4 3 0 "" NA10860,NA15510,NA18994 nsv507987 X 107928807 107934807 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617981,nssv621971,nssv620482 M 4 3 0 "" CHM,NA10860,NA15510 dgv2463e1 X 108585146 108787037 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv13793,esv67,essv15891 M 271 0 0 "" NA19153,NA19223 nsv7033 X 108650445 108682322 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv902 S 9 1 0 "" NA19240 nsv438149 X 108701392 108779986 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470205,nssv470210,nssv470204,nssv470209,nssv470207,nssv470206 M 269 0 6 Samples from several populations that are part of the HapMap project. "" NA18500,NA18501,NA18503,NA18504,NA19153,NA19223 nsv7034 X 108722864 108762439 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4621 S 9 0 1 "" NA19129 nsv523984 X 108723918 108772570 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699840 S 2026 1 0 "" nsv526392 X 108856163 108965909 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702691 S 2026 1 0 "" nsv7035 X 108886996 108900319 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8761 S 9 0 1 "" NA12156 nsv518116 X 109230174 109436852 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695532 S 2026 1 0 "" nsv7036 X 109290847 109335613 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8762 S 9 0 1 "" NA12156 dgv2464e1 X 109387916 109517626 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv4909,esv182 M 271 0 0 "" NA18561 nsv438150 X 109441362 109446200 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470211 S 269 0 1 Samples from several populations that are part of the HapMap project. "" NA19211 nsv7037 X 109734038 109778820 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5247 S 9 0 1 "" NA19129 nsv442813 X 109744825 109746442 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv438151 X 109745350 109747304 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470214,nssv470213,nssv470212 M 269 0 3 Samples from several populations that are part of the HapMap project. "" NA18501,NA19127,NA19160 nsv507988 X 109827935 109833935 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617982,nssv621972,nssv620483,nssv623094 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv7038 X 110454440 110488508 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8763 S 9 1 0 "" NA12156 nsv7039 X 110810393 110855459 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8764 S 9 0 1 "" NA12156 nsv7040 X 110957948 111002506 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8766 S 9 0 1 "" NA12156 nsv520386 X 110965552 110992386 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697385 S 2026 1 0 "" nsv526892 X 110970901 110977631 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703250 S 2026 1 0 "" nsv510551 X 111144319 111150319 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621374 S 4 0 1 "" NA15510 nsv516845 X 111287143 111450647 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv673645,nssv697611,nssv654397,nssv697855,nssv658812,nssv698960 M 2026 6 0 "" nsv508792 X 111343371 111384193 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620955 S 4 1 0 "" NA15510 nsv7041 X 111357983 111367500 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6363 S 9 1 0 "" NA12156 dgv522n21 X 111452609 111500499 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv521558,nsv524839 M 2026 2 0 "" nsv523375 X 111471152 111592929 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699124 S 2026 1 0 "" nsv521225 X 111484880 111496900 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697856 S 2026 1 0 "" nsv517690 X 111490673 111527107 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv652850,nssv655493,nssv657677,nssv684896,nssv675787,nssv653269 M 2026 4 2 "" nsv7042 X 111638462 111672252 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2837,nssv5248 M 9 2 0 "" NA18555,NA19129 nsv438152 X 111970767 111971561 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470215,nssv470216 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA18608,NA18633 nsv519856 X 112054366 112177968 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697088 S 2026 1 0 "" nsv515695 X 112096618 112232811 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv664443,nssv655019,nssv670087,nssv693654,nssv685785,nssv695444,nssv672651,nssv696405,nssv665961,nssv699532 M 2026 10 0 "" nsv510552 X 112186305 112192305 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624103 S 4 0 1 "" NA18994 dgv523n21 X 112232811 113645882 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv526494,nsv525517 M 2026 0 2 "" nsv527835 X 112251911 112362223 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704332 S 2026 1 0 "" nsv523905 X 112273241 112424879 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699748 S 2026 1 0 "" nsv507989 X 112345913 112351913 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623095 S 4 1 0 "" NA18994 nsv521498 X 112547930 112722912 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698112 S 2026 1 0 "" nsv526427 X 112615189 112748004 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702729 S 2026 1 0 "" nsv518865 X 112707682 112722912 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696322 S 2026 1 0 "" esv33885 X 112712605 112712647 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv96127 S 51 0 1 "" 22007 esv33702 X 112732053 112732277 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101342,essv95358,essv92683,essv99160 M 51 0 4 "" 21805,21872,21944,22275 esv33994 X 112734957 114795726 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98687,essv101105,essv94716,essv94110,essv101397,essv96964,essv97803,essv99611,essv94922,essv97980,essv100407,essv100395,essv99475 M 51 4 9 "" 21606,21618,21791,21802,21805,21817,21837,22217,22231,22259,22300,22335 nsv515718 X 112947822 113046556 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697544,nssv666620,nssv689109,nssv689387,nssv675788,nssv685432,nssv664543 M 2026 6 1 "" dgv524n21 X 113116746 113677066 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv524582,nsv521297 M 2026 2 0 "" dgv525n21 X 113192757 113408201 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv515921,nsv525161 M 2026 10 0 "" nsv521119 X 113400177 113614519 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697799 S 2026 1 0 "" nsv520153 X 113470621 113596610 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv661263,nssv690879,nssv687735,nssv663064 M 2026 4 0 "" nsv517809 X 113512703 113622887 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695214 S 2026 1 0 "" nsv518094 X 113569380 113608621 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695506 S 2026 1 0 "" nsv527347 X 113594861 114040744 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703774 S 2026 1 0 "" nsv7044 X 113709201 113753541 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1857 S 9 0 1 "" NA18555 nsv507990 X 113771103 113777103 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617983 S 4 1 0 "" CHM nsv425061 X 113819411 113819531 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv443639 M 24 "" nsv516624 X 114039143 114182111 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697388,nssv700825,nssv669634,nssv679705,nssv683445 M 2026 5 0 "" nsv7045 X 114116724 114161621 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8767 S 9 0 1 "" NA12156 nsv520351 X 114131478 114375971 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697366 S 2026 1 0 "" nsv7046 X 114322645 114358036 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1858 S 9 0 1 "" NA18555 nsv522704 X 114428750 114454628 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv706116 S 2026 1 0 "" nsv508793 X 114431409 114493990 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623600 S 4 1 0 "" NA18994 nsv7047 X 114758048 114807710 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5251 S 9 0 1 "" NA19129 dgv2465e1 X 114768844 114795257 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv106,essv2902 M 271 0 0 "" NA18953 nsv508794 X 114770114 114897643 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619600,nssv620956 M 4 2 0 "" NA10860,NA15510 nsv9964 X 114781834 114836070 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26347,nssv26966,nssv25932,nssv27461,nssv25983,nssv25750,nssv26330,nssv23235,nssv25772,nssv25083,nssv23207,nssv26614 M 31 0 8 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA12155,NA12872,NA18563,NA18853,NA19144,NA19173 nsv7048 X 114783507 114786223 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5252,nssv10725,nssv11223 M 9 3 0 "" NA15510,NA18956,NA19129 nsv7456 X 114783573 114823470 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5253,nssv3821,nssv1859 M 9 0 0 "" NA12878,NA18555,NA19129 nsv211 X 114783579 114785284 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv211 S 1 1 0 "" NA15510 nsv7049 X 114801485 114808034 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5254 S 9 1 0 "" NA19129 nsv7050 X 114808371 114823394 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6365,nssv904,nssv6366,nssv1860,nssv10726,nssv5255,nssv11224,nssv3822,nssv903 M 9 7 0 "" NA12156,NA12878,NA15510,NA18555,NA18956,NA19129,NA19240 nsv213 X 114812052 114812760 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv213 S 1 1 0 "" NA15510 nsv523201 X 114870401 114898879 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698920 S 2026 1 0 "" nsv519221 X 114870401 114921635 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696711 S 2026 1 0 "" nsv511086 X 114944242 114982539 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618630 S 4 0 0 "" CHM nsv523486 X 114944716 115025093 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699253 S 2026 1 0 "" nsv442814 X 114949837 114962520 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" esv32862 X 114951181 114954578 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101553,essv98700,essv101144,essv93942,essv94031,essv96896,essv95365,essv97378,essv99008,essv96185,essv98572,essv99567,essv100487,essv100291,essv94259 M 51 0 15 "" 21603,21606,21618,21634,21802,21817,21872,21879,21938,22007,22085,22217,22298,22300,22394 nsv7051 X 115014249 115043972 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8768 S 9 0 1 "" NA12156 dgv2466e1 X 115037017 115175870 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv1425,essv20990 M 271 0 0 "" NA10863 esv32601 X 115059066 115080842 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv95405,essv97417,essv95998,essv99358 M 51 0 4 "" 21872,21879,22127,22275 esv33392 X 115080759 115080842 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101147,essv93935,essv97850,essv92768,essv96096,essv96611,essv99598,essv94873,essv98089,essv100216,essv96344 M 51 0 11 "" 21618,21634,21837,21944,22007,22011,22217,22231,22259,22286,22371 esv33299 X 115080759 115108681 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv94779 S 51 0 1 "" 21791 nsv9965 X 115117633 115118384 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25108 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA07029 nsv528502 X 115143168 115211466 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705107 S 2026 1 0 "" nsv9966 X 115170396 115172324 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23263,nssv25133 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA12872 nsv527278 X 115177650 115240729 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703688 S 2026 1 0 "" nsv523582 X 115212513 115434155 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699371 S 2026 1 0 "" nsv527546 X 115220169 115336117 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704007 S 2026 1 0 "" nsv7052 X 115286476 115316887 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10727 S 9 1 0 "" NA18956 nsv527804 X 115398699 115592707 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704298 S 2026 1 0 "" nsv438153 X 115400994 115401661 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470217,nssv470218 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA18540,NA18943 nsv526428 X 115401661 115436840 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702730 S 2026 1 0 "" dgv526n21 X 115401661 115535503 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv524543,nsv526134 M 2026 2 0 "" nsv526363 X 115411047 115692778 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702656 S 2026 1 0 "" nsv518703 X 115413826 115436840 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696154 S 2026 1 0 "" nsv517788 X 115434155 115562108 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv680122,nssv690489,nssv704762,nssv667783,nssv664771,nssv653270,nssv655895,nssv655833,nssv702485,nssv690541 M 2026 9 1 "" nsv7053 X 115549202 115573793 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8769 S 9 0 1 "" NA12156 dgv2467e1 X 115553046 115883234 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv24104,esv628 M 271 0 0 "" NA07048 esv2422422 X 115558424 115702806 CNV Duplication Simon-Sanchez_et_al_2007 17116639 qPCR,SNP_array Illumina HumanHap300 BeadChip + Infinium Human-1 Genotyping BeadChip essv5161307 S 181 1 0 "" ND01679 nsv510854 X 115571829 115590985 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622646 S 4 0 1 "" NA18994 nsv519637 X 115574735 115624041 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv658005,nssv657311,nssv659648 M 2026 0 3 "" nsv9967 X 115711706 115832452 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25794,nssv26363,nssv28226,nssv23553 M 31 1 3 Samples from several populations that are part of the HapMap project. "" NA07048,NA18563,NA18572,NA18860 essv20086 X 115711880 115883234 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA07048 nsv516826 X 115722962 115823982 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv656627,nssv689137,nssv682666,nssv697293,nssv684918,nssv687423,nssv677350,nssv654274,nssv700362 M 2026 5 4 "" nsv7055 X 115754405 115773588 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3823 S 9 1 0 "" NA12878 nsv522618 X 115840961 115905920 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv706014 S 2026 0 1 "" nsv520858 X 115865784 115870074 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697653 S 2026 1 0 "" nsv519966 X 115905920 115909923 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697152 S 2026 0 1 "" nsv519896 X 115944464 115971865 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv683424,nssv659376 M 2026 2 0 "" nsv518423 X 116008551 116201359 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695858 S 2026 1 0 "" nsv425233 X 116010074 116010074 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv443811 M 24 "" nsv528202 X 116034391 116119908 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704763 S 2026 1 0 "" nsv527647 X 116034391 116159074 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704118 S 2026 1 0 "" nsv525567 X 116087522 116119908 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701706 S 2026 1 0 "" nsv424874 X 116236244 116236562 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv443452 M 24 "" nsv526893 X 116268158 116269730 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703251 S 2026 1 0 "" esv2752313 X 116281000 116352000 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6990111,essv6985294,essv6985293,essv6985292 M 771 0 1 "" SPC_138 nsv425389 X 116304587 116304664 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv443967 M 24 "" nsv508795 X 116698729 116757837 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623601 S 4 1 0 "" NA18994 nsv510855 X 116913016 117002862 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618882 S 4 0 1 "" NA10860 nsv526997 X 117016814 117069074 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703372 S 2026 1 0 "" nsv425528 X 117236027 117236852 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv444106 M 24 "" dgv527n21 X 117303990 117762589 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv524583,nsv517257 M 2026 7 0 "" nsv522227 X 117336506 117449965 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695004 S 2026 1 0 "" nsv425540 X 117380401 117389907 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv444118 M 24 "" nsv424884 X 117410742 117410812 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv443462 M 24 "" nsv510553 X 117424323 117430323 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622205,nssv618484 M 4 0 2 "" CHM,NA10860 nsv518389 X 118217085 118376304 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695819 S 2026 0 1 "" nsv525652 X 118402088 118481202 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701807 S 2026 1 0 "" nsv519969 X 118410635 118419208 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697153 S 2026 0 1 "" nsv425163 X 118427756 118427756 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv443741 M 24 "" nsv519187 X 118438822 118439927 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696671 S 2026 1 0 "" nsv7056 X 118655215 118696874 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6367 S 9 0 1 "" NA12156 dgv2468e1 X 118739321 118863415 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv8646,essv9137 M 271 0 0 "" NA18860,NA19239 dgv2469e1 X 118739321 119110866 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv127,essv11811 M 271 0 0 "" NA18521 nsv7057 X 118778138 118810770 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10728 S 9 1 0 "" NA18956 nsv9969 X 118815752 118841059 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28228 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18860 nsv442815 X 118817022 118839174 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv515676 X 118817026 118835883 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv675047,nssv687624,nssv661734,nssv667132,nssv683608,nssv655394,nssv669399,nssv691138,nssv689322,nssv684919,nssv664344,nssv677117,nssv680368,nssv662480,nssv686658,nssv667275,nssv693977,nssv667104,nssv667372,nssv687903,nssv690927 M 2026 21 0 "" nsv433462 X 118817026 118839173 CNV Gain Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463343 S 9 1 0 Samples from several populations that are part of the HapMap project. "" NA19240 nsv7058 X 118830749 118834397 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv905 S 9 1 0 "" NA19240 nsv7059 X 118836401 118854351 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv906 S 9 1 0 "" NA19240 nsv425243 X 118842932 118850275 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv443821 M 24 "" nsv7457 X 118922681 119135309 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10729,nssv3824,nssv10732,nssv10731,nssv10730,nssv5257,nssv5256 M 9 0 0 "" NA12878,NA18956,NA19129 nsv526653 X 118945513 119056516 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702981 S 2026 1 0 "" nsv9970 X 118992641 118993572 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27469 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA12155 nsv9971 X 119074364 119075295 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27477 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA12155 dgv2470e1 X 119183307 119364831 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv12636,esv496 M 271 0 0 "" NA18500 nsv528786 X 119296574 119387496 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705454 S 2026 1 0 "" nsv521465 X 119715220 119740221 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698076 S 2026 1 0 "" nsv7060 X 119763543 119794269 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10733 S 9 1 0 "" NA18956 nsv7061 X 119784412 119855430 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1861,nssv907,nssv6368,nssv9782,nssv10734,nssv5258,nssv9252,nssv11225 M 9 0 8 "" NA12156,NA15510,NA18507,NA18517,NA18555,NA18956,NA19129,NA19240 nsv9972 X 119787006 119854986 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27485,nssv23581,nssv27589,nssv26640,nssv26627,nssv26003,nssv26351,nssv27597 M 31 2 4 Samples from several populations that are part of the HapMap project. "" NA12155,NA18504,NA18572,NA18853,NA19007,NA19173 nsv214 X 119789968 119818984 CNV Loss Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv214 S 1 0 1 "" NA15510 nsv510856 X 119808468 119842512 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618883,nssv622647,nssv617451,nssv620041 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv524166 X 119953037 119971069 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700045 S 2026 1 0 "" nsv425247 X 119977564 119984419 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv443825 M 24 "" nsv517214 X 120086985 120102774 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv660607,nssv693655,nssv671250,nssv668967,nssv685679,nssv659625,nssv669028,nssv675657,nssv654028 M 2026 9 0 "" nsv438154 X 120130742 120136305 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470220 S 269 0 1 Samples from several populations that are part of the HapMap project. "" NA18637 dgv528n21 X 120255522 120377994 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv523353,nsv520087 M 2026 2 0 "" nsv522118 X 120267460 120426397 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694133 S 2026 0 1 "" nsv520918 X 120425717 120594246 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694407 S 2026 0 1 "" dgv529n21 X 120442936 120679653 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv525038,nsv520535 M 2026 4 0 "" nsv526303 X 120452042 120814126 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702585 S 2026 1 0 "" nsv519144 X 120679653 120730570 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696622 S 2026 0 1 "" nsv7062 X 120736538 120768711 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6369 S 9 1 0 "" NA12156 nsv526894 X 120775698 120814126 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703252 S 2026 1 0 "" nsv525381 X 120814126 120876074 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701503 S 2026 1 0 "" nsv7063 X 120845973 120863860 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8771 S 9 0 1 "" NA12156 nsv510857 X 120919780 120961770 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618884 S 4 0 1 "" NA10860 nsv527746 X 120948170 121039184 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704232 S 2026 1 0 "" nsv522211 X 120963024 121050418 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694987 S 2026 0 1 "" nsv510554 X 121015795 121021795 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618485 S 4 0 1 "" CHM nsv7064 X 121124737 121150761 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8772 S 9 0 1 "" NA12156 nsv518818 X 121252912 121264365 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696271 S 2026 1 0 "" nsv528061 X 121718448 121721252 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704596 S 2026 1 0 "" nsv7066 X 121757004 121801405 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1865 S 9 0 1 "" NA18555 nsv522298 X 121934063 121976531 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695079 S 2026 1 0 "" nsv508796 X 121972655 122003247 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619601,nssv618150,nssv620957,nssv623602 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv508797 X 122212360 122260170 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623603 S 4 1 0 "" NA18994 nsv7067 X 122235344 122268784 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8773 S 9 1 0 "" NA12156 nsv508798 X 122378516 122406423 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623604 S 4 1 0 "" NA18994 nsv7068 X 122410830 122456503 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6370 S 9 0 1 "" NA12156 nsv7069 X 122438003 122473169 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv908 S 9 1 0 "" NA19240 nsv517283 X 122661487 122692863 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv665946,nssv654200,nssv692792 M 2026 3 0 "" dgv2471e1 X 122690351 122888100 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv5469,esv285 M 271 0 0 "" NA18632 nsv507991 X 122727740 122733740 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621973,nssv617984 M 4 2 0 "" CHM,NA10860 nsv438155 X 122831326 122832032 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470222,nssv470221 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA18540,NA18995 nsv425500 X 123037098 123037098 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv444078 M 24 "" nsv7070 X 123117887 123162591 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8774 S 9 0 1 "" NA12156 nsv523165 X 123326418 123371877 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698877 S 2026 1 0 "" nsv7071 X 123343305 123374496 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3825 S 9 1 0 "" NA12878 nsv7072 X 123497238 123498568 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8775 S 9 1 0 "" NA12156 nsv524603 X 123745251 123842547 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700564 S 2026 1 0 "" dgv271n6 X 123841243 123841686 CNV Loss Mills et al 2006 16902084 Sequence_alignment nsv425308,nsv425386 M 24 "" nsv7073 X 124004691 124013198 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8776 S 9 0 1 "" NA12156 nsv7074 X 124059249 124104406 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8777 S 9 0 1 "" NA12156 esv2752314 X 124179112 124667821 CNV Loss Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6989942,essv6984320 M 771 0 1 "" BEC_688 nsv520238 X 124222524 124330266 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697301 S 2026 1 0 "" nsv507992 X 124305966 124311966 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621974,nssv617985,nssv620485,nssv623096 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv510555 X 124395013 124401013 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622206,nssv624104 M 4 0 2 "" NA10860,NA18994 nsv510556 X 124464885 124470885 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624105,nssv622207 M 4 0 2 "" NA10860,NA18994 nsv517568 X 124467889 124807026 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv682832,nssv652388,nssv670844,nssv686048 M 2026 4 0 "" nsv507993 X 124613286 124619286 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617986,nssv620486 M 4 2 0 "" CHM,NA15510 nsv516225 X 124830452 125012608 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv666936,nssv672998,nssv667415,nssv676973,nssv661921,nssv675247,nssv659214,nssv689054,nssv679485,nssv662037 M 2026 0 10 "" nsv7075 X 124844038 124874210 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1866 S 9 1 0 "" NA18555 nsv524503 X 124904248 125176356 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700447 S 2026 1 0 "" nsv510557 X 124910722 124916722 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624106,nssv622209 M 4 0 2 "" NA10860,NA18994 nsv519795 X 124983685 125110872 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697056 S 2026 1 0 "" nsv523656 X 125037640 125110872 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699457 S 2026 1 0 "" nsv520617 X 125065973 125084481 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv673272,nssv691200 M 2026 2 0 "" dgv2472e1 X 125340415 125399344 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv9174,esv156 M 271 0 0 "" NA19128 nsv7078 X 125396740 125429288 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10735 S 9 1 0 "" NA18956 nsv7079 X 125508217 125540376 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6371 S 9 1 0 "" NA12156 nsv507994 X 125515124 125521124 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617987 S 4 1 0 "" CHM nsv425363 X 125575886 125578426 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv443941 M 24 "" nsv527777 X 125612239 125641020 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704268 S 2026 0 1 "" nsv519509 X 125619096 126099156 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv683848,nssv659121,nssv682124,nssv661583,nssv690334,nssv703689,nssv704399,nssv692288,nssv682123,nssv678627,nssv656454,nssv683849 M 2026 8 4 "" nsv518671 X 125838304 126288621 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696121 S 2026 1 0 "" nsv7080 X 125852447 125883311 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10736 S 9 1 0 "" NA18956 nsv7081 X 126316751 126346960 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3826 S 9 0 1 "" NA12878 dgv530n21 X 126341449 126424239 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv524356,nsv527964 M 2026 0 2 "" nsv7082 X 126408712 126441122 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10737 S 9 1 0 "" NA18956 nsv525246 X 126463262 126484754 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701337 S 2026 0 1 "" nsv507995 X 126464408 126470408 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620487 S 4 1 0 "" NA15510 nsv515791 X 126499710 126612039 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv680927,nssv664800,nssv676952 M 2026 0 3 "" nsv510558 X 126573735 126579735 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621375 S 4 0 1 "" NA15510 nsv518527 X 126596522 126744554 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695970 S 2026 1 0 "" dgv2473e1 X 126868603 127019222 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv7807,esv430 M 271 0 0 "" NA18558 nsv7083 X 126936474 126968776 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6372 S 9 1 0 "" NA12156 nsv527511 X 126948591 127221065 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703965 S 2026 1 0 "" esv33179 X 126998854 127016776 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99876 S 51 0 1 "" 22086 nsv518257 X 127090783 127221065 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695687 S 2026 1 0 "" nsv7084 X 127110198 127154482 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1867 S 9 0 1 "" NA18555 nsv517586 X 127129265 127225025 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv663271,nssv705300,nssv652444,nssv663824 M 2026 3 1 "" nsv518348 X 127129265 127391937 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695776 S 2026 0 1 "" nsv521085 X 127254433 127391937 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697779 S 2026 0 1 "" nsv508799 X 127312415 127335300 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623606,nssv620958,nssv619602 M 4 3 0 "" NA10860,NA15510,NA18994 nsv425524 X 127470626 127470626 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv444102 M 24 "" nsv517752 X 127540073 127659205 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv656082,nssv692727,nssv689191,nssv668089,nssv666536,nssv653104,nssv686825,nssv698389,nssv654979,nssv673233,nssv690518,nssv673462,nssv659152,nssv691345 M 2026 13 1 "" nsv424960 X 127709653 127718148 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv443538 M 24 "" nsv525859 X 127787902 127915915 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702055 S 2026 1 0 "" nsv507996 X 127991086 127997086 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621975 S 4 1 0 "" NA10860 nsv525860 X 128005047 128358925 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702056 S 2026 1 0 "" nsv425549 X 128013572 128013572 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv444127 M 24 "" esv33431 X 128046890 128052741 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101477 S 51 0 1 "" 21603 nsv7085 X 128135993 128169064 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8779 S 9 1 0 "" NA12156 nsv510858 X 128218598 128273004 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622649 S 4 0 1 "" NA18994 nsv523064 X 128310395 128383877 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698750 S 2026 1 0 "" dgv2474e1 X 128423110 128467003 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv11087,essv17467,essv10474,essv1241,essv24311,essv3154,essv4267,essv13731,essv20258,essv4868,essv21714,essv8782,essv3215,essv11788,essv4736,essv16949,essv20890,essv19997,essv19785,essv13885,essv13001,essv23877,essv17196,essv18328,essv19535,essv20371,essv16265,essv12522,essv16867,essv19010,essv8622,essv13537,essv16024,essv1424,essv356 M 271 0 0 "" NA07048,NA10830,NA10835,NA10856,NA11994,NA12005,NA12043,NA12144,NA12248,NA12801,NA12814,NA12864,NA18501,NA18504,NA18515,NA18561,NA18603,NA18620,NA18854,NA18859,NA18944,NA18971,NA18974,NA18995,NA19012,NA19092,NA19119,NA19144,NA19160,NA19161,NA19171,NA19205,NA19207,NA19211,NA19239 dgv2475e1 X 128423110 128689620 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv13433,esv83,essv9409 M 271 0 0 "" NA19192,NA19208 nsv7086 X 128426819 128460910 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2839 S 9 1 0 "" NA18555 nsv508800 X 128446030 128521990 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619603 S 4 1 0 "" NA10860 nsv528290 X 128495194 129289361 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704864 S 2026 1 0 "" nsv526197 X 128531947 128685765 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702459 S 2026 1 0 "" nsv424981 X 128623635 128623695 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv443559 M 24 "" nsv818036 X 128633331 128641132 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417767 S 112 0 1 "" NA19003 nsv7087 X 128674548 128719955 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6373 S 9 0 1 "" NA12156 nsv7089 X 128741381 128765056 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6374 S 9 1 0 "" NA12156 nsv7090 X 128908396 128953269 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8780 S 9 0 1 "" NA12156 nsv510559 X 129200484 129206484 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624107 S 4 0 1 "" NA18994 nsv527144 X 129603660 129899008 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703533 S 2026 1 0 "" nsv523130 X 129797018 129921863 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698833 S 2026 1 0 "" nsv517789 X 129960235 130066158 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694597,nssv682565,nssv653271 M 2026 3 0 "" nsv508802 X 129994383 130002609 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619604,nssv620959,nssv618151,nssv623607 M 4 4 0 "" CHM,NA10860,NA15510,NA18994 nsv528179 X 130026152 130406465 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704729 S 2026 1 0 "" nsv522699 X 130129889 130148157 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv706110 S 2026 1 0 "" nsv520550 X 130153524 130215252 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv687736,nssv672464,nssv701310,nssv686887 M 2026 4 0 "" nsv7091 X 130355238 130358696 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1868 S 9 1 0 "" NA18555 nsv424928 X 130379528 130381457 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv443506 M 24 "" nsv520989 X 130619492 130693826 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697724 S 2026 1 0 "" nsv510859 X 130707384 130754277 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618885 S 4 0 1 "" NA10860 nsv7092 X 130816825 130848171 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8781 S 9 0 1 "" NA12156 nsv425419 X 130904329 130904424 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv443997 M 24 "" nsv510860 X 131178997 131211504 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618886 S 4 0 1 "" NA10860 nsv7093 X 131468893 131495763 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8782 S 9 1 0 "" NA12156 nsv7094 X 131633137 131666491 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv909 S 9 1 0 "" NA19240 nsv7095 X 131754562 131785898 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv911 S 9 1 0 "" NA19240 esv33324 X 131811444 131811826 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99995 S 51 0 1 "" 22086 nsv7096 X 131813829 131847621 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv912 S 9 1 0 "" NA19240 nsv7097 X 131936809 131981445 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8783 S 9 0 1 "" NA12156 nsv7098 X 132124473 132157897 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8784 S 9 1 0 "" NA12156 nsv7100 X 132188724 132223232 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2840 S 9 1 0 "" NA18555 nsv510560 X 132300209 132306209 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621376,nssv618486,nssv624108,nssv622210 M 4 0 4 "" CHM,NA10860,NA15510,NA18994 nsv510861 X 133122666 133193185 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618887 S 4 0 1 "" NA10860 nsv7101 X 133181502 133226444 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8785 S 9 0 1 "" NA12156 nsv521188 X 133247002 133248244 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv684219,nssv689013 M 2026 0 2 "" nsv517076 X 133406938 133435656 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv669029,nssv665962,nssv653739,nssv669292,nssv651840,nssv674671,nssv657063,nssv652127 M 2026 8 0 "" nsv521470 X 133406938 133469038 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698080 S 2026 1 0 "" nsv525660 X 133439292 133463864 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701816 S 2026 1 0 "" nsv521365 X 133446048 133448134 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697975 S 2026 1 0 "" nsv7102 X 133505638 133517943 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5259 S 9 1 0 "" NA19129 nsv507997 X 133743910 133749910 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623097 S 4 1 0 "" NA18994 nsv7103 X 133920479 133930988 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1869 S 9 0 1 "" NA18555 dgv2476e1 X 133926407 134223835 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv301,essv7690 M 271 0 0 "" NA18633 nsv469825 X 133971783 134124124 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649846 M 265 4 2 Samples from several populations that are part of the HapMap project. "" nsv7458 X 134004695 134128734 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6376,nssv6377,nssv913,nssv914,nssv5260 M 9 0 0 "" NA12156,NA19129,NA19240 nsv7104 X 134115516 134160979 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6378 S 9 0 1 "" NA12156 nsv469871 X 134146982 134323832 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649892 M 265 0 2 Samples from several populations that are part of the HapMap project. "" nsv528014 X 134218804 134327144 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704542 S 2026 1 0 "" nsv522205 X 134234054 134393271 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694979 S 2026 1 0 "" nsv518380 X 134249357 134322825 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695811 S 2026 1 0 "" nsv9973 X 134290012 134298394 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25816,nssv25188 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048 nsv818037 X 134317250 134331944 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417764 S 112 1 0 "" NA18978 dgv2477e1 X 134328057 134703510 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv22658,essv6375,essv8306 M 271 0 0 "" NA12752,NA18572,NA19103 esv785 X 134328057 134880261 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent + Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP + 250K_Nsp_SNP) "" S 271 "" dgv531n21 X 134393271 134551086 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv523594,nsv519163 M 2026 2 0 "" nsv518577 X 134447820 134563478 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694250 S 2026 1 0 "" dgv2478e1 X 134466048 134532759 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv21642,essv20730 M 271 0 0 "" NA12752,NA12761 dgv2479e1 X 134466048 134673554 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv8044,essv12947,essv8684 M 271 0 0 "" NA18912,NA19102,NA19103 nsv9974 X 134472803 134481309 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27493 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA12155 nsv517224 X 134504954 134635914 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv683393,nssv654065,nssv686590,nssv689934,nssv697774,nssv673745,nssv672754,nssv661735,nssv666491,nssv680498,nssv656720,nssv668225,nssv682872 M 2026 12 1 "" nsv527747 X 134504954 134719525 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704233 S 2026 1 0 "" nsv7459 X 134516036 134530233 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10738 S 9 0 0 "" NA18956 nsv9975 X 134526377 134533839 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27605 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18504 nsv7105 X 134559944 134631535 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv11226,nssv9253,nssv1870 M 9 0 3 "" NA15510,NA18517,NA18555 nsv7460 X 134562664 134721748 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5261,nssv6380,nssv915,nssv1871,nssv6379,nssv5262 M 9 0 0 "" NA12156,NA18555,NA19129,NA19240 nsv9976 X 134569294 134699243 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28262,nssv26976,nssv26043,nssv26023,nssv27651,nssv26986,nssv26439,nssv23609,nssv23291,nssv25238,nssv25213,nssv26409,nssv27531,nssv25263,nssv27539,nssv23637,nssv27643,nssv26424,nssv28230 M 31 8 1 Samples from several populations that are part of the HapMap project. "" NA07029,NA12155,NA12872,NA18504,NA18563,NA18572,NA18853,NA18860,NA19144 nsv215 X 134576408 134631535 CNV Loss Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv215 S 1 0 1 "" NA15510 nsv7106 X 134583409 134589227 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10740,nssv10739 M 9 1 0 "" NA18956 dgv2480e1 X 134587595 134703510 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv13751,essv20434,essv22142,essv13552,essv12517,essv12253,essv22876,essv13719,essv12837,essv23487,essv9227,essv7851,essv22039,essv24908,essv22946,essv16647,essv16918,essv3222,essv12288,essv11696,essv20882,essv4669,essv9321,essv13860,essv12965,essv8928,essv17171,essv16774,essv12738,essv15834,essv18951,essv16008,essv3524,essv11750,essv3985,essv401 M 271 0 0 "" NA06994,NA07034,NA07357,NA10830,NA10857,NA12005,NA12154,NA12760,NA12801,NA18501,NA18504,NA18558,NA18622,NA18853,NA18854,NA18859,NA18872,NA18914,NA18965,NA18970,NA18971,NA18974,NA19101,NA19119,NA19120,NA19128,NA19138,NA19142,NA19144,NA19153,NA19154,NA19160,NA19171,NA19200,NA19207,NA19223 essv24688 X 134587595 134880261 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA11829 nsv469568 X 134592978 134752950 CNV Gain Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649680 M 265 86 0 Samples from several populations that are part of the HapMap project. "" nsv471605 X 134592979 134752950 CNV Gain+Loss Sharp et al 2005 15918152 BAC_aCGH,FISH Eichler Segmental Duplication BAC array nssv549352,nssv549364,nssv549372,nssv549369,nssv549353,nssv549384,nssv549359,nssv549363,nssv549376,nssv549370,nssv549368,nssv549362,nssv549377,nssv549374,nssv549355,nssv549371,nssv549380,nssv549378,nssv549381,nssv549360,nssv549382,nssv549367,nssv549375,nssv549356,nssv549358,nssv549357,nssv549350,nssv549351,nssv549366,nssv549383,nssv549361,nssv549379,nssv549354,nssv549365,nssv549373 M 48 25 10 "" JK1051,JK1061,JK776,NA10470,NA10471,NA10472,NA10473,NA10493,NA10496,NA10967,NA10969,NA10970,NA10971,NA10976,NA10979,NA11323,NA11521,NA11523,NA15724,NA15725,NA15726,NA15727,NA15729,NA15730,NA15731,NA15732,NA15733,NA16688,NA17014,NA17016,NA17017,NA17051,NA17052,NA17058,NA17059 nsv7107 X 134659483 134731661 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9254,nssv916 M 9 0 2 "" NA18517,NA19240 nsv527358 X 134716598 134772338 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703788 S 2026 1 0 "" nsv9977 X 134738264 134762390 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26062,nssv26453,nssv27659,nssv23665,nssv27547,nssv28264,nssv26996,nssv25288 M 31 7 1 Samples from several populations that are part of the HapMap project. "" NA07029,NA12155,NA18504,NA18563,NA18572,NA18853,NA18860,NA19144 nsv7108 X 134962600 134993691 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8787 S 9 0 1 "" NA12156 nsv425281 X 135407481 135415943 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv443859 M 24 "" nsv7109 X 135494338 135528273 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8788 S 9 1 0 "" NA12156 nsv7111 X 135846384 135891970 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6381 S 9 0 1 "" NA12156 nsv522722 X 135902795 135975227 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698353 S 2026 1 0 "" nsv510561 X 136157449 136163449 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622211 S 4 0 1 "" NA10860 nsv523370 X 136213213 136257361 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699119 S 2026 0 1 "" nsv510862 X 136229869 136310104 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618888 S 4 0 1 "" NA10860 nsv522544 X 136285419 136498438 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705924 S 2026 1 0 "" nsv7112 X 136336652 136371272 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv2841 S 9 1 0 "" NA18555 nsv510562 X 136526173 136532173 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618487,nssv621377 M 4 0 2 "" CHM,NA15510 esv33453 X 136685979 136686284 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101560,essv94666,essv95438,essv97413,essv101689,essv99099,essv92835,essv92719,essv98071 M 51 0 9 "" 21603,21791,21847,21879,21909,21938,21939,21944,22259 esv32806 X 136708999 137184392 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv94850,essv99254 M 51 0 2 "" 22231,22275 nsv508803 X 136736824 136736824 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618152 S 4 1 0 "" CHM nsv507998 X 136740609 136746609 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv621976,nssv620488 M 4 2 0 "" NA10860,NA15510 nsv524161 X 137159538 137256139 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700040 S 2026 1 0 "" nsv7113 X 137167266 137198012 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8789 S 9 0 1 "" NA12156 nsv527395 X 137193984 137211685 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703830 S 2026 1 0 "" nsv525867 X 137306503 138165363 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702066 S 2026 1 0 "" nsv7114 X 137330959 137362607 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8790 S 9 0 1 "" NA12156 nsv510563 X 137576079 137582079 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624109 S 4 0 1 "" NA18994 nsv524567 X 137678097 137802460 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700522 S 2026 1 0 "" nsv7115 X 137718449 137751971 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8791 S 9 1 0 "" NA12156 nsv523403 X 137832621 137849180 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699154 S 2026 1 0 "" nsv524240 X 138241304 138287888 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700130 S 2026 1 0 "" nsv521021 X 138367913 138374046 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv685013,nssv688511,nssv679989 M 2026 3 0 "" nsv528242 X 138367913 138398215 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704804 S 2026 1 0 "" nsv523170 X 138468787 138475983 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698882 S 2026 1 0 "" nsv7116 X 138541240 138576625 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8793 S 9 0 1 "" NA12156 nsv7117 X 138674377 138708070 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv917 S 9 1 0 "" NA19240 nsv7461 X 138786674 139024020 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6382 S 9 0 0 "" NA12156 nsv7118 X 138827832 138863075 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv918 S 9 1 0 "" NA19240 nsv7119 X 139159527 139188285 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv919 S 9 1 0 "" NA19240 nsv7120 X 139218002 139234321 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv920 S 9 0 1 "" NA19240 nsv442816 X 139221930 139226714 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" esv33042 X 139343062 139400605 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv100728 S 51 0 1 "" 21656 dgv532n21 X 139378787 139473032 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv522896,nsv526562 M 2026 2 0 "" nsv523793 X 139380002 139382438 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699621 S 2026 1 0 "" nsv523487 X 139380002 139429292 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699254 S 2026 1 0 "" nsv7122 X 139411093 139455896 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8794 S 9 0 1 "" NA12156 nsv508804 X 139495442 139541054 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619606,nssv623608,nssv620960 M 4 3 0 "" NA10860,NA15510,NA18994 nsv523880 X 139542286 139563438 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699722 S 2026 1 0 "" nsv522346 X 139592712 139602340 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695126 S 2026 1 0 "" nsv519898 X 139612270 139612611 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv691549,nssv672294,nssv659377,nssv677369 M 2026 4 0 "" dgv533n21 X 139612270 139652287 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv527132,nsv517824 M 2026 2 0 "" nsv527249 X 139612611 139664120 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703651 S 2026 1 0 "" nsv521167 X 139654735 139655158 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv683700,nssv693590 M 2026 2 0 "" nsv526418 X 139654735 139656938 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702719 S 2026 0 1 "" nsv523758 X 139664120 139788815 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699578 S 2026 1 0 "" dgv2481e1 X 139711783 139870206 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv9402,essv16080,essv10862,essv18725,essv4281,essv2325,essv16972,essv9392,essv11556,essv13924,essv17320,essv11457,essv21813,essv23944,essv9139,essv9770,essv19572,essv9649,essv17972,essv17738,essv12456,essv18933,essv16501,essv17451,essv2281 M 271 0 0 "" NA11839,NA12003,NA12005,NA12043,NA12814,NA12864,NA12872,NA12874,NA18501,NA18603,NA18853,NA18854,NA18856,NA18857,NA18860,NA18863,NA18871,NA18913,NA18940,NA18966,NA19144,NA19173,NA19207,NA19208,NA19210 dgv2482e1 X 139711783 140193494 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv16719,essv24739,essv17519,essv21663,essv12224,essv9256,essv11109,essv23985,essv9595,essv14274,essv11659,essv12832,essv8927,essv23023,essv17112,essv16817,essv18285,essv13513,essv16215 M 271 0 0 "" NA10846,NA11829,NA12248,NA12716,NA12762,NA12812,NA18872,NA19101,NA19120,NA19128,NA19141,NA19142,NA19154,NA19160,NA19161,NA19171,NA19194,NA19200,NA19211 dgv2483e1 X 139711783 140559532 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv10132,esv519,essv8310 M 271 0 0 "" NA19103,NA19130 nsv818038 X 139766120 139788815 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417758 S 112 1 0 "" NA18949 nsv433463 X 139766120 139876110 CNV Gain Cooper et al 2008 18776910 SNP_array Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C) nssv463344 S 9 1 0 Samples from several populations that are part of the HapMap project. "" NA18555 nsv524931 X 139766120 139950000 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700944 S 2026 1 0 "" dgv2484e1 X 139767019 139785882 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv5867,essv930 M 271 0 0 "" NA18555,NA18949 nsv7462 X 139771949 140449014 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5264,nssv1874,nssv1872 M 9 0 0 "" NA18555,NA19129 nsv511087 X 139786066 139845471 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618688 S 4 0 0 "" CHM nsv508805 X 139799066 139845471 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620961 S 4 1 0 "" NA15510 nsv510863 X 139799066 139845471 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618889,nssv622650 M 4 0 2 "" NA10860,NA18994 nsv7123 X 139799072 139845329 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10741,nssv1873 M 9 0 2 "" NA18555,NA18956 nsv9978 X 139802399 139842509 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26081,nssv25837,nssv23319,nssv25858,nssv27006,nssv25338,nssv26653,nssv27667,nssv23723,nssv27675,nssv28266,nssv25313 M 31 9 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA12872,NA18504,NA18572,NA18853,NA18860,NA19144,NA19173 nsv7124 X 139803623 139821600 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5263,nssv921 M 9 2 0 "" NA19129,NA19240 nsv516880 X 139956661 140484847 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv660263,nssv692087,nssv698171,nssv692289,nssv661972,nssv654767,nssv654656,nssv675436,nssv655078,nssv660048,nssv697891,nssv702675,nssv694219,nssv655139,nssv679606,nssv689192,nssv701338,nssv701659,nssv661184,nssv672692,nssv694456,nssv677046 M 2026 21 1 "" dgv2485e1 X 140036126 140469418 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv12949,essv8056 M 271 0 0 "" NA19102,NA19103 nsv9980 X 140042826 140073311 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28268,nssv25363,nssv23347,nssv25879,nssv26666,nssv27046,nssv26100,nssv27683 M 31 8 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA12872,NA18504,NA18853,NA18860,NA19144,NA19173 dgv269e55 X 140078981 140280724 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv34465,esv34466 M 771 2 0 "" NA19102,NA19103 esv2752315 X 140078981 140478202 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6983251,essv6986383 M 771 1 0 "" BEC_559 nsv425426 X 140130978 140131036 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv444004 M 24 "" nsv508806 X 140233797 140241253 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623609 S 4 1 0 "" NA18994 nsv9981 X 140243934 140245497 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26367,nssv26467,nssv25388 M 31 0 3 Samples from several populations that are part of the HapMap project. "" NA07029,NA18563,NA19007 nsv9982 X 140257239 140269639 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26412 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA19007 dgv2486e1 X 140319722 140501009 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv21710,essv23996,essv16645,essv9201,essv18296,essv8924,essv12263,essv11158,essv24703,essv16296,essv17548 M 271 0 0 "" NA10846,NA11829,NA12248,NA12716,NA12762,NA19101,NA19128,NA19142,NA19161,NA19200,NA19211 essv9625 X 140368147 140559532 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA19141 nsv471606 X 140371603 140540129 CNV Gain Sharp et al 2005 15918152 BAC_aCGH,FISH Eichler Segmental Duplication BAC array nssv549474,nssv549492,nssv549485,nssv549476,nssv549473,nssv549488,nssv549499,nssv549478,nssv549498,nssv549489,nssv549483,nssv549479,nssv549495,nssv549475,nssv549486,nssv549497,nssv549480,nssv549490,nssv549493,nssv549487,nssv549482,nssv549500,nssv549477,nssv549481,nssv549496,nssv549484,nssv549494,nssv549491 M 48 28 0 "" JK1061,NA10469,NA10470,NA10471,NA10472,NA10473,NA10493,NA10494,NA10496,NA10967,NA10979,NA11323,NA11521,NA11523,NA15727,NA15729,NA15730,NA15731,NA15732,NA15733,NA16688,NA17015,NA17017,NA17051,NA17052,NA17058,NA17059,P86GA nsv469528 X 140374062 140474317 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649631 M 265 0 5 Samples from several populations that are part of the HapMap project. "" nsv9983 X 140378162 140419673 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23405,nssv25900,nssv23777,nssv25921,nssv25413,nssv28270,nssv26119,nssv27056,nssv26679,nssv23750,nssv27691 M 31 9 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA12872,NA18504,NA18572,NA18853,NA18860,NA19144,NA19173 nsv9984 X 140492162 140514784 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26691,nssv26138,nssv28272,nssv27699,nssv25972,nssv25468,nssv23433,nssv23804,nssv27066 M 31 9 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA12872,NA18504,NA18572,NA18853,NA18860,NA19144,NA19173 nsv425116 X 140603402 140603402 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv443694 M 24 "" nsv522089 X 140654053 140690269 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694861 S 2026 1 0 "" nsv9985 X 140718574 140721359 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27706,nssv26427,nssv27555 M 31 3 0 Samples from several populations that are part of the HapMap project. "" NA12155,NA18504,NA19007 nsv526895 X 140748882 140793436 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703253 S 2026 1 0 "" nsv524726 X 140758871 140859000 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700714 S 2026 1 0 "" nsv520124 X 140793436 140838268 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv661816,nssv661006,nssv674946 M 2026 0 3 "" nsv523371 X 140831462 140930683 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699120 S 2026 1 0 "" nsv528591 X 140837310 140862039 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705216 S 2026 1 0 "" nsv520368 X 140849467 140859000 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694378 S 2026 1 0 "" nsv507999 X 140912062 140918062 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620489 S 4 1 0 "" NA15510 nsv524561 X 140919711 140929261 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700515 S 2026 1 0 "" nsv523711 X 140920970 140944268 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699523 S 2026 1 0 "" dgv534n21 X 141065988 141095632 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv524521,nsv521559 M 2026 2 0 "" nsv9986 X 141192204 141198785 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26481 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18563 nsv7125 X 141194638 141213393 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1875 S 9 0 1 "" NA18555 nsv526479 X 141194967 141285696 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702787 S 2026 1 0 "" nsv818040 X 141196865 141198815 CNV Loss Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417753 S 112 0 1 "" NA18547 nsv438156 X 141197126 141198815 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470223,nssv470224 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA18562,NA18563 dgv535n21 X 141319501 141323639 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv525614,nsv522478 M 2026 2 0 "" nsv7126 X 141349352 141374234 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10742 S 9 1 0 "" NA18956 nsv528836 X 141498269 141665596 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705512 S 2026 1 0 "" nsv510564 X 141543433 141549433 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624110 S 4 0 1 "" NA18994 nsv7127 X 141581195 141614983 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8795 S 9 1 0 "" NA12156 dgv2487e1 X 141595220 141794235 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1372,essv6709,essv4714,essv20802,essv22663,essv1230,essv1016,essv3964,essv23839,essv17513,essv11083,essv5401,essv24796,essv18724,essv6612,essv7722,essv20265,essv5448,essv5290,esv235,essv17669,essv13467,essv19637,essv896,essv23904,essv23232,essv17146,essv12757,essv1443,essv211,essv18947,essv475,essv3742,essv17234,essv3516,essv2272,essv12597,essv2654,essv15810 M 271 0 0 "" NA07022,NA07029,NA10860,NA11881,NA12005,NA12144,NA12146,NA12155,NA12752,NA12762,NA12814,NA12874,NA18503,NA18563,NA18608,NA18621,NA18622,NA18624,NA18632,NA18633,NA18914,NA18944,NA18948,NA18952,NA18961,NA18965,NA18966,NA18967,NA18970,NA18995,NA19000,NA19005,NA19007,NA19098,NA19171,NA19192,NA19211,NA19223 nsv520228 X 141609115 141677717 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697294 S 2026 1 0 "" nsv521083 X 141795772 141797198 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697778 S 2026 1 0 "" nsv525518 X 141795772 141816042 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701651 S 2026 1 0 "" nsv523426 X 141855255 141874008 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699181 S 2026 1 0 "" nsv7128 X 141978128 142009312 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10743 S 9 1 0 "" NA18956 nsv524522 X 142145577 142216046 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700470 S 2026 1 0 "" nsv527250 X 142216046 142231934 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703652 S 2026 0 1 "" nsv7129 X 142274899 142344107 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8796,nssv922 M 9 0 2 "" NA12156,NA19240 esv33177 X 142346358 142371537 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98080,essv99347,essv98506 M 51 0 3 "" 22259,22275,22352 nsv7130 X 142387060 142418475 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv923 S 9 1 0 "" NA19240 nsv523133 X 142398674 142417783 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698838 S 2026 1 0 "" nsv526800 X 142589015 142679659 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703154 S 2026 1 0 "" nsv523256 X 142594312 142735813 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698985 S 2026 1 0 "" nsv521222 X 142630313 142654127 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv686014,nssv689992 M 2026 2 0 "" nsv508807 X 142836259 142884811 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623610 S 4 1 0 "" NA18994 esv32987 X 142881561 142882725 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99324 S 51 0 1 "" 22275 esv33873 X 143026882 143027364 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99792 S 51 0 1 "" 22086 nsv7131 X 143108868 143140127 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1876 S 9 0 1 "" NA18555 nsv517977 X 143200682 143218732 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695389 S 2026 1 0 "" nsv7133 X 143352181 143411322 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv924,nssv8797 M 9 2 0 "" NA12156,NA19240 nsv516515 X 143413214 143527333 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698986,nssv673938,nssv695473,nssv668782,nssv688899,nssv685703,nssv685410,nssv672024,nssv688301,nssv691148,nssv672973,nssv680331,nssv682507 M 2026 13 0 "" nsv523671 X 143457979 143569851 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699473 S 2026 1 0 "" nsv425181 X 143548840 143549146 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv443759 M 24 "" nsv7134 X 143732552 143777992 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6383 S 9 0 1 "" NA12156 nsv522555 X 143845468 143856367 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705936 S 2026 1 0 "" nsv519882 X 143851866 143929236 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697103 S 2026 1 0 "" nsv528629 X 143990531 144028183 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705259 S 2026 1 0 "" nsv522897 X 144007518 144060085 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698555 S 2026 1 0 "" dgv536n21 X 144008699 144024723 CNV Gain Shaikh et al 2009 19592680 SNP_array nsv521264,nsv524712 M 2026 3 0 "" dgv537n21 X 144037226 144171065 CNV Loss Shaikh et al 2009 19592680 SNP_array nsv527680,nsv518796 M 2026 0 2 "" nsv523140 X 144060085 144091274 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698847 S 2026 1 0 "" nsv425301 X 144125137 144125137 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv443879 M 24 "" nsv425550 X 144148765 144148765 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv444128 M 24 "" nsv527757 X 144168023 144273793 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704244 S 2026 1 0 "" nsv7135 X 144511717 144545304 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8798 S 9 1 0 "" NA12156 nsv520221 X 144538072 144564433 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv679348,nssv661973 M 2026 2 0 "" nsv524350 X 144545981 144584659 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700258 S 2026 1 0 "" nsv524002 X 144620781 144651628 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699862 S 2026 1 0 "" nsv524594 X 144679983 144701439 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700554 S 2026 1 0 "" nsv526619 X 144679983 144719630 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702939 S 2026 1 0 "" nsv521836 X 144924711 145052081 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694609 S 2026 1 0 "" nsv425046 X 145048575 145048660 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv443624 M 24 "" nsv517790 X 145155424 145245674 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv685704,nssv705837,nssv688829,nssv653272 M 2026 4 0 "" nsv510565 X 145269934 145275934 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618488 S 4 0 1 "" CHM nsv527981 X 145292515 145356265 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704499 S 2026 1 0 "" nsv523224 X 145356265 145373337 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698946 S 2026 1 0 "" nsv7136 X 145532170 145565663 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8799 S 9 1 0 "" NA12156 nsv7137 X 145753240 145784271 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv11227 S 9 1 0 "" NA15510 nsv517085 X 145806586 145837820 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv653586,nssv681518,nssv681387 M 2026 3 0 "" nsv527310 X 145826664 145851050 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703732 S 2026 1 0 "" dgv2488e1 X 145829455 146494249 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1574,esv1153 M 271 0 0 "" NA18997 nsv516075 X 145844797 145851050 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv690845,nssv662395,nssv673959,nssv685014,nssv679990,nssv689881,nssv666198,nssv671619,nssv666040,nssv675753 M 2026 10 0 "" nsv527520 X 145844797 145862777 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703974 S 2026 1 0 "" esv35128 X 145854225 146439708 CNV Gain Pinto_et_al_2007 17911159 SNP_array Affymetrix Mapping 250K Nsp SNP Array + Affymetrix Mapping 250K Sty2 SNP Array essv6978290,essv6978291,essv6986585 M 771 1 0 "" NA18997 nsv9987 X 145885185 145891616 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23461 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA12872 nsv438157 X 145885655 145888187 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470225 S 269 0 1 Samples from several populations that are part of the HapMap project. "" NA12872 nsv522829 X 146015860 146034377 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698479 S 2026 1 0 "" nsv521982 X 146015860 146167218 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694749 S 2026 1 0 "" nsv508808 X 146021707 146078628 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620962,nssv618153 M 4 2 0 "" CHM,NA15510 nsv7138 X 146049919 146089646 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv11228,nssv5265,nssv925,nssv2842 M 9 4 0 "" NA15510,NA18555,NA19129,NA19240 nsv216 X 146050651 146072429 CNV Insertion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv216 S 1 1 0 "" NA15510 nsv522113 X 146063551 146137734 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694886 S 2026 1 0 "" nsv9988 X 146063725 146075928 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27713,nssv27076,nssv23489,nssv28274 M 31 3 1 Samples from several populations that are part of the HapMap project. "" NA12872,NA18504,NA18860,NA19144 nsv519945 X 146090115 146136604 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697140 S 2026 1 0 "" nsv9989 X 146117087 146118651 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25492 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA07029 nsv7139 X 146278310 146313020 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8800 S 9 0 1 "" NA12156 nsv523755 X 146375658 146393752 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699573 S 2026 1 0 "" nsv7140 X 146542747 146578006 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv926 S 9 0 1 "" NA19240 nsv519034 X 146545149 146546018 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694300 S 2026 0 1 "" nsv442817 X 146549244 146553758 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv438158 X 146552055 146553473 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470226,nssv470227 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA18522,NA19153 nsv7141 X 146704322 146749203 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8802 S 9 0 1 "" NA12156 dgv2489e1 X 146718150 146857358 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1558,esv1416 M 271 0 0 "" NA18997 nsv510864 X 147069649 147139509 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620042 S 4 0 1 "" NA15510 nsv7463 X 147136340 147176141 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6384 S 9 0 0 "" NA12156 nsv522404 X 147260455 147284015 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695186 S 2026 1 0 "" nsv523386 X 147260455 147304237 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699135 S 2026 1 0 "" nsv527473 X 147336140 147406530 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703916 S 2026 1 0 "" nsv7142 X 147425423 147455848 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1877 S 9 1 0 "" NA18555 nsv515740 X 147532543 147561806 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv664642,nssv684927 M 2026 2 0 "" nsv525908 X 147620149 149364149 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702112 S 2026 1 0 "" nsv7144 X 147733674 147778795 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv4622,nssv8803 M 9 0 2 "" NA12156,NA19129 nsv469819 X 147840587 148025296 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649840 M 265 1 0 Samples from several populations that are part of the HapMap project. "" nsv7145 X 147905980 147930138 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8804 S 9 0 1 "" NA12156 nsv7146 X 148005284 148035915 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1878 S 9 1 0 "" NA18555 nsv438160 X 148101401 148102197 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470229,nssv470228 M 269 0 2 Samples from several populations that are part of the HapMap project. "" NA18500,NA19098 nsv522756 X 148128683 148229450 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698395 S 2026 1 0 "" esv32782 X 148205443 148221398 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv99520 S 51 0 1 "" 22335 nsv7147 X 148264917 148266303 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8805 S 9 1 0 "" NA12156 esv33821 X 148274648 148276394 CNV Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv94853 S 51 0 1 "" 22231 nsv518742 X 148281911 148502073 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696192 S 2026 1 0 "" nsv527463 X 148305732 148310628 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703906 S 2026 0 1 "" nsv508809 X 148335523 148430419 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv619607 S 4 1 0 "" NA10860 nsv7464 X 148347732 148797083 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9783,nssv928,nssv927,nssv11229,nssv9255,nssv5266 M 9 0 0 "" NA15510,NA18507,NA18517,NA19129,NA19240 nsv442818 X 148350317 148360258 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv9992 X 148350921 148355305 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27086,nssv26702 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA19144,NA19173 nsv438161 X 148351032 148356066 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470233,nssv470234,nssv470232,nssv470235,nssv470231 M 269 0 5 Samples from several populations that are part of the HapMap project. "" NA18506,NA18522,NA19144,NA19161,NA19173 nsv9993 X 148355305 148356989 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27096,nssv26743 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA19144,NA19173 nsv516868 X 148356231 148359686 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv677142,nssv677551,nssv654597,nssv673367,nssv657403 M 2026 0 5 "" nsv9994 X 148356689 148359443 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27106,nssv26754 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA19144,NA19173 nsv525260 X 148413368 148502073 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701359 S 2026 1 0 "" nsv524121 X 148417807 148474911 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv699999 S 2026 1 0 "" dgv2490e1 X 148422218 148800374 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv16951,esv784,essv11563,essv16280,essv10319 M 271 0 0 "" NA18506,NA19144,NA19161,NA19173 nsv217 X 148437890 148503271 OTHER Inversion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv217 S 1 0 0 "" NA15510 nsv508000 X 148475567 148481567 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv617988,nssv620490 M 4 2 0 "" CHM,NA15510 nsv518867 X 148479449 148588990 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696323 S 2026 1 0 "" nsv510566 X 148496644 148502644 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618489 S 4 0 1 "" CHM nsv516869 X 148502073 148793509 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv678026,nssv677552,nssv681454,nssv702788,nssv698081,nssv654598,nssv656241,nssv657404 M 2026 8 0 "" nsv818041 X 148554395 148633518 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416620,nssv1416621 M 112 2 0 "" NA19172,NA19173 essv14876 X 148575691 148687904 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18522 nsv9995 X 148581850 148759885 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27116,nssv26765 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA19144,NA19173 nsv818042 X 148588210 148633518 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1416450 S 112 1 0 "" NA19140 nsv442819 X 148589932 148687272 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv2491e1 X 148590921 148658261 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv12897,essv9834,essv8068 M 271 0 0 "" NA18522,NA19144,NA19161 dgv2492e1 X 148590921 148800374 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv13246,essv16370,essv12114,essv16187,essv13364 M 271 0 0 "" NA18506,NA19131,NA19159,NA19172,NA19173 nsv9996 X 148771244 148780103 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27563 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA12155 nsv425357 X 148839603 148839603 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv443935 M 24 "" nsv7148 X 148901186 148920341 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9929 S 9 0 1 "" NA18507 nsv7466 X 149203949 149297837 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5267,nssv10744,nssv932,nssv3827,nssv3828,nssv931,nssv9256,nssv5268,nssv6387,nssv6385,nssv1879 M 9 0 0 "" NA12156,NA12878,NA18517,NA18555,NA18956,NA19129,NA19240 nsv523240 X 149242170 149245920 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698968 S 2026 1 0 "" nsv526939 X 149242170 149267930 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703307 S 2026 1 0 "" nsv520835 X 149293224 149294661 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697641 S 2026 1 0 "" nsv526896 X 149312587 149313982 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv703254 S 2026 0 1 "" nsv508810 X 149337398 149421239 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623611 S 4 1 0 "" NA18994 nsv527628 X 149369789 149397659 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704096 S 2026 1 0 "" nsv520338 X 149468922 149475832 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697357 S 2026 0 1 "" nsv7149 X 149481696 149516039 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv933 S 9 1 0 "" NA19240 nsv508811 X 149502792 149557441 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623612 S 4 1 0 "" NA18994 nsv525661 X 149570821 149631687 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv701817 S 2026 1 0 "" nsv508813 X 149574118 149650522 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623613 S 4 1 0 "" NA18994 nsv7150 X 149612044 149641338 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1880 S 9 1 0 "" NA18555 nsv510567 X 149614208 149620208 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618490,nssv621378,nssv622212 M 4 0 3 "" CHM,NA10860,NA15510 nsv7151 X 149632652 149669668 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8806 S 9 0 1 "" NA12156 nsv510865 X 149917832 149987636 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618890 S 4 0 1 "" NA10860 nsv508001 X 149961049 149967049 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620491,nssv617989 M 4 2 0 "" CHM,NA15510 nsv7152 X 149996269 150040913 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8807 S 9 0 1 "" NA12156 nsv7153 X 150105429 150151231 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6388 S 9 0 1 "" NA12156 nsv517397 X 150117091 150146845 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv675658,nssv666537,nssv651900,nssv697321,nssv689477,nssv673196,nssv691091 M 2026 7 0 "" nsv517909 X 150297360 150460284 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695319 S 2026 1 0 "" nsv7155 X 150352523 150387234 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv934 S 9 1 0 "" NA19240 nsv7156 X 150512788 150545017 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv10745 S 9 1 0 "" NA18956 nsv424967 X 150547468 150549066 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv443545 M 24 "" nsv515485 X 150548112 150548886 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv678210,nssv669766,nssv668608,nssv672279,nssv653561,nssv654304,nssv681351,nssv651664,nssv667766,nssv693126,nssv687608,nssv677516,nssv665425,nssv672204,nssv686968,nssv665374,nssv674113,nssv687313 M 2026 0 18 "" nsv520926 X 150564936 150571957 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697692 S 2026 1 0 "" nsv518142 X 150578301 150590423 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695563 S 2026 1 0 "" nsv425333 X 150602541 150602541 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv443911 M 24 "" nsv510866 X 150697137 150769129 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620043 S 4 0 1 "" NA15510 nsv528228 X 150744616 150782246 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704790 S 2026 1 0 "" nsv510867 X 150775354 150826085 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv618891 S 4 0 1 "" NA10860 nsv517791 X 150829344 150943759 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv664057,nssv653273,nssv699929,nssv696337,nssv666842,nssv669293,nssv684382,nssv661620,nssv654980 M 2026 9 0 "" nsv520971 X 150948667 150975512 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv678995,nssv693482 M 2026 2 0 "" nsv516934 X 151002337 151350792 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv656957,nssv689600,nssv700707,nssv683872,nssv701165,nssv662872,nssv702040,nssv657732,nssv655052,nssv704500 M 2026 9 1 "" nsv508814 X 151116760 151144540 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623614 S 4 1 0 "" NA18994 nsv7157 X 151243115 151275206 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv6389 S 9 1 0 "" NA12156 dgv2493e1 X 151572622 151688320 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv8530,esv1238 M 271 0 0 "" NA18523 nsv7158 X 151680531 151707801 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv1881 S 9 1 0 "" NA18555 nsv517284 X 151722719 151804888 CNV Gain+Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv666686,nssv702600,nssv702101,nssv681042,nssv693822,nssv702025,nssv659888,nssv690116,nssv654201,nssv702281,nssv669107 M 2026 9 2 "" nsv520008 X 151753311 151805516 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv697175 S 2026 1 0 "" nsv510868 X 151817190 151881716 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622651 S 4 0 1 "" NA18994 nsv520777 X 151841933 151847985 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv675289,nssv686888 M 2026 2 0 "" nsv7467 X 151875750 152043534 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9784,nssv10746,nssv3831,nssv3830,nssv11230,nssv5272,nssv5271,nssv1882,nssv6390,nssv935,nssv10747,nssv5269 M 9 0 0 "" NA12156,NA12878,NA15510,NA18507,NA18555,NA18956,NA19129,NA19240 essv6402 X 151881624 151947652 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18572 dgv2494e1 X 151881624 152045136 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv6521,esv597 M 271 0 0 "" NA18572 nsv9997 X 151904371 151919096 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23831 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18572 esv33199 X 151904669 153383945 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv98750,essv98886,essv98841,essv97574,essv97471,essv100753,essv100866,essv100895,essv96861,essv95146,essv98316,essv94728,essv94129,essv101292,essv101280,essv94397,essv97015,essv97885,essv95679,essv95586,essv95620,essv95497,essv95263,essv97393,essv95923,essv99116,essv92945,essv92741,essv93603,essv93700,essv96138,essv96689,essv96649,essv96701,essv97274,essv100017,essv100088,essv99998,essv99937,essv99788,essv99916,essv99865,essv99870,essv93549,essv93189,essv99730,essv95049,essv94918,essv94960,essv95039,essv97986,essv97996,essv96475,essv96423,essv99355,essv99303,essv99275,essv99162,essv97615,essv97702,essv100126,essv100366,essv99471,essv99470,essv98487,essv98449,essv96302 M 51 3 38 "" 21606,21616,21656,21659,21721,21772,21791,21802,21805,21808,21817,21837,21841,21847,21872,21879,21911,21938,21939,21944,21972,22007,22011,22075,22086,22128,22170,22217,22231,22259,22261,22275,22278,22286,22300,22335,22352,22371 nsv9998 X 151918417 152046220 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv23858 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18572 dgv270e55 X 151920735 152033117 CNV Gain Pinto_et_al_2007 17911159 SNP_array esv2752316,esv34516 M 771 2 0 "" BEC_470,NA18572 nsv218 X 151934123 152001387 OTHER Inversion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv218 S 1 0 0 "" NA15510 nsv425348 X 151938345 151938428 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv443926 M 24 "" nsv510568 X 151940185 151946185 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624111 S 4 0 1 "" NA18994 nsv508815 X 151998976 151998976 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623616 S 4 1 0 "" NA18994 nsv526046 X 152248208 152276116 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv702282 S 2026 1 0 "" nsv522600 X 152267333 152290349 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705991 S 2026 1 0 "" nsv528291 X 152267333 153391341 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv704865 S 2026 1 0 "" nsv523072 X 152566049 153147585 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv698761 S 2026 1 0 "" nsv469867 X 152599583 152805224 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649888 M 265 0 0 Samples from several populations that are part of the HapMap project. "" nsv7159 X 152604100 152649380 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv8809 S 9 0 1 "" NA12156 esv33784 X 152748963 154492953 CNV Gain+Loss de_Smith_et_al_2007 17666407 Oligo_aCGH Agilent-015366 Custom Human 244K CGH Microarray essv101495,essv98905,essv97586,essv97560,essv101261,essv93823,essv100638,essv100749,essv100763,essv100771,essv100818,essv100869,essv100870,essv100909,essv96765,essv96766,essv96807,essv101083,essv95218,essv98269,essv98239,essv93991,essv101350,essv94305,essv96988,essv97847,essv97830,essv95671,essv95520,essv93062,essv97416,essv101736,essv95848,essv95840,essv95796,essv94556,essv99132,essv92934,essv92994,essv93751,essv96232,essv97087,essv98611,essv99907,essv100070,essv99940,essv99762,essv99778,essv99798,essv99811,essv99823,essv99835,essv99837,essv99898,essv96055,essv93448,essv93251,essv93242,essv99712,essv94845,essv94847,essv94872,essv94894,essv94959,essv92519,essv98072,essv96489,essv99147,essv99306,essv99195,essv99194,essv100117,essv100618,essv100289,essv99421,essv98413 M 51 2 43 "" 21603,21606,21616,21618,21634,21656,21659,21693,21721,21772,21802,21805,21808,21817,21837,21841,21847,21863,21879,21909,21911,21932,21938,21939,21972,22007,22075,22085,22086,22127,22128,22170,22217,22231,22233,22259,22261,22275,22286,22298,22300,22335,22352 nsv519506 X 152760567 152768801 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696889 S 2026 1 0 "" nsv517994 X 152869278 152901870 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695407 S 2026 1 0 "" nsv519042 X 152869278 153393397 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696511 S 2026 1 0 "" nsv7160 X 152889743 152922546 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3832 S 9 1 0 "" NA12878 nsv7161 X 152912113 153079398 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5273,nssv3833,nssv937,nssv936,nssv9257 M 9 0 4 "" NA12878,NA18517,NA19129,NA19240 nsv7468 X 153059238 153173262 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9786,nssv5275,nssv9259,nssv9785,nssv11231,nssv9258,nssv939,nssv11232,nssv938,nssv5274 M 9 0 0 "" NA15510,NA18507,NA18517,NA19129,NA19240 nsv219 X 153081928 153109733 OTHER Inversion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv219 S 1 0 0 "" NA15510 nsv9999 X 153088274 153142260 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27571 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA12155 nsv508002 X 153116240 153122240 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623098 S 4 1 0 "" NA18994 nsv220 X 153126494 153149694 OTHER Inversion Tuzun et al 2005 15895083 BAC_aCGH,PCR,Read-depth_analysis Capillary nssv220 S 1 0 0 "" NA15510 nsv508816 X 153284213 153383750 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623617 S 4 1 0 "" NA18994 nsv7469 X 153364003 153386327 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv5276 S 9 0 0 "" NA19129 nsv511088 X 153383750 153401612 CNV Complex Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624333 S 4 0 0 "" NA18994 nsv518228 X 153393397 153511685 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695657 S 2026 1 0 "" nsv521523 X 153468101 153511685 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv694457 S 2026 1 0 "" nsv516158 X 153582787 153623381 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv689388,nssv671736,nssv684383,nssv681519,nssv662790,nssv674697,nssv693656,nssv671099,nssv666538,nssv680729,nssv677047,nssv694576,nssv673197 M 2026 13 0 "" nsv518251 X 153889155 154003865 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv695682 S 2026 1 0 "" nsv528909 X 153930122 154009463 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv705594 S 2026 1 0 "" nsv517430 X 153966510 153981072 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv652002,nssv685996,nssv672670,nssv658665,nssv686908,nssv677566 M 2026 0 6 "" nsv508817 X 154127686 154197147 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623618 S 4 1 0 "" NA18994 nsv7470 X 154128412 154327912 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3834,nssv9930,nssv10749,nssv1884 M 9 0 0 "" NA12878,NA18507,NA18555,NA18956 nsv818043 X 154301080 154341268 CNV Gain Wang_et_al_2007 17921354 SNP_array Illumina HumanHap550 Bead Chip nssv1417803 S 112 1 0 "" NA12234 nsv519485 X 154301080 154493116 CNV Loss Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv696877 S 2026 0 1 "" nsv438162 X 154338367 154341268 CNV Loss McCarroll et al 2006 16468122 SNP_genotyping_analysis Not Provided nssv470236 S 269 0 1 Samples from several populations that are part of the HapMap project. "" NA12003 nsv520699 X 154338367 154493116 CNV Gain Shaikh et al 2009 19592680 SNP_array Illumina HumanHap550 Genotyping BeadChip v3 nssv700054,nssv680829,nssv678628,nssv688059,nssv674290 M 2026 5 0 "" nsv7162 X 154339207 154385076 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv3835,nssv10750,nssv1885,nssv6391,nssv5277 M 9 0 5 "" NA12156,NA12878,NA18555,NA18956,NA19129 nsv510869 X 154345846 154393681 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622652 S 4 0 1 "" NA18994 nsv7163 X 154369522 154404106 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv941 S 9 1 0 "" NA19240 nsv471607 X 154445822 154605698 CNV Gain+Loss Sharp et al 2005 15918152 BAC_aCGH,FISH Eichler Segmental Duplication BAC array nssv549605,nssv549606,nssv549607,nssv549609,nssv549608 M 48 4 1 "" NA10496,NA10971,NA15731,NA15733,NA17059 nsv510870 X 154479739 154503773 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv620045,nssv617452,nssv618892 M 4 0 3 "" CHM,NA10860,NA15510 nsv508818 X 154591042 154626603 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623619 S 4 1 0 "" NA18994 nsv10000 X 154652741 154656895 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28276,nssv26776,nssv27126 M 31 0 3 Samples from several populations that are part of the HapMap project. "" NA18860,NA19144,NA19173 nsv10001 X 154721235 154723013 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26787,nssv26442,nssv28278,nssv27750 M 31 4 0 Samples from several populations that are part of the HapMap project. "" NA18504,NA18860,NA19007,NA19173 nsv10003 X 154809810 154824264 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26456,nssv28280 M 31 2 0 Samples from several populations that are part of the HapMap project. "" NA18860,NA19007 nsv10004 Y 564762 573182 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27757 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18504 nsv10005 Y 655166 658686 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28312,nssv23517,nssv25515 M 31 0 3 Samples from several populations that are part of the HapMap project. "" NA07029,NA12872,NA18860 nsv508819 Y 950831 1000425 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping "" S 4 1 0 "" NA15510 nsv510871 Y 1696629 1866510 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping "" S 4 0 1 "" NA15510 nsv10006 Y 1862943 1866276 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26470,nssv27136,nssv26798,nssv27764 M 31 0 4 Samples from several populations that are part of the HapMap project. "" NA18504,NA19007,NA19144,NA19173 nsv10007 Y 1954338 1959400 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26495,nssv26157 M 31 0 2 Samples from several populations that are part of the HapMap project. "" NA18563,NA18853 nsv10008 Y 1979134 1985072 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27771,nssv28314,nssv26484,nssv23885,nssv25538 M 31 5 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA18504,NA18572,NA18860,NA19007 nsv10009 Y 2285671 2289045 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26206,nssv23545,nssv26809,nssv27176,nssv28316,nssv26498,nssv25561,nssv27778 M 31 8 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA12872,NA18504,NA18853,NA18860,NA19007,NA19144,NA19173 nsv10010 Y 2410165 2415654 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27579 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA12155 nsv508003 Y 2534290 2540290 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623099 S 4 1 0 "" NA18994 nsv508004 Y 3033903 3039903 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping "" S 4 1 0 "" NA15510 nsv510569 Y 3119170 3125170 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping "" S 4 0 1 "" NA15510 nsv10011 Y 3540580 4581358 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv25993,nssv26225,nssv27785 M 31 3 0 Samples from several populations that are part of the HapMap project. "" NA07048,NA18504,NA18853 nsv510570 Y 5338073 5344073 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping "" S 4 0 1 "" NA15510 nsv508005 Y 5783198 5789198 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping "" S 4 1 0 "" NA15510 nsv508006 Y 5871202 5877202 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping "" S 4 1 0 "" NA15510 dgv2495e1 Y 5999160 6170200 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv17011,essv6598,essv11152 M 271 0 0 "" NA18621,NA19144,NA19211 dgv2496e1 Y 5999160 6369813 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv7,essv12267,essv20001,essv15293,essv4239 M 271 0 0 "" NA07048,NA18603,NA18862,NA19101 nsv510872 Y 6018819 6081703 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622653 S 4 0 1 "" NA18994 dgv15n29 Y 6075974 6245433 CNV Loss Locke et al 2006 16826518 BAC_aCGH nsv469876,nsv469743 M 265 0 7 "" nsv7473 Y 6131889 10367842 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9931,nssv9788 M 9 0 0 "" NA18507 nsv510873 Y 6152089 6172699 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping "" S 4 0 1 "" NA15510 nsv10012 Y 6154416 6180757 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27792,nssv26013,nssv27799 M 31 1 1 Samples from several populations that are part of the HapMap project. "" NA07048,NA18504 nsv10014 Y 6184493 6192330 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27806 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18504 nsv508820 Y 6272487 6395672 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623621 S 4 1 0 "" NA18994 nsv7168 Y 6579880 6620575 CNV Loss Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9789 S 9 0 1 "" NA18507 nsv442820 Y 6587850 6612698 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv2497e1 Y 7738992 7981359 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv307,essv6683 M 271 0 0 "" NA18608 essv6780 Y 9174325 9284683 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18562 dgv2498e1 Y 9174325 10072259 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv8466,essv9145,essv10453,essv7413,essv11820,essv14875,essv6601,essv359,essv11177,essv15878,essv12536,essv16935,essv8275,essv22052,essv23473,essv16478,essv13770,essv10299,essv12216,essv10093,essv20079,essv4225,essv8940,essv16884,essv16494,esv310,essv12524,essv4992,essv9343,essv13832,essv12801,essv11567,essv13009,essv16678,essv15295,essv16300,essv17158,essv12707,essv9619,essv6677,essv11662,essv15387,essv12628,essv16019 M 271 0 0 "" NA07034,NA07048,NA12154,NA18500,NA18501,NA18506,NA18515,NA18516,NA18521,NA18522,NA18603,NA18608,NA18621,NA18623,NA18637,NA18853,NA18854,NA18859,NA18860,NA18862,NA18914,NA18971,NA19098,NA19101,NA19103,NA19120,NA19130,NA19139,NA19141,NA19142,NA19144,NA19153,NA19154,NA19161,NA19171,NA19173,NA19200,NA19203,NA19205,NA19207,NA19210,NA19211,NA19223 nsv10015 Y 9187624 9995409 CNV Gain+Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26033,nssv27206,nssv26072,nssv27196,nssv23912,nssv26509,nssv27813,nssv26053,nssv27186,nssv28320,nssv28318,nssv27587,nssv23939,nssv25584 M 31 8 2 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA12155,NA18504,NA18563,NA18572,NA18860,NA19144 nsv469840 Y 9231732 10104333 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649861 M 265 0 2 Samples from several populations that are part of the HapMap project. "" nsv471608 Y 9231733 10104333 CNV Gain+Loss Sharp et al 2005 15918152 BAC_aCGH,FISH Eichler Segmental Duplication BAC array nssv550877,nssv550857,nssv550858,nssv550855,nssv550878,nssv550850,nssv550851,nssv550880,nssv550861,nssv550866,nssv550881,nssv550879 M 48 11 21 "" JK1058,JK1061,JK1688,JK776,NA10469,NA10470,NA10471,NA10472,NA10473,NA10492,NA10493,NA10494,NA10495,NA10496,NA10967,NA10969,NA10979,NA11323,NA11521,NA11523,NA15728,NA15729,NA15730,NA15731,NA15732,NA15733,NA16688,NA17051,NA17052,NA17058,NA17059,P86GA nsv7169 Y 9963940 9964734 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9790 S 9 1 0 "" NA18507 nsv510571 Y 10013550 10019550 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624112 S 4 0 1 "" NA18994 nsv10016 Y 10324750 10340789 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27216,nssv26820,nssv23966,nssv26244,nssv27850 M 31 5 0 Samples from several populations that are part of the HapMap project. "" NA18504,NA18572,NA18853,NA19144,NA19173 essv17571 Y 10432535 10606345 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA12762 dgv2499e1 Y 10432535 10697914 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv871,essv20217,essv11181,essv21733,essv24931,essv12177,essv11630,esv2,essv4728,essv17010,essv8440,essv9666,essv17941,essv15838,essv12830 M 271 0 0 "" NA06994,NA12003,NA12144,NA12248,NA18516,NA18620,NA18913,NA19000,NA19101,NA19120,NA19144,NA19154,NA19211,NA19223 nsv10017 Y 10459317 10460675 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27595 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA12155 essv391 Y 10537298 10697914 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18971 nsv10018 Y 10608962 10624632 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27857 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18504 nsv10019 Y 10627041 10630051 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27864 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18504 nsv510874 Y 12616446 12685101 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv622654 S 4 0 1 "" NA18994 nsv471609 Y 12757297 12924529 CNV Gain+Loss Sharp et al 2005 15918152 BAC_aCGH,FISH Eichler Segmental Duplication BAC array nssv550095,nssv550098,nssv550089,nssv550096,nssv550088,nssv550097,nssv550087 M 48 7 19 "" NA10471,NA10472,NA10473,NA10493,NA10496,NA10967,NA10979,NA11323,NA11521,NA11523,NA15724,NA15726,NA15728,NA15729,NA15730,NA15731,NA15733,NA16688,NA17014,NA17015,NA17017,NA17020,NA17051,NA17052,NA17058,NA17059 nsv7170 Y 12917712 12935912 CNV Insertion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9932 S 9 1 0 "" NA18507 nsv469834 Y 14424073 14565958 CNV Gain Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649855 M 265 1 0 Samples from several populations that are part of the HapMap project. "" nsv510572 Y 15336869 15342869 CNV Loss Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv624113 S 4 0 1 "" NA18994 nsv469874 Y 18397103 18597078 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649895 M 265 2 3 Samples from several populations that are part of the HapMap project. "" nsv10020 Y 18436460 18437182 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27871 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18504 nsv10021 Y 18568840 18569562 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27878 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18504 nsv469717 Y 18627244 18790708 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649738 M 265 0 0 Samples from several populations that are part of the HapMap project. "" dgv2500e1 Y 19062951 19393189 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array esv494,essv23910 M 271 0 0 "" NA12814 nsv10022 Y 19082709 19096953 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27885 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18504 nsv10023 Y 19171913 19248506 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27891 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18504 nsv508821 Y 19409712 19434342 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623622 S 4 1 0 "" NA18994 nsv10025 Y 19415188 21359261 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27897 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18504 nsv7474 Y 21494138 21585128 OTHER Inversion Kidd et al 2008 18451855 BAC_aCGH,FISH,MCD_analysis,OEA_assembly,Read-depth_analysis Capillary nssv9791,nssv9792 M 9 0 0 "" NA18507 nsv471610 Y 21745448 21919118 CNV Gain+Loss Sharp et al 2005 15918152 BAC_aCGH,FISH Eichler Segmental Duplication BAC array nssv549659,nssv549650,nssv549658,nssv549657,nssv549664 M 48 4 20 "" JK1688,NA10471,NA10472,NA10473,NA10493,NA10967,NA10979,NA11323,NA11521,NA11523,NA15726,NA15729,NA15730,NA15731,NA15732,NA15733,NA16688,NA17014,NA17016,NA17020,NA17051,NA17052,NA17058,NA17059 dgv2501e1 Y 21771803 22937953 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv20293,essv19626,essv24243,essv21662,essv11679,essv24922,essv8634,essv22100,essv15840,essv19758,essv12226,essv22062,essv22957,essv18436,essv22853,essv17966,essv9141,essv19649,essv24758,essv20375,essv24738,essv23493,essv23148,essv23994,essv340,essv23010,essv12961,esv436,essv20922,essv11505,essv20037,essv21805,essv23540,essv23932,essv15336,essv17311,essv19503,essv18286,essv17720,essv17469,essv9661,essv17105,essv18755,essv18992,essv16205,essv7042,essv17456,essv24371,essv22675,essv10335 M 271 0 0 "" NA06993,NA06994,NA07034,NA07048,NA07357,NA10830,NA10835,NA10846,NA10856,NA10857,NA10860,NA11829,NA11831,NA11839,NA12003,NA12005,NA12043,NA12144,NA12154,NA12155,NA12248,NA12264,NA12707,NA12716,NA12752,NA12760,NA12762,NA12801,NA12812,NA12814,NA12864,NA12872,NA12874,NA12891,NA18506,NA18612,NA18856,NA18859,NA18860,NA18862,NA18913,NA18971,NA19101,NA19154,NA19161,NA19171,NA19173,NA19223,NA19239 dgv2502e1 Y 21951675 22097515 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv10469,essv13749,essv19270,essv23228,essv12816,essv6224,essv16435,essv18335,essv6564 M 271 0 0 "" NA07029,NA10838,NA11994,NA18515,NA18621,NA18636,NA19120,NA19139,NA19153 dgv2503e1 Y 21951675 22332553 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv17003,essv12750 M 271 0 0 "" NA18914,NA19144 essv23856 Y 21951675 22516568 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA07022 nsv469635 Y 21986596 22128634 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649561 M 265 0 1 Samples from several populations that are part of the HapMap project. "" nsv471611 Y 21986597 22128634 CNV Gain+Loss Sharp et al 2005 15918152 BAC_aCGH,FISH Eichler Segmental Duplication BAC array nssv549674,nssv549687,nssv549686,nssv549671,nssv549688,nssv549672,nssv549685,nssv549673 M 48 4 24 "" NA10471,NA10472,NA10473,NA10493,NA10496,NA10967,NA10969,NA10970,NA10971,NA10976,NA10979,NA11323,NA11521,NA11523,NA15729,NA15730,NA15731,NA15732,NA15733,NA16688,NA16689,NA17016,NA17017,NA17020,NA17051,NA17052,NA17058,NA17059 nsv10026 Y 21991085 22410559 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28324,nssv25607,nssv23573,nssv26537,nssv27641,nssv25630,nssv27903,nssv26110,nssv26091,nssv26523,nssv28322,nssv27603,nssv23601 M 31 7 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA12155,NA12872,NA18504,NA18563,NA18860 nsv469695 Y 22330862 22499695 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649627 M 265 0 0 Samples from several populations that are part of the HapMap project. "" nsv10027 Y 22420484 22421592 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27909 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18504 nsv10028 Y 22423779 22424994 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26129 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA07048 essv11423 Y 22617025 22801348 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18857 essv15983 Y 22617025 22937953 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18501 nsv10029 Y 22649721 22671859 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27945,nssv26148,nssv26581,nssv27649,nssv25653,nssv28326,nssv23629 M 31 7 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA12155,NA12872,NA18504,NA18563,NA18860 nsv471612 Y 22698991 22857808 CNV Loss Sharp et al 2005 15918152 BAC_aCGH,FISH Eichler Segmental Duplication BAC array nssv549755 M 48 0 21 "" NA10471,NA10472,NA10473,NA10493,NA10496,NA10967,NA10979,NA11323,NA11521,NA11523,NA15729,NA15730,NA15731,NA15732,NA15733,NA16688,NA16689,NA17051,NA17052,NA17058,NA17059 nsv442821 Y 22699995 22803499 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv10030 Y 22797160 22798741 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28328,nssv27951,nssv26197,nssv23657,nssv25675,nssv27657 M 31 6 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA12155,NA12872,NA18504,NA18860 nsv442822 Y 22848643 22855117 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv10031 Y 22883100 22905243 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26216,nssv27665,nssv23715,nssv26595,nssv25727,nssv28330,nssv27957 M 31 7 0 Samples from several populations that are part of the HapMap project. "" NA07029,NA07048,NA12155,NA12872,NA18504,NA18563,NA18860 nsv508822 Y 22902591 22977750 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623623 S 4 1 0 "" NA18994 dgv2504e1 Y 23113433 23620119 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv3193,essv7822,essv6712,essv2189 M 271 0 0 "" NA18558,NA18608,NA18960,NA18974 dgv2505e1 Y 23113433 24069433 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv4590,essv3184,essv9615,essv9469,essv16709 M 271 0 0 "" NA18524,NA19012,NA19141,NA19142,NA19208 dgv2506e1 Y 23113433 24253006 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv12452,essv3761,essv5387,essv2698,essv4049,essv13480,essv1275,essv16753,essv2354,essv215,essv431,essv17233,essv11754,essv3962 M 271 0 0 "" NA18503,NA18504,NA18563,NA18635,NA18872,NA18940,NA18948,NA18952,NA18961,NA18967,NA18970,NA18995,NA19192,NA19207 nsv10032 Y 23129943 23131158 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26235 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA07048 nsv10033 Y 23133344 23134452 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27963 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18504 nsv10034 Y 23212454 24010323 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27673,nssv28364,nssv28366,nssv26297,nssv26831,nssv24050,nssv26262,nssv26512,nssv25771,nssv25749,nssv26635,nssv26526,nssv26280,nssv24023,nssv26622,nssv28362,nssv27236,nssv27969,nssv26314,nssv26842,nssv27681,nssv27226,nssv26609 M 31 0 10 Samples from several populations that are part of the HapMap project. "" NA07029,NA12155,NA18504,NA18563,NA18572,NA18853,NA18860,NA19007,NA19144,NA19173 essv10843 Y 23215094 24713457 CNV CNV Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array Agilent "" S 271 0 0 Samples from several populations that are part of the HapMap project. "" NA18871 nsv508824 Y 23419811 23466939 CNV Insertion Teague et al 2010 20534489 BAC_aCGH,OEA_assembly,Oligo_aCGH,Optical_mapping,Paired-end_mapping Optical Mapping nssv623624 S 4 1 0 "" NA18994 nsv442823 Y 23849013 24227031 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" nsv10036 Y 24033571 24034786 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26253 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA07048 nsv10037 Y 24045036 26458798 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27256,nssv26364,nssv26348,nssv26331,nssv26924,nssv26661,nssv24104,nssv26540,nssv27246,nssv25815,nssv26674,nssv27974,nssv25793,nssv27984,nssv26913,nssv27979,nssv24077,nssv28372,nssv28370,nssv28368,nssv27689,nssv27697,nssv26648,nssv26584 M 31 0 10 Samples from several populations that are part of the HapMap project. "" NA07029,NA12155,NA18504,NA18563,NA18572,NA18853,NA18860,NA19007,NA19144,NA19173 nsv469884 Y 24078095 24270497 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649905 M 265 3 3 Samples from several populations that are part of the HapMap project. "" nsv442824 Y 24305915 24568636 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv2507e1 Y 24543128 25817709 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv9635,essv16649 M 271 0 0 "" NA19141,NA19142 nsv442825 Y 24649214 25340861 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv2508e1 Y 24869967 25220935 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv7796,essv3224,essv2173 M 271 0 0 "" NA18558,NA18960,NA18974 dgv2509e1 Y 24869967 25817709 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv9451,essv4579,essv6648,essv3762 M 271 0 0 "" NA18524,NA18608,NA18961,NA19208 dgv2510e1 Y 24869967 26842096 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv1235,essv10822,essv3185,essv5336,essv13488,essv4056,essv2681,essv16806,essv2303,essv219,essv17241,essv11787,essv498,essv3971 M 271 0 0 "" NA18503,NA18504,NA18563,NA18635,NA18871,NA18872,NA18940,NA18948,NA18952,NA18967,NA18970,NA18995,NA19012,NA19192 nsv469740 Y 24968806 25156178 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649761 M 265 2 2 Samples from several populations that are part of the HapMap project. "" dgv2511e1 Y 25241502 25397143 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv12568,essv15802,essv11704,essv411,essv13875 M 271 0 0 "" NA18854,NA18971,NA19098,NA19154,NA19223 dgv2512e1 Y 25241502 25501828 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv17160,essv12239,essv16932,essv16018,essv11513,essv16308,essv11150,essv10298 M 271 0 0 "" NA18501,NA18506,NA19101,NA19144,NA19161,NA19171,NA19173,NA19211 nsv469766 Y 25258937 25405352 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649787 M 265 0 1 Samples from several populations that are part of the HapMap project. "" nsv471613 Y 25258938 25405352 CNV Gain+Loss Sharp et al 2005 15918152 BAC_aCGH,FISH Eichler Segmental Duplication BAC array nssv550499,nssv550500 M 48 2 20 "" NA10471,NA10472,NA10473,NA10493,NA10496,NA10967,NA10979,NA11323,NA11521,NA11523,NA15729,NA15730,NA15731,NA15732,NA15733,NA16688,NA16689,NA17014,NA17051,NA17052,NA17058,NA17059 nsv442826 Y 25379254 26513386 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv2513e1 Y 25470410 25653680 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv7821,essv3232 M 271 0 0 "" NA18558,NA18974 nsv469828 Y 25984286 26131849 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649849 M 265 1 3 Samples from several populations that are part of the HapMap project. "" nsv10038 Y 26476712 26484666 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26686 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18563 nsv469602 Y 26517149 26660945 CNV Gain Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649718 M 265 1 0 Samples from several populations that are part of the HapMap project. "" nsv10039 Y 26604373 26605587 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv26271 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA07048 nsv10040 Y 26607773 26608881 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27989 S 31 0 1 Samples from several populations that are part of the HapMap project. "" NA18504 nsv469854 Y 26609404 26776831 CNV Loss Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649875 M 265 0 1 Samples from several populations that are part of the HapMap project. "" nsv442827 Y 26615817 26776668 CNV CNV McCarroll et al 2008 18776908 SNP_array [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array "" S 270 "" dgv2514e1 Y 26835125 27123476 CNV Complex Redon et al 2006 17122850 BAC_aCGH,MassSpec,PCR,qPCR,SNP_array essv12223,esv151 M 271 0 0 "" NA19101 nsv469880 Y 26929890 27068336 CNV Complex Locke et al 2006 16826518 BAC_aCGH Eichler Segmental Duplication BAC array nssv649901 M 265 0 0 Samples from several populations that are part of the HapMap project. "" nsv426320 Y 57190244 57193802 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv444898 M 24 "" nsv426326 Y 57194538 57198096 CNV Loss Mills et al 2006 16902084 Sequence_alignment Not Provided nssv444904 M 24 "" nsv426317 Y 57341069 57341069 CNV Insertion Mills et al 2006 16902084 Sequence_alignment Not Provided nssv444895 M 24 "" nsv10042 Y 57530168 57534322 CNV Loss Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv27266,nssv28374,nssv26935 M 31 0 3 Samples from several populations that are part of the HapMap project. "" NA18860,NA19144,NA19173 nsv10043 Y 57598662 57600440 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28376,nssv28058,nssv26598,nssv26946 M 31 4 0 Samples from several populations that are part of the HapMap project. "" NA18504,NA18860,NA19007,NA19173 nsv10044 Y 57687237 57701691 CNV Gain Perry et al 2008 18304495 Oligo_aCGH Agilent-015685 + 015686 Custom Human 244K CGH Microarray nssv28378 S 31 1 0 Samples from several populations that are part of the HapMap project. "" NA18860